Query 039249
Match_columns 91
No_of_seqs 151 out of 1059
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gm2_A ATP-dependent CLP prote 99.9 1.8E-27 6.2E-32 169.7 5.5 72 1-72 132-204 (205)
2 3qwd_A ATP-dependent CLP prote 99.9 1.8E-24 6.2E-29 153.5 6.4 75 1-75 121-195 (203)
3 3p2l_A ATP-dependent CLP prote 99.9 2.8E-24 9.5E-29 152.4 6.2 74 1-74 124-197 (201)
4 1tg6_A Putative ATP-dependent 99.8 4.2E-21 1.4E-25 141.9 8.6 75 1-75 176-250 (277)
5 2f6i_A ATP-dependent CLP prote 99.8 2.1E-20 7.1E-25 133.4 7.4 74 1-74 132-205 (215)
6 1yg6_A ATP-dependent CLP prote 99.8 1.3E-20 4.5E-25 131.8 5.9 73 1-73 120-192 (193)
7 2cby_A ATP-dependent CLP prote 99.8 3.2E-19 1.1E-23 126.2 6.3 74 1-74 121-194 (208)
8 1y7o_A ATP-dependent CLP prote 99.8 6.6E-19 2.2E-23 125.5 6.9 74 1-74 139-214 (218)
9 3viv_A 441AA long hypothetical 99.3 1.9E-12 6.5E-17 93.1 3.2 69 1-72 104-174 (230)
10 3bf0_A Protease 4; bacterial, 98.7 1E-08 3.4E-13 81.6 5.8 56 17-72 201-263 (593)
11 3rst_A Signal peptide peptidas 97.9 3.4E-05 1.1E-09 54.9 7.3 58 13-71 155-212 (240)
12 3bf0_A Protease 4; bacterial, 97.4 0.00037 1.3E-08 55.4 6.9 59 12-71 445-503 (593)
13 3ot6_A Enoyl-COA hydratase/iso 91.5 0.2 6.7E-06 34.9 3.9 32 43-74 154-185 (232)
14 3lao_A Enoyl-COA hydratase/iso 91.2 0.13 4.3E-06 36.4 2.7 31 44-74 165-195 (258)
15 1uiy_A Enoyl-COA hydratase; ly 91.2 0.077 2.6E-06 37.3 1.5 30 45-74 154-183 (253)
16 3r6h_A Enoyl-COA hydratase, EC 90.5 0.1 3.6E-06 36.4 1.7 29 45-73 156-184 (233)
17 2fbm_A Y chromosome chromodoma 90.1 0.19 6.4E-06 36.4 2.8 30 45-74 180-209 (291)
18 1sg4_A 3,2-trans-enoyl-COA iso 90.1 0.2 6.8E-06 35.4 2.9 28 45-72 160-187 (260)
19 2uzf_A Naphthoate synthase; ly 90.0 0.13 4.5E-06 36.7 1.9 29 45-73 168-196 (273)
20 2j5g_A ALR4455 protein; enzyme 89.9 0.11 3.8E-06 37.1 1.4 29 45-73 178-206 (263)
21 3r9q_A Enoyl-COA hydratase/iso 89.7 0.14 4.8E-06 36.4 1.8 30 45-74 162-191 (262)
22 3swx_A Probable enoyl-COA hydr 89.3 0.36 1.2E-05 34.2 3.8 31 44-74 162-192 (265)
23 2f6q_A Peroxisomal 3,2-trans-e 89.2 0.37 1.3E-05 34.5 3.7 29 45-73 182-210 (280)
24 1mj3_A Enoyl-COA hydratase, mi 89.0 0.25 8.4E-06 34.9 2.7 29 45-73 158-186 (260)
25 3qxi_A Enoyl-COA hydratase ECH 89.0 0.28 9.5E-06 34.9 3.0 31 44-74 162-192 (265)
26 4f47_A Enoyl-COA hydratase ECH 88.9 0.18 6.1E-06 36.0 1.9 30 45-74 176-205 (278)
27 2ppy_A Enoyl-COA hydratase; be 88.7 0.27 9.2E-06 34.8 2.7 29 45-73 163-191 (265)
28 3p5m_A Enoyl-COA hydratase/iso 88.3 0.3 1E-05 34.4 2.7 30 45-74 153-182 (255)
29 2a7k_A CARB; crotonase, antibi 88.3 0.3 1E-05 34.2 2.7 28 45-72 154-181 (250)
30 3rsi_A Putative enoyl-COA hydr 88.2 0.34 1.2E-05 34.3 3.0 31 44-74 162-192 (265)
31 3rrv_A Enoyl-COA hydratase/iso 88.0 0.15 5E-06 36.6 1.0 28 43-70 181-208 (276)
32 3qk8_A Enoyl-COA hydratase ECH 88.0 0.14 4.6E-06 36.6 0.8 29 45-73 168-196 (272)
33 3qmj_A Enoyl-COA hydratase, EC 87.9 0.32 1.1E-05 34.2 2.7 29 45-73 160-188 (256)
34 3oc7_A Enoyl-COA hydratase; se 87.8 0.19 6.6E-06 35.6 1.5 26 44-69 167-192 (267)
35 3trr_A Probable enoyl-COA hydr 87.8 0.31 1.1E-05 34.4 2.5 32 43-74 152-183 (256)
36 3sll_A Probable enoyl-COA hydr 87.8 0.15 5.2E-06 36.8 0.9 29 46-74 186-214 (290)
37 3isa_A Putative enoyl-COA hydr 87.6 0.33 1.1E-05 34.2 2.6 30 44-73 155-184 (254)
38 3t3w_A Enoyl-COA hydratase; ss 87.6 0.15 5E-06 36.6 0.8 29 46-74 177-205 (279)
39 2ej5_A Enoyl-COA hydratase sub 87.6 0.27 9.2E-06 34.6 2.1 29 45-73 155-183 (257)
40 3fdu_A Putative enoyl-COA hydr 87.5 0.17 5.7E-06 36.0 1.0 26 46-71 161-186 (266)
41 3qre_A Enoyl-COA hydratase, EC 87.4 0.17 5.7E-06 36.8 0.9 31 44-74 190-220 (298)
42 4fzw_A 2,3-dehydroadipyl-COA h 87.4 0.36 1.2E-05 34.1 2.7 30 45-74 156-185 (258)
43 1wz8_A Enoyl-COA hydratase; ly 87.3 0.29 9.8E-06 34.7 2.1 29 45-73 165-193 (264)
44 1pjh_A Enoyl-COA isomerase; EC 87.3 0.47 1.6E-05 33.8 3.3 29 45-73 174-202 (280)
45 1szo_A 6-oxocamphor hydrolase; 87.2 0.39 1.3E-05 34.0 2.8 28 45-72 169-196 (257)
46 2pbp_A Enoyl-COA hydratase sub 87.2 0.32 1.1E-05 34.3 2.3 28 45-72 156-183 (258)
47 3hin_A Putative 3-hydroxybutyr 87.1 0.38 1.3E-05 34.4 2.7 31 44-74 166-196 (275)
48 3g64_A Putative enoyl-COA hydr 87.0 0.36 1.2E-05 34.4 2.6 29 46-74 176-204 (279)
49 1hzd_A AUH, AU-binding protein 87.0 0.35 1.2E-05 34.4 2.5 30 45-74 166-195 (272)
50 3r9t_A ECHA1_1; ssgcid, seattl 87.0 0.41 1.4E-05 34.0 2.8 31 44-74 161-191 (267)
51 1ef8_A Methylmalonyl COA decar 87.0 0.38 1.3E-05 33.9 2.6 29 44-72 156-184 (261)
52 4eml_A Naphthoate synthase; 1, 86.9 0.17 5.8E-06 36.2 0.8 29 46-74 171-199 (275)
53 3gow_A PAAG, probable enoyl-CO 86.8 0.32 1.1E-05 34.2 2.1 30 45-74 152-181 (254)
54 3m6n_A RPFF protein; enoyl-COA 86.7 0.27 9.1E-06 35.7 1.7 30 45-74 201-230 (305)
55 3moy_A Probable enoyl-COA hydr 86.6 0.29 1E-05 34.7 1.9 29 45-73 161-189 (263)
56 3hrx_A Probable enoyl-COA hydr 86.6 0.31 1.1E-05 34.2 2.0 29 46-74 153-181 (254)
57 2q35_A CURF; crotonase, lyase; 86.4 0.31 1.1E-05 34.1 1.9 28 45-72 151-178 (243)
58 2gtr_A CDY-like, chromodomain 86.4 0.37 1.3E-05 34.0 2.3 28 46-73 163-190 (261)
59 3pe8_A Enoyl-COA hydratase; em 86.3 0.32 1.1E-05 34.5 1.9 29 45-73 153-181 (256)
60 3kqf_A Enoyl-COA hydratase/iso 86.3 0.33 1.1E-05 34.4 2.0 29 45-73 163-191 (265)
61 3qxz_A Enoyl-COA hydratase/iso 86.2 0.43 1.5E-05 33.8 2.6 26 47-72 161-186 (265)
62 3tlf_A Enoyl-COA hydratase/iso 86.2 0.23 7.9E-06 35.3 1.1 20 54-73 181-200 (274)
63 3njd_A Enoyl-COA hydratase; ss 86.0 0.23 7.9E-06 36.5 1.1 31 43-73 213-243 (333)
64 4fzw_C 1,2-epoxyphenylacetyl-C 86.0 0.38 1.3E-05 34.3 2.2 30 45-74 172-201 (274)
65 2vx2_A Enoyl-COA hydratase dom 85.8 0.4 1.4E-05 34.5 2.2 30 44-73 185-214 (287)
66 1dci_A Dienoyl-COA isomerase; 85.7 0.28 9.7E-06 34.8 1.4 29 44-72 168-196 (275)
67 3pea_A Enoyl-COA hydratase/iso 85.7 0.4 1.4E-05 33.9 2.1 29 45-73 159-187 (261)
68 4di1_A Enoyl-COA hydratase ECH 85.6 0.36 1.2E-05 34.6 2.0 29 45-73 176-204 (277)
69 3myb_A Enoyl-COA hydratase; ss 85.5 0.42 1.4E-05 34.4 2.2 30 44-73 178-207 (286)
70 3i47_A Enoyl COA hydratase/iso 85.4 0.4 1.4E-05 34.1 2.1 29 45-73 159-187 (268)
71 3h81_A Enoyl-COA hydratase ECH 85.4 0.38 1.3E-05 34.5 2.0 30 45-74 176-205 (278)
72 3hp0_A Putative polyketide bio 85.3 0.58 2E-05 33.3 2.9 28 45-72 160-187 (267)
73 1nzy_A Dehalogenase, 4-chlorob 85.1 0.48 1.7E-05 33.5 2.4 26 47-72 163-188 (269)
74 3ksx_A Nitrate transport prote 84.6 4.7 0.00016 28.1 7.4 50 22-71 241-305 (324)
75 2j5i_A P-hydroxycinnamoyl COA 84.4 0.51 1.7E-05 33.6 2.2 28 45-72 167-194 (276)
76 3lke_A Enoyl-COA hydratase; ny 84.2 0.55 1.9E-05 33.2 2.3 27 45-71 162-188 (263)
77 3l3s_A Enoyl-COA hydratase/iso 84.2 0.49 1.7E-05 33.5 2.1 29 44-72 163-191 (263)
78 3t89_A 1,4-dihydroxy-2-naphtho 84.0 0.52 1.8E-05 34.0 2.1 29 46-74 185-213 (289)
79 4hdt_A 3-hydroxyisobutyryl-COA 83.0 0.46 1.6E-05 35.3 1.6 24 51-74 171-194 (353)
80 3gkb_A Putative enoyl-COA hydr 82.4 0.61 2.1E-05 33.6 2.0 28 46-73 169-196 (287)
81 3h0u_A Putative enoyl-COA hydr 82.4 0.61 2.1E-05 33.6 2.0 29 45-73 165-193 (289)
82 3t8b_A 1,4-dihydroxy-2-naphtho 81.1 0.6 2.1E-05 34.5 1.6 28 47-74 231-258 (334)
83 3he2_A Enoyl-COA hydratase ECH 80.9 0.82 2.8E-05 32.6 2.2 27 45-71 168-194 (264)
84 3ju1_A Enoyl-COA hydratase/iso 79.6 0.71 2.4E-05 35.0 1.6 28 47-74 204-231 (407)
85 2f9i_A Acetyl-coenzyme A carbo 79.6 1 3.5E-05 33.4 2.4 21 53-73 257-277 (327)
86 2f9y_A Acetyl-COA carboxylase, 77.9 0.91 3.1E-05 33.9 1.7 21 53-73 271-291 (339)
87 3bpt_A 3-hydroxyisobutyryl-COA 77.9 0.64 2.2E-05 34.5 0.9 29 46-74 163-191 (363)
88 2i6e_A Hypothetical protein; N 77.7 5.6 0.00019 28.4 5.8 55 16-71 223-288 (301)
89 3zwc_A Peroxisomal bifunctiona 72.8 0.88 3E-05 37.2 0.5 28 46-73 168-195 (742)
90 2w3p_A Benzoyl-COA-dihydrodiol 72.1 2.7 9.2E-05 33.6 3.1 29 44-72 194-222 (556)
91 1wdk_A Fatty oxidation complex 71.0 2 6.8E-05 34.7 2.1 27 46-72 165-191 (715)
92 2wtb_A MFP2, fatty acid multif 69.8 2.4 8.2E-05 34.3 2.4 28 46-73 164-191 (725)
93 2nxo_A Hypothetical protein SC 64.0 7.8 0.00027 26.9 3.9 47 24-70 219-276 (291)
94 2np9_A DPGC; protein inhibitor 62.0 1.5 5.2E-05 33.8 -0.2 27 46-72 345-371 (440)
95 3v7d_A Suppressor of kinetocho 57.4 38 0.0013 22.3 6.4 50 12-61 105-157 (169)
96 3mn2_A Probable ARAC family tr 56.1 28 0.00096 20.4 5.2 53 16-68 21-84 (108)
97 2x26_A Periplasmic aliphatic s 45.8 64 0.0022 21.7 6.1 43 28-70 221-278 (308)
98 3lvy_A Carboxymuconolactone de 44.0 17 0.00057 24.6 2.8 51 36-87 113-164 (207)
99 3fx7_A Putative uncharacterize 43.3 46 0.0016 20.5 4.4 29 8-36 3-31 (94)
100 2p1m_A SKP1-like protein 1A; F 43.0 56 0.0019 21.1 5.2 50 11-60 96-148 (160)
101 2ast_A S-phase kinase-associat 40.1 71 0.0024 20.4 5.4 49 11-59 97-148 (159)
102 1b8z_A Protein (histonelike pr 40.1 33 0.0011 19.9 3.4 37 27-64 3-39 (90)
103 1b0n_B Protein (SINI protein); 38.9 20 0.0007 20.0 2.1 16 35-50 22-37 (57)
104 1mul_A NS2, HU-2, DNA binding 37.9 37 0.0013 19.7 3.4 37 27-64 3-39 (90)
105 1p71_A DNA-binding protein HU; 37.1 38 0.0013 19.9 3.4 37 27-64 3-39 (94)
106 2f9y_B Acetyl-coenzyme A carbo 36.7 13 0.00046 27.0 1.4 21 52-72 243-263 (304)
107 3oio_A Transcriptional regulat 35.5 53 0.0018 19.3 3.9 52 15-67 25-86 (113)
108 2o97_B NS1, HU-1, DNA-binding 35.3 37 0.0013 19.8 3.1 37 27-64 3-39 (90)
109 3oou_A LIN2118 protein; protei 35.1 56 0.0019 19.0 3.9 51 16-67 24-84 (108)
110 2k9q_A Uncharacterized protein 34.3 57 0.002 17.6 4.3 31 31-61 18-48 (77)
111 3rhi_A DNA-binding protein HU; 34.1 29 0.00098 20.5 2.4 37 27-64 6-42 (93)
112 3c4i_A DNA-binding protein HU 34.1 45 0.0015 19.8 3.4 37 27-64 3-39 (99)
113 2wiu_B HTH-type transcriptiona 34.0 60 0.002 17.7 4.2 32 30-61 27-58 (88)
114 2o4d_A Hypothetical protein PA 33.9 23 0.00078 23.0 2.1 38 35-72 79-118 (165)
115 2x7q_A Ca3427, possible thiami 33.7 1.1E+02 0.0037 21.0 5.8 33 24-56 234-266 (321)
116 1owf_A IHF-alpha, integration 33.1 49 0.0017 19.6 3.4 37 27-64 5-41 (99)
117 3b7h_A Prophage LP1 protein 11 32.7 59 0.002 17.2 4.8 31 31-61 23-54 (78)
118 2k9s_A Arabinose operon regula 30.0 59 0.002 18.9 3.4 51 16-67 23-83 (107)
119 3lsg_A Two-component response 29.7 58 0.002 18.7 3.3 51 16-67 22-82 (103)
120 2ict_A Antitoxin HIGA; helix-t 28.9 81 0.0028 17.7 4.8 32 31-62 24-55 (94)
121 2xi8_A Putative transcription 28.8 63 0.0022 16.4 3.9 31 31-61 17-47 (66)
122 1adr_A P22 C2 repressor; trans 28.6 70 0.0024 16.8 4.9 32 31-62 21-52 (76)
123 3bs3_A Putative DNA-binding pr 27.8 73 0.0025 16.8 3.9 31 31-61 26-56 (76)
124 1y7y_A C.AHDI; helix-turn-heli 27.7 72 0.0024 16.6 4.8 45 17-61 12-59 (74)
125 1pix_A Glutaconyl-COA decarbox 26.8 42 0.0014 26.7 2.9 20 54-73 527-546 (587)
126 3g3d_A UMP synthase, uridine 5 26.8 19 0.00065 26.5 0.8 33 51-84 261-294 (312)
127 2r1j_L Repressor protein C2; p 26.6 71 0.0024 16.3 4.7 31 31-61 21-51 (68)
128 2kii_A Putative uncharacterize 26.4 42 0.0014 22.1 2.4 29 28-56 48-76 (181)
129 3uc2_A Hypothetical protein wi 26.3 30 0.001 22.7 1.6 15 52-66 37-51 (139)
130 3frt_A Charged multivesicular 26.3 1E+02 0.0035 21.4 4.5 29 10-38 50-78 (218)
131 1ify_A HHR23A, UV excision rep 26.2 49 0.0017 17.3 2.3 25 38-63 18-42 (49)
132 1owf_B IHF-beta, integration H 26.1 74 0.0025 18.5 3.3 37 27-64 3-40 (94)
133 1lm5_A Subdomain of desmoplaki 25.8 23 0.00079 24.5 1.1 19 51-69 57-75 (214)
134 3omt_A Uncharacterized protein 25.4 83 0.0028 16.6 3.9 32 31-62 24-55 (73)
135 3i9v_4 NADH-quinone oxidoreduc 25.1 2.2E+02 0.0075 21.4 7.2 57 14-72 185-241 (409)
136 3kz3_A Repressor protein CI; f 25.0 90 0.0031 16.9 5.5 32 31-62 28-59 (80)
137 2ki8_A Tungsten formylmethanof 24.8 26 0.00088 22.5 1.1 18 51-68 53-70 (146)
138 2kpj_A SOS-response transcript 24.4 91 0.0031 17.5 3.5 31 31-61 25-55 (94)
139 3sj5_A Methyl-accepting chemot 23.7 76 0.0026 21.1 3.3 27 28-54 49-75 (188)
140 1uxc_A FRUR (1-57), fructose r 23.5 89 0.003 17.2 3.1 28 33-60 5-35 (65)
141 1x0u_A Hypothetical methylmalo 23.3 27 0.00093 27.3 1.1 20 53-72 472-491 (522)
142 1xn7_A Hypothetical protein YH 22.9 29 0.00098 20.2 0.9 22 29-50 17-38 (78)
143 3f6w_A XRE-family like protein 22.6 1E+02 0.0035 16.6 5.3 32 31-62 30-61 (83)
144 1vrg_A Propionyl-COA carboxyla 22.4 45 0.0015 26.1 2.2 21 52-72 476-496 (527)
145 3trb_A Virulence-associated pr 22.3 1.3E+02 0.0043 17.8 3.9 33 31-63 30-62 (104)
146 3tfg_A ALR2278 protein; heme-b 22.3 84 0.0029 20.8 3.3 27 28-54 49-75 (189)
147 2b5a_A C.BCLI; helix-turn-heli 22.2 97 0.0033 16.3 4.6 31 31-61 26-56 (77)
148 3ic3_A Putative pyruvate dehyd 22.1 1.3E+02 0.0045 18.6 3.9 25 22-46 52-76 (101)
149 1dw9_A Cyanate lyase; cyanate 22.0 70 0.0024 21.3 2.8 33 31-63 29-61 (156)
150 2de3_A Dibenzothiophene desulf 21.2 2.1E+02 0.0072 20.4 5.5 25 28-52 288-312 (365)
151 1bl0_A Protein (multiple antib 21.0 60 0.0021 19.6 2.3 52 16-67 30-90 (129)
152 1on3_A Methylmalonyl-COA carbo 20.9 43 0.0015 26.2 1.8 21 52-72 472-492 (523)
153 2bzr_A Propionyl-COA carboxyla 20.6 31 0.001 27.2 0.9 20 53-72 498-517 (548)
154 2gmy_A Hypothetical protein AT 20.3 23 0.00077 22.5 0.1 38 35-72 59-98 (153)
155 3uif_A Sulfonate ABC transport 20.3 1.1E+02 0.0038 21.2 3.8 25 28-53 239-263 (348)
156 2f9i_B Acetyl-coenzyme A carbo 20.2 99 0.0034 22.1 3.5 33 41-73 232-267 (285)
157 3hrs_A Metalloregulator SCAR; 20.1 1.7E+02 0.0059 19.3 4.6 43 17-59 65-108 (214)
No 1
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=99.94 E-value=1.8e-27 Score=169.66 Aligned_cols=72 Identities=33% Similarity=0.528 Sum_probs=70.6
Q ss_pred CCCCCCccC-CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 1 MIKQPIGRI-EGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 1 MIHqP~~~~-~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
|||||++++ .|+++|+++++++|+++++.+.++|+++||+|.++|.++|+||+||||+||++|||||+|+++
T Consensus 132 MIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~m~rd~~msa~EA~eyGlID~V~~~ 204 (205)
T 4gm2_A 132 CLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK 204 (205)
T ss_dssp EECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred EEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCcccCHHHHHHcCCccEeecC
Confidence 899999998 999999999999999999999999999999999999999999999999999999999999875
No 2
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=99.90 E-value=1.8e-24 Score=153.52 Aligned_cols=75 Identities=36% Similarity=0.673 Sum_probs=72.3
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
|||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+.+...
T Consensus 121 miHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~~~~d~~lta~EA~e~GliD~I~~~~~~ 195 (203)
T 3qwd_A 121 MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK 195 (203)
T ss_dssp ECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHHHTSCCCEEHHHHHHHTSCSEECCCCC-
T ss_pred EEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhcCceecHHHHHHcCCcCEecCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988753
No 3
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=99.90 E-value=2.8e-24 Score=152.38 Aligned_cols=74 Identities=39% Similarity=0.650 Sum_probs=71.8
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|||||++++.|+++|+++.+++++++++.+.++|+++||++.++|.++|+||+||||+||++|||||+|+.+..
T Consensus 124 miH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~~~~~~~lta~EA~e~GliD~I~~~~~ 197 (201)
T 3p2l_A 124 MIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKDTDRDNFMMADEAKAYGLIDHVIESRE 197 (201)
T ss_dssp EECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSCSEECCCSC
T ss_pred EEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhhcCeeecHHHHHHcCCccEecCCHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998754
No 4
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=99.84 E-value=4.2e-21 Score=141.93 Aligned_cols=75 Identities=45% Similarity=0.717 Sum_probs=72.0
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEKS 75 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~~ 75 (91)
|||||++++.|+++|+.+.+++++++++.+.++|+++||++.++|.++++||+||||+||++|||||+|+.+...
T Consensus 176 mihqP~~g~~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~~drd~~lta~EAle~GLID~I~~~~~~ 250 (277)
T 1tg6_A 176 MIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPPQ 250 (277)
T ss_dssp EECCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHSSCEEECHHHHHHHTSCSEECSSCC-
T ss_pred EEecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcccCHHHHHHCCCCCEecCcchh
Confidence 799999999999999999999999999999999999999999999999999999999999999999999987654
No 5
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=99.82 E-value=2.1e-20 Score=133.37 Aligned_cols=74 Identities=39% Similarity=0.555 Sum_probs=63.6
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|+|||+++..|++.|+...++++.++++.+.++|+++||++.++|.+++++++||||+||++|||||+|..+..
T Consensus 132 ~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~~~ 205 (215)
T 2f6i_A 132 MIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 205 (215)
T ss_dssp ESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCCSS
T ss_pred EEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999998754
No 6
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=99.82 E-value=1.3e-20 Score=131.76 Aligned_cols=73 Identities=48% Similarity=0.761 Sum_probs=70.5
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
|+|||+++..|+++|+...+++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|+.+.
T Consensus 120 ~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~~~GliD~i~~~~ 192 (193)
T 1yg6_A 120 MIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHR 192 (193)
T ss_dssp EECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCeEEcHHHHHHcCCCCEecCCC
Confidence 7899999889999999999999999999999999999999999999999999999999999999999998764
No 7
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=99.77 E-value=3.2e-19 Score=126.18 Aligned_cols=74 Identities=34% Similarity=0.680 Sum_probs=60.9
Q ss_pred CCCCCCccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|+|||+++..|++.|+...+++++++++.+.++|+++||++.++|.+++++++||||+||++|||||+|.....
T Consensus 121 gih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~ 194 (208)
T 2cby_A 121 LMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAH 194 (208)
T ss_dssp ECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC-
T ss_pred EEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987654
No 8
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=99.76 E-value=6.6e-19 Score=125.53 Aligned_cols=74 Identities=32% Similarity=0.592 Sum_probs=59.2
Q ss_pred CCCCCCccC--CcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 1 MIKQPIGRI--EGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 1 MIHqP~~~~--~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
|+|||++++ .|+++|+.+.+++++++++.+.++|++++|++.+++.+++++++||||+||++|||||+|..+.+
T Consensus 139 gih~p~~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~~~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 139 MIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHADAERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp ECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred EEecccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence 689999888 89999999999999999999999999999999999999999999999999999999999987654
No 9
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=99.26 E-value=1.9e-12 Score=93.14 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=53.5
Q ss_pred CCCCCCc--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 1 MIKQPIG--RIEGQATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 1 MIHqP~~--~~~G~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
|+|+|.. +..|+++++ ..+.+...+. ..+.|++++|++.+.+.+++++++||||+||++|||||+|+.+
T Consensus 104 g~~~p~~~~~~~G~~~~~--~~k~~~~~~~-~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~ 174 (230)
T 3viv_A 104 GACRPILGYSQNGSIIEA--PPAITNYFIA-YIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARD 174 (230)
T ss_dssp ECCCEEEEECTTSCEEEC--CHHHHHHHHH-HHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSS
T ss_pred EeccceecCCCCCCchHH--HHHHHHHHHH-HHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCC
Confidence 4688874 456764322 2334444444 4578999999999999999999999999999999999999764
No 10
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=98.75 E-value=1e-08 Score=81.60 Aligned_cols=56 Identities=14% Similarity=0.065 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-------CCcCCHHHHHHcCCcceeecC
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRR-------PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-------d~wmta~EA~eyGliD~I~~~ 72 (91)
....+.|+.+.+.+.+.+++++|++.++|.+++++ ++||||+||+++||||+|...
T Consensus 201 e~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~~~~~l~~~~~~ta~~A~~~GLvD~i~~~ 263 (593)
T 3bf0_A 201 EADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASS 263 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHHHHHHHHTTTTCHHHHHHHTTSSSEECCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhhhhhhhcCCccHHHHHHCCCCCCCCCH
Confidence 45556778888888899999999999999999998 999999999999999999753
No 11
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=97.92 E-value=3.4e-05 Score=54.89 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 13 ATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 13 a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
..+-......++.+.+.+.+.+++..|.+.+++..+++...| ++++|+++||||+|..
T Consensus 155 ~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~-~a~~A~~~GLVD~i~~ 212 (240)
T 3rst_A 155 KEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVY-DGRQAKKLNLVDELGF 212 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEE-EHHHHHHTTSSSEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcc-cHHHHHHcCCCcccCC
Confidence 445566667889999999999999999999999998887765 9999999999999964
No 12
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=97.40 E-value=0.00037 Score=55.37 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 12 QATDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 12 ~a~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
+..+.....+.++.....+.+.+++..|++.+.+..++...+| ||+||+++||||+|..
T Consensus 445 t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~-ta~eA~~~GLVD~v~~ 503 (593)
T 3bf0_A 445 PPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVW-TGQDAKANGLVDSLGD 503 (593)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEE-EHHHHHHHTSCSEECC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCc-CHHHHHHCCCCcCccC
Confidence 4455566667778888889999999999999999988887765 9999999999999964
No 13
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}
Probab=91.55 E-value=0.2 Score=34.92 Aligned_cols=32 Identities=25% Similarity=0.488 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..-.+++-....++|+||.++||||+|++.+.
T Consensus 154 ~~a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~ 185 (232)
T 3ot6_A 154 SAFNRSVINAEMFDPEGAMAAGFLDKVVSVEE 185 (232)
T ss_dssp HHHHHHHTSCCEECHHHHHHHTSCSEEECTTT
T ss_pred HHHHHHHHcCCccCHHHHHHCCCCCEecCHHH
Confidence 34556666778899999999999999987543
No 14
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=91.23 E-value=0.13 Score=36.41 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=24.2
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+++..
T Consensus 165 ~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 195 (258)
T 3lao_A 165 DAMRYILTGDEFDADEALRMRLLTEVVEPGE 195 (258)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEECTTC
T ss_pred HHHHHHHcCCCCCHHHHHHcCCCcEeeChhH
Confidence 3445555666799999999999999987644
No 15
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3
Probab=91.18 E-value=0.077 Score=37.32 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+++..
T Consensus 154 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 183 (253)
T 1uiy_A 154 AKDLLLTGRLVEAREAKALGLVNRIAPPGK 183 (253)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred HHHHHHhCCccCHHHHHHCCCcceecChhH
Confidence 344444567899999999999999987543
No 16
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*
Probab=90.50 E-value=0.1 Score=36.38 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=23.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|++++
T Consensus 156 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~ 184 (233)
T 3r6h_A 156 YQQAAGLAKTFFGETALAAGFIDEISLPE 184 (233)
T ss_dssp HHHHHHSCCEECHHHHHHHTSCSEECCGG
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEeeCHH
Confidence 44555566789999999999999998653
No 17
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3
Probab=90.06 E-value=0.19 Score=36.39 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+++..
T Consensus 180 A~el~ltg~~i~A~eA~~~GLV~~vv~~~~ 209 (291)
T 2fbm_A 180 ANEMLIAGRKLTAREACAKGLVSQVFLTGT 209 (291)
T ss_dssp HHHHHTSCCEEEHHHHHHTTSCSEEECSTT
T ss_pred HHHHHHcCCccCHHHHHHCCCcceecChhH
Confidence 444555667799999999999999987543
No 18
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Probab=90.06 E-value=0.2 Score=35.41 Aligned_cols=28 Identities=32% Similarity=0.539 Sum_probs=22.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||+++||||+|+..
T Consensus 160 a~~llltg~~~~a~eA~~~GLv~~vv~~ 187 (260)
T 1sg4_A 160 AERALQLGLLFPPAEALQVGIVDQVVPE 187 (260)
T ss_dssp HHHHHHHTCCBCHHHHHHHTSSSEEECG
T ss_pred HHHHHHcCCcCCHHHHHHcCCCCEecCH
Confidence 3445545567999999999999999864
No 19
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}
Probab=90.03 E-value=0.13 Score=36.67 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+...
T Consensus 168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 196 (273)
T 2uzf_A 168 AREIWYLCRQYNAQEALDMGLVNTVVPLE 196 (273)
T ss_dssp HHHHHHTCCCEEHHHHHHHTSSSEEECGG
T ss_pred HHHHHHhCCCCCHHHHHHcCCCccccCHH
Confidence 44555566789999999999999998654
No 20
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D
Probab=89.88 E-value=0.11 Score=37.06 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=23.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+++.
T Consensus 178 A~~llltG~~~~A~eA~~~GLv~~vv~~~ 206 (263)
T 2j5g_A 178 GRYFLFTQEKLTAQQAYELNVVHEVLPQS 206 (263)
T ss_dssp HHHHHHTTCCEEHHHHHHTTSCSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecChH
Confidence 34555556779999999999999998653
No 21
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A
Probab=89.71 E-value=0.14 Score=36.43 Aligned_cols=30 Identities=17% Similarity=0.255 Sum_probs=23.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+.+..
T Consensus 162 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~ 191 (262)
T 3r9q_A 162 AMDLILTGRPVHANEALDIGLVNRVVARGQ 191 (262)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred HHHHHHcCCcCCHHHHHHcCCccEecChhH
Confidence 344554556899999999999999987654
No 22
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=89.35 E-value=0.36 Score=34.17 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=24.9
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+.+..
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 192 (265)
T 3swx_A 162 NAMRWMLTADTFDAVEAHRIGIVQEIVPVGE 192 (265)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEESTTC
T ss_pred HHHHHHHcCCcCCHHHHHHcCCCCEecChhH
Confidence 3455666677899999999999999987644
No 23
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Probab=89.18 E-value=0.37 Score=34.49 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=23.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+...
T Consensus 182 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 210 (280)
T 2f6q_A 182 ATEMLIFGKKLTAGEACAQGLVTEVFPDS 210 (280)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTT
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceEECHH
Confidence 44556667779999999999999998654
No 24
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*
Probab=89.03 E-value=0.25 Score=34.94 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=22.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+...
T Consensus 158 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 186 (260)
T 1mj3_A 158 AMEMVLTGDRISAQDAKQAGLVSKIFPVE 186 (260)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTT
T ss_pred HHHHHHcCCcCCHHHHHHcCCccEEeChH
Confidence 34444455678999999999999998653
No 25
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}
Probab=88.98 E-value=0.28 Score=34.85 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=24.4
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+....
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 192 (265)
T 3qxi_A 162 IAMELALTGDNLSAERAHALGMVNVLAEPGA 192 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred HHHHHHHcCCCcCHHHHHHCCCccEeeChhH
Confidence 3455555567899999999999999987643
No 26
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=88.93 E-value=0.18 Score=36.01 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=23.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||+++||||+|+....
T Consensus 176 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 205 (278)
T 4f47_A 176 ACDLLLTGRHITAAEAKEMGLVGHVVPDGQ 205 (278)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECTTC
T ss_pred HHHHHHcCCcCCHHHHHHCCCceEeeChhH
Confidence 344444556789999999999999987654
No 27
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}
Probab=88.68 E-value=0.27 Score=34.77 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=22.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+...
T Consensus 163 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 191 (265)
T 2ppy_A 163 ALDMNITGETITPQEALEIGLVNRVFPQA 191 (265)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSSSEEECGG
T ss_pred HHHHHHhCCccCHHHHHHCCCcceecCHH
Confidence 33444445679999999999999998643
No 28
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}
Probab=88.29 E-value=0.3 Score=34.44 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+.+..
T Consensus 153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 182 (255)
T 3p5m_A 153 TSRMAMTAEKISAATAFEWGMISHITSADE 182 (255)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEECCTTC
T ss_pred HHHHHHcCCCcCHHHHHHCCCCCEeeCHHH
Confidence 344444556799999999999999987643
No 29
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*
Probab=88.29 E-value=0.3 Score=34.18 Aligned_cols=28 Identities=14% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|+++
T Consensus 154 a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 181 (250)
T 2a7k_A 154 MQEIIYQCQSLDAPRCVDYRLVNQVVES 181 (250)
T ss_dssp HHHHHHHCCCBCHHHHHHHTCCSEEECH
T ss_pred HHHHHHcCCcccHHHHHHcCCcceecCH
Confidence 3444445567999999999999999864
No 30
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}
Probab=88.15 E-value=0.34 Score=34.28 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=24.0
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+.+..
T Consensus 162 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 192 (265)
T 3rsi_A 162 KAMEMILTGEPLTAFEAYHFGLVGHVVPAGT 192 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEESTTC
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEecChhH
Confidence 3445555567799999999999999987644
No 31
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}
Probab=88.04 E-value=0.15 Score=36.64 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHhhcCCCcCCHHHHHHcCCcceee
Q 039249 43 EQIEADIRRPKYFSPSEAVEYGIMDKVL 70 (91)
Q Consensus 43 e~I~~~m~rd~wmta~EA~eyGliD~I~ 70 (91)
..-.+++-....++|+||.++||||+|+
T Consensus 181 ~~A~ellltG~~i~A~eA~~~GLv~~vv 208 (276)
T 3rrv_A 181 LLAKEYALTGTRISAQRAVELGLANHVA 208 (276)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCHHHHH
Confidence 3444555566789999999999999998
No 32
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A
Probab=87.98 E-value=0.14 Score=36.64 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+...
T Consensus 168 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~ 196 (272)
T 3qk8_A 168 AKYYLLTCETLSGEEAERIGLVSTCVDDD 196 (272)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEeeCHh
Confidence 34455456689999999999999998754
No 33
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}
Probab=87.91 E-value=0.32 Score=34.21 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+.+.
T Consensus 160 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 188 (256)
T 3qmj_A 160 AAWLLMSSEWIDAEEALRMGLVWRICSPE 188 (256)
T ss_dssp HHHHHHSCCCEEHHHHHHHTSSSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeCHh
Confidence 34455566778999999999999998653
No 34
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0
Probab=87.83 E-value=0.19 Score=35.56 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=21.1
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCccee
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I 69 (91)
.-.+++-....++|+||.++||||+|
T Consensus 167 ~A~~l~ltg~~~~a~eA~~~GLv~~v 192 (267)
T 3oc7_A 167 AAARYYLTGEKFDARRAEEIGLITMA 192 (267)
T ss_dssp HHHHHHHHCCCBCHHHHHHHTSSSEE
T ss_pred HHHHHHHcCCccCHHHHHHCCChhhh
Confidence 34455555668999999999999999
No 35
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}
Probab=87.77 E-value=0.31 Score=34.45 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..-.+++-....++|+||+++||||+|+....
T Consensus 152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 183 (256)
T 3trr_A 152 QVAMELALTGESFTAEDAAKYGFINRLVDDGQ 183 (256)
T ss_dssp HHHHHHHHHCCCEEHHHHGGGTCCSEEECTTC
T ss_pred HHHHHHHHhCCCcCHHHHHHCCCeeEecChHH
Confidence 34555665667899999999999999987644
No 36
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}
Probab=87.76 E-value=0.15 Score=36.75 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||+++||||+|+....
T Consensus 186 ~~llltG~~i~A~eA~~~GLV~~vv~~~~ 214 (290)
T 3sll_A 186 SDIMLTGRDVDADEAERIGLVSRKVASES 214 (290)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECGGG
T ss_pred HHHHHcCCCCCHHHHHHCCCccEEeChhH
Confidence 34444455799999999999999987543
No 37
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}
Probab=87.60 E-value=0.33 Score=34.18 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=23.8
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.-.+++-....++|+||.++||||+|+.+.
T Consensus 155 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 184 (254)
T 3isa_A 155 QALSILGSARAFDADEARRIGFVRDCAAQA 184 (254)
T ss_dssp HHHHHHTTTCEEEHHHHHHTTSSSEECCGG
T ss_pred HHHHHHHhCCCCcHHHHHHCCCccEEeChh
Confidence 344555566779999999999999998753
No 38
>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A
Probab=87.59 E-value=0.15 Score=36.57 Aligned_cols=29 Identities=10% Similarity=0.298 Sum_probs=22.3
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||+++||||+|+++..
T Consensus 177 ~~llltG~~i~A~eA~~~GLv~~vv~~~~ 205 (279)
T 3t3w_A 177 KEILFTGRAMTAEEVAQTGMVNRVVPRDR 205 (279)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred HHHHHcCCccCHHHHHHCCCCcEeeChHH
Confidence 34444455899999999999999987543
No 39
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}
Probab=87.59 E-value=0.27 Score=34.62 Aligned_cols=29 Identities=17% Similarity=0.083 Sum_probs=22.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+.+.
T Consensus 155 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 183 (257)
T 2ej5_A 155 ALELAVLGEKVTAEEAAALGLATKVIPLS 183 (257)
T ss_dssp HHHHHHHCCCEEHHHHHHHTCCSEEECGG
T ss_pred HHHHHHhCCccCHHHHHHcCCcceecChh
Confidence 34444456679999999999999998653
No 40
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}
Probab=87.53 E-value=0.17 Score=36.05 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=20.7
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
.+++-....++|+||.++||||+|++
T Consensus 161 ~~l~ltg~~i~A~eA~~~GLv~~vv~ 186 (266)
T 3fdu_A 161 AELLFTAKKFNAETALQAGLVNEIVE 186 (266)
T ss_dssp HHHHHHCCEECHHHHHHTTSCSEECS
T ss_pred HHHHHhCCCcCHHHHHHCCCHHHHHH
Confidence 44444455699999999999999986
No 41
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=87.38 E-value=0.17 Score=36.78 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.7
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||+++||||+|+....
T Consensus 190 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~ 220 (298)
T 3qre_A 190 VALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ 220 (298)
T ss_dssp HHHHHHHHCCEEEHHHHHHTTSCSEEECGGG
T ss_pred HHHHHHHcCCCCCHHHHHHcCCCeEecCHHH
Confidence 3445555556899999999999999986543
No 42
>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=87.35 E-value=0.36 Score=34.12 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=23.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++--...++|+||.++||||+|+.++.
T Consensus 156 A~~llltg~~i~a~eA~~~GLv~~vv~~~~ 185 (258)
T 4fzw_A 156 ASKMVLSGESITAQQAQQAGLVSDVFPSDL 185 (258)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECTTT
T ss_pred HHHHHHcCCcCcHHHHHHCCCeeEEeCchH
Confidence 345555567899999999999999987654
No 43
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3
Probab=87.27 E-value=0.29 Score=34.66 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=22.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+.+.
T Consensus 165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 193 (264)
T 1wz8_A 165 AKYHLLLNEPLTGEEAERLGLVALAVEDE 193 (264)
T ss_dssp HHHHHHHTCCEEHHHHHHHTSSSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCceeecChh
Confidence 34444455679999999999999998653
No 44
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Probab=87.26 E-value=0.47 Score=33.81 Aligned_cols=29 Identities=17% Similarity=0.060 Sum_probs=23.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+...
T Consensus 174 A~~llltg~~~~a~eA~~~GLv~~vv~~~ 202 (280)
T 1pjh_A 174 TYECLMFNKPFKYDIMCENGFISKNFNMP 202 (280)
T ss_dssp HHHHHHTTCCEEHHHHHHTTCCSEECCCC
T ss_pred HHHHHHhCCCCCHHHHHHCCCcceeeCCc
Confidence 34455566779999999999999998653
No 45
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Probab=87.20 E-value=0.39 Score=33.97 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|+++
T Consensus 169 A~~llltG~~~~A~eA~~~GLv~~vv~~ 196 (257)
T 1szo_A 169 GRYFLLTGQELDARTALDYGAVNEVLSE 196 (257)
T ss_dssp HHHHHHTTCEEEHHHHHHHTSCSEEECH
T ss_pred HHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence 4555556678999999999999999864
No 46
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Probab=87.18 E-value=0.32 Score=34.26 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|++.
T Consensus 156 a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 183 (258)
T 2pbp_A 156 ALEWLWTGARMSAKEAEQLGIVNRVVSP 183 (258)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECG
T ss_pred HHHHHHcCCccCHHHHHHcCCcceeeCh
Confidence 3444445567899999999999999864
No 47
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}
Probab=87.07 E-value=0.38 Score=34.43 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=24.2
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+.+..
T Consensus 166 ~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 196 (275)
T 3hin_A 166 RMADMMLTGRVYSAAEGVVHGFSQYLIENGS 196 (275)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEESSSC
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCCEEeChhH
Confidence 3445555567899999999999999987644
No 48
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}
Probab=87.05 E-value=0.36 Score=34.41 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=22.6
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||.++||||+|+....
T Consensus 176 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 204 (279)
T 3g64_A 176 TRLLMLGDTVRAPEAERIGLISELTEEGR 204 (279)
T ss_dssp HHHHHHCCCEEHHHHHHHTCCSEECCTTC
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEecCchH
Confidence 44444556799999999999999987543
No 49
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Probab=87.03 E-value=0.35 Score=34.40 Aligned_cols=30 Identities=20% Similarity=0.259 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||+++||||+|+.+..
T Consensus 166 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 195 (272)
T 1hzd_A 166 AKELIFSARVLDGKEAKAVGLISHVLEQNQ 195 (272)
T ss_dssp HHHHHHHTCEEEHHHHHHHTSCSEEECCCT
T ss_pred HHHHHHcCCcCCHHHHHHCCCcceecChhh
Confidence 344444556789999999999999987654
No 50
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A
Probab=86.99 E-value=0.41 Score=34.00 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=24.4
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.-.+++-....++|+||.++||||+|+....
T Consensus 161 ~A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~ 191 (267)
T 3r9t_A 161 VAMRLLLTGEPLSAAAARDWGLINEVVEAGS 191 (267)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSSSEEECTTC
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEcChhH
Confidence 3445555567899999999999999987654
No 51
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*
Probab=86.95 E-value=0.38 Score=33.93 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=22.5
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.-.+++-....++|+||+++||||+|+.+
T Consensus 156 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 184 (261)
T 1ef8_A 156 IVKELIFTASPITAQRALAVGILNHVVEV 184 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECH
T ss_pred HHHHHHHcCCccCHHHHHHCCCcccccCH
Confidence 34445545568999999999999999864
No 52
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}
Probab=86.90 E-value=0.17 Score=36.22 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=22.2
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||.++||||+|+....
T Consensus 171 ~~llltg~~i~A~eA~~~GLv~~vv~~~~ 199 (275)
T 4eml_A 171 REIWYLCRQYSAQEAERMGMVNTVVPVDR 199 (275)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred HHHHHhCCCcCHHHHHHcCCccEeeCHHH
Confidence 44444455699999999999999987543
No 53
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus HB8} PDB: 3hrx_A
Probab=86.76 E-value=0.32 Score=34.19 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+.+..
T Consensus 152 A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 181 (254)
T 3gow_A 152 AQELLLLSPRLSAEEALALGLVHRVVPAEK 181 (254)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred HHHHHHcCCccCHHHHHHcCCCCEecCHHH
Confidence 344555567899999999999999987543
No 54
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A
Probab=86.68 E-value=0.27 Score=35.73 Aligned_cols=30 Identities=13% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++--...++|+||+++||||+|+....
T Consensus 201 A~~llltG~~i~A~eA~~~GLv~~vv~~~~ 230 (305)
T 3m6n_A 201 AQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ 230 (305)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSCSEEECTTC
T ss_pred HHHHHHcCCCCCHHHHHHCCCCCEecChhH
Confidence 334444456899999999999999987644
No 55
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}
Probab=86.62 E-value=0.29 Score=34.68 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=22.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+++.
T Consensus 161 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 189 (263)
T 3moy_A 161 AMDLCLTGRSLTAEEAERVGLVSRIVPAA 189 (263)
T ss_dssp HHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCch
Confidence 34445456689999999999999998754
No 56
>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}
Probab=86.58 E-value=0.31 Score=34.19 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=22.3
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++=....++|+||.++||||+|+++..
T Consensus 153 ~~llltg~~i~A~eA~~~GLv~~vv~~~~ 181 (254)
T 3hrx_A 153 QELLLLSPRLSAEEALALGLVHRVVPAEK 181 (254)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred HHHhhcCcccCHHHHHHCCCeEEecCcHH
Confidence 33444455689999999999999987654
No 57
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A
Probab=86.44 E-value=0.31 Score=34.12 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=21.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|+++
T Consensus 151 a~~l~ltg~~~~a~eA~~~GLv~~vv~~ 178 (243)
T 2q35_A 151 AQEMIYTGENYRGKELAERGIPFPVVSR 178 (243)
T ss_dssp HHHHHHHCCCEEHHHHHHTTCSSCEECH
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEecCh
Confidence 3444444567999999999999999864
No 58
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A
Probab=86.44 E-value=0.37 Score=33.99 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=21.5
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-....++|+||.++||||+|+.+.
T Consensus 163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 190 (261)
T 2gtr_A 163 NEMLLSGRKLTAQEACGKGLVSQVFWPG 190 (261)
T ss_dssp HHHHHHCCCEEHHHHHHTTSCSEEECGG
T ss_pred HHHHHcCCCCCHHHHHHCCCcccccChh
Confidence 3444445569999999999999998643
No 59
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=86.34 E-value=0.32 Score=34.47 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=22.4
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|++..
T Consensus 153 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 181 (256)
T 3pe8_A 153 ARRMSLTGDYLSAQDALRAGLVTEVVAHD 181 (256)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSCEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCCeEEeCHh
Confidence 34444445569999999999999998754
No 60
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=86.30 E-value=0.33 Score=34.41 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=22.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+.+.
T Consensus 163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 191 (265)
T 3kqf_A 163 AKELIYTGRRISAQEAKEYGLVEFVVPVH 191 (265)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeCHH
Confidence 33444456679999999999999998754
No 61
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0
Probab=86.23 E-value=0.43 Score=33.78 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=20.7
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
+++-....++|+||.++||||+|++.
T Consensus 161 ~l~ltg~~~~A~eA~~~GLv~~vv~~ 186 (265)
T 3qxz_A 161 ELLLTGASFSAQRAVETGLANRCLPA 186 (265)
T ss_dssp HHHHHCCCBCHHHHHHHTSCSEEECH
T ss_pred HHHHcCCCcCHHHHHHCCCccEeeCH
Confidence 34434457899999999999999865
No 62
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0
Probab=86.20 E-value=0.23 Score=35.29 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=18.2
Q ss_pred cCCHHHHHHcCCcceeecCC
Q 039249 54 YFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 54 wmta~EA~eyGliD~I~~~~ 73 (91)
.++|+||.++||||+|+...
T Consensus 181 ~~~A~eA~~~GLv~~vv~~~ 200 (274)
T 3tlf_A 181 RMSAQRAYELGLISEIVEHD 200 (274)
T ss_dssp CEEHHHHHHHTSSSEEECGG
T ss_pred ccCHHHHHHCCCCCeecCHH
Confidence 89999999999999998754
No 63
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A
Probab=86.00 E-value=0.23 Score=36.52 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 43 EQIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 43 e~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
..-.+++--..-++|+||+++||||+|+...
T Consensus 213 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~ 243 (333)
T 3njd_A 213 QRAKRLLFTGDCITGAQAAEWGLAVEAPDPA 243 (333)
T ss_dssp HHHHHHHTTCCEEEHHHHHHTTSSSBCCCGG
T ss_pred HHHHHHHhcCCCCCHHHHHHCCCccEecChH
Confidence 3445566666779999999999999998653
No 64
>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}
Probab=86.00 E-value=0.38 Score=34.32 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=23.2
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||.++||||+|+++..
T Consensus 172 A~~llltg~~i~A~eA~~~GLv~~vv~~~~ 201 (274)
T 4fzw_C 172 AMGLALLGNQLSAEQAHEWGMIWQVVDDET 201 (274)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSSSEEECGGG
T ss_pred HHHHHHhCCcCCHHHHHHCCCceEEeChHH
Confidence 344444556799999999999999987543
No 65
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}
Probab=85.75 E-value=0.4 Score=34.49 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=23.2
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.-.+++-....++|+||+++||||+|+.+.
T Consensus 185 ~A~~llltg~~i~A~eA~~~GLv~~vv~~~ 214 (287)
T 2vx2_A 185 VALEMLFTGEPISAQEALLHGLLSKVVPEA 214 (287)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred HHHHHHHhCCCCCHHHHHHCCCcceecCHH
Confidence 344455556679999999999999998653
No 66
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A
Probab=85.70 E-value=0.28 Score=34.78 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=22.5
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.-.+++-....++|+||.++||||+|+.+
T Consensus 168 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 196 (275)
T 1dci_A 168 LVNELTFTARKMMADEALDSGLVSRVFPD 196 (275)
T ss_dssp HHHHHHHHCCEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHHHcCCCCCHHHHHHcCCcceecCC
Confidence 33444445567999999999999999865
No 67
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=85.66 E-value=0.4 Score=33.92 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=22.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+...
T Consensus 159 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~ 187 (261)
T 3pea_A 159 ACEMMLTSTPITGAEALKWGLVNGVFAEE 187 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCHH
Confidence 34444445679999999999999998753
No 68
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=85.62 E-value=0.36 Score=34.64 Aligned_cols=29 Identities=17% Similarity=0.452 Sum_probs=22.9
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||+++||||+|+...
T Consensus 176 A~~llltG~~i~A~eA~~~GLV~~vv~~~ 204 (277)
T 4di1_A 176 AKELVFSGRFFDAEEALALGLIDDMVAPD 204 (277)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeChh
Confidence 34455556789999999999999998754
No 69
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}
Probab=85.51 E-value=0.42 Score=34.37 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=23.1
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.-.+++-....++|+||.++||||+|+...
T Consensus 178 ~A~~llltG~~i~A~eA~~~GLv~~vv~~~ 207 (286)
T 3myb_A 178 AAFEMLVTGEFVSADDAKGLGLVNRVVAPK 207 (286)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGG
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCHH
Confidence 344555445669999999999999998754
No 70
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0
Probab=85.38 E-value=0.4 Score=34.12 Aligned_cols=29 Identities=7% Similarity=0.164 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-...-++|+||.++||||+|++..
T Consensus 159 A~~llltg~~i~A~eA~~~GLV~~vv~~~ 187 (268)
T 3i47_A 159 AKMLFMSAEVFDATRAYSLNLVQHCVPDD 187 (268)
T ss_dssp HHHHHHHCCEEEHHHHHHTTSCSEEECGG
T ss_pred HHHHHHcCCccCHHHHHHcCCCcEeeChh
Confidence 34455556789999999999999998764
No 71
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*
Probab=85.36 E-value=0.38 Score=34.50 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-.+++-....++|+||+++||||+|+....
T Consensus 176 A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~ 205 (278)
T 3h81_A 176 AMDLILTGRTMDAAEAERSGLVSRVVPADD 205 (278)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGG
T ss_pred HHHHHHhCCCcCHHHHHHCCCccEEeChhH
Confidence 344544556799999999999999987543
No 72
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}
Probab=85.32 E-value=0.58 Score=33.28 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=21.7
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|+++
T Consensus 160 A~ellltg~~i~A~eA~~~GLV~~vv~~ 187 (267)
T 3hp0_A 160 AHYMTLMTKPISVQEASEWGLIDAFDAE 187 (267)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSSSCBCSC
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceecCC
Confidence 3444444568999999999999999853
No 73
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*
Probab=85.10 E-value=0.48 Score=33.50 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=20.7
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
+++-....++|+||.++||||+|+.+
T Consensus 163 ~l~ltg~~~~a~eA~~~GLv~~vv~~ 188 (269)
T 1nzy_A 163 ELMLTNRTLYPEEAKDWGLVSRVYPK 188 (269)
T ss_dssp HHHHHCCCBCHHHHHHHTSCSCEECH
T ss_pred HHHHcCCCCCHHHHHHCCCccEeeCH
Confidence 33434566999999999999999864
No 74
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=84.56 E-value=4.7 Score=28.06 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHhhCCCHHHHHHhhc-CCCc----CCH----------HHHHHcCCcceeec
Q 039249 22 EIKNVKAELVKLYAKHFGKTPEQIEADIR-RPKY----FSP----------SEAVEYGIMDKVLY 71 (91)
Q Consensus 22 ~l~~~~~~i~~iYa~~TG~~~e~I~~~m~-rd~w----mta----------~EA~eyGliD~I~~ 71 (91)
.+....+...+++++.+|.+.+.+...++ +-.| +++ +-..+.|++++-+.
T Consensus 241 ~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gli~~~~~ 305 (324)
T 3ksx_A 241 LLERDRAGSIKTLAQVSGLPPAVVERTLAHRPPASVQPLSAQVIKAQQATADLFYAQRLLPKRVL 305 (324)
T ss_dssp HHHHTHHHHHHHHHHHHCCCHHHHHHHHHTCCCCCCBCCCHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHCHHHHHHHHHHHHCcCHHHHHHHHhhcCcCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCc
Confidence 33444556778889999999999999988 5444 444 34578899886544
No 75
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*
Probab=84.35 E-value=0.51 Score=33.63 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=22.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
-.+++-....++|+||.++||||+|++.
T Consensus 167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~ 194 (276)
T 2j5i_A 167 SLMYIMTGKTFGGQKAAEMGLVNESVPL 194 (276)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEEECH
T ss_pred HHHHHHhCCcccHHHHHHcCCccEeeCH
Confidence 3444545667999999999999999864
No 76
>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}
Probab=84.23 E-value=0.55 Score=33.21 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=21.8
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
-.+++-....++|+||.++||||+|+.
T Consensus 162 A~~l~ltg~~~~a~eA~~~GLv~~vv~ 188 (263)
T 3lke_A 162 TMNLLLEGKLFTSEEALRLGLIQEICE 188 (263)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEES
T ss_pred HHHHHHhCCCcCHHHHHHcCCCcEecC
Confidence 344544556899999999999999987
No 77
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}
Probab=84.18 E-value=0.49 Score=33.46 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.-.+++-....++|+||+++||||+|+++
T Consensus 163 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~ 191 (263)
T 3l3s_A 163 AVTEMALTGATYDADWALAAGLINRILPE 191 (263)
T ss_dssp HHHHHHHHCCEEEHHHHHHHTSSSEECCH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeCH
Confidence 34455555567999999999999999864
No 78
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A
Probab=83.99 E-value=0.52 Score=33.99 Aligned_cols=29 Identities=10% Similarity=0.189 Sum_probs=21.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.+++-....++|+||.++||||+|+....
T Consensus 185 ~~llltG~~i~A~eA~~~GLV~~vv~~~~ 213 (289)
T 3t89_A 185 REIWFLCRQYDAKQALDMGLVNTVVPLAD 213 (289)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECGGG
T ss_pred HHHHHcCCcccHHHHHHCCCceEeeCHHH
Confidence 33443445699999999999999987543
No 79
>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}
Probab=82.96 E-value=0.46 Score=35.27 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.2
Q ss_pred CCCcCCHHHHHHcCCcceeecCCC
Q 039249 51 RPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
-...++|+||+++||||+|+.++.
T Consensus 171 tG~~i~A~eA~~~GLv~~vv~~~~ 194 (353)
T 4hdt_A 171 TGAPFSGADAIVMGFADHYVPHDK 194 (353)
T ss_dssp HCCCBCHHHHHHHTSCSEECCGGG
T ss_pred cCCCCCHHHHHHcCCCcEEeCHHH
Confidence 345789999999999999987654
No 80
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}
Probab=82.44 E-value=0.61 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-....++|+||.++||||+|+.+.
T Consensus 169 ~ellltG~~i~A~eA~~~GLV~~vv~~~ 196 (287)
T 3gkb_A 169 LEVVLTADLFDAETAASYGWINRALPAD 196 (287)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEECHH
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEEeChh
Confidence 4444445679999999999999998653
No 81
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}
Probab=82.35 E-value=0.61 Score=33.59 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
-.+++-....++|+||.++||||+|+++.
T Consensus 165 A~ellltG~~i~A~eA~~~GLV~~vv~~~ 193 (289)
T 3h0u_A 165 ALEAVLTSSDFDADLAERYGWVNRAVPDA 193 (289)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEecCHH
Confidence 34444445569999999999999998653
No 82
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A
Probab=81.12 E-value=0.6 Score=34.53 Aligned_cols=28 Identities=7% Similarity=0.100 Sum_probs=21.5
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
+++-.-..++|+||.++||||+|+....
T Consensus 231 ellltG~~i~A~eA~~~GLV~~vv~~~~ 258 (334)
T 3t8b_A 231 EIFFLGRTYTAEQMHQMGAVNAVAEHAE 258 (334)
T ss_dssp HHHHHCCEEEHHHHHHHTSCSEEECGGG
T ss_pred HHHHhCCcCCHHHHHHCCCCcEecCHHH
Confidence 3433445689999999999999987543
No 83
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}
Probab=80.93 E-value=0.82 Score=32.59 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=21.5
Q ss_pred HHHhhcCCCcCCHHHHHHcCCcceeec
Q 039249 45 IEADIRRPKYFSPSEAVEYGIMDKVLY 71 (91)
Q Consensus 45 I~~~m~rd~wmta~EA~eyGliD~I~~ 71 (91)
-.+++-....++|+||.++||||+|..
T Consensus 168 A~~llltG~~i~A~eA~~~GLV~~v~~ 194 (264)
T 3he2_A 168 ARAMLLSAEKLTAEIALHTGMANRIGT 194 (264)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEECC
T ss_pred HHHHHHcCCCccHHHHHHCCCeEEEec
Confidence 344555567899999999999999964
No 84
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}
Probab=79.55 E-value=0.71 Score=35.01 Aligned_cols=28 Identities=14% Similarity=0.080 Sum_probs=22.1
Q ss_pred HhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 47 ADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 47 ~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
.++=...-++|+||+++||||+|+.+..
T Consensus 204 ~l~ltG~~i~A~eA~~~GLv~~vv~~~~ 231 (407)
T 3ju1_A 204 FLGLTAYHMNAADACYVGLADHYLNRDD 231 (407)
T ss_dssp HHHHHCCCBCHHHHHHHTSCSEECCGGG
T ss_pred HHHHcCCcCcHHHHHHCCCccEEcCHHH
Confidence 3444456799999999999999987644
No 85
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=79.55 E-value=1 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=18.7
Q ss_pred CcCCHHHHHHcCCcceeecCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~ 73 (91)
.++||++|++.||||+|+..+
T Consensus 257 ~~itA~~a~~~GlVd~VV~ep 277 (327)
T 2f9i_A 257 MKITAHDIKQLGIIDDVISEP 277 (327)
T ss_dssp HTCBHHHHHHTTSSSEEECCC
T ss_pred cCCCHHHHHHcCCceEEecCC
Confidence 679999999999999999743
No 86
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=77.92 E-value=0.91 Score=33.86 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=18.7
Q ss_pred CcCCHHHHHHcCCcceeecCC
Q 039249 53 KYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~~ 73 (91)
.++||++|+++||||+|+..+
T Consensus 271 ~~itA~~a~~~GlVd~VV~ep 291 (339)
T 2f9y_A 271 MGIIRPRLKELKLIDSIIPEP 291 (339)
T ss_dssp HTCSHHHHHTTTSCSCCCCCS
T ss_pred cCCCHHHHHHcCCeeEEecCC
Confidence 679999999999999998743
No 87
>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}
Probab=77.86 E-value=0.64 Score=34.54 Aligned_cols=29 Identities=14% Similarity=-0.007 Sum_probs=22.5
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTEK 74 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~~ 74 (91)
..++=....++|+||.++||||+|+.+..
T Consensus 163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~ 191 (363)
T 3bpt_A 163 YFLALTGFRLKGRDVYRAGIATHFVDSEK 191 (363)
T ss_dssp HHHHHHCCCEETHHHHHTTSCSEECCGGG
T ss_pred HHHHHcCCCCCHHHHHHCCCcceecCHHH
Confidence 33444567799999999999999986543
No 88
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=77.74 E-value=5.6 Score=28.37 Aligned_cols=55 Identities=16% Similarity=0.119 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHH-----------HHHcCCcceeec
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSE-----------AVEYGIMDKVLY 71 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~E-----------A~eyGliD~I~~ 71 (91)
+++..+......+.+.+++++++|.+.+.+...+.+-+|--.++ + +.||+..-++
T Consensus 223 l~~a~~~~~~~~~e~~~~~a~~~gl~~~~i~~yl~~~~~~l~~~~~~~l~~~~~~~-~~glip~~~d 288 (301)
T 2i6e_A 223 MREARRRGIGHLAEVSQRHAEKLGLPERVVQHYLWNFRYHLEAPDRLGLREFADLA-VPGHAELTFG 288 (301)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTTTCCHHHHHHHHHTCBCSCCHHHHHHHHHHHHHH-STTCCCCCC-
T ss_pred HHHHHHHHHHCHHHHHHHHHHHcCCCHHHHHHHHHhCeeCCCHHHHHHHHHHHHHH-hcCCCCCCCC
Confidence 33334445555667899999999999999999987766654444 4 5677765544
No 89
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=72.79 E-value=0.88 Score=37.18 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=22.6
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-....++|+||+++||||+|++.+
T Consensus 168 ~~l~ltG~~i~a~eA~~~GLv~~vv~~d 195 (742)
T 3zwc_A 168 LDLITSGKYLSADEALRLGILDAVVKSD 195 (742)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEESSC
T ss_pred HHHHHcCCchhHHHHHHcCCccEecCch
Confidence 4455556788999999999999998653
No 90
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}
Probab=72.06 E-value=2.7 Score=33.58 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=22.8
Q ss_pred HHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 44 QIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 44 ~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.-..++-....++|+||+++||||+|+.+
T Consensus 194 rA~eLlLTGr~isA~EAl~lGLVdeVVp~ 222 (556)
T 2w3p_A 194 RADIFCTVVEGVRGERAKAWRLVDEVVKP 222 (556)
T ss_dssp HHHHHTTCSSCEEHHHHHHTTSCSEEECH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence 34445556677999999999999999853
No 91
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Probab=70.96 E-value=2 Score=34.68 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=21.8
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+++-....++|+||+++||||+|+.+
T Consensus 165 ~~l~ltG~~~~a~eA~~~GLv~~vv~~ 191 (715)
T 1wdk_A 165 VEWIASGKENRAEDALKVSAVDAVVTA 191 (715)
T ss_dssp HHHHHHCCCEEHHHHHHTTSSSEEECG
T ss_pred HHHHHcCCCCCHHHHHHCCCceEEeCh
Confidence 344445668999999999999999864
No 92
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}
Probab=69.83 E-value=2.4 Score=34.28 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecCC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~~ 73 (91)
.+++-....++|+||+++||||+|+.+.
T Consensus 164 ~~l~ltG~~~~a~eA~~~GLv~~vv~~~ 191 (725)
T 2wtb_A 164 LEMILTSKPVKAEEGHSLGLIDAVVPPA 191 (725)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEECCTT
T ss_pred HHHHHcCCCCCHHHHHHCCccceEcChh
Confidence 3444445689999999999999998643
No 93
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=64.03 E-value=7.8 Score=26.89 Aligned_cols=47 Identities=2% Similarity=-0.100 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcC-CHH----------HHHHcCCcceee
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEADIRRPKYF-SPS----------EAVEYGIMDKVL 70 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wm-ta~----------EA~eyGliD~I~ 70 (91)
....+...+++++.+|.+.+.+...+.+-+|- +++ .+.+.|++++..
T Consensus 219 ~~~p~ea~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gli~~~~ 276 (291)
T 2nxo_A 219 LEEVEKVAEQAARWEAFDEDTLAKYFTTLDFRFGAPQLEAVTEFARRVGPTTGFPADV 276 (291)
T ss_dssp HHTHHHHHHHHHTTSSSCHHHHHHHHHHSBCCCSHHHHHHHHHHHHHHSTTTTSCTTC
T ss_pred HHCHHHHHHHHHHHcCCCHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 33445677889999999999999888654443 332 134567776543
No 94
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*
Probab=61.99 E-value=1.5 Score=33.82 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=21.3
Q ss_pred HHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 46 EADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 46 ~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
.+++-....++|+||.++||||+|+..
T Consensus 345 ~ellLtG~~i~A~EA~~~GLV~~Vvp~ 371 (440)
T 2np9_A 345 RQVILEGRRIWAKEPEARLLVDEVVEP 371 (440)
T ss_dssp HHHHHHCCCEETTSGGGGGTCSEEECH
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCh
Confidence 344444567999999999999999864
No 95
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=57.39 E-value=38 Score=22.26 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHh-hCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 12 QATDVEIARKEIK--NVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 12 ~a~dl~~~a~~l~--~~~~~i~~iYa~~-TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|...|+.|+ .+-+..++..|.. .|+|+++|++.++=..=||++|=-
T Consensus 105 ~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 105 MLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 3446666666553 3444555555543 499999999998866668998753
No 96
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=56.15 E-value=28 Score=20.35 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHH---------HHhhcCCCc-CCHHH-HHHcCCcce
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQI---------EADIRRPKY-FSPSE-AVEYGIMDK 68 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I---------~~~m~rd~w-mta~E-A~eyGliD~ 68 (91)
+...|+.+.-....+.+.+.+.+|.++.+. ..++....+ ++-.| |.+.||-|.
T Consensus 21 ~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~~si~~IA~~~Gf~~~ 84 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSDGATPTTVTAAALSCGFSNL 84 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHTTCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCCH
Confidence 455666777778889999999999987554 335555555 66655 677888773
No 97
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=45.77 E-value=64 Score=21.70 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCC-c----CCH----------HHHHHcCCcceee
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPK-Y----FSP----------SEAVEYGIMDKVL 70 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~-w----mta----------~EA~eyGliD~I~ 70 (91)
+...+++++.+|.+.+.+...+.+-. | ++. +-..+.|++++-+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~ 278 (308)
T 2x26_A 221 EQSIALLAKTMGLPAPVIASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKV 278 (308)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHTCCCCCCBCCCHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHHhCcCHHHHHHHHhccCccCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Confidence 45778888999999999999887655 4 232 2346888887543
No 98
>3lvy_A Carboxymuconolactone decarboxylase family; alpha-structure, structural genomics, PSI-2, protein structure initiative; 2.10A {Streptococcus mutans}
Probab=44.00 E-value=17 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=37.2
Q ss_pred HhhCCCHHHHHHhhcCCCc-CCHHHHHHcCCcceeecCCCCCCCchhHhHhHh
Q 039249 36 KHFGKTPEQIEADIRRPKY-FSPSEAVEYGIMDKVLYTEKSPEDHGVVSDLKK 87 (91)
Q Consensus 36 ~~TG~~~e~I~~~m~rd~w-mta~EA~eyGliD~I~~~~~~~~~~~~~~~~~~ 87 (91)
++.|.+.++|.++-+.+.+ +++.|..-+.|++.+...... -..+....|..
T Consensus 113 ~~~G~~~e~i~a~r~~~~~~~~~~erA~l~~a~~lt~~~~~-v~d~~~~~l~~ 164 (207)
T 3lvy_A 113 KQIQMAPDLLEALRNATPIDDDPKLDTLAKFTIAVINTKGR-VGDEAFADFLE 164 (207)
T ss_dssp HTTCCCHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHTTTC-CCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Confidence 3789999999888776667 899999999999998774332 23344444544
No 99
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=43.28 E-value=46 Score=20.46 Aligned_cols=29 Identities=14% Similarity=0.118 Sum_probs=23.7
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 039249 8 RIEGQATDVEIARKEIKNVKAELVKLYAK 36 (91)
Q Consensus 8 ~~~G~a~dl~~~a~~l~~~~~~i~~iYa~ 36 (91)
.+.|++++++.-+.+|.+.++.+.+....
T Consensus 3 qa~~dpeElr~Fa~~L~~F~d~Lq~~~~~ 31 (94)
T 3fx7_A 3 RVQMDTEEVREFVGHLERFKELLREEVNS 31 (94)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999888776654
No 100
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=42.98 E-value=56 Score=21.08 Aligned_cols=50 Identities=26% Similarity=0.338 Sum_probs=31.0
Q ss_pred cCHHHHHHHHHHH--HHHHHHHHHHHHHh-hCCCHHHHHHhhcCCCcCCHHHH
Q 039249 11 GQATDVEIARKEI--KNVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEA 60 (91)
Q Consensus 11 G~a~dl~~~a~~l--~~~~~~i~~iYa~~-TG~~~e~I~~~m~rd~wmta~EA 60 (91)
++.-+|...|+.| ..+-+.-++..|.. .|+++++|++.++=..=||++|=
T Consensus 96 ~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe 148 (160)
T 2p1m_A 96 ATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEE 148 (160)
T ss_dssp -----CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHH
Confidence 3455566666655 34445555666654 48999999999876556898873
No 101
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=40.14 E-value=71 Score=20.40 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHH--HHHHHHHHHHHHh-hCCCHHHHHHhhcCCCcCCHHH
Q 039249 11 GQATDVEIARKEIK--NVKAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSE 59 (91)
Q Consensus 11 G~a~dl~~~a~~l~--~~~~~i~~iYa~~-TG~~~e~I~~~m~rd~wmta~E 59 (91)
++.-+|...|+.|+ .+.+.-++..+.. .|+++++|++.++=..=||++|
T Consensus 97 ~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eE 148 (159)
T 2ast_A 97 GTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEE 148 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHH
Confidence 45677778887763 4555556666653 5899999999988666688775
No 102
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=40.06 E-value=33 Score=19.92 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++ ..+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~-~~~~~i~~~L~~g 39 (90)
T 1b8z_A 3 KKELIDRVAKKAGAKKKDVKLILD-TILETITEALAKG 39 (90)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHH-HHHHHHHHHHhCC
Confidence 456788899999999998888774 2333345566655
No 103
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=38.88 E-value=20 Score=20.00 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=14.1
Q ss_pred HHhhCCCHHHHHHhhc
Q 039249 35 AKHFGKTPEQIEADIR 50 (91)
Q Consensus 35 a~~TG~~~e~I~~~m~ 50 (91)
|+++|.|.++|++.+.
T Consensus 22 Ak~lGlsleEIrefL~ 37 (57)
T 1b0n_B 22 AKEANISPEEIRKYLL 37 (57)
T ss_dssp HHHTTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5789999999999875
No 104
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=37.93 E-value=37 Score=19.73 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~-~~~~i~~~L~~g 39 (90)
T 1mul_A 3 KTQLIDVIAEKAELSKTQAKAALES-TLAAITESLKEG 39 (90)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 3567888999999999888887652 233345555555
No 105
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=37.07 E-value=38 Score=19.86 Aligned_cols=37 Identities=32% Similarity=0.270 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~~-~~~~i~~~L~~g 39 (94)
T 1p71_A 3 KGELVDAVAEKASVTKKQADAVLTA-ALETIIEAVSSG 39 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 4567888999999999888877652 233344555555
No 106
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=36.71 E-value=13 Score=26.97 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.3
Q ss_pred CCcCCHHHHHHcCCcceeecC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~ 72 (91)
+-+.+|+++.+.|+||.|+..
T Consensus 243 ~~~~~Ae~~~~~Glvd~Vv~~ 263 (304)
T 2f9y_B 243 PGFQRSEFLIEKGAIDMIVRR 263 (304)
T ss_dssp TTTTBHHHHGGGTCCSEECCH
T ss_pred cccCCHHHHHhcCCccEEeCc
Confidence 457799999999999999864
No 107
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=35.47 E-value=53 Score=19.26 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCHHH-HHHcCCcc
Q 039249 15 DVEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSPSE-AVEYGIMD 67 (91)
Q Consensus 15 dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta~E-A~eyGliD 67 (91)
.+...|+.+.-....+.+.+.+.+|.++.+... ++.. +-++-.| |.+.||-|
T Consensus 25 ~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~-~~~~i~eIA~~~Gf~~ 86 (113)
T 3oio_A 25 STDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQ-TSKSIVQIGLACGFSS 86 (113)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHTTCSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHCCCC
Confidence 355667777777888999999999988765432 3332 3345444 77888876
No 108
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=35.31 E-value=37 Score=19.75 Aligned_cols=37 Identities=16% Similarity=0.151 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++ ..+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~ls~~~~~~~l~-~~~~~i~~~L~~g 39 (90)
T 2o97_B 3 KSQLIDKIAAGADISKAAAGRALD-AIIASVTESLKEG 39 (90)
T ss_dssp HHHHHHHHHHTTC-CHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHHCC
Confidence 456788899999999988887765 2333345566655
No 109
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=35.09 E-value=56 Score=19.01 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCH-HHHHHcCCcc
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSP-SEAVEYGIMD 67 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta-~EA~eyGliD 67 (91)
+...|+.+.-....+.+.+.+.+|.|+.+... ++.. +=++- +=|.+.||-|
T Consensus 24 ~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~-~~~si~~IA~~~Gf~~ 84 (108)
T 3oou_A 24 LKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQ-TKDNLTIIAGKSGYTD 84 (108)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHTTCCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc-CCCCHHHHHHHcCCCC
Confidence 45566667777788889999999988765322 3322 22343 4467777766
No 110
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=34.31 E-value=57 Score=17.58 Aligned_cols=31 Identities=13% Similarity=0.018 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.+...
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~~p~~~~l~ 48 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSETAPVVVKYI 48 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCSCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 4568899999999999988777666666543
No 111
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=34.13 E-value=29 Score=20.49 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 6 k~eLi~~ia~~~~lsk~~~~~~v~~-~~~~i~~~L~~g 42 (93)
T 3rhi_A 6 KTELIKNVAQNAEISQKEATVVVQT-VVESITNTLAAG 42 (93)
T ss_dssp -CHHHHHHHHHHTCCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 3468888999999999888877652 222344555555
No 112
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensat binding; 2.04A {Mycobacterium tuberculosis}
Probab=34.07 E-value=45 Score=19.81 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++ ..+=.-.+++..|
T Consensus 3 k~eLi~~ia~~~~lsk~~~~~~l~-~~~~~i~~~L~~g 39 (99)
T 3c4i_A 3 KAELIDVLTQKLGSDRRQATAAVE-NVVDTIVRAVHKG 39 (99)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH-HHHHHHHHHHhCC
Confidence 456788899999999988887765 2333345555555
No 113
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=34.04 E-value=60 Score=17.74 Aligned_cols=32 Identities=16% Similarity=0.068 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 30 LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 30 i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
-..-+|+++|.+...|..+.....-.+.+...
T Consensus 27 sq~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 58 (88)
T 2wiu_B 27 TQSELAKKIGIKQATISNFENNPDNTTLTTFF 58 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 34568999999999999998877777777654
No 114
>2o4d_A Hypothetical protein PA0269; unknown function; 1.85A {Pseudomonas aeruginosa} SCOP: a.152.1.3 PDB: 2ijc_A
Probab=33.88 E-value=23 Score=22.96 Aligned_cols=38 Identities=21% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHhhCCCHHHHHHhhc-C-CCcCCHHHHHHcCCcceeecC
Q 039249 35 AKHFGKTPEQIEADIR-R-PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 35 a~~TG~~~e~I~~~m~-r-d~wmta~EA~eyGliD~I~~~ 72 (91)
+.+.|.+.++|.+... + ...+++.|..-+.|++.+...
T Consensus 79 a~~~G~s~e~i~~l~~~~~~~~~~~~erA~l~~a~~lt~~ 118 (165)
T 2o4d_A 79 ARKAGETEQRLQALCVWQETPYFTPRERAALAWTEQLARL 118 (165)
T ss_dssp HHHTTCCHHHHHHGGGGGGCSCSCHHHHHHHHHHHHHHTG
T ss_pred HHHcCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhC
Confidence 4566999999988764 2 247899999999999999864
No 115
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=33.72 E-value=1.1e+02 Score=21.00 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCC
Q 039249 24 KNVKAELVKLYAKHFGKTPEQIEADIRRPKYFS 56 (91)
Q Consensus 24 ~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmt 56 (91)
....+...+++++.+|.+.+.+...+.+..|.+
T Consensus 234 ~~~p~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (321)
T 2x7q_A 234 NEHVDEAIEYISSNLDYSAEDAKEWTKTVEFNS 266 (321)
T ss_dssp HHCHHHHHHHHHHHSSCCHHHHHHHHTTCCBCT
T ss_pred HHCHHHHHHHHHHHhCcCHHHHHHHHhcCcccc
Confidence 333445667888889999999999988766654
No 116
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ihf_A 1ouz_A 1owg_A 2ht0_A
Probab=33.12 E-value=49 Score=19.63 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.+++++|.+..++...++. .+=.-.+++..|
T Consensus 5 k~eli~~ia~~~~ls~~~~~~vl~~-~~~~i~~~L~~G 41 (99)
T 1owf_A 5 KAEMSEYLFDKLGLSKRDAKELVEL-FFEEIRRALENG 41 (99)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 4568888999999999988887752 223344555555
No 117
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.65 E-value=59 Score=17.25 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCC-cCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPK-YFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~-wmta~EA~ 61 (91)
..-+|+++|.+...|..+....+ -.+.+...
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~ 54 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRSKRPTITTIR 54 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHH
Confidence 45688999999999999988777 77877653
No 118
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=30.03 E-value=59 Score=18.87 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCH-HHHHHcCCcc
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSP-SEAVEYGIMD 67 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta-~EA~eyGliD 67 (91)
+...|+.+.-....+.+.+.+.+|.|+.+... ++... =++- +=|.+.||-|
T Consensus 23 ~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~~-~~si~~IA~~~Gf~~ 83 (107)
T 2k9s_A 23 IASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTT-RMPIATVGRNVGFDD 83 (107)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHTTCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHhCCCC
Confidence 55566667777788888899999988755432 33322 2443 3467778776
No 119
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=29.68 E-value=58 Score=18.68 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHH---------HhhcCCCcCCH-HHHHHcCCcc
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIE---------ADIRRPKYFSP-SEAVEYGIMD 67 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~---------~~m~rd~wmta-~EA~eyGliD 67 (91)
+...|+.+.-....+.+.+.+.+|.|+.+.. .++.. +=++- +=|.+.||-|
T Consensus 22 ~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~-~~~si~~iA~~~Gf~~ 82 (103)
T 3lsg_A 22 LSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT-TELKNYEIAEQVGFED 82 (103)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCC
Confidence 4556666666777888888888898875532 23332 22344 4477778766
No 120
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=28.93 E-value=81 Score=17.65 Aligned_cols=32 Identities=13% Similarity=0.287 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+.....-.+.+.+..
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~~~~~~~~~ 55 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKAALTPEMAIK 55 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 45688999999999999988877888776543
No 121
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.78 E-value=63 Score=16.38 Aligned_cols=31 Identities=13% Similarity=-0.070 Sum_probs=23.7
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.+...
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 47 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYNPSLQLAL 47 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHH
Confidence 3457889999999999988877667776553
No 122
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.57 E-value=70 Score=16.79 Aligned_cols=32 Identities=13% Similarity=-0.023 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+.....-.+.+....
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~~ 52 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETEPNGENLLA 52 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHH
Confidence 45688999999999999988777778776543
No 123
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=27.78 E-value=73 Score=16.76 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=24.6
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.+...
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 56 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQPSLDMLV 56 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHH
Confidence 3557889999999999998877777777654
No 124
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=27.67 E-value=72 Score=16.63 Aligned_cols=45 Identities=9% Similarity=0.016 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 17 EIARKEIKNVKAE---LVKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 17 ~~~a~~l~~~~~~---i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
....+.|...+.. -..-+|+++|.+...|..+.....-.+.+...
T Consensus 12 ~~~~~~l~~~r~~~g~s~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 59 (74)
T 1y7y_A 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNIL 59 (74)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHH
Confidence 3344444444433 24557888999999999888777777776554
No 125
>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4
Probab=26.85 E-value=42 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.404 Sum_probs=18.0
Q ss_pred cCCHHHHHHcCCcceeecCC
Q 039249 54 YFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 54 wmta~EA~eyGliD~I~~~~ 73 (91)
..||..|.+.|+||.|+++.
T Consensus 527 ~~~p~~aa~~g~iD~VI~p~ 546 (587)
T 1pix_A 527 KSRPKVCAELGLVDEIVDMN 546 (587)
T ss_dssp TTSHHHHHHHTSSSEECCTT
T ss_pred hCCHHHHHhcCCCccccCHH
Confidence 58999999999999999863
No 126
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*
Probab=26.77 E-value=19 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=24.1
Q ss_pred CCCcCCHHHHH-HcCCcceeecCCCCCCCchhHhH
Q 039249 51 RPKYFSPSEAV-EYGIMDKVLYTEKSPEDHGVVSD 84 (91)
Q Consensus 51 rd~wmta~EA~-eyGliD~I~~~~~~~~~~~~~~~ 84 (91)
.+.++||.+|+ +.| +|-|+-.++.....++..+
T Consensus 261 g~qv~TP~~Ai~~~G-aD~iVVGRpIt~A~dP~~a 294 (312)
T 3g3d_A 261 GQQYNSPQEVIGKRG-SDIIIVGRGIISAADRLEA 294 (312)
T ss_dssp SCEEBCHHHHHHTTC-CSEEEESHHHHTSSSHHHH
T ss_pred CCcccCHHHHHHhCC-CCEEEEChhhcCCCCHHHH
Confidence 35789999999 777 7888888876554444443
No 127
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=26.60 E-value=71 Score=16.27 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.+...
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 51 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETEPNGENLL 51 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCBHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCCCCHHHHH
Confidence 4568899999999999988776666666543
No 128
>2kii_A Putative uncharacterized protein; H-NOX, unknown function; HET: HEM; NMR {Shewanella oneidensis} PDB: 2kil_A*
Probab=26.39 E-value=42 Score=22.14 Aligned_cols=29 Identities=7% Similarity=0.055 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCCcCC
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPKYFS 56 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~wmt 56 (91)
-.++...++.||+|.+++.+.+.+..+-.
T Consensus 48 ~~lv~a~s~~~g~~~~~ll~~fG~~~~~~ 76 (181)
T 2kii_A 48 FSIVQDVAQRLNMPIQDVVKAFGQFLFNG 76 (181)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 36888899999999999999887765433
No 129
>3uc2_A Hypothetical protein with immunoglobulin-like FOL; structural genomics, joint center for structural genomics; 2.09A {Pseudomonas aeruginosa}
Probab=26.27 E-value=30 Score=22.75 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=13.3
Q ss_pred CCcCCHHHHHHcCCc
Q 039249 52 PKYFSPSEAVEYGIM 66 (91)
Q Consensus 52 d~wmta~EA~eyGli 66 (91)
-+||+|+=|..|||.
T Consensus 37 STFLtPeVA~~Y~I~ 51 (139)
T 3uc2_A 37 SSFLQPNVASAVGLV 51 (139)
T ss_dssp GGGSCHHHHHHTTCC
T ss_pred cccCCHHHHHHcCcc
Confidence 489999999999975
No 130
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=26.26 E-value=1e+02 Score=21.37 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.4
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039249 10 EGQATDVEIARKEIKNVKAELVKLYAKHF 38 (91)
Q Consensus 10 ~G~a~dl~~~a~~l~~~~~~i~~iYa~~T 38 (91)
.|+..-.+++|++|-+.|+.+.+.|.-++
T Consensus 50 kg~~~~arilAkelVR~Rk~~~rl~~~ka 78 (218)
T 3frt_A 50 KGQKDVCIVLAKEMIRSRKAVSKLYASKA 78 (218)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888899999999999999999998653
No 131
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.19 E-value=49 Score=17.33 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.4
Q ss_pred hCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 38 FGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 38 TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
.|-+.+++...+.+-.| +.+.|++|
T Consensus 18 MGF~~~~a~~AL~~~~~-n~e~A~e~ 42 (49)
T 1ify_A 18 MGYERERVVAALRASYN-NPHRAVEY 42 (49)
T ss_dssp TTCCHHHHHHHHHTTTS-CSHHHHHH
T ss_pred cCCCHHHHHHHHHHhCC-CHHHHHHH
Confidence 47899999999988777 99999987
No 132
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=26.11 E-value=74 Score=18.50 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHHHHh-hCCCHHHHHHhhcCCCcCCHHHHHHcC
Q 039249 27 KAELVKLYAKH-FGKTPEQIEADIRRPKYFSPSEAVEYG 64 (91)
Q Consensus 27 ~~~i~~iYa~~-TG~~~e~I~~~m~rd~wmta~EA~eyG 64 (91)
+..+++.++++ +|.+..++...++. .+=.-.+++..|
T Consensus 3 k~eli~~ia~~~~~ls~~~~~~~l~~-~~~~i~~~L~~g 40 (94)
T 1owf_B 3 KSELIERLATQQSHIPAKTVEDAVKE-MLEHMASTLAQG 40 (94)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHH-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHHHHHHhCC
Confidence 35678888988 79999888877652 233344555555
No 133
>1lm5_A Subdomain of desmoplakin carboxy-terminal domain (DPCT); plakin repeat,, structural protein; 1.80A {Homo sapiens} SCOP: d.211.2.1
Probab=25.80 E-value=23 Score=24.47 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCCcCCHHHHHHcCCccee
Q 039249 51 RPKYFSPSEAVEYGIMDKV 69 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~I 69 (91)
...-||-+||++.|+||.-
T Consensus 57 tg~~lsv~eA~~~GlId~~ 75 (214)
T 1lm5_A 57 TGQKLSLQDAVSQGVIDQD 75 (214)
T ss_dssp TCCEECHHHHHHTTSSCHH
T ss_pred CCCcCCHHHHHHcCCCCHH
Confidence 4467999999999999974
No 134
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=25.41 E-value=83 Score=16.62 Aligned_cols=32 Identities=6% Similarity=-0.080 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+.....-.+.+....
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~~~~~~~l~~ 55 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDVQPSLETLFD 55 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHH
Confidence 34578999999999999988777778776543
No 135
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=25.13 E-value=2.2e+02 Score=21.42 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHcCCcceeecC
Q 039249 14 TDVEIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 14 ~dl~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~eyGliD~I~~~ 72 (91)
..+....+.++.++..+.+...-.++.+. +..-+..-=.+|+++|++||+.-=++..
T Consensus 185 ~~~~~i~~~l~~~~~~~~e~~~l~~~n~i--~~~R~~gvGvl~~e~A~~~g~tGp~~Ra 241 (409)
T 3i9v_4 185 EFVPELKKLLEVLPHRIDEYEALFAESPI--FYERARGVGVIPPEVAIDLGLTGGSLRA 241 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCTT--HHHHHSSSSCBCHHHHHHHTCCSSSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhChH--HHhhcCCccccCHHHHHHhCCcCccccc
Confidence 34444445555566555555544444433 2333555578999999999988765543
No 136
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.00 E-value=90 Score=16.89 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=25.1
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+.....-.+.+....
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~~~~~~~~~ 59 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINALNAYNAAL 59 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHH
Confidence 35588999999999999988777777766543
No 137
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=24.81 E-value=26 Score=22.49 Aligned_cols=18 Identities=6% Similarity=0.050 Sum_probs=15.6
Q ss_pred CCCcCCHHHHHHcCCcce
Q 039249 51 RPKYFSPSEAVEYGIMDK 68 (91)
Q Consensus 51 rd~wmta~EA~eyGliD~ 68 (91)
.-.||+++.|.++||.|.
T Consensus 53 ~~v~inp~dA~~lGI~dG 70 (146)
T 2ki8_A 53 NYAEINEEDWNALGLQEG 70 (146)
T ss_dssp SEEEECHHHHHHHTCCTT
T ss_pred CEEEECHHHHHHcCCCCC
Confidence 348999999999999874
No 138
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=24.44 E-value=91 Score=17.51 Aligned_cols=31 Identities=13% Similarity=0.035 Sum_probs=24.6
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.+...
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~~p~~~~l~ 55 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQ 55 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHhCCCCCCHHHHH
Confidence 4558899999999999998877777776543
No 139
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein, signaling protein; HET: HEM; 1.67A {Caldanaerobacter subterraneus} SCOP: d.278.1.1 PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A* 3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A* 3lah_A* 3lai_A*
Probab=23.65 E-value=76 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCCc
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPKY 54 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~w 54 (91)
-.++...++.||+|.++|.+.+.+..+
T Consensus 49 ~~lv~a~s~~~g~~~~~ll~~fG~~~~ 75 (188)
T 3sj5_A 49 RRIFAKVSEKTGKNVNEIWREVGRQNI 75 (188)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 368888999999999999998876543
No 140
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=23.54 E-value=89 Score=17.15 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=22.4
Q ss_pred HHHHhhCCCHHHHHHhhcCCC---cCCHHHH
Q 039249 33 LYAKHFGKTPEQIEADIRRPK---YFSPSEA 60 (91)
Q Consensus 33 iYa~~TG~~~e~I~~~m~rd~---wmta~EA 60 (91)
-.|+++|.+...|...++... -++++-+
T Consensus 5 diA~~aGVS~sTVSrvLng~~~~~~vs~et~ 35 (65)
T 1uxc_A 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTV 35 (65)
T ss_dssp HHHHHHTSCHHHHHHHHHTCTTTTTCTTHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCCCCCCCHHHH
Confidence 468899999999999998766 6776543
No 141
>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}
Probab=23.32 E-value=27 Score=27.30 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.3
Q ss_pred CcCCHHHHHHcCCcceeecC
Q 039249 53 KYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~ 72 (91)
.+-||..+.+.|+||.|+++
T Consensus 472 ~~~~~~~~~~~G~iD~II~p 491 (522)
T 1x0u_A 472 LFANPYWAAEKGLVDDVIEP 491 (522)
T ss_dssp HHSSSHHHHHTTSSSEECCG
T ss_pred hcCCHHHHHhcCCCcEeECH
Confidence 46778889999999999985
No 142
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.85 E-value=29 Score=20.17 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.9
Q ss_pred HHHHHHHHhhCCCHHHHHHhhc
Q 039249 29 ELVKLYAKHFGKTPEQIEADIR 50 (91)
Q Consensus 29 ~i~~iYa~~TG~~~e~I~~~m~ 50 (91)
.-++-++++.|.|...|+.|++
T Consensus 17 vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 17 MEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHH
Confidence 3455688999999999999885
No 143
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=22.56 E-value=1e+02 Score=16.60 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=24.5
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVE 62 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~e 62 (91)
..-+|+++|.+...|..+....+-.+.+....
T Consensus 30 q~elA~~~gis~~~is~~e~g~~~~~~~~l~~ 61 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAERRLDVIEFMD 61 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHH
Confidence 45688889999999998887777777766544
No 144
>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4
Probab=22.36 E-value=45 Score=26.12 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=18.1
Q ss_pred CCcCCHHHHHHcCCcceeecC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~ 72 (91)
+.+.||..+.+.|+||.|+++
T Consensus 476 ~~~~~p~~~~~~g~iD~II~p 496 (527)
T 1vrg_A 476 QQFANPYIAASRGYVDMVIDP 496 (527)
T ss_dssp HHTSSHHHHHHTTSSSEECCG
T ss_pred HhhCCHHHHHHcCCCCeeeCH
Confidence 446888999999999999985
No 145
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=22.30 E-value=1.3e+02 Score=17.84 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
..-+|+++|.+...|..+.....-+|.+.+...
T Consensus 30 q~eLA~~lGis~~~is~ie~G~~~~s~~~~~kl 62 (104)
T 3trb_A 30 ANQLAKHLAIPTNRVTAILNGARSITADTALRL 62 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCHHHHHHH
Confidence 445788999999999999887777888877653
No 146
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=22.28 E-value=84 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCCc
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPKY 54 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~w 54 (91)
-.++...++.||+|.++|.+.+.+..+
T Consensus 49 ~~lv~~~s~~~g~~~~~ll~~fG~~~~ 75 (189)
T 3tfg_A 49 YHLVGAASEVLGKPAEEWWIAFGEYWV 75 (189)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 357888999999999999998876543
No 147
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=22.15 E-value=97 Score=16.25 Aligned_cols=31 Identities=16% Similarity=-0.027 Sum_probs=23.2
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHH
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAV 61 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ 61 (91)
..-+|+++|.+...|..+.....-.+.....
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~~~~~~l~ 56 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRNISLINIH 56 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSCCBHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCCCCHHHHH
Confidence 4557888999999998888766666666543
No 148
>3ic3_A Putative pyruvate dehydrogenase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=22.12 E-value=1.3e+02 Score=18.64 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCHHHHH
Q 039249 22 EIKNVKAELVKLYAKHFGKTPEQIE 46 (91)
Q Consensus 22 ~l~~~~~~i~~iYa~~TG~~~e~I~ 46 (91)
-|-.+-+.+.++|+..+|.+.++..
T Consensus 52 lLaDlarHaA~a~a~~~~~s~~eal 76 (101)
T 3ic3_A 52 LLVDIARHAARSYARESEYTEDEAL 76 (101)
T ss_dssp HHHHHHHHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4566777899999999999988733
No 149
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=21.99 E-value=70 Score=21.27 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCHHHHHHhhcCCCcCCHHHHHHc
Q 039249 31 VKLYAKHFGKTPEQIEADIRRPKYFSPSEAVEY 63 (91)
Q Consensus 31 ~~iYa~~TG~~~e~I~~~m~rd~wmta~EA~ey 63 (91)
-+-.|+++|+|..-+.+.+-.-..+|+++|...
T Consensus 29 we~IAe~iG~S~v~vtaa~lGQ~~ls~e~A~kL 61 (156)
T 1dw9_A 29 FAEIADGTGLAEAFVTAALLGQQALPADAARLV 61 (156)
T ss_dssp HHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCCCCHHHHHHH
Confidence 344688899999989999999999999998753
No 150
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=21.16 E-value=2.1e+02 Score=20.36 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCC
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRP 52 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd 52 (91)
+...+++++.+|.+.+.+...+.++
T Consensus 288 ~~~~~i~~~~~~~~~~~~~~~~~~~ 312 (365)
T 2de3_A 288 DAVTSLHAANLGVSTGAVGQGFGAD 312 (365)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhhh
Confidence 4567888999999999998888764
No 151
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=20.99 E-value=60 Score=19.60 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHH---------hhcCCCcCCHHHHHHcCCcc
Q 039249 16 VEIARKEIKNVKAELVKLYAKHFGKTPEQIEA---------DIRRPKYFSPSEAVEYGIMD 67 (91)
Q Consensus 16 l~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~---------~m~rd~wmta~EA~eyGliD 67 (91)
+...|+.+.-....+.+.+.+.+|.++.+... ++....+=-.+=|.+.||-|
T Consensus 30 l~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~ 90 (129)
T 1bl0_A 30 LEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFES 90 (129)
T ss_dssp CHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCC
Confidence 34445555556677788888888877755332 33222222233466777766
No 152
>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*
Probab=20.94 E-value=43 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.9
Q ss_pred CCcCCHHHHHHcCCcceeecC
Q 039249 52 PKYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 52 d~wmta~EA~eyGliD~I~~~ 72 (91)
+.+.||..+.+.|+||.|+++
T Consensus 472 ~~~~~p~~~a~~g~iD~II~p 492 (523)
T 1on3_A 472 NAFNTPYVAAARGQVDDVIDP 492 (523)
T ss_dssp HHHSSHHHHHHTTSSSEECCG
T ss_pred HhhCCHHHHHhcCCCCEeeCH
Confidence 345788889999999999985
No 153
>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A
Probab=20.56 E-value=31 Score=27.25 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.9
Q ss_pred CcCCHHHHHHcCCcceeecC
Q 039249 53 KYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 53 ~wmta~EA~eyGliD~I~~~ 72 (91)
.+.+|..+.+.|+||.|+++
T Consensus 498 ~~~~p~~~a~~g~iD~II~p 517 (548)
T 2bzr_A 498 TLVNPYVAAERGYVGAVIPP 517 (548)
T ss_dssp HHSBSHHHHHTTSSSEECCG
T ss_pred hhCCHHHHHhcCCCceeeCH
Confidence 35677789999999999985
No 154
>2gmy_A Hypothetical protein ATU0492; structural genomics, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: a.152.1.3
Probab=20.30 E-value=23 Score=22.47 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=30.4
Q ss_pred HHhhCCCHHHHHHhhc-CC-CcCCHHHHHHcCCcceeecC
Q 039249 35 AKHFGKTPEQIEADIR-RP-KYFSPSEAVEYGIMDKVLYT 72 (91)
Q Consensus 35 a~~TG~~~e~I~~~m~-rd-~wmta~EA~eyGliD~I~~~ 72 (91)
+.+.|.+.++|..... ++ ..+++.|..-+.|++.+...
T Consensus 59 a~~~G~~~~~i~~l~~~~~~~~~~~~e~A~l~~a~~lt~~ 98 (153)
T 2gmy_A 59 SRHDGLSEQWINLMSVWRESPVYTEQERALLGWVDAVTKI 98 (153)
T ss_dssp HHHTTCCHHHHHGGGGGGGCTTSCHHHHHHHHHHHHHHTH
T ss_pred HHHcCCCHHHHHHHhcccccCCCCHHHHHHHHHHHHHHhc
Confidence 4567999999988754 32 47899999999999998764
No 155
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=20.30 E-value=1.1e+02 Score=21.16 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhCCCHHHHHHhhcCCC
Q 039249 28 AELVKLYAKHFGKTPEQIEADIRRPK 53 (91)
Q Consensus 28 ~~i~~iYa~~TG~~~e~I~~~m~rd~ 53 (91)
+...+++++ +|.+.+.+...+.+..
T Consensus 239 ~e~~~~~~~-~~~~~~~~~~~~~~~~ 263 (348)
T 3uif_A 239 ETYIREYSN-KIYPESVNRREYDQDN 263 (348)
T ss_dssp HHHHHHTSC-TTSCHHHHHHTTTTCS
T ss_pred HHHHHHHHH-cCCCHHHHHHHhcccc
Confidence 345556666 8899998888887654
No 156
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=20.19 E-value=99 Score=22.12 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=23.6
Q ss_pred CHHHHHHhhcC---CCcCCHHHHHHcCCcceeecCC
Q 039249 41 TPEQIEADIRR---PKYFSPSEAVEYGIMDKVLYTE 73 (91)
Q Consensus 41 ~~e~I~~~m~r---d~wmta~EA~eyGliD~I~~~~ 73 (91)
.++.|.+.+.+ +-|=+|+-..+.|+||.|++++
T Consensus 232 GP~vi~~~~~~~~~e~~~~Ae~~~~~G~iD~Iv~~~ 267 (285)
T 2f9i_B 232 GRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRN 267 (285)
T ss_dssp CHHHHHHHHTSCCCTTTTBHHHHHHTTCCSEECCGG
T ss_pred CHHHHHHHhcccchHhHhhHHHHHhcCCccEEeChH
Confidence 34555554433 4577899899999999998853
No 157
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.08 E-value=1.7e+02 Score=19.35 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHhhcC-CCcCCHHH
Q 039249 17 EIARKEIKNVKAELVKLYAKHFGKTPEQIEADIRR-PKYFSPSE 59 (91)
Q Consensus 17 ~~~a~~l~~~~~~i~~iYa~~TG~~~e~I~~~m~r-d~wmta~E 59 (91)
+..+..+.+..+.+...+.+..|.+.+++.+..++ ++++|.+-
T Consensus 65 ~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~~~a~~lEh~~s~~~ 108 (214)
T 3hrs_A 65 LKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLEHTVSDHF 108 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCHHH
Confidence 34455555555566666667789999998887665 78888654
Done!