Query 039249
Match_columns 91
No_of_seqs 151 out of 1059
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0740 ClpP Protease subunit 100.0 6.3E-29 1.4E-33 177.6 8.2 75 1-75 121-195 (200)
2 PRK12552 ATP-dependent Clp pro 100.0 3.1E-28 6.8E-33 176.5 9.2 75 1-75 143-217 (222)
3 PRK14513 ATP-dependent Clp pro 99.9 1.4E-27 3E-32 170.9 9.0 77 1-77 121-197 (201)
4 PRK14514 ATP-dependent Clp pro 99.9 5.1E-27 1.1E-31 170.0 8.0 73 1-73 148-220 (221)
5 PRK12551 ATP-dependent Clp pro 99.9 6.4E-27 1.4E-31 166.8 8.2 74 1-74 119-192 (196)
6 KOG0840 ATP-dependent Clp prot 99.9 2.4E-26 5.2E-31 169.1 7.1 75 1-75 186-260 (275)
7 CHL00028 clpP ATP-dependent Cl 99.9 8.6E-26 1.9E-30 161.4 8.6 74 1-74 124-198 (200)
8 TIGR00493 clpP ATP-dependent C 99.9 1.5E-24 3.3E-29 153.5 7.5 71 1-71 120-190 (191)
9 PRK14512 ATP-dependent Clp pro 99.9 2.3E-24 5.1E-29 153.5 8.3 73 1-73 117-189 (197)
10 PRK00277 clpP ATP-dependent Cl 99.9 1.3E-23 2.8E-28 149.6 8.9 74 1-74 125-198 (200)
11 cd07013 S14_ClpP Caseinolytic 99.9 9.7E-23 2.1E-27 140.8 7.9 69 1-69 94-162 (162)
12 PRK12553 ATP-dependent Clp pro 99.9 1.6E-21 3.4E-26 139.6 8.6 74 1-74 129-204 (207)
13 PF00574 CLP_protease: Clp pro 99.9 5E-22 1.1E-26 138.0 5.4 73 1-73 110-182 (182)
14 cd07017 S14_ClpP_2 Caseinolyti 99.9 1.8E-21 3.9E-26 135.1 7.6 69 1-69 103-171 (171)
15 cd07016 S14_ClpP_1 Caseinolyti 99.6 1.1E-15 2.3E-20 104.3 7.3 69 1-69 92-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 99.5 1.6E-13 3.5E-18 96.3 6.4 67 1-73 95-166 (172)
17 cd00394 Clp_protease_like Case 99.4 3.7E-13 8E-18 91.4 5.9 69 1-69 91-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 98.9 5.5E-09 1.2E-13 73.3 7.0 71 2-73 96-166 (187)
19 cd07021 Clp_protease_NfeD_like 98.8 2.9E-08 6.4E-13 69.7 6.7 67 2-73 93-172 (178)
20 cd07014 S49_SppA Signal peptid 98.4 1.2E-06 2.5E-11 60.7 6.8 54 19-72 116-169 (177)
21 TIGR00706 SppA_dom signal pept 97.9 4.9E-05 1.1E-09 54.0 7.2 58 14-72 138-195 (207)
22 cd07023 S49_Sppa_N_C Signal pe 97.9 5.1E-05 1.1E-09 53.7 6.5 58 13-71 142-199 (208)
23 cd07022 S49_Sppa_36K_type Sign 97.9 6.4E-05 1.4E-09 53.6 6.9 57 13-71 149-205 (214)
24 cd07019 S49_SppA_1 Signal pept 97.8 8.4E-05 1.8E-09 53.0 6.9 54 17-71 149-202 (211)
25 PF01343 Peptidase_S49: Peptid 97.7 0.00015 3.3E-09 49.3 6.3 56 15-71 84-139 (154)
26 TIGR00705 SppA_67K signal pept 97.6 0.0003 6.6E-09 57.3 7.3 58 12-70 452-509 (584)
27 cd07018 S49_SppA_67K_type Sign 96.9 0.0067 1.5E-07 43.5 7.3 56 15-71 157-212 (222)
28 PRK10949 protease 4; Provision 95.7 0.048 1E-06 45.1 7.3 56 15-71 473-528 (618)
29 PRK11778 putative inner membra 95.1 0.077 1.7E-06 40.9 6.1 55 15-72 232-286 (330)
30 TIGR00705 SppA_67K signal pept 94.2 0.2 4.3E-06 41.1 6.7 56 17-72 207-269 (584)
31 PRK06213 enoyl-CoA hydratase; 93.9 0.033 7.2E-07 39.8 1.6 29 45-73 153-181 (229)
32 PRK05869 enoyl-CoA hydratase; 93.3 0.07 1.5E-06 38.2 2.5 30 45-74 160-189 (222)
33 COG0616 SppA Periplasmic serin 92.8 0.41 8.9E-06 36.3 6.1 57 15-72 206-262 (317)
34 PRK05862 enoyl-CoA hydratase; 92.8 0.084 1.8E-06 38.4 2.2 29 46-74 156-184 (257)
35 PRK06494 enoyl-CoA hydratase; 92.8 0.095 2.1E-06 38.2 2.5 29 45-73 155-183 (259)
36 PRK06144 enoyl-CoA hydratase; 92.5 0.097 2.1E-06 38.2 2.3 29 45-73 164-192 (262)
37 PRK08259 enoyl-CoA hydratase; 92.4 0.11 2.5E-06 37.8 2.5 30 45-74 154-183 (254)
38 PRK07799 enoyl-CoA hydratase; 92.2 0.16 3.5E-06 37.0 3.1 30 45-74 161-190 (263)
39 PRK08150 enoyl-CoA hydratase; 91.9 0.15 3.3E-06 37.1 2.7 29 46-74 154-182 (255)
40 PRK03580 carnitinyl-CoA dehydr 91.7 0.13 2.7E-06 37.6 2.1 30 45-74 155-184 (261)
41 PRK08139 enoyl-CoA hydratase; 91.7 0.17 3.6E-06 37.1 2.7 30 45-74 164-193 (266)
42 cd06558 crotonase-like Crotona 91.7 0.44 9.6E-06 32.5 4.7 38 33-72 144-181 (195)
43 PRK09245 enoyl-CoA hydratase; 91.7 0.12 2.6E-06 37.7 1.9 29 46-74 165-193 (266)
44 PRK06563 enoyl-CoA hydratase; 91.6 0.13 2.7E-06 37.4 2.0 28 46-73 154-181 (255)
45 PRK09076 enoyl-CoA hydratase; 91.6 0.19 4E-06 36.6 2.9 29 46-74 157-185 (258)
46 PRK06495 enoyl-CoA hydratase; 91.6 0.13 2.8E-06 37.5 2.0 30 44-73 154-183 (257)
47 PRK06143 enoyl-CoA hydratase; 91.6 0.21 4.6E-06 36.4 3.1 29 45-73 160-188 (256)
48 PRK07658 enoyl-CoA hydratase; 91.5 0.16 3.6E-06 36.7 2.5 29 46-74 156-184 (257)
49 PRK07511 enoyl-CoA hydratase; 91.5 0.19 4.1E-06 36.5 2.8 30 45-74 159-188 (260)
50 PRK07327 enoyl-CoA hydratase; 91.3 0.13 2.8E-06 37.7 1.8 30 45-74 167-196 (268)
51 PRK05980 enoyl-CoA hydratase; 91.2 0.15 3.2E-06 37.1 2.0 28 46-73 162-189 (260)
52 PRK07260 enoyl-CoA hydratase; 91.1 0.15 3.4E-06 36.9 2.0 30 45-74 159-188 (255)
53 PRK08252 enoyl-CoA hydratase; 90.9 0.23 5E-06 36.0 2.8 30 45-74 152-181 (254)
54 PRK08290 enoyl-CoA hydratase; 90.8 0.16 3.4E-06 37.8 1.9 29 45-73 177-205 (288)
55 PRK06023 enoyl-CoA hydratase; 90.8 0.15 3.3E-06 36.9 1.7 28 46-73 159-186 (251)
56 PRK11423 methylmalonyl-CoA dec 90.6 0.15 3.2E-06 37.3 1.5 29 45-73 157-185 (261)
57 PRK09674 enoyl-CoA hydratase-i 90.6 0.21 4.6E-06 36.3 2.3 30 45-74 153-182 (255)
58 PLN02600 enoyl-CoA hydratase 90.5 0.22 4.7E-06 36.2 2.4 29 46-74 150-178 (251)
59 PRK07659 enoyl-CoA hydratase; 90.5 0.11 2.4E-06 37.8 0.8 27 44-70 158-184 (260)
60 PLN02921 naphthoate synthase 90.4 0.18 3.8E-06 38.5 1.9 30 45-74 222-251 (327)
61 PRK06190 enoyl-CoA hydratase; 90.2 0.22 4.8E-06 36.5 2.1 30 44-73 154-183 (258)
62 PRK08138 enoyl-CoA hydratase; 89.8 0.42 9.1E-06 34.8 3.4 30 45-74 159-188 (261)
63 PRK07938 enoyl-CoA hydratase; 89.7 0.36 7.9E-06 35.0 3.0 29 45-73 152-180 (249)
64 PLN02888 enoyl-CoA hydratase 89.7 0.4 8.7E-06 35.2 3.2 29 45-73 160-188 (265)
65 PRK07396 dihydroxynaphthoic ac 89.6 0.36 7.7E-06 35.5 2.9 29 45-73 168-196 (273)
66 PF00378 ECH: Enoyl-CoA hydrat 89.6 0.17 3.6E-06 36.2 1.1 28 47-74 153-180 (245)
67 PRK07110 polyketide biosynthes 89.5 0.37 8E-06 34.9 2.8 30 45-74 155-184 (249)
68 PRK07657 enoyl-CoA hydratase; 89.4 0.3 6.5E-06 35.5 2.4 29 46-74 159-187 (260)
69 PRK06688 enoyl-CoA hydratase; 89.2 0.27 5.8E-06 35.6 2.0 27 47-73 159-185 (259)
70 PRK08788 enoyl-CoA hydratase; 89.2 0.51 1.1E-05 35.4 3.5 29 45-73 182-210 (287)
71 PRK07112 polyketide biosynthes 89.1 0.47 1E-05 34.5 3.2 28 45-72 156-183 (255)
72 PRK08258 enoyl-CoA hydratase; 88.9 0.5 1.1E-05 34.8 3.2 29 45-73 175-203 (277)
73 PRK10949 protease 4; Provision 88.9 2.6 5.6E-05 35.0 7.6 52 21-72 230-288 (618)
74 PRK07509 enoyl-CoA hydratase; 88.8 0.25 5.3E-06 35.9 1.5 28 44-71 162-189 (262)
75 PRK08321 naphthoate synthase; 88.6 0.33 7.3E-06 36.3 2.2 30 45-74 197-226 (302)
76 PRK05981 enoyl-CoA hydratase; 88.5 0.31 6.7E-06 35.5 1.9 29 46-74 165-193 (266)
77 PRK06127 enoyl-CoA hydratase; 88.4 0.57 1.2E-05 34.3 3.2 29 45-73 167-195 (269)
78 TIGR03210 badI 2-ketocyclohexa 88.2 0.33 7.1E-06 35.3 1.9 27 47-73 157-183 (256)
79 PRK05995 enoyl-CoA hydratase; 88.2 0.55 1.2E-05 34.1 3.0 29 45-73 159-187 (262)
80 TIGR03189 dienoyl_CoA_hyt cycl 88.2 0.66 1.4E-05 33.7 3.4 36 35-72 141-176 (251)
81 PLN02664 enoyl-CoA hydratase/d 88.0 0.71 1.5E-05 33.9 3.5 27 46-72 173-199 (275)
82 PLN03214 probable enoyl-CoA hy 88.0 0.83 1.8E-05 33.8 3.9 30 44-73 168-197 (278)
83 PRK08140 enoyl-CoA hydratase; 87.6 0.69 1.5E-05 33.6 3.3 29 46-74 161-189 (262)
84 PRK06210 enoyl-CoA hydratase; 87.6 0.66 1.4E-05 33.9 3.2 30 44-73 168-197 (272)
85 PLN02267 enoyl-CoA hydratase/i 87.6 0.56 1.2E-05 33.9 2.7 26 47-72 159-184 (239)
86 PRK12478 enoyl-CoA hydratase; 87.4 0.56 1.2E-05 35.1 2.8 31 43-73 168-198 (298)
87 TIGR02280 PaaB1 phenylacetate 87.2 0.75 1.6E-05 33.4 3.2 28 46-73 155-182 (256)
88 PRK05809 3-hydroxybutyryl-CoA 87.2 0.61 1.3E-05 33.8 2.7 29 45-73 158-186 (260)
89 PRK05870 enoyl-CoA hydratase; 87.0 0.22 4.8E-06 36.0 0.3 27 44-70 155-181 (249)
90 TIGR01929 menB naphthoate synt 86.9 0.64 1.4E-05 33.9 2.7 28 46-73 159-186 (259)
91 PRK05864 enoyl-CoA hydratase; 86.9 0.76 1.7E-05 33.8 3.2 27 47-73 173-199 (276)
92 PRK08260 enoyl-CoA hydratase; 86.7 0.7 1.5E-05 34.4 2.9 28 46-73 175-202 (296)
93 PRK09120 p-hydroxycinnamoyl Co 86.6 0.68 1.5E-05 34.1 2.8 29 46-74 166-194 (275)
94 PRK06142 enoyl-CoA hydratase; 86.5 0.98 2.1E-05 33.0 3.5 27 46-72 171-197 (272)
95 PRK05674 gamma-carboxygeranoyl 85.8 0.96 2.1E-05 33.1 3.2 28 46-73 162-189 (265)
96 PRK08272 enoyl-CoA hydratase; 84.9 1.1 2.3E-05 33.5 3.1 29 45-73 185-213 (302)
97 PRK12319 acetyl-CoA carboxylas 84.8 1.1 2.3E-05 33.4 3.1 33 54-87 196-228 (256)
98 PRK07468 enoyl-CoA hydratase; 84.8 1 2.2E-05 32.8 2.9 30 44-73 159-188 (262)
99 PRK07827 enoyl-CoA hydratase; 84.7 0.41 8.9E-06 34.8 0.8 26 46-71 162-187 (260)
100 KOG1680 Enoyl-CoA hydratase [L 84.5 0.59 1.3E-05 35.6 1.6 30 45-74 188-217 (290)
101 PRK07854 enoyl-CoA hydratase; 83.5 1.3 2.9E-05 32.0 3.0 26 45-70 147-172 (243)
102 COG1024 CaiD Enoyl-CoA hydrata 82.6 1 2.2E-05 32.7 2.1 26 48-73 162-187 (257)
103 TIGR03200 dearomat_oah 6-oxocy 82.5 1.8 3.8E-05 33.9 3.5 25 51-75 191-215 (360)
104 TIGR03222 benzo_boxC benzoyl-C 82.4 1.7 3.7E-05 35.6 3.5 41 34-74 426-467 (546)
105 PRK08184 benzoyl-CoA-dihydrodi 80.4 1.8 3.9E-05 35.4 3.1 26 48-73 192-217 (550)
106 PLN02157 3-hydroxyisobutyryl-C 77.5 1 2.3E-05 35.4 0.8 25 50-74 198-222 (401)
107 TIGR00513 accA acetyl-CoA carb 77.3 3.5 7.5E-05 31.8 3.6 22 53-74 248-269 (316)
108 PLN02874 3-hydroxyisobutyryl-C 76.6 1.6 3.5E-05 33.9 1.6 27 48-74 168-194 (379)
109 TIGR03222 benzo_boxC benzoyl-C 76.2 1.7 3.6E-05 35.7 1.7 22 52-73 192-213 (546)
110 KOG0016 Enoyl-CoA hydratase/is 76.0 1.3 2.9E-05 33.3 1.0 27 46-72 169-195 (266)
111 PRK05617 3-hydroxyisobutyryl-C 75.7 2.2 4.7E-05 32.6 2.1 29 46-74 161-189 (342)
112 COG1030 NfeD Membrane-bound se 73.5 6.8 0.00015 31.5 4.4 42 31-72 147-188 (436)
113 PLN03230 acetyl-coenzyme A car 72.9 5 0.00011 32.2 3.6 22 53-74 318-339 (431)
114 PRK11730 fadB multifunctional 72.7 4 8.7E-05 34.2 3.1 29 45-73 163-191 (715)
115 TIGR02440 FadJ fatty oxidation 72.5 4.1 9E-05 34.1 3.2 28 46-73 160-187 (699)
116 PF06972 DUF1296: Protein of u 70.2 9.3 0.0002 22.7 3.5 34 29-63 7-41 (60)
117 PRK06072 enoyl-CoA hydratase; 70.2 6.2 0.00013 28.5 3.3 23 47-69 151-173 (248)
118 PRK11154 fadJ multifunctional 70.0 5.1 0.00011 33.5 3.2 29 45-73 164-192 (708)
119 PRK08184 benzoyl-CoA-dihydrodi 70.0 2.7 5.8E-05 34.5 1.5 24 51-74 448-471 (550)
120 PRK05724 acetyl-CoA carboxylas 68.5 12 0.00027 28.8 4.8 21 53-73 248-268 (319)
121 PF07027 DUF1318: Protein of u 68.2 25 0.00055 22.4 5.5 38 12-49 34-71 (95)
122 CHL00198 accA acetyl-CoA carbo 68.1 6.3 0.00014 30.5 3.1 22 53-74 251-272 (322)
123 TIGR02675 tape_meas_nterm tape 67.5 22 0.00048 21.3 4.9 29 29-58 45-73 (75)
124 TIGR03427 ABC_peri_uca ABC tra 67.1 19 0.00041 27.4 5.5 36 28-63 226-262 (328)
125 TIGR02441 fa_ox_alpha_mit fatt 66.1 7.6 0.00016 32.8 3.5 27 46-72 172-198 (737)
126 PLN02988 3-hydroxyisobutyryl-C 65.3 4 8.7E-05 31.9 1.6 24 51-74 171-194 (381)
127 PLN02851 3-hydroxyisobutyryl-C 65.3 4.6 9.9E-05 32.0 1.9 25 50-74 203-227 (407)
128 TIGR02437 FadB fatty oxidation 64.7 7.6 0.00017 32.7 3.2 27 46-72 164-190 (714)
129 PF00681 Plectin: Plectin repe 63.6 3.7 7.9E-05 22.4 0.8 19 50-68 17-35 (45)
130 smart00250 PLEC Plectin repeat 63.5 5.5 0.00012 20.8 1.5 19 51-69 18-36 (38)
131 PF01381 HTH_3: Helix-turn-hel 62.9 22 0.00047 19.1 4.0 33 31-63 12-44 (55)
132 PF01972 SDH_sah: Serine dehyd 62.8 19 0.00041 27.5 4.7 45 22-66 192-242 (285)
133 TIGR03134 malonate_gamma malon 61.8 25 0.00054 25.9 5.1 39 37-75 152-192 (238)
134 PF14195 DUF4316: Domain of un 60.2 7.3 0.00016 23.8 1.8 28 62-89 15-52 (70)
135 PF14117 DUF4287: Domain of un 59.9 22 0.00048 21.0 3.8 34 29-62 4-38 (61)
136 PF08004 DUF1699: Protein of u 53.1 8.4 0.00018 26.2 1.3 50 7-58 74-123 (131)
137 PF12535 Nudix_N: Hydrolase of 49.6 11 0.00024 21.9 1.3 28 21-48 29-56 (58)
138 PRK09726 antitoxin HipB; Provi 48.9 59 0.0013 19.7 5.3 58 12-69 9-70 (88)
139 PF06056 Terminase_5: Putative 48.7 21 0.00045 20.6 2.4 26 31-56 16-41 (58)
140 PF00216 Bac_DNA_binding: Bact 48.5 31 0.00067 20.6 3.3 24 27-50 3-26 (90)
141 PF14420 Clr5: Clr5 domain 48.2 28 0.00061 19.6 2.8 38 21-59 3-40 (54)
142 smart00411 BHL bacterial (prok 46.8 32 0.0007 20.6 3.2 37 27-64 3-39 (90)
143 TIGR02792 PCA_ligA protocatech 46.5 22 0.00047 23.8 2.5 22 29-50 86-107 (117)
144 PRK11480 tauA taurine transpor 46.2 88 0.0019 23.1 6.0 33 31-63 249-281 (320)
145 PF13443 HTH_26: Cro/C1-type H 46.1 48 0.001 18.3 3.7 38 23-60 5-43 (63)
146 COG0825 AccA Acetyl-CoA carbox 46.0 27 0.0006 27.0 3.3 21 54-74 248-268 (317)
147 PRK13378 protocatechuate 4,5-d 44.5 25 0.00053 23.5 2.5 22 29-50 92-113 (117)
148 KOG1681 Enoyl-CoA isomerase [L 43.8 10 0.00022 28.7 0.6 22 53-74 196-217 (292)
149 PF01466 Skp1: Skp1 family, di 43.7 70 0.0015 19.0 6.7 48 14-61 17-67 (78)
150 cd02787 MopB_CT_ydeP The MopB_ 43.3 14 0.0003 23.2 1.1 16 53-68 33-48 (112)
151 PRK13377 protocatechuate 4,5-d 42.7 27 0.00058 23.7 2.5 22 29-50 92-113 (129)
152 TIGR03070 couple_hipB transcri 42.5 53 0.0012 17.3 4.3 32 31-62 18-49 (58)
153 cd07924 PCA_45_Doxase_A The A 42.2 27 0.00059 23.5 2.4 22 29-50 89-110 (121)
154 PF08671 SinI: Anti-repressor 41.4 25 0.00053 17.9 1.7 16 35-50 12-27 (30)
155 cd02791 MopB_CT_Nitrate-R-NapA 41.3 15 0.00033 23.0 1.1 25 44-68 27-52 (122)
156 PRK10219 DNA-binding transcrip 41.1 85 0.0018 19.2 4.6 53 15-67 23-84 (107)
157 TIGR02607 antidote_HigA addict 40.7 63 0.0014 18.5 3.7 32 31-62 21-52 (78)
158 cd02786 MopB_CT_3 The MopB_CT_ 39.9 17 0.00037 22.7 1.2 17 52-68 32-48 (116)
159 PF01568 Molydop_binding: Moly 39.8 13 0.00027 23.0 0.5 17 52-68 31-47 (110)
160 cd00591 HU_IHF Integration hos 39.4 49 0.0011 19.6 3.2 37 27-64 2-38 (87)
161 cd07925 LigA_like_1 The A subu 37.9 36 0.00079 22.3 2.5 22 29-50 81-102 (106)
162 smart00354 HTH_LACI helix_turn 37.7 70 0.0015 18.5 3.6 28 33-60 5-32 (70)
163 PF02742 Fe_dep_repr_C: Iron d 37.3 86 0.0019 18.2 4.6 45 17-61 5-50 (71)
164 cd02785 MopB_CT_4 The MopB_CT_ 37.3 20 0.00043 22.9 1.2 16 53-68 34-49 (124)
165 cd00508 MopB_CT_Fdh-Nap-like T 37.0 20 0.00044 22.2 1.2 16 53-68 37-52 (120)
166 cd02775 MopB_CT Molybdopterin- 36.6 20 0.00044 21.4 1.1 18 51-68 23-40 (101)
167 COG4671 Predicted glycosyl tra 36.6 17 0.00038 28.9 1.0 34 52-87 328-361 (400)
168 TIGR00673 cynS cyanate hydrata 35.8 58 0.0013 22.6 3.4 33 31-63 24-56 (150)
169 PRK02289 4-oxalocrotonate taut 35.1 11 0.00024 21.4 -0.2 37 21-57 15-54 (60)
170 PRK15418 transcriptional regul 34.7 1.5E+02 0.0033 22.4 5.8 60 19-87 20-79 (318)
171 TIGR02684 dnstrm_HI1420 probab 34.5 1.2E+02 0.0025 18.9 4.9 45 11-57 28-72 (89)
172 TIGR02297 HpaA 4-hydroxyphenyl 34.3 1.1E+02 0.0023 21.9 4.7 25 20-44 209-233 (287)
173 TIGR01729 taurine_ABC_bnd taur 34.2 1.8E+02 0.0038 20.9 7.0 30 31-60 227-256 (300)
174 PRK02866 cyanate hydratase; Va 34.1 1.3E+02 0.0028 20.7 4.9 33 31-63 21-53 (147)
175 cd02782 MopB_CT_1 The MopB_CT_ 34.0 24 0.00052 22.5 1.2 24 45-68 26-50 (129)
176 PF12833 HTH_18: Helix-turn-he 33.4 51 0.0011 19.0 2.5 47 21-67 3-59 (81)
177 PF10743 Phage_Cox: Regulatory 32.9 63 0.0014 20.5 2.9 22 31-52 15-36 (87)
178 cd07321 Extradiol_Dioxygenase_ 32.7 59 0.0013 19.7 2.7 22 32-53 27-48 (77)
179 cd02433 Nodulin-21_like_2 Nodu 32.7 1.4E+02 0.003 21.8 5.1 42 26-68 99-145 (234)
180 PF09675 Chlamy_scaf: Chlamydi 32.6 1.5E+02 0.0033 19.7 6.1 59 8-68 22-86 (114)
181 PF05920 Homeobox_KN: Homeobox 32.6 60 0.0013 17.2 2.5 18 32-49 17-34 (40)
182 PLN03229 acetyl-coenzyme A car 32.5 50 0.0011 28.5 3.1 21 53-73 339-359 (762)
183 COG3784 Uncharacterized protei 32.4 1.5E+02 0.0032 19.5 5.2 37 13-49 49-85 (109)
184 cd02434 Nodulin-21_like_3 Nodu 32.4 1.9E+02 0.0042 20.8 5.8 51 16-67 68-127 (225)
185 cd02781 MopB_CT_Acetylene-hydr 32.3 27 0.00059 22.2 1.2 16 53-68 35-50 (130)
186 COG0447 MenB Dihydroxynaphthoi 32.2 31 0.00067 26.0 1.6 20 55-74 187-206 (282)
187 cd02788 MopB_CT_NDH-1_NuoG2-N7 31.4 28 0.00061 21.4 1.1 16 53-68 31-46 (96)
188 PF00165 HTH_AraC: Bacterial r 31.3 81 0.0018 16.1 3.6 31 16-46 11-41 (42)
189 cd02778 MopB_CT_Thiosulfate-R- 31.1 29 0.00064 21.8 1.2 25 44-68 22-47 (123)
190 PF04539 Sigma70_r3: Sigma-70 31.0 1.1E+02 0.0024 17.6 4.7 18 33-50 25-42 (78)
191 cd02777 MopB_CT_DMSOR-like The 30.9 29 0.00062 22.2 1.2 17 52-68 35-51 (127)
192 CHL00139 rpl18 ribosomal prote 30.7 80 0.0017 20.5 3.2 31 57-88 71-101 (109)
193 cd01392 HTH_LacI Helix-turn-he 30.6 89 0.0019 16.4 3.6 27 34-60 3-29 (52)
194 cd02779 MopB_CT_Arsenite-Ox Th 30.6 29 0.00063 21.8 1.1 25 44-68 25-50 (115)
195 PF04033 DUF365: Domain of unk 30.6 47 0.001 21.4 2.1 23 41-63 28-50 (97)
196 PF03991 Prion_octapep: Copper 30.5 31 0.00068 12.5 0.7 8 5-12 1-8 (8)
197 PF00627 UBA: UBA/TS-N domain; 30.4 82 0.0018 15.9 3.3 30 32-63 7-36 (37)
198 TIGR01728 SsuA_fam ABC transpo 30.1 1.9E+02 0.004 20.0 5.3 33 24-56 215-247 (288)
199 cd02794 MopB_CT_DmsA-EC The Mo 30.1 49 0.0011 20.9 2.2 24 45-68 24-47 (121)
200 TIGR00987 himA integration hos 29.9 85 0.0018 19.3 3.2 37 27-64 4-40 (96)
201 cd02790 MopB_CT_Formate-Dh_H F 29.8 30 0.00066 21.3 1.1 16 53-68 37-52 (116)
202 TIGR02844 spore_III_D sporulat 29.4 1.3E+02 0.0028 18.5 3.9 32 27-58 18-50 (80)
203 PRK10753 transcriptional regul 29.4 89 0.0019 19.2 3.2 37 27-64 3-39 (90)
204 TIGR01117 mmdA methylmalonyl-C 29.4 53 0.0011 26.7 2.7 22 52-73 461-482 (512)
205 cd07921 PCA_45_Doxase_A_like S 28.9 69 0.0015 21.0 2.7 23 31-53 36-58 (106)
206 cd02792 MopB_CT_Formate-Dh-Na- 28.8 34 0.00073 21.4 1.2 25 44-68 27-52 (122)
207 PF01515 PTA_PTB: Phosphate ac 28.7 1.5E+02 0.0033 22.5 5.0 64 10-74 45-125 (319)
208 COG0256 RplR Ribosomal protein 28.6 94 0.002 20.9 3.4 33 55-88 85-117 (125)
209 PF12668 DUF3791: Protein of u 28.0 77 0.0017 18.1 2.6 23 29-51 6-28 (62)
210 cd02783 MopB_CT_2 The MopB_CT_ 28.0 34 0.00075 23.0 1.2 16 53-68 34-49 (156)
211 PF07037 DUF1323: Putative tra 28.0 55 0.0012 22.0 2.1 25 33-57 5-29 (122)
212 PRK10664 transcriptional regul 27.8 82 0.0018 19.4 2.8 24 27-50 3-26 (90)
213 PRK00230 orotidine 5'-phosphat 27.5 60 0.0013 23.3 2.5 33 53-86 189-221 (230)
214 PRK11511 DNA-binding transcrip 27.1 1.8E+02 0.0038 18.7 4.8 54 15-68 27-89 (127)
215 PF05049 IIGP: Interferon-indu 26.9 2.1E+02 0.0046 22.6 5.5 46 5-51 262-313 (376)
216 PRK01964 4-oxalocrotonate taut 26.7 94 0.002 17.4 2.8 29 21-49 15-43 (64)
217 PF06971 Put_DNA-bind_N: Putat 26.5 84 0.0018 17.6 2.5 34 16-49 11-49 (50)
218 PHA01971 hypothetical protein 26.4 26 0.00057 23.6 0.4 22 40-61 20-41 (123)
219 PF14991 MLANA: Protein melan- 26.2 21 0.00046 23.8 -0.1 21 51-71 17-37 (118)
220 PTZ00273 oxidase reductase; Pr 26.1 2.5E+02 0.0055 20.9 5.7 40 12-51 135-174 (320)
221 PRK15070 propanediol utilizati 25.8 49 0.0011 24.3 1.7 19 50-68 140-158 (211)
222 PF14467 DUF4426: Domain of un 25.0 45 0.00097 22.3 1.3 15 52-66 17-31 (122)
223 cd02784 MopB_CT_PHLH The MopB_ 25.0 42 0.00091 22.4 1.2 17 52-68 39-55 (137)
224 PLN02216 protein SRG1 25.0 2.6E+02 0.0057 21.4 5.7 40 13-52 168-207 (357)
225 cd02789 MopB_CT_FmdC-FwdD The 24.9 43 0.00093 21.0 1.2 16 53-68 33-48 (106)
226 cd02793 MopB_CT_DMSOR-BSOR-TMA 24.7 43 0.00094 21.5 1.2 16 53-68 35-50 (129)
227 PLN02704 flavonol synthase 24.7 2.8E+02 0.0061 21.0 5.8 42 12-53 155-196 (335)
228 PLN02276 gibberellin 20-oxidas 24.7 2.7E+02 0.0059 21.3 5.7 39 14-52 166-204 (361)
229 COG4001 Predicted metal-bindin 24.6 1.3E+02 0.0027 19.5 3.3 44 21-64 55-98 (102)
230 PF14048 MBD_C: C-terminal dom 24.6 1.7E+02 0.0037 18.6 3.9 24 11-34 73-96 (96)
231 PLN02912 oxidoreductase, 2OG-F 24.1 2.4E+02 0.0051 21.6 5.3 40 13-52 156-195 (348)
232 PF07553 Lipoprotein_Ltp: Host 24.0 1.4E+02 0.0031 16.6 3.5 32 30-61 9-42 (48)
233 cd00093 HTH_XRE Helix-turn-hel 23.8 1.1E+02 0.0023 15.0 3.8 33 31-63 15-47 (58)
234 PLN02515 naringenin,2-oxogluta 23.7 2.7E+02 0.0058 21.4 5.6 41 12-52 153-193 (358)
235 PF09832 DUF2059: Uncharacteri 23.7 1.5E+02 0.0032 16.6 3.4 24 24-49 3-26 (64)
236 PRK13502 transcriptional activ 23.5 2.3E+02 0.005 20.1 4.9 42 26-67 205-255 (282)
237 smart00530 HTH_XRE Helix-turn- 23.5 1.1E+02 0.0023 14.9 3.8 32 31-62 13-44 (56)
238 PF10668 Phage_terminase: Phag 23.5 85 0.0018 18.4 2.2 26 31-56 25-50 (60)
239 PF12085 DUF3562: Protein of u 23.3 1.4E+02 0.003 18.0 3.1 22 29-50 8-29 (66)
240 PF06152 Phage_min_cap2: Phage 23.3 1.3E+02 0.0028 23.3 3.8 36 17-52 50-85 (361)
241 PRK11553 alkanesulfonate trans 23.1 2.4E+02 0.0051 20.4 5.0 26 26-51 243-268 (314)
242 PF04867 DUF643: Protein of un 23.0 95 0.0021 20.5 2.5 18 32-49 44-61 (114)
243 PLN02904 oxidoreductase 22.7 3E+02 0.0066 21.1 5.6 41 12-52 166-206 (357)
244 PLN02639 oxidoreductase, 2OG-F 22.6 3.2E+02 0.0068 20.7 5.7 40 13-52 149-188 (337)
245 PF07700 HNOB: Heme NO binding 22.6 1.2E+02 0.0026 20.5 3.1 26 27-52 48-73 (171)
246 cd00086 homeodomain Homeodomai 22.4 1.2E+02 0.0026 16.1 2.6 21 29-49 28-48 (59)
247 PF08299 Bac_DnaA_C: Bacterial 22.3 1.8E+02 0.0038 17.0 3.7 31 23-53 29-60 (70)
248 PF13404 HTH_AsnC-type: AsnC-t 22.0 1.4E+02 0.0031 15.8 3.6 26 24-49 2-27 (42)
249 PRK13372 pcmA protocatechuate 21.9 81 0.0017 25.6 2.4 22 29-50 92-113 (444)
250 cd02432 Nodulin-21_like_1 Nodu 21.7 3.2E+02 0.0068 19.7 5.4 42 26-68 87-131 (218)
251 cd00763 Bacterial_PFK Phosphof 21.7 62 0.0014 24.7 1.7 71 10-88 136-207 (317)
252 PRK00285 ihfA integration host 21.5 1.5E+02 0.0033 18.2 3.2 37 27-64 5-41 (99)
253 KOG3230 Vacuolar assembly/sort 21.5 2.2E+02 0.0047 21.0 4.3 30 10-39 52-81 (224)
254 PLN02758 oxidoreductase, 2OG-F 21.5 2.9E+02 0.0062 21.2 5.3 40 13-52 170-209 (361)
255 PF00356 LacI: Bacterial regul 21.4 1.6E+02 0.0034 16.0 3.4 27 33-59 4-30 (46)
256 PF14444 S1-like: S1-like 21.4 30 0.00064 20.4 -0.1 8 62-69 14-21 (58)
257 PF08383 Maf_N: Maf N-terminal 21.2 63 0.0014 17.1 1.1 15 49-63 16-31 (35)
258 KOG3229 Vacuolar sorting prote 21.1 2E+02 0.0043 21.3 4.1 29 10-38 54-82 (227)
259 KOG0352 ATP-dependent DNA heli 20.8 52 0.0011 27.3 1.1 53 15-67 73-131 (641)
260 PRK00982 acpP acyl carrier pro 20.6 77 0.0017 18.3 1.6 24 24-47 2-25 (78)
261 PRK00745 4-oxalocrotonate taut 20.6 1.7E+02 0.0036 16.1 3.0 29 21-49 15-43 (62)
262 PRK13500 transcriptional activ 20.4 2.7E+02 0.006 20.4 4.9 48 20-67 229-285 (312)
263 PF14555 UBA_4: UBA-like domai 20.2 1.5E+02 0.0033 15.5 2.7 34 29-63 2-35 (43)
264 COG5201 SKP1 SCF ubiquitin lig 20.0 1.2E+02 0.0026 21.0 2.6 32 30-61 114-146 (158)
265 TIGR00515 accD acetyl-CoA carb 20.0 87 0.0019 23.7 2.1 23 52-74 245-267 (285)
266 PRK05654 acetyl-CoA carboxylas 20.0 1.2E+02 0.0026 23.0 2.9 22 52-73 246-267 (292)
No 1
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.96 E-value=6.3e-29 Score=177.64 Aligned_cols=75 Identities=45% Similarity=0.753 Sum_probs=73.1
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
|||||+|+++|+++|++++|+++++++..+.++|+++||++.++|..+|+||+||||+||++|||||+|++....
T Consensus 121 mIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~ 195 (200)
T COG0740 121 MIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREA 195 (200)
T ss_pred EEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceecccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 2
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=99.95 E-value=3.1e-28 Score=176.46 Aligned_cols=75 Identities=36% Similarity=0.635 Sum_probs=72.6
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
|||||+++++|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++...
T Consensus 143 MIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~~ 217 (222)
T PRK12552 143 VLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRKD 217 (222)
T ss_pred EeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCCc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999987643
No 3
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.95 E-value=1.4e-27 Score=170.92 Aligned_cols=77 Identities=30% Similarity=0.538 Sum_probs=74.0
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPE 77 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~~~ 77 (91)
|||||+++++|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++.+...
T Consensus 121 MIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~~~~~~~~ 197 (201)
T PRK14513 121 MIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVIEPTRVKR 197 (201)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEeccCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876543
No 4
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.94 E-value=5.1e-27 Score=170.02 Aligned_cols=73 Identities=41% Similarity=0.689 Sum_probs=71.4
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
|||||++++.|+++|+++++++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|++++
T Consensus 148 MiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 148 MIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred EeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999864
No 5
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.94 E-value=6.4e-27 Score=166.80 Aligned_cols=74 Identities=41% Similarity=0.624 Sum_probs=72.1
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|||||++++.|+++|+++++++|+++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus 119 MIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I~~~~~ 192 (196)
T PRK12551 119 MIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKRP 192 (196)
T ss_pred EEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEEeccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999764
No 6
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-26 Score=169.12 Aligned_cols=75 Identities=45% Similarity=0.692 Sum_probs=72.7
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
|||||.+++.|++.|+.++|+|+.++++.+.++|+++||+|.|+|.++|+||+||||+||+||||||.|++.+..
T Consensus 186 MIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGliD~v~~~p~~ 260 (275)
T KOG0840|consen 186 MIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLIDKVIDHPPE 260 (275)
T ss_pred EEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcchhhhhcCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999997543
No 7
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=99.93 E-value=8.6e-26 Score=161.37 Aligned_cols=74 Identities=32% Similarity=0.555 Sum_probs=71.6
Q ss_pred CCCCCCcc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGR-IEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~-~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|||||+++ +.|+++|+++++++|+++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++..
T Consensus 124 miHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 124 MIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred EEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 89999998 899999999999999999999999999999999999999999999999999999999999998654
No 8
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=99.91 E-value=1.5e-24 Score=153.55 Aligned_cols=71 Identities=46% Similarity=0.709 Sum_probs=69.6
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
|||||+++++|++.|+++++++|+++++.+.++|+++||+|.++|.++|++|+||||+||++|||||+|++
T Consensus 120 miH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 120 MIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred EEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 89999999999999999999999999999999999999999999999999999999999999999999986
No 9
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=99.91 E-value=2.3e-24 Score=153.47 Aligned_cols=73 Identities=36% Similarity=0.593 Sum_probs=71.0
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
|||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.
T Consensus 117 miHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 117 LLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEVVETR 189 (197)
T ss_pred EEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEeecCc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999864
No 10
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.90 E-value=1.3e-23 Score=149.62 Aligned_cols=74 Identities=46% Similarity=0.741 Sum_probs=71.8
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|||||+++++|+++|++.++++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+++.+
T Consensus 125 mih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 125 MIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred EeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998754
No 11
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.88 E-value=9.7e-23 Score=140.78 Aligned_cols=69 Identities=41% Similarity=0.660 Sum_probs=67.7
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I 69 (91)
|||||+++..|++.|+++.+++++++++.+.++|+++||++.++|.++|++++||||+||++|||||+|
T Consensus 94 ~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 94 MIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred EEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCCcC
Confidence 799999999999999999999999999999999999999999999999999999999999999999986
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=99.86 E-value=1.6e-21 Score=139.60 Aligned_cols=74 Identities=36% Similarity=0.694 Sum_probs=70.9
Q ss_pred CCCCCC--ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPI--GRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~--~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|||||+ +++.|++.|+++++++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|+++..
T Consensus 129 miH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~ 204 (207)
T PRK12553 129 LIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEEAKDYGLVDQIITSYR 204 (207)
T ss_pred hhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHHHHHcCCccEEcCchh
Confidence 899999 67899999999999999999999999999999999999999999999999999999999999998754
No 13
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=99.86 E-value=5e-22 Score=138.03 Aligned_cols=73 Identities=32% Similarity=0.589 Sum_probs=68.6
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
|+|+|+.++.|+++++...++.+++.++.+.++|+++||++.++|.++|+||+||||+||++|||||+|++++
T Consensus 110 m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 110 MIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIESR 182 (182)
T ss_dssp EES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS-
T ss_pred EeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999863
No 14
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=99.85 E-value=1.8e-21 Score=135.10 Aligned_cols=69 Identities=48% Similarity=0.781 Sum_probs=67.7
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I 69 (91)
|+|+|+++..|+++|++..++++.++++.+.++|+++||++.++|.++|++++||||+||++|||||+|
T Consensus 103 ~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 103 MIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 799999999999999999999999999999999999999999999999999999999999999999986
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.63 E-value=1.1e-15 Score=104.31 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=66.9
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I 69 (91)
|+|+|+++..|+..++....++++++++.+.+.|++++|++.+++..++.+++||+|+||+++||||+|
T Consensus 92 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~GliD~v 160 (160)
T cd07016 92 MIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFADEI 160 (160)
T ss_pred EEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCCCcC
Confidence 579999999999999999999999999999999999999999999999999999999999999999986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.46 E-value=1.6e-13 Score=96.27 Aligned_cols=67 Identities=24% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCCCccCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 1 MIKQPIGRIEGQ-----ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 1 MIHqP~~~~~G~-----a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
++|+|.++ .|+ +.|.+..+.++.++|. |++++|++.+.++++++|++||||+||++|||||.|..+.
T Consensus 95 G~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~ 166 (172)
T cd07015 95 GACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDI 166 (172)
T ss_pred EEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCH
Confidence 46899765 366 7788999999998887 9999999999999999999999999999999999998763
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.42 E-value=3.7e-13 Score=91.36 Aligned_cols=69 Identities=32% Similarity=0.503 Sum_probs=63.1
Q ss_pred CCCCCCccCCcCH--HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCccee
Q 039249 1 MIKQPIGRIEGQA--TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 1 MIHqP~~~~~G~a--~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I 69 (91)
|+|+|+++..|.. .+.....+.++.+.+.+.+.+++++|.+.+++.+++.++.||||+||+++||||+|
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 91 GSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred EEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCcCcC
Confidence 5799987766554 78888889999999999999999999999999999999999999999999999986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=98.90 E-value=5.5e-09 Score=73.27 Aligned_cols=71 Identities=20% Similarity=0.325 Sum_probs=55.5
Q ss_pred CCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 2 IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 2 IHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
+|.|.++..+...+.....+.+..+.. ....|++++|++.+.+.+++.+++||||+||+++||||+|.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~ 166 (187)
T cd07020 96 AAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADL 166 (187)
T ss_pred eccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCH
Confidence 466664433333445555666666664 58889999999999999999999999999999999999998764
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=98.76 E-value=2.9e-08 Score=69.75 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=50.1
Q ss_pred CCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCC-------------cCCHHHHHHcCCcce
Q 039249 2 IKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPK-------------YFSPSEAVEYGIMDK 68 (91)
Q Consensus 2 IHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~-------------wmta~EA~eyGliD~ 68 (91)
.|.|.....|++.+ +.+...-....+.|++++|++.+.+++++++++ |||++||+++||+|.
T Consensus 93 ~~~~v~~~~~~~~~-----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ 167 (178)
T cd07021 93 AAEPIPGDGNGAAD-----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEG 167 (178)
T ss_pred cCeeEcCCCccchh-----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEE
Confidence 46676554443322 223333344566799999999999999999995 999999999999999
Q ss_pred eecCC
Q 039249 69 VLYTE 73 (91)
Q Consensus 69 I~~~~ 73 (91)
|..+.
T Consensus 168 ia~~~ 172 (178)
T cd07021 168 IAGSL 172 (178)
T ss_pred EECCH
Confidence 97653
No 20
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=98.41 E-value=1.2e-06 Score=60.70 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 19 ARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 19 ~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.-..++.+.+.+.+.++++.|++.+.+.+++....||+|+||+++||||+|...
T Consensus 116 ~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~ 169 (177)
T cd07014 116 DQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSF 169 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCH
Confidence 345788889999999999999999999999999999999999999999998753
No 21
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.94 E-value=4.9e-05 Score=54.03 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 14 TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 14 ~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+-...-..|+.+.+.+.+..++.-|++.++++++++...| +|++|+++||||+|...
T Consensus 138 ~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~-~~~~A~~~gLvD~i~~~ 195 (207)
T TIGR00706 138 EERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVF-TGRQALKLRLVDKLGTE 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCCH
Confidence 34445556778888899999999999999999999988775 99999999999999653
No 22
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.88 E-value=5.1e-05 Score=53.70 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
..+-......|+.+.+.+.+..+++-|++.+++.++.+...| +|++|+++||||+|..
T Consensus 142 ~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~ 199 (208)
T cd07023 142 EEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGG 199 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCC
Confidence 346666677889999999999999999999999999888776 7999999999999975
No 23
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.87 E-value=6.4e-05 Score=53.61 Aligned_cols=57 Identities=23% Similarity=0.211 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
..+-+..-+.|+.+.+.+.+.++++.|.+.+++.+.+ ...|++++|+++||||+|..
T Consensus 149 ~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~ 205 (214)
T cd07022 149 DEARARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGT 205 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCC
Confidence 4455666677889999999999999999999999988 66689999999999999865
No 24
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=97.83 E-value=8.4e-05 Score=52.97 Aligned_cols=54 Identities=22% Similarity=0.212 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
......++.+.+.+.+..++..|++++++.+..+ ..+++++||+++||||+|..
T Consensus 149 ~~~~~~ld~~~~~f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~ 202 (211)
T cd07019 149 LGLQLSIENGYKRFITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGD 202 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCC
Confidence 3344578999999999999999999999999664 67999999999999999865
No 25
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=97.70 E-value=0.00015 Score=49.32 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
+-...-+.|+.+.+...+..++.-|.+.+++.++.+. ..|++++|+++||||+|-.
T Consensus 84 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~ 139 (154)
T PF01343_consen 84 ERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGT 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCC
Confidence 3344456778888889999999999999999999887 7778999999999999854
No 26
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.57 E-value=0.0003 Score=57.25 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVL 70 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~ 70 (91)
+..+.......++.+.+...+..++.-|++.+++..+.+...| |++||+++||||+|-
T Consensus 452 t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig 509 (584)
T TIGR00705 452 TAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALG 509 (584)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCC
Confidence 5677788888899999999999999999999999999988776 999999999999983
No 27
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=96.86 E-value=0.0067 Score=43.47 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
+-...-..++.+.+.+.+..++.-|.+.+.+.+..+ ..-+++++|++.||||+|..
T Consensus 157 ~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~-~~~~~~~~A~~~GLvD~i~~ 212 (222)
T cd07018 157 AREQTQALLDSLWDQYLADVAASRGLSPDALEALID-LGGDSAEEALEAGLVDGLAY 212 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-cCCcHHHHHHHCCCCCcCCc
Confidence 334444566778888888888888999999998887 66889999999999999864
No 28
>PRK10949 protease 4; Provisional
Probab=95.74 E-value=0.048 Score=45.07 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
+-...-..++...+...+.-++.-|++.+++.+..+ ..-+|+++|++.||||++-.
T Consensus 473 ~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~-Grv~tg~~A~~~GLVD~lG~ 528 (618)
T PRK10949 473 FQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGD 528 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhc-CCcccHHHHHHcCCCccCCC
Confidence 334444567777888888888888999999988654 46789999999999999854
No 29
>PRK11778 putative inner membrane peptidase; Provisional
Probab=95.08 E-value=0.077 Score=40.89 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
+-...-..|+.+.+...+..+++-+ ...+.+..+.. .+++++|+++||||+|-..
T Consensus 232 ~Re~~q~~Ld~~y~~F~~~Va~~R~--~l~~~~va~G~-v~~g~~Al~~GLVD~Ig~~ 286 (330)
T PRK11778 232 GREKFREELEETHQLFKDFVQRYRP--QLDIDKVATGE-HWYGQQALELGLVDEIQTS 286 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--cCCHHHHHhCC-CcCHHHHHHCCCCCcCCCH
Confidence 3344455666677777777665433 23344444444 5699999999999998664
No 30
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=94.18 E-value=0.2 Score=41.09 Aligned_cols=56 Identities=5% Similarity=-0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCc-------CCHHHHHHcCCcceeecC
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKY-------FSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~w-------mta~EA~eyGliD~I~~~ 72 (91)
...-..|+.+-..+.+..++.-+.+.+++....+.=.| .+|++|++.||||+|...
T Consensus 207 e~~~~~l~~l~~~f~~~Va~~R~l~~~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~ 269 (584)
T TIGR00705 207 RNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSY 269 (584)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCH
Confidence 34445667788888888888889999999988776555 389999999999999653
No 31
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=93.87 E-value=0.033 Score=39.82 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=23.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
...++-...++||+||+++||||+|+.++
T Consensus 153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~ 181 (229)
T PRK06213 153 FQRAVINAEMFDPEEAVAAGFLDEVVPPE 181 (229)
T ss_pred HHHHHHcCcccCHHHHHHCCCceeccChH
Confidence 45566677789999999999999998643
No 32
>PRK05869 enoyl-CoA hydratase; Validated
Probab=93.34 E-value=0.07 Score=38.24 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=23.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..+++-.-.++||+||.++||+|+|+++..
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 189 (222)
T PRK05869 160 AKELVFSGRFFDAEEALALGLIDEMVAPDD 189 (222)
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCchH
Confidence 345555566999999999999999987543
No 33
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=92.84 E-value=0.41 Score=36.34 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
+-...-.+++...+.+.+..++..+.+.+++.. ......+++++|++.||||++-+.
T Consensus 206 ~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~-~a~g~v~~g~~A~~~gLVDelg~~ 262 (317)
T COG0616 206 EREILQKEIDETYDEFVDKVAEGRGLSDEAVDK-LATGRVWTGQQALELGLVDELGGL 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHH-HhccceecHHHhhhcCCchhcCCH
Confidence 334444688888889999999999988888544 445566689999999999998653
No 34
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=92.77 E-value=0.084 Score=38.38 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++-....++|+||+++||||+|+.+..
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 184 (257)
T PRK05862 156 MDLCLTGRMMDAAEAERAGLVSRVVPADK 184 (257)
T ss_pred HHHHHhCCccCHHHHHHcCCCCEeeCHhH
Confidence 44444556899999999999999987543
No 35
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=92.76 E-value=0.095 Score=38.20 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=23.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-..++-.-..+||+||.++||||+|+.+.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAG 183 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHh
Confidence 34555566789999999999999998754
No 36
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=92.51 E-value=0.097 Score=38.24 Aligned_cols=29 Identities=14% Similarity=0.330 Sum_probs=23.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..+++=.-..++|+||.++||||+|+.+.
T Consensus 164 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 192 (262)
T PRK06144 164 VKDMLFTARLLEAEEALAAGLVNEVVEDA 192 (262)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCeecCHH
Confidence 34555566789999999999999998764
No 37
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=92.40 E-value=0.11 Score=37.76 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=24.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++-....|||+||+++||||+|+....
T Consensus 154 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~ 183 (254)
T PRK08259 154 AMDLILTGRPVDADEALAIGLANRVVPKGQ 183 (254)
T ss_pred HHHHHHcCCccCHHHHHHcCCCCEeeChhH
Confidence 355555667899999999999999987654
No 38
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=92.19 E-value=0.16 Score=36.99 Aligned_cols=30 Identities=17% Similarity=0.198 Sum_probs=24.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
...++=.-..|+|+||+++||||+|+++..
T Consensus 161 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 190 (263)
T PRK07799 161 ACDLLLTGRHITAAEAKEIGLIGHVVPDGQ 190 (263)
T ss_pred HHHHHHcCCCCCHHHHHHcCCccEecCcch
Confidence 355555667899999999999999987654
No 39
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=91.87 E-value=0.15 Score=37.11 Aligned_cols=29 Identities=7% Similarity=0.167 Sum_probs=23.1
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++=.-..|||+||.++||||+|+....
T Consensus 154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK08150 154 TDMMLTGRVYDAQEGERLGLAQYLVPAGE 182 (255)
T ss_pred HHHHHcCCcCCHHHHHHcCCccEeeCchH
Confidence 44555566799999999999999988654
No 40
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=91.73 E-value=0.13 Score=37.60 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
...++-....++|+||+++||||+|+++..
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 184 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAE 184 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhH
Confidence 445555567899999999999999987543
No 41
>PRK08139 enoyl-CoA hydratase; Validated
Probab=91.71 E-value=0.17 Score=37.15 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=23.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++=-...++|+||+++||||+|+.+..
T Consensus 164 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 193 (266)
T PRK08139 164 AMEMLLTGEFIDAATAREWGLVNRVVPADA 193 (266)
T ss_pred HHHHHHcCCccCHHHHHHcCCccEeeChhH
Confidence 345555566789999999999999987543
No 42
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=91.68 E-value=0.44 Score=32.46 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=27.3
Q ss_pred HHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 33 LYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+.++.| ......++-....++++||+++||+|+|++.
T Consensus 144 ~l~~~~g--~~~a~~~~l~g~~~~a~ea~~~Glv~~~~~~ 181 (195)
T cd06558 144 RLPRLVG--PARARELLLTGRRISAEEALELGLVDEVVPD 181 (195)
T ss_pred HHHHHhC--HHHHHHHHHcCCccCHHHHHHcCCCCeecCh
Confidence 3444444 3334455556788899999999999999875
No 43
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=91.66 E-value=0.12 Score=37.69 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=22.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=-...|||+||+++||||+|+....
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK09245 165 AEMAFTGDAIDAATALEWGLVSRVVPADQ 193 (266)
T ss_pred HHHHHcCCCcCHHHHHHcCCcceecCHHH
Confidence 34444566899999999999999987543
No 44
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=91.64 E-value=0.13 Score=37.41 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=22.4
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++-....|+|+||+++||||+|+.++
T Consensus 154 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 181 (255)
T PRK06563 154 MRYLLTGDEFDAQEALRLGLVQEVVPPG 181 (255)
T ss_pred HHHHHcCCCcCHHHHHHcCCCcEeeCHH
Confidence 3455555679999999999999998754
No 45
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=91.63 E-value=0.19 Score=36.63 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=23.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=....++|+||+++||||+|+.+..
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 185 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGE 185 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchh
Confidence 44555567889999999999999987653
No 46
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=91.57 E-value=0.13 Score=37.47 Aligned_cols=30 Identities=13% Similarity=0.114 Sum_probs=24.5
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
...+++-.-..+||+||.++||||+|+.+.
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPPE 183 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCHH
Confidence 345666667889999999999999998754
No 47
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=91.55 E-value=0.21 Score=36.39 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=23.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
...++=.-..++|+||+++||||+|+++.
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 188 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLA 188 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHH
Confidence 45555566789999999999999998754
No 48
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=91.47 E-value=0.16 Score=36.72 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=23.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||+++||||+|+++..
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 184 (257)
T PRK07658 156 LEMMLTSEPITGAEALKWGLVNGVFPEET 184 (257)
T ss_pred HHHHHcCCCcCHHHHHHcCCcCeecChhH
Confidence 44555667899999999999999986543
No 49
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=91.46 E-value=0.19 Score=36.53 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++-.-.-++|+||+++||||+|++++.
T Consensus 159 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 188 (260)
T PRK07511 159 ATELLLEGKPISAERLHALGVVNRLAEPGQ 188 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCccEeeCchH
Confidence 445555667899999999999999987543
No 50
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=91.35 E-value=0.13 Score=37.73 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=23.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++-.-..|||+||+++||||+|+.+..
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 196 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDE 196 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 444555666899999999999999986543
No 51
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=91.19 E-value=0.15 Score=37.10 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++--...++|+||+++||||+|+.+.
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 189 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHE 189 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHH
Confidence 4455556789999999999999998754
No 52
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=91.07 E-value=0.15 Score=36.94 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..+++=....+||+||+++||||+|+++..
T Consensus 159 a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~ 188 (255)
T PRK07260 159 ATHLAMTGEALTAEKALEYGFVYRVAESEK 188 (255)
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecCHhH
Confidence 455666678999999999999999986543
No 53
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=90.87 E-value=0.23 Score=36.05 Aligned_cols=30 Identities=10% Similarity=0.131 Sum_probs=23.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++=...-++|+||.++||||+|+.+..
T Consensus 152 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 181 (254)
T PRK08252 152 AMELALTGDMLTAERAHELGLVNRLTEPGQ 181 (254)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCcch
Confidence 455555566799999999999999987543
No 54
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=90.81 E-value=0.16 Score=37.84 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=23.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-..++=.-..++|+||.++||||+|+.+.
T Consensus 177 A~~llltG~~i~A~eA~~~GLV~~vv~~~ 205 (288)
T PRK08290 177 AKELLFTGDRLTADEAHRLGMVNRVVPRD 205 (288)
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEeeCHH
Confidence 34455566789999999999999998754
No 55
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=90.77 E-value=0.15 Score=36.92 Aligned_cols=28 Identities=29% Similarity=0.211 Sum_probs=21.9
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++---..++|+||.++||||+|++.+
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEE 186 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHH
Confidence 3344455679999999999999998654
No 56
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=90.59 E-value=0.15 Score=37.31 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=23.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++=.-..++|+||+++||||+|++++
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~ 185 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVE 185 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHH
Confidence 34455556789999999999999998654
No 57
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=90.57 E-value=0.21 Score=36.28 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++-.-.-|+|+||.++||||+|+.++.
T Consensus 153 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 182 (255)
T PRK09674 153 ASQMVLTGESITAQQAQQAGLVSEVFPPEL 182 (255)
T ss_pred HHHHHHcCCccCHHHHHHcCCCcEecChHH
Confidence 345555566799999999999999986543
No 58
>PLN02600 enoyl-CoA hydratase
Probab=90.51 E-value=0.22 Score=36.18 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=23.1
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=.-..++|+||.++||||+|+.+..
T Consensus 150 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 178 (251)
T PLN02600 150 KELIFTGRRIGAREAASMGLVNYCVPAGE 178 (251)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEeeChhH
Confidence 44555566899999999999999987543
No 59
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=90.48 E-value=0.11 Score=37.83 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=22.4
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVL 70 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~ 70 (91)
....++-.-..|+|+||+++||||+|+
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~Glv~~vv 184 (260)
T PRK07659 158 KAKQIIWEGKKLSATEALDLGLIDEVI 184 (260)
T ss_pred HHHHHHHhCCccCHHHHHHcCChHHHh
Confidence 345566666789999999999999998
No 60
>PLN02921 naphthoate synthase
Probab=90.41 E-value=0.18 Score=38.50 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=23.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-.-..|+|+||.++||||+|+....
T Consensus 222 A~ellltG~~~~A~eA~~~GLV~~vv~~~~ 251 (327)
T PLN02921 222 AREMWFLARFYTASEALKMGLVNTVVPLDE 251 (327)
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEEeCHHH
Confidence 345555667899999999999999987543
No 61
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=90.17 E-value=0.22 Score=36.49 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=23.5
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.-.+++-.-..++|+||+++||||+|+.+.
T Consensus 154 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (258)
T PRK06190 154 RARRMSLTGDFLDAADALRAGLVTEVVPHD 183 (258)
T ss_pred HHHHHHHhCCccCHHHHHHcCCCeEecCHh
Confidence 344555566689999999999999998654
No 62
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=89.80 E-value=0.42 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.162 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-...-+||+||+++||||+|+.+..
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 188 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQ 188 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchH
Confidence 344555556799999999999999986543
No 63
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=89.74 E-value=0.36 Score=35.03 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=23.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++=.-..++|+||+++||||+|+.+.
T Consensus 152 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 180 (249)
T PRK07938 152 MRALFFTAATITAAELHHFGSVEEVVPRD 180 (249)
T ss_pred HHHHHHhCCcCCHHHHHHCCCccEEeCHH
Confidence 45555566789999999999999998754
No 64
>PLN02888 enoyl-CoA hydratase
Probab=89.65 E-value=0.4 Score=35.16 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=22.6
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-..++=.-..++|+||+++||||+|+.+.
T Consensus 160 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 188 (265)
T PLN02888 160 AREVSLTAMPLTAETAERWGLVNHVVEES 188 (265)
T ss_pred HHHHHHhCCccCHHHHHHcCCccEeeChH
Confidence 34444455688999999999999998654
No 65
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=89.56 E-value=0.36 Score=35.52 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..+++-.-..|+|+||+++||||+|+.+.
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLA 196 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHH
Confidence 44555556689999999999999998753
No 66
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=89.56 E-value=0.17 Score=36.24 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=21.9
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.++=.-.-++|+||+++||||+|+++..
T Consensus 153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 180 (245)
T PF00378_consen 153 ELLLTGEPISAEEALELGLVDEVVPDEE 180 (245)
T ss_dssp HHHHHTCEEEHHHHHHTTSSSEEESGGG
T ss_pred ccccccccchhHHHHhhcceeEEcCchh
Confidence 3333445789999999999999988665
No 67
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=89.45 E-value=0.37 Score=34.94 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=24.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..+++-.-.-++|+||+++||||+|++++.
T Consensus 155 a~~llltg~~~~a~eA~~~Glv~~vv~~~~ 184 (249)
T PRK07110 155 GQEMLLTARYYRGAELKKRGVPFPVLPRAE 184 (249)
T ss_pred HHHHHHcCCccCHHHHHHcCCCeEEeChHH
Confidence 455666677899999999999999987543
No 68
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=89.43 E-value=0.3 Score=35.52 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++-.-.-++|+||+++||||+|+.+..
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK07657 159 KELIYTGRRISAQEAKEIGLVEFVVPAHL 187 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCeecCHHH
Confidence 34444455699999999999999987544
No 69
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=89.25 E-value=0.27 Score=35.59 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=21.1
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.++--...++|+||+++||||+|+++.
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~ 185 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPAA 185 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHH
Confidence 334345579999999999999998753
No 70
>PRK08788 enoyl-CoA hydratase; Validated
Probab=89.19 E-value=0.51 Score=35.36 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..+++-...-|+|+||.++||||+|+++.
T Consensus 182 A~ellltG~~l~A~eA~~~GLV~~vv~~~ 210 (287)
T PRK08788 182 AEELILSGKLYTAEELHDMGLVDVLVEDG 210 (287)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCch
Confidence 45556667789999999999999998754
No 71
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=89.12 E-value=0.47 Score=34.49 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=22.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
...++-...-++|+||+++||||+|+.+
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 183 (255)
T PRK07112 156 AHYMTLMTQPVTAQQAFSWGLVDAYGAN 183 (255)
T ss_pred HHHHHHhCCcccHHHHHHcCCCceecCc
Confidence 3445555567999999999999999764
No 72
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=88.88 E-value=0.5 Score=34.79 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=22.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++=.-..++|+||+++||||+|+.+.
T Consensus 175 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 203 (277)
T PRK08258 175 ASELLYTGRSMSAEEGERWGFFNRLVEPE 203 (277)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCcEecCHH
Confidence 34455556789999999999999998653
No 73
>PRK10949 protease 4; Provisional
Probab=88.86 E-value=2.6 Score=35.02 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-------CCcCCHHHHHHcCCcceeecC
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-------d~wmta~EA~eyGliD~I~~~ 72 (91)
..|+.+-+.+.+..++.=+.+.+.+....++ -.-++|++|++.||||+|...
T Consensus 230 ~ll~~l~~~f~~~VA~~R~l~~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~ 288 (618)
T PRK10949 230 RWIGELWQNYLNTVAANRQITPQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASS 288 (618)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCH
Confidence 4567777788888888888999998643332 123699999999999999654
No 74
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=88.81 E-value=0.25 Score=35.90 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
....++-....++|+||.++||||+|++
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 162 VARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred HHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 3455555667899999999999999974
No 75
>PRK08321 naphthoate synthase; Validated
Probab=88.64 E-value=0.33 Score=36.32 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-..++=.-.-|+|+||.++||||+|+++..
T Consensus 197 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~ 226 (302)
T PRK08321 197 AREIFFLGRTYSAEEAHDMGAVNAVVPHAE 226 (302)
T ss_pred HHHHHHcCCccCHHHHHHCCCceEeeCHHH
Confidence 345555667899999999999999987543
No 76
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=88.55 E-value=0.31 Score=35.50 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=22.7
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=.-.-|||+||.++||||+|++...
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 193 (266)
T PRK05981 165 MELSLLGEKLPAETALQWGLVNRVVDDAE 193 (266)
T ss_pred HHHHHhCCCcCHHHHHHcCCceEeeCHhH
Confidence 44444556799999999999999987543
No 77
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=88.35 E-value=0.57 Score=34.31 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..+++-.-..++|+||.++||||+|++..
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 195 (269)
T PRK06127 167 AKDLFYTARRFDAAEALRIGLVHRVTAAD 195 (269)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEeeCHH
Confidence 35555566789999999999999998644
No 78
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=88.22 E-value=0.33 Score=35.35 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.2
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.++---.-++|+||.++||||+|+...
T Consensus 157 ~lll~g~~~~a~eA~~~Glv~~vv~~~ 183 (256)
T TIGR03210 157 EIWYLCRRYTAQEALAMGLVNAVVPHD 183 (256)
T ss_pred HHHHhCCCcCHHHHHHcCCceeeeCHH
Confidence 334345679999999999999998754
No 79
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=88.17 E-value=0.55 Score=34.13 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-.-.-++|+||+++||||+|+.+.
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 187 (262)
T PRK05995 159 ARRYFLTAERFDAAEALRLGLVHEVVPAE 187 (262)
T ss_pred HHHHHHcCCccCHHHHHHcCCCCeecCHH
Confidence 34455455668999999999999998643
No 80
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=88.17 E-value=0.66 Score=33.74 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 35 AKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 35 a~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.++.|.+ ....++=.-.-++|+||+++||||+|+++
T Consensus 141 ~~~vg~~--~a~~l~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 141 PERMGRV--AAEDLLYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHHhCHH--HHHHHHHcCCCCCHHHHHHCCCcceecCc
Confidence 3444433 34555555556999999999999999853
No 81
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=88.02 E-value=0.71 Score=33.93 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=21.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+++=....++|+||+++||||+|+.+
T Consensus 173 ~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 173 MELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred HHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 344445678999999999999999874
No 82
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=88.00 E-value=0.83 Score=33.81 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=23.8
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.-.+++-...-|+|+||.++||||+|+...
T Consensus 168 ~a~~llltg~~~~a~eA~~~Glv~~vv~~~ 197 (278)
T PLN03214 168 VAESLLLRGRLVRPAEAKQLGLIDEVVPAA 197 (278)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCcEecChH
Confidence 345566666779999999999999998653
No 83
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=87.65 E-value=0.69 Score=33.59 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=22.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++-.-.-++|+||.++||||+|+....
T Consensus 161 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 189 (262)
T PRK08140 161 LGLALLGEKLSAEQAEQWGLIWRVVDDAA 189 (262)
T ss_pred HHHHHcCCCcCHHHHHHcCCccEeeChHH
Confidence 44555566799999999999999987543
No 84
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=87.62 E-value=0.66 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=23.7
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
...+++=...-++|+||+++||||+|+.+.
T Consensus 168 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 197 (272)
T PRK06210 168 NALDLLLSARTFYAEEALRLGLVNRVVPPD 197 (272)
T ss_pred HHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 345555566778999999999999998653
No 85
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=87.57 E-value=0.56 Score=33.94 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.0
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.++-.-..|+|+||.++||||+|+.+
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCC
Confidence 45556678999999999999999864
No 86
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=87.45 E-value=0.56 Score=35.09 Aligned_cols=31 Identities=10% Similarity=0.120 Sum_probs=25.3
Q ss_pred HHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..-.+++=-...++|+||.++||||+|+.+.
T Consensus 168 ~~A~~llltg~~i~A~eA~~~GLV~~vv~~~ 198 (298)
T PRK12478 168 AKVKWHSLTGRPLTGVQAAEAELINEAVPFE 198 (298)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCHH
Confidence 3445666677899999999999999998754
No 87
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=87.24 E-value=0.75 Score=33.37 Aligned_cols=28 Identities=11% Similarity=0.088 Sum_probs=22.1
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++-.-.-++|+||.++||||+|+.++
T Consensus 155 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 182 (256)
T TIGR02280 155 MGLAMLGEKLDARTAASWGLIWQVVDDA 182 (256)
T ss_pred HHHHHcCCCCCHHHHHHcCCcceeeChH
Confidence 3344455679999999999999998754
No 88
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=87.17 E-value=0.61 Score=33.85 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=22.6
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-..++-....++|+||.++||||+|+.+.
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (260)
T PRK05809 158 AKELIYTGDMINAEEALRIGLVNKVVEPE 186 (260)
T ss_pred HHHHHHhCCCCCHHHHHHcCCCCcccChH
Confidence 34455555678999999999999998654
No 89
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=86.98 E-value=0.22 Score=36.04 Aligned_cols=27 Identities=22% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVL 70 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~ 70 (91)
....++=-...++|+||+++||||+|+
T Consensus 155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 155 VARAALLFGMRFDAEAAVRHGLALMVA 181 (249)
T ss_pred HHHHHHHhCCccCHHHHHHcCCHHHHH
Confidence 345555566789999999999999997
No 90
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=86.89 E-value=0.64 Score=33.88 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++-.-.-+||+||.++||||+|+.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~ 186 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLA 186 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHH
Confidence 4454455679999999999999998754
No 91
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=86.88 E-value=0.76 Score=33.78 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=20.5
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.++=--.-++|+||+++||||+|+.+.
T Consensus 173 ~l~l~g~~~~a~eA~~~Glv~~vv~~~ 199 (276)
T PRK05864 173 EIMLTGRDVDAEEAERIGLVSRQVPDE 199 (276)
T ss_pred HHHHcCCccCHHHHHHcCCcceeeCHH
Confidence 333334458999999999999998654
No 92
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=86.75 E-value=0.7 Score=34.38 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-.-..++|+||+++||||+|+...
T Consensus 175 ~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (296)
T PRK08260 175 LEWVYSGRVFDAQEALDGGLVRSVHPPD 202 (296)
T ss_pred HHHHHcCCccCHHHHHHCCCceeecCHH
Confidence 4455555679999999999999998653
No 93
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=86.63 E-value=0.68 Score=34.12 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=--..|+|+||+++||||+|+.++.
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~ 194 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQ 194 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHH
Confidence 34444456799999999999999987543
No 94
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=86.48 E-value=0.98 Score=33.04 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=21.6
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
..++=--.-++|+||.++||||+|+.+
T Consensus 171 ~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 171 RELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred HHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 444445566999999999999999875
No 95
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=85.82 E-value=0.96 Score=33.10 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=21.6
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..++=...-|||+||+++||||+|+...
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 189 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAA 189 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHH
Confidence 3444445568999999999999998753
No 96
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=84.94 E-value=1.1 Score=33.50 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=23.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++=--..++|+||.++||||+|+.+.
T Consensus 185 A~~llltG~~i~a~eA~~~GLv~~vv~~~ 213 (302)
T PRK08272 185 AKRLLFTGDCITGAQAAEWGLAVEAVPPE 213 (302)
T ss_pred HHHHHHcCCccCHHHHHHcCCCceecCHH
Confidence 34555566789999999999999998643
No 97
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=84.83 E-value=1.1 Score=33.41 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=22.5
Q ss_pred cCCHHHHHHcCCcceeecCCCCCCCchhHhHhHh
Q 039249 54 YFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKK 87 (91)
Q Consensus 54 wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~ 87 (91)
=+||.++.+.|+||+|+++.. ......++.|++
T Consensus 196 ~~~a~~l~~~g~iD~ii~e~~-~~~~~~~~~~~~ 228 (256)
T PRK12319 196 KITAGELLEMGVVDKVIPEHG-YFSSEIIDMIKK 228 (256)
T ss_pred CCCHHHHHHCCCCcEecCCCC-CCHHHHHHHHHH
Confidence 349999999999999998752 122234444443
No 98
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=84.78 E-value=1 Score=32.81 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=24.0
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
....++=.-.=++|+||.++||||+|+...
T Consensus 159 ~a~~lll~g~~~~a~eA~~~Glv~~v~~~~ 188 (262)
T PRK07468 159 NARRVFMSARLFDAEEAVRLGLLSRVVPAE 188 (262)
T ss_pred HHHHHHHhCCccCHHHHHHcCCcceecCHH
Confidence 345566666789999999999999998754
No 99
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=84.66 E-value=0.41 Score=34.82 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
..++=.-..+||+||+++||||+|.+
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 162 ARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred HHHHHhCCccCHHHHHHcCCcccchH
Confidence 34444556789999999999999853
No 100
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=84.51 E-value=0.59 Score=35.57 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-.-..++|+||++.|||++|+....
T Consensus 188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 188 ALEMILTGRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred HHHHHHhcCcccHHHHHhCCceeEeecchh
Confidence 456777888999999999999999998766
No 101
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=83.46 E-value=1.3 Score=31.96 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=21.6
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceee
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVL 70 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~ 70 (91)
-.+++=....+||+||.++||||+|.
T Consensus 147 a~~l~ltg~~~~a~eA~~~Glv~~v~ 172 (243)
T PRK07854 147 ARAMLLGAEKLTAEQALATGMANRIG 172 (243)
T ss_pred HHHHHHcCCCcCHHHHHHCCCccccc
Confidence 44566566789999999999999994
No 102
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=82.56 E-value=1 Score=32.67 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.3
Q ss_pred hhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 48 DIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 48 ~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
++=-..-++|+||+++||||+|+...
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 162 LLLTGEPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred HHHcCCcCCHHHHHHcCCcCeeeCCH
Confidence 44556678999999999999988753
No 103
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=82.49 E-value=1.8 Score=33.92 Aligned_cols=25 Identities=24% Similarity=0.184 Sum_probs=21.1
Q ss_pred CCCcCCHHHHHHcCCcceeecCCCC
Q 039249 51 RPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
--..++|+||.++||||+|+++.+.
T Consensus 191 tGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 191 LCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred hCCcCcHHHHHHcCChheecCchhc
Confidence 3458999999999999999887653
No 104
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=82.36 E-value=1.7 Score=35.62 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHhh-CCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 34 YAKHF-GKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 34 Ya~~T-G~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
+.++. |.+...-.+++-....++|+||.++|||++|+++..
T Consensus 426 L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~ 467 (546)
T TIGR03222 426 LATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDID 467 (546)
T ss_pred HHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchH
Confidence 34454 655543333444566799999999999999977543
No 105
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=80.37 E-value=1.8 Score=35.42 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=21.0
Q ss_pred hhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 48 DIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 48 ~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
++=....|+|+||+++||||+|+.++
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d 217 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPS 217 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHH
Confidence 33345589999999999999998654
No 106
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=77.48 E-value=1 Score=35.42 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=21.2
Q ss_pred cCCCcCCHHHHHHcCCcceeecCCC
Q 039249 50 RRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 50 ~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
=.-..|+|+||+++||+|+|+.+..
T Consensus 198 LTG~~i~A~eA~~~GLv~~vVp~~~ 222 (401)
T PLN02157 198 LTGLKLSGAEMLACGLATHYIRSEE 222 (401)
T ss_pred HcCCcCCHHHHHHcCCceEEeCHhH
Confidence 3456899999999999999987654
No 107
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=77.28 E-value=3.5 Score=31.76 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=18.9
Q ss_pred CcCCHHHHHHcCCcceeecCCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-+||..+.+.|+||+|+..+.
T Consensus 248 ~~~ta~~l~~~G~iD~II~ep~ 269 (316)
T TIGR00513 248 MKITAPDLKELGLIDSIIPEPL 269 (316)
T ss_pred ccCCHHHHHHCCCCeEeccCCC
Confidence 4568999999999999998663
No 108
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=76.58 E-value=1.6 Score=33.87 Aligned_cols=27 Identities=19% Similarity=0.157 Sum_probs=21.1
Q ss_pred hhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 48 DIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 48 ~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
++=...-++|+||+++||||+|+.+..
T Consensus 168 l~ltG~~i~a~eA~~~GLv~~vv~~~~ 194 (379)
T PLN02874 168 LALTGARLNGKEMVACGLATHFVPSEK 194 (379)
T ss_pred HHHcCCcccHHHHHHcCCccEEeCHHH
Confidence 333445799999999999999987543
No 109
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=76.23 E-value=1.7 Score=35.66 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=18.7
Q ss_pred CCcCCHHHHHHcCCcceeecCC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~~ 73 (91)
-.-++|+||+++||||+|+.+.
T Consensus 192 G~~i~A~eA~~~GLV~~vv~~~ 213 (546)
T TIGR03222 192 EEGVRGKRAKEWRLVDEVVKPS 213 (546)
T ss_pred CCCccHHHHHHcCCceEEeChH
Confidence 3458999999999999998753
No 110
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=75.97 E-value=1.3 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.++|=-..=|+|+||.++|||++|...
T Consensus 169 ~E~ll~~~kltA~Ea~~~glVskif~~ 195 (266)
T KOG0016|consen 169 NEMLLFGEKLTAQEACEKGLVSKIFPA 195 (266)
T ss_pred HHHHHhCCcccHHHHHhcCchhhhcCh
Confidence 344444556899999999999999876
No 111
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=75.69 E-value=2.2 Score=32.62 Aligned_cols=29 Identities=14% Similarity=0.095 Sum_probs=22.4
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=.-..++|+||+++||||+|+.+..
T Consensus 161 ~~llltG~~i~A~eA~~~GLv~~vv~~~~ 189 (342)
T PRK05617 161 TYLALTGARISAADALYAGLADHFVPSAD 189 (342)
T ss_pred HHHHHcCCCCCHHHHHHcCCcceecCHHH
Confidence 33444556799999999999999987543
No 112
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=73.53 E-value=6.8 Score=31.54 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+-.|+.-|+..+-..++..++.=+|++||.++|+||-|..+
T Consensus 147 ~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 147 IRSLAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred HHHHHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 344677789999999999999999999999999999987554
No 113
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=72.92 E-value=5 Score=32.20 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=19.3
Q ss_pred CcCCHHHHHHcCCcceeecCCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-+||.++.+.|+||+|+....
T Consensus 318 lkitA~dL~~~GiID~II~Ep~ 339 (431)
T PLN03230 318 LRITAAELVKLGVVDEIVPEPL 339 (431)
T ss_pred cCCCHHHHHhCCCCeEeccCCC
Confidence 4789999999999999998653
No 114
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=72.70 E-value=4 Score=34.23 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=23.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-..++-....++|+||.++||||+|+.+.
T Consensus 163 A~~llltG~~~~A~eA~~~GLv~~vv~~~ 191 (715)
T PRK11730 163 ALEWIAAGKDVRAEDALKVGAVDAVVAPE 191 (715)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCeEecCHH
Confidence 34555566789999999999999998654
No 115
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=72.48 E-value=4.1 Score=34.06 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.3
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-...-++|+||.++||||+|+.+.
T Consensus 160 ~~llltG~~~~a~eA~~~GLV~~vv~~~ 187 (699)
T TIGR02440 160 LDMILTGKQLRAKQALKLGLVDDVVPQS 187 (699)
T ss_pred HHHHHcCCcCCHHHHHhCCCCcEecChh
Confidence 4556667789999999999999998754
No 116
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=70.25 E-value=9.3 Score=22.67 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=25.8
Q ss_pred HHHHHHHHhhCC-CHHHHHHhhcCCCcCCHHHHHHc
Q 039249 29 ELVKLYAKHFGK-TPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 29 ~i~~iYa~~TG~-~~e~I~~~m~rd~wmta~EA~ey 63 (91)
.+++-..+-+|. |.++|-+++ +|..|.|.||+.-
T Consensus 7 k~VQ~iKEiv~~hse~eIya~L-~ecnMDpnea~qr 41 (60)
T PF06972_consen 7 KTVQSIKEIVGCHSEEEIYAML-KECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHHhcCCCHHHHHHHH-HHhCCCHHHHHHH
Confidence 345556677777 888888766 6899999999875
No 117
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=70.16 E-value=6.2 Score=28.49 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.2
Q ss_pred HhhcCCCcCCHHHHHHcCCccee
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I 69 (91)
+++=.-.-++|+||.++||||.+
T Consensus 151 ~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 151 EILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHHhCCccCHHHHHHCCCcccc
Confidence 33334455899999999999964
No 118
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.04 E-value=5.1 Score=33.53 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+...
T Consensus 164 A~~llltG~~i~a~eA~~~GLv~~vv~~~ 192 (708)
T PRK11154 164 ALDMILTGKQLRAKQALKLGLVDDVVPHS 192 (708)
T ss_pred HHHHHHhCCcCCHHHHHHCCCCcEecChH
Confidence 34566667779999999999999998754
No 119
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=69.96 E-value=2.7 Score=34.45 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=20.3
Q ss_pred CCCcCCHHHHHHcCCcceeecCCC
Q 039249 51 RPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
....++|+||.++|||++|+.+..
T Consensus 448 tg~~i~A~eA~~~GLv~~vv~~~~ 471 (550)
T PRK08184 448 IGQPLDADAAEELGLVTAAPDDID 471 (550)
T ss_pred hCCcCCHHHHHHcCCcccccChHH
Confidence 456899999999999999987543
No 120
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=68.53 E-value=12 Score=28.81 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=18.8
Q ss_pred CcCCHHHHHHcCCcceeecCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~ 73 (91)
.-+||.++++.|+||+|+..+
T Consensus 248 ~~ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 248 MKITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred cCCCHHHHHHCCCceEeccCC
Confidence 458999999999999999865
No 121
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=68.23 E-value=25 Score=22.39 Aligned_cols=38 Identities=26% Similarity=0.243 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
...+++...+..+.-|+.+..-.|++.|.|.++|....
T Consensus 34 ~~~~~~~lV~~~N~~R~~~Y~~iA~~ng~t~~~V~~~~ 71 (95)
T PF07027_consen 34 ASAEVRALVAAINADRRALYQEIAKKNGITVEQVAATA 71 (95)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56789999999999999999999999999999988743
No 122
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=68.06 E-value=6.3 Score=30.46 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.8
Q ss_pred CcCCHHHHHHcCCcceeecCCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~~ 74 (91)
.=+||++-++.|+||+|+..+.
T Consensus 251 ~~ita~dL~~~giiD~ii~Ep~ 272 (322)
T CHL00198 251 LKITSEDLKVLGIIDEIIPEPI 272 (322)
T ss_pred cCCCHHHHHhCCCCeEeccCCC
Confidence 4589999999999999998663
No 123
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=67.51 E-value=22 Score=21.35 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCCCcCCHH
Q 039249 29 ELVKLYAKHFGKTPEQIEADIRRPKYFSPS 58 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~rd~wmta~ 58 (91)
.+.+..++.+|.+..++++++... .+|++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~~ 73 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTAD 73 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCccc
Confidence 367788999999999999988754 44443
No 124
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=67.12 E-value=19 Score=27.40 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCCcC-CHHHHHHc
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPKYF-SPSEAVEY 63 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~wm-ta~EA~ey 63 (91)
+...+++++.+|.|.+.+...+++..|+ ++++.+.+
T Consensus 226 ~ea~~~~ak~~g~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (328)
T TIGR03427 226 KAALEAMAKASGTDLAGYKAQLKTTKMFYTPKEAVAF 262 (328)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhhccccCCHHHHHhh
Confidence 5588999999999999999999998875 56565543
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=66.14 E-value=7.6 Score=32.82 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.0
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+++-...-++|+||.++||||+|+++
T Consensus 172 ~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 172 LDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 456667778999999999999999875
No 126
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=65.32 E-value=4 Score=31.86 Aligned_cols=24 Identities=8% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCCcCCHHHHHHcCCcceeecCCC
Q 039249 51 RPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-...++|+||+..||+|+++.+..
T Consensus 171 TG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 171 TGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred cCCCCCHHHHHHcCCceEecCHhH
Confidence 446899999999999999987653
No 127
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=65.32 E-value=4.6 Score=31.97 Aligned_cols=25 Identities=8% Similarity=0.150 Sum_probs=21.3
Q ss_pred cCCCcCCHHHHHHcCCcceeecCCC
Q 039249 50 RRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 50 ~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
=-...++|+||+.+||+|+++.+..
T Consensus 203 LTG~~i~a~eA~~~GLa~~~v~~~~ 227 (407)
T PLN02851 203 LTGQKLNGVEMIACGLATHYCLNAR 227 (407)
T ss_pred HhCCcCCHHHHHHCCCceeecCHhh
Confidence 3456899999999999999988764
No 128
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=64.70 E-value=7.6 Score=32.66 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=21.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
..++--...++|+||.++||||+|+.+
T Consensus 164 ~~llltG~~~~A~eA~~~GLvd~vv~~ 190 (714)
T TIGR02437 164 LEWIASGKENRAEDALKVGAVDAVVTA 190 (714)
T ss_pred HHHHHcCCcCCHHHHHHCCCCcEeeCh
Confidence 344555667999999999999999864
No 129
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=63.61 E-value=3.7 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.1
Q ss_pred cCCCcCCHHHHHHcCCcce
Q 039249 50 RRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 50 ~rd~wmta~EA~eyGliD~ 68 (91)
.....||-++|+..||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 3456789999999999995
No 130
>smart00250 PLEC Plectin repeat.
Probab=63.50 E-value=5.5 Score=20.80 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.8
Q ss_pred CCCcCCHHHHHHcCCccee
Q 039249 51 RPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I 69 (91)
...-||-.||+.-|+||.-
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4556899999999999963
No 131
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=62.95 E-value=22 Score=19.13 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=27.2
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
..-+|+.+|.++..|..+.......+.+.+...
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~i 44 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKKI 44 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHHH
Confidence 356889999999999999999999999887653
No 132
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=62.80 E-value=19 Score=27.49 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhCC-CHHHHHHhhc-----CCCcCCHHHHHHcCCc
Q 039249 22 EIKNVKAELVKLYAKHFGK-TPEQIEADIR-----RPKYFSPSEAVEYGIM 66 (91)
Q Consensus 22 ~l~~~~~~i~~iYa~~TG~-~~e~I~~~m~-----rd~wmta~EA~eyGli 66 (91)
.+..+++.+.+++..+.+. -.++|.+.+. .|+-+|++||++.||-
T Consensus 192 Ai~q~~~~v~~lL~~~~~~eka~~ia~~L~~g~~tHdypi~~eea~~lGL~ 242 (285)
T PF01972_consen 192 AIRQVREFVKELLKDKMDEEKAEEIAEKLSSGKWTHDYPITVEEAKELGLP 242 (285)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCCCCCCHHHHHHcCCC
Confidence 4566667777777665542 2233444444 5666999999999974
No 133
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=61.76 E-value=25 Score=25.90 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=28.3
Q ss_pred hhCCCHHHHHHhhcC--CCcCCHHHHHHcCCcceeecCCCC
Q 039249 37 HFGKTPEQIEADIRR--PKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 37 ~TG~~~e~I~~~m~r--d~wmta~EA~eyGliD~I~~~~~~ 75 (91)
-+-++.++..+.... .+-.+++.+.+.|+||.|+++...
T Consensus 152 I~~~~~~~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 152 VTKRSVEELEALAKSSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred HHccCHhHHHHHHHhhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 344566666555443 467888899999999999997654
No 134
>PF14195 DUF4316: Domain of unknown function (DUF4316)
Probab=60.20 E-value=7.3 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=19.3
Q ss_pred HcCCcceeecCCCCC----------CCchhHhHhHhhh
Q 039249 62 EYGIMDKVLYTEKSP----------EDHGVVSDLKKAQ 89 (91)
Q Consensus 62 eyGliD~I~~~~~~~----------~~~~~~~~~~~~~ 89 (91)
.||.||.|+.+...+ +..++..+|+.++
T Consensus 15 NYnMIDGiiNN~~~~p~~~ele~~~~K~Sv~~rLke~~ 52 (70)
T PF14195_consen 15 NYNMIDGIINNGPEAPTVAELEKPEEKPSVLERLKEKK 52 (70)
T ss_pred ccccccccccCCCCCCccccccCccccccHHHHHHhhH
Confidence 589999999983221 2344888887654
No 135
>PF14117 DUF4287: Domain of unknown function (DUF4287)
Probab=59.91 E-value=22 Score=20.97 Aligned_cols=34 Identities=24% Similarity=0.130 Sum_probs=24.8
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCC-CcCCHHHHHH
Q 039249 29 ELVKLYAKHFGKTPEQIEADIRRP-KYFSPSEAVE 62 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~rd-~wmta~EA~e 62 (91)
++..-.-++||+|+++..+.++.- -.....|-+.
T Consensus 4 sy~~~Ie~kTGk~~~~W~~~~~~~~~~~k~~e~v~ 38 (61)
T PF14117_consen 4 SYLPNIEKKTGKTLDEWLALAREGGPLTKHGEIVA 38 (61)
T ss_pred HHHhHhHHHHCcCHHHHHHHHHHhCCCCcHHHHHH
Confidence 344556789999999999988766 6666666554
No 136
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=53.09 E-value=8.4 Score=26.18 Aligned_cols=50 Identities=28% Similarity=0.391 Sum_probs=33.1
Q ss_pred ccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHH
Q 039249 7 GRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPS 58 (91)
Q Consensus 7 ~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~ 58 (91)
|-+||...|+..+-.-=..+-+.|.++ ..-|.+.++|.+-+.|++=++++
T Consensus 74 GDVwGHRKDinEYy~i~~~vi~~I~el--~~eG~s~eei~~ki~~e~kl~pd 123 (131)
T PF08004_consen 74 GDVWGHRKDINEYYEIPESVIERIKEL--KSEGKSEEEIAEKISRETKLSPD 123 (131)
T ss_pred cccccccCCCcccccCCHHHHHHHHHH--HHcCCCHHHHHHHHHHhhcCCHH
Confidence 456777777766543222222223222 35699999999999999999986
No 137
>PF12535 Nudix_N: Hydrolase of X-linked nucleoside diphosphate N terminal ; PDB: 3Q1P_B 3Q4I_B.
Probab=49.61 E-value=11 Score=21.92 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHh
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEAD 48 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~ 48 (91)
+...++++...++++..|+.|.++|..+
T Consensus 29 ERy~~lr~ia~ella~~s~~~~e~i~~l 56 (58)
T PF12535_consen 29 ERYEELREIAAELLAEYSDLPPEEIKEL 56 (58)
T ss_dssp HHHHHHHHHHHHHHCCHTT--HHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3457788899999999999999998764
No 138
>PRK09726 antitoxin HipB; Provisional
Probab=48.87 E-value=59 Score=19.66 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHH----HHcCCccee
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEA----VEYGIMDKV 69 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA----~eyGliD~I 69 (91)
+...+....+.+...+..-..-+|+++|.+...|..+.......+.+.. ..+|+--.+
T Consensus 9 ~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~~~~ 70 (88)
T PRK09726 9 SPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTL 70 (88)
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCCcch
Confidence 4455555555555544445678999999999999999987766776653 345544344
No 139
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=48.75 E-value=21 Score=20.61 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=20.9
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCC
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFS 56 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmt 56 (91)
..-.|+..|.+...|..+.+|+.|-.
T Consensus 16 ~~eIA~~Lg~~~~TV~~W~~r~~W~~ 41 (58)
T PF06056_consen 16 IKEIAEELGVPRSTVYSWKDRYKWDE 41 (58)
T ss_pred HHHHHHHHCCChHHHHHHHHhhCccc
Confidence 34467888999999999999998843
No 140
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=48.46 E-value=31 Score=20.59 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhc
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
+..+++.+++++|.+..++...++
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~ 26 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLD 26 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 457889999999999999888775
No 141
>PF14420 Clr5: Clr5 domain
Probab=48.15 E-value=28 Score=19.58 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHH
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE 59 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~E 59 (91)
++-+..+..|.+.|. .-|+|.++|.+.|.+.+=|.|.+
T Consensus 3 ~~We~~K~~I~~LY~-~e~~tl~~v~~~M~~~~~F~at~ 40 (54)
T PF14420_consen 3 EDWEPHKEEIERLYI-DENKTLEEVMEIMKEEHGFKATK 40 (54)
T ss_pred chHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHhCCCcCH
Confidence 345778888999997 34789999999998877777653
No 142
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=46.78 E-value=32 Score=20.58 Aligned_cols=37 Identities=24% Similarity=0.282 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.++++||.+..++...++. .+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~~~~~~v~~vl~~-l~~~i~~~L~~g 39 (90)
T smart00411 3 KSELIDAIAEKAGLSKKDAKAAVDA-FLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 4568888999999999998887752 333334455555
No 143
>TIGR02792 PCA_ligA protocatechuate 4,5-dioxygenase, alpha subunit. Protocatechuate (PCA) 4,5-dioxygenase is the first enzyme in the PCA 4,5-cleavage pathway that is an alternative to PCA 3,4-cleavage and PCA 2,3 cleavage pathways. PCA is an intermediate in the breakdown of lignin (hence the gene symbol ligA) and other compounds. Members of this family are the alpha chain of PCA 4,5-dioxygenase, or the equivalent domain of a fusion protein.
Probab=46.50 E-value=22 Score=23.79 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+..||.|.++..++|-
T Consensus 86 s~q~i~a~mtG~t~eef~~mm~ 107 (117)
T TIGR02792 86 SFQQMAGSMTGMTEEEYRQMMI 107 (117)
T ss_pred cHHHHHHHhcCCCHHHHHHHHH
Confidence 4788999999999999998874
No 144
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=46.23 E-value=88 Score=23.06 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=28.0
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
..++++.+|.+.+.+...+.+..|.++++....
T Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (320)
T PRK11480 249 ISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAE 281 (320)
T ss_pred HHHHHHHhCcCHHHHHHHHccCCCCCHHHHHHH
Confidence 458888999999999999999999998776653
No 145
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=46.11 E-value=48 Score=18.28 Aligned_cols=38 Identities=11% Similarity=-0.006 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHhhcCC-CcCCHHHH
Q 039249 23 IKNVKAELVKLYAKHFGKTPEQIEADIRRP-KYFSPSEA 60 (91)
Q Consensus 23 l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd-~wmta~EA 60 (91)
+..-+..=..-+|+.+|.+...|..+.... ..++.+..
T Consensus 5 ~m~~~~it~~~La~~~gis~~tl~~~~~~~~~~~~~~~l 43 (63)
T PF13443_consen 5 LMAERGITQKDLARKTGISRSTLSRILNGKPSNPSLDTL 43 (63)
T ss_dssp HHHHTT--HHHHHHHHT--HHHHHHHHTTT-----HHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHhcccccccHHHH
Confidence 344444445567889999999999999877 56666553
No 146
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=46.03 E-value=27 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=17.6
Q ss_pred cCCHHHHHHcCCcceeecCCC
Q 039249 54 YFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 54 wmta~EA~eyGliD~I~~~~~ 74 (91)
=+||..=+++|+||.|+....
T Consensus 248 kita~dLk~lgiID~II~Ep~ 268 (317)
T COG0825 248 KITAHDLKELGIIDGIIPEPL 268 (317)
T ss_pred CCCHHHHHhCCCcceeccCCC
Confidence 367788899999999998765
No 147
>PRK13378 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=44.45 E-value=25 Score=23.52 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+.-||.|.|+..++|-
T Consensus 92 s~q~i~a~mtG~t~eef~~mm~ 113 (117)
T PRK13378 92 DMQDIGAQQTGMTKEEFKAKLL 113 (117)
T ss_pred cHHHHHHHhcCCCHHHHHHHHH
Confidence 4678999999999999998874
No 148
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=43.76 E-value=10 Score=28.67 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=18.7
Q ss_pred CcCCHHHHHHcCCcceeecCCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~~ 74 (91)
+-|+|.||++.||+-+|+..+.
T Consensus 196 r~f~a~EAl~~GLvSrvf~dk~ 217 (292)
T KOG1681|consen 196 RKFSADEALDSGLVSRVFPDKE 217 (292)
T ss_pred hhcchhhhhhcCcchhhcCCHH
Confidence 5589999999999999987644
No 149
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=43.67 E-value=70 Score=19.05 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhh-CCCHHHHHHhhcCCCcCCHHHHH
Q 039249 14 TDVEIARKEI--KNVKAELVKLYAKHF-GKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 14 ~dl~~~a~~l--~~~~~~i~~iYa~~T-G~~~e~I~~~m~rd~wmta~EA~ 61 (91)
-+|...|..| ..+-+...+..|.+. |+|+++|++.+.=..=+|++|.-
T Consensus 17 ~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~ 67 (78)
T PF01466_consen 17 FDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEE 67 (78)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHH
T ss_pred HHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 3555566654 445566666677654 89999999999866668887753
No 150
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=43.30 E-value=14 Score=23.19 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=15.2
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++|+.|.
T Consensus 33 v~i~p~dA~~lgI~dG 48 (112)
T cd02787 33 VFMNPDDIARLGLKAG 48 (112)
T ss_pred EEECHHHHHHhCCCCC
Confidence 7999999999999987
No 151
>PRK13377 protocatechuate 4,5-dioxygenase subunit alpha; Provisional
Probab=42.66 E-value=27 Score=23.72 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+.-||.|.++..++|-
T Consensus 92 s~q~i~a~mtG~t~eef~~mm~ 113 (129)
T PRK13377 92 SFQQMAGSMTGMTEEEYRQMML 113 (129)
T ss_pred cHHHHHHHhcCCCHHHHHHHHH
Confidence 4788999999999999999874
No 152
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=42.47 E-value=53 Score=17.30 Aligned_cols=32 Identities=9% Similarity=-0.118 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+.....-.+.+....
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 46688999999999999987766666666543
No 153
>cd07924 PCA_45_Doxase_A The A subunit of Protocatechuate 4,5-dioxygenase (LigAB) is the smaller, non-catalytic subunit. The A subunit is the non-catalytic subunit of Protocatechuate (PCA) 4,5-dioxygenase (LigAB), which is composed of A and B subunits that form a tetramer. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As a member of the Class III extradiol dioxygenase family, LigAB uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=42.17 E-value=27 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+..||.|.++..++|-
T Consensus 89 s~q~i~a~mtG~s~eef~~mm~ 110 (121)
T cd07924 89 SFQQAAGSMTGMSMEEYRQMMV 110 (121)
T ss_pred cHHHHHHHhcCCCHHHHHHHHH
Confidence 4788999999999999998874
No 154
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=41.39 E-value=25 Score=17.94 Aligned_cols=16 Identities=31% Similarity=0.355 Sum_probs=11.2
Q ss_pred HHhhCCCHHHHHHhhc
Q 039249 35 AKHFGKTPEQIEADIR 50 (91)
Q Consensus 35 a~~TG~~~e~I~~~m~ 50 (91)
|...|.|.++|++.+.
T Consensus 12 A~~~Gls~eeir~FL~ 27 (30)
T PF08671_consen 12 AKESGLSKEEIREFLE 27 (30)
T ss_dssp HHHTT--HHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5678999999998764
No 155
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=41.28 E-value=15 Score=23.00 Aligned_cols=25 Identities=20% Similarity=0.502 Sum_probs=18.7
Q ss_pred HHHHhhcCC-CcCCHHHHHHcCCcce
Q 039249 44 QIEADIRRP-KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 44 ~I~~~m~rd-~wmta~EA~eyGliD~ 68 (91)
.+.....+. .||+++.|.++|+.|.
T Consensus 27 ~l~~~~~~~~v~in~~dA~~lgi~~G 52 (122)
T cd02791 27 RLNAHVPEPYVEIHPEDAARLGLKEG 52 (122)
T ss_pred HHHhhCCCCEEEECHHHHHHcCCCCC
Confidence 445444444 7999999999999865
No 156
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=41.11 E-value=85 Score=19.24 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCHHHHHHcCCcc
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSPSEAVEYGIMD 67 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta~EA~eyGliD 67 (91)
.+...|+.+.-....+.+.+.+.+|.++.+... ++....+=-.+=|.+.||-|
T Consensus 23 ~~~~lA~~~~~S~~~l~r~f~~~~g~s~~~~i~~~Rl~~a~~~L~~~~~~i~~iA~~~Gf~~ 84 (107)
T PRK10219 23 NIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84 (107)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHCCCC
Confidence 566677777788888999999999998866433 33333332355677778766
No 157
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=40.68 E-value=63 Score=18.50 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..++....-++.+.+..
T Consensus 21 ~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~ 52 (78)
T TIGR02607 21 IRALAKALGVSRSTLSRIVNGRRGITADMALR 52 (78)
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45688999999999999998877888877543
No 158
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=39.89 E-value=17 Score=22.69 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=15.3
Q ss_pred CCcCCHHHHHHcCCcce
Q 039249 52 PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 52 d~wmta~EA~eyGliD~ 68 (91)
..||+++.|.++||-|.
T Consensus 32 ~v~i~p~dA~~lgi~~G 48 (116)
T cd02786 32 TLLIHPADAAARGIADG 48 (116)
T ss_pred EEEECHHHHHHcCCCCC
Confidence 37999999999999975
No 159
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=39.75 E-value=13 Score=22.97 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=13.5
Q ss_pred CCcCCHHHHHHcCCcce
Q 039249 52 PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 52 d~wmta~EA~eyGliD~ 68 (91)
-.||+++.|.++||.|.
T Consensus 31 ~v~inp~dA~~~Gi~~G 47 (110)
T PF01568_consen 31 FVEINPEDAAKLGIKDG 47 (110)
T ss_dssp EEEEEHHHHHHCT--TT
T ss_pred EEEEcHHHHHHhcCcCC
Confidence 58999999999999875
No 160
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=39.40 E-value=49 Score=19.56 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++..+++||.+..++...++. .+-.-.+++..|
T Consensus 2 K~~l~~~ia~~~~~~~~~v~~vl~~-~~~~i~~~L~~g 38 (87)
T cd00591 2 KSELIEAIAEKTGLSKKDAEAAVDA-FLDVITEALAKG 38 (87)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 4568889999999999998887652 222333444444
No 161
>cd07925 LigA_like_1 The A subunit of Uncharacterized proteins with similarity to Protocatechuate 4,5-dioxygenase (LigAB). The proteins of unknown function in this subfamily are similar to the A subunit of the Protocatechuate (PCA) 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds.
Probab=37.94 E-value=36 Score=22.34 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.1
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+.-||.|.|+..++|.
T Consensus 81 s~q~i~a~mtG~t~eef~~~~~ 102 (106)
T cd07925 81 NMQDIGGLQTGMSTEEFKAMLV 102 (106)
T ss_pred cHHHHHHHhcCCCHHHHHHHHH
Confidence 4778999999999999988875
No 162
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=37.75 E-value=70 Score=18.48 Aligned_cols=28 Identities=11% Similarity=0.014 Sum_probs=23.2
Q ss_pred HHHHhhCCCHHHHHHhhcCCCcCCHHHH
Q 039249 33 LYAKHFGKTPEQIEADIRRPKYFSPSEA 60 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~rd~wmta~EA 60 (91)
-.|+++|.+...|...++...+.+++-+
T Consensus 5 ~iA~~~gvS~~TVSr~ln~~~~v~~~t~ 32 (70)
T smart00354 5 DVARLAGVSKATVSRVLNGNGRVSEETR 32 (70)
T ss_pred HHHHHHCCCHHHHHHHHCCCCCCCHHHH
Confidence 4678899999999999988888887644
No 163
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=37.34 E-value=86 Score=18.23 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-CCcCCHHHHH
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRR-PKYFSPSEAV 61 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-d~wmta~EA~ 61 (91)
+..|..+.+-.+.+...+.+..|.+.+.....-.+ ++.+|.+-..
T Consensus 5 ~~~A~~i~~rH~~le~fl~~~lgv~~~~a~~~A~~iEH~is~e~~~ 50 (71)
T PF02742_consen 5 REIAERILRRHRILEEFLVEVLGVDEEEAEEEACRIEHVISPETIE 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHGCCS-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHccCCHHHHH
Confidence 45667777777677777779999999998887665 7888876543
No 164
>cd02785 MopB_CT_4 The MopB_CT_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=37.33 E-value=20 Score=22.86 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.9
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.|++++.|.++||.|.
T Consensus 34 v~i~p~dA~~~gi~~G 49 (124)
T cd02785 34 VKINPIDAAARGIAHG 49 (124)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999985
No 165
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=37.03 E-value=20 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=14.8
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++||.|.
T Consensus 37 v~inp~dA~~lgi~~G 52 (120)
T cd00508 37 VEIHPEDAARLGIKDG 52 (120)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999974
No 166
>cd02775 MopB_CT Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=36.59 E-value=20 Score=21.41 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCCcCCHHHHHHcCCcce
Q 039249 51 RPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~ 68 (91)
...||+++.|..+||.|.
T Consensus 23 ~~v~~~~~da~~lgl~~G 40 (101)
T cd02775 23 PVVEINPEDAAALGIKDG 40 (101)
T ss_pred CEEEECHHHHHHcCCCCC
Confidence 358999999999999965
No 167
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=36.59 E-value=17 Score=28.88 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=24.4
Q ss_pred CCcCCHHHHHHcCCcceeecCCCCCCCchhHhHhHh
Q 039249 52 PKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKK 87 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~ 87 (91)
+-|..|+.+.+.||+|- +.++... +.++.++|+.
T Consensus 328 EQliRA~Rl~~LGL~dv-L~pe~lt-~~~La~al~~ 361 (400)
T COG4671 328 EQLIRAQRLEELGLVDV-LLPENLT-PQNLADALKA 361 (400)
T ss_pred HHHHHHHHHHhcCccee-eCcccCC-hHHHHHHHHh
Confidence 67889999999999994 4555544 5556666554
No 168
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=35.80 E-value=58 Score=22.55 Aligned_cols=33 Identities=15% Similarity=0.003 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
-+-.|+++|+|..-+.+.+-.-..+++++|...
T Consensus 24 we~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kl 56 (150)
T TIGR00673 24 FADIADGLGLAEVFVAAALYGQAAAPADEARLV 56 (150)
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 445788999999999999999999999999764
No 169
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=35.10 E-value=11 Score=21.36 Aligned_cols=37 Identities=14% Similarity=0.294 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHH---HhhcCCCcCCH
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIE---ADIRRPKYFSP 57 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~---~~m~rd~wmta 57 (91)
+...++-+.+.+++++.+|.|.+.|. ..++++.|+.+
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~~~~ 54 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTYYPQ 54 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhheEEC
Confidence 34566777888999999999877654 35567888754
No 170
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=34.68 E-value=1.5e+02 Score=22.42 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCCCCCchhHhHhHh
Q 039249 19 ARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKK 87 (91)
Q Consensus 19 ~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~ 87 (91)
.+-.|--....-..-.|++.|.|.-.|..++. +|.+.|+|.--+..+ .....++...|++
T Consensus 20 ~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~--------~Ar~~GiV~I~I~~~-~~~~~~Le~~L~~ 79 (318)
T PRK15418 20 RIAWFYYHDGLTQSEIGERLGLTRLKVSRLLE--------KGRQSGIIRVQINSR-FEGCLELENALRQ 79 (318)
T ss_pred HHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHH--------HHHHcCcEEEEEeCC-CccHHHHHHHHHH
Confidence 33344444444445568889999999999884 688888877544433 2333445555543
No 171
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=34.51 E-value=1.2e+02 Score=18.89 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=32.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCH
Q 039249 11 GQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSP 57 (91)
Q Consensus 11 G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta 57 (91)
|+...+....+++.+.+ .+.+ .|+++|.+...|..+.....--+.
T Consensus 28 ~~~~~~~~~l~~~r~~~-glSq-LAe~~GIs~stLs~iE~g~~~Ps~ 72 (89)
T TIGR02684 28 GDPAYIAHALGYIARAR-GMTQ-LARKTGLSRESLYKALSGKGNPTF 72 (89)
T ss_pred CCHHHHHHHHHHHHHHC-ChHH-HHHHHCCCHHHHHHHHcCCCCCCH
Confidence 56666666666665555 4554 999999999999999887654443
No 172
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=34.34 E-value=1.1e+02 Score=21.86 Aligned_cols=25 Identities=8% Similarity=0.201 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCHHH
Q 039249 20 RKEIKNVKAELVKLYAKHFGKTPEQ 44 (91)
Q Consensus 20 a~~l~~~~~~i~~iYa~~TG~~~e~ 44 (91)
|+.+.-....+.+++.+.||.|+.+
T Consensus 209 A~~~~~S~~~l~r~Fk~~~G~t~~~ 233 (287)
T TIGR02297 209 ADRLGISESRLNDICRRFSALSPKR 233 (287)
T ss_pred HHHHCCCHHHHHHHHHHHhCCCHHH
Confidence 3333344455555566666665544
No 173
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=34.23 E-value=1.8e+02 Score=20.94 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEA 60 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA 60 (91)
.+++++.+|.+.+.+...+....|.+..+.
T Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (300)
T TIGR01729 227 VQKMAKLIGGDAEGVPQLLKGLSFPTADEQ 256 (300)
T ss_pred HHHHHHHhCcCHHHHHHHHhcCCCCCHHHh
Confidence 477889999999999999999899888765
No 174
>PRK02866 cyanate hydratase; Validated
Probab=34.06 E-value=1.3e+02 Score=20.74 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
-+-.|+.+|+|..-+.+.+..-.-+++++|...
T Consensus 21 w~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kl 53 (147)
T PRK02866 21 WADIAEAIGLSEVWVTAALLGQMTLPAEEAEKV 53 (147)
T ss_pred HHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHH
Confidence 355788999999999999999999999999764
No 175
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=34.00 E-value=24 Score=22.53 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=17.8
Q ss_pred HHHhhcC-CCcCCHHHHHHcCCcce
Q 039249 45 IEADIRR-PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 45 I~~~m~r-d~wmta~EA~eyGliD~ 68 (91)
+.+...+ -.||+++.|.++||.|.
T Consensus 26 l~~~~~~~~v~i~p~dA~~~gi~~G 50 (129)
T cd02782 26 LVKGRNRCTLRIHPDDAAALGLADG 50 (129)
T ss_pred hhccCCCceEEECHHHHHHcCCCCC
Confidence 4443333 37999999999999965
No 176
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=33.43 E-value=51 Score=19.04 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHH---------HhhcCCCcCCHHHH-HHcCCcc
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIE---------ADIRRPKYFSPSEA-VEYGIMD 67 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~---------~~m~rd~wmta~EA-~eyGliD 67 (91)
+.+.-....+..++.+.+|.++.+.. .++-..+.++..|. .++||.|
T Consensus 3 ~~~~~s~~~l~~~f~~~~g~s~~~~~~~~R~~~a~~~L~~~~~~~i~~ia~~~Gf~~ 59 (81)
T PF12833_consen 3 DELGMSERYLSRIFKKETGMSFKQYLRELRLQRAKELLRQNTDLSIAEIAEECGFSS 59 (81)
T ss_dssp HHCTS-HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHTT-SS
T ss_pred HHhCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHcCCCC
Confidence 33444456677777777887765533 23322345555553 4677665
No 177
>PF10743 Phage_Cox: Regulatory phage protein cox; InterPro: IPR019679 Phage Cox proteins are expressed by Enterobacteria phages. The Cox protein is a 79-residue basic protein with a predicted strong helix-turn-helix DNA-binding motif. It inhibits integrative recombination and it activates site-specific excision of the HP1 genome from the Haemophilus influenzae chromosome, Hp1. Cox appears to function as a tetramer. Cox binding sites consist of two direct repeats of the consensus motif 5'-GGTMAWWWWA, one Cox tetramer binding to each motif. Cox binding interferes with the interaction of HP1 integrase with one of its binding sites, IBS5. This competition is central to directional control. Both Cox binding sites are needed for full inhibition of integration and for activating excision, because it plays a positive role in assembling the nucleoprotein complexes that produce excisive recombination, by inducing the formation of a critical conformation in those complexes [].
Probab=32.94 E-value=63 Score=20.49 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=18.6
Q ss_pred HHHHHHhhCCCHHHHHHhhcCC
Q 039249 31 VKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd 52 (91)
.+-||+..|+|..-|+.+.++.
T Consensus 15 ~~~FA~~IGKt~sAVr~Mi~~g 36 (87)
T PF10743_consen 15 YEKFAEYIGKTPSAVRKMIKAG 36 (87)
T ss_pred HHHHHHHHCCCHHHHHHHHHcC
Confidence 3568999999999999998764
No 178
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=32.74 E-value=59 Score=19.68 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.8
Q ss_pred HHHHHhhCCCHHHHHHhhcCCC
Q 039249 32 KLYAKHFGKTPEQIEADIRRPK 53 (91)
Q Consensus 32 ~iYa~~TG~~~e~I~~~m~rd~ 53 (91)
+.|.+.-|.|.++..+.++||.
T Consensus 27 ~a~~~~~~Lt~eE~~al~~rD~ 48 (77)
T cd07321 27 EAVLAEYGLTPEEKAALLARDV 48 (77)
T ss_pred HHHHHHcCCCHHHHHHHHcCCH
Confidence 4577788999999999999983
No 179
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=32.69 E-value=1.4e+02 Score=21.80 Aligned_cols=42 Identities=19% Similarity=0.219 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHhh-----cCCCcCCHHHHHHcCCcce
Q 039249 26 VKAELVKLYAKHFGKTPEQIEADI-----RRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 26 ~~~~i~~iYa~~TG~~~e~I~~~m-----~rd~wmta~EA~eyGliD~ 68 (91)
-++.+.++|.++ |.+.+..+... +.+.|+..-=..|+|+.++
T Consensus 99 e~~el~~iy~~~-G~~~~~a~~~~~~l~~~~~~~~~~~~~~e~g~~~~ 145 (234)
T cd02433 99 EAAELALIYRAK-GLDEEEAKRVASQLMNDPEQALDTLAREELGLDPE 145 (234)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhCcchhHHHHHHHhcCCCcc
Confidence 456788999887 88887765533 2477988888889998764
No 180
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=32.62 E-value=1.5e+02 Score=19.67 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=39.5
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHH---HH---HHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcce
Q 039249 8 RIEGQATDVEIARKEIKNVKAELV---KL---YAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 8 ~~~G~a~dl~~~a~~l~~~~~~i~---~i---Ya~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~ 68 (91)
+.+|+-++...+.+.|+-+.+.-. .+ ..++.|-++++.-.++.+.. +.+|++++||++.
T Consensus 22 ~~Ygd~s~~~DyqeAln~V~e~~eaFd~LPa~iRe~F~N~P~efl~f~~dp~--N~ee~~~Lgl~~~ 86 (114)
T PF09675_consen 22 PEYGDCSSPFDYQEALNMVAEANEAFDELPAHIRERFNNDPEEFLEFLNDPK--NYEEAIKLGLLEP 86 (114)
T ss_pred CcccccCCHHhHHHHHHHHHHHHHHHHHchHHHHHHhCCCHHHHHHHHhCcc--CHHHHHHhccccC
Confidence 456776666666666666554322 22 23467888888887776654 6899999998864
No 181
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=32.57 E-value=60 Score=17.22 Aligned_cols=18 Identities=28% Similarity=0.219 Sum_probs=13.3
Q ss_pred HHHHHhhCCCHHHHHHhh
Q 039249 32 KLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 32 ~iYa~~TG~~~e~I~~~m 49 (91)
..++..||.+..+|..++
T Consensus 17 ~~L~~~tgls~~Qi~~WF 34 (40)
T PF05920_consen 17 EELAKQTGLSRKQISNWF 34 (40)
T ss_dssp HHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH
Confidence 456888999999998753
No 182
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=32.50 E-value=50 Score=28.51 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.0
Q ss_pred CcCCHHHHHHcCCcceeecCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~ 73 (91)
.=+||++-++.|+||+|+..+
T Consensus 339 lkiTa~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 339 LRITAQELCRLQIADGIIPEP 359 (762)
T ss_pred cCCCHHHHHhCCCCeeeccCC
Confidence 457888889999999999865
No 183
>COG3784 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.44 E-value=1.5e+02 Score=19.50 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
-.+.+..+.+++.-|..-.+-.++++|.|.++|.++.
T Consensus 49 daet~alv~~IN~aR~a~Yq~lA~~n~~s~~~vak~a 85 (109)
T COG3784 49 DAETQALVADINAARAASYQQLAKKNGASTEEVAKLA 85 (109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4466777888999999999999999999999998754
No 184
>cd02434 Nodulin-21_like_3 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_3: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=32.40 E-value=1.9e+02 Score=20.81 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=33.8
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHhhCCCHHHHHHhh-----cCCCcCCHHHHHHcCCcc
Q 039249 16 VEIARKEI----KNVKAELVKLYAKHFGKTPEQIEADI-----RRPKYFSPSEAVEYGIMD 67 (91)
Q Consensus 16 l~~~a~~l----~~~~~~i~~iYa~~TG~~~e~I~~~m-----~rd~wmta~EA~eyGliD 67 (91)
++++.+++ +.-++.+.++|..+ |.+.++.+... ++|.|+..-=..|+|+..
T Consensus 68 ~~re~~~i~~~pe~E~~el~~iy~~k-G~~~~~a~~v~~~l~~~~~~~~~~m~~~elg~~~ 127 (225)
T cd02434 68 KKREEWEIENYPEGEKSEMVEIYSLK-GLSEEVADQVVELLSKYRKLFVDIMMTEELGLIP 127 (225)
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCchhhHHHHHHhhccCCC
Confidence 44444444 33445688889877 88887765532 467888888788899844
No 185
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=32.32 E-value=27 Score=22.19 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=14.7
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++||.|.
T Consensus 35 v~inp~dA~~~gi~~G 50 (130)
T cd02781 35 AEINPETAAKLGIADG 50 (130)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999964
No 186
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=32.25 E-value=31 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.534 Sum_probs=17.3
Q ss_pred CCHHHHHHcCCcceeecCCC
Q 039249 55 FSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 55 mta~EA~eyGliD~I~~~~~ 74 (91)
++|+||++.|+|..|+.-..
T Consensus 187 Y~A~eal~MGlVN~Vvp~~~ 206 (282)
T COG0447 187 YDAEEALDMGLVNTVVPHAD 206 (282)
T ss_pred ccHHHHHhcCceeeeccHHH
Confidence 59999999999999977544
No 187
>cd02788 MopB_CT_NDH-1_NuoG2-N7 MopB_CT_NDH-1_NuoG2-N7: C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. In Escherichia coli NDH-1, the largest subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the functional enzyme. The NuoG subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain, is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Unique to this group, compared to the other prokaryotic and eukaryotic groups
Probab=31.38 E-value=28 Score=21.37 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=14.5
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++|+.|.
T Consensus 31 v~inp~dA~~lGi~~G 46 (96)
T cd02788 31 ARLSPADAARLGLADG 46 (96)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999854
No 188
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=31.27 E-value=81 Score=16.14 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIE 46 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~ 46 (91)
|...|+.+---...+.+.+.+.+|.++.+..
T Consensus 11 l~~iA~~~g~S~~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 11 LEDIAEQAGFSPSYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp HHHHHHHHTS-HHHHHHHHHHHTSS-HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCcCHHHHh
Confidence 4555555555677888889999998887653
No 189
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.05 E-value=29 Score=21.75 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.4
Q ss_pred HHHHhhcC-CCcCCHHHHHHcCCcce
Q 039249 44 QIEADIRR-PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 44 ~I~~~m~r-d~wmta~EA~eyGliD~ 68 (91)
.+.+.... -.||+++.|.++||.|.
T Consensus 22 ~l~~~~~~~~v~i~p~dA~~~gi~~G 47 (123)
T cd02778 22 LLHELTPENTLWINPETAARLGIKDG 47 (123)
T ss_pred HHHhcCCCCeEEECHHHHHHcCCCCC
Confidence 34444433 37999999999999965
No 190
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=31.00 E-value=1.1e+02 Score=17.58 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHhhCCCHHHHHHhhc
Q 039249 33 LYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~ 50 (91)
=.|+.+|.+.++|...+.
T Consensus 25 EiA~~lgis~~~v~~~l~ 42 (78)
T PF04539_consen 25 EIAEELGISVEEVRELLQ 42 (78)
T ss_dssp HHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 357889999999988774
No 191
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=30.88 E-value=29 Score=22.18 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=15.2
Q ss_pred CCcCCHHHHHHcCCcce
Q 039249 52 PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 52 d~wmta~EA~eyGliD~ 68 (91)
-.||+++.|.++||.|.
T Consensus 35 ~v~i~p~dA~~lgi~~G 51 (127)
T cd02777 35 PVWINPLDAAARGIKDG 51 (127)
T ss_pred eEEECHHHHHHcCCCCC
Confidence 37999999999999965
No 192
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=30.70 E-value=80 Score=20.53 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=21.2
Q ss_pred HHHHHHcCCcceeecCCCCCCCchhHhHhHhh
Q 039249 57 PSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKA 88 (91)
Q Consensus 57 a~EA~eyGliD~I~~~~~~~~~~~~~~~~~~~ 88 (91)
|+.|++.| |++|+.......-++-+.+|.++
T Consensus 71 a~ra~~~g-i~~vvfDrgg~~yhGrV~a~a~~ 101 (109)
T CHL00139 71 AKKSLKKG-ITKVVFDRGGKLYHGRIKALAEA 101 (109)
T ss_pred HHHHHHCC-CCEEEEcCCCCccchHHHHHHHH
Confidence 67899999 66676666655566666666543
No 193
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=30.63 E-value=89 Score=16.40 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=21.5
Q ss_pred HHHhhCCCHHHHHHhhcCCCcCCHHHH
Q 039249 34 YAKHFGKTPEQIEADIRRPKYFSPSEA 60 (91)
Q Consensus 34 Ya~~TG~~~e~I~~~m~rd~wmta~EA 60 (91)
.|+++|.+...|..++......++.-+
T Consensus 3 lA~~~gvs~~tvs~~l~g~~~vs~~~~ 29 (52)
T cd01392 3 IARAAGVSVATVSRVLNGKPRVSEETR 29 (52)
T ss_pred HHHHHCcCHHHHHHHHcCCCCCCHHHH
Confidence 578899999999999987766665544
No 194
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=30.55 E-value=29 Score=21.85 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=19.1
Q ss_pred HHHHhhcCC-CcCCHHHHHHcCCcce
Q 039249 44 QIEADIRRP-KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 44 ~I~~~m~rd-~wmta~EA~eyGliD~ 68 (91)
.+.+.+... .||+++.|.++||.|.
T Consensus 25 ~l~~~~~~~~v~in~~dA~~lgi~~G 50 (115)
T cd02779 25 EIAERVPLPYIEVNPEDAKREGLKNG 50 (115)
T ss_pred HHHhhCCCCEEEECHHHHHHcCCCCC
Confidence 455544333 7999999999999986
No 195
>PF04033 DUF365: Domain of unknown function (DUF365); InterPro: IPR007176 This is an archaeal family of unknown function.; PDB: 2KKU_A.
Probab=30.55 E-value=47 Score=21.38 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=16.6
Q ss_pred CHHHHHHhhcCCCcCCHHHHHHc
Q 039249 41 TPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 41 ~~e~I~~~m~rd~wmta~EA~ey 63 (91)
.+++|-+-.....|||++|..+|
T Consensus 28 n~~ei~ekygd~lFLT~eE~r~Y 50 (97)
T PF04033_consen 28 NPEEIIEKYGDRLFLTKEELRKY 50 (97)
T ss_dssp -THHHHHHTSTTBSS-HHHHHHH
T ss_pred CHHHHHHHhCcceecCHHHHHHH
Confidence 35667777777888999998887
No 196
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=30.51 E-value=31 Score=12.55 Aligned_cols=8 Identities=50% Similarity=0.481 Sum_probs=5.1
Q ss_pred CCccCCcC
Q 039249 5 PIGRIEGQ 12 (91)
Q Consensus 5 P~~~~~G~ 12 (91)
|.+|.+|+
T Consensus 1 phgG~Wgq 8 (8)
T PF03991_consen 1 PHGGGWGQ 8 (8)
T ss_pred CCCCcCCC
Confidence 56676764
No 197
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=30.39 E-value=82 Score=15.92 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=19.8
Q ss_pred HHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 32 KLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 32 ~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
+...+. |-+.+.....+.+-.+ +.+.|++|
T Consensus 7 ~~L~~m-Gf~~~~~~~AL~~~~~-nve~A~~~ 36 (37)
T PF00627_consen 7 QQLMEM-GFSREQAREALRACNG-NVERAVDW 36 (37)
T ss_dssp HHHHHH-TS-HHHHHHHHHHTTT-SHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHHHHcCC-CHHHHHHh
Confidence 333444 7888888777777666 88888765
No 198
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=30.12 E-value=1.9e+02 Score=20.05 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCC
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEADIRRPKYFS 56 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmt 56 (91)
....+...+++++.+|.+.+.+...+....|.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (288)
T TIGR01728 215 EENPEESAKILAKELGLSQAVVEETVLNRRFLR 247 (288)
T ss_pred HHCHHHHHHHHHHHhCCCHHHHHHHHhhccccC
Confidence 334556777888999999988888777665543
No 199
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.09 E-value=49 Score=20.87 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=18.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcce
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~ 68 (91)
+.+....-.||+++.|.++|+-|.
T Consensus 24 l~~~~~~~v~i~p~~A~~~gi~~G 47 (121)
T cd02794 24 LREAFPQEVWINPLDAAARGIKDG 47 (121)
T ss_pred HHhcCCCCEEECHHHHHHcCCCCC
Confidence 333333457999999999999976
No 200
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=29.90 E-value=85 Score=19.33 Aligned_cols=37 Identities=19% Similarity=0.242 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.|..++...++. .+-.-.+++..|
T Consensus 4 k~eli~~ia~~~~~s~~~v~~vv~~-~~~~i~~~L~~g 40 (96)
T TIGR00987 4 KAEMSEYLFDELGLSKREAKELVEL-FFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHcC
Confidence 3457888899999999998887763 333445555555
No 201
>cd02790 MopB_CT_Formate-Dh_H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. This CD (MopB_CT_Formate-Dh_H) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.82 E-value=30 Score=21.34 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=14.6
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++||-|.
T Consensus 37 v~in~~dA~~lgi~~G 52 (116)
T cd02790 37 VEINPEDAKRLGIEDG 52 (116)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999964
No 202
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=29.42 E-value=1.3e+02 Score=18.48 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCC-CcCCHH
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRP-KYFSPS 58 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd-~wmta~ 58 (91)
...-..-.|+.+|.|...|+.++... -.++++
T Consensus 18 ~~~ti~dvA~~~gvS~~TVsr~L~~~~~~Vs~~ 50 (80)
T TIGR02844 18 TKATVRETAKVFGVSKSTVHKDVTERLPEINPE 50 (80)
T ss_pred CCCCHHHHHHHhCCCHHHHHHHhcCCCCCCCHH
Confidence 33345557899999999999999875 567754
No 203
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=29.41 E-value=89 Score=19.20 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 3 K~eli~~ia~~~~~s~~~~~~~v~~-~~~~i~~~L~~g 39 (90)
T PRK10753 3 KTQLIDVIADKAELSKTQAKAALES-TLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHHcC
Confidence 4557888899999999988877752 333445666555
No 204
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=29.36 E-value=53 Score=26.73 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.1
Q ss_pred CCcCCHHHHHHcCCcceeecCC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~~ 73 (91)
+.+.+|..+.+.|+||.|+++.
T Consensus 461 ~~~~~~~~~a~~g~vD~VI~P~ 482 (512)
T TIGR01117 461 EEFANPYKAAARGYVDDVIEPK 482 (512)
T ss_pred HhhcCHHHHHhcCCCCeeEChH
Confidence 3478999999999999999864
No 205
>cd07921 PCA_45_Doxase_A_like Subunit A of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and similar enzymes. This subfamily includes the A subunit of protocatechuate (PCA) 4,5-dioxygenase (LigAB) and two subfamilies of unknown function. The A subunit is the smaller, non-catalytic subunit of LigAB. PCA 4,5-dioxygenase catalyzes the oxidization and subsequent ring-opening of PCA (or 3,4-dihydroxybenzoic acid), which is an intermediate in the breakdown of lignin and other compounds. PCA 4,5-dioxygenase is one of the aromatic ring opening dioxygenases which play key roles in the degradation of aromatic compounds. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit.
Probab=28.95 E-value=69 Score=20.99 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.2
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCC
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPK 53 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~ 53 (91)
-+.|.++-|.|.++....++||.
T Consensus 36 ~eAy~~~~gLTeEe~~AV~~rD~ 58 (106)
T cd07921 36 EEAYCDKFGLTEEQKQAVLDRDW 58 (106)
T ss_pred HHHHHHHcCCCHHHHHHHHhCCH
Confidence 45788999999999999999984
No 206
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=28.76 E-value=34 Score=21.40 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=19.0
Q ss_pred HHHHhhcCC-CcCCHHHHHHcCCcce
Q 039249 44 QIEADIRRP-KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 44 ~I~~~m~rd-~wmta~EA~eyGliD~ 68 (91)
.+.+...+. .||+++.|.++||-|.
T Consensus 27 ~l~~~~~~~~v~i~p~dA~~lgi~~G 52 (122)
T cd02792 27 YLAELQPEMFVEISPELAAERGIKNG 52 (122)
T ss_pred HHHhhCCCcEEEECHHHHHHcCCCCC
Confidence 455555444 7999999999999854
No 207
>PF01515 PTA_PTB: Phosphate acetyl/butaryl transferase; InterPro: IPR002505 This entry contains both phosphate acetyltransferase 2.3.1.8 from EC: Acetyl-CoA + phosphate = CoA + acetyl phosphate and phosphate butaryltransferase 2.3.1.19 from EC: Butanoyl-CoA + phosphate = CoA + butanoyl phosphate These enzymes catalyse the transfer of an acetyl or butaryl group to orthophosphate.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 2AF3_D 1QZT_D 2AF4_D 1VMI_A 3UF6_B 3U9E_A 3TNG_A 4E4R_A 1R5J_A 1YCO_A ....
Probab=28.68 E-value=1.5e+02 Score=22.52 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=44.8
Q ss_pred CcCHHHHHHHHHHH--------------HHHHHHHHHHH-H--HhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 10 EGQATDVEIARKEI--------------KNVKAELVKLY-A--KHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 10 ~G~a~dl~~~a~~l--------------~~~~~~i~~iY-a--~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.|+..+++..++++ ....+.+.+.| . .+-|.+.+.++..+. +.-.-|-..+..|-+|.++..
T Consensus 45 vG~~~~I~~~a~~~~l~l~~~eIid~~~~~~~~~y~~~~~~lr~rKG~~~~~a~~~~~-~~~~~a~~mv~~G~aD~lv~G 123 (319)
T PF01515_consen 45 VGDREEIREIAKELGLDLDGFEIIDPEDSEKLEEYAEEYYELRQRKGMTPEEARREVR-DPNYFAAMMVRLGDADALVKG 123 (319)
T ss_dssp ES-HHHHHHHHHHTTC--TTSEEE-TTTSTTHHHHHHHHHHHHTTCTS-HHHHHHHTT-SHHHHHHHHHHTTSSSEEEE-
T ss_pred EeChHHhcchhhhcccccccceecCccccHHHHHHHHHHHHHhccccCCHHHHHHHHH-HHHHHHHHHHHcCCCCEEecC
Confidence 57888888888876 11123444444 3 345679999999999 888889999999999998865
Q ss_pred CC
Q 039249 73 EK 74 (91)
Q Consensus 73 ~~ 74 (91)
.-
T Consensus 124 ~~ 125 (319)
T PF01515_consen 124 LI 125 (319)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 208
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=94 Score=20.91 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=24.9
Q ss_pred CCHHHHHHcCCcceeecCCCCCCCchhHhHhHhh
Q 039249 55 FSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKA 88 (91)
Q Consensus 55 mta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~~ 88 (91)
+=|+.|++.| |++|+.....+.-++-+.+|+++
T Consensus 85 lia~ra~~kg-i~~vVfdr~g~~yhgRV~Ala~~ 117 (125)
T COG0256 85 LIAERALAKG-IEEVVFDRGGYKYHGRVAALADG 117 (125)
T ss_pred HHHHHHHHcC-CcEEEEcCCCCCcchHHHHHHHH
Confidence 3478899999 56666777777788888887765
No 209
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=28.04 E-value=77 Score=18.11 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.8
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcC
Q 039249 29 ELVKLYAKHFGKTPEQIEADIRR 51 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~r 51 (91)
...+.||++-|.|.+++-..+.|
T Consensus 6 ~~Ie~~A~~~~~s~~ea~~~~~~ 28 (62)
T PF12668_consen 6 FCIEEFAKKLNISGEEAYNYFKR 28 (62)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHH
Confidence 36778999999999998887764
No 210
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.97 E-value=34 Score=23.01 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=15.0
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++||.|.
T Consensus 34 v~inp~dA~~~GI~dG 49 (156)
T cd02783 34 LYMHPKTAKELGIKDG 49 (156)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999986
No 211
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=27.96 E-value=55 Score=22.03 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHhhCCCHHHHHHhhcCCCcCCH
Q 039249 33 LYAKHFGKTPEQIEADIRRPKYFSP 57 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~rd~wmta 57 (91)
=+|+.||.+...|..+..+.-|=|-
T Consensus 5 ELA~~tG~srQTINrWvRkegW~T~ 29 (122)
T PF07037_consen 5 ELAELTGYSRQTINRWVRKEGWKTE 29 (122)
T ss_pred HHHHHhCccHHHHHHHHHhcCceec
Confidence 3689999999999999999998663
No 212
>PRK10664 transcriptional regulator HU subunit beta; Provisional
Probab=27.76 E-value=82 Score=19.42 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhc
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
+..+++.+++++|.+..++...++
T Consensus 3 K~eli~~ia~~~~~s~~~~~~~v~ 26 (90)
T PRK10664 3 KSQLIDKIAAGADISKAAAGRALD 26 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 455788889999999988877665
No 213
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=27.48 E-value=60 Score=23.29 Aligned_cols=33 Identities=12% Similarity=0.284 Sum_probs=23.9
Q ss_pred CcCCHHHHHHcCCcceeecCCCCCCCchhHhHhH
Q 039249 53 KYFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLK 86 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~ 86 (91)
+..++.+|+..| +|-|+-.+......++.++.+
T Consensus 189 ~~~~~~~ai~~G-ad~iVvGR~I~~a~dP~~~a~ 221 (230)
T PRK00230 189 RVMTPAQAIAAG-SDYIVVGRPITQAADPAAAYE 221 (230)
T ss_pred HHhCHHHHHHcC-CCEEEECCcccCCCCHHHHHH
Confidence 345899999887 788888888766555554443
No 214
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=27.11 E-value=1.8e+02 Score=18.69 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCHHHHHHcCCcce
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta~EA~eyGliD~ 68 (91)
.+...|+.+.-....+.+.+.+.+|.|+.+... ++....+=-.+=|.+.||-|.
T Consensus 27 sl~~lA~~~g~S~~~l~r~Fk~~~G~s~~~~l~~~Rl~~A~~~L~~t~~~i~eIA~~~Gf~s~ 89 (127)
T PRK11511 27 SLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQ 89 (127)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCH
Confidence 455666667777778888888888887766532 222222222456777777763
No 215
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=26.86 E-value=2.1e+02 Score=22.57 Aligned_cols=46 Identities=26% Similarity=0.425 Sum_probs=31.8
Q ss_pred CCccCCcCHHHHHHHHHHHHHHH------HHHHHHHHHhhCCCHHHHHHhhcC
Q 039249 5 PIGRIEGQATDVEIARKEIKNVK------AELVKLYAKHFGKTPEQIEADIRR 51 (91)
Q Consensus 5 P~~~~~G~a~dl~~~a~~l~~~~------~~i~~iYa~~TG~~~e~I~~~m~r 51 (91)
|..|+.+ +.|+.+..+.|...| +.-.+-+|+++|+|.++++..|.-
T Consensus 262 P~~g~~~-~~D~~~L~~~l~~Yr~~FGLDd~SL~~lA~~~g~~~~~lk~~iks 313 (376)
T PF05049_consen 262 PVPGLSS-ACDLEILEKCLNQYRSSFGLDDESLQKLAQDTGKPVEELKSIIKS 313 (376)
T ss_dssp CCCSS---HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHTTS-HHHHHCTSSG
T ss_pred CCccccc-ccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHHHHcC
Confidence 4444433 677777777777755 457788999999999999987653
No 216
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=26.72 E-value=94 Score=17.42 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
+...++-+.+.+.+++.+|.|.+.+.-.+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v~V~i 43 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERVRVIV 43 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEEE
Confidence 35567778899999999999998776543
No 217
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=26.53 E-value=84 Score=17.63 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHhhCCCHHHHHHhh
Q 039249 16 VEIARKEIKNVKA-----ELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 16 l~~~a~~l~~~~~-----~i~~iYa~~TG~~~e~I~~~m 49 (91)
|-.+-..|..+.. .-..-+++.+|.+...|+.|+
T Consensus 11 L~~Y~r~L~~l~~~G~~~vSS~~La~~~gi~~~qVRKDl 49 (50)
T PF06971_consen 11 LPLYLRYLEQLKEEGVERVSSQELAEALGITPAQVRKDL 49 (50)
T ss_dssp HHHHHHHHHHHHHTT-SEE-HHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeeECHHHHHHHHCCCHHHhcccC
Confidence 3344455555554 234568899999999999986
No 218
>PHA01971 hypothetical protein
Probab=26.41 E-value=26 Score=23.59 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=20.1
Q ss_pred CCHHHHHHhhcCCCcCCHHHHH
Q 039249 40 KTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 40 ~~~e~I~~~m~rd~wmta~EA~ 61 (91)
.+++.|...+.+++||++.+.+
T Consensus 20 vT~~~Ie~~I~~e~Yfta~~gv 41 (123)
T PHA01971 20 ITPQHIESIIASEHYFTAADGV 41 (123)
T ss_pred CCHHHHHHHhhheeeeeccccc
Confidence 6999999999999999998865
No 219
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=26.24 E-value=21 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=2.9
Q ss_pred CCCcCCHHHHHHcCCcceeec
Q 039249 51 RPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I~~ 71 (91)
+-+|+|||||+-.|+.--|+.
T Consensus 17 ~~syitAEEAaGIGiL~VILg 37 (118)
T PF14991_consen 17 GHSYITAEEAAGIGILIVILG 37 (118)
T ss_dssp -----------SSS-------
T ss_pred CcceeeHHHhccceeHHHHHH
Confidence 457999999999998776654
No 220
>PTZ00273 oxidase reductase; Provisional
Probab=26.14 E-value=2.5e+02 Score=20.90 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRR 51 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r 51 (91)
-.+.+..+.+.+.++-..|.++++...|.+.+.+...+..
T Consensus 135 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 174 (320)
T PTZ00273 135 WMELMETHYRDMQALALVLLRALALAIGLREDFFDSKFME 174 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhCC
Confidence 4567889999999999999999999999999888877654
No 221
>PRK15070 propanediol utilization phosphotransacylase; Provisional
Probab=25.80 E-value=49 Score=24.25 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=16.9
Q ss_pred cCCCcCCHHHHHHcCCcce
Q 039249 50 RRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 50 ~rd~wmta~EA~eyGliD~ 68 (91)
.|--+||+++|..||+-|.
T Consensus 140 ~RHIHm~p~dA~~~gvkdg 158 (211)
T PRK15070 140 KRHIHMSPEDAEKFGVKDG 158 (211)
T ss_pred ecccCCCHHHHHHhCCCCC
Confidence 4778999999999999886
No 222
>PF14467 DUF4426: Domain of unknown function (DUF4426); PDB: 3UC2_D.
Probab=25.00 E-value=45 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=10.9
Q ss_pred CCcCCHHHHHHcCCc
Q 039249 52 PKYFSPSEAVEYGIM 66 (91)
Q Consensus 52 d~wmta~EA~eyGli 66 (91)
-+||+|+=|..|||.
T Consensus 17 StfL~PeIA~~y~i~ 31 (122)
T PF14467_consen 17 STFLTPEIARAYGIQ 31 (122)
T ss_dssp GGGS-HHHHHHTT--
T ss_pred cccCCHHHHHHcCCc
Confidence 379999999999975
No 223
>cd02784 MopB_CT_PHLH The MopB_CT_PHLH CD includes a group of related uncharacterized putative hydrogenase-like homologs (PHLH) of molybdopterin binding proteins. This CD is of the PHLH region homologous to the conserved molybdopterin-binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.00 E-value=42 Score=22.44 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=15.2
Q ss_pred CCcCCHHHHHHcCCcce
Q 039249 52 PKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 52 d~wmta~EA~eyGliD~ 68 (91)
-.||+++.|.++||.|.
T Consensus 39 ~v~InP~dA~~lGI~dG 55 (137)
T cd02784 39 AALVSPRTAEALGLLQG 55 (137)
T ss_pred eEEECHHHHHHcCCCCC
Confidence 37999999999999984
No 224
>PLN02216 protein SRG1
Probab=24.97 E-value=2.6e+02 Score=21.41 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
...+..+.+++.++-..|.+++++..|.+.+.+...+..+
T Consensus 168 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 207 (357)
T PLN02216 168 RDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDD 207 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC
Confidence 5677888999999999999999999999998888777643
No 225
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.86 E-value=43 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.083 Sum_probs=14.6
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++|+.|.
T Consensus 33 v~i~p~dA~~lgi~~G 48 (106)
T cd02789 33 CEINPEDYKLLGKPEG 48 (106)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999954
No 226
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=24.75 E-value=43 Score=21.53 Aligned_cols=16 Identities=31% Similarity=0.492 Sum_probs=15.0
Q ss_pred CcCCHHHHHHcCCcce
Q 039249 53 KYFSPSEAVEYGIMDK 68 (91)
Q Consensus 53 ~wmta~EA~eyGliD~ 68 (91)
.||+++.|.++||-|.
T Consensus 35 v~i~p~dA~~~gi~~G 50 (129)
T cd02793 35 IRINPADAAARGIADG 50 (129)
T ss_pred EEECHHHHHHcCCCCC
Confidence 7999999999999986
No 227
>PLN02704 flavonol synthase
Probab=24.71 E-value=2.8e+02 Score=20.95 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCC
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPK 53 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~ 53 (91)
-.+-+..+.+.+.++-..+.++++...|.+.+.+...+..+.
T Consensus 155 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~ 196 (335)
T PLN02704 155 YREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEE 196 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCc
Confidence 356778899999999999999999999999988887776543
No 228
>PLN02276 gibberellin 20-oxidase
Probab=24.70 E-value=2.7e+02 Score=21.35 Aligned_cols=39 Identities=8% Similarity=0.050 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 14 TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 14 ~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
.-+..+...+.++-..|.+++++..|.+.+.+...+...
T Consensus 166 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 204 (361)
T PLN02276 166 KVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKFFEDG 204 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 456788889999999999999999999988888776543
No 229
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=24.63 E-value=1.3e+02 Score=19.46 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+.+-++-..+++.=+...|.+.++|++-|..++|..+=-.+-.|
T Consensus 55 ra~a~ivkkive~garAfgVdee~iRE~~~d~ywrrGlasvl~G 98 (102)
T COG4001 55 RALASIVKKIVERGARAFGVDEEDIREQMHDQYWRRGLASVLRG 98 (102)
T ss_pred HHHHHHHHHHHHhcchhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667788999999999999998765554444
No 230
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=24.61 E-value=1.7e+02 Score=18.62 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=19.5
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Q 039249 11 GQATDVEIARKEIKNVKAELVKLY 34 (91)
Q Consensus 11 G~a~dl~~~a~~l~~~~~~i~~iY 34 (91)
=+-.||+++.+.+.+.|+++.+++
T Consensus 73 VT~eDIr~QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKARKRLAEAL 96 (96)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHC
Confidence 356899999999999999988763
No 231
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=24.08 E-value=2.4e+02 Score=21.59 Aligned_cols=40 Identities=5% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
..-+..+.+++.++-..|.++++...|.+.+-+...+...
T Consensus 156 r~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~ 195 (348)
T PLN02912 156 REVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKH 195 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 4556778889999999999999999999988777766543
No 232
>PF07553 Lipoprotein_Ltp: Host cell surface-exposed lipoprotein; InterPro: IPR011434 This domain is found as 1-3 copies in a small family of proteins of unknown function.
Probab=24.02 E-value=1.4e+02 Score=16.57 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=25.0
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCC--CcCCHHHHH
Q 039249 30 LVKLYAKHFGKTPEQIEADIRRP--KYFSPSEAV 61 (91)
Q Consensus 30 i~~iYa~~TG~~~e~I~~~m~rd--~wmta~EA~ 61 (91)
-++.|.+..+.|++.|...+.-+ -=||.++|-
T Consensus 9 ~Ak~Y~~~~~~Sk~~l~~QL~se~ge~Ft~e~A~ 42 (48)
T PF07553_consen 9 KAKSYLKTMHMSKQGLYDQLTSEYGEGFTEEEAQ 42 (48)
T ss_pred HHHHHHHhccCCHHHHHHHHHhhcccCCCHHHHH
Confidence 35668888889999999988766 468888773
No 233
>cd00093 HTH_XRE Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.
Probab=23.83 E-value=1.1e+02 Score=15.00 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=24.4
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
..-+++.+|.+...|..++...+-.+...+..+
T Consensus 15 ~~~~a~~~~~~~~~v~~~~~g~~~~~~~~~~~i 47 (58)
T cd00093 15 QEELAEKLGVSRSTISRIENGKRNPSLETLEKL 47 (58)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHHHH
Confidence 345778889999899888887767776666543
No 234
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=23.74 E-value=2.7e+02 Score=21.44 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
=.+.+..+.+++.++-..|.++++...|.+.+.+...+...
T Consensus 153 fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~~ 193 (358)
T PLN02515 153 WRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVDM 193 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcCc
Confidence 35677889999999999999999999999988887766544
No 235
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=23.74 E-value=1.5e+02 Score=16.61 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
.+++..+..+|+++. |.+++.+++
T Consensus 3 ~~~~~~~~~~y~~~f--t~~El~~i~ 26 (64)
T PF09832_consen 3 EKMIDQMAPIYAEHF--TEEELDAIL 26 (64)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHH
Confidence 456677777787765 555555543
No 236
>PRK13502 transcriptional activator RhaR; Provisional
Probab=23.54 E-value=2.3e+02 Score=20.13 Aligned_cols=42 Identities=14% Similarity=0.183 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhCCCHHHH---------HHhhcCCCcCCHHHHHHcCCcc
Q 039249 26 VKAELVKLYAKHFGKTPEQI---------EADIRRPKYFSPSEAVEYGIMD 67 (91)
Q Consensus 26 ~~~~i~~iYa~~TG~~~e~I---------~~~m~rd~wmta~EA~eyGliD 67 (91)
....+.+++.+.||.|+.+. ..++....+==.+=|.+.||-|
T Consensus 205 S~~~L~r~fk~~~G~t~~~yi~~~Rl~~A~~lL~~t~~sI~eIA~~~GF~d 255 (282)
T PRK13502 205 SERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFED 255 (282)
T ss_pred CHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHcCCCC
Confidence 45556667777777766442 2233323332355567777766
No 237
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=23.50 E-value=1.1e+02 Score=14.87 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+++.+|.+...|..+....+-.+...+..
T Consensus 13 ~~~la~~~~i~~~~i~~~~~~~~~~~~~~~~~ 44 (56)
T smart00530 13 QEELAEKLGVSRSTLSRIENGKRKPSLETLKK 44 (56)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 44677888999999988887766556665543
No 238
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=23.49 E-value=85 Score=18.41 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCC
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFS 56 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmt 56 (91)
..-+|+..|.+...|+.+=.+|.|=.
T Consensus 25 lkdIA~~Lgvs~~tIr~WK~~dkW~~ 50 (60)
T PF10668_consen 25 LKDIAEKLGVSESTIRKWKSRDKWDE 50 (60)
T ss_pred HHHHHHHHCCCHHHHHHHhhhcchhh
Confidence 34467778889999999999998843
No 239
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=23.32 E-value=1.4e+02 Score=17.98 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+++..|+.||.|.+.+..+.+
T Consensus 8 e~i~~iA~~t~~P~e~V~~my~ 29 (66)
T PF12085_consen 8 EVIRSIAEETGTPAETVRRMYD 29 (66)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 4566778999999999988765
No 240
>PF06152 Phage_min_cap2: Phage minor capsid protein 2; InterPro: IPR009319 This entry is represented by Bacteriophage A118, Gp4, the minor capsid protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=23.30 E-value=1.3e+02 Score=23.31 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
.....+|-.+++.+.+++++.+|.+.++|.+++...
T Consensus 50 ~~kL~~lg~~~~~i~k~I~~~~~~s~~~i~~~i~~a 85 (361)
T PF06152_consen 50 IEKLQELGMLNKEIKKIIAKYLGISEEEIRELIENA 85 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999999999999999998753
No 241
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=23.07 E-value=2.4e+02 Score=20.43 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHhhcC
Q 039249 26 VKAELVKLYAKHFGKTPEQIEADIRR 51 (91)
Q Consensus 26 ~~~~i~~iYa~~TG~~~e~I~~~m~r 51 (91)
..+...+++++.+|.+.+.+...+..
T Consensus 243 ~p~ea~~i~a~~~~~~~~~~~~~~~~ 268 (314)
T PRK11553 243 QREQSIALLAKTMGLPAAVIASYLDH 268 (314)
T ss_pred CHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 34557788899999999999888765
No 242
>PF04867 DUF643: Protein of unknown function (DUF643); InterPro: IPR006951 These are proteins of unknown function found in Borrelia burgdorferi (Lyme disease spirochete)
Probab=23.04 E-value=95 Score=20.45 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.4
Q ss_pred HHHHHhhCCCHHHHHHhh
Q 039249 32 KLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 32 ~iYa~~TG~~~e~I~~~m 49 (91)
+-|..+||+|.++|-.+.
T Consensus 44 QeykrKtGKSi~eiind~ 61 (114)
T PF04867_consen 44 QEYKRKTGKSINEIINDI 61 (114)
T ss_pred HHHHHhhcccHHHHHHHH
Confidence 447789999999887764
No 243
>PLN02904 oxidoreductase
Probab=22.70 E-value=3e+02 Score=21.13 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
-..-+..+.+.+.++-..+.+++++..|.+.+-+...+...
T Consensus 166 fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 206 (357)
T PLN02904 166 YKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEG 206 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCc
Confidence 35677888899999999999999999999998887776554
No 244
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=22.61 E-value=3.2e+02 Score=20.71 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
..-+..+.+.+.++-..|.++++...|.+.+-+...+...
T Consensus 149 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 188 (337)
T PLN02639 149 KEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQ 188 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 4567888899999999999999999999988877766543
No 245
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=22.58 E-value=1.2e+02 Score=20.54 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
-..++++.++.||+|.++|...+.+.
T Consensus 48 ~~~lv~a~a~~~g~~~~~~l~~fG~~ 73 (171)
T PF07700_consen 48 TYKLVEAAAEVTGISVEELLEEFGEY 73 (171)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34678888999999999999988753
No 246
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=22.42 E-value=1.2e+02 Score=16.06 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCCCHHHHHHhh
Q 039249 29 ELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m 49 (91)
.-..-+|..||.+...|..+.
T Consensus 28 ~~~~~la~~~~l~~~qV~~WF 48 (59)
T cd00086 28 EEREELAKELGLTERQVKIWF 48 (59)
T ss_pred HHHHHHHHHHCcCHHHHHHHH
Confidence 345567777888888887664
No 247
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=22.27 E-value=1.8e+02 Score=16.98 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhCCCHHHHHHhhc-CCC
Q 039249 23 IKNVKAELVKLYAKHFGKTPEQIEADIR-RPK 53 (91)
Q Consensus 23 l~~~~~~i~~iYa~~TG~~~e~I~~~m~-rd~ 53 (91)
+...|....-+.-+.+|.|..+|-..+. ||+
T Consensus 29 i~~aR~va~yL~r~~~~~sl~~Ig~~fg~rdH 60 (70)
T PF08299_consen 29 IVEARQVAMYLARELTGLSLSEIGRYFGGRDH 60 (70)
T ss_dssp HHHHHHHHHHHHHHHS---HHHHHHHCTSSTH
T ss_pred hcchHHHHHHHHHHHhCCCHHHHHHHhCCCCH
Confidence 3344433333333568999999999998 874
No 248
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=21.98 E-value=1.4e+02 Score=15.78 Aligned_cols=26 Identities=4% Similarity=0.282 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
+.+...|.+.+.+..-.|..+|.+.+
T Consensus 2 D~~D~~Il~~Lq~d~r~s~~~la~~l 27 (42)
T PF13404_consen 2 DELDRKILRLLQEDGRRSYAELAEEL 27 (42)
T ss_dssp -HHHHHHHHHHHH-TTS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 44555566666655555555555443
No 249
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=21.92 E-value=81 Score=25.57 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.+..+|+..||.|.++.+++|-
T Consensus 92 ~~~~~~a~m~g~t~e~f~~~~~ 113 (444)
T PRK13372 92 SFQQMAGSMTGLSEAAYRDMMI 113 (444)
T ss_pred cHHHHHHhhcCCCHHHHHHHHH
Confidence 4788999999999999999884
No 250
>cd02432 Nodulin-21_like_1 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_1: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=21.69 E-value=3.2e+02 Score=19.68 Aligned_cols=42 Identities=21% Similarity=0.326 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhCCCHHHHHHh---hcCCCcCCHHHHHHcCCcce
Q 039249 26 VKAELVKLYAKHFGKTPEQIEAD---IRRPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 26 ~~~~i~~iYa~~TG~~~e~I~~~---m~rd~wmta~EA~eyGliD~ 68 (91)
-++.+.++|..+ |.+++..+.. +-++.|+..---.|+|+.+.
T Consensus 87 e~~el~~~~~~~-G~~~~~a~~~a~~l~~~~~~~~~~~~e~g~~~~ 131 (218)
T cd02432 87 ELEELADIYEER-GLSPELARQVADELMAKDALEAHARDELGITEG 131 (218)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHhhcChHHHHHHHhcCCCCC
Confidence 345688889777 8887666554 33566766666677887664
No 251
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=21.66 E-value=62 Score=24.69 Aligned_cols=71 Identities=11% Similarity=0.139 Sum_probs=47.5
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCC-cCCHHHHHHcCCcceeecCCCCCCCchhHhHhHhh
Q 039249 10 EGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPK-YFSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKKA 88 (91)
Q Consensus 10 ~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~-wmta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~~ 88 (91)
.|--+-++..++.+++++.. .+....--|-+.|.|+. |+...-|+.-| +|-|+-|+.......+.+.+++.
T Consensus 136 ~Gf~TA~~~~~~~i~~i~~t-------a~s~~rv~ivEvMGR~~G~LA~~~ala~g-a~~iliPE~~~~~~~~~~~i~~~ 207 (317)
T cd00763 136 IGFDTALNTVVEAIDRIRDT-------SSSHQRISVVEVMGRHCGDIALAAGIAGG-AEFIVIPEAEFDREEVANRIKAG 207 (317)
T ss_pred CCHHHHHHHHHHHHHHHHHH-------HhcCCCEEEEEeCCCChHHHHHHHHHHcC-CCEEEeCCCCCCHHHHHHHHHHH
Confidence 45555566666555555421 11122334778999985 88888888888 99999988877767777777653
No 252
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=21.51 E-value=1.5e+02 Score=18.20 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~-~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVEL-FFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHcC
Confidence 4557888889999999988887752 333345555555
No 253
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.50 E-value=2.2e+02 Score=20.99 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=25.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 039249 10 EGQATDVEIARKEIKNVKAELVKLYAKHFG 39 (91)
Q Consensus 10 ~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG 39 (91)
.|+....++.|+.|-++|..+.+.+--++.
T Consensus 52 ~gq~~A~KimAkdLvRtR~~i~kf~~~kaq 81 (224)
T KOG3230|consen 52 QGQMDAVKIMAKDLVRTRRYIKKFQNMKAQ 81 (224)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999888766543
No 254
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=21.49 E-value=2.9e+02 Score=21.25 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
..-+..+.+++.++-..+.+++++..|.+.+.+...+...
T Consensus 170 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~ 209 (361)
T PLN02758 170 SETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEA 209 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCc
Confidence 4567888889999999999999999999988887776543
No 255
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.40 E-value=1.6e+02 Score=16.04 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=22.4
Q ss_pred HHHHhhCCCHHHHHHhhcCCCcCCHHH
Q 039249 33 LYAKHFGKTPEQIEADIRRPKYFSPSE 59 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~rd~wmta~E 59 (91)
-.|+.+|.+...|...++.....+++-
T Consensus 4 dIA~~agvS~~TVSr~ln~~~~vs~~t 30 (46)
T PF00356_consen 4 DIAREAGVSKSTVSRVLNGPPRVSEET 30 (46)
T ss_dssp HHHHHHTSSHHHHHHHHTTCSSSTHHH
T ss_pred HHHHHHCcCHHHHHHHHhCCCCCCHHH
Confidence 368889999999999998887777753
No 256
>PF14444 S1-like: S1-like
Probab=21.39 E-value=30 Score=20.37 Aligned_cols=8 Identities=38% Similarity=0.983 Sum_probs=6.6
Q ss_pred HcCCccee
Q 039249 62 EYGIMDKV 69 (91)
Q Consensus 62 eyGliD~I 69 (91)
+|||||+=
T Consensus 14 ~yG~IDe~ 21 (58)
T PF14444_consen 14 DYGFIDED 21 (58)
T ss_pred CcceEccc
Confidence 69999983
No 257
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.15 E-value=63 Score=17.12 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=9.8
Q ss_pred hcCCCc-CCHHHHHHc
Q 039249 49 IRRPKY-FSPSEAVEY 63 (91)
Q Consensus 49 m~rd~w-mta~EA~ey 63 (91)
|+-+.+ ||+++|+|.
T Consensus 16 ~~pe~l~LtpEDAvEa 31 (35)
T PF08383_consen 16 MNPEALGLTPEDAVEA 31 (35)
T ss_pred cChhhcCCCHHHHHHH
Confidence 333444 888888875
No 258
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.10 E-value=2e+02 Score=21.29 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.4
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039249 10 EGQATDVEIARKEIKNVKAELVKLYAKHF 38 (91)
Q Consensus 10 ~G~a~dl~~~a~~l~~~~~~i~~iYa~~T 38 (91)
.|+..-+++.|+++-+.|+.+.++|..+.
T Consensus 54 knD~~t~~iLAKEiv~srk~v~Rly~sKA 82 (227)
T KOG3229|consen 54 KNDKDTCRILAKEIVQSRKAVKRLYESKA 82 (227)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 46778899999999999999999998764
No 259
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=20.82 E-value=52 Score=27.26 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCC------CcCCHHHHHHcCCcc
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRP------KYFSPSEAVEYGIMD 67 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd------~wmta~EA~eyGliD 67 (91)
=|+.+.++|.+++-....+-++-+-+..++|-.++.++ .|.||+.|..-||-|
T Consensus 73 LIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~ 131 (641)
T KOG0352|consen 73 LIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQK 131 (641)
T ss_pred HHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHH
Confidence 35777888888876666666677777888899999876 599999998888766
No 260
>PRK00982 acpP acyl carrier protein; Provisional
Probab=20.62 E-value=77 Score=18.31 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHH
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEA 47 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~ 47 (91)
..+.+.+.+++++.+|.+.+.|..
T Consensus 2 ~~i~~~l~~~l~~~l~~~~~~i~~ 25 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGVDEEEVTP 25 (78)
T ss_pred hHHHHHHHHHHHHHHCCCHHHCCC
Confidence 456778889999999998776544
No 261
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=20.56 E-value=1.7e+02 Score=16.06 Aligned_cols=29 Identities=17% Similarity=0.425 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCHHHHHHhh
Q 039249 21 KEIKNVKAELVKLYAKHFGKTPEQIEADI 49 (91)
Q Consensus 21 ~~l~~~~~~i~~iYa~~TG~~~e~I~~~m 49 (91)
+....+-+.+.+.+.+.+|.+.+.+.-.+
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v~V~i 43 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESVDIII 43 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHEEEEE
Confidence 34566777889999999999998775443
No 262
>PRK13500 transcriptional activator RhaR; Provisional
Probab=20.37 E-value=2.7e+02 Score=20.45 Aligned_cols=48 Identities=17% Similarity=0.168 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCHHHHH---------HhhcCCCcCCHHHHHHcCCcc
Q 039249 20 RKEIKNVKAELVKLYAKHFGKTPEQIE---------ADIRRPKYFSPSEAVEYGIMD 67 (91)
Q Consensus 20 a~~l~~~~~~i~~iYa~~TG~~~e~I~---------~~m~rd~wmta~EA~eyGliD 67 (91)
|+.+.-....+.+++.+.||.|+-+.. .++....+==.+=|.+.||-|
T Consensus 229 A~~~~iS~~~L~r~FK~~tG~T~~~yi~~~RL~~A~~LL~~t~~sI~eIA~~~GF~d 285 (312)
T PRK13500 229 CDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFED 285 (312)
T ss_pred HHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCC
Confidence 333333455566666666776654321 222222222244566667666
No 263
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=20.23 E-value=1.5e+02 Score=15.49 Aligned_cols=34 Identities=12% Similarity=0.126 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
..+.-|..-||.+.+.-...+++-.| +-+.|+..
T Consensus 2 e~i~~F~~iTg~~~~~A~~~L~~~~w-dle~Av~~ 35 (43)
T PF14555_consen 2 EKIAQFMSITGADEDVAIQYLEANNW-DLEAAVNA 35 (43)
T ss_dssp HHHHHHHHHH-SSHHHHHHHHHHTTT--HHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHcCC-CHHHHHHH
Confidence 35566788889888888888877666 45555544
No 264
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=20.04 E-value=1.2e+02 Score=21.00 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=24.7
Q ss_pred HHHHHHHh-hCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 30 LVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 30 i~~iYa~~-TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
-+++.|+. -|+++++|++-.+=+.=||++|-.
T Consensus 114 gCKivaemirgkSpeeir~tfni~ndfTpEEe~ 146 (158)
T COG5201 114 GCKIVAEMIRGKSPEEIRETFNIENDFTPEEER 146 (158)
T ss_pred HHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHH
Confidence 34455543 479999999999999999998853
No 265
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=20.02 E-value=87 Score=23.68 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=19.0
Q ss_pred CCcCCHHHHHHcCCcceeecCCC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~~~ 74 (91)
+-|-+|+=+.+.|+||.|+++..
T Consensus 245 e~~q~ae~~~~~G~vD~iv~~~~ 267 (285)
T TIGR00515 245 EGFQTSEFLLEHGAIDMIVHRPE 267 (285)
T ss_pred hhcCCHHHHHhCCCCcEEECcHH
Confidence 45789998999999999987643
No 266
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=20.01 E-value=1.2e+02 Score=22.98 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCcCCHHHHHHcCCcceeecCC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~~ 73 (91)
+-+-+|+-+.+.|+||.|+++.
T Consensus 246 e~~~~ae~~~~~G~vD~Vv~~~ 267 (292)
T PRK05654 246 EGFQRAEFLLEHGAIDMIVHRR 267 (292)
T ss_pred hhhcCHHHHHhCCCCcEEECHH
Confidence 3477899999999999998864
Done!