Query 039247
Match_columns 365
No_of_seqs 293 out of 1766
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.6 2.3E-16 7.9E-21 126.5 5.9 76 108-184 13-89 (91)
2 1x4j_A Ring finger protein 38; 99.6 2.7E-16 9.3E-21 121.1 3.7 69 115-184 4-72 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.5 1.9E-14 6.3E-19 103.9 4.8 52 132-183 3-54 (55)
4 2ep4_A Ring finger protein 24; 99.4 6.2E-14 2.1E-18 107.3 4.6 54 131-185 12-65 (74)
5 2ect_A Ring finger protein 126 99.4 1.1E-13 3.8E-18 106.9 5.6 55 131-186 12-66 (78)
6 2kiz_A E3 ubiquitin-protein li 99.4 1.1E-13 3.7E-18 104.5 5.3 54 131-185 11-64 (69)
7 2ecl_A Ring-box protein 2; RNF 99.4 1E-13 3.5E-18 108.8 3.9 52 133-184 14-76 (81)
8 2ecm_A Ring finger and CHY zin 99.3 6.8E-13 2.3E-17 95.5 4.6 51 132-183 3-54 (55)
9 1v87_A Deltex protein 2; ring- 99.3 1E-12 3.6E-17 108.4 6.2 52 133-185 24-95 (114)
10 3dpl_R Ring-box protein 1; ubi 99.3 1.5E-12 5.3E-17 107.8 5.4 49 133-182 36-99 (106)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.3E-12 4.3E-17 98.7 3.4 54 132-186 8-65 (71)
12 2ea6_A Ring finger protein 4; 99.3 1.7E-12 5.9E-17 97.1 4.1 52 131-183 12-67 (69)
13 2xeu_A Ring finger protein 4; 99.3 1.8E-12 6.2E-17 95.6 3.0 52 133-185 2-57 (64)
14 2ecn_A Ring finger protein 141 99.3 1.7E-12 5.9E-17 98.1 3.0 52 130-186 11-62 (70)
15 2ct2_A Tripartite motif protei 99.2 6.8E-12 2.3E-16 98.3 5.9 54 131-185 12-69 (88)
16 2d8t_A Dactylidin, ring finger 99.2 6.1E-12 2.1E-16 95.7 3.6 49 132-184 13-61 (71)
17 2djb_A Polycomb group ring fin 99.2 9.2E-12 3.1E-16 94.9 4.4 53 131-186 12-64 (72)
18 2d8s_A Cellular modulator of i 99.2 9.3E-12 3.2E-16 98.1 4.4 52 132-185 13-71 (80)
19 1chc_A Equine herpes virus-1 r 99.2 1E-11 3.5E-16 93.2 3.9 48 133-183 4-51 (68)
20 2yur_A Retinoblastoma-binding 99.2 1.8E-11 6E-16 94.0 4.8 53 131-186 12-66 (74)
21 4a0k_B E3 ubiquitin-protein li 99.2 3.6E-12 1.2E-16 107.5 0.3 50 133-183 47-111 (117)
22 2ysl_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 91.4 5.4 51 131-185 17-70 (73)
23 2csy_A Zinc finger protein 183 99.1 2.7E-11 9.2E-16 94.2 4.5 48 132-183 13-60 (81)
24 2ecy_A TNF receptor-associated 99.1 3.6E-11 1.2E-15 90.0 4.8 51 131-185 12-63 (66)
25 4ayc_A E3 ubiquitin-protein li 99.1 2.7E-11 9.2E-16 103.9 3.8 47 134-184 53-99 (138)
26 2ecv_A Tripartite motif-contai 99.1 1.1E-10 3.8E-15 90.3 6.5 52 131-186 16-73 (85)
27 2ecw_A Tripartite motif-contai 99.1 1E-10 3.5E-15 90.6 5.8 51 131-185 16-72 (85)
28 1t1h_A Gspef-atpub14, armadill 99.1 8.5E-11 2.9E-15 90.5 4.8 51 131-185 5-56 (78)
29 2ct0_A Non-SMC element 1 homol 99.1 1E-10 3.5E-15 91.0 5.1 49 133-184 14-64 (74)
30 2egp_A Tripartite motif-contai 99.1 4.4E-11 1.5E-15 91.9 2.8 51 131-185 9-66 (79)
31 3lrq_A E3 ubiquitin-protein li 99.0 8.7E-11 3E-15 95.4 3.4 48 133-184 21-70 (100)
32 2ysj_A Tripartite motif-contai 99.0 2E-10 6.9E-15 85.0 4.8 44 131-178 17-63 (63)
33 4ap4_A E3 ubiquitin ligase RNF 99.0 1.1E-10 3.8E-15 97.4 3.5 54 132-186 5-62 (133)
34 2y43_A E3 ubiquitin-protein li 99.0 2E-10 6.8E-15 92.6 4.2 48 133-184 21-69 (99)
35 2ecj_A Tripartite motif-contai 99.0 3E-10 1E-14 82.2 4.5 44 131-178 12-58 (58)
36 1g25_A CDK-activating kinase a 99.0 3.2E-10 1.1E-14 84.5 4.7 53 133-186 2-57 (65)
37 2ckl_A Polycomb group ring fin 99.0 2.1E-10 7.3E-15 93.9 3.7 50 132-184 13-62 (108)
38 3fl2_A E3 ubiquitin-protein li 99.0 4.9E-10 1.7E-14 94.0 5.1 48 133-184 51-99 (124)
39 4ap4_A E3 ubiquitin ligase RNF 99.0 2.5E-10 8.4E-15 95.3 3.2 53 132-185 70-126 (133)
40 3ztg_A E3 ubiquitin-protein li 98.9 4.1E-10 1.4E-14 89.3 4.1 50 131-183 10-61 (92)
41 1jm7_A BRCA1, breast cancer ty 98.9 7.6E-10 2.6E-14 90.5 5.4 48 134-185 21-71 (112)
42 2ckl_B Ubiquitin ligase protei 98.9 6.4E-10 2.2E-14 97.7 4.0 49 133-184 53-102 (165)
43 3hct_A TNF receptor-associated 98.9 8.1E-10 2.8E-14 92.0 3.1 50 131-184 15-65 (118)
44 1z6u_A NP95-like ring finger p 98.9 1.3E-09 4.5E-14 95.1 4.4 49 133-185 77-126 (150)
45 3l11_A E3 ubiquitin-protein li 98.8 7.2E-10 2.5E-14 91.6 1.4 48 133-184 14-62 (115)
46 2kr4_A Ubiquitin conjugation f 98.8 2.5E-09 8.5E-14 84.6 4.3 50 131-184 11-60 (85)
47 2kre_A Ubiquitin conjugation f 98.8 2.7E-09 9.3E-14 87.2 4.7 51 131-185 26-76 (100)
48 1rmd_A RAG1; V(D)J recombinati 98.8 1.8E-09 6.2E-14 89.4 3.4 48 134-185 23-71 (116)
49 1wgm_A Ubiquitin conjugation f 98.8 3.9E-09 1.3E-13 85.9 5.1 51 131-185 19-70 (98)
50 1e4u_A Transcriptional repress 98.8 1.2E-08 4.2E-13 79.7 6.3 56 131-187 8-65 (78)
51 2vje_A E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 79.6 2.6 47 133-183 7-56 (64)
52 2y1n_A E3 ubiquitin-protein li 98.7 4.4E-09 1.5E-13 104.9 4.2 48 134-185 332-380 (389)
53 1bor_A Transcription factor PM 98.7 5E-09 1.7E-13 76.3 3.2 47 132-185 4-50 (56)
54 1jm7_B BARD1, BRCA1-associated 98.7 4.3E-09 1.5E-13 87.5 2.6 46 133-184 21-67 (117)
55 3knv_A TNF receptor-associated 98.7 3.7E-09 1.3E-13 91.4 1.8 50 131-184 28-78 (141)
56 3k1l_B Fancl; UBC, ring, RWD, 98.6 8.2E-09 2.8E-13 101.2 2.5 53 132-184 306-373 (381)
57 2vje_B MDM4 protein; proto-onc 98.6 1.2E-08 4.1E-13 76.2 2.4 46 134-183 7-55 (63)
58 4ic3_A E3 ubiquitin-protein li 98.6 1.3E-08 4.6E-13 78.1 2.5 42 134-183 24-66 (74)
59 2c2l_A CHIP, carboxy terminus 98.6 2.3E-08 7.8E-13 93.2 4.1 50 131-184 205-255 (281)
60 2yu4_A E3 SUMO-protein ligase 98.5 3.8E-08 1.3E-12 79.0 3.8 47 132-181 5-59 (94)
61 3hcs_A TNF receptor-associated 98.5 3E-08 1E-12 87.3 3.3 51 130-184 14-65 (170)
62 1vyx_A ORF K3, K3RING; zinc-bi 98.5 1.1E-07 3.6E-12 70.8 3.9 48 132-183 4-58 (60)
63 2ecg_A Baculoviral IAP repeat- 98.4 1.1E-07 3.7E-12 73.0 3.2 42 135-184 26-68 (75)
64 2f42_A STIP1 homology and U-bo 98.4 1E-07 3.4E-12 85.9 3.2 50 131-184 103-153 (179)
65 1wim_A KIAA0161 protein; ring 98.4 1.4E-07 4.7E-12 75.3 2.9 48 133-181 4-61 (94)
66 2ea5_A Cell growth regulator w 98.4 2.5E-07 8.4E-12 70.2 4.1 45 132-184 13-58 (68)
67 2yho_A E3 ubiquitin-protein li 98.3 2.3E-07 7.8E-12 72.4 2.0 43 134-184 18-61 (79)
68 2bay_A PRE-mRNA splicing facto 98.2 5.4E-07 1.8E-11 67.1 2.1 49 135-186 4-52 (61)
69 3t6p_A Baculoviral IAP repeat- 98.1 5E-07 1.7E-11 88.9 1.9 44 132-183 293-337 (345)
70 3htk_C E3 SUMO-protein ligase 98.1 1.9E-06 6.4E-11 81.8 3.7 50 132-184 179-232 (267)
71 3nw0_A Non-structural maintena 97.8 2.2E-05 7.5E-10 73.4 5.2 50 133-185 179-230 (238)
72 3vk6_A E3 ubiquitin-protein li 97.7 1.7E-05 5.7E-10 64.7 3.6 45 136-183 3-48 (101)
73 2ko5_A Ring finger protein Z; 94.6 0.02 6.9E-07 46.1 3.0 51 131-186 25-75 (99)
74 2lri_C Autoimmune regulator; Z 92.6 0.073 2.5E-06 39.9 2.9 45 133-181 11-59 (66)
75 2jun_A Midline-1; B-BOX, TRIM, 90.3 0.14 4.9E-06 40.4 2.5 34 134-168 3-36 (101)
76 2l5u_A Chromodomain-helicase-D 87.9 0.33 1.1E-05 35.5 2.9 46 132-181 9-58 (61)
77 1we9_A PHD finger family prote 86.8 0.19 6.5E-06 36.8 1.0 49 132-180 4-57 (64)
78 1mm2_A MI2-beta; PHD, zinc fin 85.9 0.27 9.2E-06 36.0 1.4 47 132-182 7-57 (61)
79 3o36_A Transcription intermedi 85.7 0.24 8.4E-06 43.6 1.3 45 133-181 3-51 (184)
80 3u5n_A E3 ubiquitin-protein li 85.2 0.25 8.5E-06 44.5 1.1 47 132-182 5-55 (207)
81 1f62_A Transcription factor WS 84.7 0.46 1.6E-05 33.1 2.1 44 136-180 2-49 (51)
82 1wil_A KIAA1045 protein; ring 82.4 1.4 4.8E-05 34.7 4.2 35 132-168 13-47 (89)
83 3lqh_A Histone-lysine N-methyl 81.8 0.63 2.2E-05 41.5 2.3 47 135-181 3-63 (183)
84 2yql_A PHD finger protein 21A; 80.8 0.28 9.7E-06 35.1 -0.3 45 132-180 7-55 (56)
85 3v43_A Histone acetyltransfera 79.4 0.6 2.1E-05 38.0 1.2 45 136-180 63-111 (112)
86 2puy_A PHD finger protein 21A; 78.7 0.35 1.2E-05 35.0 -0.4 47 133-183 4-54 (60)
87 2k16_A Transcription initiatio 78.6 0.47 1.6E-05 35.7 0.3 50 133-183 17-70 (75)
88 1xwh_A Autoimmune regulator; P 76.6 0.46 1.6E-05 35.2 -0.2 46 132-181 6-55 (66)
89 1wep_A PHF8; structural genomi 76.2 1.6 5.6E-05 33.2 2.8 49 133-182 11-64 (79)
90 2ro1_A Transcription intermedi 76.2 0.87 3E-05 40.6 1.4 43 135-181 3-49 (189)
91 3m62_A Ubiquitin conjugation f 75.7 1.8 6.2E-05 47.6 3.9 49 132-184 889-938 (968)
92 1fp0_A KAP-1 corepressor; PHD 75.6 2.3 7.9E-05 33.6 3.6 46 132-181 23-72 (88)
93 1weu_A Inhibitor of growth fam 74.2 2.2 7.4E-05 33.9 3.1 45 132-181 34-85 (91)
94 2e6r_A Jumonji/ARID domain-con 74.1 0.43 1.5E-05 37.8 -1.1 48 133-181 15-66 (92)
95 2ysm_A Myeloid/lymphoid or mix 73.5 1.2 4.2E-05 35.9 1.6 47 132-179 5-55 (111)
96 2l43_A N-teminal domain from h 73.3 1.2 4.3E-05 34.9 1.5 52 132-183 23-77 (88)
97 2ku3_A Bromodomain-containing 71.3 1.5 5.2E-05 33.1 1.5 49 132-180 14-65 (71)
98 2e6s_A E3 ubiquitin-protein li 70.3 1.1 3.7E-05 34.4 0.5 44 136-180 28-76 (77)
99 2lv9_A Histone-lysine N-methyl 70.1 1.5 5E-05 35.0 1.2 44 135-180 29-75 (98)
100 2yt5_A Metal-response element- 68.6 2.8 9.6E-05 30.5 2.4 50 132-181 4-61 (66)
101 3shb_A E3 ubiquitin-protein li 68.3 1.1 3.6E-05 34.5 0.0 44 136-180 28-76 (77)
102 1wev_A Riken cDNA 1110020M19; 68.0 1.6 5.4E-05 34.2 1.0 50 134-183 16-74 (88)
103 2ri7_A Nucleosome-remodeling f 67.9 1.1 3.7E-05 38.9 0.0 49 132-181 6-59 (174)
104 3asl_A E3 ubiquitin-protein li 67.5 1.3 4.5E-05 33.2 0.4 44 136-180 20-68 (70)
105 2kgg_A Histone demethylase jar 66.3 2.5 8.4E-05 29.7 1.6 44 136-179 4-52 (52)
106 2lbm_A Transcriptional regulat 66.2 5.8 0.0002 33.9 4.2 46 131-180 60-116 (142)
107 2vpb_A Hpygo1, pygopus homolog 66.1 4.2 0.00014 30.0 2.9 33 134-166 8-41 (65)
108 3ql9_A Transcriptional regulat 65.6 4.1 0.00014 34.4 3.1 47 131-181 54-111 (129)
109 1wen_A Inhibitor of growth fam 65.0 4.6 0.00016 30.3 3.0 45 132-181 14-65 (71)
110 3ask_A E3 ubiquitin-protein li 64.1 1.9 6.4E-05 39.8 0.8 44 136-180 176-224 (226)
111 1wew_A DNA-binding family prot 62.6 2.2 7.6E-05 32.4 0.8 49 132-181 14-72 (78)
112 1wem_A Death associated transc 62.0 2.9 0.0001 31.4 1.4 46 134-181 16-70 (76)
113 1z60_A TFIIH basal transcripti 60.6 4.4 0.00015 29.6 2.1 43 135-178 16-58 (59)
114 3o70_A PHD finger protein 13; 59.6 2.4 8.3E-05 31.6 0.6 47 132-180 17-66 (68)
115 2xb1_A Pygopus homolog 2, B-ce 59.2 4.5 0.00016 32.6 2.2 48 135-182 4-62 (105)
116 2l2t_A Receptor tyrosine-prote 56.5 26 0.00088 24.1 5.3 11 65-75 28-38 (44)
117 1wee_A PHD finger family prote 56.2 1.8 6.1E-05 32.4 -0.7 48 133-181 15-66 (72)
118 3v43_A Histone acetyltransfera 53.6 18 0.00061 29.1 4.9 46 134-179 5-62 (112)
119 2ysm_A Myeloid/lymphoid or mix 52.4 2.6 8.9E-05 33.9 -0.3 45 136-181 56-104 (111)
120 4gne_A Histone-lysine N-methyl 52.3 9.2 0.00032 31.0 3.0 47 132-184 13-65 (107)
121 2cs3_A Protein C14ORF4, MY039 51.7 17 0.00059 28.4 4.2 39 133-171 14-52 (93)
122 3c6w_A P28ING5, inhibitor of g 49.8 4.1 0.00014 29.5 0.4 43 133-180 8-57 (59)
123 2rsd_A E3 SUMO-protein ligase 48.9 2.1 7E-05 31.8 -1.4 46 134-180 10-64 (68)
124 1wyh_A SLIM 2, skeletal muscle 48.8 16 0.00055 26.1 3.6 40 135-184 6-45 (72)
125 1x61_A Thyroid receptor intera 48.2 17 0.00057 26.1 3.6 40 134-183 5-44 (72)
126 1x4l_A Skeletal muscle LIM-pro 47.6 20 0.00068 25.7 4.0 41 134-184 5-47 (72)
127 2vnf_A ING 4, P29ING4, inhibit 47.6 4.4 0.00015 29.3 0.3 43 133-180 9-58 (60)
128 1wfk_A Zinc finger, FYVE domai 47.5 14 0.00047 28.7 3.2 37 132-168 7-43 (88)
129 3t7l_A Zinc finger FYVE domain 46.8 12 0.00041 29.1 2.8 37 133-169 19-55 (90)
130 1z2q_A LM5-1; membrane protein 46.8 15 0.00052 28.1 3.3 36 133-168 20-55 (84)
131 2kwj_A Zinc finger protein DPF 46.4 2.4 8.2E-05 34.5 -1.5 46 136-182 60-109 (114)
132 2l2t_A Receptor tyrosine-prote 46.4 37 0.0013 23.3 4.8 34 41-74 8-41 (44)
133 2kwj_A Zinc finger protein DPF 46.1 8.6 0.0003 31.1 1.9 34 135-168 2-41 (114)
134 2yw8_A RUN and FYVE domain-con 46.1 15 0.0005 28.0 3.1 36 132-167 17-52 (82)
135 1joc_A EEA1, early endosomal a 46.0 12 0.00041 31.0 2.8 35 133-167 68-102 (125)
136 1g47_A Pinch protein; LIM doma 45.7 17 0.00058 26.4 3.3 42 133-184 10-51 (77)
137 2knc_A Integrin alpha-IIB; tra 45.1 73 0.0025 22.7 6.4 26 43-68 10-35 (54)
138 2cu8_A Cysteine-rich protein 2 44.9 15 0.0005 26.8 2.9 40 134-184 9-48 (76)
139 2dj7_A Actin-binding LIM prote 44.9 15 0.00052 27.4 3.0 40 133-183 14-53 (80)
140 1x4u_A Zinc finger, FYVE domai 44.3 17 0.00058 27.7 3.2 34 132-165 12-45 (84)
141 1x4k_A Skeletal muscle LIM-pro 44.3 14 0.00047 26.5 2.6 40 135-184 6-45 (72)
142 1x63_A Skeletal muscle LIM-pro 43.6 18 0.00062 26.6 3.2 40 135-184 16-55 (82)
143 1dvp_A HRS, hepatocyte growth 43.5 12 0.00042 33.5 2.6 35 133-167 160-194 (220)
144 1y02_A CARP2, FYVE-ring finger 43.4 3.7 0.00013 34.1 -0.8 49 134-182 19-67 (120)
145 3mpx_A FYVE, rhogef and PH dom 43.2 5 0.00017 39.1 0.0 50 133-182 374-430 (434)
146 3zyq_A Hepatocyte growth facto 42.6 13 0.00044 33.7 2.6 36 133-168 163-198 (226)
147 2co8_A NEDD9 interacting prote 42.1 24 0.00081 26.3 3.7 43 133-186 14-56 (82)
148 1vfy_A Phosphatidylinositol-3- 42.0 18 0.00063 26.8 3.0 32 135-166 12-43 (73)
149 2l8s_A Integrin alpha-1; trans 41.4 51 0.0017 23.6 5.0 25 44-68 8-32 (54)
150 2ks1_B Epidermal growth factor 41.3 27 0.00094 23.9 3.5 8 68-75 32-39 (44)
151 1zbd_B Rabphilin-3A; G protein 40.9 15 0.00051 30.9 2.6 35 132-166 53-88 (134)
152 2l3k_A Rhombotin-2, linker, LI 40.4 17 0.00059 29.3 2.9 37 136-182 10-46 (123)
153 2g6q_A Inhibitor of growth pro 40.3 7.1 0.00024 28.4 0.4 44 132-180 9-59 (62)
154 1iml_A CRIP, cysteine rich int 38.7 12 0.00042 27.3 1.5 38 136-184 2-39 (76)
155 2ks1_B Epidermal growth factor 38.2 45 0.0015 22.8 4.2 13 60-72 28-40 (44)
156 2jmi_A Protein YNG1, ING1 homo 37.4 11 0.00038 29.7 1.1 44 132-180 24-75 (90)
157 1iij_A ERBB-2 receptor protein 36.9 16 0.00054 24.0 1.6 11 44-54 6-16 (35)
158 3i2d_A E3 SUMO-protein ligase 36.8 26 0.00088 34.5 3.9 47 135-185 250-301 (371)
159 3f6q_B LIM and senescent cell 36.6 21 0.0007 25.3 2.5 41 134-184 11-51 (72)
160 2d8y_A Eplin protein; LIM doma 36.0 37 0.0013 25.6 4.0 41 134-185 15-55 (91)
161 3j1r_A Archaeal adhesion filam 35.6 63 0.0021 19.7 4.0 13 42-54 1-13 (26)
162 2k1a_A Integrin alpha-IIB; sin 35.6 41 0.0014 22.8 3.6 26 43-68 8-33 (42)
163 2ct7_A Ring finger protein 31; 34.5 3.6 0.00012 31.8 -2.1 37 137-173 28-66 (86)
164 1x68_A FHL5 protein; four-and- 34.5 24 0.00082 25.7 2.6 39 135-183 6-46 (76)
165 4fo9_A E3 SUMO-protein ligase 34.2 31 0.001 33.8 4.0 49 135-186 216-268 (360)
166 1weo_A Cellulose synthase, cat 33.8 1.7E+02 0.006 23.0 7.6 50 134-183 16-69 (93)
167 2jmo_A Parkin; IBR, E3 ligase, 33.8 5.6 0.00019 30.3 -1.1 34 135-168 26-68 (80)
168 1x62_A C-terminal LIM domain p 33.7 33 0.0011 25.2 3.3 39 133-183 14-52 (79)
169 1afo_A Glycophorin A; integral 33.6 66 0.0023 21.5 4.3 26 44-69 11-36 (40)
170 1zfo_A LAsp-1; LIM domain, zin 32.1 26 0.0009 21.7 2.1 28 135-165 4-31 (31)
171 1x64_A Alpha-actinin-2 associa 31.9 46 0.0016 24.9 3.9 40 133-184 24-63 (89)
172 3kv5_D JMJC domain-containing 30.9 10 0.00034 38.6 -0.1 47 134-181 37-88 (488)
173 2ehe_A Four and A half LIM dom 30.4 32 0.0011 25.2 2.7 40 135-184 16-55 (82)
174 1a7i_A QCRP2 (LIM1); LIM domai 30.3 20 0.00067 26.5 1.5 40 134-184 7-46 (81)
175 3kqi_A GRC5, PHD finger protei 30.2 15 0.00052 27.4 0.8 46 135-181 11-61 (75)
176 2k21_A Potassium voltage-gated 29.2 1.1E+02 0.0037 25.8 5.9 36 39-74 47-82 (138)
177 2d8x_A Protein pinch; LIM doma 28.6 49 0.0017 23.4 3.4 40 134-185 5-44 (70)
178 2cor_A Pinch protein; LIM doma 28.6 47 0.0016 24.4 3.4 40 133-184 14-53 (79)
179 2gmg_A Hypothetical protein PF 28.3 15 0.0005 29.9 0.5 24 155-183 72-95 (105)
180 2l4z_A DNA endonuclease RBBP8, 28.2 29 0.001 28.2 2.3 39 134-183 61-99 (123)
181 3mjh_B Early endosome antigen 28.1 6.7 0.00023 25.6 -1.3 15 134-148 5-19 (34)
182 2d8z_A Four and A half LIM dom 28.1 53 0.0018 23.1 3.5 38 134-183 5-42 (70)
183 1x4i_A Inhibitor of growth pro 28.0 28 0.00096 25.8 2.0 47 133-182 5-56 (70)
184 3o7a_A PHD finger protein 13 v 27.2 12 0.00039 26.1 -0.3 43 136-180 6-51 (52)
185 2cup_A Skeletal muscle LIM-pro 27.0 61 0.0021 24.6 3.9 40 134-183 5-44 (101)
186 2egq_A FHL1 protein; LIM domai 26.9 40 0.0014 24.3 2.7 40 135-184 16-58 (77)
187 2zet_C Melanophilin; complex, 26.8 30 0.001 29.7 2.2 47 133-181 67-117 (153)
188 1nyp_A Pinch protein; LIM doma 26.7 40 0.0014 23.6 2.6 38 135-184 6-43 (66)
189 2jwa_A Receptor tyrosine-prote 26.1 73 0.0025 21.8 3.6 11 41-51 10-20 (44)
190 1wig_A KIAA1808 protein; LIM d 25.1 71 0.0024 23.0 3.8 37 135-183 6-42 (73)
191 2dar_A PDZ and LIM domain prot 24.4 50 0.0017 24.8 2.9 40 133-184 24-63 (90)
192 2knc_B Integrin beta-3; transm 24.0 84 0.0029 23.9 4.1 29 41-69 9-38 (79)
193 3a1b_A DNA (cytosine-5)-methyl 24.0 54 0.0019 28.4 3.3 45 132-180 77-133 (159)
194 2pk7_A Uncharacterized protein 23.5 20 0.00067 26.8 0.4 19 165-183 1-19 (69)
195 1x6a_A LIMK-2, LIM domain kina 23.3 44 0.0015 24.4 2.4 37 135-183 16-52 (81)
196 2jp3_A FXYD domain-containing 22.5 49 0.0017 24.7 2.3 21 48-68 19-39 (67)
197 1v6g_A Actin binding LIM prote 22.5 54 0.0018 23.9 2.7 38 135-184 16-53 (81)
198 2rgt_A Fusion of LIM/homeobox 22.5 33 0.0011 29.1 1.6 9 174-182 95-103 (169)
199 1rut_X Flinc4, fusion protein 22.4 39 0.0013 29.2 2.2 37 136-182 71-107 (188)
200 2iyb_E Testin, TESS, TES; LIM 22.3 48 0.0016 23.3 2.3 39 136-184 4-44 (65)
201 1yuz_A Nigerythrin; rubrythrin 22.1 18 0.0006 32.4 -0.2 25 150-181 171-195 (202)
202 3lbw_A M2 protein; proton chan 21.9 1.1E+02 0.0038 18.0 3.3 19 54-72 3-21 (23)
203 2jo1_A Phospholemman; FXYD1, N 21.9 67 0.0023 24.2 3.0 22 48-69 18-39 (72)
204 4bbq_A Lysine-specific demethy 21.1 13 0.00044 29.8 -1.2 44 137-180 62-113 (117)
205 2cur_A Skeletal muscle LIM-pro 20.8 66 0.0023 22.6 2.8 38 134-183 5-42 (69)
206 2pv0_B DNA (cytosine-5)-methyl 20.8 59 0.002 32.1 3.2 46 132-181 91-148 (386)
207 2jny_A Uncharacterized BCR; st 20.6 19 0.00066 26.8 -0.2 19 165-183 3-21 (67)
208 2lx0_A Membrane fusion protein 20.6 1.5E+02 0.0052 18.3 3.9 24 49-72 8-31 (32)
209 2ww9_C Protein transport prote 20.2 59 0.002 25.5 2.5 31 38-70 55-85 (87)
210 3bkd_A Transmembrane domain of 20.0 1.2E+02 0.0042 18.2 3.3 19 54-72 6-24 (26)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.63 E-value=2.3e-16 Score=126.50 Aligned_cols=76 Identities=33% Similarity=0.689 Sum_probs=66.9
Q ss_pred cCCCCCHHHHhhCCceeeeeccC-CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 108 HDSGLDQAFIDALPVFQYKEIVG-LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 108 ~~~gl~~~~i~~LP~~~y~~~~~-~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...+++++.|+.||.+.+..... ..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 13 ANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp CCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 35789999999999999876543 345678999999999999999999 99999999999999999999999998754
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-16 Score=121.08 Aligned_cols=69 Identities=38% Similarity=0.902 Sum_probs=61.0
Q ss_pred HHHhhCCceeeeeccCCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 115 AFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 115 ~~i~~LP~~~y~~~~~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
+.++.||.+.|+......+...|+||++.|...+.++.++ |+|.||..||..|+..+.+||+||+++..
T Consensus 4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3467899999987666667789999999999988899999 99999999999999999999999998854
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.49 E-value=1.9e-14 Score=103.91 Aligned_cols=52 Identities=50% Similarity=1.128 Sum_probs=47.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
.+..+|+||++.|..++.+..++.|+|.||..||..|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4556899999999998888888779999999999999999999999999874
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.2e-14 Score=107.26 Aligned_cols=54 Identities=41% Similarity=0.882 Sum_probs=48.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|...+.+.+++ |+|.||..||..|+..+.+||+||.++...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 455678999999999988888898 999999999999999999999999988643
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.43 E-value=1.1e-13 Score=106.86 Aligned_cols=55 Identities=35% Similarity=0.901 Sum_probs=49.0
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..+...|+||++.|...+.+++++ |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 345678999999999888888898 9999999999999999999999999986654
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=104.52 Aligned_cols=54 Identities=37% Similarity=0.923 Sum_probs=48.1
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999999888888998 999999999999999999999999988653
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=108.85 Aligned_cols=52 Identities=31% Similarity=0.781 Sum_probs=42.8
Q ss_pred CCCcCccccCcccC-----------CCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSE-----------KDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~-----------~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
+...|+||++.|.. ++.++.++.|+|.||..||..||..+.+||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 34578888888854 45566666699999999999999999999999998753
No 8
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.34 E-value=6.8e-13 Score=95.46 Aligned_cols=51 Identities=27% Similarity=0.680 Sum_probs=43.5
Q ss_pred CCCCcCccccCcccCCC-ceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKD-KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~-~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
.+...|+||++.|.+.+ .+.+++ |+|.||..||..|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 34568999999997644 466777 9999999999999999999999999764
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.34 E-value=1e-12 Score=108.44 Aligned_cols=52 Identities=29% Similarity=0.595 Sum_probs=41.5
Q ss_pred CCCcCccccCcccCCC---------------ceeecCCCCCccchhhHHHHH-----hcCCCCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKD---------------KLRLLPMCSHAFHINCIDTWL-----LSNSTCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~---------------~v~~lp~C~H~FH~~CI~~Wl-----~~~~sCPlCR~~l~~~ 185 (365)
.+.+|+||++.|.... .+++++ |+|+||..||..|+ ..+.+||+||..+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3468999999997643 234667 99999999999999 4567899999987543
No 10
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.30 E-value=1.5e-12 Score=107.81 Aligned_cols=49 Identities=31% Similarity=0.676 Sum_probs=42.0
Q ss_pred CCCcCccccCcccCCC---------------ceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKD---------------KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~---------------~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
++..|+||++.|...- .++.++ |+|.||..||+.||..+.+||+||+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREW 99 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcc
Confidence 5678999999998541 255666 999999999999999999999999985
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28 E-value=1.3e-12 Score=98.72 Aligned_cols=54 Identities=26% Similarity=0.618 Sum_probs=45.3
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 132 KEPFDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
.+...|+||++.|... +.+..++ |||.||..||..|+..+.+||+||.++....
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 4567899999998763 4446777 9999999999999999999999999886543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=97.13 Aligned_cols=52 Identities=27% Similarity=0.639 Sum_probs=44.0
Q ss_pred CCCCCcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 131 LKEPFDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..+...|+||++.|... ..+.+++ |+|.||..||..|+..+.+||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence 34567899999999863 3346677 9999999999999999999999999874
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.26 E-value=1.8e-12 Score=95.61 Aligned_cols=52 Identities=27% Similarity=0.637 Sum_probs=44.1
Q ss_pred CCCcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
+...|+||++.|... +.+..++ |||.||..||..|+..+.+||+||.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999763 3446777 999999999999999999999999988654
No 14
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=1.7e-12 Score=98.10 Aligned_cols=52 Identities=31% Similarity=0.837 Sum_probs=44.7
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 130 GLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
...+...|+||++.+.. ..++ |+|.||..||..|+..+.+||+||.++....
T Consensus 11 ~~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 34566789999999876 5677 9999999999999999999999999886543
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=6.8e-12 Score=98.33 Aligned_cols=54 Identities=30% Similarity=0.765 Sum_probs=45.9
Q ss_pred CCCCCcCccccCcccCCCc-eeecCCCCCccchhhHHHHHhcC---CCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDK-LRLLPMCSHAFHINCIDTWLLSN---STCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~-v~~lp~C~H~FH~~CI~~Wl~~~---~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|...+. ..+++ |||.||..||..|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 4556789999999998765 66777 99999999999999876 7899999987554
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=6.1e-12 Score=95.65 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=42.8
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.+...|+||++.|.. ...++ |+|.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 455789999999866 56678 99999999999999999999999998753
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.2e-12 Score=94.92 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=43.7
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..+...|+||++.|.+ .+.+++ |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4456789999999876 233346 9999999999999999999999999886543
No 18
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.3e-12 Score=98.12 Aligned_cols=52 Identities=29% Similarity=0.784 Sum_probs=43.8
Q ss_pred CCCCcCccccCcccCCCceeecCCCC-----CccchhhHHHHHhcC--CCCCcccccccCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCS-----HAFHINCIDTWLLSN--STCPLCRDTLFTP 185 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~-----H~FH~~CI~~Wl~~~--~sCPlCR~~l~~~ 185 (365)
.+...|.||+++|.+++.+ ++| |+ |.||..||++||..+ .+||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 4456899999999887766 578 96 999999999999865 4899999988654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.18 E-value=1e-11 Score=93.17 Aligned_cols=48 Identities=40% Similarity=0.820 Sum_probs=42.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+...|+||++.+.+ .+..++ |||.||..||..|+..+.+||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 45689999999865 356778 9999999999999999999999999875
No 20
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.17 E-value=1.8e-11 Score=94.04 Aligned_cols=53 Identities=26% Similarity=0.694 Sum_probs=43.2
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCcccccccCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDTLFTPG 186 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~l~~~~ 186 (365)
..+...|+||++.|.+ ..+++.|||.||..||..|+..+ .+||+||.++...+
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 12 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp SCGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 3456789999999986 45566699999999999999865 68999999765443
No 21
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.16 E-value=3.6e-12 Score=107.54 Aligned_cols=50 Identities=30% Similarity=0.676 Sum_probs=1.0
Q ss_pred CCCcCccccCcccCC-------------C--ceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEK-------------D--KLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~-------------~--~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+...|+||++.|... + .+..++ |+|.||..||+.||..+.+||+||+++.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 456899999999752 2 222345 9999999999999999999999999863
No 22
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=91.44 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=42.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|.+ ..+++ |||.||..||..|+. .+..||+||..+...
T Consensus 17 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 4566789999999886 55677 999999999999997 456899999988543
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.7e-11 Score=94.23 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=42.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
.+...|+||++.|.. ..+++ |+|.||..||..|+....+||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999866 55677 9999999999999999999999999885
No 24
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=89.95 Aligned_cols=51 Identities=20% Similarity=0.629 Sum_probs=41.9
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.+.+ ...++ |||.||..||..|+. .+..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCS---PKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEESS---CCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CCcCCCCCCCChHhcC---eeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 3456789999999876 34467 999999999999995 567899999988653
No 25
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.7e-11 Score=103.85 Aligned_cols=47 Identities=32% Similarity=0.853 Sum_probs=41.9
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+||++.|.+ +.+++ |||.||..||..|+..+.+||+||.++..
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999999976 66788 99999999999999999999999998853
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=90.35 Aligned_cols=52 Identities=29% Similarity=0.650 Sum_probs=43.8
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc------CCCCCcccccccCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS------NSTCPLCRDTLFTPG 186 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~------~~sCPlCR~~l~~~~ 186 (365)
..+...|+||++.|.. ...++ |+|.||..||..|+.. ...||+||..+....
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred ccCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4556789999999876 45677 9999999999999987 778999999886543
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=1e-10 Score=90.57 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=43.2
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc------CCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS------NSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~------~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|.. ..+++ |+|.||..||..|+.. ...||+||..+...
T Consensus 16 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 16 IKEEVTCPICLELLKE---PVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CCTTTSCTTTCSCCSS---CEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred CccCCCCcCCChhhCc---ceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4556789999999876 44677 9999999999999987 66899999988654
No 28
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.08 E-value=8.5e-11 Score=90.51 Aligned_cols=51 Identities=24% Similarity=0.567 Sum_probs=43.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|.+ ..+++ |||.||..||..|+.. +.+||+||.++...
T Consensus 5 ~~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 5 FPEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp CSSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred CcccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 3556789999999876 55677 9999999999999987 77899999988643
No 29
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=91.04 Aligned_cols=49 Identities=22% Similarity=0.566 Sum_probs=41.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~l~~ 184 (365)
...+|+||++.|.+++... .|+|.||..||.+||+.+ .+||+||.++..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3468999999999765443 499999999999999987 789999998754
No 30
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06 E-value=4.4e-11 Score=91.95 Aligned_cols=51 Identities=27% Similarity=0.571 Sum_probs=43.0
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-------CCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-------NSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-------~~sCPlCR~~l~~~ 185 (365)
..+...|+||++.|.+ ...++ |||.||..||..|+.. ...||+||..+...
T Consensus 9 ~~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 9 VQEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4566789999999876 45577 9999999999999987 56899999988654
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.03 E-value=8.7e-11 Score=95.41 Aligned_cols=48 Identities=35% Similarity=0.847 Sum_probs=41.2
Q ss_pred CCCcCccccCcccCCCceee-cCCCCCccchhhHHHHHhcC-CCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRL-LPMCSHAFHINCIDTWLLSN-STCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~-lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l~~ 184 (365)
+...|+||++.|.. ... ++ |||.||..||..|+..+ .+||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 34689999999976 445 77 99999999999999987 699999998854
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2e-10 Score=84.96 Aligned_cols=44 Identities=32% Similarity=0.696 Sum_probs=37.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLC 178 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlC 178 (365)
..+...|+||++.|.+ ..+++ |||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4566789999999886 55677 999999999999998 45689998
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.01 E-value=1.1e-10 Score=97.39 Aligned_cols=54 Identities=26% Similarity=0.618 Sum_probs=45.3
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 132 KEPFDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
.+...|+||++.|.+. +.+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence 3457899999999763 3446777 9999999999999999999999999886543
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.00 E-value=2e-10 Score=92.58 Aligned_cols=48 Identities=27% Similarity=0.684 Sum_probs=41.2
Q ss_pred CCCcCccccCcccCCCceeec-CCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLL-PMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~l-p~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
+...|+||++.|.+ ...+ + |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 34689999999886 4444 6 99999999999999999999999998754
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3e-10 Score=82.18 Aligned_cols=44 Identities=34% Similarity=0.850 Sum_probs=36.6
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLC 178 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlC 178 (365)
..+...|+||++.|.+ ..+++ |+|.||..||..|+. .+.+||+|
T Consensus 12 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKE---PVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSS---CCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCc---cEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3456789999999877 45577 999999999999954 56789998
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=3.2e-10 Score=84.47 Aligned_cols=53 Identities=19% Similarity=0.527 Sum_probs=41.3
Q ss_pred CCCcCccccC-cccCCCce-eecCCCCCccchhhHHHHHhc-CCCCCcccccccCCC
Q 039247 133 EPFDCAVCLC-EFSEKDKL-RLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTPG 186 (365)
Q Consensus 133 ~~~~CaICl~-~f~~~~~v-~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~~ 186 (365)
+...|+||++ .|...... .+++ |||.||..||..|+.. ...||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 57 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN 57 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence 3468999999 77665443 3466 9999999999999765 457999999886543
No 37
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.98 E-value=2.1e-10 Score=93.92 Aligned_cols=50 Identities=24% Similarity=0.640 Sum_probs=42.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.+...|+||++.|.+ .+.+++ |||.||..||..|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 445789999999876 333347 99999999999999999999999998864
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.95 E-value=4.9e-10 Score=93.98 Aligned_cols=48 Identities=27% Similarity=0.548 Sum_probs=41.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~ 184 (365)
+...|+||++.|.. ...++ |||.||..||..|+..+. +||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 44689999999986 56677 999999999999998554 89999998865
No 39
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=2.5e-10 Score=95.30 Aligned_cols=53 Identities=26% Similarity=0.636 Sum_probs=44.3
Q ss_pred CCCCcCccccCcccCC----CceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 132 KEPFDCAVCLCEFSEK----DKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~----~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
.+...|+||++.|... ..+..++ |||.||..||+.|+..+.+||+||.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 4567899999998762 2335666 999999999999999999999999988654
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.94 E-value=4.1e-10 Score=89.29 Aligned_cols=50 Identities=26% Similarity=0.675 Sum_probs=41.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCccccccc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPLCRDTLF 183 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPlCR~~l~ 183 (365)
..+...|+||++.|.+ ...++.|||.||..||..|+..+ ..||+||.++.
T Consensus 10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 4566789999999886 45666699999999999999754 58999999873
No 41
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.93 E-value=7.6e-10 Score=90.48 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=40.3
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC---CCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS---TCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~---sCPlCR~~l~~~ 185 (365)
...|+||++.|.. ...++ |||.||..||..|+..+. +||+||.++...
T Consensus 21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence 3579999999876 44577 999999999999998654 899999988654
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.90 E-value=6.4e-10 Score=97.70 Aligned_cols=49 Identities=35% Similarity=0.722 Sum_probs=40.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~ 184 (365)
+...|+||++.|.+ .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 34589999999886 344446 9999999999999997 7789999998853
No 43
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.86 E-value=8.1e-10 Score=92.05 Aligned_cols=50 Identities=28% Similarity=0.703 Sum_probs=42.2
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFT 184 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~ 184 (365)
..+...|+||++.|.. ...++ |||.||..||..|+.... +||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcC---eEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 3456789999999876 45677 999999999999998765 89999998754
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.85 E-value=1.3e-09 Score=95.09 Aligned_cols=49 Identities=22% Similarity=0.503 Sum_probs=41.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~~ 185 (365)
+...|+||++.|.+ ..+++ |||.||..||..|+.... +||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45689999999876 55678 999999999999999765 899999988654
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.82 E-value=7.2e-10 Score=91.63 Aligned_cols=48 Identities=25% Similarity=0.673 Sum_probs=40.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~ 184 (365)
+...|+||++.|.. ...++ |||.||..||..|+.. +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 34679999999876 55677 9999999999999986 5689999998853
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.81 E-value=2.5e-09 Score=84.64 Aligned_cols=50 Identities=20% Similarity=0.211 Sum_probs=44.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++..
T Consensus 11 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CchheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3567899999999988 77788 99999999999999998999999998754
No 47
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.81 E-value=2.7e-09 Score=87.16 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=45.0
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
..+.+.|+||++.|.+ ..+++ |||.|+..||..|+..+.+||+||.++...
T Consensus 26 ~p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 26 APDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTES 76 (100)
T ss_dssp CSTTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred CcHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence 3557889999999988 77788 999999999999999889999999988643
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.81 E-value=1.8e-09 Score=89.35 Aligned_cols=48 Identities=29% Similarity=0.582 Sum_probs=41.1
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-CCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~ 185 (365)
...|+||++.|.+ ...++ |||.||..||..|+.. +.+||+||.++...
T Consensus 23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence 4589999999876 55577 9999999999999987 67899999988643
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.80 E-value=3.9e-09 Score=85.90 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=44.7
Q ss_pred CCCCCcCccccCcccCCCceeecCCCC-CccchhhHHHHHhcCCCCCcccccccCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCS-HAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~-H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
..+.+.|+||++.|.+ ..+++ || |.|+..||..|+..+.+||+||.++...
T Consensus 19 ~p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMD 70 (98)
T ss_dssp CCTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred CcHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence 3457889999999988 66788 99 9999999999999989999999988643
No 50
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.75 E-value=1.2e-08 Score=79.72 Aligned_cols=56 Identities=20% Similarity=0.401 Sum_probs=42.6
Q ss_pred CCCCCcCccccCcccCCCcee-ecCCCCCccchhhHHHHHhc-CCCCCcccccccCCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLR-LLPMCSHAFHINCIDTWLLS-NSTCPLCRDTLFTPGF 187 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~-~lp~C~H~FH~~CI~~Wl~~-~~sCPlCR~~l~~~~~ 187 (365)
..+...|+||++.+...+... -++ |||.||..|+..|+.. ...||+||.++.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456678999999986544332 234 9999999999998754 5679999999876543
No 51
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.74 E-value=3.2e-09 Score=79.60 Aligned_cols=47 Identities=19% Similarity=0.437 Sum_probs=39.8
Q ss_pred CCCcCccccCcccCCCceeec--CCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLL--PMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~l--p~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+...|.||++.+.+ ...+ | |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 34579999998766 4444 8 9999 899999999998899999999874
No 52
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.74 E-value=4.4e-09 Score=104.94 Aligned_cols=48 Identities=23% Similarity=0.677 Sum_probs=41.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~~~ 185 (365)
...|+||++.+.. +..+| |||.||..||..|+. .+.+||+||.++...
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999866 67788 999999999999999 678999999988543
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.72 E-value=5e-09 Score=76.31 Aligned_cols=47 Identities=26% Similarity=0.616 Sum_probs=39.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
.+...|+||++.|.. .++++ |+|.||..||..| ...||+||..+..+
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 456789999999986 56788 9999999999884 67899999987643
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.70 E-value=4.3e-09 Score=87.48 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=39.1
Q ss_pred CCCcCccccCcccCCCceeec-CCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLL-PMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~l-p~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
+...|+||++.|.. ...+ + |||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcc
Confidence 35689999999976 5556 6 999999999999987 789999998743
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=3.7e-09 Score=91.36 Aligned_cols=50 Identities=20% Similarity=0.455 Sum_probs=41.9
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC-CCCcccccccC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS-TCPLCRDTLFT 184 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~-sCPlCR~~l~~ 184 (365)
..+...|+||++.|.+ ...++ |||.||..||..|+.... +||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRR---PFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcC---cEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 3456789999999987 45577 999999999999998665 89999998743
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.63 E-value=8.2e-09 Score=101.21 Aligned_cols=53 Identities=23% Similarity=0.634 Sum_probs=41.2
Q ss_pred CCCCcCccccCcccCCCcee----ecCCCCCccchhhHHHHHhcC-----------CCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLR----LLPMCSHAFHINCIDTWLLSN-----------STCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~----~lp~C~H~FH~~CI~~Wl~~~-----------~sCPlCR~~l~~ 184 (365)
....+|+||++.+.++..+. ..+.|+|.||..||.+||++. .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 35678999999998843331 233599999999999999753 359999998864
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.61 E-value=1.2e-08 Score=76.21 Aligned_cols=46 Identities=15% Similarity=0.459 Sum_probs=38.8
Q ss_pred CCcCccccCcccCCCceeec--CCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLL--PMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~l--p~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|.||++.+.+ ..++ | |||. |+..|+..|...+..||+||+++.
T Consensus 7 ~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4579999998655 3344 8 9998 999999999988889999999874
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.60 E-value=1.3e-08 Score=78.13 Aligned_cols=42 Identities=21% Similarity=0.645 Sum_probs=36.9
Q ss_pred CCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+||++.+.+ +..+| |||. ||..|+..| ..||+||.++.
T Consensus 24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 3579999999776 67788 9999 999999998 88999999874
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.59 E-value=2.3e-08 Score=93.23 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=42.7
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-CCCCcccccccC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-STCPLCRDTLFT 184 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l~~ 184 (365)
..+...|+||++.|.+ +.+++ |||.||..||..|+..+ .+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 3456789999999988 67788 99999999999999864 459999998854
No 60
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.55 E-value=3.8e-08 Score=79.05 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=39.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC------CCCCc--cccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN------STCPL--CRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~------~sCPl--CR~~ 181 (365)
.+.+.|+||++.|.+ ..+++.|||.|+..||..|+..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 456789999999987 55664599999999999999864 48999 9876
No 61
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.54 E-value=3e-08 Score=87.29 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=42.5
Q ss_pred CCCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-CCCCcccccccC
Q 039247 130 GLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-STCPLCRDTLFT 184 (365)
Q Consensus 130 ~~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l~~ 184 (365)
...+...|+||++.|.+ ...++ |||.||..||..|+... .+||+||.++..
T Consensus 14 ~~~~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 14 PLESKYECPICLMALRE---AVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCChhhcC---cEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 34556789999999987 45677 99999999999999864 489999998754
No 62
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.45 E-value=1.1e-07 Score=70.82 Aligned_cols=48 Identities=25% Similarity=0.621 Sum_probs=37.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCC--C---ccchhhHHHHHhc--CCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCS--H---AFHINCIDTWLLS--NSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~--H---~FH~~CI~~Wl~~--~~sCPlCR~~l~ 183 (365)
.+...|.||+++. ++.+ ++| |. | .||..||.+|+.. +.+||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~--~~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEEL--GNER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEEC--SCCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCC--CCce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4556899999983 3334 577 65 4 9999999999974 578999998774
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=73.03 Aligned_cols=42 Identities=21% Similarity=0.634 Sum_probs=35.4
Q ss_pred CcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+||++.+.+ +..+| |||. ||..|+.. ...||+||.++..
T Consensus 26 ~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence 479999999766 66788 9999 99999965 4789999998854
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.40 E-value=1e-07 Score=85.85 Aligned_cols=50 Identities=14% Similarity=0.155 Sum_probs=42.6
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-CCCCcccccccC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-STCPLCRDTLFT 184 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-~sCPlCR~~l~~ 184 (365)
..+.+.|+||++.|.+ +.+++ |||.|+..||..|+..+ .+||+|+.++..
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 3456789999999987 66778 99999999999999864 579999998754
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.37 E-value=1.4e-07 Score=75.33 Aligned_cols=48 Identities=21% Similarity=0.585 Sum_probs=39.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc--------CCCCCc--cccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS--------NSTCPL--CRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~sCPl--CR~~ 181 (365)
+..+|+||++++...+.+.+.+ |+|.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999998766666666 9999999999999863 236999 9987
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.5e-07 Score=70.23 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=37.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.+...|.||++.+.+ +..+| |+|. |+..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 345689999998765 77889 9999 99999984 5789999998854
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=2.3e-07 Score=72.37 Aligned_cols=43 Identities=28% Similarity=0.657 Sum_probs=36.6
Q ss_pred CCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|.||++.+.+ +..+| |||. |+..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 3479999998766 77888 9999 999999987 399999998854
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.18 E-value=5.4e-07 Score=67.11 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=41.7
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
+.|+||++.|.+ ..+++.|||+|...||.+|+..+.+||+++.+|...+
T Consensus 4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhh
Confidence 579999999986 4566239999999999999998889999999886543
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.15 E-value=5e-07 Score=88.92 Aligned_cols=44 Identities=27% Similarity=0.742 Sum_probs=38.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCc-cchhhHHHHHhcCCCCCccccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHA-FHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~-FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
.+...|+||++.+.. +..+| |||. ||..|+..| ..||+||.++.
T Consensus 293 ~~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 293 QEERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp HTTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred cCCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 456789999999876 77788 9999 999999988 78999999874
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.9e-06 Score=81.78 Aligned_cols=50 Identities=22% Similarity=0.504 Sum_probs=40.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcC--CCCCc--ccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN--STCPL--CRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~--~sCPl--CR~~l~~ 184 (365)
.....|+||++.|.+ .|+.+. |||.|+..||..|+..+ .+||+ ||..+..
T Consensus 179 ~~el~CPIcl~~f~D--PVts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEA--PLISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSS--EEEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccC--CeeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 456789999999976 344445 99999999999999865 46999 9997754
No 71
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.75 E-value=2.2e-05 Score=73.44 Aligned_cols=50 Identities=22% Similarity=0.535 Sum_probs=40.4
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC--CCCcccccccCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS--TCPLCRDTLFTP 185 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~--sCPlCR~~l~~~ 185 (365)
....|+||.+....+. ..++|+|.||..|+..|++.+. .||.|+.++...
T Consensus 179 ~i~~C~iC~~iv~~g~---~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ---SCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSCE---ECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCCcCcchhhHHhCCc---ccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 3568999999988753 2345999999999999998754 899999987544
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.74 E-value=1.7e-05 Score=64.74 Aligned_cols=45 Identities=27% Similarity=0.568 Sum_probs=36.7
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHh-cCCCCCccccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLF 183 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~ 183 (365)
.|.+|--.+. ...|+.| |+|+||.+|+..|.+ ..++||.|+.++.
T Consensus 3 fC~~C~~Pi~--iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK--VYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS--EEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeE--EEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 4777855544 4678899 999999999999985 4678999999874
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.59 E-value=0.02 Score=46.05 Aligned_cols=51 Identities=27% Similarity=0.453 Sum_probs=40.4
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
..+...|-.|+-++.. ++.. ..|.+|..|+..-|.....||+|..+|.+.-
T Consensus 25 ~~G~~nCKsCWf~~k~---LV~C--~dHYLCl~CLtlmL~~SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG---LVEC--NNHYLCLNCLTLLLSVSNRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCSS---EEEC--SSCEEEHHHHHHTCSSSSEETTTTEECCCCS
T ss_pred ccCcccChhhccccCC---eeee--cchhhHHHHHHHHHhhccCCcccCCcCCcce
Confidence 3456789999988554 4331 3599999999999888999999999997754
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.58 E-value=0.073 Score=39.91 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=33.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
....|.||.+. ++ +..-..|...||..|++..|..-. .||.|...
T Consensus 11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 34579999753 34 445556999999999998887644 59999764
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.27 E-value=0.14 Score=40.39 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHH
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~W 168 (365)
...|.||++.+.......-+. |+|.|+..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence 457999998754333333366 9999999999983
No 76
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=87.95 E-value=0.33 Score=35.47 Aligned_cols=46 Identities=26% Similarity=0.650 Sum_probs=32.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
.+...|.||... ++ +..-..|...||..|+..-+...+ .||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GE-IILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SS-EEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---Cc-EEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 445679999863 33 444456999999999998654322 59999753
No 77
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=86.85 E-value=0.19 Score=36.79 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=34.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-----cCCCCCcccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-----SNSTCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~sCPlCR~ 180 (365)
.+...|+||...+.++...+..-.|..-||..|+.--.. ....||.|+.
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 355679999988765544444446999999999865322 2446999975
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.92 E-value=0.27 Score=35.99 Aligned_cols=47 Identities=26% Similarity=0.510 Sum_probs=32.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDTL 182 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l 182 (365)
.+...|.||... ++ +..-..|...||..|+..-|.... .||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 345679999853 33 444445999999999986554322 599997643
No 79
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=85.66 E-value=0.24 Score=43.64 Aligned_cols=45 Identities=31% Similarity=0.590 Sum_probs=33.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
++..|.||... ++ +.....|...||..|+.+-|...+ .||.|+..
T Consensus 3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 34679999854 44 445556999999999987766433 59999864
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=85.23 E-value=0.25 Score=44.53 Aligned_cols=47 Identities=36% Similarity=0.593 Sum_probs=34.1
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDTL 182 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l 182 (365)
.+...|.+|... ++ +.....|...||..|+.+-|...+ .||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345679999754 33 555566999999999988766433 599998643
No 81
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=84.69 E-value=0.46 Score=33.10 Aligned_cols=44 Identities=34% Similarity=0.726 Sum_probs=29.8
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~ 180 (365)
.|.||...-..+ .+..-..|...||..|+++=|...+ .||.|+.
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488998764333 3444456999999999976444322 4999965
No 82
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.40 E-value=1.4 Score=34.72 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~W 168 (365)
..+..|.||- .|..++... ...|+-+||..|+.+-
T Consensus 13 ~~D~~C~VC~-~~t~~~l~p-CRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCE-VWTAESLFP-CRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTC-CCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred CCCcccCccc-cccccceec-cccccccccHhhcccc
Confidence 3566899995 333333332 2349999999999985
No 83
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=81.82 E-value=0.63 Score=41.54 Aligned_cols=47 Identities=21% Similarity=0.400 Sum_probs=34.2
Q ss_pred CcCccccCcccCCCc---eeecCCCCCccchhhHHHH------Hh-----cCCCCCccccc
Q 039247 135 FDCAVCLCEFSEKDK---LRLLPMCSHAFHINCIDTW------LL-----SNSTCPLCRDT 181 (365)
Q Consensus 135 ~~CaICl~~f~~~~~---v~~lp~C~H~FH~~CI~~W------l~-----~~~sCPlCR~~ 181 (365)
..|+||...+.+++. .+....|..-||..|+.-- +. ..-.||.|+..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 369999999988763 5555569999999998431 11 15689999774
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.84 E-value=0.28 Score=35.09 Aligned_cols=45 Identities=31% Similarity=0.694 Sum_probs=31.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~ 180 (365)
.+...|.||... ++ +..-..|...||..|+.+=|...+ .||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SC-CEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---Ce-EEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 445679999874 33 444456999999999986554332 4888854
No 85
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=79.40 E-value=0.6 Score=38.05 Aligned_cols=45 Identities=27% Similarity=0.657 Sum_probs=30.9
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~ 180 (365)
.|.||...-.+++.+..-..|...||..|+++-|..-+ .||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57888765333344555556999999999987555432 5999974
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=78.65 E-value=0.35 Score=35.04 Aligned_cols=47 Identities=30% Similarity=0.706 Sum_probs=32.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l~ 183 (365)
+...|.||... ++ +..-..|...||..|+.+=|...+ .||.|+....
T Consensus 4 ~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQ-LLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SS-CEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---Cc-EEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 45679999874 33 444456999999999986554332 4999976543
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=78.63 E-value=0.47 Score=35.75 Aligned_cols=50 Identities=16% Similarity=0.344 Sum_probs=34.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc----CCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS----NSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~sCPlCR~~l~ 183 (365)
+...|.||..... ++.++..-.|.-.||..|+..-+.. .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3456999987643 3344455569999999999765442 235999987653
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=76.60 E-value=0.46 Score=35.15 Aligned_cols=46 Identities=30% Similarity=0.585 Sum_probs=32.3
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
.+...|.||... ++ +.....|...||..|+.+-|...+ .||.|...
T Consensus 6 ~~~~~C~vC~~~---g~-ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GE-LICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SS-CEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CC-EEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 355689999864 33 444456999999999986554332 49999653
No 89
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.23 E-value=1.6 Score=33.21 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=32.5
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-----cCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-----SNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~sCPlCR~~l 182 (365)
+...| ||...+.++...+..-.|..-||..|+.--.. ....||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 34567 89888754444444456999999999953221 344699998743
No 90
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=76.19 E-value=0.87 Score=40.56 Aligned_cols=43 Identities=30% Similarity=0.607 Sum_probs=30.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
..|.+|... ++ +.....|...||..|+.+=+.... .||.|+..
T Consensus 3 ~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 3 TICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCBTTTCCC---SS-CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CcCccCCCC---Cc-eeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 479999855 44 334445999999999976554322 59999765
No 91
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=75.65 E-value=1.8 Score=47.61 Aligned_cols=49 Identities=27% Similarity=0.284 Sum_probs=42.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCC-CccchhhHHHHHhcCCCCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCS-HAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~-H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.+.+.|+|-++-+.+ +.++| .| +.|-..+|..||.++.+||+=|.++..
T Consensus 889 P~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456789999999988 77888 76 689999999999999999999998854
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=75.64 E-value=2.3 Score=33.56 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=33.0
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
.+...|.||... ++ +.....|.-.||..|+++=|..-+ .||.|+..
T Consensus 23 ~n~~~C~vC~~~---g~-LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC---CC-EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 455689999865 33 444456899999999987665433 59999763
No 93
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.22 E-value=2.2 Score=33.89 Aligned_cols=45 Identities=29% Similarity=0.604 Sum_probs=28.8
Q ss_pred CCCCcCccccCcccCCCceeecCC--CC-CccchhhHHHHHhc----CCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPM--CS-HAFHINCIDTWLLS----NSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~sCPlCR~~ 181 (365)
.+...| ||..... ++ ++..-+ |. ..||..|+. |.. .-.||.|+..
T Consensus 34 ~e~~yC-iC~~~~~-g~-MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 34 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCCBCS-TTCCBCC-SC-CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCcEE-ECCCCCC-CC-EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 445668 9987643 33 334444 55 689999997 333 2359999764
No 94
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.13 E-value=0.43 Score=37.84 Aligned_cols=48 Identities=29% Similarity=0.566 Sum_probs=33.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~ 181 (365)
+...|.||...-.. +.+.....|...||..|+.+=|..-+ .||.|+..
T Consensus 15 ~~~~C~vC~~~~~~-~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDED-DKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGG-GGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCC-CCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 44579999876433 34545556999999999985444322 49999764
No 95
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.48 E-value=1.2 Score=35.86 Aligned_cols=47 Identities=26% Similarity=0.579 Sum_probs=31.2
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc----CCCCCccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS----NSTCPLCR 179 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~----~~sCPlCR 179 (365)
.++..|.||.+.-...+.+ .-..|...||..|+...+.. .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll-~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQF-FCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSE-ECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCe-ECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 3566899998763322223 43459999999999887642 22477664
No 96
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=73.30 E-value=1.2 Score=34.85 Aligned_cols=52 Identities=19% Similarity=0.423 Sum_probs=34.6
Q ss_pred CCCCcCccccCcc-cCCCceeecCCCCCccchhhHHHHHhc--CCCCCccccccc
Q 039247 132 KEPFDCAVCLCEF-SEKDKLRLLPMCSHAFHINCIDTWLLS--NSTCPLCRDTLF 183 (365)
Q Consensus 132 ~~~~~CaICl~~f-~~~~~v~~lp~C~H~FH~~CI~~Wl~~--~~sCPlCR~~l~ 183 (365)
.+...|.||...- .+.+.+.....|.-.||..|+..-+.- .-.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccc
Confidence 3456899998763 233355555679999999999753321 225999977543
No 97
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.30 E-value=1.5 Score=33.07 Aligned_cols=49 Identities=20% Similarity=0.469 Sum_probs=32.9
Q ss_pred CCCCcCccccCcc-cCCCceeecCCCCCccchhhHHHHHhc--CCCCCcccc
Q 039247 132 KEPFDCAVCLCEF-SEKDKLRLLPMCSHAFHINCIDTWLLS--NSTCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f-~~~~~v~~lp~C~H~FH~~CI~~Wl~~--~~sCPlCR~ 180 (365)
.+...|.||...- .+++.+..-..|.-.||..|+..-..- .-.||.|+.
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 4456799998764 234455566679999999999753211 125888865
No 98
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.27 E-value=1.1 Score=34.42 Aligned_cols=44 Identities=30% Similarity=0.602 Sum_probs=28.9
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-----CCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-----STCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-----~sCPlCR~ 180 (365)
.|.||...-. +..+..-..|...||..|+++=|... =.||.|+.
T Consensus 28 ~C~vC~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHE-PNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCC-STTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCC-CCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 5788876422 33444555699999999998544321 25888864
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=70.11 E-value=1.5 Score=35.02 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=29.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhc---CCCCCcccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS---NSTCPLCRD 180 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~---~~sCPlCR~ 180 (365)
..| ||......+..| ....|.-.||..|+..=+.. .-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi-~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMI-CCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEE-EBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEE-EcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 457 887765555444 44459999999998753322 236999964
No 100
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=68.65 E-value=2.8 Score=30.51 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=34.2
Q ss_pred CCCCcCccccCcccC-CCceeecCCCCCccchhhHHHHHhc-------CCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLS-------NSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~-------~~sCPlCR~~ 181 (365)
.+...|.||...... +..+..-..|.-.||..|+..=+.. .-.||.|+..
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 455689999976532 3445555679999999998864421 2259998654
No 101
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=68.31 E-value=1.1 Score=34.52 Aligned_cols=44 Identities=39% Similarity=0.697 Sum_probs=27.7
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-----CCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-----STCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-----~sCPlCR~ 180 (365)
.|.||...-.. +.+..-..|...||..|+++-|... =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 35566554322 3444445689999999998755432 25999875
No 102
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.02 E-value=1.6 Score=34.17 Aligned_cols=50 Identities=18% Similarity=0.391 Sum_probs=35.5
Q ss_pred CCcCccccCcccC-CCceeecCCCCCccchhhHHHHHhc--------CCCCCccccccc
Q 039247 134 PFDCAVCLCEFSE-KDKLRLLPMCSHAFHINCIDTWLLS--------NSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~-~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~sCPlCR~~l~ 183 (365)
...|.||...-.. +..+.....|...||..|+.+-|.. .-.|+.|+....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 4579999876432 2455566679999999999876542 225999987654
No 103
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=67.86 E-value=1.1 Score=38.87 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=32.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHH-----hcCCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL-----LSNSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl-----~~~~sCPlCR~~ 181 (365)
.+...| +|.....++...+....|...||..|+.--. ...-.||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 345579 9988765444455555699999999995321 123469999874
No 104
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=67.49 E-value=1.3 Score=33.21 Aligned_cols=44 Identities=39% Similarity=0.720 Sum_probs=27.8
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhc-----CCCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-----NSTCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-----~~sCPlCR~ 180 (365)
.|.||...-. +..+..-..|...||..|+++=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~-~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQD-PDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSC-GGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCC-CCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3567765322 2344455569999999999854443 225888864
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=66.32 E-value=2.5 Score=29.66 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.5
Q ss_pred cCccccCcccCCCceeecC-CCCCccchhhHHHHH----hcCCCCCccc
Q 039247 136 DCAVCLCEFSEKDKLRLLP-MCSHAFHINCIDTWL----LSNSTCPLCR 179 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp-~C~H~FH~~CI~~Wl----~~~~sCPlCR 179 (365)
.|.+|...+.+++..+.-- .|..-||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 3678888876555455544 599999999985321 2456799885
No 106
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=66.15 E-value=5.8 Score=33.93 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-----------cCCCCCcccc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-----------SNSTCPLCRD 180 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-----------~~~sCPlCR~ 180 (365)
...+..|.||.+. ++ +.....|-.+||..||.+=+. ..-.||+|+.
T Consensus 60 Dg~~d~C~vC~~G---G~-LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCC---SS-EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCC---Cc-EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456789999875 44 444456999999999997652 1225999964
No 107
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=66.09 E-value=4.2 Score=30.05 Aligned_cols=33 Identities=24% Similarity=0.604 Sum_probs=26.4
Q ss_pred CCcCccccCcccCCCceeecC-CCCCccchhhHH
Q 039247 134 PFDCAVCLCEFSEKDKLRLLP-MCSHAFHINCID 166 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp-~C~H~FH~~CI~ 166 (365)
...|.+|...+.+++..+... .|.--||..|+.
T Consensus 8 ~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 457999999988776666665 699999999984
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.60 E-value=4.1 Score=34.35 Aligned_cols=47 Identities=23% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCCCcCccccCcccCCCceeecCCCCCccchhhHHHHH------hc-----CCCCCccccc
Q 039247 131 LKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL------LS-----NSTCPLCRDT 181 (365)
Q Consensus 131 ~~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl------~~-----~~sCPlCR~~ 181 (365)
...+..|.||.+- ++ +..-..|-.+||..||.+-+ .. .=.|++|+..
T Consensus 54 Dg~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3455679999865 33 44445689999999999742 11 1269999653
No 109
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=65.04 E-value=4.6 Score=30.32 Aligned_cols=45 Identities=29% Similarity=0.604 Sum_probs=28.7
Q ss_pred CCCCcCccccCcccCCCceeecCC--CC-CccchhhHHHHHhcC----CCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPM--CS-HAFHINCIDTWLLSN----STCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~~----~sCPlCR~~ 181 (365)
.+...| ||..... ++ ++..-. |. ..||..|+. |... -.||.|+..
T Consensus 14 ~~~~~C-~C~~~~~-g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 14 NEPTYC-LCHQVSY-GE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp TSCCCS-TTCCCSC-SS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSC
T ss_pred CCCCEE-ECCCCCC-CC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCcc
Confidence 345568 8987532 33 444445 65 689999997 4332 259999764
No 110
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=64.05 E-value=1.9 Score=39.81 Aligned_cols=44 Identities=39% Similarity=0.697 Sum_probs=25.8
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcC-----CCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN-----STCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~-----~sCPlCR~ 180 (365)
.|.+|...-.. ..+.....|...||..|+++=|... =.||.|+.
T Consensus 176 ~C~vC~~~~~~-~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCC-CCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 47777654222 3344555699999999999644431 25999965
No 111
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.56 E-value=2.2 Score=32.45 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCCCcCccccCcccCCCceeec-CCCCCccchhhHHHHHh---------cCCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLL-PMCSHAFHINCIDTWLL---------SNSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~l-p~C~H~FH~~CI~~Wl~---------~~~sCPlCR~~ 181 (365)
.+...| ||......+..|.-- +.|..-||..|+.---. ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 345678 798874444444333 05999999999954211 24469999764
No 112
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.01 E-value=2.9 Score=31.42 Aligned_cols=46 Identities=20% Similarity=0.441 Sum_probs=30.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHH---------hcCCCCCccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL---------LSNSTCPLCRDT 181 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl---------~~~~sCPlCR~~ 181 (365)
...| ||......+..|. .-.|..-||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~-Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMIC-CDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEE-CSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEE-eCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3567 8988765434444 34599999999994221 245679999763
No 113
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=60.61 E-value=4.4 Score=29.64 Aligned_cols=43 Identities=23% Similarity=0.493 Sum_probs=29.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLC 178 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlC 178 (365)
..|-.|...|.+.. ...-++|++.|+.+|=.---..-.+||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 35999999986422 24467799999999943322233469988
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=59.56 E-value=2.4 Score=31.57 Aligned_cols=47 Identities=21% Similarity=0.487 Sum_probs=30.5
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlCR~ 180 (365)
.+...| ||..... ++..+....|..-||..|+.--.. ..-.||.|+.
T Consensus 17 ~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 455678 9987655 333444445999999999864321 2345888864
No 115
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=59.17 E-value=4.5 Score=32.58 Aligned_cols=48 Identities=25% Similarity=0.525 Sum_probs=34.1
Q ss_pred CcCccccCcccCCCceeecC-CCCCccchhhHHHHHh----------cCCCCCcccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLP-MCSHAFHINCIDTWLL----------SNSTCPLCRDTL 182 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp-~C~H~FH~~CI~~Wl~----------~~~sCPlCR~~l 182 (365)
..|.||...+.++...+..- .|..-||..|+.-=.. ..-.||.|+...
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 46999999987765555554 6999999999843210 234699998753
No 116
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=56.47 E-value=26 Score=24.08 Aligned_cols=11 Identities=27% Similarity=0.323 Sum_probs=4.9
Q ss_pred HHHHHHhhCCC
Q 039247 65 LLVRFLVKHPS 75 (365)
Q Consensus 65 llvr~l~rrr~ 75 (365)
+++.++.|+++
T Consensus 28 ~~~~~~~RRRr 38 (44)
T 2l2t_A 28 LTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHhhhhh
Confidence 34444445443
No 117
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.17 E-value=1.8 Score=32.40 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=31.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHH----hcCCCCCccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL----LSNSTCPLCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl----~~~~sCPlCR~~ 181 (365)
+...| ||.....+++..+..-.|..-||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 34568 7987765554344445699999999986532 123469999763
No 118
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=53.59 E-value=18 Score=29.10 Aligned_cols=46 Identities=20% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCcCccccCccc-----CCCceeecCCCCCccchhhHHHH------Hh-cCCCCCccc
Q 039247 134 PFDCAVCLCEFS-----EKDKLRLLPMCSHAFHINCIDTW------LL-SNSTCPLCR 179 (365)
Q Consensus 134 ~~~CaICl~~f~-----~~~~v~~lp~C~H~FH~~CI~~W------l~-~~~sCPlCR 179 (365)
...|.+|+..=. ..+++..-..|+..||..|+..+ +. ..-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457999987521 22345555569999999999532 21 223577775
No 119
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.43 E-value=2.6 Score=33.91 Aligned_cols=45 Identities=22% Similarity=0.482 Sum_probs=28.9
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcC----CCCCccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSN----STCPLCRDT 181 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~----~sCPlCR~~ 181 (365)
.|.||...-.+ +.+..-..|...||..|+++=|... -.||.|+.-
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 46677655333 3344555699999999998655432 248888653
No 120
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=52.31 E-value=9.2 Score=31.05 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCCccchhhHHHHHhcCC----CCCcccccccC
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLP--MCSHAFHINCIDTWLLSNS----TCPLCRDTLFT 184 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp--~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l~~ 184 (365)
.++..|.+|.+. ++ +..-. .|-..||..|+. |...+ .||.|+-.+..
T Consensus 13 ~~~~~C~~C~~~---G~-ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 13 MHEDYCFQCGDG---GE-LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp SSCSSCTTTCCC---SE-EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred CCCCCCCcCCCC---Cc-EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 456679999842 33 43433 488999999998 54432 49988665543
No 121
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=51.73 E-value=17 Score=28.36 Aligned_cols=39 Identities=18% Similarity=0.426 Sum_probs=30.3
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS 171 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~ 171 (365)
....|.+|.+.+++..-|..-..=.|.||..|-...+++
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456799999999986655433334699999999998875
No 122
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=49.78 E-value=4.1 Score=29.46 Aligned_cols=43 Identities=30% Similarity=0.617 Sum_probs=27.4
Q ss_pred CCCcCccccCcccCCCceeecCC--CC-CccchhhHHHHHhcC----CCCCcccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPM--CS-HAFHINCIDTWLLSN----STCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~~----~sCPlCR~ 180 (365)
+...| ||.... .+ .++.-.+ |. ..||..|+. |... -.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YG-EMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CS-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CC-CeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 44567 898753 23 3444445 65 699999997 3332 25999864
No 123
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=48.93 E-value=2.1 Score=31.75 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=27.5
Q ss_pred CCcCccccCcccCCCceeec-CCCCCccchhhHHHHH---h-----cCCCCCcccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLL-PMCSHAFHINCIDTWL---L-----SNSTCPLCRD 180 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~l-p~C~H~FH~~CI~~Wl---~-----~~~sCPlCR~ 180 (365)
...| ||......+..|.-- +.|..-||..|+.--- . .+-.||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 3457 797655554444332 1388899999984210 0 1346999975
No 124
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.80 E-value=16 Score=26.14 Aligned_cols=40 Identities=18% Similarity=0.339 Sum_probs=29.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.+.+.+.. . -+..||..| ..|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~-a-~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLE-Y-GGQTWHEHC--------FLCSGCEQPLGS 45 (72)
T ss_dssp CBCSSSCCBCCSSSCEEC-S-TTCCEETTT--------CBCTTTCCBTTT
T ss_pred CCCccCCCccccCccEEE-E-CccccCccc--------CeECCCCCcCCC
Confidence 479999999887544432 2 578999888 468899887754
No 125
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.19 E-value=17 Score=26.10 Aligned_cols=40 Identities=23% Similarity=0.485 Sum_probs=28.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+.|-..+...+.+... -+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGC--------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTT--------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccC--------CcccccCCcCC
Confidence 35799999988764433322 568899888 46889988874
No 126
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.63 E-value=20 Score=25.74 Aligned_cols=41 Identities=24% Similarity=0.398 Sum_probs=29.7
Q ss_pred CCcCccccCcccC--CCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSE--KDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+.|-+.+.. ++.+.. . -+..||.+| ..|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~-a-~~~~wH~~C--------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYIS-F-EERQWHNDC--------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEE-C-SSCEECTTT--------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEE-E-CCcccCccc--------CEeccCCCcCCC
Confidence 3579999999886 333432 2 578999988 468999888753
No 127
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=47.60 E-value=4.4 Score=29.30 Aligned_cols=43 Identities=30% Similarity=0.615 Sum_probs=26.8
Q ss_pred CCCcCccccCcccCCCceeecCC--CC-CccchhhHHHHHhcC----CCCCcccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPM--CS-HAFHINCIDTWLLSN----STCPLCRD 180 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~~----~sCPlCR~ 180 (365)
+...| ||..... + .++.--. |. ..||..|+. |... -.||.|+.
T Consensus 9 e~~~C-~C~~~~~-g-~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-G-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-S-EEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-C-CEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 44567 8987532 3 3444445 44 689999997 4432 25998864
No 128
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=47.51 E-value=14 Score=28.74 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=26.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHHH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~W 168 (365)
.+...|.+|...|..-..---...||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4456899999999864333334469999999997553
No 129
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=46.82 E-value=12 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.382 Sum_probs=26.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWL 169 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl 169 (365)
+...|.+|...|..-..---...||++|+..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 3457999999998643333344699999999976543
No 130
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=46.82 E-value=15 Score=28.07 Aligned_cols=36 Identities=17% Similarity=0.366 Sum_probs=26.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~W 168 (365)
+...|.+|...|..-..---...||++|+..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456799999999864333334469999999996553
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.39 E-value=2.4 Score=34.53 Aligned_cols=46 Identities=22% Similarity=0.642 Sum_probs=30.1
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCC----CCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNS----TCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~----sCPlCR~~l 182 (365)
.|.||...-..+ .+..-..|...||..|+.+=|...+ .||.|+..+
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 577887653333 3444456999999999986444322 488886644
No 132
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.35 E-value=37 Score=23.26 Aligned_cols=34 Identities=18% Similarity=0.049 Sum_probs=16.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 41 RISPAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 41 ~isp~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
+...+..-++.-+++++++.++..+++|-..+++
T Consensus 8 ~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 8 RTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 3444444444434444455555556666544444
No 133
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=46.10 E-value=8.6 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=23.5
Q ss_pred CcCccccCcccC------CCceeecCCCCCccchhhHHHH
Q 039247 135 FDCAVCLCEFSE------KDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 135 ~~CaICl~~f~~------~~~v~~lp~C~H~FH~~CI~~W 168 (365)
..|.||+..-.. .+.+..-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 369999875421 2344444569999999999765
No 134
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=46.10 E-value=15 Score=28.03 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=25.8
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhHHH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT 167 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~ 167 (365)
.+...|.+|...|..-..---...||++|+..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 344579999999986433333446999999999654
No 135
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=46.05 E-value=12 Score=30.99 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=25.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT 167 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~ 167 (365)
+...|.+|...|..-..---...||++||..|...
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 34579999999986433333446999999999544
No 136
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.66 E-value=17 Score=26.39 Aligned_cols=42 Identities=19% Similarity=0.446 Sum_probs=30.7
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....|+.|-..+.+.+.+... -+..||..| ..|-.|..+|..
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 51 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNS--NGELYHEQC--------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEE--TTEEECTTT--------CCCTTTCCCCGG
T ss_pred CCCCchhcCCccCCCceEEEe--CccEecccc--------CeECCCCCCCCC
Confidence 345799999998865555332 567899888 468889887754
No 137
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.10 E-value=73 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVR 68 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr 68 (365)
.|.+++++.+++.++++.+++.++.+
T Consensus 10 vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655555554444443
No 138
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.93 E-value=15 Score=26.85 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=30.9
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+.|-+.+.+++.+.. -+..||..| ..|-.|+.+|..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS---LGKDWHKFC--------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE---TTEEEETTT--------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEE---CCeEeeCCC--------CCCCCCCCccCC
Confidence 4579999999987665543 568899888 468999888854
No 139
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.89 E-value=15 Score=27.38 Aligned_cols=40 Identities=28% Similarity=0.571 Sum_probs=30.6
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
....|+.|-..+..++.+.. -+..||.+| ..|-.|+.+|.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLA---LDKQWHVSC--------FKCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEE---TTEEECTTT--------CBCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEE---CCccccccc--------CCcCcCCCCcC
Confidence 34579999999887665554 467899888 46889988774
No 140
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.34 E-value=17 Score=27.73 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCCCcCccccCcccCCCceeecCCCCCccchhhH
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCI 165 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI 165 (365)
.+...|.+|...|..-..---...||.+|+..|.
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 3446799999999753322223359999999883
No 141
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.27 E-value=14 Score=26.51 Aligned_cols=40 Identities=18% Similarity=0.365 Sum_probs=29.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.+.+.+... -+..||..| ..|-.|..+|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETC--------FICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTT--------TCCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccC--------CcccccCCccCC
Confidence 4799999998876544332 467899888 468899887754
No 142
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.62 E-value=18 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=30.2
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.+.+.+... -+..||..| ..|-.|+.+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEY--KGTVWHKDC--------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEEC--SSCEEETTT--------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEE--Ccccccccc--------CchhhCCCccCC
Confidence 5799999999876654332 578899888 468899887754
No 143
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=43.48 E-value=12 Score=33.52 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDT 167 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~ 167 (365)
+...|.+|...|.--..---...||++||..|...
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 34689999999976433333446999999998554
No 144
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=43.45 E-value=3.7 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
...|..|...|..-..---...||.+||..|..........|-.|..-+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHHH
Confidence 3579999999976333233446999999999766555556788886644
No 145
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=43.17 E-value=5 Score=39.15 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhc-------CCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS-------NSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~-------~~sCPlCR~~l 182 (365)
+...|.+|...|..-..-.-...||++||..|...++.. ...|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345799999998754322233459999999998766421 23477775544
No 146
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.60 E-value=13 Score=33.72 Aligned_cols=36 Identities=17% Similarity=0.468 Sum_probs=26.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHH
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTW 168 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~W 168 (365)
+...|.+|...|..-..---...||++||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 345899999999864333334569999999996543
No 147
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.14 E-value=24 Score=26.32 Aligned_cols=43 Identities=30% Similarity=0.569 Sum_probs=31.8
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCCC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTPG 186 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~~ 186 (365)
....|+.|-..+...+.+.. -+..||..| ..|-.|...|....
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a---~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCV---NGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCB---TTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCCcccCCCcccceEEEE---CCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 34579999999877665543 568899998 46889988875443
No 148
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.96 E-value=18 Score=26.83 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHH
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCID 166 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~ 166 (365)
..|.+|...|..-..---...||++|+..|..
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 47999999998643323334599999999954
No 149
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=41.42 E-value=51 Score=23.62 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 039247 44 PAVLFIIVILAVLFFISGLLHLLVR 68 (365)
Q Consensus 44 p~iliIIvILavv~~i~~ll~llvr 68 (365)
|.+++++.+++.++++.+++.++.+
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444443
No 150
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=41.27 E-value=27 Score=23.91 Aligned_cols=8 Identities=0% Similarity=0.285 Sum_probs=3.2
Q ss_pred HHHhhCCC
Q 039247 68 RFLVKHPS 75 (365)
Q Consensus 68 r~l~rrr~ 75 (365)
.+++|+++
T Consensus 32 ~~~~RRr~ 39 (44)
T 2ks1_B 32 GLFMRRRH 39 (44)
T ss_dssp HHHHHTTT
T ss_pred HHHhhhhH
Confidence 33444443
No 151
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=40.92 E-value=15 Score=30.93 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCCCcCccccCccc-CCCceeecCCCCCccchhhHH
Q 039247 132 KEPFDCAVCLCEFS-EKDKLRLLPMCSHAFHINCID 166 (365)
Q Consensus 132 ~~~~~CaICl~~f~-~~~~v~~lp~C~H~FH~~CI~ 166 (365)
.+...|++|...|. ....-++...|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35678999999993 323334445699998888844
No 152
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=40.44 E-value=17 Score=29.26 Aligned_cols=37 Identities=19% Similarity=0.527 Sum_probs=28.0
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
.|+.|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 10 ~C~~C~~~I~~~e~~~~a--~~~~~H~~C--------F~C~~C~~~L 46 (123)
T 2l3k_A 10 LCASCDKRIRAYEMTMRV--KDKVYHLEC--------FKCAACQKHF 46 (123)
T ss_dssp CCSSSSCCCCTTCCCCCC--SSCCCCTTT--------CBCTTTCCBC
T ss_pred cccCCCCeecCCceEEEE--CCccccccc--------CccccCCCCC
Confidence 699999998875544322 578999988 4588898877
No 153
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=40.29 E-value=7.1 Score=28.45 Aligned_cols=44 Identities=30% Similarity=0.611 Sum_probs=27.0
Q ss_pred CCCCcCccccCcccCCCceeecCC--CC-CccchhhHHHHHhc----CCCCCcccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPM--CS-HAFHINCIDTWLLS----NSTCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~--C~-H~FH~~CI~~Wl~~----~~sCPlCR~ 180 (365)
.+...| ||.... .++ ++.--+ |. ..||..|+. |.. .-.||.|+.
T Consensus 9 ~e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 9 NEPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp -CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 344567 898753 233 444445 44 799999997 332 235999965
No 154
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=38.71 E-value=12 Score=27.29 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=25.9
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.|+.|-+.+..++.+.. -+..||..| ..|-.|+.+|..
T Consensus 2 ~C~~C~~~I~~~~~v~a---~~~~~H~~C--------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTS---LGKDWHRPC--------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEE---TTEEEETTT--------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEE---CCccccCCC--------CCccccCccCCC
Confidence 48888888776555433 367888777 457888777643
No 155
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.15 E-value=45 Score=22.81 Aligned_cols=13 Identities=15% Similarity=-0.087 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhh
Q 039247 60 SGLLHLLVRFLVK 72 (365)
Q Consensus 60 ~~ll~llvr~l~r 72 (365)
.+++.+++|-..+
T Consensus 28 ~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 28 ALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHhhhhHh
Confidence 3334445554333
No 156
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=37.43 E-value=11 Score=29.69 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=27.4
Q ss_pred CCCCcCccccCcccCCCceeecCCCC---CccchhhHHHHHhc----CCCCCc-ccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLPMCS---HAFHINCIDTWLLS----NSTCPL-CRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp~C~---H~FH~~CI~~Wl~~----~~sCPl-CR~ 180 (365)
.+...| ||..... ++ ++....|. ..||..||. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~~-g~-MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVSY-GP-MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCCS-SS-EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCCC-CC-EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345568 8987532 33 44444555 689999996 322 235999 974
No 157
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=36.85 E-value=16 Score=23.99 Aligned_cols=11 Identities=18% Similarity=0.585 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 039247 44 PAVLFIIVILA 54 (365)
Q Consensus 44 p~iliIIvILa 54 (365)
+.-.++..++.
T Consensus 6 ~~~sIaagVvg 16 (35)
T 1iij_A 6 PVTFIIATVVG 16 (35)
T ss_dssp HHHHHHHHHHH
T ss_pred CCcEeHHHHHH
Confidence 33334444444
No 158
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=36.81 E-value=26 Score=34.48 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=29.3
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCC--CCCcccccccCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNS--TCPLCRDTLFTP 185 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~--sCPlCR~~l~~~ 185 (365)
..|++-+..|.. .++-.. |.|+-|.+ +..||. +.. .||+|...+...
T Consensus 250 L~CPlS~~ri~~--PvRg~~-C~HlQCFD-l~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 250 LQCPISYTRMKY--PSKSIN-CKHLQCFD-ALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SBCTTTSSBCSS--EEEETT-CCSSCCEE-HHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred ecCCCccccccc--cCcCCc-CCCcceEC-HHHHHHHhhcCCceeCCCCCcccCHH
Confidence 469988777665 466665 99974333 233443 233 599998876443
No 159
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=36.55 E-value=21 Score=25.29 Aligned_cols=41 Identities=20% Similarity=0.488 Sum_probs=30.7
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+.|-..+...+.+... -+..||..|+ .|-.|..+|..
T Consensus 11 ~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 11 SATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp TCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred CccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 45799999999877665432 5678998884 68889887754
No 160
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.98 E-value=37 Score=25.59 Aligned_cols=41 Identities=24% Similarity=0.538 Sum_probs=31.0
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
...|+.|-..+...+.+. . -+..||..| ..|-.|..+|...
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--A-NQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--C-SSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCceeEE--E-CCCEECCCC--------CeeCCCCCCCCCC
Confidence 457999999998766543 2 678999988 4588898877543
No 161
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=35.58 E-value=63 Score=19.67 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=5.5
Q ss_pred CchHHHHHHHHHH
Q 039247 42 ISPAVLFIIVILA 54 (365)
Q Consensus 42 isp~iliIIvILa 54 (365)
++|++..++.|+.
T Consensus 1 ispiVA~~lLIvi 13 (26)
T 3j1r_A 1 VSPVIATLLLILI 13 (26)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 3455544333333
No 162
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=35.55 E-value=41 Score=22.79 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=14.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Q 039247 43 SPAVLFIIVILAVLFFISGLLHLLVR 68 (365)
Q Consensus 43 sp~iliIIvILavv~~i~~ll~llvr 68 (365)
.|..++++.+++.++++.++..++.+
T Consensus 8 vp~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 8 IPIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555554444443
No 163
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.49 E-value=3.6 Score=31.76 Aligned_cols=37 Identities=24% Similarity=0.579 Sum_probs=22.4
Q ss_pred CccccCcccC--CCceeecCCCCCccchhhHHHHHhcCC
Q 039247 137 CAVCLCEFSE--KDKLRLLPMCSHAFHINCIDTWLLSNS 173 (365)
Q Consensus 137 CaICl~~f~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~ 173 (365)
|+-|-..+.. +......|.|+|.||..|-..|=..|.
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~ 66 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHR 66 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTT
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCchhhcCC
Confidence 6655443332 222244556999999999888844443
No 164
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.48 E-value=24 Score=25.66 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=28.5
Q ss_pred CcCccccCcccC--CCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 135 FDCAVCLCEFSE--KDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..|+.|-..+.. +..+... -+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a--~~~~wH~~C--------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICF--QDSQWHSEC--------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEE--TTEEEEGGG--------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEE--CCcccCccc--------CChhhCCCcCC
Confidence 479999999885 3333322 568899998 46889988875
No 165
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=34.23 E-value=31 Score=33.83 Aligned_cols=49 Identities=16% Similarity=0.349 Sum_probs=30.0
Q ss_pred CcCccccCcccCCCceeecCCCCCc--cchhhHHHHHhcCC--CCCcccccccCCC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHA--FHINCIDTWLLSNS--TCPLCRDTLFTPG 186 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~--FH~~CI~~Wl~~~~--sCPlCR~~l~~~~ 186 (365)
..|++-+..|.. .+|-.. |.|+ |-..-+.....+.. .||+|...+...+
T Consensus 216 L~CPlS~~ri~~--P~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~d 268 (360)
T 4fo9_A 216 LMCPLGKMRLTI--PCRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYES 268 (360)
T ss_dssp SBCTTTCSBCSS--EEEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGG
T ss_pred eeCCCccceecc--CCcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHH
Confidence 469988777765 466665 9997 44333333222333 5999998775433
No 166
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=33.81 E-value=1.7e+02 Score=23.02 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCcCccccCcccCC---CceeecCCCCCccchhhHHHHHh-cCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEK---DKLRLLPMCSHAFHINCIDTWLL-SNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~---~~v~~lp~C~H~FH~~CI~~Wl~-~~~sCPlCR~~l~ 183 (365)
...|.||-+++-.. +...-...|+--.|..|.+-=.. -++.||-|...+.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 35899999886532 22222224777789999865443 5678999998875
No 167
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=33.80 E-value=5.6 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=22.1
Q ss_pred CcCcc--ccCcccC--CCceeecC-----CCCCccchhhHHHH
Q 039247 135 FDCAV--CLCEFSE--KDKLRLLP-----MCSHAFHINCIDTW 168 (365)
Q Consensus 135 ~~CaI--Cl~~f~~--~~~v~~lp-----~C~H~FH~~CI~~W 168 (365)
.-|+- |-..+.. +.....-+ .|+|.|+..|-..|
T Consensus 26 ~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 26 VLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp CCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred EECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 34665 6554432 22333444 69999999999998
No 168
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.69 E-value=33 Score=25.17 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
....|+.|-+.+.. +.+ .- -+..||.+|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-VFV--KL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-SCE--EC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-cEE--EE-CcceeCcCcC--------eeCCCCCCCC
Confidence 34679999998875 222 22 6789999984 6899988875
No 169
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=33.63 E-value=66 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039247 44 PAVLFIIVILAVLFFISGLLHLLVRF 69 (365)
Q Consensus 44 p~iliIIvILavv~~i~~ll~llvr~ 69 (365)
..+++|+.+.+.++-.++++...+|-
T Consensus 11 ~i~lII~~vmaGiIG~IllI~y~I~r 36 (40)
T 1afo_A 11 EITLIIFGVMAGVIGTILLISYGIRR 36 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 170
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=32.13 E-value=26 Score=21.69 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhH
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCI 165 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI 165 (365)
..|+.|-...-..+++.. -|..||..|+
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~---~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNC---LDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCS---SSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEE---CCeEecccCC
Confidence 369999988877655542 5789999883
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=31.87 E-value=46 Score=24.93 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....|+.|-+.+.. ..+ .- -+..||.+| ..|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AVV--KA-RDKYRHPEC--------FVCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CCE--ES-SSCEECTTT--------CCCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cEE--EE-CCceECccC--------CEecCCCCCCCC
Confidence 34579999998885 222 22 678999988 468999888754
No 172
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=30.89 E-value=10 Score=38.64 Aligned_cols=47 Identities=23% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHh-----cCCCCCccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-----SNSTCPLCRDT 181 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~sCPlCR~~ 181 (365)
...| ||...+.++...+..-.|.--||..|+.---. ..-.||.|+..
T Consensus 37 ~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 37 PVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred CeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 3456 89877654444444556999999999953221 23469999864
No 173
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.42 E-value=32 Score=25.24 Aligned_cols=40 Identities=23% Similarity=0.457 Sum_probs=28.7
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.+++.+... -+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 55 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFY--EDRHFHEGC--------FRCCRCQRSLAD 55 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCC--SSCCCBTTT--------SBCTTTCCBCSS
T ss_pred CcCccCCCccccCcEEEEe--CCccccccC--------CeecCCCCccCC
Confidence 4799999998854444322 468899888 458899887753
No 174
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.26 E-value=20 Score=26.47 Aligned_cols=40 Identities=23% Similarity=0.507 Sum_probs=29.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
...|+.|-..+.+++.+.. -+..||.+| ..|-.|..+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a---~~~~~H~~C--------F~C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC---DGRSFHRCC--------FLCMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE---TTEEEESSS--------EECSSSCCEECS
T ss_pred CCcCcCcCccccCceeEEe---CCccccccc--------CccCCCCCCCCC
Confidence 3579999999877665443 568899888 358899888754
No 175
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=30.20 E-value=15 Score=27.40 Aligned_cols=46 Identities=24% Similarity=0.461 Sum_probs=30.2
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHh-----cCCCCCccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL-----SNSTCPLCRDT 181 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~-----~~~sCPlCR~~ 181 (365)
..| ||...+..+...+..-.|.--||..|+.---. ..-.||.|+..
T Consensus 11 ~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 11 VYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp EET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 345 88876654444444456999999999954321 23469999764
No 176
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=29.21 E-value=1.1e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=22.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 039247 39 GTRISPAVLFIIVILAVLFFISGLLHLLVRFLVKHP 74 (365)
Q Consensus 39 ~~~isp~iliIIvILavv~~i~~ll~llvr~l~rrr 74 (365)
..+-..+++|++++.+..||+++|+.-++|-.++-.
T Consensus 47 ~~~~~~ylYIL~vmgffgff~~GImLsYiRSKk~E~ 82 (138)
T 2k21_A 47 GDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEH 82 (138)
T ss_dssp TTCSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCceeehHHHHHHHHHHHHHHHHHHHhHhhhccc
Confidence 334445666666666667777777777777655533
No 177
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.64 E-value=49 Score=23.37 Aligned_cols=40 Identities=20% Similarity=0.500 Sum_probs=28.5
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccCC
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFTP 185 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~~ 185 (365)
...|+.|-+.+.. +.+.. -+..||.+|+ .|-.|+.+|...
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~CF--------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIKA---MNNSWHPECF--------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS-CCEEE---TTEEECTTTS--------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc-eEEEE---CcccccccCC--------EeCCCCCcCCCC
Confidence 4579999998874 33322 5688998883 688998887543
No 178
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.56 E-value=47 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.427 Sum_probs=29.1
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....|+.|-..+. +..+. .-+..||.+| .+|-.|+.+|..
T Consensus 14 ~~~~C~~C~~~I~-~~~v~---a~~~~~H~~C--------F~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIID-EQPLI---FKNDPYHPDH--------FNCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCC-SCCCC---CSSSCCCTTT--------SBCSSSCCBCCT
T ss_pred CCCCCccCCCEec-ceEEE---ECcceeCCCC--------CEeCCCCCccCC
Confidence 3457999999888 33332 2678899888 469999888754
No 179
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.35 E-value=15 Score=29.93 Aligned_cols=24 Identities=25% Similarity=0.631 Sum_probs=15.5
Q ss_pred CCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 155 MCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 155 ~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
+||+.|. .=+.....||.|++.-.
T Consensus 72 ~CG~~F~-----~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 72 KCGFVFK-----AEINIPSRCPKCKSEWI 95 (105)
T ss_dssp TTCCBCC-----CCSSCCSSCSSSCCCCB
T ss_pred hCcCeec-----ccCCCCCCCcCCCCCcc
Confidence 4999981 11223457999998654
No 180
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=28.19 E-value=29 Score=28.19 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=29.3
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+.|-..+.....+.. -+..||..| ..|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a---~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYA---MDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEE---TTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEe---CCcEEcccc--------cCcCcCCCccc
Confidence 3579999998876433332 578899988 56999998885
No 181
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=28.12 E-value=6.7 Score=25.56 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=10.0
Q ss_pred CCcCccccCcccCCC
Q 039247 134 PFDCAVCLCEFSEKD 148 (365)
Q Consensus 134 ~~~CaICl~~f~~~~ 148 (365)
.+.|++|+..|...+
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 467888887776533
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.06 E-value=53 Score=23.14 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=27.8
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+.|-..+.. +.+ .. -+..||.+| ..|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~--~a-~~~~~H~~C--------F~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GGV--TY-REQPWHKEC--------FVCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SEE--ES-SSSEEETTT--------SBCSSSCCBCT
T ss_pred CCCCcccCCeecc-ceE--EE-CccccCCCC--------CccCCCCCcCC
Confidence 3479999998875 333 22 678999888 46889988874
No 183
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.04 E-value=28 Score=25.83 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=27.0
Q ss_pred CCCcCccccCcccCCCceeecCCCC---CccchhhHHHHHh--cCCCCCcccccc
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCS---HAFHINCIDTWLL--SNSTCPLCRDTL 182 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~---H~FH~~CI~~Wl~--~~~sCPlCR~~l 182 (365)
+...| ||.... .++ ++....|. .-||..|+.---. ..-.||.|+...
T Consensus 5 ~~~yC-~C~~~~-~g~-MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 5 SSGYC-ICNQVS-YGE-MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCCCS-TTSCCC-CSS-EECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHH
T ss_pred CCeEE-EcCCCC-CCC-EeEeCCCCCCccCCcccccccCcCCCCCEECCCCCccc
Confidence 34456 587652 333 33333453 7899999973111 123599997654
No 184
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=27.22 E-value=12 Score=26.06 Aligned_cols=43 Identities=23% Similarity=0.577 Sum_probs=26.5
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHh---cCCCCCcccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLL---SNSTCPLCRD 180 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~---~~~sCPlCR~ 180 (365)
.| ||......+..+ .-..|..-||..|+.--.. ..-.||.|+.
T Consensus 6 ~C-~C~~~~~~~~MI-~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 6 TC-FCMKPFAGRPMI-ECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CS-TTCCBCTTCCEE-ECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EE-EeCCcCCCCCEE-EcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 34 676654432334 4445999999999864321 2346888865
No 185
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=26.98 E-value=61 Score=24.58 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=25.9
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+.|-..+..+..+... -+..||..| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~ 44 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHY--KNRFWHDTC--------FRCAKCLHPLA 44 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEE--TTEEEETTT--------CCCSSSCCCTT
T ss_pred CCcCcccCCcccCCceEEEE--CccChhhcC--------CcccccCCCCC
Confidence 34688888888753333222 457788777 45778877773
No 186
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.91 E-value=40 Score=24.32 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=28.6
Q ss_pred CcCccccCcccC---CCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSE---KDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~---~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.+ +..+... -+..||..| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~C--------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAY--EGQSWHDYC--------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEE--TTEEEETTT--------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEE--CcceeCccc--------CEehhcCCCCCC
Confidence 579999999885 3333322 467899888 468999888753
No 187
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.78 E-value=30 Score=29.68 Aligned_cols=47 Identities=21% Similarity=0.373 Sum_probs=30.1
Q ss_pred CCCcCccccCcccC--CCceeecCCCCCccchhhHHHHHhcCC--CCCccccc
Q 039247 133 EPFDCAVCLCEFSE--KDKLRLLPMCSHAFHINCIDTWLLSNS--TCPLCRDT 181 (365)
Q Consensus 133 ~~~~CaICl~~f~~--~~~v~~lp~C~H~FH~~CI~~Wl~~~~--sCPlCR~~ 181 (365)
+...|++|...|.- +-. .+...|.|.+|..|= .|+.... .|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCLECSLFVCKSCS-HAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECTTTCCEECGGGE-ECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCC-CcCCCCCchhhcccc-cccCCCCcEeeHHHHHH
Confidence 45789999998653 223 344459999999996 2443322 27777653
No 188
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=26.65 E-value=40 Score=23.55 Aligned_cols=38 Identities=13% Similarity=0.377 Sum_probs=27.8
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+. ++.+ .. -+..||..| ..|-.|+.+|..
T Consensus 6 ~~C~~C~~~I~-~~~~--~a-~~~~~H~~C--------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIE-GRVV--NA-MGKQWHVEH--------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECC-SCEE--CC-TTSBEETTT--------CBCTTTCCBCSS
T ss_pred CCCcccCCEec-ceEE--EE-CccccccCc--------CEECCCCCCCCC
Confidence 47999999887 3332 22 578999888 468899888753
No 189
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=26.08 E-value=73 Score=21.81 Aligned_cols=11 Identities=0% Similarity=0.141 Sum_probs=6.5
Q ss_pred CCchHHHHHHH
Q 039247 41 RISPAVLFIIV 51 (365)
Q Consensus 41 ~isp~iliIIv 51 (365)
....+...++.
T Consensus 10 ~~~~Ia~~vVG 20 (44)
T 2jwa_A 10 PLTSIISAVVG 20 (44)
T ss_dssp SHHHHHHHHHH
T ss_pred cccchHHHHHH
Confidence 45566666665
No 190
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.13 E-value=71 Score=23.02 Aligned_cols=37 Identities=19% Similarity=0.451 Sum_probs=27.3
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..|+-|-..+.. ..+ ..-+..||.+| ..|-.|..+|.
T Consensus 6 ~~C~~C~~~I~~-~~v---~a~~~~wH~~C--------F~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG-RVL---EAGEKHYHPSC--------ALCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS-CCB---CCSSCCBCTTT--------SCCSSSCCCCC
T ss_pred CCcccCCCEecC-eeE---EeCCCCCCCCc--------CEeCCCCCCCC
Confidence 469999988775 222 23678999888 46889988875
No 191
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.42 E-value=50 Score=24.75 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 133 EPFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 133 ~~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
....|+.|-..+. ++.+. . -+..||.+| ..|-.|+.+|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~C--------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLV--A-LGKSWHPEE--------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEE--E-TTEEECTTT--------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEEE--E-CCccccccC--------CccCCCCCCCCC
Confidence 3457999999885 33332 2 678999888 468999888864
No 192
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.03 E-value=84 Score=23.91 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=11.1
Q ss_pred CCchHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 039247 41 RISPAVLFIIVI-LAVLFFISGLLHLLVRF 69 (365)
Q Consensus 41 ~isp~iliIIvI-Lavv~~i~~ll~llvr~ 69 (365)
++-.+++.+++. +++.++++++..+++.+
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333332 33333333334444433
No 193
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.96 E-value=54 Score=28.44 Aligned_cols=45 Identities=18% Similarity=0.495 Sum_probs=31.2
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCCccchhhHHHHHhc----------CCCCCcccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLP--MCSHAFHINCIDTWLLS----------NSTCPLCRD 180 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp--~C~H~FH~~CI~~Wl~~----------~~sCPlCR~ 180 (365)
..+..|.||-+. ..+.... .|...||..||+.++-. .=.|=+|.-
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 345679999764 3454444 59999999999998743 124888854
No 194
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.52 E-value=20 Score=26.83 Aligned_cols=19 Identities=42% Similarity=0.831 Sum_probs=14.2
Q ss_pred HHHHHhcCCCCCccccccc
Q 039247 165 IDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 165 I~~Wl~~~~sCPlCR~~l~ 183 (365)
++.||..--.||.|+.+|.
T Consensus 1 md~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 1 MDTKLLDILACPICKGPLK 19 (69)
T ss_dssp --CCGGGTCCCTTTCCCCE
T ss_pred CChHHHhheeCCCCCCcCe
Confidence 3567777889999998875
No 195
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.35 E-value=44 Score=24.38 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=27.0
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
..|+.|-+.+. +..+. . -+..||.+| ..|-.|..+|.
T Consensus 16 ~~C~~C~~~I~-~~~~~--a-~~~~~H~~C--------F~C~~C~~~L~ 52 (81)
T 1x6a_A 16 EFCHGCSLLMT-GPFMV--A-GEFKYHPEC--------FACMSCKVIIE 52 (81)
T ss_dssp CBCTTTCCBCC-SCCBC--C-TTCCBCTTS--------CBCTTTCCBCC
T ss_pred CcCccCCCCcC-ceEEE--E-CCceecccc--------CCccCCCCccC
Confidence 46999999888 33222 2 578899888 46889988874
No 196
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.54 E-value=49 Score=24.70 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039247 48 FIIVILAVLFFISGLLHLLVR 68 (365)
Q Consensus 48 iIIvILavv~~i~~ll~llvr 68 (365)
+.-+|+++++|+++++.++-.
T Consensus 19 igGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred ecchhhHHHHHHHHHHHHHcC
Confidence 444566666677777666644
No 197
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.49 E-value=54 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.461 Sum_probs=27.5
Q ss_pred CcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccccC
Q 039247 135 FDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 135 ~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
..|+.|-..+.. +.+.. -+..||.+| ..|-.|..+|..
T Consensus 16 ~~C~~C~~~I~~-~~v~a---~~~~wH~~C--------F~C~~C~~~L~~ 53 (81)
T 1v6g_A 16 TRCFSCDQFIEG-EVVSA---LGKTYHPDC--------FVCAVCRLPFPP 53 (81)
T ss_dssp CBCTTTCCBCCS-CCEEE---TTEEECTTT--------SSCSSSCCCCCS
T ss_pred CcCccccCEecc-ceEEE---CCceeCccC--------CccccCCCCCCC
Confidence 479999998873 33332 578899888 468889887753
No 198
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=22.48 E-value=33 Score=29.08 Aligned_cols=9 Identities=33% Similarity=1.110 Sum_probs=4.2
Q ss_pred CCCcccccc
Q 039247 174 TCPLCRDTL 182 (365)
Q Consensus 174 sCPlCR~~l 182 (365)
.|-.|...|
T Consensus 95 ~C~~C~~~L 103 (169)
T 2rgt_A 95 ACVVCKRQL 103 (169)
T ss_dssp BCTTTCCBC
T ss_pred cCCCCCCCC
Confidence 445554444
No 199
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=22.39 E-value=39 Score=29.16 Aligned_cols=37 Identities=24% Similarity=0.668 Sum_probs=19.8
Q ss_pred cCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCcccccc
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTL 182 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l 182 (365)
.|+.|-..+...+.+... -++.||..| ..|-.|...|
T Consensus 71 ~C~~C~~~I~~~e~~i~a--~~~~~H~~C--------F~C~~C~~~L 107 (188)
T 1rut_X 71 ACSACGQSIPASELVMRA--QGNVYHLKC--------FTCSTCRNRL 107 (188)
T ss_dssp ECTTTCCEECTTSEEEEE--TTEEECGGG--------CBCTTTCCBC
T ss_pred ccccCCCccccCcEEEEc--CCCEEeCCC--------CeECCCCCCC
Confidence 466666665544333221 456666666 3566666555
No 200
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=22.32 E-value=48 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.439 Sum_probs=28.4
Q ss_pred cCccccCcccCCCceeecCCCCCccc--hhhHHHHHhcCCCCCcccccccC
Q 039247 136 DCAVCLCEFSEKDKLRLLPMCSHAFH--INCIDTWLLSNSTCPLCRDTLFT 184 (365)
Q Consensus 136 ~CaICl~~f~~~~~v~~lp~C~H~FH--~~CI~~Wl~~~~sCPlCR~~l~~ 184 (365)
.|+.|-..+.+++..... -+..|| .+| .+|-.|+.+|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a--~~~~wH~~~~C--------F~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTY--NNFSWHASTEC--------FLCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEE--TTEEEETTTTT--------SBCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEE--CCCccCCCCCC--------EECCCCCCcCCC
Confidence 599999998874333222 578899 888 468899888753
No 201
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=22.12 E-value=18 Score=32.39 Aligned_cols=25 Identities=28% Similarity=0.669 Sum_probs=15.7
Q ss_pred eeecCCCCCccchhhHHHHHhcCCCCCccccc
Q 039247 150 LRLLPMCSHAFHINCIDTWLLSNSTCPLCRDT 181 (365)
Q Consensus 150 v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~ 181 (365)
..+.+.|||++-- ..+ ..||+|..+
T Consensus 171 ~~~C~~CG~i~~g--~~p-----~~CP~C~~~ 195 (202)
T 1yuz_A 171 FHLCPICGYIHKG--EDF-----EKCPICFRP 195 (202)
T ss_dssp EEECSSSCCEEES--SCC-----SBCTTTCCB
T ss_pred EEEECCCCCEEcC--cCC-----CCCCCCCCC
Confidence 4455668988542 222 379999764
No 202
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=21.90 E-value=1.1e+02 Score=17.95 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039247 54 AVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 54 avv~~i~~ll~llvr~l~r 72 (365)
++..-+++++|++.+++-|
T Consensus 3 v~aa~iigIlHLiLwIlDr 21 (23)
T 3lbw_A 3 VVAASIIAILHLILWILDR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHhh
Confidence 3445667788888777644
No 203
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=21.87 E-value=67 Score=24.23 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039247 48 FIIVILAVLFFISGLLHLLVRF 69 (365)
Q Consensus 48 iIIvILavv~~i~~ll~llvr~ 69 (365)
+.-+|+++++|+++++.++-.-
T Consensus 18 iGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 18 IGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHcCc
Confidence 3445566666666766666543
No 204
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=21.09 E-value=13 Score=29.80 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=25.2
Q ss_pred CccccCcccCCCceeecCCCCCccchhhHHHHHhc--------CCCCCcccc
Q 039247 137 CAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLS--------NSTCPLCRD 180 (365)
Q Consensus 137 CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~--------~~sCPlCR~ 180 (365)
|..|......++.+.....|...||..|+..-... .-.||.|+.
T Consensus 62 c~~c~~~~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 62 VDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp BCCHHHHCCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ccccccccccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34444333333445555669999999997643211 124888865
No 205
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=66 Score=22.60 Aligned_cols=38 Identities=18% Similarity=0.517 Sum_probs=27.5
Q ss_pred CCcCccccCcccCCCceeecCCCCCccchhhHHHHHhcCCCCCccccccc
Q 039247 134 PFDCAVCLCEFSEKDKLRLLPMCSHAFHINCIDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 134 ~~~CaICl~~f~~~~~v~~lp~C~H~FH~~CI~~Wl~~~~sCPlCR~~l~ 183 (365)
...|+.|-..+.. +.+.. -+..||.+| ..|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~a---~~~~~H~~C--------F~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGITY---QDQPWHADC--------FVCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEEE---TTEEECTTT--------TBCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEEE---CccccccCc--------CEECCCCCCCC
Confidence 3479999998864 33332 568899888 36889988875
No 206
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=20.76 E-value=59 Score=32.09 Aligned_cols=46 Identities=22% Similarity=0.551 Sum_probs=32.4
Q ss_pred CCCCcCccccCcccCCCceeecC--CCCCccchhhHHHHHhc----------CCCCCccccc
Q 039247 132 KEPFDCAVCLCEFSEKDKLRLLP--MCSHAFHINCIDTWLLS----------NSTCPLCRDT 181 (365)
Q Consensus 132 ~~~~~CaICl~~f~~~~~v~~lp--~C~H~FH~~CI~~Wl~~----------~~sCPlCR~~ 181 (365)
..+..|.+|-+. + .+.... .|...||..||+..+-. .=.|=+|...
T Consensus 91 G~~~yCr~C~~G---g-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSG---E-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCC---S-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCC---C-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345679999864 2 344544 69999999999999832 2358888653
No 207
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=20.61 E-value=19 Score=26.78 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=15.2
Q ss_pred HHHHHhcCCCCCccccccc
Q 039247 165 IDTWLLSNSTCPLCRDTLF 183 (365)
Q Consensus 165 I~~Wl~~~~sCPlCR~~l~ 183 (365)
++.||..--.||.|+.+|.
T Consensus 3 md~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 3 LDPQLLEVLACPKDKGPLR 21 (67)
T ss_dssp SCGGGTCCCBCTTTCCBCE
T ss_pred CCHHHHHHhCCCCCCCcCe
Confidence 3567778889999999874
No 208
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=20.56 E-value=1.5e+02 Score=18.33 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 039247 49 IIVILAVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 49 IIvILavv~~i~~ll~llvr~l~r 72 (365)
+|.-++.++.+..+-+++.+++.+
T Consensus 8 viaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444555667776654
No 209
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=20.20 E-value=59 Score=25.47 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039247 38 SGTRISPAVLFIIVILAVLFFISGLLHLLVRFL 70 (365)
Q Consensus 38 s~~~isp~iliIIvILavv~~i~~ll~llvr~l 70 (365)
.+-+++|.+++++.++++++ +++||++.++.
T Consensus 55 ~GlKV~P~~VLv~sl~FIa~--VilLHI~gK~~ 85 (87)
T 2ww9_C 55 NGFRVDSLVVLFLSVGFIFS--VIALHLLTKFT 85 (87)
T ss_dssp ---CCCHHHHHHHHHHHHHH--HHHC-------
T ss_pred CceEEcCeeehhhHHHHHHH--HHHHHHhhhhc
Confidence 35688998888777766644 44577777654
No 210
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=20.05 E-value=1.2e+02 Score=18.23 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039247 54 AVLFFISGLLHLLVRFLVK 72 (365)
Q Consensus 54 avv~~i~~ll~llvr~l~r 72 (365)
++..-+++++|++.+++-|
T Consensus 6 v~aa~iiGilHLiLwIldr 24 (26)
T 3bkd_A 6 VVAASIMGILHLILWILDR 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhh
Confidence 3444566777777776644
Done!