Query 039248
Match_columns 400
No_of_seqs 235 out of 1099
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:46:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00150 Cellulase: Cellulase 99.9 3.7E-26 8E-31 219.2 16.0 195 1-206 77-279 (281)
2 COG2730 BglC Endoglucanase [Ca 99.6 1.7E-15 3.8E-20 155.4 12.4 173 1-175 131-326 (407)
3 smart00458 RICIN Ricin-type be 98.5 2.3E-07 5.1E-12 77.2 7.1 87 264-360 4-97 (117)
4 smart00633 Glyco_10 Glycosyl h 98.3 3E-05 6.5E-10 74.8 17.3 152 31-205 56-227 (254)
5 cd00161 RICIN Ricin-type beta- 98.2 6.2E-06 1.3E-10 68.2 8.4 85 266-358 9-102 (124)
6 PRK10150 beta-D-glucuronidase; 98.1 0.00014 3E-09 78.7 18.8 177 31-228 389-579 (604)
7 PF12876 Cellulase-like: Sugar 98.1 6.2E-06 1.3E-10 66.9 6.4 78 41-124 1-88 (88)
8 PF02836 Glyco_hydro_2_C: Glyc 97.8 0.00027 5.9E-09 69.5 13.0 57 31-95 103-159 (298)
9 PF00652 Ricin_B_lectin: Ricin 97.7 3.9E-05 8.4E-10 64.1 4.8 84 266-357 11-104 (124)
10 PF07745 Glyco_hydro_53: Glyco 97.7 0.00039 8.4E-09 69.9 11.7 142 41-203 115-295 (332)
11 smart00458 RICIN Ricin-type be 97.3 0.00042 9.1E-09 57.4 5.6 66 266-332 45-117 (117)
12 PF11790 Glyco_hydro_cc: Glyco 97.2 0.0083 1.8E-07 57.5 14.3 136 37-196 55-202 (239)
13 PF00652 Ricin_B_lectin: Ricin 97.0 0.0012 2.6E-08 55.0 5.5 69 259-329 47-124 (124)
14 PF00331 Glyco_hydro_10: Glyco 96.9 0.012 2.6E-07 58.9 12.0 151 32-206 106-287 (320)
15 cd00161 RICIN Ricin-type beta- 96.8 0.0025 5.4E-08 52.4 5.2 65 266-331 51-124 (124)
16 COG3934 Endo-beta-mannanase [C 96.7 0.011 2.3E-07 61.5 10.3 199 2-228 86-306 (587)
17 PF01229 Glyco_hydro_39: Glyco 96.5 0.013 2.7E-07 62.0 9.9 204 29-245 129-361 (486)
18 PF02449 Glyco_hydro_42: Beta- 96.3 0.12 2.5E-06 52.7 14.8 31 32-62 110-140 (374)
19 COG3867 Arabinogalactan endo-1 96.1 0.17 3.6E-06 50.1 14.0 144 40-204 160-342 (403)
20 PF14200 RicinB_lectin_2: Rici 95.9 0.014 3E-07 48.3 4.9 75 258-332 16-105 (105)
21 PRK10340 ebgA cryptic beta-D-g 95.2 0.18 4E-06 58.0 12.2 55 32-94 422-476 (1021)
22 PRK09525 lacZ beta-D-galactosi 95.1 0.17 3.7E-06 58.3 11.8 56 32-95 435-490 (1027)
23 PF14200 RicinB_lectin_2: Rici 94.5 0.065 1.4E-06 44.2 4.9 69 286-359 2-81 (105)
24 PF03198 Glyco_hydro_72: Gluca 93.6 1.1 2.5E-05 44.6 12.4 84 1-92 94-179 (314)
25 PF14587 Glyco_hydr_30_2: O-Gl 91.8 6.4 0.00014 40.5 15.2 69 29-97 151-230 (384)
26 KOG3738 Predicted polypeptide 90.8 0.078 1.7E-06 54.2 0.3 103 266-379 440-552 (559)
27 PF13204 DUF4038: Protein of u 89.1 1.3 2.9E-05 43.6 7.4 63 27-94 124-186 (289)
28 TIGR03356 BGL beta-galactosida 88.2 1.9 4.1E-05 45.0 8.2 81 2-89 110-211 (427)
29 KOG3736 Polypeptide N-acetylga 86.1 1.1 2.4E-05 48.4 5.1 65 268-333 507-574 (578)
30 COG3693 XynA Beta-1,4-xylanase 82.7 4.5 9.7E-05 40.7 7.3 60 32-93 125-192 (345)
31 KOG3736 Polypeptide N-acetylga 80.8 2.2 4.8E-05 46.1 4.8 85 264-361 461-555 (578)
32 COG5309 Exo-beta-1,3-glucanase 78.4 26 0.00057 34.5 10.8 145 40-200 120-277 (305)
33 PF03662 Glyco_hydro_79n: Glyc 76.5 1.6 3.4E-05 44.0 2.0 28 161-188 284-312 (319)
34 COG5520 O-Glycosyl hydrolase [ 75.5 57 0.0012 33.5 12.5 165 32-227 149-326 (433)
35 PF02156 Glyco_hydro_26: Glyco 73.5 59 0.0013 32.6 12.3 139 38-206 42-205 (311)
36 KOG2233 Alpha-N-acetylglucosam 71.4 10 0.00022 40.2 6.4 64 35-98 223-286 (666)
37 PF12891 Glyco_hydro_44: Glyco 65.9 20 0.00043 34.6 6.8 63 32-98 107-182 (239)
38 PF02055 Glyco_hydro_30: O-Gly 63.9 83 0.0018 33.7 11.7 149 32-204 204-379 (496)
39 PF05089 NAGLU: Alpha-N-acetyl 62.3 22 0.00048 36.0 6.6 59 35-94 160-218 (333)
40 COG2240 PdxK Pyridoxal/pyridox 61.9 46 0.001 32.9 8.6 79 2-100 37-117 (281)
41 cd02068 radical_SAM_B12_BD B12 60.4 28 0.00061 29.4 6.2 41 47-97 38-78 (127)
42 PF02310 B12-binding: B12 bind 57.6 36 0.00077 28.1 6.3 43 46-97 49-91 (121)
43 KOG3738 Predicted polypeptide 48.1 18 0.0004 37.5 3.4 70 264-333 480-555 (559)
44 cd02067 B12-binding B12 bindin 42.7 50 0.0011 27.4 4.9 56 29-99 37-93 (119)
45 PRK10673 acyl-CoA esterase; Pr 38.8 1.2E+02 0.0026 27.8 7.2 63 37-102 31-95 (255)
46 PF12697 Abhydrolase_6: Alpha/ 37.4 1.1E+02 0.0025 26.3 6.6 61 38-99 14-77 (228)
47 PF06838 Met_gamma_lyase: Meth 34.6 71 0.0015 33.0 5.2 55 38-95 144-198 (403)
48 PF00232 Glyco_hydro_1: Glycos 34.5 41 0.00088 35.3 3.7 61 30-92 139-219 (455)
49 PRK00865 glutamate racemase; P 30.5 2E+02 0.0044 27.7 7.6 57 37-94 20-76 (261)
50 KOG3737 Predicted polypeptide 29.7 31 0.00067 35.8 1.7 92 261-364 484-583 (603)
51 PRK09852 cryptic 6-phospho-bet 28.7 1.4E+02 0.0031 31.6 6.6 69 160-230 363-445 (474)
52 TIGR01233 lacG 6-phospho-beta- 27.1 1.6E+02 0.0035 31.2 6.6 37 21-62 126-162 (467)
53 COG5111 RPC34 DNA-directed RNA 27.1 95 0.0021 30.0 4.3 64 18-85 156-222 (301)
54 cd07366 3MGA_Dioxygenase Subun 27.0 80 0.0017 32.0 4.1 28 68-95 69-96 (328)
55 PF02312 CBF_beta: Core bindin 26.7 49 0.0011 30.2 2.3 58 335-395 88-156 (169)
56 TIGR03101 hydr2_PEP hydrolase, 26.3 2.9E+02 0.0062 26.9 7.8 69 33-102 40-113 (266)
57 cd02070 corrinoid_protein_B12- 26.1 1.7E+02 0.0036 27.0 5.9 45 46-99 131-177 (201)
58 PRK13363 protocatechuate 4,5-d 25.6 85 0.0018 31.9 4.1 30 67-96 70-99 (335)
59 PF03498 CDtoxinA: Cytolethal 25.5 54 0.0012 29.4 2.3 59 302-367 60-127 (150)
60 PF00975 Thioesterase: Thioest 25.3 53 0.0011 30.0 2.3 66 38-104 16-82 (229)
61 cd07372 2A5CPDO_B The beta sub 24.9 1E+02 0.0022 30.7 4.3 30 67-96 32-61 (294)
62 PLN02899 alpha-galactosidase 24.1 55 0.0012 35.9 2.5 82 303-391 486-587 (633)
63 TIGR03356 BGL beta-galactosida 24.0 2.5E+02 0.0055 29.3 7.3 68 160-230 334-415 (427)
64 TIGR01370 cysRS possible cyste 23.6 7.6E+02 0.017 24.8 15.4 150 30-199 141-300 (315)
65 PRK13364 protocatechuate 4,5-d 23.4 91 0.002 30.7 3.7 28 68-95 31-58 (278)
66 PRK13370 mhpB 3-(2,3-dihydroxy 23.4 82 0.0018 31.6 3.4 38 58-97 17-54 (313)
67 PF14088 DUF4268: Domain of un 23.1 1.7E+02 0.0037 25.2 5.1 62 324-386 26-92 (140)
68 TIGR00067 glut_race glutamate 23.0 3.4E+02 0.0074 26.1 7.6 58 36-94 12-70 (251)
69 COG4100 Cystathionine beta-lya 22.9 1.7E+02 0.0037 29.6 5.4 56 37-95 154-209 (416)
70 PF00332 Glyco_hydro_17: Glyco 22.9 2.1E+02 0.0045 28.6 6.2 51 143-193 206-262 (310)
71 cd07949 PCA_45_Doxase_B_like_1 22.8 97 0.0021 30.4 3.8 29 67-95 30-58 (276)
72 TIGR02026 BchE magnesium-proto 22.6 1.4E+02 0.0031 31.6 5.3 25 72-96 77-101 (497)
73 cd01833 XynB_like SGNH_hydrola 22.6 4.3E+02 0.0093 22.3 7.6 62 30-94 24-86 (157)
74 KOG2230 Predicted beta-mannosi 22.4 1.8E+02 0.0039 31.9 5.7 93 31-128 412-525 (867)
75 cd01828 sialate_O-acetylestera 22.3 4.8E+02 0.01 22.4 7.9 48 46-94 46-94 (169)
76 cd07359 PCA_45_Doxase_B_like S 22.1 1.2E+02 0.0026 29.3 4.2 30 67-96 26-55 (271)
77 PLN02814 beta-glucosidase 21.7 2.1E+02 0.0046 30.6 6.3 68 160-230 384-462 (504)
78 PF01120 Alpha_L_fucos: Alpha- 21.5 2.1E+02 0.0046 28.8 6.0 54 33-95 193-246 (346)
79 PRK09593 arb 6-phospho-beta-gl 21.5 2.4E+02 0.0052 30.0 6.7 37 21-61 148-184 (478)
80 cd08165 MPP_MPPE1 human MPPE1 21.5 2.1E+02 0.0046 25.2 5.4 85 1-96 1-86 (156)
81 PLN02849 beta-glucosidase 21.3 2.6E+02 0.0056 30.0 6.9 68 160-230 382-462 (503)
82 PRK15014 6-phospho-beta-glucos 21.2 2.3E+02 0.005 30.1 6.4 37 21-61 144-180 (477)
83 PF01301 Glyco_hydro_35: Glyco 21.1 5.8E+02 0.012 25.5 9.0 84 33-127 118-207 (319)
84 TIGR03695 menH_SHCHC 2-succiny 21.0 4.1E+02 0.0089 23.1 7.3 63 37-102 16-84 (251)
85 PF10035 DUF2179: Uncharacteri 20.6 1.1E+02 0.0023 22.1 2.7 22 74-95 29-50 (55)
86 PF11429 Colicin_D: Colicin D; 20.5 79 0.0017 26.1 2.2 57 221-277 12-71 (92)
87 PRK09589 celA 6-phospho-beta-g 20.4 1.8E+02 0.0039 30.9 5.4 68 160-230 365-448 (476)
No 1
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.94 E-value=3.7e-26 Score=219.18 Aligned_cols=195 Identities=24% Similarity=0.454 Sum_probs=143.5
Q ss_pred CeEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCC-------hhhHHHH
Q 039248 1 MVLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQN-------EPDWYKY 73 (400)
Q Consensus 1 ~VILD~H~~~~~Wcc~~~dgn~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~-------~~dW~~~ 73 (400)
+||||+|.. |+|+... +. +....-..+.+.++|+.||+|||+++.|++|||+|||+..... ...|.++
T Consensus 77 ~vild~h~~-~~w~~~~---~~-~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~ 151 (281)
T PF00150_consen 77 YVILDLHNA-PGWANGG---DG-YGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDW 151 (281)
T ss_dssp EEEEEEEES-TTCSSST---ST-TTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHH
T ss_pred eEEEEeccC-ccccccc---cc-cccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhH
Confidence 599999987 6675332 11 2222123455778999999999999999999999999986321 2678999
Q ss_pred HHHHHHHHHhcCCCcEEEEeCCCCCccchh-hhcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhh
Q 039248 74 ISEGARVVHKRNPHVLVFVSGLNFDLDLRF-LQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINR 152 (400)
Q Consensus 74 ~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~-l~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~ 152 (400)
+++++++||+++|+++|+|+|..|+.++.. ....|. ...+++||++|.|.+..+.+.+..... .....+...+...
T Consensus 152 ~~~~~~~Ir~~~~~~~i~~~~~~~~~~~~~~~~~~P~--~~~~~~~~~~H~Y~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 228 (281)
T PF00150_consen 152 YQRAIDAIRAADPNHLIIVGGGGWGADPDGAAADNPN--DADNNDVYSFHFYDPYDFSDQWNPGNW-GDASALESSFRAA 228 (281)
T ss_dssp HHHHHHHHHHTTSSSEEEEEEHHHHTBHHHHHHHSTT--TTTTSEEEEEEEETTTCHHTTTSTCSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcceeecCCCccccccchhhhcCcc--cccCceeEEeeEeCCCCcCCccccccc-hhhhHHHHHHHHH
Confidence 999999999999999999999999877766 444552 235899999999997665433332110 1112344555555
Q ss_pred HHHHhhcCCCCCEEEeccCCCCCCCChhhHHHHHHHHHHHHHCCCceEEeccCc
Q 039248 153 AVFLTTRKNPAPLVLSEFGFDQREVNLADNLYMTCLMAYAAETDLDWALWALQG 206 (400)
Q Consensus 153 ~gfl~~~~~g~Pv~iGEFG~~~~~~~~~d~~w~~~~l~~l~~~gi~wa~Wa~~G 206 (400)
..++.+ .+.||+|||||....... ....++..+++++++++++|++|++++
T Consensus 229 ~~~~~~--~g~pv~~gE~G~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~W~~~~ 279 (281)
T PF00150_consen 229 LNWAKK--NGKPVVVGEFGWSNNDGN-GSTDYADAWLDYLEQNGIGWIYWSWKP 279 (281)
T ss_dssp HHHHHH--TTSEEEEEEEESSTTTSC-HHHHHHHHHHHHHHHTTCEEEECEESS
T ss_pred HHHHHH--cCCeEEEeCcCCcCCCCC-cCHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556654 789999999999855432 346788888999999999999999984
No 2
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=99.63 E-value=1.7e-15 Score=155.36 Aligned_cols=173 Identities=21% Similarity=0.226 Sum_probs=109.3
Q ss_pred CeEEecCCCCCCcccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHH----HHHH
Q 039248 1 MVLLDNHISKPDWCCSNTDG-NGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWY----KYIS 75 (400)
Q Consensus 1 ~VILD~H~~~~~Wcc~~~dg-n~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~----~~~~ 75 (400)
+|+||+|....+..|-...+ ...|..+..+.+++++.|++||.|||+.++||||||+|||++. .....|. .+..
T Consensus 131 ~V~iD~H~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~~-~~~~~w~~~~~~A~~ 209 (407)
T COG2730 131 YVLIDLHGYPGGNNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNGI-VTSETWNGGDDEAYD 209 (407)
T ss_pred eEEEEecccCCCCCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCccc-CCccccccchHHHHH
Confidence 69999999887655554443 3445555556699999999999999999999999999999961 1112333 3344
Q ss_pred HHHHHHHhcCCCcEEEEeCCCCCc---------------cchhhhcCCCcCC--CCCcEEEEEeecCCCCCCC-cccCCC
Q 039248 76 EGARVVHKRNPHVLVFVSGLNFDL---------------DLRFLQKSPLALD--LDNKLVYEIHWYSFSQDQN-MWKTQP 137 (400)
Q Consensus 76 ~~~~AIr~~nP~~lI~VeG~~~~~---------------dLs~l~~~Pv~l~--~~~~lVYs~H~Y~ps~~~~-~W~~~~ 137 (400)
.+.++|.+..|.++|.+.|..+.. ........|+..+ ..++++|++|.|++..... .|....
T Consensus 210 ~v~~~i~~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~ 289 (407)
T COG2730 210 VVRNAILSNAPHWLIRVGGQGLNGWRVIMAHTYGSSDGGNDNGVYIVPVDDPGLTANKHLYAPHVYGDDVLNGGSWTVGG 289 (407)
T ss_pred HHHhhhhhcCceEEEEECcccccCCeeeccCCCccccccccCCceeeeccchhhhccceeccceeecchhhcCCCCCccC
Confidence 444566666777799999886543 0011111222222 3578899999998765433 454321
Q ss_pred CchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCC
Q 039248 138 TNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQR 175 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~ 175 (400)
...........+.+..++-.. ..+.|+++||||+...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~Ge~g~~~~ 326 (407)
T COG2730 290 EFDLAETDCAIWLNYVGHGAR-KNGYPTVIGEFGGNYN 326 (407)
T ss_pred Ccccccccceeeecceeeccc-ccceeeeeccccCccc
Confidence 111111122223333333333 5899999999999984
No 3
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=98.53 E-value=2.3e-07 Score=77.18 Aligned_cols=87 Identities=20% Similarity=0.424 Sum_probs=68.2
Q ss_pred CCCCCeeeccCCC-ceeeecCCC---CCCccccCCCCceEecCCCceeeeccCCcccee-ccccc--CcCCceEEeecCc
Q 039248 264 PLSGNCVNANARN-ELYASNRGP---FSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPML-SNDCQ--SNQSAWSLVSSSK 336 (400)
Q Consensus 264 p~tg~c~~~~~~~-~l~~~~c~~---~~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l-~~~c~--~~~~~w~~~s~~~ 336 (400)
..+++|+++.+.. .+.+.+|.. .+.|.|+.+| .|+++ +++||.+.+... ..+ -..|. +++|+|.+..++.
T Consensus 4 ~~~~~Cl~~~~~~~~v~l~~c~~~~~~Q~w~~~~~g-~~~~~-~~~Cl~~~~~~~-~~v~l~~c~~~~~~Q~W~~~~~~~ 80 (117)
T smart00458 4 GNTGKCLDVNGNSNPVGLFDCHGTGGNQLWKLTSDG-AIRIA-TDLCLTANGNTG-STVTLYSCDGDADNQYWTVNKDGT 80 (117)
T ss_pred ccCCccEecCCCCceEEEEeCCCCCccceEEEeCCC-eEEec-CCccCccCCCCC-CEEEEEECCCCCcCCEEEECCCee
Confidence 4689999988765 699999987 3999999877 88887 899999988653 333 57887 5789999988666
Q ss_pred eEEEeeecCCCCeeeEEeecCCCc
Q 039248 337 LHLATKDDEHGGELLCLQISIWTE 360 (400)
Q Consensus 337 ~~~~~~~~~~~~~~lcld~~~~~~ 360 (400)
++.. . +.+|||+.....
T Consensus 81 i~~~-~------~~~cl~~~~~~~ 97 (117)
T smart00458 81 IRNP-D------SGLCLDVKDGNT 97 (117)
T ss_pred EEeC-C------CCEEEecCCCCC
Confidence 6432 4 789999987553
No 4
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.33 E-value=3e-05 Score=74.81 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCC---hhhHH-----HHHHHHHHHHHhcCCCcEEEEeCCC--CC-c
Q 039248 31 PNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQN---EPDWY-----KYISEGARVVHKRNPHVLVFVSGLN--FD-L 99 (400)
Q Consensus 31 ~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~---~~dW~-----~~~~~~~~AIr~~nP~~lI~VeG~~--~~-~ 99 (400)
.+.+.+.-+.+++||++. |...|+.|||....+. ...|. .++..+.+++|+++|+..+++...+ .. .
T Consensus 56 ~~~~~~~i~~v~~ry~g~--i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~~~ 133 (254)
T smart00633 56 LARLENHIKTVVGRYKGK--IYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDYNTEEPNA 133 (254)
T ss_pred HHHHHHHHHHHHHHhCCc--ceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCccH
Confidence 466788889999999977 6779999999753211 12454 5677889999999999999996422 11 0
Q ss_pred c----chhh---hcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCC
Q 039248 100 D----LRFL---QKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGF 172 (400)
Q Consensus 100 d----Ls~l---~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~ 172 (400)
. +..+ ....+.+ +-+=+..|++... . ....+.+.+++ +. +.|.||+|+||++
T Consensus 134 k~~~~~~~v~~l~~~g~~i---DgiGlQ~H~~~~~-~-----------~~~~~~~~l~~----~~--~~g~pi~iTE~dv 192 (254)
T smart00633 134 KRQAIYELVKKLKAKGVPI---DGIGLQSHLSLGS-P-----------NIAEIRAALDR----FA--SLGLEIQITELDI 192 (254)
T ss_pred HHHHHHHHHHHHHHCCCcc---ceeeeeeeecCCC-C-----------CHHHHHHHHHH----HH--HcCCceEEEEeec
Confidence 0 1111 1121211 3444566775311 1 12345555554 22 3689999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHCC--CceEEeccC
Q 039248 173 DQREVNLADNLYMTCLMAYAAETD--LDWALWALQ 205 (400)
Q Consensus 173 ~~~~~~~~d~~w~~~~l~~l~~~g--i~wa~Wa~~ 205 (400)
..........++++.+++.+.++. .|.++|.+.
T Consensus 193 ~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 193 SGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 875322345678899999988764 677888765
No 5
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=98.21 E-value=6.2e-06 Score=68.22 Aligned_cols=85 Identities=24% Similarity=0.473 Sum_probs=64.5
Q ss_pred CCCeeeccCC---CceeeecCCCC---CCccccCCCCceEecCCCceeeeccCCcccee-ccccc--CcCCceEEeecCc
Q 039248 266 SGNCVNANAR---NELYASNRGPF---SRWSYGGDGTPIRLMDRSLCLKVVGDGLPPML-SNDCQ--SNQSAWSLVSSSK 336 (400)
Q Consensus 266 tg~c~~~~~~---~~l~~~~c~~~---~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l-~~~c~--~~~~~w~~~s~~~ 336 (400)
+|+|+++.+. ..+.+.+|... |.|.++.++ .|+++.+.+||.+.+......+ ...|. +++|+|++.+++.
T Consensus 9 ~~~cL~~~~~~~~~~v~~~~c~~~~~~Q~W~~~~~g-~~~~~~~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~~ 87 (124)
T cd00161 9 TGLCLDVNGGSDGGPVQLYPCHGNGNNQKWTLTSDG-TIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDGT 87 (124)
T ss_pred CCeEEECCCCCCCCEEEEEECCCCCccCCEEEeCCC-eEEEcCCCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCcE
Confidence 8999999874 46999999864 899999976 8888778899999886422233 46787 4689999998754
Q ss_pred eEEEeeecCCCCeeeEEeecCC
Q 039248 337 LHLATKDDEHGGELLCLQISIW 358 (400)
Q Consensus 337 ~~~~~~~~~~~~~~lcld~~~~ 358 (400)
+. ... +.+|||+...
T Consensus 88 i~-~~~------~~~cl~~~~~ 102 (124)
T cd00161 88 IR-NLK------SGKCLDVKGG 102 (124)
T ss_pred EE-ECC------CCeEEeCCCC
Confidence 42 222 5899999875
No 6
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.13 E-value=0.00014 Score=78.65 Aligned_cols=177 Identities=15% Similarity=0.194 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccchhhhcCCCc
Q 039248 31 PNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLRFLQKSPLA 110 (400)
Q Consensus 31 ~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l~~~Pv~ 110 (400)
.+.+.+.++.|.+|++++|.||+..|.||+.... ..-..+++++.+.||+.||.++|......... . ....+.
T Consensus 389 ~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~~---~~~~~~~~~l~~~~k~~DptR~vt~~~~~~~~-~---~~~~~~ 461 (604)
T PRK10150 389 QQAHLQAIRELIARDKNHPSVVMWSIANEPASRE---QGAREYFAPLAELTRKLDPTRPVTCVNVMFAT-P---DTDTVS 461 (604)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEeeccCCCccc---hhHHHHHHHHHHHHHhhCCCCceEEEecccCC-c---cccccc
Confidence 3556778999999999999999999999987532 23345667779999999999999987632110 0 000110
Q ss_pred CCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhh-HHHHhhcCCCCCEEEeccCCCCCC------C----Ch
Q 039248 111 LDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINR-AVFLTTRKNPAPLVLSEFGFDQRE------V----NL 179 (400)
Q Consensus 111 l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~-~gfl~~~~~g~Pv~iGEFG~~~~~------~----~~ 179 (400)
...| |+++|.|.. |..... . .......+... ..+.. ..+.|++++|||+.... + .+
T Consensus 462 ~~~D---v~~~N~Y~~------wy~~~~-~-~~~~~~~~~~~~~~~~~--~~~kP~~isEyg~~~~~~~h~~~~~~~~ee 528 (604)
T PRK10150 462 DLVD---VLCLNRYYG------WYVDSG-D-LETAEKVLEKELLAWQE--KLHKPIIITEYGADTLAGLHSMYDDMWSEE 528 (604)
T ss_pred Cccc---EEEEcccce------ecCCCC-C-HHHHHHHHHHHHHHHHH--hcCCCEEEEccCCccccccccCCCCCCCHH
Confidence 0011 889887642 111000 0 01111111111 01111 13799999999964321 1 11
Q ss_pred hhHHHHHHHHHHHHHCC--CceEEeccCccccccCC-CCCCCCccccccCCC
Q 039248 180 ADNLYMTCLMAYAAETD--LDWALWALQGSYYLRGG-LKGAEETFGALDSTW 228 (400)
Q Consensus 180 ~d~~w~~~~l~~l~~~g--i~wa~Wa~~Gsyy~r~g-~~~~~et~Gll~~dW 228 (400)
....+++...+.++++. +|-+.|++.- |..-.| .+..++..||++.|.
T Consensus 529 ~q~~~~~~~~~~~~~~p~~~G~~iW~~~D-~~~~~g~~~~~g~~~Gl~~~dr 579 (604)
T PRK10150 529 YQCAFLDMYHRVFDRVPAVVGEQVWNFAD-FATSQGILRVGGNKKGIFTRDR 579 (604)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEEeeec-cCCCCCCcccCCCcceeEcCCC
Confidence 12455666677777654 4666777531 100011 112346789998886
No 7
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=98.13 E-value=6.2e-06 Score=66.95 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=45.8
Q ss_pred HHHHhcCCCcEEEEeccCC-CCCCC-------C--ChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccchhhhcCCCc
Q 039248 41 VADRFKEKRQVVAISLRNE-LRGPR-------Q--NEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLRFLQKSPLA 110 (400)
Q Consensus 41 lA~ryk~~p~Vvg~DL~NE-P~~~~-------~--~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l~~~Pv~ 110 (400)
|-++|++.+.|++-||.|| |.... . ....-.+.+++++.+||+++|+++|.++. |+.+...+...++.
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g~--~~~~~~~~~~~~~~ 78 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSGF--WGGDWEDLEQLQAE 78 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--B----S-TTHHHHS--T
T ss_pred CchhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEeec--ccCCHHHHHHhchh
Confidence 4579999999999999999 66111 1 13456678899999999999999987653 44333333332211
Q ss_pred CCCCCcEEEEEeec
Q 039248 111 LDLDNKLVYEIHWY 124 (400)
Q Consensus 111 l~~~~~lVYs~H~Y 124 (400)
. -=|+++|.|
T Consensus 79 ~----~DvisfH~Y 88 (88)
T PF12876_consen 79 N----LDVISFHPY 88 (88)
T ss_dssp T-----SSEEB-EE
T ss_pred c----CCEEeeecC
Confidence 1 117999998
No 8
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.82 E-value=0.00027 Score=69.52 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 31 PNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 31 ~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
.+.+.+.++.|.+|++++|.||...+.||+ .....++++.+.+|+.||.++|.....
T Consensus 103 ~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~--------~~~~~~~~l~~~~k~~DptRpv~~~~~ 159 (298)
T PF02836_consen 103 RENAEQELREMVRRDRNHPSIIMWSLGNES--------DYREFLKELYDLVKKLDPTRPVTYASN 159 (298)
T ss_dssp HHHHHHHHHHHHHHHTT-TTEEEEEEEESS--------HHHHHHHHHHHHHHHH-TTSEEEEETG
T ss_pred HHHHHHHHHHHHHcCcCcCchheeecCccC--------ccccchhHHHHHHHhcCCCCceeeccc
Confidence 356778899999999999999999999999 345667788999999999999987765
No 9
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.74 E-value=3.9e-05 Score=64.13 Aligned_cols=84 Identities=23% Similarity=0.466 Sum_probs=60.0
Q ss_pred CCCeeecc----CCCceeeecCCCC--CCccccCCCCceEecCC-CceeeeccCCcccee-ccccc--CcCCceEEeecC
Q 039248 266 SGNCVNAN----ARNELYASNRGPF--SRWSYGGDGTPIRLMDR-SLCLKVVGDGLPPML-SNDCQ--SNQSAWSLVSSS 335 (400)
Q Consensus 266 tg~c~~~~----~~~~l~~~~c~~~--~~W~~~~~~~~~~~~~~-~~cl~a~~~g~~~~l-~~~c~--~~~~~w~~~s~~ 335 (400)
+|+|+++. ....+.+.+|..+ |.|.++..+ .|..... .+||.+.+.+...++ -..|. +.+++|.+..+.
T Consensus 11 ~~~cl~~~~~~~~~~~v~l~~c~~~~~Q~w~~~~~~-~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~ 89 (124)
T PF00652_consen 11 SGLCLDVQGSTKNGSPVVLYPCDGSDNQLWRFDPDG-QIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDG 89 (124)
T ss_dssp GGEEEEEGGSSSTTTBEEEEE--SSGGGEEEEETTS-BEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTS
T ss_pred CCCeEEEcCCCCCCCEEEEEECCCCCceeEEEcCCC-ceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCe
Confidence 89999998 2235999999996 799999998 5555444 459999998822244 57788 445899999955
Q ss_pred ceEEEeeecCCCCeeeEEeecC
Q 039248 336 KLHLATKDDEHGGELLCLQISI 357 (400)
Q Consensus 336 ~~~~~~~~~~~~~~~lcld~~~ 357 (400)
.++ ... +.+|||+..
T Consensus 90 ~i~-n~~------s~~cL~~~~ 104 (124)
T PF00652_consen 90 RIR-NKN------SGLCLDVKG 104 (124)
T ss_dssp BEE-ETT------TTEEEEEGG
T ss_pred eEE-eCC------CCEEEEecC
Confidence 542 222 579999987
No 10
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.68 E-value=0.00039 Score=69.92 Aligned_cols=142 Identities=18% Similarity=0.283 Sum_probs=82.3
Q ss_pred HHHHhcCCCc-EEEEeccCCCC-------CCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCC-c-----cchhhhc
Q 039248 41 VADRFKEKRQ-VVAISLRNELR-------GPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFD-L-----DLRFLQK 106 (400)
Q Consensus 41 lA~ryk~~p~-Vvg~DL~NEP~-------~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~-~-----dLs~l~~ 106 (400)
+-+.+|..-- +=.+-+=||-. +...+.....++...+++|||+++|+..|+|--.+-+ . -+..+..
T Consensus 115 vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~ 194 (332)
T PF07745_consen 115 VLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKA 194 (332)
T ss_dssp HHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHh
Confidence 3455554322 22367888843 3223556667788899999999999999998632211 1 1222333
Q ss_pred CCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCCC----------
Q 039248 107 SPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQRE---------- 176 (400)
Q Consensus 107 ~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~~---------- 176 (400)
.-+ ++| |..+++|.+...+ ..++...+.. +.+ +.+.||+|.|.|.....
T Consensus 195 ~g~--d~D---viGlSyYP~w~~~-----------l~~l~~~l~~----l~~-ry~K~V~V~Et~yp~t~~d~D~~~n~~ 253 (332)
T PF07745_consen 195 AGV--DFD---VIGLSYYPFWHGT-----------LEDLKNNLND----LAS-RYGKPVMVVETGYPWTLDDGDGTGNII 253 (332)
T ss_dssp TTG--G-S---EEEEEE-STTST------------HHHHHHHHHH----HHH-HHT-EEEEEEE---SBS--SSSS--SS
T ss_pred cCC--Ccc---eEEEecCCCCcch-----------HHHHHHHHHH----HHH-HhCCeeEEEeccccccccccccccccC
Confidence 333 333 8999999854321 2233333332 322 46789999999977651
Q ss_pred -----------CChhhHHHHHHHHHHHHH----CCCceEEec
Q 039248 177 -----------VNLADNLYMTCLMAYAAE----TDLDWALWA 203 (400)
Q Consensus 177 -----------~~~~d~~w~~~~l~~l~~----~gi~wa~Wa 203 (400)
+.....+|++++++.+.+ +|+|-+||.
T Consensus 254 ~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~~~g~GvfYWe 295 (332)
T PF07745_consen 254 GATSLISGYPATPQGQADFLRDLINAVKNVPNGGGLGVFYWE 295 (332)
T ss_dssp SSSTGGTTS-SSHHHHHHHHHHHHHHHHTS--TTEEEEEEE-
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHhccCCeEEEEeec
Confidence 112467899999999887 678999995
No 11
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=97.32 E-value=0.00042 Score=57.39 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=52.2
Q ss_pred CCCeeeccCCC--ceeeecCCC-C--CCccccCCCCceEecCCCceeeeccCCcccee-ccccc-CcCCceEEe
Q 039248 266 SGNCVNANARN--ELYASNRGP-F--SRWSYGGDGTPIRLMDRSLCLKVVGDGLPPML-SNDCQ-SNQSAWSLV 332 (400)
Q Consensus 266 tg~c~~~~~~~--~l~~~~c~~-~--~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l-~~~c~-~~~~~w~~~ 332 (400)
+++|+++.+.. .+.+..|.. . ++|.+...+ .|....+++||++.+....+.| ...|. +++|+|.+.
T Consensus 45 ~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~-~i~~~~~~~cl~~~~~~~~~~~~~~~c~~~~~Q~W~~~ 117 (117)
T smart00458 45 TDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDG-TIRNPDSGLCLDVKDGNTGTKVILWTCNGNPNQKWIFE 117 (117)
T ss_pred CCccCccCCCCCCEEEEEECCCCCcCCEEEECCCe-eEEeCCCCEEEecCCCCCCceEEEEeCCCCccccEEeC
Confidence 89999987664 589999976 3 899999876 7777789999999876554344 67788 678999863
No 12
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.24 E-value=0.0083 Score=57.52 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCCCC---ChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCc-----cchhhhcCC
Q 039248 37 GLSFVADRFKEKRQVVAISLRNELRGPRQ---NEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDL-----DLRFLQKSP 108 (400)
Q Consensus 37 ~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~---~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~-----dLs~l~~~P 108 (400)
.++.+++. +.... -+-.+|||....+ +..+-.....+.++.+|. +...|+-..+.+.. .++.+...-
T Consensus 55 ~~~~v~~~-~~~~~--~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~--~~~~l~sPa~~~~~~~~~~g~~Wl~~F~ 129 (239)
T PF11790_consen 55 WLANVQNA-HPGSK--HLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS--PGVKLGSPAVAFTNGGTPGGLDWLSQFL 129 (239)
T ss_pred HHHHHHhh-ccCcc--ceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc--CCcEEECCeecccCCCCCCccHHHHHHH
Confidence 34455555 22222 3456799987653 222222333333444442 55555544453322 233332100
Q ss_pred CcCCCCCcE-EEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCC---CCChhhHHH
Q 039248 109 LALDLDNKL-VYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQR---EVNLADNLY 184 (400)
Q Consensus 109 v~l~~~~~l-VYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~---~~~~~d~~w 184 (400)
-....+-++ +.++|+|... ...+.+.+... .+ ..+.||+|+|||.... ........|
T Consensus 130 ~~~~~~~~~D~iavH~Y~~~--------------~~~~~~~i~~~----~~-~~~kPIWITEf~~~~~~~~~~~~~~~~f 190 (239)
T PF11790_consen 130 SACARGCRVDFIAVHWYGGD--------------ADDFKDYIDDL----HN-RYGKPIWITEFGCWNGGSQGSDEQQASF 190 (239)
T ss_pred HhcccCCCccEEEEecCCcC--------------HHHHHHHHHHH----HH-HhCCCEEEEeecccCCCCCCCHHHHHHH
Confidence 000001122 7999999321 12333333331 11 3569999999997542 122335789
Q ss_pred HHHHHHHHHHCC
Q 039248 185 MTCLMAYAAETD 196 (400)
Q Consensus 185 ~~~~l~~l~~~g 196 (400)
++.++.+|++..
T Consensus 191 l~~~~~~ld~~~ 202 (239)
T PF11790_consen 191 LRQALPWLDSQP 202 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999999998875
No 13
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=97.02 E-value=0.0012 Score=54.97 Aligned_cols=69 Identities=29% Similarity=0.560 Sum_probs=52.5
Q ss_pred ceeecCCCCCeeeccCCC---ceeeecCCCC---CCccccCCCCceEecCCCceeeecc--CCccceeccccc-CcCCce
Q 039248 259 YIIFHPLSGNCVNANARN---ELYASNRGPF---SRWSYGGDGTPIRLMDRSLCLKVVG--DGLPPMLSNDCQ-SNQSAW 329 (400)
Q Consensus 259 ~~~~~p~tg~c~~~~~~~---~l~~~~c~~~---~~W~~~~~~~~~~~~~~~~cl~a~~--~g~~~~l~~~c~-~~~~~w 329 (400)
.+.....+..|+.+.+.. .+.+.+|... ++|.+.+.+ .|.-..+++||+..+ .|.++.+. .|. +++|+|
T Consensus 47 ~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q~W~~~~~~-~i~n~~s~~cL~~~~~~~~~~l~~~-~c~~~~~Q~W 124 (124)
T PF00652_consen 47 QIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQRWKFDPDG-RIRNKNSGLCLDVKGGSDGNPLVLW-PCNGSPNQQW 124 (124)
T ss_dssp BEEETTETTEEEEESSSSTTEBEEEEETTTTGGGGBEEEETTS-BEEETTTTEEEEEGGGSTTEBEEEE-E-TSSGGGBE
T ss_pred ceeeccCcceEEEeeccCCCceEEEeeccCCccCCeEEEcCCe-eEEeCCCCEEEEecCCCCCCEEEEE-ECCCCccccC
Confidence 344444445599988766 5999999977 799999966 777777999999999 66665555 887 778888
No 14
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.87 E-value=0.012 Score=58.88 Aligned_cols=151 Identities=15% Similarity=0.301 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCC-----ChhhHH-----HHHHHHHHHHHhcCCCcEEEEeCCCCCccc
Q 039248 32 NEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQ-----NEPDWY-----KYISEGARVVHKRNPHVLVFVSGLNFDLDL 101 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~-----~~~dW~-----~~~~~~~~AIr~~nP~~lI~VeG~~~~~dL 101 (400)
+...+..+.|++||++...|...|+.|||..... ....|+ .++..+.+..|+++|+...|+ ..|+...
T Consensus 106 ~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~~r~~~~~~~lG~~yi~~aF~~A~~~~P~a~L~~--NDy~~~~ 183 (320)
T PF00331_consen 106 ARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGGLRDSPWYDALGPDYIADAFRAAREADPNAKLFY--NDYNIES 183 (320)
T ss_dssp HHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSSBCTSHHHHHHTTCHHHHHHHHHHHHHTTSEEEE--EESSTTS
T ss_pred HHHHHHHHHHHhHhccccceEEEEEeeecccCCCccccccCChhhhcccHhHHHHHHHHHHHhCCCcEEEe--ccccccc
Confidence 4456678899999998888999999999976431 113576 366788999999999999999 3333211
Q ss_pred h-----------hhhcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEecc
Q 039248 102 R-----------FLQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEF 170 (400)
Q Consensus 102 s-----------~l~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEF 170 (400)
. .+...-+.+ +-+=+-.|+-.... .+.+.+.+++ | . +.|.||.|+||
T Consensus 184 ~~k~~~~~~lv~~l~~~gvpI---dgIG~Q~H~~~~~~-------------~~~i~~~l~~---~-~--~~Gl~i~ITEl 241 (320)
T PF00331_consen 184 PAKRDAYLNLVKDLKARGVPI---DGIGLQSHFDAGYP-------------PEQIWNALDR---F-A--SLGLPIHITEL 241 (320)
T ss_dssp THHHHHHHHHHHHHHHTTHCS----EEEEEEEEETTSS-------------HHHHHHHHHH---H-H--TTTSEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhCCCcc---ceechhhccCCCCC-------------HHHHHHHHHH---H-H--HcCCceEEEee
Confidence 1 111122212 45677888754221 2344555554 2 2 47899999999
Q ss_pred CCCCCCCC------hhhHHHHHHHHHHHHHCC---C-ceEEeccCc
Q 039248 171 GFDQREVN------LADNLYMTCLMAYAAETD---L-DWALWALQG 206 (400)
Q Consensus 171 G~~~~~~~------~~d~~w~~~~l~~l~~~g---i-~wa~Wa~~G 206 (400)
-+...... ....++++.+++.+.++. + +.++|-+.-
T Consensus 242 Dv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D 287 (320)
T PF00331_consen 242 DVRDDDNPPDAEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTD 287 (320)
T ss_dssp EEESSSTTSCHHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBT
T ss_pred eecCCCCCcchHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCC
Confidence 88776532 134678888888888877 4 577888764
No 15
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=96.75 E-value=0.0025 Score=52.41 Aligned_cols=65 Identities=23% Similarity=0.509 Sum_probs=50.2
Q ss_pred CCCeeeccCC---CceeeecCCC---CCCccccCCCCceEecCCCceeeeccCCc-ccee-ccccc-CcCCceEE
Q 039248 266 SGNCVNANAR---NELYASNRGP---FSRWSYGGDGTPIRLMDRSLCLKVVGDGL-PPML-SNDCQ-SNQSAWSL 331 (400)
Q Consensus 266 tg~c~~~~~~---~~l~~~~c~~---~~~W~~~~~~~~~~~~~~~~cl~a~~~g~-~~~l-~~~c~-~~~~~w~~ 331 (400)
+++|+++.+. ..+.+.+|.. .++|.+.+.+ .|..+.+++||.+.+.+. .+.+ ...|. +..|+|++
T Consensus 51 ~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~~~~~~-~i~~~~~~~cl~~~~~~~~~~~v~~~~c~~~~~Q~W~~ 124 (124)
T cd00161 51 SNLCLDVGGDAPGSKVRLYTCSGGSDNQRWTFNKDG-TIRNLKSGKCLDVKGGNTNGTNLILWTCDGGPNQKWKF 124 (124)
T ss_pred CCeEEcccCCCCCCEEEEEECCCCCcCCEEEECCCc-EEEECCCCeEEeCCCCCCCCCEEEEEeCCCCccceEeC
Confidence 7999998765 4699999987 3899999876 777777899999987642 2233 67787 67899974
No 16
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.011 Score=61.54 Aligned_cols=199 Identities=18% Similarity=0.160 Sum_probs=107.5
Q ss_pred eEEec--CCCCCCcccCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC-C---ChhhHHH
Q 039248 2 VLLDN--HISKPDWCCSN---TDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPR-Q---NEPDWYK 72 (400)
Q Consensus 2 VILD~--H~~~~~Wcc~~---~dgn~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~-~---~~~dW~~ 72 (400)
++|+. |++--.|.-.- .....+..|+.+ ...+.++-+.+.+-||-+|.+.|..|.|||.-.. . +.-+|.+
T Consensus 86 tlivg~~hmgg~Nw~Ipwag~~~pdn~iyD~k~-~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f~~w~~ 164 (587)
T COG3934 86 TLIVGLKHMGGTNWRIPWAGEQSPDNVIYDPKF-RGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNFWDWSG 164 (587)
T ss_pred EEeecccccCcceeEeecCCCCCccccccchhh-cccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHHHHHHH
Confidence 46677 76654443221 111233334323 2456777888889999999999999999987532 2 2346666
Q ss_pred HHHHHHHHHHhcCCCcEEEEeCCCCCccchhhhcCCCc----CCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHH-H
Q 039248 73 YISEGARVVHKRNPHVLVFVSGLNFDLDLRFLQKSPLA----LDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVT-Q 147 (400)
Q Consensus 73 ~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l~~~Pv~----l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~-~ 147 (400)
.| ..-|...+|+++|-|+-..+-- .+. .|-+ .++ =++|.|...+.. +--+...... .
T Consensus 165 em---y~yiK~ldd~hlvsvGD~~sp~--~~~--~pyN~r~~vDy-----a~~hLY~hyd~s------l~~r~s~~yg~~ 226 (587)
T COG3934 165 EM---YAYIKWLDDGHLVSVGDPASPW--PQY--APYNARFYVDY-----AANHLYRHYDTS------LVSRVSTVYGKP 226 (587)
T ss_pred HH---HHHhhccCCCCeeecCCcCCcc--ccc--CCcccceeecc-----ccchhhhhccCC------hhheeeeeecch
Confidence 55 7889999999999987543310 011 1111 112 245555321111 0000000000 0
Q ss_pred HHHhhHHHHhhcCCC-CCEEEeccCCCCCCCChhhHHHHHHHHHHHHHCCCceEEeccCccccccCCCCC-------CCC
Q 039248 148 SFINRAVFLTTRKNP-APLVLSEFGFDQREVNLADNLYMTCLMAYAAETDLDWALWALQGSYYLRGGLKG-------AEE 219 (400)
Q Consensus 148 ~~~~~~gfl~~~~~g-~Pv~iGEFG~~~~~~~~~d~~w~~~~l~~l~~~gi~wa~Wa~~Gsyy~r~g~~~-------~~e 219 (400)
.++. . ...| .||++=|||+....+......|+-.....+.--+.|-.+|++.+ +-+|..+ .+.
T Consensus 227 ~l~i-----~-~~~g~~pV~leefGfsta~g~e~s~ayfiw~~lal~~ggdGaLiwclsd---f~~gsdd~ey~w~p~el 297 (587)
T COG3934 227 YLDI-----P-TIMGWQPVNLEEFGFSTAFGQENSPAYFIWIRLALDTGGDGALIWCLSD---FHLGSDDSEYTWGPMEL 297 (587)
T ss_pred hhcc-----c-hhcccceeeccccCCcccccccccchhhhhhhhHHhhcCCceEEEEecC---CccCCCCCCCccccccc
Confidence 1110 1 1356 99999999998875433333333333335555677888999975 1111111 234
Q ss_pred ccccccCCC
Q 039248 220 TFGALDSTW 228 (400)
Q Consensus 220 t~Gll~~dW 228 (400)
+|||++.|-
T Consensus 298 ~fgiIradg 306 (587)
T COG3934 298 EFGIIRADG 306 (587)
T ss_pred eeeeecCCC
Confidence 578887774
No 17
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=96.54 E-value=0.013 Score=62.01 Aligned_cols=204 Identities=15% Similarity=0.282 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCC---cE--EEEeccCCCCCCC----CChhhHHHHHHHHHHHHHhcCCCcEEEEeCC--CC
Q 039248 29 FDPNEWMKGLSFVADRFKEKR---QV--VAISLRNELRGPR----QNEPDWYKYISEGARVVHKRNPHVLVFVSGL--NF 97 (400)
Q Consensus 29 ~~~d~wi~~W~~lA~ryk~~p---~V--vg~DL~NEP~~~~----~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~--~~ 97 (400)
-+.+.|.++.+.+++||.+.- .| --||+-|||.... ....++.++++.++++|++++|...| +|. .+
T Consensus 129 ~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~~~v--GGp~~~~ 206 (486)
T PF01229_consen 129 KDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPELKV--GGPAFAW 206 (486)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TTSEE--EEEEEET
T ss_pred ccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCCCcc--cCccccc
Confidence 467889988888888875421 11 1499999997642 23457889999999999999999764 554 34
Q ss_pred Cc------cchhhhcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhh---hhHHHHHHhhHHHHhh-cCCCCCEEE
Q 039248 98 DL------DLRFLQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVC---YKVTQSFINRAVFLTT-RKNPAPLVL 167 (400)
Q Consensus 98 ~~------dLs~l~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~---~~~~~~~~~~~gfl~~-~~~g~Pv~i 167 (400)
+. -+.+.....+.++ .+|+|.|+....... ........ ..+...+...-..+.+ ..-++|+++
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~D-----fiS~H~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~ 279 (486)
T PF01229_consen 207 AYDEWCEDFLEFCKGNNCPLD-----FISFHSYGTDSAEDI--NENMYERIEDSRRLFPELKETRPIINDEADPNLPLYI 279 (486)
T ss_dssp T-THHHHHHHHHHHHCT---S-----EEEEEEE-BESESE---SS-EEEEB--HHHHHHHHHHHHHHHHTSSSTT--EEE
T ss_pred cHHHHHHHHHHHHhcCCCCCC-----EEEEEeccccccccc--chhHHhhhhhHHHHHHHHHHHHHHHhhccCCCCceee
Confidence 32 1222232333333 599999984321100 00000001 1112222222122222 123588999
Q ss_pred eccCCCCCCCC-hhhHHHHHH-HHH-HHHHCC--Cc-eEEeccCccccccCCCCC--CCCccccccCCCCCCCChhHHHH
Q 039248 168 SEFGFDQREVN-LADNLYMTC-LMA-YAAETD--LD-WALWALQGSYYLRGGLKG--AEETFGALDSTWQHPRNPNFLER 239 (400)
Q Consensus 168 GEFG~~~~~~~-~~d~~w~~~-~l~-~l~~~g--i~-wa~Wa~~Gsyy~r~g~~~--~~et~Gll~~dW~t~r~~~~l~r 239 (400)
+||+......+ ..|..|..+ ++. .+...+ ++ .+||++.-.|.- .+.+. .-..+|||..+ ..+.|.+ .+
T Consensus 280 tE~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~~l~~~sywt~sD~Fee-~~~~~~pf~ggfGLlt~~--gI~KPa~-~A 355 (486)
T PF01229_consen 280 TEWNASISPRNPQHDTCFKAAYIAKNLLSNDGAFLDSFSYWTFSDRFEE-NGTPRKPFHGGFGLLTKL--GIPKPAY-YA 355 (486)
T ss_dssp EEEES-SSTT-GGGGSHHHHHHHHH-HHHHGGGT-SEEEES-SBS---T-TSS-SSSSSS-S-SEECC--CEE-HHH-HH
T ss_pred cccccccCCCcchhccccchhhHHHHHHHhhhhhhhhhhccchhhhhhc-cCCCCCceecchhhhhcc--CCCchHH-HH
Confidence 99998765432 223334333 333 333332 44 789999633210 01111 11347999988 5666643 23
Q ss_pred HHHhhh
Q 039248 240 LRFLQT 245 (400)
Q Consensus 240 l~~l~~ 245 (400)
+..|..
T Consensus 356 ~~~L~~ 361 (486)
T PF01229_consen 356 FQLLNK 361 (486)
T ss_dssp HHHHTT
T ss_pred HHHHHh
Confidence 444433
No 18
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=96.27 E-value=0.12 Score=52.68 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 039248 32 NEWMKGLSFVADRFKEKRQVVAISLRNELRG 62 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~ 62 (400)
+...++.+.||+||+++|+|+++.|-|||..
T Consensus 110 ~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 110 EYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp HHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred HHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 4567788999999999999999999999965
No 19
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.17 Score=50.14 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=83.4
Q ss_pred HHHHHhcCCCcEE-EEeccCCCCCC-------CCChhhHHHHHHHHHHHHHhcCCCcEEEE---eCCCCCc---cchhhh
Q 039248 40 FVADRFKEKRQVV-AISLRNELRGP-------RQNEPDWYKYISEGARVVHKRNPHVLVFV---SGLNFDL---DLRFLQ 105 (400)
Q Consensus 40 ~lA~ryk~~p~Vv-g~DL~NEP~~~-------~~~~~dW~~~~~~~~~AIr~~nP~~lI~V---eG~~~~~---dLs~l~ 105 (400)
.+-+.+|+.--.. ..-+=||-.+. ..+.+.|..+..+++.|||+++|+.+|++ +|..-+. -+..+.
T Consensus 160 ~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~p~ikv~lHla~g~~n~~y~~~fd~lt 239 (403)
T COG3867 160 YVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVSPTIKVALHLAEGENNSLYRWIFDELT 239 (403)
T ss_pred HHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcCCCceEEEEecCCCCCchhhHHHHHHH
Confidence 3444555432211 24567886654 22566778888899999999999999887 3433221 122233
Q ss_pred cCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCCC---------
Q 039248 106 KSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQRE--------- 176 (400)
Q Consensus 106 ~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~~--------- 176 (400)
.+.+++ | |+..-+|.+...+ ..++...+.+. +. +++.-|+|-|-+..+.-
T Consensus 240 k~nvdf--D---Vig~SyYpyWhgt-----------l~nL~~nl~di----a~-rY~K~VmV~Etay~yTlEdgDg~~Nt 298 (403)
T COG3867 240 KRNVDF--D---VIGSSYYPYWHGT-----------LNNLTTNLNDI----AS-RYHKDVMVVETAYTYTLEDGDGHENT 298 (403)
T ss_pred HcCCCc--e---EEeeeccccccCc-----------HHHHHhHHHHH----HH-HhcCeEEEEEecceeeeccCCCCCCc
Confidence 333332 2 8888888754432 34455555542 12 35566788787663210
Q ss_pred -C-----------ChhhHHHHHHHHHHHHH----CCCceEEecc
Q 039248 177 -V-----------NLADNLYMTCLMAYAAE----TDLDWALWAL 204 (400)
Q Consensus 177 -~-----------~~~d~~w~~~~l~~l~~----~gi~wa~Wa~ 204 (400)
+ -.....+++++++.... +|+|-+||.=
T Consensus 299 ~~~~~~t~~ypitVQGQat~vrDvie~V~nvp~~~GlGvFYWEp 342 (403)
T COG3867 299 FPSSEQTGGYPITVQGQATFVRDVIEAVKNVPKSNGLGVFYWEP 342 (403)
T ss_pred CCcccccCCCceEEechhhHHHHHHHHHHhCCCCCceEEEEecc
Confidence 0 01235667777776654 6889899963
No 20
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=95.88 E-value=0.014 Score=48.30 Aligned_cols=75 Identities=19% Similarity=0.270 Sum_probs=55.9
Q ss_pred cceeecCCCCCeeeccCCC-----ceeeecCCCC--CCccccCCCC---ceEecCCCceeeeccCCccc---eecccc-c
Q 039248 258 SYIIFHPLSGNCVNANARN-----ELYASNRGPF--SRWSYGGDGT---PIRLMDRSLCLKVVGDGLPP---MLSNDC-Q 323 (400)
Q Consensus 258 ~~~~~~p~tg~c~~~~~~~-----~l~~~~c~~~--~~W~~~~~~~---~~~~~~~~~cl~a~~~g~~~---~l~~~c-~ 323 (400)
++.|....||+|+++.+.+ .+.+++|... ++|...+.+. .|.-+.+++||.+.|.+... ...+.| .
T Consensus 16 ~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~~~~g~~v~~~~~~~ 95 (105)
T PF14200_consen 16 YYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGSTANGTNVQQWEYDN 95 (105)
T ss_dssp EEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGSSSTTEBEEEEE-ST
T ss_pred EEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCCCCCCCEEEEEeCCC
Confidence 5778888999999997653 4899999755 8999976652 25555789999999866442 336777 4
Q ss_pred -CcCCceEEe
Q 039248 324 -SNQSAWSLV 332 (400)
Q Consensus 324 -~~~~~w~~~ 332 (400)
+++|+|++.
T Consensus 96 ~~~~Q~W~l~ 105 (105)
T PF14200_consen 96 GSDNQQWKLE 105 (105)
T ss_dssp SSGGGEEEEE
T ss_pred CCccCEEEeC
Confidence 889999973
No 21
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=95.16 E-value=0.18 Score=58.05 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 32 NEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
+.+++-.+.|.+|++++|.||...|-||.... ..+.++++.||+.||.++|..+|
T Consensus 422 ~~~~~~~~~mV~RdrNHPSIi~WslGNE~~~g--------~~~~~~~~~~k~~DptR~v~~~~ 476 (1021)
T PRK10340 422 KVYVDRIVRHIHAQKNHPSIIIWSLGNESGYG--------CNIRAMYHAAKALDDTRLVHYEE 476 (1021)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECccCcccc--------HHHHHHHHHHHHhCCCceEEeCC
Confidence 44566688999999999999999999997432 12356789999999999998877
No 22
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=95.13 E-value=0.17 Score=58.33 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 32 NEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
+++.+-++.|.+|.|+||.||...|-||+... . ...++.+.+|+.||.++|..++.
T Consensus 435 ~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~~g-~-------~~~~l~~~~k~~DptRpV~y~~~ 490 (1027)
T PRK09525 435 PAMSERVTRMVQRDRNHPSIIIWSLGNESGHG-A-------NHDALYRWIKSNDPSRPVQYEGG 490 (1027)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCccCCCcC-h-------hHHHHHHHHHhhCCCCcEEECCC
Confidence 55677788999999999999999999998542 1 13556789999999999999873
No 23
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=94.51 E-value=0.065 Score=44.25 Aligned_cols=69 Identities=12% Similarity=0.273 Sum_probs=46.3
Q ss_pred CCCccccCC---CCceEec--CCCceeeeccCCccc--ee-ccccc-CcCCceEEeecCc--eEEEeeecCCCCeeeEEe
Q 039248 286 FSRWSYGGD---GTPIRLM--DRSLCLKVVGDGLPP--ML-SNDCQ-SNQSAWSLVSSSK--LHLATKDDEHGGELLCLQ 354 (400)
Q Consensus 286 ~~~W~~~~~---~~~~~~~--~~~~cl~a~~~g~~~--~l-~~~c~-~~~~~w~~~s~~~--~~~~~~~~~~~~~~lcld 354 (400)
+|+|.++.. +....|+ .+++||.+.+.+... .+ ..+|. .++|+|++...+. ..+-.+ . +.+|||
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~----~-s~~~Ld 76 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNK----N-SGKVLD 76 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEET----S-TTEEEE
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEEC----C-CCcEEE
Confidence 467777662 2254444 589999999866433 44 67787 8899999988773 333322 2 679999
Q ss_pred ecCCC
Q 039248 355 ISIWT 359 (400)
Q Consensus 355 ~~~~~ 359 (400)
+.+..
T Consensus 77 v~~~~ 81 (105)
T PF14200_consen 77 VAGGS 81 (105)
T ss_dssp EGGGS
T ss_pred ECCCC
Confidence 97653
No 24
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=93.63 E-value=1.1 Score=44.65 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=43.7
Q ss_pred CeEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC--CChhhHHHHHHHHH
Q 039248 1 MVLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPR--QNEPDWYKYISEGA 78 (400)
Q Consensus 1 ~VILD~H~~~~~Wcc~~~dgn~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~--~~~~dW~~~~~~~~ 78 (400)
|||||+-... |+-+.... + ...+ ....+-...+...|++++|++||-.=||--... .......+++.|=+
T Consensus 94 Yvi~Dl~~p~----~sI~r~~P-~--~sw~-~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~ 165 (314)
T PF03198_consen 94 YVILDLNTPN----GSINRSDP-A--PSWN-TDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDM 165 (314)
T ss_dssp EEEEES-BTT----BS--TTS----------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHH
T ss_pred EEEEecCCCC----ccccCCCC-c--CCCC-HHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHH
Confidence 7999998752 23222111 1 1233 355667788999999999999999999975332 12344555555544
Q ss_pred HHHHhcCCCcEEEE
Q 039248 79 RVVHKRNPHVLVFV 92 (400)
Q Consensus 79 ~AIr~~nP~~lI~V 92 (400)
++-++..--+.|-|
T Consensus 166 K~Yi~~~~~R~IPV 179 (314)
T PF03198_consen 166 KAYIKSKGYRSIPV 179 (314)
T ss_dssp HHHHHHSSS----E
T ss_pred HHHHHhcCCCCCce
Confidence 44333333333444
No 25
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=91.79 E-value=6.4 Score=40.53 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCCC----C-----ChhhHHHHHHHHHHHHHhcCCCcEEEE-eCCCC
Q 039248 29 FDPNEWMKGLSFVADRFKEKR-QVVAISLRNELRGPR----Q-----NEPDWYKYISEGARVVHKRNPHVLVFV-SGLNF 97 (400)
Q Consensus 29 ~~~d~wi~~W~~lA~ryk~~p-~Vvg~DL~NEP~~~~----~-----~~~dW~~~~~~~~~AIr~~nP~~lI~V-eG~~~ 97 (400)
-..++|..++..++++|+..- +|--++.+|||.-.+ + +..+=.+++..+..++.+.+.+..|.+ |...|
T Consensus 151 d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~ 230 (384)
T PF14587_consen 151 DNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDW 230 (384)
T ss_dssp T-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSG
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhH
Confidence 345889999999999996543 366789999997543 1 223455677777888999998876666 44443
No 26
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.078 Score=54.24 Aligned_cols=103 Identities=29% Similarity=0.444 Sum_probs=69.0
Q ss_pred CCCeeeccCCC--c-eeeecCCCC---CCccc--cCCCCceEecCCCceeeecc--CCccceecccccCcCCceEEeecC
Q 039248 266 SGNCVNANARN--E-LYASNRGPF---SRWSY--GGDGTPIRLMDRSLCLKVVG--DGLPPMLSNDCQSNQSAWSLVSSS 335 (400)
Q Consensus 266 tg~c~~~~~~~--~-l~~~~c~~~---~~W~~--~~~~~~~~~~~~~~cl~a~~--~g~~~~l~~~c~~~~~~w~~~s~~ 335 (400)
.-+|++..+.+ + +.+++|-++ +.|.+ +... .+....+||.+.. .|.|++|. -|.....+|+.+-.+
T Consensus 440 g~~Cl~s~~~~~~~~~gl~~C~~s~~nqqwa~~~t~~~---~~~~~elCL~v~~~~pg~~v~l~-~C~~~e~~q~~v~~~ 515 (559)
T KOG3738|consen 440 GDNCLDSQGQNSQEALGLASCHGSGGNQQWAFLRTSTQ---LITHRELCLAVGSNTPGSPVALV-PCGNNETKQRWVELG 515 (559)
T ss_pred cchhhhhhhcccccCcceeecccCCCCcchhhhhhhhh---HHHHHhhhheeecCCCCCeEEEE-ecCCCCCceEEEecC
Confidence 34699877665 2 779999877 89999 4443 3347899998776 67887763 488666677666555
Q ss_pred ceEEEeeecCCCCeeeEEeecCCCccchhhHHHhhhhccccccc
Q 039248 336 KLHLATKDDEHGGELLCLQISIWTESLRFERAIQEKNLASQSLQ 379 (400)
Q Consensus 336 ~~~~~~~~~~~~~~~lcld~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (400)
. |+ ...+ +.||||......- -.+-+.-|.++.||+.|
T Consensus 516 ~-~l----~h~~-s~KOGd~~~~g~~-~l~~~~C~~~~~sQ~w~ 552 (559)
T KOG3738|consen 516 G-HL----LHAG-SHLCLDNPLKGRW-LLEVSTCESHLVSQSWQ 552 (559)
T ss_pred C-ch----hccc-ccceeccccCCCc-ceeecccccccccceee
Confidence 4 32 2233 8999998876651 12334456777787765
No 27
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=89.06 E-value=1.3 Score=43.64 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 27 RYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 27 ~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
..+++++....++.|++||+..|||| ..|-||=.........|. ++++.|++.+|..|+-+=.
T Consensus 124 ~~m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~gd~~~~~~~~~~w~----~~~~~i~~~dp~~L~T~H~ 186 (289)
T PF13204_consen 124 NIMPPENAERYGRYVVARYGAYPNVI-WILGGDYFDTEKTRADWD----AMARGIKENDPYQLITIHP 186 (289)
T ss_dssp TSS-HHHHHHHHHHHHHHHTT-SSEE-EEEESSS--TTSSHHHHH----HHHHHHHHH--SS-EEEEE
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCE-EEecCccCCCCcCHHHHH----HHHHHHHhhCCCCcEEEeC
Confidence 45889999999999999999999998 889999711112344554 4578999999988777744
No 28
>TIGR03356 BGL beta-galactosidase.
Probab=88.19 E-value=1.9 Score=44.97 Aligned_cols=81 Identities=11% Similarity=0.072 Sum_probs=52.1
Q ss_pred eEEecCCCC-CCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC-------------CCh
Q 039248 2 VLLDNHISK-PDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPR-------------QNE 67 (400)
Q Consensus 2 VILD~H~~~-~~Wcc~~~dgn~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~-------------~~~ 67 (400)
+|+++|+.. |.|-- +.+||.+.. ..+.|++.|+.+++||++.-.. ..++|||.... .+.
T Consensus 110 pivtL~Hfd~P~~l~---~~gGw~~~~--~~~~f~~ya~~~~~~~~d~v~~--w~t~NEp~~~~~~~y~~G~~~P~~~~~ 182 (427)
T TIGR03356 110 PFVTLYHWDLPQALE---DRGGWLNRD--TAEWFAEYAAVVAERLGDRVKH--WITLNEPWCSAFLGYGLGVHAPGLRDL 182 (427)
T ss_pred eEEeeccCCccHHHH---hcCCCCChH--HHHHHHHHHHHHHHHhCCcCCE--EEEecCcceecccchhhccCCCCCccH
Confidence 688887654 55431 125665533 4689999999999999996443 47999997321 010
Q ss_pred h-------hHHHHHHHHHHHHHhcCCCcE
Q 039248 68 P-------DWYKYISEGARVVHKRNPHVL 89 (400)
Q Consensus 68 ~-------dW~~~~~~~~~AIr~~nP~~l 89 (400)
. .-..+.-+++++||+..|+..
T Consensus 183 ~~~~~~~hnll~Aha~A~~~~~~~~~~~~ 211 (427)
T TIGR03356 183 RAALQAAHHLLLAHGLAVQALRANGPGAQ 211 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 1 112233467889999988744
No 29
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=1.1 Score=48.40 Aligned_cols=65 Identities=17% Similarity=0.306 Sum_probs=48.2
Q ss_pred CeeeccCCCceeeecC--CCCCCccccCCCCceEecCCCceeeeccCCccceec-ccccCcCCceEEee
Q 039248 268 NCVNANARNELYASNR--GPFSRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLS-NDCQSNQSAWSLVS 333 (400)
Q Consensus 268 ~c~~~~~~~~l~~~~c--~~~~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l~-~~c~~~~~~w~~~s 333 (400)
.|.++.....+.+.+| ..+|.|.|..++ .|.=+.+++||++...+..+.|. -+|+++.|+|.+..
T Consensus 507 ~cl~~~~~~~v~l~~C~~~~~q~w~~~~~~-~i~~~~sg~CL~~~~~~~~~~l~~c~~~~~~Q~W~~~~ 574 (578)
T KOG3736|consen 507 LCLDVDDAGKVTLYDCHKMGNQLWHYDKDG-TLYHRNSGKCLEAAVDKNGLILVACDPSDPTQQWLFEH 574 (578)
T ss_pred EEeccccCCceEEEecccccccceEEcCCC-ceEcCCCCccccccCCCCCceEeecCCCCCcceEEEEe
Confidence 6877642233899999 556899999985 77767899999999987765553 34446699998764
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=82.74 E-value=4.5 Score=40.70 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCC--ChhhHHH------HHHHHHHHHHhcCCCcEEEEe
Q 039248 32 NEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQ--NEPDWYK------YISEGARVVHKRNPHVLVFVS 93 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~--~~~dW~~------~~~~~~~AIr~~nP~~lI~Ve 93 (400)
+........+..|||+. |+.-|+.|||-.... ..+.|+. +++.+-..-|+++|+..+++-
T Consensus 125 ~~~e~hI~tV~~rYkg~--~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~N 192 (345)
T COG3693 125 KMVEEHIKTVVGRYKGS--VASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVIN 192 (345)
T ss_pred HHHHHHHHHHHHhccCc--eeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEee
Confidence 34455677899999998 888999999976321 1345664 677778888999999887763
No 31
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=80.79 E-value=2.2 Score=46.12 Aligned_cols=85 Identities=19% Similarity=0.328 Sum_probs=63.4
Q ss_pred CCCCCeeeccCC-----CceeeecCCCC---CCccccCCCCceEecCCCceeeeccCCcccee-ccccc-CcCCceEEee
Q 039248 264 PLSGNCVNANAR-----NELYASNRGPF---SRWSYGGDGTPIRLMDRSLCLKVVGDGLPPML-SNDCQ-SNQSAWSLVS 333 (400)
Q Consensus 264 p~tg~c~~~~~~-----~~l~~~~c~~~---~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l-~~~c~-~~~~~w~~~s 333 (400)
..|..|++.... ..+.+.+|.+. |-|+||.++ +|+. ...||...-.|. + =.+|. ..+|.|..-.
T Consensus 461 ~~~~~cld~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~-eir~--~~~cl~~~~~~~---v~l~~C~~~~~q~w~~~~ 534 (578)
T KOG3736|consen 461 GNPNLCLDTERAPAGQGMAVGLYPCHGPGGNQYFPYTKQG-EIRI--GDLCLDVDDAGK---VTLYDCHKMGNQLWHYDK 534 (578)
T ss_pred CCcchhhhhhchhccCCCcceEecCCCccccccccccCCc-ceEE--CCEEeccccCCc---eEEEecccccccceEEcC
Confidence 668899988752 24889999875 899999999 8877 339988764343 4 36796 3399999988
Q ss_pred cCceEEEeeecCCCCeeeEEeecCCCcc
Q 039248 334 SSKLHLATKDDEHGGELLCLQISIWTES 361 (400)
Q Consensus 334 ~~~~~~~~~~~~~~~~~lcld~~~~~~~ 361 (400)
++.+ .... +..||++....+.
T Consensus 535 ~~~i-~~~~------sg~CL~~~~~~~~ 555 (578)
T KOG3736|consen 535 DGTL-YHRN------SGKCLEAAVDKNG 555 (578)
T ss_pred CCce-EcCC------CCccccccCCCCC
Confidence 8443 4444 7899999988776
No 32
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=78.39 E-value=26 Score=34.52 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=78.1
Q ss_pred HHHHHh---cCCCcEEEEeccCCCCCC-CCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccchhhhcCCCcCCCCC
Q 039248 40 FVADRF---KEKRQVVAISLRNELRGP-RQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLRFLQKSPLALDLDN 115 (400)
Q Consensus 40 ~lA~ry---k~~p~Vvg~DL~NEP~~~-~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l~~~Pv~l~~~~ 115 (400)
++...| .+.+.|..+-+=||.--. .-...+.-.++.+.-.++.+++-+..|.- --.|- -+.++|.-....+
T Consensus 120 til~ay~~~~~~d~v~~v~VGnEal~r~~~tasql~~~I~~vrsav~~agy~gpV~T-~dsw~----~~~~np~l~~~SD 194 (305)
T COG5309 120 TILSAYLPYNGWDDVTTVTVGNEALNRNDLTASQLIEYIDDVRSAVKEAGYDGPVTT-VDSWN----VVINNPELCQASD 194 (305)
T ss_pred HHHHHHhccCCCCceEEEEechhhhhcCCCCHHHHHHHHHHHHHHHHhcCCCCceee-cccce----eeeCChHHhhhhh
Confidence 444545 456789999999996332 23466777777776667776665433211 00111 0111221111224
Q ss_pred cEEEEEeecCCCCCCCcccCCCCchhhhh-HHHHHHhhHHHHhhcCCCCCEEEeccCCCCCCCCh--------hhHHHHH
Q 039248 116 KLVYEIHWYSFSQDQNMWKTQPTNIVCYK-VTQSFINRAVFLTTRKNPAPLVLSEFGFDQREVNL--------ADNLYMT 186 (400)
Q Consensus 116 ~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~-~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~~~~~--------~d~~w~~ 186 (400)
-+.--+|.|--... ....-.. +...+++... +. -.+.+++|||-|.+.++... +...+++
T Consensus 195 fia~N~~aYwd~~~--------~a~~~~~f~~~q~e~vqs--a~-g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~ 263 (305)
T COG5309 195 FIAANAHAYWDGQT--------VANAAGTFLLEQLERVQS--AC-GTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQ 263 (305)
T ss_pred hhhcccchhccccc--------hhhhhhHHHHHHHHHHHH--hc-CCCccEEEeeccCCCCCCccCCcCCChhHHHHHHH
Confidence 45555666642111 1010111 1122333211 11 13399999999999886422 3468899
Q ss_pred HHHHHHHHCCCceE
Q 039248 187 CLMAYAAETDLDWA 200 (400)
Q Consensus 187 ~~l~~l~~~gi~wa 200 (400)
.++..|++.|++-+
T Consensus 264 ~i~~~~~~~G~d~f 277 (305)
T COG5309 264 EILNALRSCGYDVF 277 (305)
T ss_pred HHHhhhhccCccEE
Confidence 99999999999865
No 33
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=76.46 E-value=1.6 Score=43.98 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=16.0
Q ss_pred CCCCEEEeccCCCCCCC-ChhhHHHHHHH
Q 039248 161 NPAPLVLSEFGFDQREV-NLADNLYMTCL 188 (400)
Q Consensus 161 ~g~Pv~iGEFG~~~~~~-~~~d~~w~~~~ 188 (400)
.+.|++|||-|..+.+. +....+|+..|
T Consensus 284 p~~~~WlGEtg~Ay~gG~~~vSdtFv~~F 312 (319)
T PF03662_consen 284 PGKPVWLGETGSAYNGGAPGVSDTFVAGF 312 (319)
T ss_dssp H---EEEEEEEEESTT--TTTTTSTHHHH
T ss_pred CCCCeEEeCcccccCCCCCCccHHHHHHH
Confidence 46899999999987652 22234565555
No 34
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=75.48 E-value=57 Score=33.55 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhcCC-CcEEEEeccCCCCCCCC------ChhhHHHHHHHHHHHHHhcCCCcEEEE-eCCCCCccchh
Q 039248 32 NEWMKGLSFVADRFKEK-RQVVAISLRNELRGPRQ------NEPDWYKYISEGARVVHKRNPHVLVFV-SGLNFDLDLRF 103 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~-p~Vvg~DL~NEP~~~~~------~~~dW~~~~~~~~~AIr~~nP~~lI~V-eG~~~~~dLs~ 103 (400)
.+|.+++......+|++ -++.++.+-|||.-... ...+-.++|.+ -.+.++.+.-|+. |-..+--+++.
T Consensus 149 a~yA~~l~~fv~~m~~nGvnlyalSVQNEPd~~p~~d~~~wtpQe~~rF~~q---yl~si~~~~rV~~pes~~~~~~~~d 225 (433)
T COG5520 149 ADYADYLNDFVLEMKNNGVNLYALSVQNEPDYAPTYDWCWWTPQEELRFMRQ---YLASINAEMRVIIPESFKDLPNMSD 225 (433)
T ss_pred HHHHHHHHHHHHHHHhCCCceeEEeeccCCcccCCCCcccccHHHHHHHHHH---hhhhhccccEEecchhccccccccc
Confidence 46677777777777766 46889999999975421 12233344433 2233333433433 33322112111
Q ss_pred -hhcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCCCCChhhH
Q 039248 104 -LQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQREVNLADN 182 (400)
Q Consensus 104 -l~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~~~~~~d~ 182 (400)
+-+.|-. ..+=-+...|+|+-.++.++. ..+.+. ..+.-||++|.=....+++-.++
T Consensus 226 p~lnDp~a--~a~~~ilg~H~Ygg~v~~~p~-----------------~lak~~---~~gKdlwmte~y~~esd~~s~dr 283 (433)
T COG5520 226 PILNDPKA--LANMDILGTHLYGGQVSDQPY-----------------PLAKQK---PAGKDLWMTECYPPESDPNSADR 283 (433)
T ss_pred ccccCHhH--hcccceeEeeecccccccchh-----------------hHhhCC---CcCCceEEeecccCCCCCCcchH
Confidence 1112221 223448999999976654211 001111 23667999998777666544343
Q ss_pred HHHH---HHHHHHHHCCC-ceEEeccCccccccCCCCCCCCccccccCC
Q 039248 183 LYMT---CLMAYAAETDL-DWALWALQGSYYLRGGLKGAEETFGALDST 227 (400)
Q Consensus 183 ~w~~---~~l~~l~~~gi-~wa~Wa~~Gsyy~r~g~~~~~et~Gll~~d 227 (400)
..+. .++.-+-+-|+ ++.+|.+..+| .+..+..|+..+.
T Consensus 284 ~~~~~~~hi~~gm~~gg~~ayv~W~i~~~~------~~~~~~gg~~k~~ 326 (433)
T COG5520 284 EALHVALHIHIGMTEGGFQAYVWWNIRLDY------GGGPNHGGNSKRG 326 (433)
T ss_pred HHHHHHHHHHhhccccCccEEEEEEEeecc------CCCcCCCcccccc
Confidence 2332 22333333344 46788877554 3344566666443
No 35
>PF02156 Glyco_hydro_26: Glycosyl hydrolase family 26; InterPro: IPR022790 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 26 GH26 from CAZY encompasses mainly mannan endo-1,4-beta-mannosidases (3.2.1.78 from EC). Mannan endo-1,4-beta-mannosidase hydrolyses mannan and galactomannan, but displays little activity towards other plant cell wall polysaccharides []. The enzyme randomly hydrolyses 1,4-beta-D-linkages in mannans, galacto-mannans, glucomannans and galactoglucomannans. This entry also incoporates the enzyme Endogluconase H 3.2.1.4 from EC catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans. ; GO: 0008810 cellulase activity, 0016985 mannan endo-1,4-beta-mannosidase activity, 0006080 substituted mannan metabolic process; PDB: 2QHA_A 3CBW_A 2WHK_A 2VI0_A 2BVD_A 2BV9_A 2CIT_A 2V3G_A 2CIP_A 2X2Y_B ....
Probab=73.48 E-value=59 Score=32.61 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccchhhhcCCCcCCCCCcE
Q 039248 38 LSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLRFLQKSPLALDLDNKL 117 (400)
Q Consensus 38 W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l~~~Pv~l~~~~~l 117 (400)
...|-+.-..+|.|+|+|++++-.........=...++++++..+ .| .=+
T Consensus 42 ~~~v~~~tG~yPAv~G~D~~~~~~~~~~~~~~~~~~~~~a~~~~~----------~G--------------------gIv 91 (311)
T PF02156_consen 42 RSDVKDVTGKYPAVRGFDFGFWYSPSNNADGVDFDIIEEAIEWWK----------RG--------------------GIV 91 (311)
T ss_dssp HHHHHHHHSS-BSEEEEEEEETSCCSSGGGGBCHTTHHHHHHHHH----------TT---------------------EE
T ss_pred HHHHHHHhCCCCeEEEeecccccCCccccccCchHHHHHHHHHHH----------CC--------------------CEE
Q ss_pred EEEEeecCCCCCCC-cccCC------------CCchhhhhHHHHHHhhHHHHhh-cCCCCCEEE-------eccCCCCCC
Q 039248 118 VYEIHWYSFSQDQN-MWKTQ------------PTNIVCYKVTQSFINRAVFLTT-RKNPAPLVL-------SEFGFDQRE 176 (400)
Q Consensus 118 VYs~H~Y~ps~~~~-~W~~~------------~~~~~~~~~~~~~~~~~gfl~~-~~~g~Pv~i-------GEFG~~~~~ 176 (400)
-++.|++.|..... .|... .+...+..+...++....+|.+ ++.++||++ |.|=.--..
T Consensus 92 T~sWH~~~P~~~~~~~f~~~~t~~~~~~~l~~~~t~~~~~~~~~ld~iA~~l~~l~~~~vPVl~Rp~HE~nG~WfwWg~~ 171 (311)
T PF02156_consen 92 TFSWHWNNPSTGGGSAFYTEATTFDISKILTGGPTAEYEAFKADLDRIADFLKQLKDAGVPVLFRPFHEMNGGWFWWGAK 171 (311)
T ss_dssp EEEEE--BTTTSSS-STTSTSTCHHHHHHCCTTTSHCHHHHHHHHHHHHHHHHHHHCTTS-EEEEESTSTTSSSSTTSTT
T ss_pred EEEecCCCCCCCCccccccCCCHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeehhhcCCCccccCCC
Q ss_pred C---ChhhHHHHHHHHHHHHH-CCCceEEeccCc
Q 039248 177 V---NLADNLYMTCLMAYAAE-TDLDWALWALQG 206 (400)
Q Consensus 177 ~---~~~d~~w~~~~l~~l~~-~gi~wa~Wa~~G 206 (400)
. ...-.+..+.+.++|++ +++.-..|.+++
T Consensus 172 ~~~~~~~y~~lwr~~~~~l~~~~g~~Nliwvw~~ 205 (311)
T PF02156_consen 172 GHCTPEQYKALWRHMVDYLRNVKGLHNLIWVWSP 205 (311)
T ss_dssp STCHHHHHHHHHHHHHHHHHTTST-TSEEEEE-E
T ss_pred CCCCHHHHHHHHHHHHHHHHhccCCceEEEEecC
No 36
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.41 E-value=10 Score=40.23 Aligned_cols=64 Identities=13% Similarity=0.078 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Q 039248 35 MKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFD 98 (400)
Q Consensus 35 i~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~ 98 (400)
-.+++.+.+.|.+..|+.+.|.+||--.+.....--...+..+.++++++|++.+=++.|=.+.
T Consensus 223 s~Flr~~~kefG~~tniy~~DpFNE~~Pp~sepey~~staaAiyesm~kvdknaVWllQgWlF~ 286 (666)
T KOG2233|consen 223 STFLRHQIKEFGGVTNIYSADPFNEILPPESEPEYVKSTAAAIYESMKKVDKNAVWLLQGWLFT 286 (666)
T ss_pred HHHHHHHHHHhCCcccccccCcccccCCCCCChHHHHHHHHHHHHHHhccCcceEEeeecceee
Confidence 4578899999999999999999999777654333344455667788999999999888885543
No 37
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=65.88 E-value=20 Score=34.64 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhcCC---CcEEEEeccCCCCCC----------CCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCC
Q 039248 32 NEWMKGLSFVADRFKEK---RQVVAISLRNELRGP----------RQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFD 98 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~---p~Vvg~DL~NEP~~~----------~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~ 98 (400)
++|+ ..|-++|... ..|-+|.|=|||-.= .-+..+...-..+.++||++++|...|+ +...|+
T Consensus 107 ~ewV---~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~TH~dVHP~~~t~~El~~r~i~~AkaiK~~DP~a~v~-GP~~wg 182 (239)
T PF12891_consen 107 DEWV---NYLVNKYGNASTNGGVKYYSLDNEPDLWHSTHRDVHPEPVTYDELRDRSIEYAKAIKAADPDAKVF-GPVEWG 182 (239)
T ss_dssp HHHH---HHHHHHH--TTSTTS--EEEESS-GGGHHHHTTTT--S---HHHHHHHHHHHHHHHHHH-TTSEEE-EEEE-S
T ss_pred HHHH---HHHHHHHhccccCCCceEEEecCchHhhcccccccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEe-echhhc
Confidence 4554 3456667544 458899999999521 1134566666667889999999998765 444554
No 38
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=63.89 E-value=83 Score=33.66 Aligned_cols=149 Identities=16% Similarity=0.192 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhcCCC-cEEEEeccCCCCCC------CC----ChhhHHHHHHH-HHHHHHhcCC--CcEEEE-eCCC
Q 039248 32 NEWMKGLSFVADRFKEKR-QVVAISLRNELRGP------RQ----NEPDWYKYISE-GARVVHKRNP--HVLVFV-SGLN 96 (400)
Q Consensus 32 d~wi~~W~~lA~ryk~~p-~Vvg~DL~NEP~~~------~~----~~~dW~~~~~~-~~~AIr~~nP--~~lI~V-eG~~ 96 (400)
+.|.+.+.+..+.|+.+- +|-++-+-|||... .. +..+-..++.. +..++++.++ +.-|++ +- +
T Consensus 204 ~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~-n 282 (496)
T PF02055_consen 204 QAYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDH-N 282 (496)
T ss_dssp HHHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEE-E
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEec-C
Confidence 578888889999997653 48899999999742 11 11122233333 6779999987 665554 42 2
Q ss_pred CCccchh---hhcCCCcCCCCCc-EEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCC
Q 039248 97 FDLDLRF---LQKSPLALDLDNK-LVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGF 172 (400)
Q Consensus 97 ~~~dLs~---l~~~Pv~l~~~~~-lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~ 172 (400)
+...... +...|-. .+. -..++|+|.-.... ..+.. ..+ . --...++.+|-..
T Consensus 283 ~~~~~~~~~~il~d~~A---~~yv~GiA~HwY~g~~~~------------~~l~~-~h~--~-----~P~k~l~~TE~~~ 339 (496)
T PF02055_consen 283 RDNLPDYADTILNDPEA---AKYVDGIAFHWYGGDPSP------------QALDQ-VHN--K-----FPDKFLLFTEACC 339 (496)
T ss_dssp GGGTTHHHHHHHTSHHH---HTTEEEEEEEETTCS-HC------------HHHHH-HHH--H-----STTSEEEEEEEES
T ss_pred CcccchhhhhhhcChhh---HhheeEEEEECCCCCchh------------hHHHH-HHH--H-----CCCcEEEeecccc
Confidence 2211111 1111100 011 26899999842211 11111 111 1 1246689988644
Q ss_pred CCCCCC----h----hhHHHHHHHHHHHHHCCCceEEecc
Q 039248 173 DQREVN----L----ADNLYMTCLMAYAAETDLDWALWAL 204 (400)
Q Consensus 173 ~~~~~~----~----~d~~w~~~~l~~l~~~gi~wa~Wa~ 204 (400)
.....+ . ...+|...++..+..---+|..|.+
T Consensus 340 g~~~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~gw~~WNl 379 (496)
T PF02055_consen 340 GSWNWDTSVDLGSWDRAERYAHDIIGDLNNWVSGWIDWNL 379 (496)
T ss_dssp S-STTS-SS-TTHHHHHHHHHHHHHHHHHTTEEEEEEEES
T ss_pred CCCCcccccccccHHHHHHHHHHHHHHHHhhceeeeeeee
Confidence 332111 1 1135667777777654457999987
No 39
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=62.33 E-value=22 Score=36.00 Aligned_cols=59 Identities=10% Similarity=0.028 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 35 MKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 35 i~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
..+.+...+.|. ..++.+.|++||-..+...........+++.+++.++||+.+=++.|
T Consensus 160 ~~F~~~q~~~yG-~~~~Y~~D~FnE~~p~~~~~~~l~~~s~~v~~am~~~dp~AvWvmQg 218 (333)
T PF05089_consen 160 KLFYEEQIKLYG-TDHIYAADPFNEGGPPSGDPEYLANVSKAVYKAMQAADPDAVWVMQG 218 (333)
T ss_dssp HHHHHHHHHHH----SEEE--TTTTS---TTS---HHHHHHHHHHHHHHH-TT-EEEEEE
T ss_pred HHHHHHHHHhcC-CCceeCCCccCCCCCCCCchHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 446777777886 88899999999965554333457788888999999999998888887
No 40
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=61.88 E-value=46 Score=32.94 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred eEEecCCCCCCcccCCCCCCCCCCCCCCCHHHHHHHHHHHHH--HhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHH
Q 039248 2 VLLDNHISKPDWCCSNTDGNGFFGDRYFDPNEWMKGLSFVAD--RFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGAR 79 (400)
Q Consensus 2 VILD~H~~~~~Wcc~~~dgn~~~~d~~~~~d~wi~~W~~lA~--ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~ 79 (400)
|++-||+-.+. |.-....++.+.++.+-+.+ .......|+ .|...+.. =.+.+-+.+.
T Consensus 37 V~fSnHtgyg~-----------~~g~v~~~e~l~~~l~~l~~~~~~~~~davl--------tGYlgs~~-qv~~i~~~v~ 96 (281)
T COG2240 37 VQFSNHTGYGK-----------WTGIVMPPEQLADLLNGLEAIDKLGECDAVL--------TGYLGSAE-QVRAIAGIVK 96 (281)
T ss_pred EEecCCCCCCC-----------CCCcCCCHHHHHHHHHHHHhcccccccCEEE--------EccCCCHH-HHHHHHHHHH
Confidence 56777765443 22233667788888888877 556677776 44444333 2445667789
Q ss_pred HHHhcCCCcEEEEeCCCCCcc
Q 039248 80 VVHKRNPHVLVFVSGLNFDLD 100 (400)
Q Consensus 80 AIr~~nP~~lI~VeG~~~~~d 100 (400)
+||+.+|+.+++++++--+.+
T Consensus 97 ~vk~~~P~~~~l~DPVMGD~g 117 (281)
T COG2240 97 AVKEANPNALYLCDPVMGDPG 117 (281)
T ss_pred HHhccCCCeEEEeCCcccCCC
Confidence 999999999999999876543
No 41
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=60.43 E-value=28 Score=29.41 Aligned_cols=41 Identities=34% Similarity=0.382 Sum_probs=32.2
Q ss_pred CCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 039248 47 EKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNF 97 (400)
Q Consensus 47 ~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~ 97 (400)
..|.+|||..+.. +.. .+.+.++.||+..|+..|+++|..-
T Consensus 38 ~~pdiv~~S~~~~---------~~~-~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 38 LKPDVVGISLMTS---------AIY-EALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred cCCCEEEEeeccc---------cHH-HHHHHHHHHHHHCCCCEEEECCcch
Confidence 6889999997533 112 5677889999999999999999653
No 42
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=57.62 E-value=36 Score=28.09 Aligned_cols=43 Identities=28% Similarity=0.382 Sum_probs=32.2
Q ss_pred cCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 039248 46 KEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNF 97 (400)
Q Consensus 46 k~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~ 97 (400)
+.+|.+|++.....+. ...+.+.++.+++.+|+..|+++|..-
T Consensus 49 ~~~pd~V~iS~~~~~~---------~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 49 AERPDVVGISVSMTPN---------LPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HTTCSEEEEEESSSTH---------HHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred cCCCcEEEEEccCcCc---------HHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 3478888888763322 234567788899999999999999764
No 43
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=18 Score=37.55 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=50.6
Q ss_pred CCCCCeeeccCCC---ceeeecCCCC-CCccccCCCCceEecCCCceeeeccCCccceecccccCc--CCceEEee
Q 039248 264 PLSGNCVNANARN---ELYASNRGPF-SRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLSNDCQSN--QSAWSLVS 333 (400)
Q Consensus 264 p~tg~c~~~~~~~---~l~~~~c~~~-~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l~~~c~~~--~~~w~~~s 333 (400)
...++|+.+.+.. .+.+-.|..+ ++|...-.++.|.-.++.+||+..-.|.-......|.+. .|+|++..
T Consensus 480 ~~~elCL~v~~~~pg~~v~l~~C~~~e~~q~~v~~~~~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~ 555 (559)
T KOG3738|consen 480 THRELCLAVGSNTPGSPVALVPCGNNETKQRWVELGGHLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSWQFAL 555 (559)
T ss_pred HHHhhhheeecCCCCCeEEEEecCCCCCceEEEecCCchhcccccceeccccCCCcceeecccccccccceeeeeh
Confidence 5568999997643 4899999988 344444444467666889999988888755556789855 48898764
No 44
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=42.74 E-value=50 Score=27.43 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC-CcEEEEeCCCCCc
Q 039248 29 FDPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNP-HVLVFVSGLNFDL 99 (400)
Q Consensus 29 ~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP-~~lI~VeG~~~~~ 99 (400)
.+++++++. +. ...|.+|++...++.+. ..+.+.++++|+..| +..|+++|.-...
T Consensus 37 ~~~~~l~~~----~~--~~~pdvV~iS~~~~~~~---------~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 37 VPPEEIVEA----AK--EEDADAIGLSGLLTTHM---------TLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred CCHHHHHHH----HH--HcCCCEEEEeccccccH---------HHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 555555443 22 34788898988766543 456777899999999 9999999976543
No 45
>PRK10673 acyl-CoA esterase; Provisional
Probab=38.79 E-value=1.2e+02 Score=27.81 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCCCC--ChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccch
Q 039248 37 GLSFVADRFKEKRQVVAISLRNELRGPRQ--NEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLR 102 (400)
Q Consensus 37 ~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~--~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs 102 (400)
.|..++.++...-.|+.+|++. +|... ...++...++.+.+.|.+.+.+.+++| |-++|+-+.
T Consensus 31 ~~~~~~~~l~~~~~vi~~D~~G--~G~s~~~~~~~~~~~~~d~~~~l~~l~~~~~~lv-GhS~Gg~va 95 (255)
T PRK10673 31 NLGVLARDLVNDHDIIQVDMRN--HGLSPRDPVMNYPAMAQDLLDTLDALQIEKATFI-GHSMGGKAV 95 (255)
T ss_pred HHHHHHHHHhhCCeEEEECCCC--CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE-EECHHHHHH
Confidence 4667777776667899999986 22111 122456666777777777776665555 777776443
No 46
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=37.37 E-value=1.1e+02 Score=26.35 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCCCC---CChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCc
Q 039248 38 LSFVADRFKEKRQVVAISLRNELRGPR---QNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDL 99 (400)
Q Consensus 38 W~~lA~ryk~~p~Vvg~DL~NEP~~~~---~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~ 99 (400)
|..++++++..-.|+.+|+..--.... .....+...++.+.+.|++.+.+.+++| |.++|+
T Consensus 14 ~~~~~~~l~~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lv-G~S~Gg 77 (228)
T PF12697_consen 14 WDPLAEALARGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILV-GHSMGG 77 (228)
T ss_dssp GHHHHHHHHTTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEE-EETHHH
T ss_pred HHHHHHHHhCCCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccc-cccccc
Confidence 444555555566799999986322111 0134577777788888888887666665 555554
No 47
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=34.65 E-value=71 Score=33.02 Aligned_cols=55 Identities=24% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 38 LSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 38 W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
|+.|++..+....+|.+- --++...-..-=..-++++++.||+++|+.+|||+.-
T Consensus 144 ~~~i~~~~~~~tk~v~IQ---RSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVDNC 198 (403)
T PF06838_consen 144 WEAIKKALKPNTKMVLIQ---RSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVDNC 198 (403)
T ss_dssp HHHHHHHHHTTEEEEEEE----S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE-T
T ss_pred HHHHHHhhccCceEEEEe---cCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 778888888777676332 2233311111113467788999999999999999853
No 48
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=34.45 E-value=41 Score=35.30 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCCCC-------------CChhh-------HHHHHHHHHHHHHhcCCCcE
Q 039248 30 DPNEWMKGLSFVADRFKEKRQVVAISLRNELRGPR-------------QNEPD-------WYKYISEGARVVHKRNPHVL 89 (400)
Q Consensus 30 ~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~-------------~~~~d-------W~~~~~~~~~AIr~~nP~~l 89 (400)
.++.|.+.=+.++++|++.=.. .=.+|||.... .+... -..+.-+|.++||+..|+.-
T Consensus 139 ~~~~F~~Ya~~~~~~~gd~V~~--w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~~~ 216 (455)
T PF00232_consen 139 TVDWFARYAEFVFERFGDRVKY--WITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPDGK 216 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTTBSE--EEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCTSE
T ss_pred HHHHHHHHHHHHHHHhCCCcce--EEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccceE
Confidence 4789999999999999985332 34689997320 11111 22333477889999999866
Q ss_pred EEE
Q 039248 90 VFV 92 (400)
Q Consensus 90 I~V 92 (400)
|-+
T Consensus 217 IGi 219 (455)
T PF00232_consen 217 IGI 219 (455)
T ss_dssp EEE
T ss_pred Eec
Confidence 643
No 49
>PRK00865 glutamate racemase; Provisional
Probab=30.47 E-value=2e+02 Score=27.68 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 37 GLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 37 ~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
.++.|.+++.+..-+...|..|=|.|..+ ..+-..++.++++.+.+.+.+.+|+---
T Consensus 20 vl~~i~~~lp~~~~iY~~D~~~~PYG~ks-~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 20 VLREIRRLLPDEHIIYVGDTARFPYGEKS-EEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHHHCCCCCEEEEecCCCCCCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 67889999999888999999999999864 6688889999999999999987666543
No 50
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.66 E-value=31 Score=35.84 Aligned_cols=92 Identities=15% Similarity=0.243 Sum_probs=62.8
Q ss_pred eecCCCCCeeeccCCC---ceeeecCCCC---CCccccCCCCceEecCCCceeeeccCCccceecccccC--cCCceEEe
Q 039248 261 IFHPLSGNCVNANARN---ELYASNRGPF---SRWSYGGDGTPIRLMDRSLCLKVVGDGLPPMLSNDCQS--NQSAWSLV 332 (400)
Q Consensus 261 ~~~p~tg~c~~~~~~~---~l~~~~c~~~---~~W~~~~~~~~~~~~~~~~cl~a~~~g~~~~l~~~c~~--~~~~w~~~ 332 (400)
+..+.|+.|++.-+.. -..+++|-.. |--..+.+| .|+....||.|.|.+-. .+.|.. -+-.|+-.
T Consensus 484 ~R~~at~~ClDsMG~~p~g~mglt~CHg~GgNQL~RlN~ag---Ql~qge~CltAdg~~i~---~~hC~lgtv~g~WqY~ 557 (603)
T KOG3737|consen 484 IRGFATAYCLDSMGKTPGGFMGLTPCHGMGGNQLFRLNEAG---QLMQGEQCLTADGSKIM---ITHCNLGTVKGEWQYF 557 (603)
T ss_pred ccCcccchhHHhcCCCCCCccccccccCCCCceEEEecccc---chhccceeeecCCceEE---EEEeecccccCceehh
Confidence 4558999999986553 2789999654 566666666 34457789999987643 455662 24468887
Q ss_pred ecCceEEEeeecCCCCeeeEEeecCCCccchh
Q 039248 333 SSSKLHLATKDDEHGGELLCLQISIWTESLRF 364 (400)
Q Consensus 333 s~~~~~~~~~~~~~~~~~lcld~~~~~~~~~~ 364 (400)
-..|-..-.. +..|||+......|+.
T Consensus 558 ~~tk~~~H~~------~~kC~~~se~~~qv~l 583 (603)
T KOG3737|consen 558 KNTKRFTHIP------SGKCLDRSEVLHQVFL 583 (603)
T ss_pred hcchheeecc------ccccccccchhheeee
Confidence 7776322223 5789999888776654
No 51
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=28.70 E-value=1.4e+02 Score=31.63 Aligned_cols=69 Identities=14% Similarity=0.248 Sum_probs=40.3
Q ss_pred CCCCCEEEeccCCCCCCC--------ChhhHHHHHHHHHHHHH---CC---CceEEeccCccccccCCCCCCCCcccccc
Q 039248 160 KNPAPLVLSEFGFDQREV--------NLADNLYMTCLMAYAAE---TD---LDWALWALQGSYYLRGGLKGAEETFGALD 225 (400)
Q Consensus 160 ~~g~Pv~iGEFG~~~~~~--------~~~d~~w~~~~l~~l~~---~g---i~wa~Wa~~Gsyy~r~g~~~~~et~Gll~ 225 (400)
+.+.|++|+|-|....+. +.....|++.-+..+.+ .| .|+++|++---|--..| ....-|||+-
T Consensus 363 ~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G--~y~~RfGLv~ 440 (474)
T PRK09852 363 RYQKPLFLVENGLGAKDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTG--EMSKRYGFVY 440 (474)
T ss_pred hcCCCEEEeCCCCCCCCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCC--CccceeeeEE
Confidence 577899999999874321 11223566555554433 45 47899998532211111 0234589987
Q ss_pred CCCCC
Q 039248 226 STWQH 230 (400)
Q Consensus 226 ~dW~t 230 (400)
=|..+
T Consensus 441 VD~~~ 445 (474)
T PRK09852 441 VDRDD 445 (474)
T ss_pred ECCCC
Confidence 77764
No 52
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=27.09 E-value=1.6e+02 Score=31.19 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=27.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCCC
Q 039248 21 NGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELRG 62 (400)
Q Consensus 21 n~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~ 62 (400)
+||-+.. ..+.|.+.=+.++++|++.. -.=.+|||..
T Consensus 126 GGW~n~~--~v~~F~~YA~~~f~~fgdVk---~WiT~NEP~~ 162 (467)
T TIGR01233 126 GDFLNRE--NIEHFIDYAAFCFEEFPEVN---YWTTFNEIGP 162 (467)
T ss_pred CCCCCHH--HHHHHHHHHHHHHHHhCCCC---EEEEecchhh
Confidence 5655543 56899999999999998533 3457999973
No 53
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=27.06 E-value=95 Score=29.99 Aligned_cols=64 Identities=19% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhcC---CCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcC
Q 039248 18 TDGNGFFGDRYFDPNEWMKGLSFVADRFKE---KRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRN 85 (400)
Q Consensus 18 ~dgn~~~~d~~~~~d~wi~~W~~lA~ryk~---~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~n 85 (400)
..|..||.|...+ -+|+.-+..|..||-. .|+- ..-|+|.-.+...-.=+.-.+++.+-||++|
T Consensus 156 iTGGpWFtD~elD-vEfi~~ll~ii~rf~~~n~fp~k---n~~~gpnv~~~P~y~~ypT~~~I~n~vr~~n 222 (301)
T COG5111 156 ITGGPWFTDNELD-VEFIARLLEIIERFLEKNLFPRK---NFEEGPNVFYAPKYEDYPTLEDIMNYVRNVN 222 (301)
T ss_pred ccCCCccccCccc-HHHHHHHHHHHHHHHHhccCCcc---chhcCCccccCCccCCCccHHHHHHHHHhce
Confidence 4688999999887 4677777888888832 2331 1124442211100011234567777888775
No 54
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=26.96 E-value=80 Score=31.96 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 68 PDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 68 ~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
......++++++.|++..|+++|||+.-
T Consensus 69 ~~~~~a~~~~~~~i~~~~PDvlVIispD 96 (328)
T cd07366 69 ARCQAALDRLADFIRAARIDVAVIVGDD 96 (328)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEcCc
Confidence 3566889999999999999999999873
No 55
>PF02312 CBF_beta: Core binding factor beta subunit; InterPro: IPR003417 Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including Murine leukemia virus, Polyomavirus enhancer, T-cell receptor enhancers etc. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold []. Also included in this family are the Drosophila melanogaster brother and big brother proteins, which regulate the DNA-binding properties of Runt.; GO: 0003713 transcription coactivator activity, 0005634 nucleus; PDB: 2JHB_A 1IO4_D 1ILF_A 1CL3_A 1H9D_B 1E50_H.
Probab=26.65 E-value=49 Score=30.23 Aligned_cols=58 Identities=28% Similarity=0.471 Sum_probs=23.9
Q ss_pred CceEEEeeecCCCCeeeEEeecCCCc----------cchhhHHHhhhhcccccccCcc-eecchhhhhhhcc
Q 039248 335 SKLHLATKDDEHGGELLCLQISIWTE----------SLRFERAIQEKNLASQSLQGPI-QIQDWADRQRAHY 395 (400)
Q Consensus 335 ~~~~~~~~~~~~~~~~lcld~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 395 (400)
+|+|+.+.+.=|| +|+=..++-+ -+.+|||-+|.-++.+.++--- .+.++.++||.|-
T Consensus 88 GKV~l~s~fIlNG---VCV~~rGwidlerLdG~g~LefDeerA~~Ed~~~~~~~e~~~~r~refee~~r~~~ 156 (169)
T PF02312_consen 88 GKVHLKSPFILNG---VCVRWRGWIDLERLDGVGCLEFDEERAQIEDALLREQFEQYNQRIREFEERQRGHR 156 (169)
T ss_dssp TCEEEEEEEEETT---EEEEEEEEEETTTTEEEEEEEE-HHHHHHHHHHCT---------------------
T ss_pred cceEeecceeEee---EEEEEEEEeehhhccCcceeeeCHHHHHHHHHHHHHHHHHHHhhccchhhccccCc
Confidence 5667665534444 6654444433 3568999999998888776543 3678888998874
No 56
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=26.30 E-value=2.9e+02 Score=26.91 Aligned_cols=69 Identities=17% Similarity=0.138 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEeccCCCC--CC--CCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccch
Q 039248 33 EWMKGLSFVADRFKE-KRQVVAISLRNELR--GP--RQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLR 102 (400)
Q Consensus 33 ~wi~~W~~lA~ryk~-~p~Vvg~DL~NEP~--~~--~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs 102 (400)
.+.++|..+|+++.. .-+|+.+|+.---. +. ......|...+..+++.+++.+.+. |+|=|...|.-+.
T Consensus 40 ~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~-v~LvG~SmGG~vA 113 (266)
T TIGR03101 40 KSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPP-VTLWGLRLGALLA 113 (266)
T ss_pred chhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCC-EEEEEECHHHHHH
Confidence 456789999999964 45788999975211 11 1123456666666777777765443 5555677765443
No 57
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.06 E-value=1.7e+02 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=34.2
Q ss_pred cCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCC--CcEEEEeCCCCCc
Q 039248 46 KEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNP--HVLVFVSGLNFDL 99 (400)
Q Consensus 46 k~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP--~~lI~VeG~~~~~ 99 (400)
+..|.+|++...+..+- ..+.+.++++|+..| +..|+|+|.-...
T Consensus 131 ~~~~d~v~lS~~~~~~~---------~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~ 177 (201)
T cd02070 131 EHKPDILGLSALMTTTM---------GGMKEVIEALKEAGLRDKVKVMVGGAPVNQ 177 (201)
T ss_pred HcCCCEEEEeccccccH---------HHHHHHHHHHHHCCCCcCCeEEEECCcCCH
Confidence 34777888888766553 346788999999988 8999999976543
No 58
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=25.65 E-value=85 Score=31.86 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 039248 67 EPDWYKYISEGARVVHKRNPHVLVFVSGLN 96 (400)
Q Consensus 67 ~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~ 96 (400)
.......++++.+.|++.+|+++|+|+.-.
T Consensus 70 ~~~~~~a~~~~~~~i~~~~PDvlViispdh 99 (335)
T PRK13363 70 HAACEAAIERMRDAIEAARIDVAVIVGNDQ 99 (335)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 346778999999999999999999998744
No 59
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=25.51 E-value=54 Score=29.41 Aligned_cols=59 Identities=17% Similarity=0.412 Sum_probs=32.4
Q ss_pred CCCceeeeccCCccceecccccCc--CCceEEeecCc--eEEEeeecCCCCeeeEEeecCCCc-----cchhhHH
Q 039248 302 DRSLCLKVVGDGLPPMLSNDCQSN--QSAWSLVSSSK--LHLATKDDEHGGELLCLQISIWTE-----SLRFERA 367 (400)
Q Consensus 302 ~~~~cl~a~~~g~~~~l~~~c~~~--~~~w~~~s~~~--~~~~~~~~~~~~~~lcld~~~~~~-----~~~~~~~ 367 (400)
.+..||.+.+.|.-.. ..|... .+.|+++--++ +.+-. -+ +..||.+...+. +++.++.
T Consensus 60 ~~~~CL~~~~~G~~~~--~~C~~~~~~q~F~iiPtttgAVQIks----~~-~~~Cl~~~~~~~~~~~~~i~l~~C 127 (150)
T PF03498_consen 60 KTGTCLAAYGNGVFHY--KSCDQDNLEQVFSIIPTTTGAVQIKS----LS-TGECLQTFNNSRTPIYYSIGLTPC 127 (150)
T ss_dssp TTSEEEEEETTCEEEE----TTTCHGHH-EEEEEBTTS-EEEEE----TT-T--EEEE-STTSS-SSEEEEEE--
T ss_pred CCCcceeecCCCeEee--cccCCCChhceEEEEEcCCCcEEEEe----cC-CCceEEecCCCceeEEeeEEeeeC
Confidence 3556998888875432 228844 48999886554 33222 22 679999988776 5555555
No 60
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=25.28 E-value=53 Score=29.96 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=50.2
Q ss_pred HHHHHHHhcCC-CcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCCCccchhh
Q 039248 38 LSFVADRFKEK-RQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNFDLDLRFL 104 (400)
Q Consensus 38 W~~lA~ryk~~-p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~~~dLs~l 104 (400)
...||+..++. -.|+|++.-...... ....++...+.+-+++|++..|+-.+++-|-.+|+-+..-
T Consensus 16 y~~la~~l~~~~~~v~~i~~~~~~~~~-~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E 82 (229)
T PF00975_consen 16 YRPLARALPDDVIGVYGIEYPGRGDDE-PPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFE 82 (229)
T ss_dssp GHHHHHHHTTTEEEEEEECSTTSCTTS-HEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEEEEecCCCCCCC-CCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHH
Confidence 46799999997 888888877664221 1234678888888999999999988888898888766543
No 61
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=24.85 E-value=1e+02 Score=30.68 Aligned_cols=30 Identities=13% Similarity=-0.006 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 039248 67 EPDWYKYISEGARVVHKRNPHVLVFVSGLN 96 (400)
Q Consensus 67 ~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~ 96 (400)
+....+.++++.+.|++..|+.+|+++.-.
T Consensus 32 ~~~~~~a~~~~~~~i~~~~Pd~IVViSpHw 61 (294)
T cd07372 32 WEQLRWAYERARESIEALKPDVLLVHSPHW 61 (294)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 345678899999999999999999999764
No 62
>PLN02899 alpha-galactosidase
Probab=24.12 E-value=55 Score=35.89 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=52.1
Q ss_pred CCceeeeccCCccc----eec--cccc-CcCCceEEeecCceEEEeeecCCCCeeeEEeecCCCccc-----hh------
Q 039248 303 RSLCLKVVGDGLPP----MLS--NDCQ-SNQSAWSLVSSSKLHLATKDDEHGGELLCLQISIWTESL-----RF------ 364 (400)
Q Consensus 303 ~~~cl~a~~~g~~~----~l~--~~c~-~~~~~w~~~s~~~~~~~~~~~~~~~~~lcld~~~~~~~~-----~~------ 364 (400)
..+||+|-+..+.. +.+ -.|. .++|-|++..+++|+-+ - ++||--|+.....+ |-
T Consensus 486 ~~~c~~~~~~~~~~~~~~~~~~fs~c~~~~~q~w~l~~~g~l~~~-~------sglca~v~~~~~~~~~~~~r~w~a~g~ 558 (633)
T PLN02899 486 GELCLDASPKQKRTSKDFRSGSFSPCRWDANQMWELNNNGTLISS-Y------SGLCATVNSVVAEVATGGVRSWIATGR 558 (633)
T ss_pred cChhhccCCCCCcCHhHhhccccCCCCCChhhceeeCCCCCEecC-c------cccceEeeccccccccCceeEEEEcCC
Confidence 34577776654333 332 4498 88999999999999544 3 69999998665554 21
Q ss_pred --hHHHhhhhcccccccCcceecchhhhh
Q 039248 365 --ERAIQEKNLASQSLQGPIQIQDWADRQ 391 (400)
Q Consensus 365 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (400)
|--+.--||-+++.+--++|.|-+.+.
T Consensus 559 ~g~~y~~~fnl~~~~~~~~~~~~~~~~~~ 587 (633)
T PLN02899 559 KGEIYVAFFNLNQEKTKISAKISDLAKAL 587 (633)
T ss_pred CccEEEEEEecCccceeEEEEhhHhHhhc
Confidence 111122366667666666777666554
No 63
>TIGR03356 BGL beta-galactosidase.
Probab=23.98 E-value=2.5e+02 Score=29.25 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=40.0
Q ss_pred CCCC-CEEEeccCCCCCC-------CChhhHHHHHHHHHHHHH---CC---CceEEeccCccccccCCCCCCCCcccccc
Q 039248 160 KNPA-PLVLSEFGFDQRE-------VNLADNLYMTCLMAYAAE---TD---LDWALWALQGSYYLRGGLKGAEETFGALD 225 (400)
Q Consensus 160 ~~g~-Pv~iGEFG~~~~~-------~~~~d~~w~~~~l~~l~~---~g---i~wa~Wa~~Gsyy~r~g~~~~~et~Gll~ 225 (400)
+.+. |++|+|-|....+ .+.....|++..+..+.+ .| +|+++|++---|.-.+ +..--|||+-
T Consensus 334 rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~---gy~~rfGl~~ 410 (427)
T TIGR03356 334 DYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAE---GYSKRFGLVH 410 (427)
T ss_pred hcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhc---ccccccceEE
Confidence 4555 7999999986422 122234566665555543 45 4789999854322111 2345588877
Q ss_pred CCCCC
Q 039248 226 STWQH 230 (400)
Q Consensus 226 ~dW~t 230 (400)
=|..+
T Consensus 411 VD~~~ 415 (427)
T TIGR03356 411 VDYET 415 (427)
T ss_pred ECCCC
Confidence 66654
No 64
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=23.55 E-value=7.6e+02 Score=24.82 Aligned_cols=150 Identities=15% Similarity=0.092 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHh--cCCCcEEEEeccCC------CCCCC-CChhhHHHHHHHHHHHHHhcCCCcEEEEe-CCCCCc
Q 039248 30 DPNEWMKGLSFVADRF--KEKRQVVAISLRNE------LRGPR-QNEPDWYKYISEGARVVHKRNPHVLVFVS-GLNFDL 99 (400)
Q Consensus 30 ~~d~wi~~W~~lA~ry--k~~p~Vvg~DL~NE------P~~~~-~~~~dW~~~~~~~~~AIr~~nP~~lI~Ve-G~~~~~ 99 (400)
...+|.+++..-.++. ++...|. .|.+.. +.... ....+-..+..++++.+|+.+|+.+||.. |...-.
T Consensus 141 ~~~~W~~il~~rl~~l~~kGfDGvf-LD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~ 219 (315)
T TIGR01370 141 WDPEWKAIAFSYLDRVIAQGFDGVY-LDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR 219 (315)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCeEe-eccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh
Confidence 3355766555445555 6766654 554443 22211 12345666777778888999999888764 433211
Q ss_pred cchhhhcCCCcCCCCCcEEEEEeecCCCCCCCcccCCCCchhhhhHHHHHHhhHHHHhhcCCCCCEEEeccCCCCCCCCh
Q 039248 100 DLRFLQKSPLALDLDNKLVYEIHWYSFSQDQNMWKTQPTNIVCYKVTQSFINRAVFLTTRKNPAPLVLSEFGFDQREVNL 179 (400)
Q Consensus 100 dLs~l~~~Pv~l~~~~~lVYs~H~Y~ps~~~~~W~~~~~~~~~~~~~~~~~~~~gfl~~~~~g~Pv~iGEFG~~~~~~~~ 179 (400)
... ..+ .+.-+-++.|-=+|..... ............+.+ +. +.|.||++=|+...... ..
T Consensus 220 ~~~----g~~-~~~idgV~~Eslf~~~~~~-------~~e~dr~~~l~~L~~----~~--~~G~~Vl~IDY~~~~~~-~~ 280 (315)
T TIGR01370 220 DDH----GGL-AATVSGWAVEELFYYAANR-------PTEAERQRRLLALYR----LW--QQGKFVLTVDYVDDGTK-TN 280 (315)
T ss_pred ccc----cch-hhhceEEEecceEEcCCCC-------CCHHHHHHHHHHHHH----HH--HCCCcEEEEEecCCccc-ch
Confidence 100 000 0111222222222332111 000111111122222 22 35999999999876432 11
Q ss_pred hhHHHHHHHHHHHHHCCCce
Q 039248 180 ADNLYMTCLMAYAAETDLDW 199 (400)
Q Consensus 180 ~d~~w~~~~l~~l~~~gi~w 199 (400)
.+..-.+.+.+.++++|+.+
T Consensus 281 ~n~~~~~~~~~~~~~~Gf~p 300 (315)
T TIGR01370 281 ENPARMKDAAEKARAAGLIP 300 (315)
T ss_pred hhHHHHHHHHHHHHHcCCee
Confidence 23456678888888887643
No 65
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.43 E-value=91 Score=30.71 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 68 PDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 68 ~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
....+.++++.+.|++.+|+++|+++..
T Consensus 31 ~~v~~a~~~~~~~v~~~~PDvvVvis~d 58 (278)
T PRK13364 31 KPFFDGFPPVREWLEKVKPDVAVVFYND 58 (278)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 4677889999999999999999999953
No 66
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=23.35 E-value=82 Score=31.61 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCCCC
Q 039248 58 NELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGLNF 97 (400)
Q Consensus 58 NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~~ 97 (400)
+||... .+......++++.+.|++.+|+.+|+++....
T Consensus 17 ~~~~~~--~~~~v~~a~~~l~~~l~~~~PD~iVIigpdH~ 54 (313)
T PRK13370 17 VDPAQE--VLAEVNAVIAAAREFVAAFDPELVVLFAPDHY 54 (313)
T ss_pred CCCChH--HHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 676553 25567788899999999999999999987443
No 67
>PF14088 DUF4268: Domain of unknown function (DUF4268)
Probab=23.12 E-value=1.7e+02 Score=25.25 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=51.1
Q ss_pred CcCCceEEeec--CceEEEeeecCCCCeeeEEeecCCC---ccchhhHHHhhhhcccccccCcceecc
Q 039248 324 SNQSAWSLVSS--SKLHLATKDDEHGGELLCLQISIWT---ESLRFERAIQEKNLASQSLQGPIQIQD 386 (400)
Q Consensus 324 ~~~~~w~~~s~--~~~~~~~~~~~~~~~~lcld~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (400)
..-..|-..+. |.+|++..++... ..++|..+..+ |...||...+.|..-.+.+.+++.-+.
T Consensus 26 p~~~~W~~~~~G~sg~~~~~~~~~~~-~~V~l~I~~~d~~~n~~~fe~L~~~k~~IE~~~g~~l~W~~ 92 (140)
T PF14088_consen 26 PSPDHWINYSTGISGVSLSFVFNKKR-ARVELYIDRPDKEENKEIFEQLKSQKEEIEEEFGEELEWER 92 (140)
T ss_pred CCCCcceEecCCCCCEEEEEEEeCCE-EEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEeee
Confidence 33567876666 6889888867776 89999999999 999999999999999999888876555
No 68
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=22.99 E-value=3.4e+02 Score=26.09 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHH-hcCCCcEEEEeC
Q 039248 36 KGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVH-KRNPHVLVFVSG 94 (400)
Q Consensus 36 ~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr-~~nP~~lI~VeG 94 (400)
..++.|.+++.+..-+...|-.|=|.|.++ ...-...+.++++... +.+.+.+||-=.
T Consensus 12 tv~~~l~~~~p~~~~iy~~D~~~~PYG~ks-~~~i~~~~~~~~~~L~~~~g~d~ivIaCN 70 (251)
T TIGR00067 12 SVLKEIRKQLPKEHYIYVGDTKRFPYGEKS-PEFILEYVLELLTFLKERHNIKLLVVACN 70 (251)
T ss_pred HHHHHHHHHCCCCCEEEEecCCCCCCCCCC-HHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 367888888888777889999999999864 5678888999999999 999988877654
No 69
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=22.92 E-value=1.7e+02 Score=29.64 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 37 GLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 37 ~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
.|..+.+..+++..+|++-= -.+......-=-.-+++.++.|+++|||.+|||+.-
T Consensus 154 D~~~v~~~i~~~tkli~IQR---S~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNC 209 (416)
T COG4100 154 DIQAVKTAISDRTKLIGIQR---SKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNC 209 (416)
T ss_pred cHHHHHHhcCccceEEEEEe---ccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 48888888888888886631 112110001112456788999999999999999853
No 70
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=22.90 E-value=2.1e+02 Score=28.63 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=25.7
Q ss_pred hhHHHHHHhhHHHHhh--cCCCCCEEEeccCCCCCCC---Ch-hhHHHHHHHHHHHH
Q 039248 143 YKVTQSFINRAVFLTT--RKNPAPLVLSEFGFDQREV---NL-ADNLYMTCLMAYAA 193 (400)
Q Consensus 143 ~~~~~~~~~~~gfl~~--~~~g~Pv~iGEFG~~~~~~---~~-~d~~w~~~~l~~l~ 193 (400)
.++.+.+.+....+.+ +..++||+|||.|....+. .. ....+.+.++..+.
T Consensus 206 ~nlfDa~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a~~~nA~~~~~nl~~~~~ 262 (310)
T PF00332_consen 206 TNLFDAMVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGATPENAQAYNQNLIKHVL 262 (310)
T ss_dssp SSHHHHHHHHHHHHHHTTT-TT--EEEEEE---SSSSTTCSHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceeEEeccccccCCCCCCCcchhHHHHHHHHHHHh
Confidence 4555544443333333 1246899999999999875 22 23566666666665
No 71
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.75 E-value=97 Score=30.43 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 67 EPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 67 ~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
+....+.++++.+.|++.+|+.+|+|+..
T Consensus 30 ~~~~~~a~~~~~~~v~~~~PD~iVvis~d 58 (276)
T cd07949 30 WKPFFDGFPPVHDWLEKAKPDVAVVFYND 58 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 34667889999999999999999999963
No 72
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.63 E-value=1.4e+02 Score=31.63 Aligned_cols=25 Identities=16% Similarity=0.426 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeCCC
Q 039248 72 KYISEGARVVHKRNPHVLVFVSGLN 96 (400)
Q Consensus 72 ~~~~~~~~AIr~~nP~~lI~VeG~~ 96 (400)
..+.++++.||+.+|+..|+++|..
T Consensus 77 ~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 77 YIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 4566788999999999999999975
No 73
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.59 E-value=4.3e+02 Score=22.35 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCcEEEE-eccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 30 DPNEWMKGLSFVADRFKEKRQVVAI-SLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 30 ~~d~wi~~W~~lA~ryk~~p~Vvg~-DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
+...+.+.+...... ..|.+|.+ ==.|+.... .....+.+.+++.++.||+..|+..|++-+
T Consensus 24 ~~~~~~~~~~~~~~~--~~pd~vvi~~G~ND~~~~-~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~ 86 (157)
T cd01833 24 LIDQIAAAAADWVLA--AKPDVVLLHLGTNDLVLN-RDPDTAPDRLRALIDQMRAANPDVKIIVAT 86 (157)
T ss_pred cHHHHHHHhhhcccc--CCCCEEEEeccCcccccC-CCHHHHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 345565555433333 36665444 335665432 235688899999999999999998888765
No 74
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=22.36 E-value=1.8e+02 Score=31.91 Aligned_cols=93 Identities=15% Similarity=0.273 Sum_probs=55.8
Q ss_pred HHHHHHH----HHHHHHHhcCCCcEEEEeccCCCCCCC-C------------ChhhHHHHHHH-HHHHHHhcCCCcEEEE
Q 039248 31 PNEWMKG----LSFVADRFKEKRQVVAISLRNELRGPR-Q------------NEPDWYKYISE-GARVVHKRNPHVLVFV 92 (400)
Q Consensus 31 ~d~wi~~----W~~lA~ryk~~p~Vvg~DL~NEP~~~~-~------------~~~dW~~~~~~-~~~AIr~~nP~~lI~V 92 (400)
.++|++- -++=|.|.+.+|.|+.|.--||-.... + ...+...++.+ +.+...+..|....|+
T Consensus 412 ~~eFl~sv~eEV~yn~~Rls~HpSviIfsgNNENEaAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~ 491 (867)
T KOG2230|consen 412 NDEFLSSVREEVRYNAMRLSHHPSVIIFSGNNENEAALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIV 491 (867)
T ss_pred cHHHHHHHHHHHHHHHHhhccCCeEEEEeCCCccHHHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCcee
Confidence 3566553 345678999999999999999965431 0 12344445544 4445556677788888
Q ss_pred eCCCCCccch---hhhcCCCcCCCCCcEEEEEeecCCCC
Q 039248 93 SGLNFDLDLR---FLQKSPLALDLDNKLVYEIHWYSFSQ 128 (400)
Q Consensus 93 eG~~~~~dLs---~l~~~Pv~l~~~~~lVYs~H~Y~ps~ 128 (400)
+...-|..-. .+..+| .++--=.+|+|....
T Consensus 492 SSPsNG~ete~e~~VS~NP-----~dn~~GDVHfYdy~~ 525 (867)
T KOG2230|consen 492 SSPSNGKETEPENYVSSNP-----QDNQNGDVHFYDYTK 525 (867)
T ss_pred cCCCCCcccCccccccCCC-----ccccCCceEeeehhh
Confidence 8766553211 222333 234445689997543
No 75
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.34 E-value=4.8e+02 Score=22.39 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=30.7
Q ss_pred cCCCcEEEEec-cCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeC
Q 039248 46 KEKRQVVAISL-RNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSG 94 (400)
Q Consensus 46 k~~p~Vvg~DL-~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG 94 (400)
...|.+|.+.+ .|..... .+...+.+.++++++++|+.+|+..|++-+
T Consensus 46 ~~~pd~vvl~~G~ND~~~~-~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 46 ALQPKAIFIMIGINDLAQG-TSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred ccCCCEEEEEeeccCCCCC-CCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 44566544432 4665332 235678888888888888877777777755
No 76
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=22.12 E-value=1.2e+02 Score=29.34 Aligned_cols=30 Identities=13% Similarity=0.169 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHHHHhcCCCcEEEEeCCC
Q 039248 67 EPDWYKYISEGARVVHKRNPHVLVFVSGLN 96 (400)
Q Consensus 67 ~~dW~~~~~~~~~AIr~~nP~~lI~VeG~~ 96 (400)
.....+.++++.+.|++..|+.+|+++.-.
T Consensus 26 ~~~~~~~l~~~~~~l~~~~Pd~ivvis~~h 55 (271)
T cd07359 26 RAAVFAAFARIRDRLEAARPDVVVVVGNDH 55 (271)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 446678888999999999999999999843
No 77
>PLN02814 beta-glucosidase
Probab=21.74 E-value=2.1e+02 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.300 Sum_probs=39.0
Q ss_pred CCCC-CEEEeccCCCCCCC----ChhhHHHHHHHHHHHHH---CC---CceEEeccCccccccCCCCCCCCccccccCCC
Q 039248 160 KNPA-PLVLSEFGFDQREV----NLADNLYMTCLMAYAAE---TD---LDWALWALQGSYYLRGGLKGAEETFGALDSTW 228 (400)
Q Consensus 160 ~~g~-Pv~iGEFG~~~~~~----~~~d~~w~~~~l~~l~~---~g---i~wa~Wa~~Gsyy~r~g~~~~~et~Gll~~dW 228 (400)
+.+. ||+|+|-|...... +.....|++.-+..+.+ .| .|+++|++---|--. .+..--|||+-=|.
T Consensus 384 rY~~ppI~ITENG~~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~---~Gy~~RfGLvyVD~ 460 (504)
T PLN02814 384 SYNNPPIYILENGMPMKHDSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELL---GGYTTSFGMYYVNF 460 (504)
T ss_pred hcCCCCEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEECC
Confidence 3444 89999999864321 22234566655554433 45 478899985322111 12334589887777
Q ss_pred CC
Q 039248 229 QH 230 (400)
Q Consensus 229 ~t 230 (400)
.+
T Consensus 461 ~~ 462 (504)
T PLN02814 461 SD 462 (504)
T ss_pred CC
Confidence 65
No 78
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=21.52 E-value=2.1e+02 Score=28.83 Aligned_cols=54 Identities=19% Similarity=0.235 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Q 039248 33 EWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 33 ~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
.+..-++.|.+|| .+.++-||.-.... ..+|.. .+..+.||+..|+.+|.-...
T Consensus 193 ~~~~ql~EL~~~Y--~~d~lWfDg~~~~~-----~~~~~~--~~~~~~i~~~qp~~ii~~r~~ 246 (346)
T PF01120_consen 193 YWLAQLRELLTRY--KPDILWFDGGWPDP-----DEDWDS--AELYNWIRKLQPDVIINNRWG 246 (346)
T ss_dssp HHHHHHHHHHHCS--TESEEEEESTTSCC-----CTHHHH--HHHHHHHHHHSTTSEEECCCS
T ss_pred hhHHHHHHHHhCC--CcceEEecCCCCcc-----ccccCH--HHHHHHHHHhCCeEEEecccC
Confidence 5667788889999 77888899887752 234543 778999999999988876433
No 79
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=21.48 E-value=2.4e+02 Score=29.96 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=25.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCC
Q 039248 21 NGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELR 61 (400)
Q Consensus 21 n~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~ 61 (400)
+||-+.. .++.|.+.=+.+++||++.=.. .=.+|||.
T Consensus 148 GGW~n~~--~v~~F~~YA~~~~~~fgdrVk~--WiT~NEP~ 184 (478)
T PRK09593 148 GGWRNRK--MVGFYERLCRTLFTRYKGLVKY--WLTFNEIN 184 (478)
T ss_pred CCCCChH--HHHHHHHHHHHHHHHhcCcCCE--EEeecchh
Confidence 4554433 4689999999999999984321 22578875
No 80
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=21.45 E-value=2.1e+02 Score=25.22 Aligned_cols=85 Identities=16% Similarity=0.188 Sum_probs=43.2
Q ss_pred CeEEecCCCCCCcccCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHhcCCCcEEEEeccCCCCCCCCChhhHHHHHHHHHH
Q 039248 1 MVLLDNHISKPDWCCSNTDGNGFFGDRYFDPN-EWMKGLSFVADRFKEKRQVVAISLRNELRGPRQNEPDWYKYISEGAR 79 (400)
Q Consensus 1 ~VILD~H~~~~~Wcc~~~dgn~~~~d~~~~~d-~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~ 79 (400)
|||=|.|.... +.+.+-+. +..+ ...+..+.+.++++-.-=|+.=||.++.... ....|..++++...
T Consensus 1 ~~isD~HL~~~--------~~~~~l~~-~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~~~~~--~~~~~~~~~~~~~~ 69 (156)
T cd08165 1 MFLADTHLLGS--------ILGHWLDK-LRREWQMERSFQTSLWLLQPDVVFVLGDLFDEGKWS--TDEEWEDYVERFKK 69 (156)
T ss_pred CccccchhcCC--------cccHHHHH-HhhhHHHHHHHHHHHHhcCCCEEEECCCCCCCCccC--CHHHHHHHHHHHHH
Confidence 78889998432 11222111 1112 2233455555666433335567999986542 23457666655443
Q ss_pred HHHhcCCCcEEEEeCCC
Q 039248 80 VVHKRNPHVLVFVSGLN 96 (400)
Q Consensus 80 AIr~~nP~~lI~VeG~~ 96 (400)
..++...--+++|.|+-
T Consensus 70 ~~~~~~~~~i~~v~GNH 86 (156)
T cd08165 70 MFGHPPDLPLHVVVGNH 86 (156)
T ss_pred HhccCCCCeEEEEcCCC
Confidence 33332233467777753
No 81
>PLN02849 beta-glucosidase
Probab=21.29 E-value=2.6e+02 Score=30.01 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=40.2
Q ss_pred CCCC-CEEEeccCCCCCCC------ChhhHHHHHHHHHHHHH---CC---CceEEeccCccccccCCCCCCCCccccccC
Q 039248 160 KNPA-PLVLSEFGFDQREV------NLADNLYMTCLMAYAAE---TD---LDWALWALQGSYYLRGGLKGAEETFGALDS 226 (400)
Q Consensus 160 ~~g~-Pv~iGEFG~~~~~~------~~~d~~w~~~~l~~l~~---~g---i~wa~Wa~~Gsyy~r~g~~~~~et~Gll~~ 226 (400)
+.+. ||+|+|-|....+. +.....|++.-+..+.+ .| .|+++|++---|--. .+...-|||+-=
T Consensus 382 rY~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~---~Gy~~RfGLi~V 458 (503)
T PLN02849 382 SYGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELL---KGYEFSFGLYSV 458 (503)
T ss_pred hcCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchh---ccccCccceEEE
Confidence 4555 79999999874321 22234566655555543 45 478899985322111 123456899877
Q ss_pred CCCC
Q 039248 227 TWQH 230 (400)
Q Consensus 227 dW~t 230 (400)
|..+
T Consensus 459 D~~~ 462 (503)
T PLN02849 459 NFSD 462 (503)
T ss_pred CCCC
Confidence 7765
No 82
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=21.21 E-value=2.3e+02 Score=30.14 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=26.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEeccCCCC
Q 039248 21 NGFFGDRYFDPNEWMKGLSFVADRFKEKRQVVAISLRNELR 61 (400)
Q Consensus 21 n~~~~d~~~~~d~wi~~W~~lA~ryk~~p~Vvg~DL~NEP~ 61 (400)
+||-+ + ...+.|.+..+.+++||++.-.. .=.+|||.
T Consensus 144 GGW~n-~-~~~~~F~~Ya~~~f~~fgdrVk~--WiT~NEp~ 180 (477)
T PRK15014 144 GSWTN-R-KVVDFFVRFAEVVFERYKHKVKY--WMTFNEIN 180 (477)
T ss_pred CCCCC-h-HHHHHHHHHHHHHHHHhcCcCCE--EEEecCcc
Confidence 35444 3 35689999999999999985432 22678885
No 83
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=21.14 E-value=5.8e+02 Score=25.47 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcC-----CCcEEEEeccCCCCCCCCChhhHHHHHHHHHHHHHhcCCCcEEE-EeCCCCCccchhhhc
Q 039248 33 EWMKGLSFVADRFKE-----KRQVVAISLRNELRGPRQNEPDWYKYISEGARVVHKRNPHVLVF-VSGLNFDLDLRFLQK 106 (400)
Q Consensus 33 ~wi~~W~~lA~ryk~-----~p~Vvg~DL~NEP~~~~~~~~dW~~~~~~~~~AIr~~nP~~lI~-VeG~~~~~dLs~l~~ 106 (400)
++.+.++.|++..+. --+||++-+=||...... =..+++.+.++.++..++.++. -.+..|+.-+.. .
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~~~~----~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~-~- 191 (319)
T PF01301_consen 118 AVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGSYGT----DRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPD-G- 191 (319)
T ss_dssp HHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGCTSS-----HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCC-C-
T ss_pred HHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCCCcc----cHhHHHHHHHHHHHhhCccceeeccCCCccccccc-C-
Confidence 344455555555433 246999999999762211 2567888888888888873333 333334321111 0
Q ss_pred CCCcCCCCCcEEEEEeecCCC
Q 039248 107 SPLALDLDNKLVYEIHWYSFS 127 (400)
Q Consensus 107 ~Pv~l~~~~~lVYs~H~Y~ps 127 (400)
.+ .+..+|....+.+.
T Consensus 192 ---~~--~g~~~~~~~~~~~~ 207 (319)
T PF01301_consen 192 ---GL--PGADIYATDNFPPG 207 (319)
T ss_dssp ----T--TTGSCEEEEEETTT
T ss_pred ---CC--CcceEEeccccCCC
Confidence 11 23347777776644
No 84
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=20.97 E-value=4.1e+02 Score=23.13 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCcEEEEeccCCCCCCC-----CChhhHHHHHHHHHHHHH-hcCCCcEEEEeCCCCCccch
Q 039248 37 GLSFVADRFKEKRQVVAISLRNELRGPR-----QNEPDWYKYISEGARVVH-KRNPHVLVFVSGLNFDLDLR 102 (400)
Q Consensus 37 ~W~~lA~ryk~~p~Vvg~DL~NEP~~~~-----~~~~dW~~~~~~~~~AIr-~~nP~~lI~VeG~~~~~dLs 102 (400)
.|..++.+++..-+|+++|+..= +.. ....++...++..+.+++ ..+.+.++++ |.++|+.+.
T Consensus 16 ~~~~~~~~L~~~~~v~~~d~~g~--G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-G~S~Gg~ia 84 (251)
T TIGR03695 16 DWQALIELLGPHFRCLAIDLPGH--GSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLV-GYSMGGRIA 84 (251)
T ss_pred hHHHHHHHhcccCeEEEEcCCCC--CCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEE-EeccHHHHH
Confidence 36677777765567999999752 211 123467777766444444 4455555554 777776443
No 85
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=20.56 E-value=1.1e+02 Score=22.08 Aligned_cols=22 Identities=14% Similarity=0.428 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCCcEEEEeCC
Q 039248 74 ISEGARVVHKRNPHVLVFVSGL 95 (400)
Q Consensus 74 ~~~~~~AIr~~nP~~lI~VeG~ 95 (400)
+.++.+.|++.||+..|.++-+
T Consensus 29 ~~~l~~~I~~~Dp~AFi~v~~v 50 (55)
T PF10035_consen 29 LPKLKKIIKEIDPKAFISVSDV 50 (55)
T ss_dssp HHHHHHHHHCC-TT-EEEE---
T ss_pred HHHHHHHHHHhCCCEEEEEEcc
Confidence 4567889999999999998653
No 86
>PF11429 Colicin_D: Colicin D; InterPro: IPR024440 Colicin D is a bacteriocin that kills target cells by cleaving tRNA(Arg). This entry represents a domain found in the C terminus of colicin D, which is responsible for its catalytic activity []. The domain is also found in some S-type pyocins, which are also bacteriocins.; GO: 0004540 ribonuclease activity; PDB: 1TFO_A 1V74_A 1TFK_A.
Probab=20.46 E-value=79 Score=26.10 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=29.3
Q ss_pred cccccCCCCCCCChhHHHHHHHhh---hcccCCCCCCCCCcceeecCCCCCeeeccCCCc
Q 039248 221 FGALDSTWQHPRNPNFLERLRFLQ---TKTHVPTTSRTRTSYIIFHPLSGNCVNANARNE 277 (400)
Q Consensus 221 ~Gll~~dW~t~r~~~~l~rl~~l~---~~~~~p~~~~~~p~~~~~~p~tg~c~~~~~~~~ 277 (400)
||+-..+|....-.+|-.+|...- .....+.....+++++.|-|.|+.||......+
T Consensus 12 FGi~~~~~N~~t~~~F~~aI~~hi~~~~tv~~GtYr~~~~skV~~N~~T~~~Vi~d~~G~ 71 (92)
T PF11429_consen 12 FGITGTNWNKETLEEFEDAIKEHIKNPDTVEKGTYRRVKDSKVYFNPKTNNVVIIDKDGN 71 (92)
T ss_dssp GT------SHHHHHHHHHHHHHHHH-TT-EE--BETTSTT-EEEEETTTTEEEEE-TTS-
T ss_pred cCcccCCCChhhHHHHHHHHHHHhCCCCeEeccceecCCCcEEEEeCCCCeEEEEcCCCC
Confidence 888887776555556665554331 111222333455789999999999999976554
No 87
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=20.41 E-value=1.8e+02 Score=30.92 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=39.3
Q ss_pred CCCCCEEEeccCCCCCCC--------ChhhHHHHHHHHHHHH----HCC---CceEEeccCccccccCCCCC-CCCcccc
Q 039248 160 KNPAPLVLSEFGFDQREV--------NLADNLYMTCLMAYAA----ETD---LDWALWALQGSYYLRGGLKG-AEETFGA 223 (400)
Q Consensus 160 ~~g~Pv~iGEFG~~~~~~--------~~~d~~w~~~~l~~l~----~~g---i~wa~Wa~~Gsyy~r~g~~~-~~et~Gl 223 (400)
+.+.|++|+|-|....+. +.....|++.-+..+. +.| .|+++|++---|--.. + ...-|||
T Consensus 365 ~Y~~Pi~ItENG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~---G~y~~RfGl 441 (476)
T PRK09589 365 HYQLPLFIVENGFGAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGT---GEMKKRYGF 441 (476)
T ss_pred hcCCCEEEEeCCcccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccC---Cccccceee
Confidence 567899999999874321 1122345544444332 345 4788999853221111 1 2356899
Q ss_pred ccCCCCC
Q 039248 224 LDSTWQH 230 (400)
Q Consensus 224 l~~dW~t 230 (400)
+-=|..+
T Consensus 442 v~VD~~~ 448 (476)
T PRK09589 442 IYVDKDN 448 (476)
T ss_pred EEEcCCC
Confidence 8777765
Done!