BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039248
(400 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23548|GUN_PAEPO Endoglucanase OS=Paenibacillus polymyxa PE=3 SV=2
Length = 397
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 33/219 (15%)
Query: 34 WMKGLSFVADRFKEKRQVVAISLRNELRG-----PRQNEPDWYKYISEGARVVHKRNPHV 88
W+ +ADR+K V+ L NE G DW + NP+
Sbjct: 169 WISDWKMLADRYKNNPTVIGADLHNEPHGQASWGTGNASTDWRLAAQRAGNAILSVNPNW 228
Query: 89 LVFVSGLNFDL-----------DLRFLQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQP 137
L+ V G++ ++ +L + P+ LD+ N++VY H Y W P
Sbjct: 229 LILVEGVDHNVQGNNSQYWWGGNLTGVANYPVVLDVPNRVVYSPHDYGPGVSSQPWFNDP 288
Query: 138 ---TNI-VCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQREVNLADNLYMTCLMAYAA 193
+N+ + T +I +++N AP+++ EFG +++ + + L+ Y
Sbjct: 289 AFPSNLPAIWDQTWGYI-------SKQNIAPVLVGEFGGRNVDLSCPEGKWQNALVHYIG 341
Query: 194 ETDLDWALWALQGSYYLRGGLKGAEETFGALDSTWQHPR 232
+L + W+L + GGL + T TW P+
Sbjct: 342 ANNLYFTYWSLNPNSGDTGGLLLDDWT------TWNRPK 374
>sp|P54583|GUN1_ACIC1 Endoglucanase E1 OS=Acidothermus cellulolyticus (strain ATCC 43068
/ 11B) GN=Acel_0614 PE=1 SV=1
Length = 562
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 89/232 (38%), Gaps = 30/232 (12%)
Query: 2 VLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELR 61
++LD H +PD CS + + W+ L +A R+K VV L NE
Sbjct: 152 IILDRH--RPD--CSGQ--SALWYTSSVSEATWISDLQALAQRYKGNPTVVGFDLHNEPH 205
Query: 62 GPRQ---NEP--DWYKYISEGARVVHKRNPHVLVFVSGLN--------FDLDLRFLQKSP 108
P +P DW V NP++L+FV G+ + +L+ + P
Sbjct: 206 DPACWGCGDPSIDWRLAAERAGNAVLSVNPNLLIFVEGVQSYNGDSYWWGGNLQGAGQYP 265
Query: 109 LALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLS 168
+ L++ N+LVY H Y+ S W + PT N+ +N AP+ L
Sbjct: 266 VVLNVPNRLVYSAHDYATSVYPQTWFSDPT---FPNNMPGIWNKNWGYLFNQNIAPVWLG 322
Query: 169 EFGFDQREVNLADNLYMTCLMAYAAET------DLDWALWALQGSYYLRGGL 214
EFG + D ++ L+ Y T W W+ GG+
Sbjct: 323 EFGTTLQST--TDQTWLKTLVQYLRPTAQYGADSFQWTFWSWNPDSGDTGGI 372
>sp|P10474|GUNB_CALSA Endoglucanase/exoglucanase B OS=Caldocellum saccharolyticum GN=celB
PE=3 SV=1
Length = 1039
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 97/235 (41%), Gaps = 50/235 (21%)
Query: 26 DRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRG-PRQNE--PDW--------YKYI 74
D F P ++ K ++ +R+K ++A L+NE G P Q+ W +KY
Sbjct: 759 DEKFTPEDFYKACEWITNRYKNDDTIIAFDLKNEPHGKPWQDTTFAKWDNSTDINNWKYA 818
Query: 75 SEG-ARVVHKRNPHVLVFVSGLN---------------------FDLDLRFLQKSPLAL- 111
+E A+ + NP++L+ + G+ + +LR ++K P+ L
Sbjct: 819 AETCAKRILNINPNLLIVIEGIEAYPKDDVTWTSKSSSDYYSTWWGGNLRGVRKYPINLG 878
Query: 112 DLDNKLVYEIHWYSFSQDQNMW-----KTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLV 166
NK+VY H Y S Q W + C++ ++I +N APL+
Sbjct: 879 KYQNKVVYSPHDYGPSVYQQPWFYPGFTKESLLQDCWRPNWAYI-------MEENIAPLL 931
Query: 167 LSEFGFDQREVNLADN-LYMTCLMAYAAETDLDWALWALQGSYYLRGGLKGAEET 220
+ E+G ++ ADN +M L Y E + W + GGL G + T
Sbjct: 932 IGEWG---GHLDGADNEKWMKYLRDYIIENHIHHTFWCFNANSGDTGGLVGYDFT 983
>sp|P19487|GUNA_XANCP Major extracellular endoglucanase OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=engXCA PE=1 SV=2
Length = 484
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 2 VLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELR 61
VLLD+H PD C+ + G + +W+ L FVA+R+K V+ + L+NE
Sbjct: 131 VLLDHH--TPD--CAGISELWYTGS--YTEAQWLADLRFVANRYKNVPYVLGLDLKNEPH 184
Query: 62 GPR-----QNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95
G DW K G+ V P L+ V G+
Sbjct: 185 GAATWGTGNAATDWNKAAERGSAAVLAVAPKWLIAVEGI 223
>sp|Q05332|GUNG_CLOTH Endoglucanase G OS=Clostridium thermocellum (strain ATCC 27405 /
DSM 1237) GN=celG PE=3 SV=1
Length = 566
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 18/79 (22%)
Query: 34 WMKGLSFVADRFKEKRQVVAISLRNELRGPR----------------QNEPDWYKYISEG 77
W+ L ++AD++K ++A L+NE G R +E +W KY +E
Sbjct: 201 WIDTLVWLADKYKNDDTIIAFDLKNEPHGKRGYTAEVPKLLAKWDNSTDENNW-KYAAET 259
Query: 78 -ARVVHKRNPHVLVFVSGL 95
A+ + + NP VL+ + G+
Sbjct: 260 CAKAILEVNPKVLIVIEGV 278
>sp|A0LK15|SYL_SYNFM Leucine--tRNA ligase OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=leuS PE=3 SV=1
Length = 829
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 180 ADNLYMTCLMAYAAETDLDWALWALQGSY-YLRGGLKGAEETFGALDSTWQHPRNPNFLE 238
AD + + CL A E DL+W+ ++GS+ +L + + AL S +H E
Sbjct: 604 ADTVRLFCLFASPPEKDLEWSDQGVEGSFRFLSRIWRLVSDNLDALRSAPRHNGGGALPE 663
Query: 239 RLRFLQTKTHVPTTSRTRTSYIIFHPLSGNCVNANARNELYASNRG 284
L L KTH T FH + N++Y G
Sbjct: 664 PLEALHRKTHQTIKKVTEDIRDRFHFNTAIAAIMELVNQIYQVVEG 709
>sp|B8DJF0|SYL_DESVM Leucine--tRNA ligase OS=Desulfovibrio vulgaris (strain Miyazaki F /
DSM 19637) GN=leuS PE=3 SV=1
Length = 834
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 180 ADNLYMTCLMAYAAETDLDWALWALQGSYYLRGGL-KGAEETFGAL 224
AD + + CL A E D DW+ ++GSY G + + AEE G L
Sbjct: 606 ADTVRLFCLFAAPPERDFDWSDSGIEGSYRFIGRIWRLAEELSGVL 651
>sp|O66415|YZ24_AQUAE Uncharacterized protein aq_aa24 OS=Aquifex aeolicus (strain VF5)
GN=aq_aa24 PE=4 SV=1
Length = 121
Score = 32.3 bits (72), Expect = 7.0, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 36 KGLSFVADR---FKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFV 92
KG FV D+ +++ + + +E G R W+K+I + + HKR PH +
Sbjct: 33 KGYVFVTDKGPWYRKACRELNCGWIHETFGGRNVVERWFKHIKQRMKGFHKRFPHNAKYE 92
Query: 93 S-GLNFDLDLRFLQKSPLALDL 113
+ GL+ L +PL L+L
Sbjct: 93 TVGLDLPLLFSLDHSTPLTLNL 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,266,308
Number of Sequences: 539616
Number of extensions: 6436811
Number of successful extensions: 11119
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 11111
Number of HSP's gapped (non-prelim): 15
length of query: 400
length of database: 191,569,459
effective HSP length: 120
effective length of query: 280
effective length of database: 126,815,539
effective search space: 35508350920
effective search space used: 35508350920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)