BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039249
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4,
chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1
Length = 305
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 83/91 (91%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MIKQPI R +GQATDVEIARKEIK++K E+VKLY+KH GK+PEQIEAD++RPKYFSP+EA
Sbjct: 215 MIKQPIARFQGQATDVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEA 274
Query: 61 VEYGIMDKVLYTEKSPEDHGVVSDLKKAQLI 91
VEYGI+DKV+Y E+ +D GVVSDLKKAQLI
Sbjct: 275 VEYGIIDKVVYNERGSQDRGVVSDLKKAQLI 305
>sp|Q60107|CLPP_YEREN ATP-dependent Clp protease proteolytic subunit OS=Yersinia
enterocolitica GN=clpP PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L AKH GK+ E+IE D R ++ S EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|A1JNN2|CLPP_YERE8 ATP-dependent Clp protease proteolytic subunit OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=clpP PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L AKH GK+ E+IE D R ++ S EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAKHTGKSLEEIERDTERDRFLSADEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|B4EU53|CLPP_PROMH ATP-dependent Clp protease proteolytic subunit OS=Proteus mirabilis
(strain HI4320) GN=clpP PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD++I +EI VK+ + +L A+H GK+ E+IE D R ++ S +EA
Sbjct: 134 MIHQPLGGYQGQATDIQIHAQEILKVKSRMNELMAQHTGKSIEEIERDTERDRFLSANEA 193
Query: 61 VEYGIMDKVLYTEKS 75
+EYG++DKV YT++S
Sbjct: 194 LEYGLVDKV-YTQRS 207
>sp|Q5P161|CLPP_AROAE ATP-dependent Clp protease proteolytic subunit OS=Aromatoleum
aromaticum (strain EbN1) GN=clpP PE=3 SV=1
Length = 212
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 52/70 (74%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQA+D+EI +EI ++A+L ++ AKH G+ EQIE D R ++ S ++A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAREILGIRAKLNEMLAKHTGQPIEQIEKDTDRDRFMSAADA 196
Query: 61 VEYGIMDKVL 70
VEYGI+DKVL
Sbjct: 197 VEYGIVDKVL 206
>sp|Q6D827|CLPP_ERWCT ATP-dependent Clp protease proteolytic subunit OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=clpP PE=3 SV=1
Length = 207
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VKA++ +L AKH G+ E IE D R ++ S SEA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKAKMNELMAKHTGQPLEAIERDTERDRFLSASEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|Q1LTJ9|CLPP_BAUCH ATP-dependent Clp protease proteolytic subunit OS=Baumannia
cicadellinicola subsp. Homalodisca coagulata GN=clpP
PE=3 SV=1
Length = 205
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 49/70 (70%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD++I KEI VK + +L AKH GKT + IE D R ++ S +EA
Sbjct: 132 MIHQPMGGFQGQATDIQIHAKEILKVKNRMNELMAKHIGKTLQVIEQDTERDRFLSANEA 191
Query: 61 VEYGIMDKVL 70
V+YG++D +L
Sbjct: 192 VDYGLVDAIL 201
>sp|P0A1D7|CLPP_SALTY ATP-dependent Clp protease proteolytic subunit OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|P0A1D8|CLPP_SALTI ATP-dependent Clp protease proteolytic subunit OS=Salmonella typhi
GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B4TMC6|CLPP_SALSV ATP-dependent Clp protease proteolytic subunit OS=Salmonella
schwarzengrund (strain CVM19633) GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B4SWU1|CLPP_SALNS ATP-dependent Clp protease proteolytic subunit OS=Salmonella
newport (strain SL254) GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B4T9E3|CLPP_SALHS ATP-dependent Clp protease proteolytic subunit OS=Salmonella
heidelberg (strain SL476) GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B5QTJ6|CLPP_SALEP ATP-dependent Clp protease proteolytic subunit OS=Salmonella
enteritidis PT4 (strain P125109) GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q57SB5|CLPP_SALCH ATP-dependent Clp protease proteolytic subunit OS=Salmonella
choleraesuis (strain SC-B67) GN=clpP PE=3 SV=2
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B5BD83|CLPP_SALPK ATP-dependent Clp protease proteolytic subunit OS=Salmonella
paratyphi A (strain AKU_12601) GN=clpP PE=3 SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q5PFN4|CLPP_SALPA ATP-dependent Clp protease proteolytic subunit OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=clpP PE=3
SV=1
Length = 207
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMAHHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|C5BCJ6|CLPP_EDWI9 ATP-dependent Clp protease proteolytic subunit OS=Edwardsiella
ictaluri (strain 93-146) GN=clpP PE=3 SV=1
Length = 206
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI ++KA + L AKH G+ E IE D R ++ S +A
Sbjct: 133 MIHQPLGGFQGQATDIEIHAKEILSIKARMNTLMAKHSGQPIEVIERDTERDRFMSAQDA 192
Query: 61 VEYGIMDKVL 70
VEYG++D VL
Sbjct: 193 VEYGLVDAVL 202
>sp|Q5WVJ0|CLPP_LEGPL ATP-dependent Clp protease proteolytic subunit OS=Legionella
pneumophila (strain Lens) GN=clpP PE=3 SV=1
Length = 214
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G GQATD+EI +E V+ L + AKH KTP+QI D R + S ++A
Sbjct: 133 MIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQA 192
Query: 61 VEYGIMDKVLY 71
+EYG++DKVLY
Sbjct: 193 MEYGLIDKVLY 203
>sp|Q3Z4W6|CLPP_SHISS ATP-dependent Clp protease proteolytic subunit OS=Shigella sonnei
(strain Ss046) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|P0A6H0|CLPP_SHIFL ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q0T7E6|CLPP_SHIF8 ATP-dependent Clp protease proteolytic subunit OS=Shigella flexneri
serotype 5b (strain 8401) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q32JJ3|CLPP_SHIDS ATP-dependent Clp protease proteolytic subunit OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q325G4|CLPP_SHIBS ATP-dependent Clp protease proteolytic subunit OS=Shigella boydii
serotype 4 (strain Sb227) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q5ZUD9|CLPP_LEGPH ATP-dependent Clp protease proteolytic subunit OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=clpP PE=3 SV=1
Length = 214
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G GQATD+EI +E V+ L + AKH KTP+QI D R + S ++A
Sbjct: 133 MIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQA 192
Query: 61 VEYGIMDKVLY 71
+EYG++DKVLY
Sbjct: 193 MEYGLIDKVLY 203
>sp|Q5X451|CLPP_LEGPA ATP-dependent Clp protease proteolytic subunit OS=Legionella
pneumophila (strain Paris) GN=clpP PE=3 SV=1
Length = 214
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G GQATD+EI +E V+ L + AKH KTP+QI D R + S ++A
Sbjct: 133 MIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQA 192
Query: 61 VEYGIMDKVLY 71
+EYG++DKVLY
Sbjct: 193 MEYGLIDKVLY 203
>sp|Q1RF98|CLPP_ECOUT ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain UTI89 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|P0A6G7|CLPP_ECOLI ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain K12) GN=clpP PE=1 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|B1J011|CLPP_ECOLC ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|P0A6G8|CLPP_ECOL6 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=clpP PE=3
SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|Q0TKK4|CLPP_ECOL5 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|A1A8A6|CLPP_ECOK1 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O1:K1 / APEC GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|A7ZX95|CLPP_ECOHS ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O9:H4 (strain HS) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|P0A6G9|CLPP_ECO57 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O157:H7 GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|A7ZIJ5|CLPP_ECO24 ATP-dependent Clp protease proteolytic subunit OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=clpP PE=3 SV=1
Length = 207
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK + +L A H G++ EQIE D R ++ S EA
Sbjct: 134 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEA 193
Query: 61 VEYGIMDKVL 70
VEYG++D +L
Sbjct: 194 VEYGLVDSIL 203
>sp|A5ID17|CLPP_LEGPC ATP-dependent Clp protease proteolytic subunit OS=Legionella
pneumophila (strain Corby) GN=clpP PE=3 SV=1
Length = 214
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G GQATD+EI +E V+ L + AKH KTP+QI D R + S ++A
Sbjct: 133 MIHQPLGGYRGQATDIEIHARETLAVRERLNNIMAKHTKKTPDQIMRDTERDNFMSATQA 192
Query: 61 VEYGIMDKVLY 71
+EYG++DKVLY
Sbjct: 193 MEYGLIDKVLY 203
>sp|A1K783|CLPP_AZOSB ATP-dependent Clp protease proteolytic subunit OS=Azoarcus sp.
(strain BH72) GN=clpP PE=3 SV=1
Length = 212
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQA+D+EI +EI ++ L + AKH G+T EQIE D R + S + A
Sbjct: 137 MIHQPLGGFQGQASDIEIHAREILYLRERLNGMLAKHTGQTIEQIEKDTDRDNFMSATAA 196
Query: 61 VEYGIMDKVL 70
VEYG++DKVL
Sbjct: 197 VEYGLVDKVL 206
>sp|Q2NV79|CLPP_SODGM ATP-dependent Clp protease proteolytic subunit OS=Sodalis
glossinidius (strain morsitans) GN=clpP PE=3 SV=2
Length = 194
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VKA + +L AKH G+ E IE D R ++ S EA
Sbjct: 121 MIHQPLGGFQGQATDIEIHAREILKVKARMNELMAKHTGQPLEVIERDTERDRFLSAPEA 180
Query: 61 VEYGIMDKVL 70
V+YG++D VL
Sbjct: 181 VDYGLVDSVL 190
>sp|Q3B0U1|CLPP2_SYNS9 ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus
sp. (strain CC9902) GN=clpP2 PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQA D+EI KEI +K L L A+H G+ ++I D R + SP+EA
Sbjct: 126 MIHQPLGGAQGQAVDIEIQAKEILFLKETLNGLLAEHTGQPLDKISEDTDRDYFLSPAEA 185
Query: 61 VEYGIMDKVLYTEKSPEDHGVVSD 84
VEYG++D+V+ S D G+V+D
Sbjct: 186 VEYGLIDRVV---DSSGDEGIVTD 206
>sp|Q66DT4|CLPP_YERPS ATP-dependent Clp protease proteolytic subunit OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=clpP
PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|A4TPE3|CLPP_YERPP ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis
(strain Pestoides F) GN=clpP PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|Q1CL65|CLPP_YERPN ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=clpP PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|Q8ZC65|CLPP_YERPE ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis
GN=clpP PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|Q1C4K8|CLPP_YERPA ATP-dependent Clp protease proteolytic subunit OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=clpP PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|A7FLC4|CLPP_YERP3 ATP-dependent Clp protease proteolytic subunit OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=clpP PE=3 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI KEI VK+ + +L A H GK+ E+IE D R ++ S ++
Sbjct: 134 MIHQPLGGFQGQATDIEIHAKEILKVKSRMNELMAYHTGKSLEEIERDTERDRFLSAEQS 193
Query: 61 VEYGIMDKVL 70
VEYG++D V
Sbjct: 194 VEYGLVDSVF 203
>sp|Q7N0L3|CLPP_PHOLL ATP-dependent Clp protease proteolytic subunit OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=clpP PE=3
SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI VK+ + +L AKH G+ E+I D R ++ S EA
Sbjct: 134 MIHQPLGGFQGQATDIEIHAQEILKVKSRMNELMAKHTGRPIEEIAKDTERDRFLSADEA 193
Query: 61 VEYGIMDKVL 70
VEYG++DK+
Sbjct: 194 VEYGLVDKIF 203
>sp|Q8D346|CLPP_WIGBR ATP-dependent Clp protease proteolytic subunit OS=Wigglesworthia
glossinidia brevipalpis GN=clpP PE=3 SV=1
Length = 194
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 49/74 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+ I EI +K +++L +KH G++ E I D R ++FS SEA
Sbjct: 121 MIHQPLGGSQGQATDIAIHTTEILKIKKCMIELLSKHTGQSAEIISKDTERDRFFSGSEA 180
Query: 61 VEYGIMDKVLYTEK 74
V YG++DKV+ K
Sbjct: 181 VIYGLIDKVITCRK 194
>sp|Q7MX09|CLPP_PORGI ATP-dependent Clp protease proteolytic subunit OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=clpP PE=3 SV=1
Length = 222
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G ++GQA+D+EIA +EI VK EL + + H GK EQ+E D R + + EA
Sbjct: 148 MIHQPLGGMQGQASDLEIAAREILRVKKELYTIISSHSGKPVEQVEKDSDRDYWMTAPEA 207
Query: 61 VEYGIMDKVL 70
+EYG++DK+L
Sbjct: 208 LEYGMIDKIL 217
>sp|Q1ICA8|CLPP_PSEE4 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
entomophila (strain L48) GN=clpP PE=3 SV=1
Length = 213
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 46/69 (66%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI N+KA L +L A H G++ E I+ D R + S + A
Sbjct: 137 MIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAHHTGQSLETIKRDTERDNFMSAARA 196
Query: 61 VEYGIMDKV 69
EYG++D V
Sbjct: 197 AEYGLIDSV 205
>sp|A0LDT4|CLPP_MAGSM ATP-dependent Clp protease proteolytic subunit OS=Magnetococcus sp.
(strain MC-1) GN=clpP PE=3 SV=1
Length = 202
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G GQA+D EI +EI ++ L ++ + H GK EQ++ D R + S +EA
Sbjct: 121 MIHQPLGGFSGQASDFEIHAREILRIRENLNQVLSHHTGKPLEQVQLDTERDNFLSATEA 180
Query: 61 VEYGIMDKVLYTEKSPE 77
VEYG++DKV+ + PE
Sbjct: 181 VEYGLVDKVISHRELPE 197
>sp|Q88KJ0|CLPP_PSEPK ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas
putida (strain KT2440) GN=clpP PE=3 SV=1
Length = 213
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%)
Query: 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60
MI QP+G +GQATD+EI +EI N+KA L +L A H G+ E I+ D R + S S A
Sbjct: 137 MIHQPLGGFQGQATDIEIHAQEILNIKARLNELLAYHTGQDLETIKRDTERDNFMSASRA 196
Query: 61 VEYGIMDKV 69
EYG++D V
Sbjct: 197 AEYGLIDSV 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,480,515
Number of Sequences: 539616
Number of extensions: 1232527
Number of successful extensions: 3609
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2893
Number of HSP's gapped (non-prelim): 719
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)