BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039248
(400 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VRX|A Chain A, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
pdb|1VRX|B Chain B, Endocellulase E1 From Acidothermus Cellulolyticus Mutant
Y245g
Length = 358
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 33/215 (15%)
Query: 34 WMKGLSFVADRFKEKRQVVAISLRNELRGPRQ---NEP--DWYKYISEGARVVHKRNPHV 88
W+ L +A R+K VV L NE P +P DW V NP++
Sbjct: 137 WISDLQALAQRYKGNPTVVGFDLHNEPHDPACWGCGDPSIDWRLAAERAGNAVLSVNPNL 196
Query: 89 LVFVSGLN--------FDLDLRFLQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNI 140
L+FV G+ + +L+ + P+ L++ N+LVY H Y+ S W + PT
Sbjct: 197 LIFVEGVQSYNGDSYWWGGNLQGAGQYPVVLNVPNRLVYSAHDYATSVGPQTWFSDPT-- 254
Query: 141 VCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQREVNLADNLYMTCLMAYAAET----- 195
N+ +N AP+ L EFG + D ++ L+ Y T
Sbjct: 255 -FPNNMPGIWNKNWGYLFNQNIAPVWLGEFGTTLQST--TDQTWLKTLVQYLRPTAQYGA 311
Query: 196 -DLDWALWALQGSYYLRGGLKGAEETFGALDSTWQ 229
W W+ + +T G L WQ
Sbjct: 312 DSFQWTFWSWN---------PDSGDTGGILKDDWQ 337
>pdb|1ECE|A Chain A, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
pdb|1ECE|B Chain B, Acidothermus Cellulolyticus Endocellulase E1 Catalytic
Domain In Complex With A Cellotetraose
Length = 358
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 93/247 (37%), Gaps = 39/247 (15%)
Query: 2 VLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELR 61
++LD H +PD CS + + W+ L +A R+K VV L NE
Sbjct: 111 IILDRH--RPD--CSGQ--SALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPH 164
Query: 62 GPRQ---NEP--DWYKYISEGARVVHKRNPHVLVFVSGLN--------FDLDLRFLQKSP 108
P +P DW V NP++L+FV G+ + +L+ + P
Sbjct: 165 DPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYP 224
Query: 109 LALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLS 168
+ L++ N+LVY H Y+ S W + PT N+ +N AP+ L
Sbjct: 225 VVLNVPNRLVYSAHDYATSVYPQTWFSDPT---FPNNMPGIWNKNWGYLFNQNIAPVWLG 281
Query: 169 EFGFDQREVNLADNLYMTCLMAYAAET------DLDWALWALQGSYYLRGGLKGAEETFG 222
EFG + D ++ L+ Y T W W+ + +T G
Sbjct: 282 EFGTTLQST--TDQTWLKTLVQYLRPTAQYGADSFQWTFWSWN---------PDSGDTGG 330
Query: 223 ALDSTWQ 229
L WQ
Sbjct: 331 ILKDDWQ 337
>pdb|1CEC|A Chain A, A Common Protein Fold And Similar Active Site In Two
Distinct Families Of Beta-Glycanases
Length = 343
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 30 DPNEWMKGLS---FVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNP 86
DPN+ + + F+A R+ +R+ +A L NE+ P + W K + E + + + +
Sbjct: 108 DPNQQKRFVDIWRFLAKRYINEREHIAFELLNEVVEP--DSTRWNKLMLECIKAIREIDS 165
Query: 87 HVLVFVSGLNFDLDLRFLQKSP-----LALDLDNKLVYEIHWYS---FSQDQNMW 133
+ +++ G N++ SP LA D+ +VY H+Y+ F+ + W
Sbjct: 166 TMWLYIGGNNYN--------SPDELKNLADIDDDYIVYNFHFYNPFFFTHQKAHW 212
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 272 ANARNELYASNRGP---FSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLSNDCQSNQSA 328
A A+++L GP + W+ G TP L R LC+ D LPP ND + A
Sbjct: 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCV----DRLPPGF-NDVDALCRA 205
Query: 329 WSLVSS 334
S V S
Sbjct: 206 LSAVHS 211
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 272 ANARNELYASNRGP---FSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLSNDCQSNQSA 328
A A+++L GP + W+ G TP L R LC+ D LPP ND + A
Sbjct: 151 ARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCV----DRLPPGF-NDVDALCRA 205
Query: 329 WSLVSS 334
S V S
Sbjct: 206 LSAVHS 211
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 272 ANARNELYASNRGP---FSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLSNDCQSNQSA 328
A A+++L GP + W+ G TP L R LC+ D LPP ND + A
Sbjct: 149 ARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCV----DRLPPGF-NDVDALCRA 203
Query: 329 WSLVSS 334
S V S
Sbjct: 204 LSAVHS 209
>pdb|2NOT|A Chain A, Notechis Ii-5, Neurotoxic Phospholipase A2 From Notechis
Scutatus Scutatus
pdb|2NOT|B Chain B, Notechis Ii-5, Neurotoxic Phospholipase A2 From Notechis
Scutatus Scutatus
Length = 119
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 258 SYIIFHPLSGNCVNANARNELYASNRGPFSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPM 317
SY+I C N R + + G + W GG GTP+ +DR C K+ D
Sbjct: 6 SYLI------QCANHGRRPTRHYMDYGCYCGW--GGSGTPVDELDR--CCKIHDDCYSDA 55
Query: 318 LSNDCQSNQSAW 329
C SA+
Sbjct: 56 EKKGCSPKMSAY 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,613,273
Number of Sequences: 62578
Number of extensions: 518940
Number of successful extensions: 981
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 14
length of query: 400
length of database: 14,973,337
effective HSP length: 101
effective length of query: 299
effective length of database: 8,652,959
effective search space: 2587234741
effective search space used: 2587234741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)