Query 039250
Match_columns 571
No_of_seqs 234 out of 1634
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:48:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 8E-105 2E-109 861.4 62.5 531 32-571 2-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 3E-103 7E-108 840.6 59.8 511 31-571 25-554 (596)
3 PLN02991 oxidoreductase 100.0 2E-102 4E-107 831.0 59.1 498 31-571 26-530 (543)
4 PLN02354 copper ion binding / 100.0 5E-102 1E-106 832.7 59.1 522 3-571 2-538 (552)
5 PLN02792 oxidoreductase 100.0 7E-102 1E-106 827.9 57.9 502 30-571 13-523 (536)
6 PLN02835 oxidoreductase 100.0 1E-101 2E-106 829.6 59.3 491 30-571 26-531 (539)
7 PLN02168 copper ion binding / 100.0 2E-100 5E-105 816.1 58.4 499 31-571 24-541 (545)
8 KOG1263 Multicopper oxidases [ 100.0 3.3E-99 7E-104 800.3 59.2 517 30-571 25-555 (563)
9 PLN02191 L-ascorbate oxidase 100.0 4.2E-96 9E-101 792.8 58.7 526 1-571 1-561 (574)
10 PLN02604 oxidoreductase 100.0 2E-94 4.4E-99 781.7 59.9 510 31-571 22-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 1E-94 2.2E-99 782.1 57.4 505 33-571 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 7.9E-92 1.7E-96 757.2 53.5 484 34-555 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 3E-77 6.4E-82 642.6 50.7 416 32-551 44-586 (587)
14 PRK10965 multicopper oxidase; 100.0 2.9E-75 6.3E-80 623.1 45.3 428 33-552 45-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 7.4E-74 1.6E-78 607.4 45.1 403 35-553 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 5.1E-58 1.1E-62 489.1 42.7 413 35-552 34-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 3.1E-47 6.7E-52 383.5 25.4 264 30-318 24-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 3.3E-35 7.1E-40 252.9 12.0 116 39-154 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 2.1E-29 4.6E-34 225.8 12.1 107 444-553 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 1.4E-26 3.1E-31 212.0 12.7 150 165-317 1-159 (159)
21 TIGR03095 rusti_cyanin rusticy 99.7 1.2E-16 2.5E-21 142.8 12.2 102 48-151 37-148 (148)
22 TIGR01480 copper_res_A copper- 99.7 3.8E-15 8.3E-20 161.6 22.0 228 55-296 249-574 (587)
23 TIGR02376 Cu_nitrite_red nitri 99.7 3.5E-14 7.6E-19 143.6 25.7 244 196-553 47-297 (311)
24 PRK10965 multicopper oxidase; 99.5 8.3E-13 1.8E-17 142.4 20.2 234 51-298 211-512 (523)
25 PRK10883 FtsI repressor; Provi 99.4 1.2E-11 2.6E-16 132.2 20.8 224 49-299 206-458 (471)
26 TIGR03389 laccase laccase, pla 99.4 3.3E-11 7.1E-16 131.5 24.4 237 53-298 167-509 (539)
27 PLN02835 oxidoreductase 99.4 4.1E-11 8.9E-16 129.8 23.2 242 52-297 191-500 (539)
28 TIGR03096 nitroso_cyanin nitro 99.3 9.2E-12 2E-16 107.4 11.7 94 31-140 22-123 (135)
29 COG2132 SufI Putative multicop 99.2 2.6E-10 5.6E-15 122.3 16.9 235 49-298 186-438 (451)
30 PLN02792 oxidoreductase 99.1 2E-08 4.4E-13 108.7 26.0 244 51-297 178-492 (536)
31 PLN02991 oxidoreductase 99.1 1.8E-08 3.8E-13 109.0 25.5 242 51-295 189-497 (543)
32 TIGR03388 ascorbase L-ascorbat 99.1 7.5E-09 1.6E-13 113.0 22.4 233 64-298 203-513 (541)
33 PLN02604 oxidoreductase 99.1 3.1E-09 6.8E-14 116.4 18.7 233 64-298 224-536 (566)
34 TIGR03390 ascorbOXfungal L-asc 99.1 1.2E-08 2.7E-13 111.1 22.6 244 53-298 172-521 (538)
35 PLN02168 copper ion binding / 99.1 1.2E-08 2.7E-13 110.4 22.0 239 52-294 188-501 (545)
36 PLN02354 copper ion binding / 99.1 1.3E-08 2.8E-13 110.7 21.2 241 52-295 189-505 (552)
37 PLN02191 L-ascorbate oxidase 98.9 7.1E-08 1.5E-12 105.7 20.5 231 64-298 226-536 (574)
38 PF07731 Cu-oxidase_2: Multico 98.8 3E-08 6.5E-13 88.5 10.6 81 215-297 32-123 (138)
39 PF07732 Cu-oxidase_3: Multico 98.7 6.1E-08 1.3E-12 83.6 8.2 90 449-554 26-116 (117)
40 PLN00044 multi-copper oxidase- 98.7 3.4E-06 7.3E-11 92.2 22.3 238 197-532 49-291 (596)
41 PRK02710 plastocyanin; Provisi 98.4 5.8E-06 1.3E-10 71.5 12.1 73 64-151 47-119 (119)
42 PF13473 Cupredoxin_1: Cupredo 98.4 1.4E-06 3.1E-11 73.6 7.8 74 60-150 31-104 (104)
43 KOG1263 Multicopper oxidases [ 98.3 0.00017 3.7E-09 78.2 23.0 236 196-536 47-286 (563)
44 TIGR02656 cyanin_plasto plasto 98.2 6.7E-06 1.5E-10 68.7 8.6 82 63-151 16-99 (99)
45 PF00394 Cu-oxidase: Multicopp 98.1 2.2E-05 4.7E-10 71.8 9.7 93 448-552 59-156 (159)
46 PF00127 Copper-bind: Copper b 98.1 1.4E-05 3E-10 66.8 7.5 82 64-151 17-99 (99)
47 TIGR03095 rusti_cyanin rusticy 98.0 3E-05 6.5E-10 69.5 9.8 89 449-551 52-147 (148)
48 TIGR02657 amicyanin amicyanin. 97.9 7.5E-05 1.6E-09 60.2 8.7 74 63-151 10-83 (83)
49 PRK02888 nitrous-oxide reducta 97.6 0.00024 5.1E-09 76.9 9.7 98 45-153 534-635 (635)
50 PF06525 SoxE: Sulfocyanin (So 97.6 0.0013 2.7E-08 60.7 12.4 102 53-155 74-190 (196)
51 TIGR02656 cyanin_plasto plasto 97.5 0.00051 1.1E-08 57.3 7.9 83 449-552 17-99 (99)
52 TIGR03094 sulfo_cyanin sulfocy 97.4 0.0015 3.3E-08 58.8 10.6 101 54-155 74-189 (195)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.0011 2.3E-08 56.7 8.8 75 64-154 15-90 (116)
54 COG3794 PetE Plastocyanin [Ene 97.2 0.0022 4.8E-08 55.4 8.4 75 64-152 54-128 (128)
55 TIGR03102 halo_cynanin halocya 97.2 0.0033 7.1E-08 53.7 9.3 73 64-151 42-115 (115)
56 TIGR03096 nitroso_cyanin nitro 97.1 0.0029 6.3E-08 55.1 8.1 60 449-537 61-120 (135)
57 PF00127 Copper-bind: Copper b 96.6 0.018 3.9E-07 48.0 9.1 83 449-552 17-99 (99)
58 PF13473 Cupredoxin_1: Cupredo 96.4 0.015 3.2E-07 49.0 8.0 62 449-539 35-96 (104)
59 PRK02888 nitrous-oxide reducta 96.4 0.017 3.6E-07 62.9 9.5 78 450-553 556-634 (635)
60 PRK02710 plastocyanin; Provisi 96.1 0.031 6.7E-07 48.3 8.2 73 449-552 47-119 (119)
61 TIGR02375 pseudoazurin pseudoa 95.5 0.063 1.4E-06 45.9 7.6 37 521-559 58-94 (116)
62 COG4454 Uncharacterized copper 94.1 0.099 2.1E-06 46.3 5.2 94 450-552 64-157 (158)
63 TIGR02695 azurin azurin. Azuri 93.9 0.36 7.7E-06 41.4 8.0 88 62-149 14-124 (125)
64 COG4454 Uncharacterized copper 93.2 1.5 3.3E-05 39.0 11.1 88 60-152 59-158 (158)
65 PF00116 COX2: Cytochrome C ox 92.5 1.1 2.3E-05 38.8 9.2 73 63-150 45-119 (120)
66 PF06525 SoxE: Sulfocyanin (So 92.3 0.99 2.2E-05 41.9 9.1 96 447-554 84-188 (196)
67 TIGR02657 amicyanin amicyanin. 92.0 0.97 2.1E-05 36.1 7.8 72 449-551 11-82 (83)
68 TIGR03094 sulfo_cyanin sulfocy 91.9 1.4 3E-05 40.3 9.2 98 447-554 83-187 (195)
69 TIGR03102 halo_cynanin halocya 91.5 1.2 2.6E-05 38.0 8.2 74 449-552 42-115 (115)
70 PF00116 COX2: Cytochrome C ox 91.2 3.4 7.3E-05 35.7 10.8 75 447-551 44-119 (120)
71 PRK10378 inactive ferrous ion 88.2 5.5 0.00012 41.3 11.4 79 60-154 40-119 (375)
72 TIGR02866 CoxB cytochrome c ox 85.0 4.5 9.8E-05 38.3 8.3 77 449-555 117-194 (201)
73 PF12690 BsuPI: Intracellular 83.7 10 0.00022 30.2 8.5 65 227-292 4-82 (82)
74 PF12690 BsuPI: Intracellular 82.9 2.9 6.3E-05 33.3 5.1 59 64-133 16-80 (82)
75 TIGR02695 azurin azurin. Azuri 79.8 12 0.00025 32.3 7.9 79 216-294 15-112 (125)
76 TIGR02866 CoxB cytochrome c ox 76.7 9.4 0.0002 36.2 7.3 76 64-154 117-194 (201)
77 COG3794 PetE Plastocyanin [Ene 74.7 17 0.00037 31.6 7.6 74 449-552 54-127 (128)
78 COG1622 CyoA Heme/copper-type 72.9 15 0.00032 36.0 7.6 77 64-155 137-215 (247)
79 COG1622 CyoA Heme/copper-type 69.6 21 0.00045 35.0 7.9 77 449-555 137-214 (247)
80 COG4263 NosZ Nitrous oxide red 69.3 5.8 0.00013 41.4 4.1 77 64-151 558-636 (637)
81 MTH00047 COX2 cytochrome c oxi 59.2 69 0.0015 30.1 9.0 76 449-554 116-192 (194)
82 PF05506 DUF756: Domain of unk 59.2 70 0.0015 25.7 8.0 63 63-134 8-73 (89)
83 PF07705 CARDB: CARDB; InterP 58.5 92 0.002 24.9 8.9 67 220-295 14-84 (101)
84 TIGR03079 CH4_NH3mon_ox_B meth 55.5 69 0.0015 32.9 8.6 16 109-124 337-352 (399)
85 COG1470 Predicted membrane pro 54.9 3E+02 0.0064 29.5 16.5 180 66-297 278-470 (513)
86 PF04151 PPC: Bacterial pre-pe 51.9 1E+02 0.0022 23.3 7.5 66 216-293 4-69 (70)
87 MTH00140 COX2 cytochrome c oxi 51.3 71 0.0015 30.9 8.0 77 448-554 139-216 (228)
88 PF01835 A2M_N: MG2 domain; I 48.4 58 0.0013 26.5 6.1 70 220-295 10-86 (99)
89 PF14344 DUF4397: Domain of un 48.4 1.7E+02 0.0036 24.8 11.3 37 247-283 45-83 (122)
90 PF05938 Self-incomp_S1: Plant 48.3 1.2E+02 0.0027 25.2 8.2 70 75-153 2-71 (110)
91 PF10633 NPCBM_assoc: NPCBM-as 47.7 80 0.0017 24.5 6.4 64 222-294 2-75 (78)
92 PTZ00047 cytochrome c oxidase 46.5 85 0.0018 28.5 7.0 75 449-553 73-148 (162)
93 TIGR01433 CyoA cytochrome o ub 45.2 66 0.0014 31.1 6.7 77 449-555 139-216 (226)
94 TIGR01433 CyoA cytochrome o ub 44.9 67 0.0014 31.0 6.6 63 217-298 139-201 (226)
95 COG2967 ApaG Uncharacterized p 43.9 31 0.00068 29.3 3.5 54 76-130 34-95 (126)
96 KOG4063 Major epididymal secre 41.5 2.1E+02 0.0044 25.6 8.3 61 65-125 49-123 (158)
97 PF04744 Monooxygenase_B: Mono 41.0 61 0.0013 33.3 5.8 16 109-124 318-333 (381)
98 MTH00047 COX2 cytochrome c oxi 40.2 2.1E+02 0.0045 26.9 9.0 62 218-298 117-178 (194)
99 PF04379 DUF525: Protein of un 40.0 34 0.00073 27.8 3.2 48 226-276 15-66 (90)
100 PRK05461 apaG CO2+/MG2+ efflux 39.5 63 0.0014 28.1 5.0 48 226-276 32-83 (127)
101 PF07691 PA14: PA14 domain; I 38.7 2E+02 0.0042 24.9 8.4 62 218-284 53-121 (145)
102 TIGR03396 PC_PLC phospholipase 38.4 1.7E+02 0.0037 33.2 9.4 67 62-137 592-661 (690)
103 MTH00140 COX2 cytochrome c oxi 37.5 1.1E+02 0.0023 29.7 6.8 63 217-298 140-202 (228)
104 COG1188 Ribosome-associated he 37.5 29 0.00062 28.7 2.4 34 52-85 33-66 (100)
105 TIGR01432 QOXA cytochrome aa3 37.2 90 0.002 29.9 6.2 63 217-298 130-192 (217)
106 COG3354 FlaG Putative archaeal 36.3 2.1E+02 0.0045 25.4 7.5 64 225-293 70-141 (154)
107 smart00758 PA14 domain in bact 33.3 2.6E+02 0.0056 24.0 8.2 62 218-284 51-113 (136)
108 PF11322 DUF3124: Protein of u 33.2 1.1E+02 0.0024 26.5 5.3 53 228-284 28-80 (125)
109 MTH00023 COX2 cytochrome c oxi 32.5 1.7E+02 0.0038 28.4 7.4 77 448-554 150-227 (240)
110 PRK13202 ureB urease subunit b 31.8 1.4E+02 0.0031 24.8 5.5 59 65-123 12-83 (104)
111 TIGR01432 QOXA cytochrome aa3 31.4 1.7E+02 0.0036 28.0 7.0 77 449-555 130-207 (217)
112 MTH00008 COX2 cytochrome c oxi 30.7 2E+02 0.0044 27.7 7.5 77 448-554 139-216 (228)
113 MTH00008 COX2 cytochrome c oxi 28.6 1.9E+02 0.0041 28.0 6.9 62 217-297 140-201 (228)
114 cd00916 Npc2_like Niemann-Pick 28.6 2E+02 0.0043 24.7 6.4 17 108-124 75-91 (123)
115 PF11142 DUF2917: Protein of u 28.6 1.6E+02 0.0034 22.1 5.0 46 219-276 2-47 (63)
116 PRK05461 apaG CO2+/MG2+ efflux 28.2 1.1E+02 0.0025 26.5 4.8 20 102-122 67-86 (127)
117 MTH00129 COX2 cytochrome c oxi 26.3 1.9E+02 0.004 28.0 6.4 57 218-293 141-197 (230)
118 MTH00098 COX2 cytochrome c oxi 26.1 2E+02 0.0043 27.8 6.6 62 217-297 140-201 (227)
119 PF14451 Ub-Mut7C: Mut7-C ubiq 26.1 61 0.0013 25.7 2.5 28 50-77 47-74 (81)
120 MTH00098 COX2 cytochrome c oxi 25.1 2.8E+02 0.0061 26.7 7.4 76 449-554 140-216 (227)
121 MTH00038 COX2 cytochrome c oxi 24.7 2.9E+02 0.0063 26.7 7.4 76 448-553 139-215 (229)
122 cd00918 Der-p2_like Several gr 24.5 2.4E+02 0.0052 24.2 6.1 60 64-124 20-87 (120)
123 MTH00185 COX2 cytochrome c oxi 23.2 3.4E+02 0.0074 26.2 7.6 76 448-553 139-215 (230)
124 PRK13203 ureB urease subunit b 23.0 2.6E+02 0.0057 23.2 5.6 59 65-123 12-82 (102)
125 MTH00051 COX2 cytochrome c oxi 22.7 4E+02 0.0088 25.8 8.0 74 218-311 145-218 (234)
126 TIGR00192 urease_beta urease, 22.4 2.7E+02 0.0059 23.0 5.5 59 65-123 12-82 (101)
127 MTH00185 COX2 cytochrome c oxi 22.4 3E+02 0.0065 26.6 7.0 63 217-298 140-202 (230)
128 PF10989 DUF2808: Protein of u 22.3 96 0.0021 27.6 3.3 28 512-539 98-129 (146)
129 PRK10525 cytochrome o ubiquino 22.3 2E+02 0.0042 29.4 5.9 64 217-299 151-214 (315)
130 PF10989 DUF2808: Protein of u 21.2 1.2E+02 0.0026 27.0 3.7 30 109-138 96-128 (146)
131 PF14874 PapD-like: Flagellar- 21.2 4.4E+02 0.0096 21.2 9.0 59 220-290 15-82 (102)
132 TIGR02988 YaaA_near_RecF S4 do 20.4 63 0.0014 23.6 1.5 23 54-76 35-58 (59)
133 PF04744 Monooxygenase_B: Mono 20.4 1.1E+02 0.0024 31.6 3.5 35 102-138 73-108 (381)
134 PF14524 Wzt_C: Wzt C-terminal 20.2 2.8E+02 0.0062 23.6 6.0 73 219-294 29-107 (142)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=8.3e-105 Score=861.45 Aligned_cols=531 Identities=56% Similarity=1.029 Sum_probs=434.5
Q ss_pred ceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCc
Q 039250 32 STRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCP 111 (571)
Q Consensus 32 ~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~ 111 (571)
++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|+++++++|||||+++.+++|+||+|++|||+
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCcceeEeecccccccceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhCCC
Q 039250 112 IQSGQTFTYEFTMFQQKGTFFWHAHVSWLRGTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLASGG 191 (571)
Q Consensus 112 i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 191 (571)
|+||++|+|+|++++++||||||||.+.+++||+|+|||+++.+.+.+++.+|+|++|+++||++.....++......+.
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 161 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGG 161 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCC
Confidence 99999999999996699999999999988889999999999877667776789999999999999988777666655665
Q ss_pred CCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCC
Q 039250 192 APPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGP 271 (571)
Q Consensus 192 ~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~p 271 (571)
.+.++|.++|||+.++.+.|+....+.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|+.++++.|++
T Consensus 162 ~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~~ 241 (539)
T TIGR03389 162 APNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIGP 241 (539)
T ss_pred CCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEecC
Confidence 56678999999998877888887788999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCccchhhhcccCccCC--
Q 039250 272 GQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS-LALPATLPRFNDNLAVKTVMDGLRSLN-- 348 (571)
Q Consensus 272 geR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~~~~~~~~~~~~~~l~~l~-- 348 (571)
||||||+|++++++|+|||++.....+.. .+......|+|+|++..... +..+ ..+..++......+..+++.+.
T Consensus 242 GqRydVlv~a~~~~g~y~i~~~~~~~~~~-~~~~~~~~ail~Y~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 319 (539)
T TIGR03389 242 GQTTNVLLTADQSPGRYFMAARPYMDAPG-AFDNTTTTAILQYKGTSNSAKPILP-TLPAYNDTAAATNFSNKLRSLNSA 319 (539)
T ss_pred CCEEEEEEECCCCCceEEEEEeccccCcc-CCCCcceEEEEEECCCCCCCCCCCC-CCCCCCchhhhhHHHhhccccccc
Confidence 99999999999888999999987644432 12334678999999865432 1112 2222222211111112233332
Q ss_pred --CCCCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCcc
Q 039250 349 --PVPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLK 426 (571)
Q Consensus 349 --p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~ 426 (571)
+...|..+++++.+.+........ ...+...++..+.|.+|+++|..|+.|+|.+.+.+..|.+..+++..+|.
T Consensus 320 ~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~ 395 (539)
T TIGR03389 320 QYPANVPVTIDRRLFFTIGLGLDPCP----NNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPT 395 (539)
T ss_pred CCCCCCCCCCCeEEEEEeecccccCc----ccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCc
Confidence 223344567776666654321110 00011123456789999999998988998887776667666677778888
Q ss_pred ccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCC--CCCCCCCC
Q 039250 427 FYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQ--TANFNLID 504 (571)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~--~~~~~~~~ 504 (571)
.|++++..... +.....++.++.++.|++|||+|+|.+......||||||||+||||++|.|.|+.. ...+|+.+
T Consensus 396 ~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~n 472 (539)
T TIGR03389 396 KFNYTGTNLPN---NLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVD 472 (539)
T ss_pred cccCCCCCccc---ccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCC
Confidence 88766532000 11123466789999999999999996432245899999999999999999998753 23688999
Q ss_pred CCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 505 PPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 505 p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+.++++..++++++|..+++|
T Consensus 473 P~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 473 PPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999998877778899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=3.3e-103 Score=840.57 Aligned_cols=511 Identities=27% Similarity=0.433 Sum_probs=415.4
Q ss_pred cceEEEEEEEEEEEeecCC--ceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccc
Q 039250 31 RSTRFYEFKIQATRVNKLC--NAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYIT 108 (571)
Q Consensus 31 ~~~~~~~l~i~~~~~~~~g--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~ 108 (571)
+.+++|+|+|++..+++|| ..+++++|||++|||+|++++||+|+|+|+|+++++++|||||++|+.++|+||+++ +
T Consensus 25 ~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~-T 103 (596)
T PLN00044 25 DPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGG-T 103 (596)
T ss_pred CceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCC-C
Confidence 5789999999999999999 557899999999999999999999999999999999999999999999999999988 9
Q ss_pred cCcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCC-ccEEEEEeeEeeccHHHHHHHH
Q 039250 109 QCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPY-QEHIIILGEYWLQDVVQLERQV 186 (571)
Q Consensus 109 q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~-~e~~l~~~d~~~~~~~~~~~~~ 186 (571)
||+|+||++|+|+|++++++||||||+|...+++ ||+|+|||++++..+.|+...+ +|.+++++||++.+...+ ...
T Consensus 104 QcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~-~~~ 182 (596)
T PLN00044 104 NCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRAL-RRA 182 (596)
T ss_pred cCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHH-HHH
Confidence 9999999999999999779999999999998876 9999999999876666665444 799999999999886654 334
Q ss_pred hhCCCCCCCCCcEEEcCccCCCCCCC----CCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCee
Q 039250 187 LASGGAPPPSNAYTINGHPGPNYNCS----ANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPF 262 (571)
Q Consensus 187 ~~~g~~~~~~~~~~iNG~~~~~~~~~----~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~ 262 (571)
...|.....++..+|||+....++|. +...+.++|++||+|||||||++....+.|+|+||+|+|||+||.+++|+
T Consensus 183 l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~P~ 262 (596)
T PLN00044 183 LDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTSQQ 262 (596)
T ss_pred HhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccCce
Confidence 44555556789999999933223443 34557899999999999999999999999999999999999999999999
Q ss_pred EeceEEeCCCceEEEEEEeCCCCc-eeEEEeec-ccccCCCccCCcceEEEEEEcCCCCCC-CCCCCCCCC-CCCccchh
Q 039250 263 STDRVMLGPGQTVNVLVTADQPIG-KYSMAMGP-YMSAQGVSFQNISAIAYFQYLGAQPNS-LALPATLPR-FNDNLAVK 338 (571)
Q Consensus 263 ~~d~l~l~pgeR~dv~v~~~~~~g-~~~i~~~~-~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~-~~~~~~~~ 338 (571)
.++.|.|++||||||+|+++++++ +|||++.. +..+. .++.....|||+|.++.... ...| ..|. +++.....
T Consensus 263 ~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~--~~~~~~~~AIl~Y~~~~~~~~~~~P-~~p~~~~d~~~~~ 339 (596)
T PLN00044 263 NYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA--VVDKLTGVAILHYSNSQGPASGPLP-DAPDDQYDTAFSI 339 (596)
T ss_pred eeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc--cccCcceeEEEEECCCCCCCCCCCC-CCCcccCCchhhh
Confidence 999999999999999999998765 89999864 22322 13445678999998865321 1234 4453 55554443
Q ss_pred hhcccCccCCC----CCCCccCceEEEEEEeccc-cccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccC
Q 039250 339 TVMDGLRSLNP----VPVPKEIDANLFVTIGLNV-QKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKID 413 (571)
Q Consensus 339 ~~~~~l~~l~p----~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~ 413 (571)
.+...++.+.. ...|...+....+++.... ..+. ....| .++..|++||.+|..|+.|+|.+++.+..
T Consensus 340 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~----~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~ 412 (596)
T PLN00044 340 NQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSM---APELI----DGKLRATLNEISYIAPSTPLMLAQIFNVP 412 (596)
T ss_pred hhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccc---ccccc----CCeEEEEECcccCCCCCCcchhhhhccCC
Confidence 34344443221 1222333333333332211 0110 00111 13678999999999999999988888888
Q ss_pred cccccCCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCC
Q 039250 414 GIFTEDFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNY 493 (571)
Q Consensus 414 g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~ 493 (571)
|.+..+++..||.. ....++.++.++.|++|||+|+|.. ...||||||||+|+||++|.|.|
T Consensus 413 gv~~~~fp~~pp~~---------------~~~~~t~v~~~~~n~~VeiV~qn~~---~~~HP~HLHGh~F~Vvg~G~G~~ 474 (596)
T PLN00044 413 GVFKLDFPNHPMNR---------------LPKLDTSIINGTYKGFMEIIFQNNA---TNVQSYHLDGYAFFVVGMDYGLW 474 (596)
T ss_pred CcccCCCCCCCCcc---------------ccccCceEEEcCCCCEEEEEEeCCC---CCCCCeeEcCccEEEEeecCCCC
Confidence 99988888877641 0133568889999999999999964 36999999999999999999999
Q ss_pred CCC-CCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCC-CCcCCCCCCCCCCC
Q 039250 494 DPQ-TANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGE-LETLPHPPADFPRC 571 (571)
Q Consensus 494 ~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~-~~~~~~~p~~~~~c 571 (571)
++. +..||+.||++||||.||++||++|||++||||.|+|||||+.|...||.++|.|.++.+. .+++++||.++++|
T Consensus 475 ~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 475 TDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcc
Confidence 865 4578999999999999999999999999999999999999999999999999999999875 78999999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.7e-102 Score=830.98 Aligned_cols=498 Identities=25% Similarity=0.421 Sum_probs=400.5
Q ss_pred cceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccC
Q 039250 31 RSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQC 110 (571)
Q Consensus 31 ~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~ 110 (571)
+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+++++++|||||++|.+++||||+++ +||
T Consensus 26 ~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQc 104 (543)
T PLN02991 26 DPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TTC 104 (543)
T ss_pred CceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998 999
Q ss_pred cCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhC
Q 039250 111 PIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLAS 189 (571)
Q Consensus 111 ~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 189 (571)
+|+||++|+|+|++++++||||||+|.+.+++ ||+|+|||++++..+.++..+++|++++++||+++....+.... ..
T Consensus 105 pI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~-~~ 183 (543)
T PLN02991 105 PIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL-DN 183 (543)
T ss_pred ccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh-hc
Confidence 99999999999999668999999999988865 99999999988766666667789999999999998876654333 34
Q ss_pred CCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEe
Q 039250 190 GGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVML 269 (571)
Q Consensus 190 g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l 269 (571)
++..+.+|.++|||+. ..+.++|++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|
T Consensus 184 ~~~~~~~d~~liNG~~---------~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~i 254 (543)
T PLN02991 184 GGKLPLPDGILINGRG---------SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLDV 254 (543)
T ss_pred CCCCCCCCEEEEccCC---------CCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEEE
Confidence 4455689999999993 2368999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCcc--chhhhcccCcc
Q 039250 270 GPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS-LALPATLPRFNDNL--AVKTVMDGLRS 346 (571)
Q Consensus 270 ~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~~~~~~--~~~~~~~~l~~ 346 (571)
++||||||+|++++++|+|||++...... ......|||+|+++.... .+.| ..|...... ........+.+
T Consensus 255 ~~GQRydvlv~a~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~~~~p-~~p~~~~~~~~~~~~~~~~l~p 328 (543)
T PLN02991 255 HVGQSYSVLITADQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVSGPIP-DGPIQLSWSFDQARAIKTNLTA 328 (543)
T ss_pred cCCcEEEEEEECCCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCCCCCC-CCCccccccccchhhhhhcccC
Confidence 99999999999999899999998763222 123578999999875321 1122 222111000 01111123333
Q ss_pred CCCCCCCccCceEEEEEEeccc-cccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccC-CCCCC
Q 039250 347 LNPVPVPKEIDANLFVTIGLNV-QKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTED-FPEAP 424 (571)
Q Consensus 347 l~p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~-~~~~~ 424 (571)
..+...|...+....+.+.... ..+. ...+ .+...|++|+.+|..|+.|+|.+++.+.+|.+..+ ++..+
T Consensus 329 ~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~----~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~ 400 (543)
T PLN02991 329 SGPRPNPQGSYHYGKINITRTIRLANS----AGNI----EGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQP 400 (543)
T ss_pred CCCCCCCCccccccccccceeEEEeec----cccc----CceEEEEECCCccCCCCCChhhhhhhcccCccccccccccC
Confidence 2222223222211111111100 0000 0011 23568999999999999999988887777877654 44443
Q ss_pred ccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCC-CCCCCCC
Q 039250 425 LKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQ-TANFNLI 503 (571)
Q Consensus 425 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~ 503 (571)
|.. .....+.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ...||+.
T Consensus 401 ~~~---------------~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~ 462 (543)
T PLN02991 401 TNG---------------AIFPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAASRKVYNLN 462 (543)
T ss_pred CCC---------------ccccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcccccccCCC
Confidence 320 0122456788999999999999964 36899999999999999999999865 4568999
Q ss_pred CCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 504 DPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 504 ~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
||++|||+.||++||++|||++||||.|+|||||..|+..||..++.|.++.+..+++++||.++++|
T Consensus 463 nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 463 DAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred CCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999899999999999999
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=5.2e-102 Score=832.69 Aligned_cols=522 Identities=25% Similarity=0.423 Sum_probs=409.8
Q ss_pred chhhhHHHHHHHHHhhhccccccccCCCcceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCC
Q 039250 3 SFTTSLMLWLCLLFCVHTVHVMATWPRGRSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQS 82 (571)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l 82 (571)
|..+||+.++||+..++.+ ... .+++++|+|+|++..+++||.++++++|||++|||+|++++||+|+|+|+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l 76 (552)
T PLN02354 2 MGGRLLAVLLCLAAAVALV-VRA----EDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNL 76 (552)
T ss_pred chHHHHHHHHHHHHHHHHh-hhc----cccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECC
Confidence 5566777777776655322 111 24689999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCC
Q 039250 83 PYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQ 161 (571)
Q Consensus 83 ~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~ 161 (571)
+++++|||||++|..++||||+++ |||+|+||++|+|+|++.+++||||||||...|++ ||+|+|||++++..+.+++
T Consensus 77 ~~~ttiHWHGi~q~~~~~~DGv~~-TQcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~ 155 (552)
T PLN02354 77 DEPFLLTWSGIQQRKNSWQDGVPG-TNCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYA 155 (552)
T ss_pred CCCcccccccccCCCCcccCCCcC-CcCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCC
Confidence 999999999999999999999999 99999999999999998668999999999998875 9999999999876666676
Q ss_pred CCCccEEEEEeeEeeccHHHHHHHHhhCCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEE
Q 039250 162 FPYQEHIIILGEYWLQDVVQLERQVLASGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENF 241 (571)
Q Consensus 162 ~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~ 241 (571)
.+++|++++++||+++....+.. ....+.....++.++|||+.+..+ +...+.+++++||+|||||||+|....+.
T Consensus 156 ~~d~e~~l~l~Dw~~~~~~~~~~-~~~~g~~~~~~d~~liNG~~~~~~---~~~~~~~~v~~Gk~yRlRiINa~~~~~~~ 231 (552)
T PLN02354 156 DPEDDYTVLIGDWYTKSHTALKK-FLDSGRTLGRPDGVLINGKSGKGD---GKDEPLFTMKPGKTYRYRICNVGLKSSLN 231 (552)
T ss_pred CcCceEEEEeeeeccCCHHHHHH-HHhcCCCCCCCCeEEEeCCcCCCC---CCCceEEEECCCCEEEEEEEecCCCceEE
Confidence 67899999999999988666443 334444445689999999965322 12458899999999999999999999999
Q ss_pred EEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCC
Q 039250 242 FAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS 321 (571)
Q Consensus 242 ~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~ 321 (571)
|+|+||+|+|||+||.+++|..+++|.|++||||||+|++++++|+|+|++.....+ ......|+|+|+++....
T Consensus 232 f~IdgH~~tVIa~DG~~v~p~~~~~l~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~ 306 (552)
T PLN02354 232 FRIQGHKMKLVEMEGSHVLQNDYDSLDVHVGQCFSVLVTANQAPKDYYMVASTRFLK-----KVLTTTGIIRYEGGKGPA 306 (552)
T ss_pred EEECCceEEEEEeCCcccCCcceeEEEEccCceEEEEEECCCCCCcEEEEEeccccC-----CCccEEEEEEECCCCCCC
Confidence 999999999999999999999999999999999999999998889999998742222 124578999998864322
Q ss_pred -CCCCCCCCC-CC-CccchhhhcccCccCCCCCCCc--------cCceEEEEEEeccccccCCCCCCCcccCCCCceeEE
Q 039250 322 -LALPATLPR-FN-DNLAVKTVMDGLRSLNPVPVPK--------EIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAA 390 (571)
Q Consensus 322 -~~~p~~~p~-~~-~~~~~~~~~~~l~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (571)
+..| ..+. .. .......+..++.+......+. ..++.+.+..+.. . ..+...|
T Consensus 307 ~~~~p-~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~g~~~~ 370 (552)
T PLN02354 307 SPELP-EAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-----------K----VDGKLRY 370 (552)
T ss_pred CCCCC-CCCcccccchhhhhhhhhcccccccCCCCCCccccccccccceEEEecccc-----------c----CCceEEE
Confidence 1122 1111 00 0000011111222211111111 1122222221110 0 1235689
Q ss_pred eecceeecCCChhHHhhhhhcc-CcccccC-CCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCC
Q 039250 391 SMNNISFIKPNVSVLEAYYKKI-DGIFTED-FPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTAT 468 (571)
Q Consensus 391 ~in~~~~~~p~~~ll~~~~~~~-~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~ 468 (571)
.+||.+|..|+.|+|.+.+.++ .|.++.+ ++..+|..++ ....++.++.++.|++|||+|+|..
T Consensus 371 ~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~-------------~~~~~~~v~~~~~~~~VeiVi~n~~- 436 (552)
T PLN02354 371 ALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKIT-------------KIKIQPNVLNITFRTFVEIIFENHE- 436 (552)
T ss_pred EECCccCCCCCCChHHhhhhcccCCccccCccccCCccccC-------------ccccCCeeEEcCCCCEEEEEEeCCC-
Confidence 9999999999999988876544 3555433 2334443211 0233557889999999999999964
Q ss_pred CCCCCCCeeecCceEEEEEeccCCCCCC-CCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEE
Q 039250 469 VTTENHPIHLHGYNFYVVGYGTGNYDPQ-TANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGT 547 (571)
Q Consensus 469 ~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~ 547 (571)
...||||||||+||||++|.|.|++. ...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||..
T Consensus 437 --~~~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l 514 (552)
T PLN02354 437 --KSMQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQL 514 (552)
T ss_pred --CCCCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceE
Confidence 36899999999999999999999864 457899999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 548 VLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 548 ~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
.|.|.++.+..++++++|.+.+.|
T Consensus 515 ~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 515 YASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred EEEEeCCccccCcCCCCCcccccc
Confidence 999998887788888899999999
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=6.7e-102 Score=827.90 Aligned_cols=502 Identities=25% Similarity=0.409 Sum_probs=404.8
Q ss_pred CcceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCcccc
Q 039250 30 GRSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQ 109 (571)
Q Consensus 30 ~~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q 109 (571)
+.++++|+|+|++...++||+++.+++|||++|||+|++++||+|+|+|+|+++++++|||||++|++++||||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred CcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhh
Q 039250 110 CPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLA 188 (571)
Q Consensus 110 ~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (571)
|+|+||++|+|+|++++++||||||+|...+++ ||+|+|||.++++.+.+++.+++|++++++||++.....+.. ...
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-ILD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-Hhh
Confidence 999999999999999668999999999998875 999999998866555666678899999999999988665433 333
Q ss_pred CCCC-CCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceE
Q 039250 189 SGGA-PPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRV 267 (571)
Q Consensus 189 ~g~~-~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l 267 (571)
.+.. +..+|.++|||+.. . ..+.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|
T Consensus 171 ~g~~~~~~~d~~liNG~~~-~------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGV-S------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEeccCC-C------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 4433 34789999999942 1 23789999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCCCCCCCCCCCCCccchhhhcccCccC
Q 039250 268 MLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSL 347 (571)
Q Consensus 268 ~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~~~~~~l~~l 347 (571)
.|+|||||||+|++++++|+|+|++.....+. .....|||+|.++....+..| ..|.+++......+...++..
T Consensus 244 ~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~-----~~~~~ail~Y~g~~~~~~~~p-~~p~~~~~~~~~~~~~~~~~~ 317 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA-----KVLVSSTLHYSNSKGHKIIHA-RQPDPDDLEWSIKQAQSIRTN 317 (536)
T ss_pred EEccCceEEEEEEcCCCCceEEEEEEeccCCC-----CCceEEEEEECCCCCCCCCCC-CCCCcCCccccccchhhhhhc
Confidence 99999999999999988899999998643221 235789999998654322223 344444433322221112211
Q ss_pred -C---CCCCCccCceEEEEEEeccc-cccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccC-CC
Q 039250 348 -N---PVPVPKEIDANLFVTIGLNV-QKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTED-FP 421 (571)
Q Consensus 348 -~---p~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~-~~ 421 (571)
. +...|+..++...+.++... ..+. ... .++...|++||.+|..|+.|+|.+++.++.|.+..+ ++
T Consensus 318 l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~ 389 (536)
T PLN02792 318 LTASGPRTNPQGSYHYGKMKISRTLILESS----AAL----VKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIP 389 (536)
T ss_pred cCCCCCCCCCCcccccceeccceeEEeccc----ccc----cCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCc
Confidence 1 22233322222112211110 0000 001 123568999999999999999998877777877653 66
Q ss_pred CCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCC-CCCC
Q 039250 422 EAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQ-TANF 500 (571)
Q Consensus 422 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~ 500 (571)
..||..++ ...++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. ...|
T Consensus 390 ~~p~~~~~--------------~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~ 452 (536)
T PLN02792 390 DKPRRGGG--------------MRLDTSVMGAHHNAFLEIIFQNRE---KIVQSYHLDGYNFWVVGINKGIWSRASRREY 452 (536)
T ss_pred cCCcccCC--------------CccCceEEEcCCCCEEEEEEECCC---CCCCCeeeCCCceEEEeecCCCCCccccccc
Confidence 66553211 123567889999999999999954 36899999999999999999999864 4578
Q ss_pred CCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 501 NLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 501 ~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
|+.||++||||.||++||++|||++||||.|+||||+..|+..||+.+|.|.++.+..+++++||.++++|
T Consensus 453 Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 453 NLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=1e-101 Score=829.59 Aligned_cols=491 Identities=26% Similarity=0.446 Sum_probs=393.0
Q ss_pred CcceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCcccc
Q 039250 30 GRSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQ 109 (571)
Q Consensus 30 ~~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q 109 (571)
.+++++|+|+|++..+++||+++++|+|||++|||+||+++||+|+|+|+|+++++|+|||||+++..++||||+++ +|
T Consensus 26 ~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~-tQ 104 (539)
T PLN02835 26 EDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLG-TN 104 (539)
T ss_pred cCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCcc-Cc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhh
Q 039250 110 CPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLA 188 (571)
Q Consensus 110 ~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (571)
|+|+||++|+|+|++++++||||||||...+++ ||+|+|||++++..+.+++.+|+|++++++||+++....+... ..
T Consensus 105 ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~-~~ 183 (539)
T PLN02835 105 CPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQR-LD 183 (539)
T ss_pred CCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHH-hh
Confidence 999999999999998678999999999988875 9999999987655555666789999999999999987665433 33
Q ss_pred CCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEE
Q 039250 189 SGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVM 268 (571)
Q Consensus 189 ~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~ 268 (571)
.|.....++.++|||+.. +.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.
T Consensus 184 ~g~~~~~~d~~liNG~~~----------~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~p~~~~~l~ 253 (539)
T PLN02835 184 SGKVLPFPDGVLINGQTQ----------STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTIQNIYDSLD 253 (539)
T ss_pred cCCCCCCCceEEEccccC----------ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCCCceeeEEE
Confidence 455556789999999943 6899999999999999999999999999999999999999999999999999
Q ss_pred eCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCC-CCCCCCCCCCC---CccchhhhcccC
Q 039250 269 LGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS-LALPATLPRFN---DNLAVKTVMDGL 344 (571)
Q Consensus 269 l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~~~---~~~~~~~~~~~l 344 (571)
|++||||||+|++++++|+|+|++.....+ ......|+|+|+++.... +.+| ..|... +..........+
T Consensus 254 i~~GqRydvlv~~~~~~g~y~i~a~~~~~~-----~~~~~~ail~Y~~~~~~~~~~~p-~~p~~~~~~~~~~~~~~~~~l 327 (539)
T PLN02835 254 VHVGQSVAVLVTLNQSPKDYYIVASTRFTR-----QILTATAVLHYSNSRTPASGPLP-ALPSGELHWSMRQARTYRWNL 327 (539)
T ss_pred ECcCceEEEEEEcCCCCCcEEEEEEccccC-----CCcceEEEEEECCCCCCCCCCCC-CCCccccccccchhhcccccc
Confidence 999999999999998889999998642222 123578999998864321 1223 222110 000001110112
Q ss_pred ccCCCCCCCc--------cCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCccc
Q 039250 345 RSLNPVPVPK--------EIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIF 416 (571)
Q Consensus 345 ~~l~p~~~p~--------~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~ 416 (571)
.+......+. ..++++.+..... . ..+...|.+|+.+|..|+.|+|.+++.+..|.+
T Consensus 328 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~ 392 (539)
T PLN02835 328 TASAARPNPQGSFHYGKITPTKTIVLANSAP-----------L----INGKQRYAVNGVSYVNSDTPLKLADYFGIPGVF 392 (539)
T ss_pred CccccCCCCCccccccccCCCceEEEecccc-----------c----cCCeEEEEECCcccCCCCCChhhhhhhcCCCcc
Confidence 2111111111 1122222221110 0 123468999999999888888877766555655
Q ss_pred ccCC-CCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCC
Q 039250 417 TEDF-PEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDP 495 (571)
Q Consensus 417 ~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~ 495 (571)
+... +..++. .....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++
T Consensus 393 ~~~~~~~~~~~---------------~~~~~~t~~~~~~~~~~Veivi~N~~---~~~HP~HLHGh~F~Vlg~G~g~~~~ 454 (539)
T PLN02835 393 SVNSIQSLPSG---------------GPAFVATSVMQTSLHDFLEVVFQNNE---KTMQSWHLDGYDFWVVGYGSGQWTP 454 (539)
T ss_pred ccCccccCCCC---------------CccccCCeEEEcCCCCEEEEEEECCC---CCCCCCCCCCccEEEEeccCCCCCc
Confidence 4331 111111 01234568889999999999999964 3689999999999999999998875
Q ss_pred C-CCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 496 Q-TANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 496 ~-~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
. ...+|+.+|++|||+.||++||++|||+|||||.|+|||||++|+..||+.+|+|+++.+..++++++|.++++|
T Consensus 455 ~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 455 AKRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLC 531 (539)
T ss_pred ccccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccc
Confidence 4 345788999999999999999999999999999999999999999999999999999998889999999999999
No 7
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.4e-100 Score=816.11 Aligned_cols=499 Identities=25% Similarity=0.438 Sum_probs=389.6
Q ss_pred cceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccC
Q 039250 31 RSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQC 110 (571)
Q Consensus 31 ~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~ 110 (571)
+++++|+|+|++...++||+++++++|||++|||+|++++||+|+|+|+|+|+++|+|||||+++.+++||||+++ +||
T Consensus 24 a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~g-tQc 102 (545)
T PLN02168 24 APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRG-TNC 102 (545)
T ss_pred ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCC-CcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred cCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhC
Q 039250 111 PIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLAS 189 (571)
Q Consensus 111 ~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~ 189 (571)
+|+||++|+|+|++++++||||||||.+.|++ ||+|+|||+++++.+.+++.+++|+.++++||++.+...+.. ....
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~~~ 181 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRA-SLDN 181 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHh-hhhc
Confidence 99999999999999668999999999998865 999999999987766676678899999999999987554432 2233
Q ss_pred CCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEe
Q 039250 190 GGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVML 269 (571)
Q Consensus 190 g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l 269 (571)
+.....+|.++|||+.. ..+.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+++|.|
T Consensus 182 g~~~~~~d~~liNG~~~--------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~l~i 253 (545)
T PLN02168 182 GHSLPNPDGILFNGRGP--------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSSLDI 253 (545)
T ss_pred CCCCCCCCEEEEeccCC--------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeEEEE
Confidence 43445789999999942 2378999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCC-c---eeEEEeecccccCCCccCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCccchhhhcccC
Q 039250 270 GPGQTVNVLVTADQPI-G---KYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS-LALPATLPRFNDNLAVKTVMDGL 344 (571)
Q Consensus 270 ~pgeR~dv~v~~~~~~-g---~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~~~~~~~~~~~~~~l 344 (571)
++||||||+|++++++ | +|||++.....+. .....|+|+|+++.... .+.| ..|...+..+......++
T Consensus 254 ~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~-----~~~~~ail~Y~~~~~~~~~p~p-~~p~~~~~~~~~~~~~~~ 327 (545)
T PLN02168 254 HVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA-----YLGGVALIRYPNSPLDPVGPLP-LAPALHDYFSSVEQALSI 327 (545)
T ss_pred cCCceEEEEEEcCCCCCCCcceEEEEEEecccCC-----CcceEEEEEECCCCCCCCCCCC-CCCcccccccccchhhhh
Confidence 9999999999998654 4 8999998643221 24578999998864431 1223 233333332222221112
Q ss_pred c-cCCC---CCCCccCceEEEEEEecccc-ccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccC
Q 039250 345 R-SLNP---VPVPKEIDANLFVTIGLNVQ-KCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTED 419 (571)
Q Consensus 345 ~-~l~p---~~~p~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~ 419 (571)
+ .+.| ...|...+....+.+..... .+. ... .++...|++||.+|..|+.|+|.+++.++.+.+..+
T Consensus 328 ~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~----~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~ 399 (545)
T PLN02168 328 RMDLNVGAARSNPQGSYHYGRINVTRTIILHND----VML----SSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPG 399 (545)
T ss_pred hhcCCCCCCCCCCcccccccccccceeEEeccc----ccc----cCceEEEEECCCccCCCCCchhhhhhcccccccccC
Confidence 1 1222 11221111110001000000 000 000 123568999999999999888877665543433332
Q ss_pred -CCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCC-C
Q 039250 420 -FPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQ-T 497 (571)
Q Consensus 420 -~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~ 497 (571)
++..+|. .....++.++.++.|++|||+|+|.. ...||||||||+||||++|.|.|++. .
T Consensus 400 ~~~~~p~~---------------~~~~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~g~g~~~~~~~ 461 (545)
T PLN02168 400 MFPVYPSN---------------KTPTLGTSVVDIHYKDFYHIVFQNPL---FSLESYHIDGYNFFVVGYGFGAWSESKK 461 (545)
T ss_pred CCccCCCc---------------CccccCceEEEecCCCEEEEEEeCCC---CCCCCeeeCCCceEEEECCCCCCCcccc
Confidence 3333331 00122467889999999999999964 36899999999999999999999864 3
Q ss_pred CCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCC------CCCcCCCCCCCCCCC
Q 039250 498 ANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKG------ELETLPHPPADFPRC 571 (571)
Q Consensus 498 ~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~------~~~~~~~~p~~~~~c 571 (571)
..+|+.||++|||+.||++||++|||+|||||.|+|||||.+|.+.||.+.++|.++.. ..++++++|..+++|
T Consensus 462 ~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 462 AGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred ccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccc
Confidence 46899999999999999999999999999999999999999999999999998864443 256788999999999
No 8
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.3e-99 Score=800.31 Aligned_cols=517 Identities=47% Similarity=0.846 Sum_probs=455.2
Q ss_pred CcceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCcccc
Q 039250 30 GRSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQ 109 (571)
Q Consensus 30 ~~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q 109 (571)
.+.++.|+|++++..+.++|.++.++++||++|||+|+|++||+|+|+|.|+++++++|||||+++...+|+|| +.+||
T Consensus 25 ~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~kn~w~DG-~~~Tq 103 (563)
T KOG1263|consen 25 EAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQRKNPWQDG-VYITQ 103 (563)
T ss_pred cCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEeccccccCCccccC-Ccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeec-cHHHHHHHHh
Q 039250 110 CPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQ-DVVQLERQVL 187 (571)
Q Consensus 110 ~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~-~~~~~~~~~~ 187 (571)
|||+||++|+|+|+++++.||||||+|...+|+ |++|+|||+++...+.|++.+|+|++|+++||+.+ ....+...+.
T Consensus 104 CPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~ 183 (563)
T KOG1263|consen 104 CPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLD 183 (563)
T ss_pred CCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhc
Confidence 999999999999999889999999999999997 89999999999988889989999999999999995 7777766666
Q ss_pred hCCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceE
Q 039250 188 ASGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRV 267 (571)
Q Consensus 188 ~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l 267 (571)
..+..+..+|..+|||+.|..|+| .+.++|++||+|||||+|+|....+.|+|+||+|+||++||.+++|..+++|
T Consensus 184 ~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~~p~~~~~l 259 (563)
T KOG1263|consen 184 RTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYTKPFTTDSL 259 (563)
T ss_pred cCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEEeeeeeceE
Confidence 666666669999999999888888 6999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCC----CCCCCCCCCCCccchhhhccc
Q 039250 268 MLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSL----ALPATLPRFNDNLAVKTVMDG 343 (571)
Q Consensus 268 ~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~----~~p~~~p~~~~~~~~~~~~~~ 343 (571)
.|.||||+||++++++.+++|+|.+..+..+....+ .....++++|.++..... ..+ .+|..++...+..+...
T Consensus 260 ~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~-~~~~~~~~~~s~~~~~~ 337 (563)
T KOG1263|consen 260 DIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYP-FLPPGNDTAWSTYQARS 337 (563)
T ss_pred EEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccc-cCCcccCchhhhhhhhc
Confidence 999999999999999999999999998766543223 467889999998432211 112 34555566666666666
Q ss_pred CccCC----CCCCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCCh-hHHhhhhhccCccccc
Q 039250 344 LRSLN----PVPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNV-SVLEAYYKKIDGIFTE 418 (571)
Q Consensus 344 l~~l~----p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~-~ll~~~~~~~~g~~~~ 418 (571)
++.+. +...|+..++...+++..+...|... ...+++..+++|+.+|..|+. .++.+++.++.|.+..
T Consensus 338 ~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~ 410 (563)
T KOG1263|consen 338 IRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSD-------NKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTN 410 (563)
T ss_pred ccccccccCcccCCCccccccceeeeccEEeccCC-------CCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccC
Confidence 66653 56678888888777777766554320 024567889999999999987 4666777777888888
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCC--C
Q 039250 419 DFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDP--Q 496 (571)
Q Consensus 419 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~--~ 496 (571)
+++..||..+++++ .+.++.++.++.++.||++++|.+......||||||||+|||++.|.|.|++ .
T Consensus 411 d~p~~P~~~~~~~~-----------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d 479 (563)
T KOG1263|consen 411 DFPDKPPIKFDYTG-----------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKD 479 (563)
T ss_pred ccCCCCccccCCcc-----------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcC
Confidence 89999988777665 2568899999999999999999876566789999999999999999999998 4
Q ss_pred C-CCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 497 T-ANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 497 ~-~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
+ ..||+.+|+.||||.||||||++|||.|||||.|+||||+.+|...||.++|+|.++.+..+++.++|.+.++|
T Consensus 480 ~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~c 555 (563)
T KOG1263|consen 480 PRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKC 555 (563)
T ss_pred hhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccc
Confidence 4 67899999999999999999999999999999999999999999999999999999999999999999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=4.2e-96 Score=792.78 Aligned_cols=526 Identities=31% Similarity=0.548 Sum_probs=391.2
Q ss_pred CcchhhhHHHHHHHHHhhhccccccccCCCcceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEe
Q 039250 1 MASFTTSLMLWLCLLFCVHTVHVMATWPRGRSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTN 80 (571)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N 80 (571)
|+|++-|.+..+.+|--. . .+++++|+|+|++..+++||+++.+++|||++|||+||+++||+|+|+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N 70 (574)
T PLN02191 1 MAMIVWWIVTVVAVLTHT---------A-SAAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTN 70 (574)
T ss_pred CcEeehhHHHHHHHHHHh---------h-ccceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEE
Confidence 677777776655443222 1 257899999999999999999999999999999999999999999999999
Q ss_pred CCC-CCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCC
Q 039250 81 QSP-YNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPY 158 (571)
Q Consensus 81 ~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~ 158 (571)
+++ ++++|||||+++.+++|+||+++++||+|+||++|+|+|++ .++||||||||...+++ ||+|+|||+++.+...
T Consensus 71 ~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~ 149 (574)
T PLN02191 71 KLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKE 149 (574)
T ss_pred CCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCC
Confidence 987 78999999999999999999999999999999999999999 79999999999988865 9999999997654433
Q ss_pred CCCCCCccEEEEEeeEeeccHHHHHHHHhhCC-CCCCCCCcEEEcCccCCCCCCC-------------------CC-Cee
Q 039250 159 PFQFPYQEHIIILGEYWLQDVVQLERQVLASG-GAPPPSNAYTINGHPGPNYNCS-------------------AN-DVY 217 (571)
Q Consensus 159 ~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~iNG~~~~~~~~~-------------------~~-~~p 217 (571)
++ .+|+|++|+++||++.............. .....++.++|||+ ++ +.|. +. ...
T Consensus 150 ~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~n~~~~p~ 226 (574)
T PLN02191 150 RL-RYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGR-GQ-FNCSLAAQFSNGTELPMCTFKEGDQCAPQ 226 (574)
T ss_pred CC-CCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCC-CC-CCCcccccccCCcccccceeccCCCCCce
Confidence 33 47899999999999986543322221111 11246789999998 53 3332 11 223
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCC-ceeEEEeeccc
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPI-GKYSMAMGPYM 296 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~ 296 (571)
.++|++||+|||||||+|+...+.|+|+||+|+|||+||.+++|+.+++|.|++||||||+|++++++ ++|||++....
T Consensus 227 ~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~ 306 (574)
T PLN02191 227 TLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRG 306 (574)
T ss_pred EEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999876 58999997643
Q ss_pred ccCCCccCCcceEEEEEEcCCCCCC-CC--CCCCCCCCCCccchhhhcccCccC-CCCCCCcc-CceEEEEEEecccccc
Q 039250 297 SAQGVSFQNISAIAYFQYLGAQPNS-LA--LPATLPRFNDNLAVKTVMDGLRSL-NPVPVPKE-IDANLFVTIGLNVQKC 371 (571)
Q Consensus 297 ~~~~~~~~~~~~~ail~y~~~~~~~-~~--~p~~~p~~~~~~~~~~~~~~l~~l-~p~~~p~~-~d~~~~~~~~~~~~~~ 371 (571)
.+. ......|+|+|.+..... +. .| ..|.+.+..........+... .....|.. .+..+.+... ..
T Consensus 307 ~~~----~~~~~~ail~Y~~~~~~~~p~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~-- 377 (574)
T PLN02191 307 RKP----NTTQALTILNYVTAPASKLPSSPPP-VTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQ--NL-- 377 (574)
T ss_pred cCC----CCCCceEEEEECCCCCCCCCCCCCC-CCCcccccchhhcccccccccccCCCCCCcccceEEEeccc--ce--
Confidence 331 112346999998765432 11 11 123333222111111111110 00111211 2333322211 00
Q ss_pred CCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCC-ccccccCCCCCCCCCCCCCCCCCceE
Q 039250 372 RSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAP-LKFYDFVNGAPNNIPNDTNSMNGTRT 450 (571)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (571)
..+...|.+|+.+|..|+.|+|.+.+.+..+.+..+.+... +..|+..+... ......++.+
T Consensus 378 ------------~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v 440 (574)
T PLN02191 378 ------------IDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPP-----FPNTTTGNGI 440 (574)
T ss_pred ------------eCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCc-----ccccccccee
Confidence 11234799999999988888888776555554443332211 11222111100 0012345678
Q ss_pred EEeeCCCEEEEEEeeCCCC---CCCCCCeeecCceEEEEEeccCCCCCC--CCCCCCCCCCcceeEEeCCCcEEEEEEEe
Q 039250 451 KVLEFGTRVQIILQDTATV---TTENHPIHLHGYNFYVVGYGTGNYDPQ--TANFNLIDPPYMNTIGVPVGGWAAIRFTA 525 (571)
Q Consensus 451 ~~~~~g~~v~~~l~N~~~~---~~~~HP~HlHG~~F~Vl~~~~g~~~~~--~~~~~~~~p~~rDTv~vpp~g~~~irf~a 525 (571)
+.++.|++|||+|+|.... ....||||||||+||||++|.|.|+++ ...+|+.||++|||+.||++||++|||++
T Consensus 441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~a 520 (574)
T PLN02191 441 YVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVT 520 (574)
T ss_pred EEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEEC
Confidence 8999999999999996411 257899999999999999999999863 24688999999999999999999999999
Q ss_pred cCceeeEEeeechhhhhcccEEEEEEeCCCCCCCcCCCCCCCCCCC
Q 039250 526 DNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELETLPHPPADFPRC 571 (571)
Q Consensus 526 dnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 571 (571)
||||.|+|||||+||+..||+++|... .++++.+|..+++|
T Consensus 521 DNPG~Wl~HCHi~~Hl~~Gm~~~~~e~-----~~~~~~~p~~~~~C 561 (574)
T PLN02191 521 DNPGVWFFHCHIEPHLHMGMGVVFAEG-----LNRIGKIPDEALGC 561 (574)
T ss_pred CCCEEEEEecCchhhhhcCCEEEEecC-----hhhccCCCcchhhh
Confidence 999999999999999999999999542 23456678888988
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=2e-94 Score=781.74 Aligned_cols=510 Identities=34% Similarity=0.584 Sum_probs=387.7
Q ss_pred cceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCC-CCCeeEEecccccCCCCCCCCCCcccc
Q 039250 31 RSTRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQS-PYNATIHWHGVRQRLSCWFDGPAYITQ 109 (571)
Q Consensus 31 ~~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~~q 109 (571)
+++++|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+++|+||+++++|
T Consensus 22 ~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~tq 101 (566)
T PLN02604 22 ARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVTQ 101 (566)
T ss_pred CcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCcccc
Confidence 6799999999999999999999999999999999999999999999999997 589999999999999999999999999
Q ss_pred CcCCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhh
Q 039250 110 CPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLA 188 (571)
Q Consensus 110 ~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 188 (571)
|+|+||++++|+|++ +++||||||||...+++ ||+|+|||+++++...++ .+|+|.+|+++||++....+.......
T Consensus 102 ~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~~ 179 (566)
T PLN02604 102 CPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLSS 179 (566)
T ss_pred CccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhcc
Confidence 999999999999999 89999999999987764 999999999887655555 478899999999999887665443322
Q ss_pred CC-CCCCCCCcEEEcCccCCCCCCC----------------C-CCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeE
Q 039250 189 SG-GAPPPSNAYTINGHPGPNYNCS----------------A-NDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLT 250 (571)
Q Consensus 189 ~g-~~~~~~~~~~iNG~~~~~~~~~----------------~-~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 250 (571)
.. ....+++..+|||+ |+ +.|. + ...+.+++++|++|||||||+|....+.|+|+||+|+
T Consensus 180 ~~~~~~~~~d~~liNG~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~ 257 (566)
T PLN02604 180 IPFDWVGEPQSLLIQGK-GR-YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMT 257 (566)
T ss_pred CCCccCCCCCceEEcCC-CC-CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEE
Confidence 11 11246789999998 53 3332 1 1345899999999999999999999999999999999
Q ss_pred EEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCc-eeEEEeecccccCCCccCCcceEEEEEEcCCCCCCC--CCCCC
Q 039250 251 IVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIG-KYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSL--ALPAT 327 (571)
Q Consensus 251 via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g-~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~--~~p~~ 327 (571)
|||+||.+++|+.++.|.|++||||||+|++++++| +|||++.....+. +.....|||+|++...... ..+..
T Consensus 258 VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~----~~~~~~aIL~Y~~~~~~~~~~~~~~~ 333 (566)
T PLN02604 258 VVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN----TTPPGLAIFNYYPNHPRRSPPTVPPS 333 (566)
T ss_pred EEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC----CCcceeEEEEECCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999998765 8999987643331 1245789999986432110 11101
Q ss_pred CCCCCCccchhhhcccCccCCC--CCCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHH
Q 039250 328 LPRFNDNLAVKTVMDGLRSLNP--VPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVL 405 (571)
Q Consensus 328 ~p~~~~~~~~~~~~~~l~~l~p--~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll 405 (571)
.+.+++..........+..+.+ ...+...++++.+....+. .++...|.+|+.+|..|+.|+|
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---------------~~~~~~w~in~~~~~~p~~p~L 398 (566)
T PLN02604 334 GPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNE---------------VNGYRRWSVNNVSFNLPHTPYL 398 (566)
T ss_pred CCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccc---------------cCCeEEEEECcccCCCCCCchh
Confidence 1222221111111111111111 1123345555554322211 1234689999999998888888
Q ss_pred hhhhhccCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCC---CCCCCCeeecCce
Q 039250 406 EAYYKKIDGIFTEDFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATV---TTENHPIHLHGYN 482 (571)
Q Consensus 406 ~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP~HlHG~~ 482 (571)
.+.+.+..|.++.+. ++..+++..-......-+.....+..++.++.|++||++|+|.... ....||||||||+
T Consensus 399 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~ 475 (566)
T PLN02604 399 IALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHD 475 (566)
T ss_pred HhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCc
Confidence 777665555554221 1211111100000000001123355778999999999999996421 2468999999999
Q ss_pred EEEEEeccCCCCCC--CCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCCc
Q 039250 483 FYVVGYGTGNYDPQ--TANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELET 560 (571)
Q Consensus 483 F~Vl~~~~g~~~~~--~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~ 560 (571)
||||++|.|.|++. ...+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. .++
T Consensus 476 F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~-----~~~ 550 (566)
T PLN02604 476 FWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG-----IER 550 (566)
T ss_pred eEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC-----hhh
Confidence 99999999998754 34688999999999999999999999999999999999999999999999999764 346
Q ss_pred CCCCCCCCCCC
Q 039250 561 LPHPPADFPRC 571 (571)
Q Consensus 561 ~~~~p~~~~~c 571 (571)
++.+|..+++|
T Consensus 551 ~~~~p~~~~~C 561 (566)
T PLN02604 551 VGKLPSSIMGC 561 (566)
T ss_pred ccCCCCCcCcc
Confidence 77889999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1e-94 Score=782.11 Aligned_cols=505 Identities=32% Similarity=0.589 Sum_probs=384.9
Q ss_pred eEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCC-CCeeEEecccccCCCCCCCCCCccccCc
Q 039250 33 TRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSP-YNATIHWHGVRQRLSCWFDGPAYITQCP 111 (571)
Q Consensus 33 ~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~ 111 (571)
+|+|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+++||||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999975 8999999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCcceeEeeccccccc-ceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhCC
Q 039250 112 IQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLASG 190 (571)
Q Consensus 112 i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 190 (571)
|+||++++|+|++ .++||||||||...+++ ||+|+|||+++.+...++ .+|+|++|+++||+++...+.........
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 79999999999988765 999999999886544555 47899999999999988755443322211
Q ss_pred -CCCCCCCcEEEcCccCCCCCCCC------------------C-CeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeE
Q 039250 191 -GAPPPSNAYTINGHPGPNYNCSA------------------N-DVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLT 250 (571)
Q Consensus 191 -~~~~~~~~~~iNG~~~~~~~~~~------------------~-~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~ 250 (571)
.....++.++|||+ ++ +.|.. . ....++|++|++|||||||+|....+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGR-GQ-FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCC-CC-CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 11245789999998 43 23321 1 224589999999999999999999999999999999
Q ss_pred EEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCC-ceeEEEeecccccCCCccCCcceEEEEEEcCCCCCC-C--CCCC
Q 039250 251 IVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPI-GKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNS-L--ALPA 326 (571)
Q Consensus 251 via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~-g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~--~~p~ 326 (571)
|||+||.+++|+.++.|.|+|||||||+|++++++ |+|||++.....+. ......|+|+|.+..... + +.|
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~----~~~~~~aiL~Y~~~~~~~~p~~~~~- 311 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP----NTPPGLTVLNYYPNSPSRLPPTPPP- 311 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC----CCccEEEEEEECCCCCCCCCCCCCC-
Confidence 99999999999999999999999999999999866 58999987644321 123468999998754322 1 112
Q ss_pred CCCCCCCccchhhhcccCccC-CCCCCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHH
Q 039250 327 TLPRFNDNLAVKTVMDGLRSL-NPVPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVL 405 (571)
Q Consensus 327 ~~p~~~~~~~~~~~~~~l~~l-~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll 405 (571)
..|.+.+..........+... .....+..+++++.+...... .++...|.+|+.+|..|..|+|
T Consensus 312 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~n~~s~~~p~~p~l 376 (541)
T TIGR03388 312 VTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNK---------------INGYTKWAINNVSLTLPHTPYL 376 (541)
T ss_pred CCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcc---------------cCceEEEEECcccCCCCCccHH
Confidence 233333321111111111111 111223455666554332211 1223579999999988888888
Q ss_pred hhhhhccCcccccCCC-CCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCC---CCCCCCeeecCc
Q 039250 406 EAYYKKIDGIFTEDFP-EAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATV---TTENHPIHLHGY 481 (571)
Q Consensus 406 ~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~---~~~~HP~HlHG~ 481 (571)
.+.+.+..+.+..+.+ ...+..|+...... +...+.++.++.++.|++||++|+|.... ....||||||||
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh 451 (541)
T TIGR03388 377 GSLKYNLLNAFDQKPPPENYPRDYDIFKPPP-----NPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGH 451 (541)
T ss_pred HHHhhcCCccccCCCCcccccccccccCCCc-----ccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCC
Confidence 7766544333322111 11111121111000 11134466788999999999999996421 246899999999
Q ss_pred eEEEEEeccCCCCCC--CCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCC
Q 039250 482 NFYVVGYGTGNYDPQ--TANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELE 559 (571)
Q Consensus 482 ~F~Vl~~~~g~~~~~--~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~ 559 (571)
+||||++|.|.|+.+ ...+|+.+|++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. .+
T Consensus 452 ~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~-----~~ 526 (541)
T TIGR03388 452 DFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG-----VE 526 (541)
T ss_pred ceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc-----cc
Confidence 999999999998753 34688999999999999999999999999999999999999999999999999754 24
Q ss_pred cCCCCCCCCCCC
Q 039250 560 TLPHPPADFPRC 571 (571)
Q Consensus 560 ~~~~~p~~~~~c 571 (571)
+++.+|..+++|
T Consensus 527 ~~~~~P~~~~~C 538 (541)
T TIGR03388 527 KVGKLPKEALGC 538 (541)
T ss_pred ccCCCCccccCC
Confidence 577889999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=7.9e-92 Score=757.21 Aligned_cols=484 Identities=29% Similarity=0.468 Sum_probs=371.0
Q ss_pred EEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCC-CCeeEEecccccCCCCCCCCCCccccCcC
Q 039250 34 RFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSP-YNATIHWHGVRQRLSCWFDGPAYITQCPI 112 (571)
Q Consensus 34 ~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~q~~i 112 (571)
-.|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+ ++++|||||+++..++||||+|++|||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 45999999999999999999999999999999999999999999999986 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCCcceeEeecccccccceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhCCC
Q 039250 113 QSGQTFTYEFTMF-QQKGTFFWHAHVSWLRGTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLASGG 191 (571)
Q Consensus 113 ~PG~~~~y~~~~~-~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 191 (571)
+||++|+|+|+++ +++||||||||...++.||+|+|||+++++.++ .+|+|++|+++||+++...++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~~---~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPPY---KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccCC---CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999984 589999999999988889999999998764332 468899999999999987776544332221
Q ss_pred -CCCCCCcEEEcCccCCCCC---CC---CCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCce-eEEEEeCCCCCCeeE
Q 039250 192 -APPPSNAYTINGHPGPNYN---CS---ANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHK-LTIVEADAEYTKPFS 263 (571)
Q Consensus 192 -~~~~~~~~~iNG~~~~~~~---~~---~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~-~~via~DG~~~~P~~ 263 (571)
....++.++|||+.+.... .+ ....+.++|++||+|||||||+|....+.|+|+||+ |+|||+||.+++|+.
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 1245689999999543210 01 123589999999999999999999999999999999 999999999999999
Q ss_pred eceEEeCCCceEEEEEEeCCC-------CceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCC-CCCCCCCCCCC-c
Q 039250 264 TDRVMLGPGQTVNVLVTADQP-------IGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSL-ALPATLPRFND-N 334 (571)
Q Consensus 264 ~d~l~l~pgeR~dv~v~~~~~-------~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~-~~p~~~p~~~~-~ 334 (571)
++.|.|++||||||+|+++++ +|+|||++.....+. .....|+|+|.+...... ..| ..+.... .
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~-----~~~~~aiL~Y~~~~~~~~~~~p-~~~~~~~~~ 319 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK-----VYRGYAVLRYRSDKASKLPSVP-ETPPLPLPN 319 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC-----cceEEEEEEeCCCCCCCCCCCC-CCCCCCccC
Confidence 999999999999999999975 489999987643321 235789999986543221 112 1111111 0
Q ss_pred cchhhhcccCccCCCC-----CCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecC--CChhHHhh
Q 039250 335 LAVKTVMDGLRSLNPV-----PVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIK--PNVSVLEA 407 (571)
Q Consensus 335 ~~~~~~~~~l~~l~p~-----~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~--p~~~ll~~ 407 (571)
.+.......+.++.+. ..+..+++++.+.+...... .++...|.+|+.+|.. |+.|+|..
T Consensus 320 ~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~-------------~~g~~~~~~N~~s~~~~~~~~P~L~~ 386 (538)
T TIGR03390 320 STYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP-------------LNGRVAWLQNGLSWTESVRQTPYLVD 386 (538)
T ss_pred cchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc-------------cCCeEEEEECCcccCCCCCCCchHHH
Confidence 1111111233444321 22345677766665542210 1235689999999985 66777766
Q ss_pred hhhccCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCC-----CCCCCCeeecCce
Q 039250 408 YYKKIDGIFTEDFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATV-----TTENHPIHLHGYN 482 (571)
Q Consensus 408 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~-----~~~~HP~HlHG~~ 482 (571)
.+.+. .+..++ |+.... ......++.++.++.|++|||+|+|.... ....||||||||+
T Consensus 387 ~~~~~-------~~~~~~--~~~~~~-------~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~ 450 (538)
T TIGR03390 387 IYENG-------LPATPN--YTAALA-------NYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRH 450 (538)
T ss_pred HhcCC-------CCcCCC--cccccc-------cCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCc
Confidence 54321 011110 110000 00112345678899999999999996311 2478999999999
Q ss_pred EEEEEeccCCCCCC--CCCCCCCCCCcceeEEeC----------CCcEEEEEEEecCceeeEEeeechhhhhcccEEEEE
Q 039250 483 FYVVGYGTGNYDPQ--TANFNLIDPPYMNTIGVP----------VGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLI 550 (571)
Q Consensus 483 F~Vl~~~~g~~~~~--~~~~~~~~p~~rDTv~vp----------p~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~ 550 (571)
||||++|.|.|++. ...+++.+|++|||+.|| +++|++|||++||||.|+|||||.||+..||+++|.
T Consensus 451 F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~ 530 (538)
T TIGR03390 451 FYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWV 530 (538)
T ss_pred EEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEE
Confidence 99999999999854 234678899999999996 889999999999999999999999999999999999
Q ss_pred EeCCC
Q 039250 551 VKNGK 555 (571)
Q Consensus 551 V~~~~ 555 (571)
|.+.+
T Consensus 531 ~~~~~ 535 (538)
T TIGR03390 531 FGDAE 535 (538)
T ss_pred eCChH
Confidence 97644
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=3e-77 Score=642.59 Aligned_cols=416 Identities=27% Similarity=0.416 Sum_probs=315.4
Q ss_pred ceEEEEEEEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCc
Q 039250 32 STRFYEFKIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCP 111 (571)
Q Consensus 32 ~~~~~~l~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~ 111 (571)
+.++|+|++++..++++|+.+.+|+|||++|||+||+++||+|+|+|+|+++++++|||||++++.. +||+|+++||+
T Consensus 44 ~~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~--~DGvP~vt~~~ 121 (587)
T TIGR01480 44 SGTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQ--MDGVPGVSFAG 121 (587)
T ss_pred CCceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCcc--ccCCCcccccc
Confidence 3589999999999999999999999999999999999999999999999999999999999998754 79999999999
Q ss_pred CCCCCeEEEEEEeCCCCcceeEeecccccc-cceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhh--
Q 039250 112 IQSGQTFTYEFTMFQQKGTFFWHAHVSWLR-GTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLA-- 188 (571)
Q Consensus 112 i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~-- 188 (571)
|+||++|+|+|++ .++||||||||...+. .||+|+|||+++++.+. .+|+|++|+|+||++....+++..+..
T Consensus 122 I~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~---~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~ 197 (587)
T TIGR01480 122 IAPGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPV---RADREHVVLLSDWTDLDPAALFRKLKVMA 197 (587)
T ss_pred cCCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCccccC---CCCceEEEEeeecccCCHHHHHHhhhccc
Confidence 9999999999999 8899999999997665 49999999998654333 578999999999998776555433221
Q ss_pred -------------------CCCC----------------C------CCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEE
Q 039250 189 -------------------SGGA----------------P------PPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTY 227 (571)
Q Consensus 189 -------------------~g~~----------------~------~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~ 227 (571)
.|.. . .....++|||+.. ...+.+.+++|++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rv 270 (587)
T TIGR01480 198 GHDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKV 270 (587)
T ss_pred ccccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEE
Confidence 0100 0 0012377888842 13467899999999
Q ss_pred EEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcc
Q 039250 228 LLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNIS 307 (571)
Q Consensus 228 rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~ 307 (571)
||||||+|+.+.+.|+|+||+|+||++||.+++|+.++.+.|+|||||||+|+.++ .|.|.|.+....... .
T Consensus 271 RLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g~~~i~a~~~~~~~-------~ 342 (587)
T TIGR01480 271 RLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DDAFTIFAQDSDRTG-------Y 342 (587)
T ss_pred EEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-CceEEEEEEecCCCc-------e
Confidence 99999999999999999999999999999999999999999999999999999874 489999987754432 4
Q ss_pred eEEEEEEcCCCCCCCCCCCCCCC-----CCCccc-hh---------hh--------------------------------
Q 039250 308 AIAYFQYLGAQPNSLALPATLPR-----FNDNLA-VK---------TV-------------------------------- 340 (571)
Q Consensus 308 ~~ail~y~~~~~~~~~~p~~~p~-----~~~~~~-~~---------~~-------------------------------- 340 (571)
..++|++.+.... ..| .+++ ..+... .. ..
T Consensus 343 ~~~~l~~~~~~~~--~~p-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (587)
T TIGR01480 343 ARGTLAVRLGLTA--PVP-ALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHP 419 (587)
T ss_pred EEEEEecCCCCCC--CCC-CCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCc
Confidence 6778887654221 112 1110 000000 00 00
Q ss_pred ------------------------------------cccCccCCCCCCCccCceEEEEEEeccccccCCCCCCCcccCCC
Q 039250 341 ------------------------------------MDGLRSLNPVPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLN 384 (571)
Q Consensus 341 ------------------------------------~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (571)
..+|+++.+...+..+++++.+.+.. .
T Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g-----------------~ 482 (587)
T TIGR01480 420 ASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTG-----------------N 482 (587)
T ss_pred ccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcC-----------------C
Confidence 00000000000001112222211110 1
Q ss_pred CceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEe
Q 039250 385 NGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQ 464 (571)
Q Consensus 385 ~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~ 464 (571)
...+.|++||..|. ....+.++.|++|+|++.
T Consensus 483 m~~~~wtiNG~~~~------------------------------------------------~~~pl~v~~Gervri~l~ 514 (587)
T TIGR01480 483 MERFAWSFDGEAFG------------------------------------------------LKTPLRFNYGERLRVVLV 514 (587)
T ss_pred CceeEEEECCccCC------------------------------------------------CCCceEecCCCEEEEEEE
Confidence 12445777766431 112456899999999999
Q ss_pred eCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCceeeEEeeechhhhhcc
Q 039250 465 DTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWG 544 (571)
Q Consensus 465 N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG~w~~HCHil~H~d~G 544 (571)
|.+. +.||||+||+.|+|+..+ |. .+.++||+.|+|++.++++|++||||.|+||||++.|++.|
T Consensus 515 N~t~---~~HpmHlHG~~f~v~~~~-G~-----------~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~G 579 (587)
T TIGR01480 515 NDTM---MAHPIHLHGMWSELEDGQ-GE-----------FQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAG 579 (587)
T ss_pred CCCC---CCcceeEcCceeeeecCC-Cc-----------ccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCc
Confidence 9764 899999999999998753 21 23588999999999999999999999999999999999999
Q ss_pred cEEEEEE
Q 039250 545 LGTVLIV 551 (571)
Q Consensus 545 M~~~~~V 551 (571)
||+.|+|
T Consensus 580 M~~~~~v 586 (587)
T TIGR01480 580 MFREVTV 586 (587)
T ss_pred CcEEEEe
Confidence 9999987
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.9e-75 Score=623.09 Aligned_cols=428 Identities=19% Similarity=0.214 Sum_probs=300.5
Q ss_pred eEEEEEEEEEEEeecCCce-eeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCc
Q 039250 33 TRFYEFKIQATRVNKLCNA-KDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCP 111 (571)
Q Consensus 33 ~~~~~l~i~~~~~~~~g~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~ 111 (571)
...|+|++++...++++.. ..+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++.+. +||+| ||+
T Consensus 45 ~~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~ 119 (523)
T PRK10965 45 RGRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGI 119 (523)
T ss_pred CccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCC
Confidence 4469999999999997644 57999999999999999999999999999999999999999999876 69987 899
Q ss_pred CCCCCeEEEEEEeCCCCcceeEeecccccc-----cceeeEEEEecCCCCCCCCCC--CCccEEEEEeeEeeccHHHHHH
Q 039250 112 IQSGQTFTYEFTMFQQKGTFFWHAHVSWLR-----GTVYGAIVVYPKTGVPYPFQF--PYQEHIIILGEYWLQDVVQLER 184 (571)
Q Consensus 112 i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~ 184 (571)
|+||++++|+|++++++||||||+|.++.. +||+|+|||+++++...+++. ..+|++++++||+++...++..
T Consensus 120 I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~ 199 (523)
T PRK10965 120 IAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDY 199 (523)
T ss_pred CCCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceec
Confidence 999999999999966799999999986532 499999999998765444443 3469999999999876544311
Q ss_pred HHhh-CCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEE-cCceeEEEEeCCCCC-Ce
Q 039250 185 QVLA-SGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAI-ANHKLTIVEADAEYT-KP 261 (571)
Q Consensus 185 ~~~~-~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~P 261 (571)
.... .......+|.++|||+.. |.+.++ +++|||||||+|+.+.+.|++ +||+|+|||+||+++ +|
T Consensus 200 ~~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P 268 (523)
T PRK10965 200 QLDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEP 268 (523)
T ss_pred cccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCc
Confidence 1100 011224678999999954 777775 579999999999999999998 899999999999987 89
Q ss_pred eEeceEEeCCCceEEEEEEeCCCCceeEEEeecccccCC--CccCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCccchh
Q 039250 262 FSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQG--VSFQNISAIAYFQYLGAQPNS-LALPATLPRFNDNLAVK 338 (571)
Q Consensus 262 ~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~--~~~~~~~~~ail~y~~~~~~~-~~~p~~~p~~~~~~~~~ 338 (571)
+.+++|.|+|||||||+|++++ .+.|.+.+........ ..... ...++++....... ..+| ..
T Consensus 269 ~~v~~l~lapGeR~dvlv~~~~-~~~~~l~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~P----~~------- 334 (523)
T PRK10965 269 VKVSELPILMGERFEVLVDTSD-GKAFDLVTLPVSQMGMALAPFDK--PLPVLRIQPLLISASGTLP----DS------- 334 (523)
T ss_pred cEeCeEEECccceEEEEEEcCC-CceEEEEEecccCcccccccCCC--ceeEEEEeccCcCCCCcCC----hh-------
Confidence 9999999999999999999986 4789988765433211 01111 23444444321111 0122 11
Q ss_pred hhcccCccCCCCCCC-ccCceEEEEEEecccc---------ccC----CCCCC----Ccc-c-------------CC-CC
Q 039250 339 TVMDGLRSLNPVPVP-KEIDANLFVTIGLNVQ---------KCR----SGNPQ----QNC-R-------------GL-NN 385 (571)
Q Consensus 339 ~~~~~l~~l~p~~~p-~~~d~~~~~~~~~~~~---------~~~----~~~~~----~~~-~-------------~~-~~ 385 (571)
+.++.+...+ ....+++.+.+..... ... .++.. ... . ++ ..
T Consensus 335 -----l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 335 -----LASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred -----hccCCCCCcccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111000 1112333332211000 000 00000 000 0 00 00
Q ss_pred ceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEee
Q 039250 386 GVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQD 465 (571)
Q Consensus 386 ~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N 465 (571)
....|+|||+.|.. ......++.|++++|+|.|
T Consensus 410 ~~~~~~ING~~~~~-----------------------------------------------~~~~~~~~~G~~e~w~i~N 442 (523)
T PRK10965 410 FHHANKINGKAFDM-----------------------------------------------NKPMFAAKKGQYERWVISG 442 (523)
T ss_pred ccccccCCCeECCC-----------------------------------------------CCcceecCCCCEEEEEEEe
Confidence 00013455544321 1133568899999999999
Q ss_pred CCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec----CceeeEEeeechhhh
Q 039250 466 TATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTAD----NPGVWFMHCHFDIHQ 541 (571)
Q Consensus 466 ~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~ad----npG~w~~HCHil~H~ 541 (571)
.+. .+.|||||||++||||+++... ....++.|||||.|++ +.++|+++++ ++|.||||||||+||
T Consensus 443 ~~~--~~~Hp~HlHg~~F~Vl~~~g~~-------~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He 512 (523)
T PRK10965 443 VGD--MMLHPFHIHGTQFRILSENGKP-------PAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE 512 (523)
T ss_pred CCC--CCccCeEEeCcEEEEEEecCCC-------CCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh
Confidence 752 2689999999999999996422 1224568999999988 6777776665 677999999999999
Q ss_pred hcccEEEEEEe
Q 039250 542 SWGLGTVLIVK 552 (571)
Q Consensus 542 d~GM~~~~~V~ 552 (571)
|.|||+.|+|.
T Consensus 513 d~GMM~~~~V~ 523 (523)
T PRK10965 513 DTGMMLGFTVS 523 (523)
T ss_pred ccCccceeEeC
Confidence 99999999883
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=7.4e-74 Score=607.39 Aligned_cols=403 Identities=15% Similarity=0.162 Sum_probs=294.7
Q ss_pred EEEEEEEEEEeecC-CceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCC
Q 039250 35 FYEFKIQATRVNKL-CNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQ 113 (571)
Q Consensus 35 ~~~l~i~~~~~~~~-g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~ 113 (571)
.|+|+++...++++ |..+.+|+|||++|||+||+++||+|+|+|+|.|+++|+|||||+++++. .+||++ ++|+
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 48999999999988 46789999999999999999999999999999999999999999999876 467765 7899
Q ss_pred CCCeEEEEEEeCCCCcceeEeecccccc-----cceeeEEEEecCCCCCCCCCC--CCccEEEEEeeEeeccHHHHHHHH
Q 039250 114 SGQTFTYEFTMFQQKGTFFWHAHVSWLR-----GTVYGAIVVYPKTGVPYPFQF--PYQEHIIILGEYWLQDVVQLERQV 186 (571)
Q Consensus 114 PG~~~~y~~~~~~~~Gt~wYH~H~~~~~-----~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~~ 186 (571)
||++|+|+|++++++||||||+|.++.+ +||+|++||+++.+...+++. ...|++|+++||.++.......
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~-- 199 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY-- 199 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccc--
Confidence 9999999999866799999999998743 499999999988765444443 3459999999999876433211
Q ss_pred hhCCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEE-cCceeEEEEeCCCCC-CeeEe
Q 039250 187 LASGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAI-ANHKLTIVEADAEYT-KPFST 264 (571)
Q Consensus 187 ~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i-~gh~~~via~DG~~~-~P~~~ 264 (571)
.........+|.++|||+.. |.++|++| +|||||||+|+.+.+.|+| +||+|+|||+||+++ +|+.+
T Consensus 200 ~~~~~~g~~gd~~lvNG~~~----------p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 200 NEPGSGGFVGDTLLVNGVQS----------PYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred cccccCCccCCeeEECCccC----------CeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 01111234678999999944 78999885 8999999999999999999 899999999998777 89999
Q ss_pred ceEEeCCCceEEEEEEeCCCCceeEEEeecccccC-C--CccCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCCccchh
Q 039250 265 DRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQ-G--VSFQNI---SAIAYFQYLGAQPNSLALPATLPRFNDNLAVK 338 (571)
Q Consensus 265 d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~-~--~~~~~~---~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~ 338 (571)
++|.|+|||||||+|++++ .+.+.+++....... . ..+... ....+++........ ..+..+|.
T Consensus 269 ~~l~l~pGeR~dvlVd~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~-------- 338 (471)
T PRK10883 269 KQLSLAPGERREILVDMSN-GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LVTDNLPM-------- 338 (471)
T ss_pred CeEEECCCCeEEEEEECCC-CceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CCCCcCCh--------
Confidence 9999999999999999975 356777663211100 0 000000 011222222110000 00000010
Q ss_pred hhcccCccCCCCCCCccCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCccccc
Q 039250 339 TVMDGLRSLNPVPVPKEIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTE 418 (571)
Q Consensus 339 ~~~~~l~~l~p~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~ 418 (571)
.+.+ +...+....+++.+.++. . .|.|||+.|....
T Consensus 339 ----~l~~--~~~~~~~~~~~~~~~l~~-------------------~--~~~INg~~~~~~~----------------- 374 (471)
T PRK10883 339 ----RLLP--DEIMEGSPIRSREISLGD-------------------D--LPGINGALWDMNR----------------- 374 (471)
T ss_pred ----hhcC--CCCCCCCCcceEEEEecC-------------------C--cCccCCcccCCCc-----------------
Confidence 0110 001112223333333311 1 3678888763210
Q ss_pred CCCCCCccccccCCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCC
Q 039250 419 DFPEAPLKFYDFVNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTA 498 (571)
Q Consensus 419 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~ 498 (571)
....++.|++++|.+.|. +.|||||||+.|||++++....
T Consensus 375 ------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~~----- 414 (471)
T PRK10883 375 ------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAMP----- 414 (471)
T ss_pred ------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCCC-----
Confidence 124578899999999874 6899999999999999964311
Q ss_pred CCCCCCCCcceeEEeCCCcEEEEEEEecCce----eeEEeeechhhhhcccEEEEEEeC
Q 039250 499 NFNLIDPPYMNTIGVPVGGWAAIRFTADNPG----VWFMHCHFDIHQSWGLGTVLIVKN 553 (571)
Q Consensus 499 ~~~~~~p~~rDTv~vpp~g~~~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 553 (571)
...+..|||||.|+ +.++|+++++++| .||||||||+|||.|||+.|+|.+
T Consensus 415 --~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 415 --FPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred --CccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 11234799999996 4699999999887 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-58 Score=489.09 Aligned_cols=413 Identities=23% Similarity=0.300 Sum_probs=291.0
Q ss_pred EEEEEEEEEEee-cCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCC
Q 039250 35 FYEFKIQATRVN-KLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQ 113 (571)
Q Consensus 35 ~~~l~i~~~~~~-~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~ 113 (571)
+..+........ ..+.....|.|||++|||+||+++||+|+|+++|++.+.|++||||+.+++ .+||++..+|+.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p~--~~dG~~~~~~~~~~ 111 (451)
T COG2132 34 RTFLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVPG--EMDGVPPLTQIPPG 111 (451)
T ss_pred ceEEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccCc--cccCCCcccccCCC
Confidence 334444444333 457888999999999999999999999999999998888999999988884 46999999999999
Q ss_pred CCCeEEEEEEeCCCCcceeEeecccccc-cceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhCCCC
Q 039250 114 SGQTFTYEFTMFQQKGTFFWHAHVSWLR-GTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLASGGA 192 (571)
Q Consensus 114 PG~~~~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~ 192 (571)
||++++|.|+. +.+||||||+|.++|. .||+|++||++..+.+. .+|.+..+++.+|........... .....
T Consensus 112 ~~~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~ 185 (451)
T COG2132 112 PGETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMG 185 (451)
T ss_pred CCCcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--Ccccc
Confidence 99999999999 7777999999999975 49999999999876544 457777777777876554333221 12223
Q ss_pred CCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCC
Q 039250 193 PPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPG 272 (571)
Q Consensus 193 ~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pg 272 (571)
....+..+|||+.. |.+.++. ++|||||+|+++.+.+.+++.+++++||++||.+++|..+|.+.|+||
T Consensus 186 ~~~g~~~~vnG~~~----------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~ 254 (451)
T COG2132 186 GFPGDTLLVNGAIL----------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPG 254 (451)
T ss_pred CCCCCeEEECCCcc----------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCc
Confidence 34678899999743 6666666 569999999998888889999999999999999998899999999999
Q ss_pred ceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCCCCCCCCCCCCCccchhhhcccCccCCCCCC
Q 039250 273 QTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSLNPVPV 352 (571)
Q Consensus 273 eR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~~~~~~l~~l~p~~~ 352 (571)
||+||++++.+ .+.+.+.+....... ...+.......... ..+...+..... ...........+.....
T Consensus 255 er~~v~v~~~~-~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~ 323 (451)
T COG2132 255 ERYEVLVDMND-GGAVTLTALGEDMPD-------TLKGFRAPNPILTP--SYPVLNGRVGAP-TGDMADHAPVGLLVTIL 323 (451)
T ss_pred ceEEEEEEcCC-CCeEEEEeccccCCc-------eeeeeecccccccc--ccccccccccCC-Ccchhhccccccchhhc
Confidence 99999999986 578888887611111 12222221111000 000000000000 00000000000000000
Q ss_pred Ccc-CceEEEEEEeccccccCCCCCCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCccccccC
Q 039250 353 PKE-IDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDFV 431 (571)
Q Consensus 353 p~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~ 431 (571)
... ..+...+.+.. .-....|.+|+..|..
T Consensus 324 ~~~~~~~~~~~~l~~-----------------~~~~~~~~~n~~~~~~-------------------------------- 354 (451)
T COG2132 324 VEPGPNRDTDFHLIG-----------------GIGGYVWAINGKAFDD-------------------------------- 354 (451)
T ss_pred CCCcccccccchhhc-----------------ccccccccccCccCCC--------------------------------
Confidence 000 00000000000 0011234454443310
Q ss_pred CCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeE
Q 039250 432 NGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTI 511 (571)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv 511 (571)
....+.++.|++++|++.|.+ .+.|||||||+.|+|++.+ . ......+.||||+
T Consensus 355 ---------------~~~~~~~~~G~~~~~~i~n~~---~~~HP~HlHg~~F~v~~~~-~-------~~~~~~~~~kDTv 408 (451)
T COG2132 355 ---------------NRVTLIAKAGTRERWVLTNDT---PMPHPFHLHGHFFQVLSGD-A-------PAPGAAPGWKDTV 408 (451)
T ss_pred ---------------CcCceeecCCCEEEEEEECCC---CCccCeEEcCceEEEEecC-C-------CcccccCccceEE
Confidence 124567889999999999975 3899999999999999996 1 1223567899999
Q ss_pred EeCCCcEEEEEEEecCceeeEEeeechhhhhcccEEEEEEe
Q 039250 512 GVPVGGWAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 512 ~vpp~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
.+.++..++|+|.+++||.|+||||+++|++.|||..+.|.
T Consensus 409 ~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 409 LVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred EeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 99999999999999999999999999999999999999885
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=3.1e-47 Score=383.46 Aligned_cols=264 Identities=18% Similarity=0.191 Sum_probs=216.2
Q ss_pred CcceEEEEEEEEEEEeec-CCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCC--CCeeEEecccccCCCCCCCCCCc
Q 039250 30 GRSTRFYEFKIQATRVNK-LCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSP--YNATIHWHGVRQRLSCWFDGPAY 106 (571)
Q Consensus 30 ~~~~~~~~l~i~~~~~~~-~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~~iH~HG~~~~~~~~~DG~~~ 106 (571)
.+.+++|+|++++..++. +|..+.+|+|||++|||+|++++||+|+|+|+|.++ .++++||||.. ++||++.
T Consensus 24 ~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~~ 98 (311)
T TIGR02376 24 GPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGAA 98 (311)
T ss_pred CCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCCc
Confidence 357899999999999884 699999999999999999999999999999999975 58999999963 3699888
Q ss_pred cccCcCCCCCeEEEEEEeCCCCcceeEeecccc----cc-cceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHH
Q 039250 107 ITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSW----LR-GTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQ 181 (571)
Q Consensus 107 ~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~----~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~ 181 (571)
++| |+||++++|+|++ +++||||||||.++ +. .||+|+|||++++.. +..|+|++++++||+++....
T Consensus 99 ~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~~ 171 (311)
T TIGR02376 99 LTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDEG 171 (311)
T ss_pred cee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEecccccc
Confidence 777 9999999999999 88999999999764 32 499999999987532 256899999999999865322
Q ss_pred HHHHHhhCC--CCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCC
Q 039250 182 LERQVLASG--GAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYT 259 (571)
Q Consensus 182 ~~~~~~~~g--~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~ 259 (571)
......... .....++.++|||+.++. .+.+++++|+++||||+|++..+.+.|+++|+.+++|+.||.++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~~ 244 (311)
T TIGR02376 172 EGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKFA 244 (311)
T ss_pred ccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCccc
Confidence 100000000 011356899999996532 24679999999999999999989899999999999999999999
Q ss_pred Cee--EeceEEeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCC
Q 039250 260 KPF--STDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQ 318 (571)
Q Consensus 260 ~P~--~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~ 318 (571)
.|. .++++.|+||||+||+|++++ +|.|+++++.+.... .....++|+|++..
T Consensus 245 ~~~~~~~~~~~i~PG~R~dv~v~~~~-pG~y~~~~~~~~~~~-----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 245 NPPNRDVETWFIPGGSAAAALYTFEQ-PGVYAYVDHNLIEAF-----EKGAAAQVKVEGAW 299 (311)
T ss_pred CCCCCCcceEEECCCceEEEEEEeCC-CeEEEEECcHHHHHH-----hCCCEEEEEECCCC
Confidence 653 489999999999999999996 699999999865431 12467999998764
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=3.3e-35 Score=252.90 Aligned_cols=116 Identities=41% Similarity=0.742 Sum_probs=108.2
Q ss_pred EEEEEEeecCCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeE
Q 039250 39 KIQATRVNKLCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTF 118 (571)
Q Consensus 39 ~i~~~~~~~~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~ 118 (571)
+|++..++++|..+.+|+|||++|||+||+++||+|+|+|+|.++++++|||||+++...+|+||+++++||+|+||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEEEEeCCCCcceeEeecccccc-cceeeEEEEecCC
Q 039250 119 TYEFTMFQQKGTFFWHAHVSWLR-GTVYGAIVVYPKT 154 (571)
Q Consensus 119 ~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~ 154 (571)
+|+|++++++||||||||.+++. +||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 99999955599999999999863 5999999999863
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=2.1e-29 Score=225.85 Aligned_cols=107 Identities=40% Similarity=0.788 Sum_probs=94.7
Q ss_pred CCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCC-CCCCCCCCCCcceeEEeCCCcEEEEE
Q 039250 444 SMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQ-TANFNLIDPPYMNTIGVPVGGWAAIR 522 (571)
Q Consensus 444 ~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~-~~~~~~~~p~~rDTv~vpp~g~~~ir 522 (571)
...+...+.++.|++++|+|+|.+. +.|||||||++|+|++++.+.++.. ...++..+|.||||+.|+++++++||
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~---~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~ 105 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGS---MPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIR 105 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTT---SSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCC---CccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEE
Confidence 4557789999999999999999653 7999999999999999987665322 34567889999999999999999999
Q ss_pred EEecCceeeEEeeechhhhhcccEEEEEEeC
Q 039250 523 FTADNPGVWFMHCHFDIHQSWGLGTVLIVKN 553 (571)
Q Consensus 523 f~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 553 (571)
|+++|||.|+|||||++|+|.|||+.|.|.+
T Consensus 106 ~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 106 FRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999999999864
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.94 E-value=1.4e-26 Score=211.99 Aligned_cols=150 Identities=37% Similarity=0.605 Sum_probs=121.0
Q ss_pred ccEEEEEeeEeeccHHHHHHHHhhCCC----CCCCCCcEEEcCccCCCCCCC-----CCCeeEEEEeCCCEEEEEEeecC
Q 039250 165 QEHIIILGEYWLQDVVQLERQVLASGG----APPPSNAYTINGHPGPNYNCS-----ANDVYKIEVVPGKTYLLRLINAG 235 (571)
Q Consensus 165 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~~~~~~~~-----~~~~p~l~v~~G~~~rlRliNa~ 235 (571)
.|++|+++||+++....+..+.+..+. .+..++.++|||+.. +.|+ ....+.+.+++|++|||||||+|
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGR--FDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTC--BTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccc--cccccccccccccceEEEcCCcEEEEEEEecc
Confidence 478999999999888777665554432 367899999999843 4443 34679999999999999999999
Q ss_pred ccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEc
Q 039250 236 LNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYL 315 (571)
Q Consensus 236 ~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~ 315 (571)
+...+.|+|+||+|+|||+||.+++|+.+++|.|+|||||||+|++++++|+|+|++........ ........|+|+|+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~-~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSIN-DPQNGNALAILRYD 157 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSH-SHGGGTTEEEEEET
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCc-cCCCcEEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999878999999962212111 12334678999998
Q ss_pred CC
Q 039250 316 GA 317 (571)
Q Consensus 316 ~~ 317 (571)
++
T Consensus 158 ~~ 159 (159)
T PF00394_consen 158 GA 159 (159)
T ss_dssp TS
T ss_pred CC
Confidence 63
No 21
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.70 E-value=1.2e-16 Score=142.84 Aligned_cols=102 Identities=16% Similarity=0.214 Sum_probs=80.4
Q ss_pred CCceeeEEEECCcCCCceEEEecCCEEEEEEEeCCC---CCeeEEecccccCCCCCCCCCCccccCcCCCC---C-e--E
Q 039250 48 LCNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSP---YNATIHWHGVRQRLSCWFDGPAYITQCPIQSG---Q-T--F 118 (571)
Q Consensus 48 ~g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~---~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG---~-~--~ 118 (571)
.+.....+.++| .++|+|++++||+|+|+|+|.++ ....||+||...+..+-|||++.++|++|.|+ + . .
T Consensus 37 ~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~ 115 (148)
T TIGR03095 37 PGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYT 115 (148)
T ss_pred CCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCcccee
Confidence 356677788888 46899999999999999999954 34666666665544444799999999998884 1 1 3
Q ss_pred EEEEEeCCCCcceeEeeccccccc-ceeeEEEEe
Q 039250 119 TYEFTMFQQKGTFFWHAHVSWLRG-TVYGAIVVY 151 (571)
Q Consensus 119 ~y~~~~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~ 151 (571)
++.|+. .++||||||||..++++ ||+|.|||+
T Consensus 116 ~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 556666 58999999999988765 999999995
No 22
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.67 E-value=3.8e-15 Score=161.62 Aligned_cols=228 Identities=14% Similarity=0.143 Sum_probs=146.2
Q ss_pred EEECCcCCC--ceEEEecCCEEEEEEEeCC-CCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEEEEEeCCC
Q 039250 55 VTVNNMFPG--PVVYAQEDDRIIVKVTNQS-PYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTYEFTMFQQ 127 (571)
Q Consensus 55 ~~~Ng~~pg--P~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~ 127 (571)
+++||+.+. +++.+++|+++++||.|.. .....++..|....... .||.+- +....|.||||++..+++ .+
T Consensus 249 ~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~~ 326 (587)
T TIGR01480 249 YLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-TG 326 (587)
T ss_pred EEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-CC
Confidence 789999863 6799999999999999994 45678888888765544 599763 345679999999999987 56
Q ss_pred CcceeEeecccccccceeeEEEEecCC-CCCCC-CCCC----CccEE---------E---EEe-----eE----------
Q 039250 128 KGTFFWHAHVSWLRGTVYGAIVVYPKT-GVPYP-FQFP----YQEHI---------I---ILG-----EY---------- 174 (571)
Q Consensus 128 ~Gt~wYH~H~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~---------l---~~~-----d~---------- 174 (571)
.|.|+..+...+.. |...+.+..... ..+.| .+.. ..+.. . ... +.
T Consensus 327 ~g~~~i~a~~~~~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (587)
T TIGR01480 327 DDAFTIFAQDSDRT-GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPM 405 (587)
T ss_pred CceEEEEEEecCCC-ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccC
Confidence 78999988664332 333333332211 11011 0000 00000 0 000 00
Q ss_pred eec----------------------------------------cHHHH--HHHHhhCC-----CCC----------C-CC
Q 039250 175 WLQ----------------------------------------DVVQL--ERQVLASG-----GAP----------P-PS 196 (571)
Q Consensus 175 ~~~----------------------------------------~~~~~--~~~~~~~g-----~~~----------~-~~ 196 (571)
.+. ..... +..+.... ..+ . ..
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~~ 485 (587)
T TIGR01480 406 DHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNMER 485 (587)
T ss_pred ccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCce
Confidence 000 00000 00000000 000 0 01
Q ss_pred CcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEE
Q 039250 197 NAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVN 276 (571)
Q Consensus 197 ~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~d 276 (571)
-.|+|||+.+. ..+.|+++.|+++||||+|.+.. .+.+|+|||.|.+...||.+ +...+++.|.|||+++
T Consensus 486 ~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~-~HpmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~~ 555 (587)
T TIGR01480 486 FAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMM-AHPIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKRS 555 (587)
T ss_pred eEEEECCccCC-------CCCceEecCCCEEEEEEECCCCC-CcceeEcCceeeeecCCCcc--cccCCceeeCCCCEEE
Confidence 13899999541 23568999999999999998854 55699999999999889863 2345889999999999
Q ss_pred EEEEeCCCCceeEEEeeccc
Q 039250 277 VLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 277 v~v~~~~~~g~~~i~~~~~~ 296 (571)
+.|++++ +|.|++|||...
T Consensus 556 ~~f~ad~-pG~w~~HCH~l~ 574 (587)
T TIGR01480 556 FRVTADA-LGRWAYHCHMLL 574 (587)
T ss_pred EEEECCC-CeEEEEcCCCHH
Confidence 9999985 799999999743
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.66 E-value=3.5e-14 Score=143.58 Aligned_cols=244 Identities=19% Similarity=0.135 Sum_probs=151.8
Q ss_pred CCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCcc-ceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCce
Q 039250 196 SNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLN-MENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQT 274 (571)
Q Consensus 196 ~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~-~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR 274 (571)
.+.+++||+. ..|.|+++.|+++++++.|.... ..+.+++|++. +.||... ...+.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 4578999983 34899999999999999998632 45678898874 4577421 223899999
Q ss_pred EEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCCCCCCCCCCCCCccchhhhcccCccCCCCCCCc
Q 039250 275 VNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSLNPVPVPK 354 (571)
Q Consensus 275 ~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~~~~~~l~~l~p~~~p~ 354 (571)
+.+-+++++ +|.||+|||........... ...+.|...... ..+
T Consensus 108 ~ty~F~~~~-~Gty~YH~H~~~~~~~q~~~--Gl~G~liV~~~~--------~~~------------------------- 151 (311)
T TIGR02376 108 ATLRFKATR-PGAFVYHCAPPGMVPWHVVS--GMNGAIMVLPRE--------GLP------------------------- 151 (311)
T ss_pred EEEEEEcCC-CEEEEEEcCCCCchhHHhhc--CcceEEEeeccC--------CCc-------------------------
Confidence 999999875 79999999964311100011 233444443221 001
Q ss_pred cCceEEEEEEeccccccCC---CCCCCccc-CCCCceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCcccccc
Q 039250 355 EIDANLFVTIGLNVQKCRS---GNPQQNCR-GLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDF 430 (571)
Q Consensus 355 ~~d~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~ 430 (571)
+.|+++.+.++.-...... +....+.. ......-...+||+...
T Consensus 152 ~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~-------------------------------- 199 (311)
T TIGR02376 152 EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMRTLTPTHVVFNGAVGA-------------------------------- 199 (311)
T ss_pred CcceeEEEeeeeEeccccccccccccchHHHHhcCCCCEEEECCccCC--------------------------------
Confidence 1122222211100000000 00000000 00000012334443210
Q ss_pred CCCCCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCC-cce
Q 039250 431 VNGAPNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPP-YMN 509 (571)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~-~rD 509 (571)
-.....++.|++++|.|.|.+. ...+.||++|++|.++....+... .+. ..|
T Consensus 200 ----------------~~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~DG~~~~---------~~~~~~~ 252 (311)
T TIGR02376 200 ----------------LTGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVTGKFAN---------PPNRDVE 252 (311)
T ss_pred ----------------CCCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEECCcccC---------CCCCCcc
Confidence 0012367889999999999753 367899999999999998532211 122 369
Q ss_pred eEEeCCCcEEEEEEEecCceeeEEeeechhhh-hcccEEEEEEeC
Q 039250 510 TIGVPVGGWAAIRFTADNPGVWFMHCHFDIHQ-SWGLGTVLIVKN 553 (571)
Q Consensus 510 Tv~vpp~g~~~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~ 553 (571)
++.|.||+...|.++++.||.|.+|||...|. ..||+++++|..
T Consensus 253 ~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g 297 (311)
T TIGR02376 253 TWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEG 297 (311)
T ss_pred eEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECC
Confidence 99999999999999999999999999999998 779999998853
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.51 E-value=8.3e-13 Score=142.37 Aligned_cols=234 Identities=15% Similarity=0.087 Sum_probs=144.0
Q ss_pred eeeEEEECCcCCCceEEEecCCEEEEEEEeCC-CCCeeEEe-cc--cccCCCCCCCCCCc-----cccCcCCCCCeEEEE
Q 039250 51 AKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQS-PYNATIHW-HG--VRQRLSCWFDGPAY-----ITQCPIQSGQTFTYE 121 (571)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~-HG--~~~~~~~~~DG~~~-----~~q~~i~PG~~~~y~ 121 (571)
....+++||+. .|.+.++ |.++++|+.|.. .....+.+ .| +.+.. .||.+. +....|.||||++..
T Consensus 211 ~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa---~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 211 FGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA---SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred cCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE---eCCCcccCccEeCeEEECccceEEEE
Confidence 45678999996 5898885 669999999994 46667776 44 34443 398552 335679999999999
Q ss_pred EEeCCCCcceeEeecccccccce--------eeEEEEec--CC-CCCC-----CCCC-C------CccEEEEEeeEee--
Q 039250 122 FTMFQQKGTFFWHAHVSWLRGTV--------YGAIVVYP--KT-GVPY-----PFQF-P------YQEHIIILGEYWL-- 176 (571)
Q Consensus 122 ~~~~~~~Gt~wYH~H~~~~~~Gl--------~G~liV~~--~~-~~~~-----~~~~-~------~~e~~l~~~d~~~-- 176 (571)
++. .+.|.++...-.... .|+ .-.+.+.. .. .... +.+. . .+.+.+.+..+.-
T Consensus 286 v~~-~~~~~~~l~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQ-MGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccC-cccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 988 556776665532111 111 11222321 11 1000 0000 0 0122222211100
Q ss_pred -------ccHHHHHHH--------HhhCC------------CC-CCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEE
Q 039250 177 -------QDVVQLERQ--------VLASG------------GA-PPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYL 228 (571)
Q Consensus 177 -------~~~~~~~~~--------~~~~g------------~~-~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~r 228 (571)
......... .+..| +. ......++|||+.++ . ..+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~---~---~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD---M---NKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC---C---CCcceecCCCCEEE
Confidence 000000000 00000 00 000112489999542 1 34778999999999
Q ss_pred EEEeecCccceEEEEEcCceeEEEEeCCCCCC---eeEeceEEeCCCceEEEEEEeCC---CCceeEEEeeccccc
Q 039250 229 LRLINAGLNMENFFAIANHKLTIVEADAEYTK---PFSTDRVMLGPGQTVNVLVTADQ---PIGKYSMAMGPYMSA 298 (571)
Q Consensus 229 lRliNa~~~~~~~~~i~gh~~~via~DG~~~~---P~~~d~l~l~pgeR~dv~v~~~~---~~g~~~i~~~~~~~~ 298 (571)
|+|+|.+....+.|||||+.|+|++.||.+.. +.++|+|.+.+ ++++++++++. .+|.|.+|||.....
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~He 512 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHE 512 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhh
Confidence 99999997556779999999999999999774 46789999977 88999999984 357999999986543
No 25
>PRK10883 FtsI repressor; Provisional
Probab=99.42 E-value=1.2e-11 Score=132.22 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=137.0
Q ss_pred CceeeEEEECCcCCCceEEEecCCEEEEEEEeC-CCCCeeEEe-cccccCCCCCCCCCCc-----cccCcCCCCCeEEEE
Q 039250 49 CNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQ-SPYNATIHW-HGVRQRLSCWFDGPAY-----ITQCPIQSGQTFTYE 121 (571)
Q Consensus 49 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~-l~~~~~iH~-HG~~~~~~~~~DG~~~-----~~q~~i~PG~~~~y~ 121 (571)
|.....+++||+. .|.|.|++| ++++|+.|. ......+++ .|....... .||.+. +.+..|.||||++..
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEE
Confidence 3446778999996 599999875 899999999 446778888 555332222 386442 345779999999999
Q ss_pred EEeCCCCcceeEeeccc-ccccceee------------EEEEecCCC---CCCCCCCCCccEEEEEeeEeeccHHHHHHH
Q 039250 122 FTMFQQKGTFFWHAHVS-WLRGTVYG------------AIVVYPKTG---VPYPFQFPYQEHIIILGEYWLQDVVQLERQ 185 (571)
Q Consensus 122 ~~~~~~~Gt~wYH~H~~-~~~~Gl~G------------~liV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 185 (571)
+++ .+.+.+.+++-.. +....+.+ .+-++.... ...+.+....... + ........ ..
T Consensus 283 Vd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--~---~~~~~~~~-~~ 355 (471)
T PRK10883 283 VDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDE--I---MEGSPIRS-RE 355 (471)
T ss_pred EEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCC--C---CCCCCcce-EE
Confidence 998 5555666665321 11111111 111111110 0000000000000 0 00000000 00
Q ss_pred HhhCCCCCCCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCe---e
Q 039250 186 VLASGGAPPPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKP---F 262 (571)
Q Consensus 186 ~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P---~ 262 (571)
. .- ..+.++|||+.++ ...+.++++.|++++|+|.|.. .+.|||||+.|+|++.||....| .
T Consensus 356 ~-~l-----~~~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~~---~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 356 I-SL-----GDDLPGINGALWD------MNRIDVTAQQGTWERWTVRADM---PQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred E-Ee-----cCCcCccCCcccC------CCcceeecCCCCEEEEEEECCC---CcCEeECCccEEEEEecCCCCCccccC
Confidence 0 00 0123469999642 1234578999999999998873 46799999999999999986543 4
Q ss_pred EeceEEeCCCceEEEEEEeCCCCc---eeEEEeecccccC
Q 039250 263 STDRVMLGPGQTVNVLVTADQPIG---KYSMAMGPYMSAQ 299 (571)
Q Consensus 263 ~~d~l~l~pgeR~dv~v~~~~~~g---~~~i~~~~~~~~~ 299 (571)
++|+|.+. +++.|+++|++..| .|++|||....-.
T Consensus 421 wkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD 458 (471)
T PRK10883 421 WKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMAD 458 (471)
T ss_pred cCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccc
Confidence 68999993 57999999996544 7999999975543
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.42 E-value=3.3e-11 Score=131.51 Aligned_cols=237 Identities=14% Similarity=0.084 Sum_probs=146.0
Q ss_pred eEEEECCcCC---------CceEEEecCCEEEEEEEeCC-CCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeE
Q 039250 53 DIVTVNNMFP---------GPVVYAQEDDRIIVKVTNQS-PYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTF 118 (571)
Q Consensus 53 ~~~~~Ng~~p---------gP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~ 118 (571)
..+++||+.- -++|+|++|+++++|+.|.. .....+|.+|....... .||++- +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 5689999841 14899999999999999994 45577888887765544 599752 345679999999
Q ss_pred EEEEEeCCCCcceeEeeccccc-----cc-ceeeEEEEecCCCCCCCC----CCCC------------------------
Q 039250 119 TYEFTMFQQKGTFFWHAHVSWL-----RG-TVYGAIVVYPKTGVPYPF----QFPY------------------------ 164 (571)
Q Consensus 119 ~y~~~~~~~~Gt~wYH~H~~~~-----~~-Gl~G~liV~~~~~~~~~~----~~~~------------------------ 164 (571)
+..+++.+.+|.||.+.+.... .. ...+.|...+......+. +..+
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999996568999999875311 11 123333333322111110 0000
Q ss_pred -----ccEEEEEee-EeeccHHHHHHHHhhCCCCCCCCCcEEEcCccCC----------------------------CCC
Q 039250 165 -----QEHIIILGE-YWLQDVVQLERQVLASGGAPPPSNAYTINGHPGP----------------------------NYN 210 (571)
Q Consensus 165 -----~e~~l~~~d-~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~----------------------------~~~ 210 (571)
..+.+.+.- +.... .....+.. ...-.+.|||.... .+.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~ 398 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCP------NNTCQGPN-GTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFN 398 (539)
T ss_pred CCCCCeEEEEEeecccccCc------ccccccCC-CcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCcccc
Confidence 000000000 00000 00000000 00013467776421 000
Q ss_pred CCCC----------CeeEEEEeCCCEEEEEEeecCc--cceEEEEEcCceeEEEEeC-CCC-----------CCeeEece
Q 039250 211 CSAN----------DVYKIEVVPGKTYLLRLINAGL--NMENFFAIANHKLTIVEAD-AEY-----------TKPFSTDR 266 (571)
Q Consensus 211 ~~~~----------~~p~l~v~~G~~~rlRliNa~~--~~~~~~~i~gh~~~via~D-G~~-----------~~P~~~d~ 266 (571)
.++. ....+.++.|+++.+.|.|.+. ...+.||||||.|+|++.+ |.+ ..|...|+
T Consensus 399 ~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDT 478 (539)
T TIGR03389 399 YTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNT 478 (539)
T ss_pred CCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeee
Confidence 0000 1235788899999999999863 2356799999999999986 321 14778999
Q ss_pred EEeCCCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 267 VMLGPGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 267 l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
+.+.++..+-+-++++ +||.|.+|||.....
T Consensus 479 v~vp~~g~vvirf~ad-NPG~W~~HCHi~~H~ 509 (539)
T TIGR03389 479 VGVPTGGWAAIRFVAD-NPGVWFMHCHLEVHT 509 (539)
T ss_pred EEcCCCceEEEEEecC-CCeEEEEEecccchh
Confidence 9999999999999998 579999999985544
No 27
>PLN02835 oxidoreductase
Probab=99.40 E-value=4.1e-11 Score=129.80 Aligned_cols=242 Identities=12% Similarity=0.134 Sum_probs=147.9
Q ss_pred eeEEEECCcCCCceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEEEEEeCC
Q 039250 52 KDIVTVNNMFPGPVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTYEFTMFQ 126 (571)
Q Consensus 52 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~ 126 (571)
...+++||+.. |++++++|+++++|+.|. ......+|..|....... .||.+- +....|.||||++..+++++
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 46789999975 899999999999999999 456788888888765444 599763 33466999999999999966
Q ss_pred CCcceeEeeccccccc--ceeeEEEEecCCC-CCCCCCC---CCc--c------EEEEEeeEeeccHH---HHH-----H
Q 039250 127 QKGTFFWHAHVSWLRG--TVYGAIVVYPKTG-VPYPFQF---PYQ--E------HIIILGEYWLQDVV---QLE-----R 184 (571)
Q Consensus 127 ~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~-~~~~~~~---~~~--e------~~l~~~d~~~~~~~---~~~-----~ 184 (571)
.+|.||...-...... ...+.+-.++... ...+.+. .+. + ....+......... ... .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 6899999864211111 2233333322211 0011110 000 0 00000000000000 000 0
Q ss_pred HHh-hCCCCCC--CCCcEEEcCccCCC----------------CCCC------CC-----CeeEEEEeCCCEEEEEEeec
Q 039250 185 QVL-ASGGAPP--PSNAYTINGHPGPN----------------YNCS------AN-----DVYKIEVVPGKTYLLRLINA 234 (571)
Q Consensus 185 ~~~-~~g~~~~--~~~~~~iNG~~~~~----------------~~~~------~~-----~~p~l~v~~G~~~rlRliNa 234 (571)
... ....... ....+.+||..+.. |... .. ..-.+.++.|+++.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 000 0000000 01246678775421 0000 00 11245677789999999998
Q ss_pred CccceEEEEEcCceeEEEEe-CCCC----------CCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccc
Q 039250 235 GLNMENFFAIANHKLTIVEA-DAEY----------TKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMS 297 (571)
Q Consensus 235 ~~~~~~~~~i~gh~~~via~-DG~~----------~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 297 (571)
+.. .+.||||||.|+|++. +|.+ ..|...|++.+.++..+-+-+.++ +||.|.+|||....
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H 500 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWER 500 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhh
Confidence 754 4569999999999997 5522 248999999999999999999998 57999999998543
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.35 E-value=9.2e-12 Score=107.39 Aligned_cols=94 Identities=19% Similarity=0.242 Sum_probs=76.9
Q ss_pred cceEEEEEEEE--EEEe---ecCCceeeEE-EECCcCCCceEEEecCCEEEEEEEeCCCCCe--eEEecccccCCCCCCC
Q 039250 31 RSTRFYEFKIQ--ATRV---NKLCNAKDIV-TVNNMFPGPVVYAQEDDRIIVKVTNQSPYNA--TIHWHGVRQRLSCWFD 102 (571)
Q Consensus 31 ~~~~~~~l~i~--~~~~---~~~g~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--~iH~HG~~~~~~~~~D 102 (571)
+..++|+++|+ +..+ +..|.....+ ++|+++..+.|+|++||+|++++.|..+.++ .++++|.
T Consensus 22 ~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi--------- 92 (135)
T TIGR03096 22 AAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI--------- 92 (135)
T ss_pred hccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc---------
Confidence 56789999999 6666 3468888777 9999999899999999999999999965443 3433331
Q ss_pred CCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccc
Q 039250 103 GPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWL 140 (571)
Q Consensus 103 G~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~ 140 (571)
+..|+||++.+|+|++ .++|+|||||-.|..
T Consensus 93 ------s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~ 123 (135)
T TIGR03096 93 ------SEVIKAGETKTISFKA-DKAGAFTIWCQLHPK 123 (135)
T ss_pred ------ceEECCCCeEEEEEEC-CCCEEEEEeCCCCCh
Confidence 2568999999999999 999999999988754
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=2.6e-10 Score=122.30 Aligned_cols=235 Identities=16% Similarity=0.153 Sum_probs=150.3
Q ss_pred CceeeEEEECCcCCCceEEEecCCEEEEEEEeCC-CCCeeEEecccccCCCCCCCCCC----ccccCcCCCCCeEEEEEE
Q 039250 49 CNAKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQS-PYNATIHWHGVRQRLSCWFDGPA----YITQCPIQSGQTFTYEFT 123 (571)
Q Consensus 49 g~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~~q~~i~PG~~~~y~~~ 123 (571)
+.......+||+.. |.+.+..| .+++|+.|.. .....+++.|....... .||.+ .+.+..+.|||+++...+
T Consensus 186 ~~~g~~~~vnG~~~-p~~~~~~g-~~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-PFKAVPGG-VVRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-ceeecCCC-eEEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 56677788899653 55555555 4999999996 77888888877766555 48876 566788999999999988
Q ss_pred eCCCCcceeEeecccccccceeeEEEEecCCCCCCC-------CCCCC---ccEEEEEeeEeeccHHHHHHHHhhCCCCC
Q 039250 124 MFQQKGTFFWHAHVSWLRGTVYGAIVVYPKTGVPYP-------FQFPY---QEHIIILGEYWLQDVVQLERQVLASGGAP 193 (571)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~~~~~~~-------~~~~~---~e~~l~~~d~~~~~~~~~~~~~~~~g~~~ 193 (571)
. ...|++-+.+........+.+..-.........+ .+..+ ......................... ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLI--GG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccccccccccccCCCcchhhccccccchhhcCCCcccccccchhh--cc
Confidence 8 5578888888772211122222221111100000 00111 1111111111111100000000000 00
Q ss_pred CCCCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCC---CeeEeceEEeC
Q 039250 194 PPSNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYT---KPFSTDRVMLG 270 (571)
Q Consensus 194 ~~~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~---~P~~~d~l~l~ 270 (571)
.....+.+||+... .....+.++.|+++||+|.|-+. ..+.||+||+.|+|++.| ... .+.++|++.+.
T Consensus 340 ~~~~~~~~n~~~~~------~~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~-~~~~~~~~~~kDTv~v~ 411 (451)
T COG2132 340 IGGYVWAINGKAFD------DNRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGD-APAPGAAPGWKDTVLVA 411 (451)
T ss_pred cccccccccCccCC------CCcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecC-CCcccccCccceEEEeC
Confidence 12245778888541 13578899999999999999998 566699999999999999 332 46789999999
Q ss_pred CCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 271 PGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 271 pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
|++++.+.++++. +|.|.+|||.....
T Consensus 412 ~~~~~~v~~~a~~-~g~~~~HCH~l~H~ 438 (451)
T COG2132 412 PGERLLVRFDADY-PGPWMFHCHILEHE 438 (451)
T ss_pred CCeEEEEEEeCCC-CCceEEeccchhHh
Confidence 9999999999985 68999999986543
No 30
>PLN02792 oxidoreductase
Probab=99.13 E-value=2e-08 Score=108.66 Aligned_cols=244 Identities=14% Similarity=0.108 Sum_probs=145.0
Q ss_pred eeeEEEECCcC--CCceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCC----ccccCcCCCCCeEEEEEE
Q 039250 51 AKDIVTVNNMF--PGPVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPA----YITQCPIQSGQTFTYEFT 123 (571)
Q Consensus 51 ~~~~~~~Ng~~--pgP~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~----~~~q~~i~PG~~~~y~~~ 123 (571)
....+++||+- ..++|.|++|+++++|+.|. ......++..|....... .||.+ .++...|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 34778999983 24799999999999999999 556678888887765544 59965 234567999999999999
Q ss_pred eCCCCcceeEeeccccccc-ceeeEEEEecCCCCCC---C-CCCC-CccEEEEE---eeEeec------cHH---HH--H
Q 039250 124 MFQQKGTFFWHAHVSWLRG-TVYGAIVVYPKTGVPY---P-FQFP-YQEHIIIL---GEYWLQ------DVV---QL--E 183 (571)
Q Consensus 124 ~~~~~Gt~wYH~H~~~~~~-Gl~G~liV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~------~~~---~~--~ 183 (571)
+++.+|.||.......... ...-+++-........ + .+.. +.....-. .++... ... .. .
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 9666799998876431101 1112333333221110 0 0000 00000000 000000 000 00 0
Q ss_pred --HHHh-hCCCCCC--CCCcEEEcCccCC----------------CCC-----CCC-------CCeeEEEEeCCCEEEEE
Q 039250 184 --RQVL-ASGGAPP--PSNAYTINGHPGP----------------NYN-----CSA-------NDVYKIEVVPGKTYLLR 230 (571)
Q Consensus 184 --~~~~-~~g~~~~--~~~~~~iNG~~~~----------------~~~-----~~~-------~~~p~l~v~~G~~~rlR 230 (571)
.... ....... ..-.+.|||.... .+. .+. ...-.+.++.|+++.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 0000 0000000 0123567776432 000 000 01234678889999999
Q ss_pred EeecCccceEEEEEcCceeEEEEeC-C----------CCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccc
Q 039250 231 LINAGLNMENFFAIANHKLTIVEAD-A----------EYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMS 297 (571)
Q Consensus 231 liNa~~~~~~~~~i~gh~~~via~D-G----------~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 297 (571)
|-|.... .+.||||||.|+|++.. | ++..|...|++.+.++.-+-+-+.++ +||.|.+|||....
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~~h 492 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFWAR 492 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcchhc
Confidence 9886543 45699999999999752 1 22368899999999999999999998 47999999986433
No 31
>PLN02991 oxidoreductase
Probab=99.13 E-value=1.8e-08 Score=109.04 Aligned_cols=242 Identities=10% Similarity=0.087 Sum_probs=142.6
Q ss_pred eeeEEEECCcCCCceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCC----ccccCcCCCCCeEEEEEEeC
Q 039250 51 AKDIVTVNNMFPGPVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPA----YITQCPIQSGQTFTYEFTMF 125 (571)
Q Consensus 51 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~----~~~q~~i~PG~~~~y~~~~~ 125 (571)
....+++||+...++++|++|+++++|+.|. ......++..|....... .||.+ .+.+..|.||||++...+++
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 3567899999656899999999999999999 445567777777655444 59975 23456799999999999997
Q ss_pred CCCcceeEeeccccccc--ceeeEEEEecCCCC-CCCCCC--CCccEEEEEe---eEeec-----c-HHH------H-HH
Q 039250 126 QQKGTFFWHAHVSWLRG--TVYGAIVVYPKTGV-PYPFQF--PYQEHIIILG---EYWLQ-----D-VVQ------L-ER 184 (571)
Q Consensus 126 ~~~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~-~~~~~~--~~~e~~l~~~---d~~~~-----~-~~~------~-~~ 184 (571)
+..|.||.-........ .-.+.|-.++.... ..+.+. .+.+...-.. ++... . ... . ..
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 77889997754321111 11232222222110 001110 0000000000 00000 0 000 0 00
Q ss_pred HHh-hCCCCC--CCCCcEEEcCccCCC----------CCCCC-----------------CCeeEEEEeCCCEEEEEEeec
Q 039250 185 QVL-ASGGAP--PPSNAYTINGHPGPN----------YNCSA-----------------NDVYKIEVVPGKTYLLRLINA 234 (571)
Q Consensus 185 ~~~-~~g~~~--~~~~~~~iNG~~~~~----------~~~~~-----------------~~~p~l~v~~G~~~rlRliNa 234 (571)
... ...... ...-.+.|||..... +..++ ...-.+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 000 000000 001145677765320 00000 011235667788888888886
Q ss_pred CccceEEEEEcCceeEEEEeCC-----------CCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecc
Q 039250 235 GLNMENFFAIANHKLTIVEADA-----------EYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPY 295 (571)
Q Consensus 235 ~~~~~~~~~i~gh~~~via~DG-----------~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~ 295 (571)
... .+.||||||.|+|++... ++..|...|++.+.++.-+-+-++++ +||.|.+|||..
T Consensus 428 ~~~-~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~ 497 (543)
T PLN02991 428 EDI-VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELW 497 (543)
T ss_pred CCC-CCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCcc
Confidence 543 556999999999998542 12358889999999999999999998 579999999984
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.12 E-value=7.5e-09 Score=113.04 Aligned_cols=233 Identities=12% Similarity=0.075 Sum_probs=135.3
Q ss_pred ceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEEEEEeCCCC-cceeEeecc
Q 039250 64 PVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTYEFTMFQQK-GTFFWHAHV 137 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~-Gt~wYH~H~ 137 (571)
++|.|++|+++++|+.|. ......++..|....... .||.+- +....|.||||++..+++.+.+ |.||.+.-.
T Consensus 203 ~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~ 281 (541)
T TIGR03388 203 QILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGV 281 (541)
T ss_pred eEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEec
Confidence 358999999999999998 456777777777655444 499652 3356699999999999994434 589998765
Q ss_pred ccccc--ceeeEEEEecCCCCCC-C------CCCCCc-----cEEEE-EeeEeec-cHHHHHHHH--hhCCCCCCCCCcE
Q 039250 138 SWLRG--TVYGAIVVYPKTGVPY-P------FQFPYQ-----EHIII-LGEYWLQ-DVVQLERQV--LASGGAPPPSNAY 199 (571)
Q Consensus 138 ~~~~~--Gl~G~liV~~~~~~~~-~------~~~~~~-----e~~l~-~~d~~~~-~~~~~~~~~--~~~g~~~~~~~~~ 199 (571)
.+... ....+++.+....... + .+..+. +..+. +...... ......... ...+........+
T Consensus 282 ~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 282 RGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred ccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 43311 1122444443211100 0 000000 00000 0000000 000000000 0000000001125
Q ss_pred EEcCccCCC-------------------------CCCC------------CCCeeEEEEeCCCEEEEEEeecCc-----c
Q 039250 200 TINGHPGPN-------------------------YNCS------------ANDVYKIEVVPGKTYLLRLINAGL-----N 237 (571)
Q Consensus 200 ~iNG~~~~~-------------------------~~~~------------~~~~p~l~v~~G~~~rlRliNa~~-----~ 237 (571)
.+||..... +.++ ....-.+.++.|+++.+.|.|.+. .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 667664310 0000 000124788899999999999753 3
Q ss_pred ceEEEEEcCceeEEEEeC-CCC-----------CCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 238 MENFFAIANHKLTIVEAD-AEY-----------TKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 238 ~~~~~~i~gh~~~via~D-G~~-----------~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
..+.||||||+|+|++.. |.+ ..|...|++.+.++.-+-|-++++ +||.|.+|||.....
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H~ 513 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPHL 513 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhhh
Confidence 456799999999999987 432 147788999999999999999998 479999999985443
No 33
>PLN02604 oxidoreductase
Probab=99.10 E-value=3.1e-09 Score=116.42 Aligned_cols=233 Identities=13% Similarity=0.103 Sum_probs=135.0
Q ss_pred ceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEEEEEeCCCCc-ceeEeecc
Q 039250 64 PVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTYEFTMFQQKG-TFFWHAHV 137 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~G-t~wYH~H~ 137 (571)
++|.+++|+++++|+.|. ......++..|......+ .||.+- +....|.||||++..+++++.+| .||-....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 589999999999999999 445677777776655444 599663 34567999999999999855455 79988653
Q ss_pred cccc-ccee-eEEEEecCCC--CCCCCCCC----CccEEEEEeeEe-e--------ccHHHHHHHH--hhCCCCCCCCCc
Q 039250 138 SWLR-GTVY-GAIVVYPKTG--VPYPFQFP----YQEHIIILGEYW-L--------QDVVQLERQV--LASGGAPPPSNA 198 (571)
Q Consensus 138 ~~~~-~Gl~-G~liV~~~~~--~~~~~~~~----~~e~~l~~~d~~-~--------~~~~~~~~~~--~~~g~~~~~~~~ 198 (571)
.... .-.. .+++.+.... ...+.... -.+....+.... . .......... ..........-.
T Consensus 303 ~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 382 (566)
T PLN02604 303 VSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRR 382 (566)
T ss_pred ccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeEE
Confidence 2211 0011 1333333211 10000000 000000000000 0 0000000000 000000000124
Q ss_pred EEEcCccCCC----------------CC-------------------CC---CCCeeEEEEeCCCEEEEEEeecCc----
Q 039250 199 YTINGHPGPN----------------YN-------------------CS---ANDVYKIEVVPGKTYLLRLINAGL---- 236 (571)
Q Consensus 199 ~~iNG~~~~~----------------~~-------------------~~---~~~~p~l~v~~G~~~rlRliNa~~---- 236 (571)
+.|||..... |+ ++ ....-.+.++.|+++.+.|.|...
T Consensus 383 w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (566)
T PLN02604 383 WSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNAN 462 (566)
T ss_pred EEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCC
Confidence 6667764311 00 00 001124788999999999999853
Q ss_pred -cceEEEEEcCceeEEEEeC-CCC-----------CCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 237 -NMENFFAIANHKLTIVEAD-AEY-----------TKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 237 -~~~~~~~i~gh~~~via~D-G~~-----------~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
...+.||+|||+|+|++.. |.+ ..|...|++.+.++.-+-|-++++ +||.|.+|||.....
T Consensus 463 ~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~Hl 536 (566)
T PLN02604 463 NSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESHF 536 (566)
T ss_pred CCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhHh
Confidence 3457799999999999987 432 147788999999999999999998 579999999985443
No 34
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.09 E-value=1.2e-08 Score=111.05 Aligned_cols=244 Identities=15% Similarity=0.114 Sum_probs=140.7
Q ss_pred eEEEECCcC---------------CCceEEEecCCEEEEEEEeCC-CCCeeEEecccc-cCCCCCCCCCCc----cccCc
Q 039250 53 DIVTVNNMF---------------PGPVVYAQEDDRIIVKVTNQS-PYNATIHWHGVR-QRLSCWFDGPAY----ITQCP 111 (571)
Q Consensus 53 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~-~~~~~~~DG~~~----~~q~~ 111 (571)
..+++||+. ..|+|++++|+++++|+.|.. .....++..|.. ..... .||.+- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 467899983 127899999999999999994 445677777655 33333 499752 33466
Q ss_pred CCCCCeEEEEEEeCCC-------CcceeEeeccccccc--ceeeEEEEecCCCCCCC---C-CC--C------CccEEEE
Q 039250 112 IQSGQTFTYEFTMFQQ-------KGTFFWHAHVSWLRG--TVYGAIVVYPKTGVPYP---F-QF--P------YQEHIII 170 (571)
Q Consensus 112 i~PG~~~~y~~~~~~~-------~Gt~wYH~H~~~~~~--Gl~G~liV~~~~~~~~~---~-~~--~------~~e~~l~ 170 (571)
|.||||++..+++++. +|-||-..-...... ...+.|..++......+ . +. . ..+..+.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999999532 488997764322111 12333333222111111 0 00 0 0011110
Q ss_pred -EeeEeec--cHHHHHHHH--hhCCCC--C-CCCCcEEEcCccCCC-----------CCC----------------CCCC
Q 039250 171 -LGEYWLQ--DVVQLERQV--LASGGA--P-PPSNAYTINGHPGPN-----------YNC----------------SAND 215 (571)
Q Consensus 171 -~~d~~~~--~~~~~~~~~--~~~g~~--~-~~~~~~~iNG~~~~~-----------~~~----------------~~~~ 215 (571)
+..-... ......... ...+.. . .....+++||..... +.. ....
T Consensus 331 pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (538)
T TIGR03390 331 PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDPE 410 (538)
T ss_pred ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCcC
Confidence 1000000 000000000 000000 0 011346788875421 000 0001
Q ss_pred eeEEEEeCCCEEEEEEeecC-------ccceEEEEEcCceeEEEEe-CCCC-----------CCeeEeceEEeC------
Q 039250 216 VYKIEVVPGKTYLLRLINAG-------LNMENFFAIANHKLTIVEA-DAEY-----------TKPFSTDRVMLG------ 270 (571)
Q Consensus 216 ~p~l~v~~G~~~rlRliNa~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~P~~~d~l~l~------ 270 (571)
.-.+.++.|+++.+.|.|.. ....+.||||||+|+|++. +|.+ ..|...|++.+.
T Consensus 411 ~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~ 490 (538)
T TIGR03390 411 TRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKV 490 (538)
T ss_pred ceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccccc
Confidence 12467888999999999975 2356779999999999995 4533 258889999984
Q ss_pred ----CCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 271 ----PGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 271 ----pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
++.-+-|-++++ +||.|.||||.....
T Consensus 491 ~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~H~ 521 (538)
T TIGR03390 491 VPGAPAGWRAWRIRVT-NPGVWMMHCHILQHM 521 (538)
T ss_pred cccCCCceEEEEEEcC-CCeeEEEeccchhhh
Confidence 778888889887 579999999985443
No 35
>PLN02168 copper ion binding / pectinesterase
Probab=99.08 E-value=1.2e-08 Score=110.42 Aligned_cols=239 Identities=13% Similarity=0.137 Sum_probs=143.0
Q ss_pred eeEEEECCcCC-CceEEEecCCEEEEEEEeCC-CCCeeEEecccccCCCCCCCCCC----ccccCcCCCCCeEEEEEEeC
Q 039250 52 KDIVTVNNMFP-GPVVYAQEDDRIIVKVTNQS-PYNATIHWHGVRQRLSCWFDGPA----YITQCPIQSGQTFTYEFTMF 125 (571)
Q Consensus 52 ~~~~~~Ng~~p-gP~i~v~~Gd~v~v~v~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~~q~~i~PG~~~~y~~~~~ 125 (571)
...+++||+.+ .|+|++++|+++++|+.|.. .....++..|....... .||.+ .+.+..|.||||++..++++
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 46689999952 48999999999999999994 44677777777655544 59965 23457799999999999995
Q ss_pred CCC-c---ceeEeecccc--cccceeeEEEEecCCCCC--CCCC---CC-Cc----cEEEEE----eeE-eeccHHH---
Q 039250 126 QQK-G---TFFWHAHVSW--LRGTVYGAIVVYPKTGVP--YPFQ---FP-YQ----EHIIIL----GEY-WLQDVVQ--- 181 (571)
Q Consensus 126 ~~~-G---t~wYH~H~~~--~~~Gl~G~liV~~~~~~~--~~~~---~~-~~----e~~l~~----~d~-~~~~~~~--- 181 (571)
++. | .||...-... ....-. +++..+..... .|.+ .. +. +....+ .-. .......
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGV-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceE-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 343 4 7998876521 111122 34444332110 1111 10 00 000000 000 0000000
Q ss_pred H----HHHHh-hCCCC--CCCCCcEEEcCccCCC----------CCC-----CC--C----------CeeEEEEeCCCEE
Q 039250 182 L----ERQVL-ASGGA--PPPSNAYTINGHPGPN----------YNC-----SA--N----------DVYKIEVVPGKTY 227 (571)
Q Consensus 182 ~----~~~~~-~~g~~--~~~~~~~~iNG~~~~~----------~~~-----~~--~----------~~p~l~v~~G~~~ 227 (571)
. ..... ..... ......+.|||..... +.. .+ . ..-.+.++.|+++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 0 00000 00000 0001246778875421 000 00 0 1234678889999
Q ss_pred EEEEeecCccceEEEEEcCceeEEEEe-----CC------CCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeec
Q 039250 228 LLRLINAGLNMENFFAIANHKLTIVEA-----DA------EYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGP 294 (571)
Q Consensus 228 rlRliNa~~~~~~~~~i~gh~~~via~-----DG------~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~ 294 (571)
.+=|-|.... .+.||||||.|+|++. |+ ++..|...|++.+.++.-+-|-++++ +||.|.+|||.
T Consensus 426 eiViqn~~~~-~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi 501 (545)
T PLN02168 426 HIVFQNPLFS-LESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQK 501 (545)
T ss_pred EEEEeCCCCC-CCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecC
Confidence 8888887643 5669999999999977 21 22468899999999999999999998 57999999996
No 36
>PLN02354 copper ion binding / oxidoreductase
Probab=99.06 E-value=1.3e-08 Score=110.70 Aligned_cols=241 Identities=13% Similarity=0.127 Sum_probs=145.1
Q ss_pred eeEEEECCcCC------CceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEE
Q 039250 52 KDIVTVNNMFP------GPVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTY 120 (571)
Q Consensus 52 ~~~~~~Ng~~p------gP~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y 120 (571)
...+++||+.. -|+|++++|++.++|+.|. ......+|..|....... .||++- +....|.||||++.
T Consensus 189 ~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 189 PDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEE
Confidence 35789999841 3899999999999999999 556777888887765444 599762 33467999999999
Q ss_pred EEEeCCCCcceeEeeccccc--ccceeeEEEEecCCCCC-CCCCCCCccE--EE-EEeeEee-------cc---HHHH--
Q 039250 121 EFTMFQQKGTFFWHAHVSWL--RGTVYGAIVVYPKTGVP-YPFQFPYQEH--II-ILGEYWL-------QD---VVQL-- 182 (571)
Q Consensus 121 ~~~~~~~~Gt~wYH~H~~~~--~~Gl~G~liV~~~~~~~-~~~~~~~~e~--~l-~~~d~~~-------~~---~~~~-- 182 (571)
.+++++.+|.||........ .....|.|..++..... ...+....+. .. ...+... .. ....
T Consensus 268 lv~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~ 347 (552)
T PLN02354 268 LVTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYG 347 (552)
T ss_pred EEECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCccccc
Confidence 99996668999998875321 11223333333321100 0011000000 00 0000000 00 0000
Q ss_pred -H--HHHh-hCCC--CCCCCCcEEEcCccCCC---------C-CCC-C-------------------CCeeEEEEeCCCE
Q 039250 183 -E--RQVL-ASGG--APPPSNAYTINGHPGPN---------Y-NCS-A-------------------NDVYKIEVVPGKT 226 (571)
Q Consensus 183 -~--~~~~-~~g~--~~~~~~~~~iNG~~~~~---------~-~~~-~-------------------~~~p~l~v~~G~~ 226 (571)
. .... .... .......+.|||..... + ... + ...-.+.++.|++
T Consensus 348 ~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~ 427 (552)
T PLN02354 348 KINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTF 427 (552)
T ss_pred cccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCE
Confidence 0 0000 0000 00001245677764310 0 000 0 0112457778899
Q ss_pred EEEEEeecCccceEEEEEcCceeEEEEeCC-----------CCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecc
Q 039250 227 YLLRLINAGLNMENFFAIANHKLTIVEADA-----------EYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPY 295 (571)
Q Consensus 227 ~rlRliNa~~~~~~~~~i~gh~~~via~DG-----------~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~ 295 (571)
+.+-|.|.... .+.||||||.|+|++.-- ++..|...|++.+.++.-+-+-++++ +||.|.+|||..
T Consensus 428 VeiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCHi~ 505 (552)
T PLN02354 428 VEIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSENW 505 (552)
T ss_pred EEEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeecccc
Confidence 99999987644 456999999999997642 12358899999999999999999998 579999999983
No 37
>PLN02191 L-ascorbate oxidase
Probab=98.93 E-value=7.1e-08 Score=105.67 Aligned_cols=231 Identities=11% Similarity=0.068 Sum_probs=132.7
Q ss_pred ceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCc----cccCcCCCCCeEEEEEEeCCCC-cceeEeecc
Q 039250 64 PVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAY----ITQCPIQSGQTFTYEFTMFQQK-GTFFWHAHV 137 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~----~~q~~i~PG~~~~y~~~~~~~~-Gt~wYH~H~ 137 (571)
++|.+++|++.++|+.|. ......++..|....... .||.+- +....|.||||++..+++.+.+ +.||-..-.
T Consensus 226 ~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~ 304 (574)
T PLN02191 226 QTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGV 304 (574)
T ss_pred eEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEc
Confidence 379999999999999999 556667777776655444 599763 3356799999999999995545 589988754
Q ss_pred cccc----cceeeEEEEe-cCCCCCCC------CCCCCc-----cEEE-EEeeEe-eccHHHHHHHH--hhCCCCCCCCC
Q 039250 138 SWLR----GTVYGAIVVY-PKTGVPYP------FQFPYQ-----EHII-ILGEYW-LQDVVQLERQV--LASGGAPPPSN 197 (571)
Q Consensus 138 ~~~~----~Gl~G~liV~-~~~~~~~~------~~~~~~-----e~~l-~~~d~~-~~~~~~~~~~~--~~~g~~~~~~~ 197 (571)
.... .++ +++-. .......+ .+..+. .... .+.... ........... ...........
T Consensus 305 ~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 382 (574)
T PLN02191 305 RGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQNLIDGYT 382 (574)
T ss_pred cccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccceeCCeE
Confidence 3311 132 33333 22111000 000000 0000 000000 00000000000 00000000011
Q ss_pred cEEEcCccCCCC-----------------------------C-CC-------CCCeeEEEEeCCCEEEEEEeecC-----
Q 039250 198 AYTINGHPGPNY-----------------------------N-CS-------ANDVYKIEVVPGKTYLLRLINAG----- 235 (571)
Q Consensus 198 ~~~iNG~~~~~~-----------------------------~-~~-------~~~~p~l~v~~G~~~rlRliNa~----- 235 (571)
.+.+||.+.... + +. ....-.+.++.|+++.+=|.|..
T Consensus 383 ~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~ 462 (574)
T PLN02191 383 KWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGV 462 (574)
T ss_pred EEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCC
Confidence 355666532100 0 00 00112456777999999888875
Q ss_pred ccceEEEEEcCceeEEEEeCCC------------CCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccccc
Q 039250 236 LNMENFFAIANHKLTIVEADAE------------YTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMSA 298 (571)
Q Consensus 236 ~~~~~~~~i~gh~~~via~DG~------------~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~~ 298 (571)
....+.||+|||+|+|++.... +..|...|++.+.++.-+-+-++++ +||.|.+|||.....
T Consensus 463 ~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~~Hl 536 (574)
T PLN02191 463 VSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIEPHL 536 (574)
T ss_pred CCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCchhhh
Confidence 2445679999999999976532 1257789999999999999999987 579999999985443
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.81 E-value=3e-08 Score=88.53 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=72.7
Q ss_pred CeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCC-----------CeeEeceEEeCCCceEEEEEEeCC
Q 039250 215 DVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYT-----------KPFSTDRVMLGPGQTVNVLVTADQ 283 (571)
Q Consensus 215 ~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-----------~P~~~d~l~l~pgeR~dv~v~~~~ 283 (571)
....+.++.|++++|+|.|.+.. .+.||+||+.|+|++.++... .|..+|++.+.+|+++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 45889999999999999998866 566999999999999999873 57899999999999999999998
Q ss_pred CCceeEEEeecccc
Q 039250 284 PIGKYSMAMGPYMS 297 (571)
Q Consensus 284 ~~g~~~i~~~~~~~ 297 (571)
.+|.|.+|||...-
T Consensus 110 ~~G~w~~HCHi~~H 123 (138)
T PF07731_consen 110 NPGPWLFHCHILEH 123 (138)
T ss_dssp STEEEEEEESSHHH
T ss_pred cceEEEEEEchHHH
Confidence 67999999998643
No 39
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.69 E-value=6.1e-08 Score=83.55 Aligned_cols=90 Identities=26% Similarity=0.331 Sum_probs=68.2
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC-
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN- 527 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn- 527 (571)
+++.++.|+.+++.+.|.. ...+.+|.||... ......|. . +..- .-.|+||+..+-+|+++.
T Consensus 26 PtI~v~~Gd~v~i~~~N~l---~~~~siH~HG~~~----~~~~~~DG--~------~~~~-~~~i~pG~~~~Y~~~~~~~ 89 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL---DEPTSIHWHGLHQ----PPSPWMDG--V------PGVT-QCPIAPGESFTYEFTANQQ 89 (117)
T ss_dssp EEEEEETTEEEEEEEEEES---SSGBSEEEETSBS----TTGGGGSG--G------TTTS-GSSBSTTEEEEEEEEESSC
T ss_pred CEEEEEcCCeeEEEEEecc---ccccccccceeee----eeeeecCC--c------cccc-ceeEEeecceeeeEeeecc
Confidence 6889999999999999974 4789999999763 00000010 0 0000 124889999999999998
Q ss_pred ceeeEEeeechhhhhcccEEEEEEeCC
Q 039250 528 PGVWFMHCHFDIHQSWGLGTVLIVKNG 554 (571)
Q Consensus 528 pG~w~~HCHil~H~d~GM~~~~~V~~~ 554 (571)
+|.|.||||...|...||.+.+.|.+.
T Consensus 90 ~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 90 AGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999999999988999999999764
No 40
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.66 E-value=3.4e-06 Score=92.16 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=137.7
Q ss_pred CcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEE-EeCCCCCCeeEeceEEeCCCceE
Q 039250 197 NAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIV-EADAEYTKPFSTDRVMLGPGQTV 275 (571)
Q Consensus 197 ~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~vi-a~DG~~~~P~~~d~l~l~pgeR~ 275 (571)
..++|||+. +.|.|+++.|+++++++.|... ....+|.||..+..- -.||. |. ..-.|.||+++
T Consensus 49 ~vi~vNGq~---------PGPtI~~~~GD~v~V~V~N~L~-~~ttIHWHGl~q~~t~w~DGv---~~--TQcPI~PG~sf 113 (596)
T PLN00044 49 EAIGINGQF---------PGPALNVTTNWNLVVNVRNALD-EPLLLTWHGVQQRKSAWQDGV---GG--TNCAIPAGWNW 113 (596)
T ss_pred EEEEEcCcC---------CCCcEEEECCCEEEEEEEeCCC-CCccEEECCccCCCCccccCC---CC--CcCCcCCCCcE
Confidence 478999993 4599999999999999999975 455689998765532 47995 33 34689999999
Q ss_pred EEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCCCCCCCCCCCCCccchhhhcccCccCCCCCCCcc
Q 039250 276 NVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSLNPVPVPKE 355 (571)
Q Consensus 276 dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~~~~~~l~~l~p~~~p~~ 355 (571)
..-+++++.+|+||.|+|..... .++..+ +++-+ +.... +.|...+.
T Consensus 114 tY~F~~~dq~GT~WYHsH~~~Q~----~~Gl~G-alII~-~~~~~--~~P~~~~~------------------------- 160 (596)
T PLN00044 114 TYQFQVKDQVGSFFYAPSTALHR----AAGGYG-AITIN-NRDVI--PIPFGFPD------------------------- 160 (596)
T ss_pred EEEEEeCCCCceeEeeccchhhh----hCcCee-EEEEc-Ccccc--cccccCCc-------------------------
Confidence 99999964579999999863211 122222 33333 22110 11100000
Q ss_pred CceEEEEEEeccccccCCCC-CCCcccCCCCceeEEeecceeecCCChhHHhhhhhccCcccccCCCCCCccccccCCCC
Q 039250 356 IDANLFVTIGLNVQKCRSGN-PQQNCRGLNNGVMAASMNNISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDFVNGA 434 (571)
Q Consensus 356 ~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~in~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~ 434 (571)
+++..+.++.=........ .........+......|||+. .+. ++...
T Consensus 161 -~~e~~i~l~DW~~~~~~~~~~~l~~g~~~~~~d~~lING~g------------------~~~----------~n~~~-- 209 (596)
T PLN00044 161 -GGDITLFIADWYARDHRALRRALDAGDLLGAPDGVLINAFG------------------PYQ----------YNDSL-- 209 (596)
T ss_pred -ccceEEEecccccCCHHHHHHHHhcCCCCCCCCceEEcccC------------------ccc----------cCCcc--
Confidence 0011111100000000000 000000000000011233321 000 00000
Q ss_pred CCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeC
Q 039250 435 PNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVP 514 (571)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vp 514 (571)
. .......++.++.|++++|+|.|.+. ...--|+|-||+|.||+... . +..|...|.+.|.
T Consensus 210 ------~-~~~~~~~~i~V~~Gk~yRlRiINaa~--~~~~~fsIdgH~mtVIa~DG-~---------~v~P~~vd~i~I~ 270 (596)
T PLN00044 210 ------V-PPGITYERINVDPGKTYRFRVHNVGV--ATSLNFRIQGHNLLLVEAEG-S---------YTSQQNYTNLDIH 270 (596)
T ss_pred ------c-cCCCccceEEECCCCEEEEEEEEccC--CceEEEEECCCEEEEEEeCC-c---------ccCceeeeeEEEc
Confidence 0 00011246889999999999999864 46788999999999999852 2 3457788999999
Q ss_pred CCcEEEEEEEecCc-e--eeE
Q 039250 515 VGGWAAIRFTADNP-G--VWF 532 (571)
Q Consensus 515 p~g~~~irf~adnp-G--~w~ 532 (571)
+|+...|.++++.+ | .|+
T Consensus 271 ~GQRydVLV~a~q~~~~~Y~i 291 (596)
T PLN00044 271 VGQSYSFLLTMDQNASTDYYV 291 (596)
T ss_pred CCceEEEEEECCCCCCCceEE
Confidence 99999999999975 5 576
No 41
>PRK02710 plastocyanin; Provisional
Probab=98.38 E-value=5.8e-06 Score=71.53 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=53.8
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecccccccc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRGT 143 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 143 (571)
+.|++++||+| +++|....++++.+.|.. +. ..+...+.||++++|.|+. +|+|-|+|-.|. .+|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~-~~~~~~~~pg~t~~~tF~~---~G~y~y~C~~H~-~~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------EL-SHKDLAFAPGESWEETFSE---AGTYTYYCEPHR-GAG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCc--------cc-cccccccCCCCEEEEEecC---CEEEEEEcCCCc-cCC
Confidence 89999999985 567887778888765421 11 0112357899999988864 899999998443 359
Q ss_pred eeeEEEEe
Q 039250 144 VYGAIVVY 151 (571)
Q Consensus 144 l~G~liV~ 151 (571)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 42
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.36 E-value=1.4e-06 Score=73.55 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=47.8
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecccc
Q 039250 60 MFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSW 139 (571)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~ 139 (571)
++-..+|++++|++|+|+++|.....+.+...++... ..|.||++.++.|+. .++|+|=|+|..++
T Consensus 31 ~f~P~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 31 GFSPSTITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHP 96 (104)
T ss_dssp EEES-EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-
T ss_pred eEecCEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCC
Confidence 4433799999999999999999877766666663322 468999999999987 99999999999776
Q ss_pred cccceeeEEEE
Q 039250 140 LRGTVYGAIVV 150 (571)
Q Consensus 140 ~~~Gl~G~liV 150 (571)
. |.|.|||
T Consensus 97 ~---m~G~liV 104 (104)
T PF13473_consen 97 N---MKGTLIV 104 (104)
T ss_dssp T---TB-----
T ss_pred c---ceecccC
Confidence 3 6677775
No 43
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=0.00017 Score=78.20 Aligned_cols=236 Identities=17% Similarity=0.177 Sum_probs=143.6
Q ss_pred CCcEEEcCccCCCCCCCCCCeeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEE-EEeCCCCCCeeEeceEEeCCCce
Q 039250 196 SNAYTINGHPGPNYNCSANDVYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTI-VEADAEYTKPFSTDRVMLGPGQT 274 (571)
Q Consensus 196 ~~~~~iNG~~~~~~~~~~~~~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~d~l~l~pgeR 274 (571)
...++|||+. +.|.|.++.|+++.++++|-. ...+.+|.||-...- --.||.++ ..=.|.|||.
T Consensus 47 ~~vi~iNG~f---------PGP~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~ 111 (563)
T KOG1263|consen 47 KQVITINGQF---------PGPTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGEN 111 (563)
T ss_pred ceeEeecCCC---------CCCeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCcc-----ccCCcCCCCe
Confidence 3478999993 459999999999999999995 477778888865432 33499433 2335789999
Q ss_pred EEEEEEeCCCCceeEEEeecccccCCCccCCcceEEEEEEcCCCCCCCCCCCCCCCCCCccchhhhcccCccCCCCCCCc
Q 039250 275 VNVLVTADQPIGKYSMAMGPYMSAQGVSFQNISAIAYFQYLGAQPNSLALPATLPRFNDNLAVKTVMDGLRSLNPVPVPK 354 (571)
Q Consensus 275 ~dv~v~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~p~~~~~~~~~~~~~~l~~l~p~~~p~ 354 (571)
+.--++.++..|+||-++|....... .+.+.|........ +.| .+
T Consensus 112 ~tY~F~v~~q~GT~~yh~h~~~~Ra~------G~~G~liI~~~~~~--p~p--------------------------f~- 156 (563)
T KOG1263|consen 112 FTYRFTVKDQIGTLWYHSHVSWQRAT------GVFGALIINPRPGL--PVP--------------------------FP- 156 (563)
T ss_pred EEEEEEeCCcceeEEEeecccccccc------CceeEEEEcCCccC--CCC--------------------------CC-
Confidence 99999999667999999987433321 12333333221110 011 00
Q ss_pred cCceEEEEEEeccccccCCCCCCCcccCCCCceeEEeec-ceeecCCChhHHhhhhhccCcccccCCCCCCccccccCCC
Q 039250 355 EIDANLFVTIGLNVQKCRSGNPQQNCRGLNNGVMAASMN-NISFIKPNVSVLEAYYKKIDGIFTEDFPEAPLKFYDFVNG 433 (571)
Q Consensus 355 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in-~~~~~~p~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~ 433 (571)
.+++++.+.++. |.-+ +. ..+ ...... .| ..+. +|..+..+|.
T Consensus 157 ~pd~E~~ill~d-----------------------W~~~~~~------~~l-~~~~~~-~~----~~p~-~~D~~~iNg~ 200 (563)
T KOG1263|consen 157 KPDKEFTILLGD-----------------------WYKNLNH------KNL-KNFLDR-TG----ALPN-PSDGVLINGR 200 (563)
T ss_pred CCCceeEEEeEe-----------------------eccccCH------HHH-HHhhcc-CC----CCCC-CCCceEECCC
Confidence 234444443321 3221 00 000 000000 00 0011 0111222221
Q ss_pred CCCCCCCCCCCCCCceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEe
Q 039250 434 APNNIPNDTNSMNGTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGV 513 (571)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~v 513 (571)
. .....|...+.+..|++..|+|.|.+.. ...+ |.+-+|++.|++.+. . ...|.--|++.|
T Consensus 201 ~-------g~~~~~~~~l~v~pGktY~lRiiN~g~~-~~l~-F~I~~H~ltvVe~Dg-~---------y~~p~~~~~l~i 261 (563)
T KOG1263|consen 201 S-------GFLYNCTPTLTVEPGKTYRLRIINAGLN-TSLN-FSIANHQLTVVEVDG-A---------YTKPFTTDSLDI 261 (563)
T ss_pred C-------CcccCceeEEEEcCCCEEEEEEEccccc-cceE-EEECCeEEEEEEecc-e---------EEeeeeeceEEE
Confidence 1 0123346788999999999999998753 3445 999999999999852 1 245667899999
Q ss_pred CCCcEEEEEEEecC-ce-eeEEeee
Q 039250 514 PVGGWAAIRFTADN-PG-VWFMHCH 536 (571)
Q Consensus 514 pp~g~~~irf~adn-pG-~w~~HCH 536 (571)
-+|+...+..+||. ++ .|+-=|=
T Consensus 262 ~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 262 HPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred cCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 99999999999984 44 4555443
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.21 E-value=6.7e-06 Score=68.71 Aligned_cols=82 Identities=11% Similarity=0.133 Sum_probs=55.1
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCcc--ccCcCCCCCeEEEEEEeCCCCcceeEeeccccc
Q 039250 63 GPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYI--TQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWL 140 (571)
Q Consensus 63 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~ 140 (571)
...|++++||+| +++|....++++..+........ .+..+.. +...+.||+++++.|.. +|+|.|+|. .+.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~-~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE-PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC-Ccc
Confidence 378999999986 55688667787777653221110 0111111 22457899999988754 899999998 333
Q ss_pred ccceeeEEEEe
Q 039250 141 RGTVYGAIVVY 151 (571)
Q Consensus 141 ~~Gl~G~liV~ 151 (571)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 45999999984
No 45
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.07 E-value=2.2e-05 Score=71.85 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=76.7
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
..++.++.|++++|.+.|.+. ...+.|++.||+|+||+..... ..|...|++.|.+|+.+.|.++++.
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~DG~~----------v~p~~~~~l~l~~G~R~dvlv~~~~ 126 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAADGVP----------VEPYKVDTLVLAPGQRYDVLVTADQ 126 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEETTEE----------EEEEEESBEEE-TTEEEEEEEEECS
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeecccc----------ccccccceEEeeCCeEEEEEEEeCC
Confidence 468899999999999999864 3589999999999999985321 2377899999999999999999997
Q ss_pred -ceeeEEee----echhhhhcccEEEEEEe
Q 039250 528 -PGVWFMHC----HFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 528 -pG~w~~HC----Hil~H~d~GM~~~~~V~ 552 (571)
+|.|.++| +...+...|+..-+.+-
T Consensus 127 ~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y 156 (159)
T PF00394_consen 127 PPGNYWIRASYQHDSINDPQNGNALAILRY 156 (159)
T ss_dssp CSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred CCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence 99999999 56677788887766654
No 46
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.06 E-value=1.4e-05 Score=66.83 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCC-CCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFD-GPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG 142 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~D-G~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 142 (571)
..|++++||+| ++.|....++++.+=--........+ ..+......+.||+++++.|+ .+|+|.|+|-. +..+
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 89999999985 56676666666655331100000000 000001235789999998887 78999999984 5556
Q ss_pred ceeeEEEEe
Q 039250 143 TVYGAIVVY 151 (571)
Q Consensus 143 Gl~G~liV~ 151 (571)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 47
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.05 E-value=3e-05 Score=69.53 Aligned_cols=89 Identities=19% Similarity=0.253 Sum_probs=59.5
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEE--EEeccCCCCCCCCCCCCCCCCcceeEEeCC---C--cEEEE
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYV--VGYGTGNYDPQTANFNLIDPPYMNTIGVPV---G--GWAAI 521 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~V--l~~~~g~~~~~~~~~~~~~p~~rDTv~vpp---~--g~~~i 521 (571)
+.+.++.|+.|++++.|... ...|.|-||.+.-.. .....| .|.....-.+|+ | ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~~p~mdG------------~~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPYMPGMDG------------LGFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCccccccccCC------------CCccccCcccCCCCCCccceeEE
Confidence 67889999999999999642 356777776432100 000000 011112222232 2 24688
Q ss_pred EEEecCceeeEEeeechhhhhcccEEEEEE
Q 039250 522 RFTADNPGVWFMHCHFDIHQSWGLGTVLIV 551 (571)
Q Consensus 522 rf~adnpG~w~~HCHil~H~d~GM~~~~~V 551 (571)
.|+++.+|.+.||||+..|...||.+.+.|
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 999999999999999999999999999987
No 48
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.90 E-value=7.5e-05 Score=60.15 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=51.9
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc
Q 039250 63 GPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG 142 (571)
Q Consensus 63 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 142 (571)
.+.|++++||+| ++.|....+++++..........+ ....+.||+++++.| .++|+|-|||-.|.
T Consensus 10 P~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~-------~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp--- 74 (83)
T TIGR02657 10 TPELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAAL-------KGPMMKKEQAYSLTF---TEAGTYDYHCTPHP--- 74 (83)
T ss_pred CCEEEECCCCEE--EEEECCCCCccEEecCCCCccccc-------cccccCCCCEEEEEC---CCCEEEEEEcCCCC---
Confidence 388999999996 467887778888876432111111 112357888877666 57899999998875
Q ss_pred ceeeEEEEe
Q 039250 143 TVYGAIVVY 151 (571)
Q Consensus 143 Gl~G~liV~ 151 (571)
.|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 488999885
No 49
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.62 E-value=0.00024 Score=76.86 Aligned_cols=98 Identities=20% Similarity=0.234 Sum_probs=69.4
Q ss_pred eecCCceeeEE--EECCcCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEE
Q 039250 45 VNKLCNAKDIV--TVNNMFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEF 122 (571)
Q Consensus 45 ~~~~g~~~~~~--~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~ 122 (571)
+.++|....++ ...-.|--+.|+|++||+|+++|+|.....=.+ ||..+... |+ ..-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 55667655544 445566447899999999999999963211111 66555432 11 14578999999999
Q ss_pred EeCCCCcceeEeecccc--cccceeeEEEEecC
Q 039250 123 TMFQQKGTFFWHAHVSW--LRGTVYGAIVVYPK 153 (571)
Q Consensus 123 ~~~~~~Gt~wYH~H~~~--~~~Gl~G~liV~~~ 153 (571)
++ +++|+|||||..-. .-.+|.|.++|+++
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 99 99999999998732 23489999999864
No 50
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.58 E-value=0.0013 Score=60.68 Aligned_cols=102 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred eEEEECCcCCC-ceEEEecCCEEEEEEEeCCCCCeeEE--eccccc--CCCCCCCCCC----c-----cccCcCCCCCeE
Q 039250 53 DIVTVNNMFPG-PVVYAQEDDRIIVKVTNQSPYNATIH--WHGVRQ--RLSCWFDGPA----Y-----ITQCPIQSGQTF 118 (571)
Q Consensus 53 ~~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~~iH--~HG~~~--~~~~~~DG~~----~-----~~q~~i~PG~~~ 118 (571)
..+-|||..-| ++|.+..|-+|.|+|+|...-++++- --+..+ ...-..||.. | .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47789998877 89999999999999999955444432 222111 1112236522 1 122468899999
Q ss_pred EEEEEeCCCCcceeEeecccccc-cceeeEEEEecCCC
Q 039250 119 TYEFTMFQQKGTFFWHAHVSWLR-GTVYGAIVVYPKTG 155 (571)
Q Consensus 119 ~y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 155 (571)
.-.|.. -++|+|||-|-..+.. +||++-|+|...-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877755 6799999999997765 49999999987644
No 51
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.48 E-value=0.00051 Score=57.32 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=57.8
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|+|+ |.+ ...|-+.++...+..-. .. .......+++.+.||....+.|.. |
T Consensus 17 ~~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~pG~t~~~tF~~--~ 77 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPAGV---KE---------LAKSLSHKDLLNSPGESYEVTFST--P 77 (99)
T ss_pred CEEEECCCCEEEEE--ECC---CCCceEEECCCCCccch---hh---------hcccccccccccCCCCEEEEEeCC--C
Confidence 46789999999987 432 26788777644321100 00 011123467888999998887665 9
Q ss_pred eeeEEeeechhhhhcccEEEEEEe
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
|.|.|||- -|..+||.+.+.|.
T Consensus 78 G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 78 GTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred EEEEEEcC--CccccCCEEEEEEC
Confidence 99999998 89999999999873
No 52
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.43 E-value=0.0015 Score=58.83 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=69.7
Q ss_pred EEEECCcCCC-ceEEEecCCEEEEEEEeCCCCCeeEEec--ccccC--CCCCCCCCC----ccc-----cCcCCCCCeEE
Q 039250 54 IVTVNNMFPG-PVVYAQEDDRIIVKVTNQSPYNATIHWH--GVRQR--LSCWFDGPA----YIT-----QCPIQSGQTFT 119 (571)
Q Consensus 54 ~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~~iH~H--G~~~~--~~~~~DG~~----~~~-----q~~i~PG~~~~ 119 (571)
.+-|||+..| ++|-+..|-+|.|+|+|....++++-.- +-..+ +....||.. |.+ -..|.+|++..
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~s 153 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRS 153 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeE
Confidence 3678898888 8999999999999999997666555441 11001 011136633 222 13466788855
Q ss_pred EEEEeCCCCcceeEeecccccc-cceeeEEEEecCCC
Q 039250 120 YEFTMFQQKGTFFWHAHVSWLR-GTVYGAIVVYPKTG 155 (571)
Q Consensus 120 y~~~~~~~~Gt~wYH~H~~~~~-~Gl~G~liV~~~~~ 155 (571)
-.|.. -++|+|||-|-.-+.. +||+|.+||-..-.
T Consensus 154 g~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 154 GWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred EEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 55555 7999999999987654 59999999976543
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.38 E-value=0.0011 Score=56.73 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=48.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEe-cccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHW-HGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG 142 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 142 (571)
..|+|++||+|+....|. ++++.+ .+. .+ +|... ..-.+|+++++.| +.+|+|=|+|-.|. .+
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~----~p--~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH~-~~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGM----IP--EGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPHY-GM 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCC----Cc--CCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCCc-cC
Confidence 789999999966665553 455444 121 11 33221 1223566655555 57899999998553 34
Q ss_pred ceeeEEEEecCC
Q 039250 143 TVYGAIVVYPKT 154 (571)
Q Consensus 143 Gl~G~liV~~~~ 154 (571)
||.|.++|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 54
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.17 E-value=0.0022 Score=55.43 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=54.0
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecccccccc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRGT 143 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~G 143 (571)
-.|+|++||+ |+++|.....++++.-+.. .. +|.- .....+|+++++.| ..+|+|-|+|-.|.- +|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tf---e~~G~Y~Y~C~PH~~-~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTF---ETPGEYTYYCTPHPG-MG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEe---cccceEEEEeccCCC-CC
Confidence 5899999999 7788987778888776654 11 2221 23344567777766 458999999977633 39
Q ss_pred eeeEEEEec
Q 039250 144 VYGAIVVYP 152 (571)
Q Consensus 144 l~G~liV~~ 152 (571)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 55
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.16 E-value=0.0033 Score=53.65 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=49.8
Q ss_pred ceEEEecCCEEEEEEEeC-CCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccccc
Q 039250 64 PVVYAQEDDRIIVKVTNQ-SPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRG 142 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~-l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~ 142 (571)
..|+|++||+|+ ++|. ...++++..-+ ...| | .......||++|++.| .++|+|=|+|-.|. ..
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf---~~~G~Y~Y~C~pH~-~~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTF---EEPGIYLYVCVPHE-AL 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEe---cCCcEEEEEccCCC-CC
Confidence 789999999955 6654 44667765321 1111 2 1112357899998888 46899999998763 24
Q ss_pred ceeeEEEEe
Q 039250 143 TVYGAIVVY 151 (571)
Q Consensus 143 Gl~G~liV~ 151 (571)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 899999984
No 56
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.06 E-value=0.0029 Score=55.09 Aligned_cols=60 Identities=20% Similarity=0.443 Sum_probs=48.3
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|+.|+|++.|.+ ...|.+-++++.+ ...++||+..+++|.++.|
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~gi--------------------------s~~I~pGet~TitF~adKp 111 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKS---PISEGFSIDAYGI--------------------------SEVIKAGETKTISFKADKA 111 (135)
T ss_pred CEEEECCCCEEEEEEEeCC---CCccceEECCCCc--------------------------ceEECCCCeEEEEEECCCC
Confidence 4578999999999999864 3567766665421 2468889999999999999
Q ss_pred eeeEEeeec
Q 039250 529 GVWFMHCHF 537 (571)
Q Consensus 529 G~w~~HCHi 537 (571)
|.|.|||-+
T Consensus 112 G~Y~y~C~~ 120 (135)
T TIGR03096 112 GAFTIWCQL 120 (135)
T ss_pred EEEEEeCCC
Confidence 999999964
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.56 E-value=0.018 Score=47.96 Aligned_cols=83 Identities=22% Similarity=0.325 Sum_probs=55.0
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|.|+..+. ..|.+.+=- .+ .... .... ..+..-.+..+.+|....+.|. .+
T Consensus 17 ~~i~V~~G~tV~~~n~~~-----~~Hnv~~~~-------~~---~~~~-~~~~-~~~~~~~~~~~~~G~~~~~tF~--~~ 77 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-----MPHNVVFVA-------DG---MPAG-ADSD-YVPPGDSSPLLAPGETYSVTFT--KP 77 (99)
T ss_dssp SEEEEETTEEEEEEEESS-----SSBEEEEET-------TS---SHTT-GGHC-HHSTTCEEEEBSTTEEEEEEEE--SS
T ss_pred CEEEECCCCEEEEEECCC-----CCceEEEec-------cc---cccc-cccc-ccCccccceecCCCCEEEEEeC--CC
Confidence 567899999999977632 566655432 11 0000 0000 0011115677888888777776 99
Q ss_pred eeeEEeeechhhhhcccEEEEEEe
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
|.|.|+|- - |...||-+.++|+
T Consensus 78 G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 78 GTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp EEEEEEET-T-TGGTTSEEEEEEE
T ss_pred eEEEEEcC-C-CcccCCEEEEEEC
Confidence 99999999 5 9999999999884
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.45 E-value=0.015 Score=48.95 Aligned_cols=62 Identities=19% Similarity=0.339 Sum_probs=40.8
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|+.+.+++.|.+. ..|-|.+-+. +.+ ..++||+..++.|.++.|
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~-------------------------~~~-~~l~~g~~~~~~f~~~~~ 85 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDS---RPHEFVIPDL-------------------------GIS-KVLPPGETATVTFTPLKP 85 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SS---S-EEEEEGGG-------------------------TEE-EEE-TT-EEEEEEEE-S-
T ss_pred CEEEEcCCCeEEEEEEECCC---CcEEEEECCC-------------------------ceE-EEECCCCEEEEEEcCCCC
Confidence 46789999999999999752 3444444441 122 688999999999999999
Q ss_pred eeeEEeeechh
Q 039250 529 GVWFMHCHFDI 539 (571)
Q Consensus 529 G~w~~HCHil~ 539 (571)
|.|-|+|-+-.
T Consensus 86 G~y~~~C~~~~ 96 (104)
T PF13473_consen 86 GEYEFYCTMHP 96 (104)
T ss_dssp EEEEEB-SSS-
T ss_pred EEEEEEcCCCC
Confidence 99999999444
No 59
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.35 E-value=0.017 Score=62.92 Aligned_cols=78 Identities=23% Similarity=0.432 Sum_probs=59.5
Q ss_pred EEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCce
Q 039250 450 TKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNPG 529 (571)
Q Consensus 450 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 529 (571)
.+.++.|+.|.+++.|.....+..|-|-+-++.. -..+.||....+.|+++.||
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI--------------------------~~dv~PG~t~svtF~adkPG 609 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV--------------------------NMEVAPQATASVTFTADKPG 609 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeecccCc--------------------------cEEEcCCceEEEEEEcCCCE
Confidence 4678999999999999542235678777755432 13567899999999999999
Q ss_pred eeEEeeechhhh-hcccEEEEEEeC
Q 039250 530 VWFMHCHFDIHQ-SWGLGTVLIVKN 553 (571)
Q Consensus 530 ~w~~HCHil~H~-d~GM~~~~~V~~ 553 (571)
.|.+||...-|. +.+|.+.+.|.+
T Consensus 610 vy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 610 VYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred EEEEECCcccccCcccceEEEEEEe
Confidence 999999885443 348999888864
No 60
>PRK02710 plastocyanin; Provisional
Probab=96.09 E-value=0.031 Score=48.29 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=51.0
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|+|+ |.+ ...|.+.+.+... + ..+| ..+.+|....+.|.. |
T Consensus 47 ~~i~v~~Gd~V~~~--N~~---~~~H~v~~~~~~~---------~------------~~~~-~~~~pg~t~~~tF~~--~ 97 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNK---LAPHNAVFDGAKE---------L------------SHKD-LAFAPGESWEETFSE--A 97 (119)
T ss_pred CEEEEcCCCEEEEE--ECC---CCCceEEecCCcc---------c------------cccc-cccCCCCEEEEEecC--C
Confidence 45788999999986 432 2578876543211 0 0111 346788887766665 9
Q ss_pred eeeEEeeechhhhhcccEEEEEEe
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
|.|.|+|= .|...||-+.+.|+
T Consensus 98 G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 98 GTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEEEcC--CCccCCcEEEEEEC
Confidence 99999997 89999999999883
No 61
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.50 E-value=0.063 Score=45.92 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.5
Q ss_pred EEEEecCceeeEEeeechhhhhcccEEEEEEeCCCCCCC
Q 039250 521 IRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNGKGELE 559 (571)
Q Consensus 521 irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~ 559 (571)
+.++++.+|.+-|+|= .|...||-+.++|.++....+
T Consensus 58 ~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~~n~~ 94 (116)
T TIGR02375 58 YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPPANLD 94 (116)
T ss_pred EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCCcCHH
Confidence 5566688999999998 999999999999988643333
No 62
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.099 Score=46.30 Aligned_cols=94 Identities=13% Similarity=0.146 Sum_probs=62.7
Q ss_pred EEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCce
Q 039250 450 TKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNPG 529 (571)
Q Consensus 450 ~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnpG 529 (571)
...++.|++++.++.|.+. ..|=|=+= ++....+ .+.- .....-..---..++.|.||....+-+.+.++|
T Consensus 64 ~~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~~--~~~~-~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g 134 (158)
T COG4454 64 SFEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNLE--HVTH-MILADDMEHDDPNTVTLAPGKSGELVVVFTGAG 134 (158)
T ss_pred cccccCCcEEeeeecCccc---ceEEEecc---Cccccch--hHHH-hhhCCccccCCcceeEeCCCCcEEEEEEecCCc
Confidence 3456789999999998653 34433332 1111111 0000 000000011234689999999999999999999
Q ss_pred eeEEeeechhhhhcccEEEEEEe
Q 039250 530 VWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 530 ~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
.+-|-|-|-+|-+.||-+.++|.
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999884
No 63
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=93.88 E-value=0.36 Score=41.41 Aligned_cols=88 Identities=9% Similarity=0.032 Sum_probs=55.7
Q ss_pred CCceEEEec-CCEEEEEEEeCCCCCeeEEecccccCCCCC--------------CCCCCcc------ccCcCCCCCeEEE
Q 039250 62 PGPVVYAQE-DDRIIVKVTNQSPYNATIHWHGVRQRLSCW--------------FDGPAYI------TQCPIQSGQTFTY 120 (571)
Q Consensus 62 pgP~i~v~~-Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~--------------~DG~~~~------~q~~i~PG~~~~y 120 (571)
-=..|.|.+ |.+|+|+|.|....+-..--|-+-.....- .|=+|.. ....|.|||+.+.
T Consensus 14 d~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~sv 93 (125)
T TIGR02695 14 NTKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSV 93 (125)
T ss_pred cccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEE
Confidence 336899998 589999999984433222222111100000 0112210 1234889999999
Q ss_pred EEEeCC-CCcc-eeEeecccccccceeeEEE
Q 039250 121 EFTMFQ-QKGT-FFWHAHVSWLRGTVYGAIV 149 (571)
Q Consensus 121 ~~~~~~-~~Gt-~wYH~H~~~~~~Gl~G~li 149 (571)
.|+++. ++|+ |-|-|-..+..+.|.|.+.
T Consensus 94 tF~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 94 TFDVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred EEECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 999853 6886 9999999888778888875
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.24 E-value=1.5 Score=38.99 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=62.8
Q ss_pred cCCCceEEEecCCEEEEEEEeCC--CCCeeE---------EecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCC
Q 039250 60 MFPGPVVYAQEDDRIIVKVTNQS--PYNATI---------HWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQK 128 (571)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~v~N~l--~~~~~i---------H~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~ 128 (571)
.+++-.+.++.|++++..+.|.. ....++ -.|...... +++- ......+.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 45777899999999999999983 222222 122222221 1221 1122569999999999999 899
Q ss_pred cceeEeeccccccc-ceeeEEEEec
Q 039250 129 GTFFWHAHVSWLRG-TVYGAIVVYP 152 (571)
Q Consensus 129 Gt~wYH~H~~~~~~-Gl~G~liV~~ 152 (571)
|.|-.-|-..+.++ ||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 99999999988875 9999998853
No 65
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.54 E-value=1.1 Score=38.76 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=49.7
Q ss_pred CceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecccc--c
Q 039250 63 GPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSW--L 140 (571)
Q Consensus 63 gP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~--~ 140 (571)
.+.|.+..|++|++++++. +.-+++...++.. +.-+-||......|++ +++|+|++.|..-- .
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~-------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~g 109 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI-------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAG 109 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE-------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTT
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc-------------ccccccccceeeeeee-ccCCcEEEcCccccCcC
Confidence 3789999999999999995 3333333333221 2346789999999999 99999999997531 1
Q ss_pred ccceeeEEEE
Q 039250 141 RGTVYGAIVV 150 (571)
Q Consensus 141 ~~Gl~G~liV 150 (571)
.+.|.|-++|
T Consensus 110 H~~M~~~v~V 119 (120)
T PF00116_consen 110 HSFMPGKVIV 119 (120)
T ss_dssp GGG-EEEEEE
T ss_pred cCCCeEEEEE
Confidence 2356666655
No 66
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=92.33 E-value=0.99 Score=41.93 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=60.6
Q ss_pred CceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCC---------CCCcceeEEeCCCc
Q 039250 447 GTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLI---------DPPYMNTIGVPVGG 517 (571)
Q Consensus 447 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~---------~p~~rDTv~vpp~g 517 (571)
+.-.+.++.|-.|.+++.|.+. +.| .|-|+..+...... .....+ .+.--..=-+++|.
T Consensus 84 G~m~i~VPAGw~V~i~f~N~~~---l~H-------nl~iv~~~~~~p~~--~~i~~DgkIl~~~G~s~~~~~~~GI~~G~ 151 (196)
T PF06525_consen 84 GQMTIYVPAGWNVQITFTNQES---LPH-------NLVIVQNDTPTPNN--PPISSDGKILLYVGASPGNYTSNGISSGQ 151 (196)
T ss_pred CcEEEEEcCCCEEEEEEEcCCC---CCe-------eEEEEeCCCCCCCc--cccCCCCceeeeccCCCCccccCCccCCc
Confidence 4467889999999999999642 555 56777554211110 001000 01000001233555
Q ss_pred EEEEEEEecCceeeEEeeechhhhhcccEEEEEEeCC
Q 039250 518 WAAIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNG 554 (571)
Q Consensus 518 ~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 554 (571)
....-+..-.+|.+.+=|=+.-|...||-..|.|.+.
T Consensus 152 s~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 152 SASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred eeeEEEccCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence 5555555557999999999999999999999999754
No 67
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=91.95 E-value=0.97 Score=36.11 Aligned_cols=72 Identities=17% Similarity=0.197 Sum_probs=45.2
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|.|+ |.. ...|-.+++.-.+ +.. .+.. ..+.++.... ++++.|
T Consensus 11 ~~i~v~~GdtVt~~--N~d---~~~Hnv~~~~g~~-------~~~------------~~~~-~~~~~g~~~~--~tf~~~ 63 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NRE---AMPHNVHFVAGVL-------GEA------------ALKG-PMMKKEQAYS--LTFTEA 63 (83)
T ss_pred CEEEECCCCEEEEE--ECC---CCCccEEecCCCC-------ccc------------cccc-cccCCCCEEE--EECCCC
Confidence 45788999999985 432 2678887653221 000 0111 1234555444 566889
Q ss_pred eeeEEeeechhhhhcccEEEEEE
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIV 551 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V 551 (571)
|.|.|||=+ |- +|-+.+.|
T Consensus 64 G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 64 GTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred EEEEEEcCC--CC--CCeEEEEE
Confidence 999999986 55 58888877
No 68
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=91.90 E-value=1.4 Score=40.25 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=59.3
Q ss_pred CceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCC-CCC----CCCCCC--CCCCcceeEEeCCCcEE
Q 039250 447 GTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNY-DPQ----TANFNL--IDPPYMNTIGVPVGGWA 519 (571)
Q Consensus 447 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~-~~~----~~~~~~--~~p~~rDTv~vpp~g~~ 519 (571)
+...+.++.|-.|.+++.|.. .++| .+-++..+...- .+. .+.++. ..+..-..=-+.+|...
T Consensus 83 G~mtIyiPaGw~V~V~f~N~e---~~pH-------nl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~ 152 (195)
T TIGR03094 83 GAMTIYLPAGWNVYVTFTNYE---SLPH-------NLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSR 152 (195)
T ss_pred CceEEEEeCCCEEEEEEEcCC---CCCc-------cEEEecCCCCCCCccccccCceeEeecccccCcccccccccccee
Confidence 557888999999999999964 3554 445555432100 000 000000 00000000112345555
Q ss_pred EEEEEecCceeeEEeeechhhhhcccEEEEEEeCC
Q 039250 520 AIRFTADNPGVWFMHCHFDIHQSWGLGTVLIVKNG 554 (571)
Q Consensus 520 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 554 (571)
.+.+..-.||.+-+=|-+.-|...||-..+.|-..
T Consensus 153 sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 153 SGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred EEEeccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 55666668999999999999999999999988643
No 69
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=91.50 E-value=1.2 Score=38.01 Aligned_cols=74 Identities=19% Similarity=0.311 Sum_probs=47.8
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|.|+.++.. ..|-.. +.+.+.|+. ......+|....+. ++.|
T Consensus 42 ~~ltV~~GdTVtw~~~~d~----~~HnV~---------s~~~~~f~s-------------~~~~~~~G~t~s~T--f~~~ 93 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGEG----GGHNVV---------SDGDGDLDE-------------SERVSEEGTTYEHT--FEEP 93 (115)
T ss_pred CEEEECCCCEEEEEECCCC----CCEEEE---------ECCCCCccc-------------cccccCCCCEEEEE--ecCC
Confidence 4578899999999765421 345442 222223321 01123455555544 4789
Q ss_pred eeeEEeeechhhhhcccEEEEEEe
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
|.+-|+|= .|...||-+.+.|.
T Consensus 94 G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 94 GIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred cEEEEEcc--CCCCCCCEEEEEEC
Confidence 99999998 89999999999883
No 70
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=91.18 E-value=3.4 Score=35.65 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=55.5
Q ss_pred CceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEec
Q 039250 447 GTRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTAD 526 (571)
Q Consensus 447 ~~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~ad 526 (571)
..+.+.++.|+.+.+.+.+.. ..|.|.+-....+ +.+.||....+.|+++
T Consensus 44 ~~~~l~lp~g~~v~~~ltS~D----ViHsf~ip~~~~k--------------------------~d~~PG~~~~~~~~~~ 93 (120)
T PF00116_consen 44 TDNELVLPAGQPVRFHLTSED----VIHSFWIPELGIK--------------------------MDAIPGRTNSVTFTPD 93 (120)
T ss_dssp BSSEEEEETTSEEEEEEEESS----S-EEEEETTCTEE--------------------------EEEBTTCEEEEEEEES
T ss_pred ccceecccccceEeEEEEcCC----ccccccccccCcc--------------------------cccccccceeeeeeec
Confidence 346788999999999999853 6788877655431 3567889999999999
Q ss_pred CceeeEEeeechhhh-hcccEEEEEE
Q 039250 527 NPGVWFMHCHFDIHQ-SWGLGTVLIV 551 (571)
Q Consensus 527 npG~w~~HCHil~H~-d~GM~~~~~V 551 (571)
.||.+-..|..+=.. +..|...++|
T Consensus 94 ~~G~y~~~C~e~CG~gH~~M~~~v~V 119 (120)
T PF00116_consen 94 KPGTYYGQCAEYCGAGHSFMPGKVIV 119 (120)
T ss_dssp SSEEEEEEE-SSSSTTGGG-EEEEEE
T ss_pred cCCcEEEcCccccCcCcCCCeEEEEE
Confidence 999999999887644 4456666655
No 71
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=88.23 E-value=5.5 Score=41.34 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=53.9
Q ss_pred cCCCceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCC-ccccCcCCCCCeEEEEEEeCCCCcceeEeeccc
Q 039250 60 MFPGPVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPA-YITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVS 138 (571)
Q Consensus 60 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~-~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~ 138 (571)
++--..+.++.|+ +++.|+|....++.+-.- +|+- ....-.|.||.+..+.+++ .+|+|=|+|-.+
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~ 106 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL 106 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC
Confidence 4544799999996 899999997666443111 1110 0011469999999887766 599999999443
Q ss_pred ccccceeeEEEEecCC
Q 039250 139 WLRGTVYGAIVVYPKT 154 (571)
Q Consensus 139 ~~~~Gl~G~liV~~~~ 154 (571)
..+.|.|+|.+..
T Consensus 107 ---~~~~g~l~Vtg~~ 119 (375)
T PRK10378 107 ---TNPKGKLIVKGEA 119 (375)
T ss_pred ---CCCCceEEEeCCC
Confidence 3347899998653
No 72
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.01 E-value=4.5 Score=38.32 Aligned_cols=77 Identities=21% Similarity=0.241 Sum_probs=56.7
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|+.|++.+.+.. ..|.|.+-+... . ...-||....+.|+++.|
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~-----------------------k---~da~PG~~~~~~~~~~~~ 166 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPELGG-----------------------K---IDAIPGQYNALWFNADEP 166 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhcccccccCc-----------------------e---EEecCCcEEEEEEEeCCC
Confidence 4678999999999998753 456555433211 1 345578999999999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNGK 555 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~~ 555 (571)
|.+...|-..-.. +..|...++|.+++
T Consensus 167 G~y~~~c~e~cG~~h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 167 GVYYGYCAELCGAGHSLMLFKVVVVERE 194 (201)
T ss_pred EEEEEEehhhCCcCccCCeEEEEEECHH
Confidence 9999999984433 47888888887543
No 73
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=83.68 E-value=10 Score=30.20 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=35.8
Q ss_pred EEEEEeecCccceEEEEEc-CceeE--EEEeCCCCC------Ce--eEeceEEeCCCceEEEEEEeCCC---CceeEEEe
Q 039250 227 YLLRLINAGLNMENFFAIA-NHKLT--IVEADAEYT------KP--FSTDRVMLGPGQTVNVLVTADQP---IGKYSMAM 292 (571)
Q Consensus 227 ~rlRliNa~~~~~~~~~i~-gh~~~--via~DG~~~------~P--~~~d~l~l~pgeR~dv~v~~~~~---~g~~~i~~ 292 (571)
..|++.|.+. ..+.|.+. |+++. |...+|..+ +. .......|.|||...+-.+.+.. ||.|.+.+
T Consensus 4 ~~l~v~N~s~-~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 4 FTLTVTNNSD-EPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp EEEEEEE-SS-S-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred EEEEEEeCCC-CeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 5677888884 44456664 55444 444466554 11 23468899999999998888863 69998864
No 74
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=82.95 E-value=2.9 Score=33.34 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=30.5
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCc---cccCcCCCCCeEEEEEEeCCC---CcceeE
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAY---ITQCPIQSGQTFTYEFTMFQQ---KGTFFW 133 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~---~~q~~i~PG~~~~y~~~~~~~---~Gt~wY 133 (571)
=+|+..-|++..+.|.|...+. + -.|++|... +.+..|+|||+.+|++..+.. +|+|..
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 3555556666666666542221 1 135677553 335679999999999999633 688754
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=79.75 E-value=12 Score=32.31 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=52.1
Q ss_pred eeEEEEeC-CCEEEEEEeecCccc----eEEEEEc-CceeEEEE-------eCCCCCCe----eEeceEEeCCCceEEEE
Q 039250 216 VYKIEVVP-GKTYLLRLINAGLNM----ENFFAIA-NHKLTIVE-------ADAEYTKP----FSTDRVMLGPGQTVNVL 278 (571)
Q Consensus 216 ~p~l~v~~-G~~~rlRliNa~~~~----~~~~~i~-gh~~~via-------~DG~~~~P----~~~d~l~l~pgeR~dv~ 278 (571)
...|+|++ ++.+++.|-|.|... .+++-|- .-.++-++ .|-.|+++ +...+=.|.+||..+|-
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 46799998 488999999998543 2333331 11222222 24455633 24567789999999999
Q ss_pred EEeCC-CCc-eeEEEeec
Q 039250 279 VTADQ-PIG-KYSMAMGP 294 (571)
Q Consensus 279 v~~~~-~~g-~~~i~~~~ 294 (571)
++++. .+| +|.+.|.-
T Consensus 95 F~~~~l~~g~~Y~f~CSF 112 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSF 112 (125)
T ss_pred EECCCCCCCCcceEEEcC
Confidence 99863 346 59999975
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=76.72 E-value=9.4 Score=36.15 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=54.9
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccc-c-cc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVS-W-LR 141 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~-~-~~ 141 (571)
..|.+..|+.|++++++.. .+ ||..++.. |+ +.-+-||..-+..|++ +++|+|...|..- | ..
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VI--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hh--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999852 12 55555432 11 2446689998889988 9999999998752 1 22
Q ss_pred cceeeEEEEecCC
Q 039250 142 GTVYGAIVVYPKT 154 (571)
Q Consensus 142 ~Gl~G~liV~~~~ 154 (571)
+.|.+-++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 4688888887654
No 77
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=74.67 E-value=17 Score=31.61 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=46.3
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|++|+|+... ...|-.+.=+-. .|...+++..-.+... ..+++-|
T Consensus 54 A~v~v~pGDTVtw~~~d-----~~~Hnv~~~~~~---------------------~~~g~~~~~~~~~~s~--~~Tfe~~ 105 (128)
T COG3794 54 AEVTVKPGDTVTWVNTD-----SVGHNVTAVGGM---------------------DPEGSGTLKAGINESF--THTFETP 105 (128)
T ss_pred cEEEECCCCEEEEEECC-----CCCceEEEeCCC---------------------CcccccccccCCCcce--EEEeccc
Confidence 45688999999997653 135655432221 1111222222223444 4445559
Q ss_pred eeeEEeeechhhhhcccEEEEEEe
Q 039250 529 GVWFMHCHFDIHQSWGLGTVLIVK 552 (571)
Q Consensus 529 G~w~~HCHil~H~d~GM~~~~~V~ 552 (571)
|.+-|.|- .|.-+||-+.+.|.
T Consensus 106 G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 106 GEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred ceEEEEec--cCCCCCcEEEEEeC
Confidence 99999995 69999999999885
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=72.89 E-value=15 Score=36.02 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=55.4
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccc-c-cc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVS-W-LR 141 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~-~-~~ 141 (571)
..|.+..|.+|+++++=. +.-+++...++.. +.-.-||...+..+++ +++|+|.-+|+.- | .-
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~-------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG-------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCc-------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 889999999999988765 3333333333322 2345688888888888 9999999998863 2 23
Q ss_pred cceeeEEEEecCCC
Q 039250 142 GTVYGAIVVYPKTG 155 (571)
Q Consensus 142 ~Gl~G~liV~~~~~ 155 (571)
+.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 47999999987763
No 79
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=69.61 E-value=21 Score=34.99 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=56.1
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|+.|++.+.... .-|.|.+-+-.+ -+.+-||-.....++++.|
T Consensus 137 n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l~~--------------------------k~d~iPG~~~~~~~~~~~~ 186 (247)
T COG1622 137 NELVLPVGRPVRFKLTSAD----VIHSFWIPQLGG--------------------------KIDAIPGMTTELWLTANKP 186 (247)
T ss_pred ceEEEeCCCeEEEEEEech----hceeEEecCCCc--------------------------eeeecCCceEEEEEecCCC
Confidence 5678899999999998643 556555444332 2345577888899999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNGK 555 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~~ 555 (571)
|.|-.+|+.+-=. +..|-..+.|.+.+
T Consensus 187 G~Y~g~Cae~CG~gH~~M~~~v~vvs~~ 214 (247)
T COG1622 187 GTYRGICAEYCGPGHSFMRFKVIVVSQE 214 (247)
T ss_pred eEEEEEcHhhcCCCcccceEEEEEEcHH
Confidence 9999999998744 45676777776543
No 80
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=69.30 E-value=5.8 Score=41.42 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=48.2
Q ss_pred ceEEEecCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccc--ccc
Q 039250 64 PVVYAQEDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVS--WLR 141 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~--~~~ 141 (571)
-++.|+.||.|.+.++|---....+ ||.-.+. -|+. ..+.|-++-.|.|.+ +.+|.+||.|--. ...
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 4678889999998888874333333 3332221 1221 457788888888988 8899999886432 122
Q ss_pred cceeeEEEEe
Q 039250 142 GTVYGAIVVY 151 (571)
Q Consensus 142 ~Gl~G~liV~ 151 (571)
+-|.|-++|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 3456666665
No 81
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=59.20 E-value=69 Score=30.15 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=55.8
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
..+.++.|+.+++.+... +..|.|.+-.... .+| .-||-...+.+.++.|
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-----------------------k~d---~~PG~~~~~~~~~~~~ 165 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-----------------------KMD---AIPGRINHLFFCPDRH 165 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-----------------------eee---cCCCceEEEEEEcCCC
Confidence 457789999999999864 3667766644321 223 3478889999999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNG 554 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~ 554 (571)
|.+-.-|.-+-=. +..|-..++|.++
T Consensus 166 G~y~g~C~e~CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 166 GVFVGYCSELCGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEEEEeehhhCcCcccCcEEEEEEcC
Confidence 9999999987644 5667777777654
No 82
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=59.15 E-value=70 Score=25.65 Aligned_cols=63 Identities=14% Similarity=0.200 Sum_probs=41.6
Q ss_pred CceEEEe---cCCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEe
Q 039250 63 GPVVYAQ---EDDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWH 134 (571)
Q Consensus 63 gP~i~v~---~Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH 134 (571)
.|.+.++ ....|+|+|.|....+..+........ .+.+ .+..|+||++.+..|.+.... -||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~~--~~~~v~ag~~~~~~w~l~~s~--gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGGP--WTYTVAAGQTVSLTWPLAASG--GWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCCC--EEEEECCCCEEEEEEeecCCC--CcEE
Confidence 4555554 245899999999888777776652211 1222 357799999999999883223 3555
No 83
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=58.47 E-value=92 Score=24.92 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=40.4
Q ss_pred EEeCCCEEE--EEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceE-EeCCCceEEEEEEeCC-CCceeEEEeecc
Q 039250 220 EVVPGKTYL--LRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRV-MLGPGQTVNVLVTADQ-PIGKYSMAMGPY 295 (571)
Q Consensus 220 ~v~~G~~~r--lRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l-~l~pgeR~dv~v~~~~-~~g~~~i~~~~~ 295 (571)
.+..|+.++ +.+.|.|....-.+.+. +-.||..+ ....| .|.||+...+-+.... .+|.|.+.+...
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 566777764 77889986654333332 33455432 44455 8899999888887764 468888887654
No 84
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=55.47 E-value=69 Score=32.88 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.5
Q ss_pred cCcCCCCCeEEEEEEe
Q 039250 109 QCPIQSGQTFTYEFTM 124 (571)
Q Consensus 109 q~~i~PG~~~~y~~~~ 124 (571)
..+|+|||+.+.+..+
T Consensus 337 ~~pI~PGETr~v~v~a 352 (399)
T TIGR03079 337 QSAIAPGETVEVKMEA 352 (399)
T ss_pred CCCcCCCcceEEEEEE
Confidence 4689999999999988
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=54.93 E-value=3e+02 Score=29.52 Aligned_cols=180 Identities=13% Similarity=0.219 Sum_probs=99.1
Q ss_pred EEEecCCE--EEEEEEeC--CCCCeeEEeccccc-CCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeeccccc
Q 039250 66 VYAQEDDR--IIVKVTNQ--SPYNATIHWHGVRQ-RLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWL 140 (571)
Q Consensus 66 i~v~~Gd~--v~v~v~N~--l~~~~~iH~HG~~~-~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~ 140 (571)
+.+.++++ +.|++.|+ .++...+-.-|+.- ....+-+|---++...+.|||+.+....+-++.- .
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~n----------a 347 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLN----------A 347 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCC----------C
Confidence 45556665 67888888 44556666666531 1111235666677788999999998888721100 0
Q ss_pred ccceeeEEEEecCCCCCCCCCCCCccEEEEEeeEeeccHHHHHHHHhhCCCCCCCCCcEEEcCccCCCCCCCCCCeeEEE
Q 039250 141 RGTVYGAIVVYPKTGVPYPFQFPYQEHIIILGEYWLQDVVQLERQVLASGGAPPPSNAYTINGHPGPNYNCSANDVYKIE 220 (571)
Q Consensus 141 ~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~~~~~~~~~~~~p~l~ 220 (571)
..|.|-..|+-.... ...++.++.+.- .|. .....-+-||. ..++
T Consensus 348 ~pG~Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~--~~~~v~l~~g~------------~~lt 392 (513)
T COG1470 348 TPGTYNVTITASSSS------GVTRELPLKIKN---------------TGS--YNELVKLDNGP------------YRLT 392 (513)
T ss_pred CCCceeEEEEEeccc------cceeeeeEEEEe---------------ccc--cceeEEccCCc------------EEEE
Confidence 124444444432221 123444444411 110 01112233444 5678
Q ss_pred EeCCCE--EEEEEeecCccc--eEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceE--EEEEEeCC--CCceeEEEe
Q 039250 221 VVPGKT--YLLRLINAGLNM--ENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTV--NVLVTADQ--PIGKYSMAM 292 (571)
Q Consensus 221 v~~G~~--~rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~--dv~v~~~~--~~g~~~i~~ 292 (571)
+.+|+- .+++|-|.|+.. .+.+.+.+-+=+=+.+|+..+ + .|.||+|- ++-++++. .+|+|.+..
T Consensus 393 ~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 393 ITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence 888854 689999999554 345666665556666666522 2 34566664 44455543 368998887
Q ss_pred ecccc
Q 039250 293 GPYMS 297 (571)
Q Consensus 293 ~~~~~ 297 (571)
....+
T Consensus 466 ~~ksD 470 (513)
T COG1470 466 TAKSD 470 (513)
T ss_pred EEeec
Confidence 76544
No 86
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=51.89 E-value=1e+02 Score=23.30 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=37.1
Q ss_pred eeEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEee
Q 039250 216 VYKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMG 293 (571)
Q Consensus 216 ~p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~ 293 (571)
...++++.|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+.+. .+|+|.|++.
T Consensus 4 ~y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 4 YYSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 467899999999888877764 223556666654332111111 01122233334444 4699999864
No 87
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.31 E-value=71 Score=30.88 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=56.5
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
.+.+.++.|+.|++.+.+.. ..|.|.+-.... . +..-||....+.+.++.
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~-----------------------k---~d~~Pg~~~~~~~~~~~ 188 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGV-----------------------K---VDAIPGRLNQLSFEPKR 188 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCc-----------------------e---eECCCCcceeEEEEeCC
Confidence 35678999999999998753 566655533221 1 34457888889999999
Q ss_pred ceeeEEeeechhhh-hcccEEEEEEeCC
Q 039250 528 PGVWFMHCHFDIHQ-SWGLGTVLIVKNG 554 (571)
Q Consensus 528 pG~w~~HCHil~H~-d~GM~~~~~V~~~ 554 (571)
||.+...|.-+-.. +..|-..++|.+.
T Consensus 189 ~g~y~~~C~e~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 189 PGVFYGQCSEICGANHSFMPIVVEAVPL 216 (228)
T ss_pred CEEEEEECccccCcCcCCCeEEEEEECH
Confidence 99999999988765 5667777777654
No 88
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=48.41 E-value=58 Score=26.46 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=41.4
Q ss_pred EEeCCCEEEEEEe--ecCccceEEEEEcCc--eeEEEEeCCCCCCeeEeceE-EeCCCceEEEEEEeCCC--CceeEEEe
Q 039250 220 EVVPGKTYLLRLI--NAGLNMENFFAIANH--KLTIVEADAEYTKPFSTDRV-MLGPGQTVNVLVTADQP--IGKYSMAM 292 (571)
Q Consensus 220 ~v~~G~~~rlRli--Na~~~~~~~~~i~gh--~~~via~DG~~~~P~~~d~l-~l~pgeR~dv~v~~~~~--~g~~~i~~ 292 (571)
.-+|||++.+|++ +... .. -...+. .++|..-+|..+ ..... .......++.-+..++. .|.|.|++
T Consensus 10 iYrPGetV~~~~~~~~~~~-~~--~~~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDN-DF--KPPANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp EE-TTSEEEEEEEEEEECT-TC--SCESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CcCCCCEEEEEEEEecccc-cc--ccccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 4679999999998 6652 11 112223 355555556422 33333 45677888888888764 49999998
Q ss_pred ecc
Q 039250 293 GPY 295 (571)
Q Consensus 293 ~~~ 295 (571)
...
T Consensus 84 ~~~ 86 (99)
T PF01835_consen 84 KTD 86 (99)
T ss_dssp EET
T ss_pred EEc
Confidence 763
No 89
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=48.39 E-value=1.7e+02 Score=24.76 Aligned_cols=37 Identities=11% Similarity=0.283 Sum_probs=21.7
Q ss_pred ceeEEEEeCCCCC--CeeEeceEEeCCCceEEEEEEeCC
Q 039250 247 HKLTIVEADAEYT--KPFSTDRVMLGPGQTVNVLVTADQ 283 (571)
Q Consensus 247 h~~~via~DG~~~--~P~~~d~l~l~pgeR~dv~v~~~~ 283 (571)
+++++...++... .++....+.|.+|..|.+.+.-..
T Consensus 45 ~~i~v~~~g~~~~~~~~l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 45 YTIEVTPAGTTPDVSTPLLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEEEEEECCCCCccceEEEeccEEEcCCCEEEEEEECCC
Confidence 4555544444322 245566777777777777776543
No 90
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=48.30 E-value=1.2e+02 Score=25.24 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=43.1
Q ss_pred EEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecccccccceeeEEEEecC
Q 039250 75 IVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHVSWLRGTVYGAIVVYPK 153 (571)
Q Consensus 75 ~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~~~~~~Gl~G~liV~~~ 153 (571)
.|+++|.|.....|..|=-.. |.-.|. ..+.||+++...|.. .--|+--|.|+..........-+.|...
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~------d~Dlg~--~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSK------DDDLGW--HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCC------CccCCC--EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEEec
Confidence 488999986555555544321 222222 458999999999987 5557777788876522123555666543
No 91
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=47.68 E-value=80 Score=24.50 Aligned_cols=64 Identities=25% Similarity=0.394 Sum_probs=30.5
Q ss_pred eCCCEE--EEEEeecCccc--eEEEEEcCceeEEEEeCCCCC--CeeEeceEEeCCCceEEEEEEeC--C--CCceeEEE
Q 039250 222 VPGKTY--LLRLINAGLNM--ENFFAIANHKLTIVEADAEYT--KPFSTDRVMLGPGQTVNVLVTAD--Q--PIGKYSMA 291 (571)
Q Consensus 222 ~~G~~~--rlRliNa~~~~--~~~~~i~gh~~~via~DG~~~--~P~~~d~l~l~pgeR~dv~v~~~--~--~~g~~~i~ 291 (571)
.+|+.. .+.+-|.+... ...+++. .=+|-.+ .|.... .|.||+...+-++.. . .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 456654 57788887543 2334433 2233221 233333 889998876665554 2 36999887
Q ss_pred eec
Q 039250 292 MGP 294 (571)
Q Consensus 292 ~~~ 294 (571)
...
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 92
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=46.50 E-value=85 Score=28.48 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=51.8
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|..+++.+... +..|.|.+-.-.. . +..-||-...+.+.++.|
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-----------------------K---~DavPGr~n~l~~~~~~~ 122 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-----------------------K---ADAIPGRLHKINTFILRE 122 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc-----------------------e---eeccCCceEEEEEecCCC
Confidence 456789999999999864 3567665543321 1 233467778889999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKN 553 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~ 553 (571)
|.+...|.-+-=. +..|-..++|.+
T Consensus 123 G~y~gqCsElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 123 GVFYGQCSEMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred eEEEEEcchhcCcCccCceEEEEEeC
Confidence 9999999876533 344666666654
No 93
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=45.24 E-value=66 Score=31.08 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=54.5
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|+.+++.+.... ..|. |+|=+-+ ..+|.+ ||-...+.|+++.|
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~----------------~K~Dai---PG~~n~~~~~~~~~ 188 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNS-------FFIPQLG----------------SQIYAM---AGMQTKLHLIANEP 188 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhh-------hhhhhcC----------------CeeecC---CCceEEEEEEeCCC
Confidence 4568899999999998753 4555 4443332 134444 68888899999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNGK 555 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~~ 555 (571)
|.|.-.|--.-=. +..|...++|.+++
T Consensus 189 G~y~g~CaE~CG~~Ha~M~~~V~v~~~~ 216 (226)
T TIGR01433 189 GVYDGISANYSGPGFSGMKFKAIATDRA 216 (226)
T ss_pred EEEEEEchhhcCcCccCCeEEEEEECHH
Confidence 9999999765533 46677777776543
No 94
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=44.93 E-value=67 Score=31.04 Aligned_cols=63 Identities=13% Similarity=0.200 Sum_probs=46.4
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
..+.+..|+.+|+++-..... |.|.| |...-....-||..-.+-+++++ +|.|...|..+.
T Consensus 139 nel~lP~g~pV~~~ltS~DVi---------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~~-~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM---------NSFFI---------PQLGSQIYAMAGMQTKLHLIANE-PGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECchh---------hhhhh---------hhcCCeeecCCCceEEEEEEeCC-CEEEEEEchhhc
Confidence 467888899888888766532 44444 54455566669999999999886 699999998764
Q ss_pred cc
Q 039250 297 SA 298 (571)
Q Consensus 297 ~~ 298 (571)
..
T Consensus 200 G~ 201 (226)
T TIGR01433 200 GP 201 (226)
T ss_pred Cc
Confidence 44
No 95
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=43.88 E-value=31 Score=29.28 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=29.1
Q ss_pred EEEEeCCCCC---eeEEecccccCCCC---CCCCCCccccCcCCCCCeEEEEEEeC--CCCcc
Q 039250 76 VKVTNQSPYN---ATIHWHGVRQRLSC---WFDGPAYITQCPIQSGQTFTYEFTMF--QQKGT 130 (571)
Q Consensus 76 v~v~N~l~~~---~~iH~HG~~~~~~~---~~DG~~~~~q~~i~PG~~~~y~~~~~--~~~Gt 130 (571)
|++.|....+ .+=|||=-...+.. ..+||-| .|-.|+||++|+|.=-.+ .+.|+
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVG-eQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVG-EQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceec-cccccCCCCceEEcCCcCccCCcce
Confidence 5566664433 34577743322111 0144443 367899999999965442 34444
No 96
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=41.45 E-value=2.1e+02 Score=25.65 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=34.2
Q ss_pred eEEEecCCEEEEEEEeCCC---CCeeEEecccccC------CCCCCCCCCcc-----ccCcCCCCCeEEEEEEeC
Q 039250 65 VVYAQEDDRIIVKVTNQSP---YNATIHWHGVRQR------LSCWFDGPAYI-----TQCPIQSGQTFTYEFTMF 125 (571)
Q Consensus 65 ~i~v~~Gd~v~v~v~N~l~---~~~~iH~HG~~~~------~~~~~DG~~~~-----~q~~i~PG~~~~y~~~~~ 125 (571)
.=..++|.+..|.+.=... ....--.||+..- +....||-... -.||+.+||.++|.+.++
T Consensus 49 pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slp 123 (158)
T KOG4063|consen 49 PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLP 123 (158)
T ss_pred ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEee
Confidence 3446677766665544322 2222333444322 11123654433 459999999999999884
No 97
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=41.05 E-value=61 Score=33.32 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=11.2
Q ss_pred cCcCCCCCeEEEEEEe
Q 039250 109 QCPIQSGQTFTYEFTM 124 (571)
Q Consensus 109 q~~i~PG~~~~y~~~~ 124 (571)
..||+|||+.+.+..+
T Consensus 318 ~~pI~PGETrtl~V~a 333 (381)
T PF04744_consen 318 NSPIAPGETRTLTVEA 333 (381)
T ss_dssp -S-B-TT-EEEEEEEE
T ss_pred CCCcCCCceEEEEEEe
Confidence 3589999999999998
No 98
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=40.15 E-value=2.1e+02 Score=26.90 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=43.8
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccc
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMS 297 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 297 (571)
.+.+..|+++|+++..... .+.|.+.+ ..-.+..-||..-.+-+.+++ +|.|...|..+-.
T Consensus 117 ~l~lp~g~~v~~~ltS~DV--iHsf~vp~----------------l~~k~d~~PG~~~~~~~~~~~-~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSDV--IHSFSVPD----------------LNLKMDAIPGRINHLFFCPDR-HGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCcc--ccceeccc----------------cCceeecCCCceEEEEEEcCC-CEEEEEEeehhhC
Confidence 4789999999999876553 23333332 223455568999999998875 6999999987654
Q ss_pred c
Q 039250 298 A 298 (571)
Q Consensus 298 ~ 298 (571)
.
T Consensus 178 ~ 178 (194)
T MTH00047 178 V 178 (194)
T ss_pred c
Confidence 4
No 99
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=39.98 E-value=34 Score=27.83 Aligned_cols=48 Identities=19% Similarity=0.347 Sum_probs=27.4
Q ss_pred EEEEEEeecCccceEEEEEcCceeEEEEeCCCCC--C--eeEeceEEeCCCceEE
Q 039250 226 TYLLRLINAGLNMENFFAIANHKLTIVEADAEYT--K--PFSTDRVMLGPGQTVN 276 (571)
Q Consensus 226 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~--~--P~~~d~l~l~pgeR~d 276 (571)
.|++||-|.+.. .+.|-...+.|...||... + .+....=.|.|||.+.
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~ 66 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFE 66 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEE
Confidence 478999999976 3667777777777777422 0 1122344677887544
No 100
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=39.46 E-value=63 Score=28.13 Aligned_cols=48 Identities=17% Similarity=0.335 Sum_probs=32.3
Q ss_pred EEEEEEeecCccceEEEEEcCceeEEEEeCCCCC----CeeEeceEEeCCCceEE
Q 039250 226 TYLLRLINAGLNMENFFAIANHKLTIVEADAEYT----KPFSTDRVMLGPGQTVN 276 (571)
Q Consensus 226 ~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~----~P~~~d~l~l~pgeR~d 276 (571)
.|++||.|.+.. ...|-...+.+...||... ..+....=.|.|||.+.
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~ 83 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFE 83 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeE
Confidence 478999998854 3677788888888887532 12333455677777654
No 101
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=38.72 E-value=2e+02 Score=24.90 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=42.3
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCC-------CeeEeceEEeCCCceEEEEEEeCCC
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYT-------KPFSTDRVMLGPGQTVNVLVTADQP 284 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-------~P~~~d~l~l~pgeR~dv~v~~~~~ 284 (571)
.|.+..-..|+|++...+ ...|.|+|..+ |+.++..- .+....++.|..|++++|-|...+.
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 367766678999998443 45678888765 55665432 3456678899999999998887643
No 102
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=38.40 E-value=1.7e+02 Score=33.24 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=43.7
Q ss_pred CCceEEEec---CCEEEEEEEeCCCCCeeEEecccccCCCCCCCCCCccccCcCCCCCeEEEEEEeCCCCcceeEeecc
Q 039250 62 PGPVVYAQE---DDRIIVKVTNQSPYNATIHWHGVRQRLSCWFDGPAYITQCPIQSGQTFTYEFTMFQQKGTFFWHAHV 137 (571)
Q Consensus 62 pgP~i~v~~---Gd~v~v~v~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~q~~i~PG~~~~y~~~~~~~~Gt~wYH~H~ 137 (571)
+.|.++++. ...|+|+|.|.......+|..-.... ++.| ....|+||.+.+..|.+ ...+ -||---+
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y~-----~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDLtV 661 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAYG-----GAGP--RTVTVAPGQRVELHWDL-SASG-GWYDFTV 661 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCCC-----CCCC--EEEEECCCCEEEEEEec-cCCC-CceEEEE
Confidence 446676644 44699999999888888877632111 2222 13678999999988877 3333 5776443
No 103
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.54 E-value=1.1e+02 Score=29.67 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=45.2
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
..+.+..|+++|+++.+.... |.|.| |...-.+..-||..-.+.+++++ +|.|...|..+-
T Consensus 140 n~l~lP~~~~v~~~~ts~DVi---------Hsf~i---------p~~~~k~d~~Pg~~~~~~~~~~~-~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADVI---------HSWTV---------PSLGVKVDAIPGRLNQLSFEPKR-PGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCccc---------cceec---------cccCceeECCCCcceeEEEEeCC-CEEEEEECcccc
Confidence 468999999999999885532 34444 32233455668999999998875 699999998764
Q ss_pred cc
Q 039250 297 SA 298 (571)
Q Consensus 297 ~~ 298 (571)
..
T Consensus 201 G~ 202 (228)
T MTH00140 201 GA 202 (228)
T ss_pred Cc
Confidence 43
No 104
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=37.53 E-value=29 Score=28.68 Aligned_cols=34 Identities=18% Similarity=0.116 Sum_probs=27.7
Q ss_pred eeEEEECCcCCCceEEEecCCEEEEEEEeCCCCC
Q 039250 52 KDIVTVNNMFPGPVVYAQEDDRIIVKVTNQSPYN 85 (571)
Q Consensus 52 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~ 85 (571)
.--+.+||+.-=|.=.|+.||.|+|++.|..-..
T Consensus 33 ~GrV~vNG~~aKpS~~VK~GD~l~i~~~~~~~~v 66 (100)
T COG1188 33 GGRVKVNGQRAKPSKEVKVGDILTIRFGNKEFTV 66 (100)
T ss_pred CCeEEECCEEcccccccCCCCEEEEEeCCcEEEE
Confidence 3345799998789999999999999999985433
No 105
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=37.20 E-value=90 Score=29.89 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=46.4
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
..+.+..|+.+|+++-.+... |.|.| |.-.-....-||..-.+-+++++ +|.|...|..+.
T Consensus 130 n~l~iP~g~~v~~~ltS~DVi---------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~~-~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADTM---------TSFWI---------PQLGGQKYAMTGMTMNWYLQADQ-VGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCchh---------hhhhc---------hhhCceeecCCCceEEEEEEeCC-CEEEEEEehhhc
Confidence 457888899888888766632 44444 55555566669999999999885 699999998764
Q ss_pred cc
Q 039250 297 SA 298 (571)
Q Consensus 297 ~~ 298 (571)
..
T Consensus 191 G~ 192 (217)
T TIGR01432 191 GE 192 (217)
T ss_pred Cc
Confidence 43
No 106
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=36.30 E-value=2.1e+02 Score=25.37 Aligned_cols=64 Identities=25% Similarity=0.387 Sum_probs=45.0
Q ss_pred CEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCee-------EeceEEeCCCceE-EEEEEeCCCCceeEEEee
Q 039250 225 KTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPF-------STDRVMLGPGQTV-NVLVTADQPIGKYSMAMG 293 (571)
Q Consensus 225 ~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~-------~~d~l~l~pgeR~-dv~v~~~~~~g~~~i~~~ 293 (571)
.+|.|-+-|.|... +.++...++|+ +||+.+.|. ..+.+.|.|||-. ++.+.-. ..|.-.+...
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCcceEEEEE
Confidence 46889999999654 57788888886 899888553 2357889999988 6666544 2354445443
No 107
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=33.26 E-value=2.6e+02 Score=23.98 Aligned_cols=62 Identities=10% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCC-CeeEeceEEeCCCceEEEEEEeCCC
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYT-KPFSTDRVMLGPGQTVNVLVTADQP 284 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~-~P~~~d~l~l~pgeR~dv~v~~~~~ 284 (571)
.|.+.....|+|.+...+ ...|.|+|.. |++.++..- .+.....+.|..|+++.|.|...+.
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~~ 113 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFEA 113 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEeC
Confidence 355555556888885433 3557888763 444443322 2233456888888888888877543
No 108
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=33.22 E-value=1.1e+02 Score=26.47 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=40.1
Q ss_pred EEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCC
Q 039250 228 LLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQP 284 (571)
Q Consensus 228 rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~ 284 (571)
.|-|-|.+....+.+ .+..-...||.+++.+...-+.|.|-+..+++|+-++.
T Consensus 28 tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~ 80 (125)
T PF11322_consen 28 TLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDT 80 (125)
T ss_pred EEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEecccC
Confidence 455666665555433 34555677899999999999999999999999987653
No 109
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.51 E-value=1.7e+02 Score=28.45 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=55.1
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
.+.+.++.|+.+++.+... +.-|.|.+-.-.. .+|. -||-...+.|.++.
T Consensus 150 ~n~lvlP~~~~v~~~~tS~----DViHsf~iP~lgv-----------------------K~Da---iPG~~n~~~~~~~~ 199 (240)
T MTH00023 150 DNRLVVPINTHVRILVTGA----DVLHSFAVPSLGL-----------------------KIDA---VPGRLNQTGFFIKR 199 (240)
T ss_pred CceEEEecCCEEEEEEEcC----CcccceeecccCc-----------------------eeec---CCCcceeEEEEcCC
Confidence 3567899999999999864 3667666544322 2333 36777788999999
Q ss_pred ceeeEEeeechhhh-hcccEEEEEEeCC
Q 039250 528 PGVWFMHCHFDIHQ-SWGLGTVLIVKNG 554 (571)
Q Consensus 528 pG~w~~HCHil~H~-d~GM~~~~~V~~~ 554 (571)
||.+.-.|.-+--. +.-|-..++|.+.
T Consensus 200 ~G~y~g~C~e~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 200 PGVFYGQCSEICGANHSFMPIVIEAVSL 227 (240)
T ss_pred CEEEEEEchhhcCcCccCCeEEEEEECH
Confidence 99999999877755 4557677766654
No 110
>PRK13202 ureB urease subunit beta; Reviewed
Probab=31.84 E-value=1.4e+02 Score=24.79 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred eEEEecC--CEEEEEEEeCCCCCee--EEecccccCCCCCCCC---------CCccccCcCCCCCeEEEEEE
Q 039250 65 VVYAQED--DRIIVKVTNQSPYNAT--IHWHGVRQRLSCWFDG---------PAYITQCPIQSGQTFTYEFT 123 (571)
Q Consensus 65 ~i~v~~G--d~v~v~v~N~l~~~~~--iH~HG~~~~~~~~~DG---------~~~~~q~~i~PG~~~~y~~~ 123 (571)
.|++++| ++++++|+|..+.|.- -|+|=......--.|= .|.-|..-..||++.+-+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 83 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV 83 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE
Confidence 4899999 5899999999887654 5777666544332232 33334455677777766553
No 111
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=31.45 E-value=1.7e+02 Score=28.05 Aligned_cols=77 Identities=13% Similarity=-0.021 Sum_probs=53.1
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|+.|++.+.+.. ..|. |+|=+-+ ..+|.+ ||-...+.|+++.|
T Consensus 130 n~l~iP~g~~v~~~ltS~D----ViHs-------f~vP~l~----------------~k~dai---PG~~~~~~~~~~~~ 179 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD----TMTS-------FWIPQLG----------------GQKYAM---TGMTMNWYLQADQV 179 (217)
T ss_pred CcEEEECCCEEEEEEECCc----hhhh-------hhchhhC----------------ceeecC---CCceEEEEEEeCCC
Confidence 3467889999999998643 4454 4442221 134544 78888999999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNGK 555 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~~ 555 (571)
|.|--.|=-+-=. +.-|...++|.+++
T Consensus 180 G~y~g~Cae~CG~~Hs~M~~~v~v~~~~ 207 (217)
T TIGR01432 180 GTYRGRNANFNGEGFADQTFDVNAVSEK 207 (217)
T ss_pred EEEEEEehhhcCccccCCeEEEEEeCHH
Confidence 9999999755433 45677777776543
No 112
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=30.69 E-value=2e+02 Score=27.73 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=54.6
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
.+.+.++.|+.+++.+.+.. ..|.|.+-+... . +..-||....+.|.++.
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~vP~~~~-----------------------k---~daiPG~~~~~~~~~~~ 188 (228)
T MTH00008 139 DNRAVLPMQTEIRVLVTAAD----VIHSWTVPSLGV-----------------------K---VDAVPGRLNQIGFTITR 188 (228)
T ss_pred CceEEEecCCEEEEEEEeCC----ccccccccccCc-----------------------c---eecCCCceEEEEEEeCC
Confidence 35678899999999999753 555554443322 1 23347888889999999
Q ss_pred ceeeEEeeechhhh-hcccEEEEEEeCC
Q 039250 528 PGVWFMHCHFDIHQ-SWGLGTVLIVKNG 554 (571)
Q Consensus 528 pG~w~~HCHil~H~-d~GM~~~~~V~~~ 554 (571)
||.+.--|.-+-.. +.-|-..++|.+.
T Consensus 189 ~G~~~g~Cse~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 189 PGVFYGQCSEICGANHSFMPIVLEAVDT 216 (228)
T ss_pred CEEEEEEChhhcCcCccCceeEEEEECH
Confidence 99999999877655 4556666666543
No 113
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.61 E-value=1.9e+02 Score=27.97 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=43.4
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
-.+.+..|+.+|+++.+... . |.|.+ |...-.+..-||..-.+.+.+++ +|.|...|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~v---------P~~~~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--I-------HSWTV---------PSLGVKVDAVPGRLNQIGFTITR-PGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--c-------ccccc---------cccCcceecCCCceEEEEEEeCC-CEEEEEEChhhc
Confidence 45788999999999988553 2 33443 32222345558888888888875 699999998754
Q ss_pred c
Q 039250 297 S 297 (571)
Q Consensus 297 ~ 297 (571)
.
T Consensus 201 G 201 (228)
T MTH00008 201 G 201 (228)
T ss_pred C
Confidence 3
No 114
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=28.59 E-value=2e+02 Score=24.74 Aligned_cols=17 Identities=35% Similarity=0.995 Sum_probs=15.3
Q ss_pred ccCcCCCCCeEEEEEEe
Q 039250 108 TQCPIQSGQTFTYEFTM 124 (571)
Q Consensus 108 ~q~~i~PG~~~~y~~~~ 124 (571)
..|||.+|+.++|.+.+
T Consensus 75 ~~CPl~~G~~~~y~~~~ 91 (123)
T cd00916 75 TSCPLSAGEDVTYTLSL 91 (123)
T ss_pred CCCCCcCCcEEEEEEee
Confidence 46999999999999977
No 115
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=28.57 E-value=1.6e+02 Score=22.09 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=26.9
Q ss_pred EEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEE
Q 039250 219 IEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVN 276 (571)
Q Consensus 219 l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~d 276 (571)
+++.+|+..+||...... +.+.+-.++|.. +|. .+-+.|.+||++.
T Consensus 2 ~~L~~g~~~~lr~~~~~~-----l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~ 47 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQR-----LRVESGRVWLTR-EGD------PDDYWLQAGDSLR 47 (63)
T ss_pred EEeCCCceEEeEcCCCcE-----EEEccccEEEEC-CCC------CCCEEECCCCEEE
Confidence 567788888888654432 666666777743 442 3334445555443
No 116
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=28.16 E-value=1.1e+02 Score=26.51 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=13.6
Q ss_pred CCCCccccCcCCCCCeEEEEE
Q 039250 102 DGPAYITQCPIQSGQTFTYEF 122 (571)
Q Consensus 102 DG~~~~~q~~i~PG~~~~y~~ 122 (571)
+||-| .|-.|.||++|.|.=
T Consensus 67 ~GVVG-~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 67 EGVVG-EQPVLAPGESFEYTS 86 (127)
T ss_pred Cceec-CCceECCCCCeEEeC
Confidence 55554 245689999888854
No 117
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.26 E-value=1.9e+02 Score=28.04 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEee
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMG 293 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~ 293 (571)
.+.+..|+++|+++..+... |.|.+ |...-.+..-||.+-.+.+.++++ |.|...|.
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi---------Hsf~i---------p~~~~k~da~PG~~~~~~~~~~~~-G~~~g~C~ 197 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDVL---------HSWAV---------PALGVKMDAVPGRLNQTAFIASRP-GVFYGQCS 197 (230)
T ss_pred eEEEecCcEEEEEEEeCccc---------cceec---------cccCCccccCCCceEEEEEEeCCc-eEEEEECh
No 118
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=26.12 E-value=2e+02 Score=27.78 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=42.4
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
-.+.+..|+.+|+++..+... |.|.| |...-.+..-||..-.+-+.+++ +|.|...|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi---------Hsf~i---------p~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDVL---------HSWAV---------PSLGLKTDAIPGRLNQTTLMSTR-PGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECccc---------ccccc---------cccccceecCCCceEEEEEecCC-cEEEEEECcccc
Confidence 357889999998888766532 33333 32223344558888888888875 699999998754
Q ss_pred c
Q 039250 297 S 297 (571)
Q Consensus 297 ~ 297 (571)
.
T Consensus 201 G 201 (227)
T MTH00098 201 G 201 (227)
T ss_pred C
Confidence 3
No 119
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=26.10 E-value=61 Score=25.75 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=24.9
Q ss_pred ceeeEEEECCcCCCceEEEecCCEEEEE
Q 039250 50 NAKDIVTVNNMFPGPVVYAQEDDRIIVK 77 (571)
Q Consensus 50 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 77 (571)
.+...+.+||+.-++.-+++.||+|.|.
T Consensus 47 tEV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 47 TEVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HHeEEEEECCEECCCcccCCCCCEEEEE
Confidence 3678899999999999999999998874
No 120
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.06 E-value=2.8e+02 Score=26.74 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=52.9
Q ss_pred eEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecCc
Q 039250 449 RTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADNP 528 (571)
Q Consensus 449 ~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adnp 528 (571)
+.+.++.|+.+++.+.... ..|. |+|=+-| ...| .-||....+.+.++.|
T Consensus 140 n~lvlP~~~~v~~~~tS~D----ViHs-------f~ip~lg----------------~k~d---aiPG~~~~~~~~~~~~ 189 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSED----VLHS-------WAVPSLG----------------LKTD---AIPGRLNQTTLMSTRP 189 (227)
T ss_pred ceEEecCCCEEEEEEEECc----cccc-------ccccccc----------------ccee---cCCCceEEEEEecCCc
Confidence 5678899999999998753 4444 5443322 1223 3378888899999999
Q ss_pred eeeEEeeechhhh-hcccEEEEEEeCC
Q 039250 529 GVWFMHCHFDIHQ-SWGLGTVLIVKNG 554 (571)
Q Consensus 529 G~w~~HCHil~H~-d~GM~~~~~V~~~ 554 (571)
|.+..-|.-+-.. +.-|-..++|.+.
T Consensus 190 G~~~g~Cse~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 190 GLYYGQCSEICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEEEEECccccCcCcCCceEEEEEeCH
Confidence 9999999887655 4556666666543
No 121
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.72 E-value=2.9e+02 Score=26.67 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=53.1
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
.+.+.++.|+.+++.+.... ..|.|.+-.-.. ..|. -||-...+.+.++.
T Consensus 139 dn~lvlP~~~~v~~~~tS~D----ViHsf~iP~lg~-----------------------k~da---iPG~~~~~~~~~~~ 188 (229)
T MTH00038 139 DNRLVLPYQTPIRVLVSSAD----VLHSWAVPSLGV-----------------------KMDA---VPGRLNQTTFFISR 188 (229)
T ss_pred CceEEEecCeEEEEEEEECC----ccccccccccCc-----------------------eeec---CCCceEEEEEEcCC
Confidence 35678999999999998643 567665543321 2333 36888889999999
Q ss_pred ceeeEEeeechhhhhcc-cEEEEEEeC
Q 039250 528 PGVWFMHCHFDIHQSWG-LGTVLIVKN 553 (571)
Q Consensus 528 pG~w~~HCHil~H~d~G-M~~~~~V~~ 553 (571)
||.+.--|--+--.... |-..++|.+
T Consensus 189 ~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 189 TGLFYGQCSEICGANHSFMPIVIESVP 215 (229)
T ss_pred CEEEEEEcccccCcCcCCCeEEEEEeC
Confidence 99999999877765444 555555543
No 122
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=24.49 E-value=2.4e+02 Score=24.19 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=33.0
Q ss_pred ceEEEecCCEEEEEEEeC---CCCCeeEEecc----cccC-CCCCCCCCCccccCcCCCCCeEEEEEEe
Q 039250 64 PVVYAQEDDRIIVKVTNQ---SPYNATIHWHG----VRQR-LSCWFDGPAYITQCPIQSGQTFTYEFTM 124 (571)
Q Consensus 64 P~i~v~~Gd~v~v~v~N~---l~~~~~iH~HG----~~~~-~~~~~DG~~~~~q~~i~PG~~~~y~~~~ 124 (571)
..=.+++|..+.+.+.=. .........|| +..+ +....||=-+ ..|||.+|+.++|.+.+
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~-l~CPl~~G~~~~y~~~~ 87 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKY-VKCPIKKGQHYDIKYTW 87 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCccc-EeCCCcCCcEEEEEEee
Confidence 344567777766655422 22333344444 3322 1111244211 36999999999999987
No 123
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=23.19 E-value=3.4e+02 Score=26.24 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=52.4
Q ss_pred ceEEEeeCCCEEEEEEeeCCCCCCCCCCeeecCceEEEEEeccCCCCCCCCCCCCCCCCcceeEEeCCCcEEEEEEEecC
Q 039250 448 TRTKVLEFGTRVQIILQDTATVTTENHPIHLHGYNFYVVGYGTGNYDPQTANFNLIDPPYMNTIGVPVGGWAAIRFTADN 527 (571)
Q Consensus 448 ~~~~~~~~g~~v~~~l~N~~~~~~~~HP~HlHG~~F~Vl~~~~g~~~~~~~~~~~~~p~~rDTv~vpp~g~~~irf~adn 527 (571)
.+.+.++.|+.+++.+.... ..|. |+|-+-| ...| .-||....+.+.++.
T Consensus 139 ~n~lvlP~~~~v~~~~tS~D----ViHs-------f~iP~lg----------------~k~d---aiPG~~~~~~~~~~~ 188 (230)
T MTH00185 139 DHRMVVPMESPIRVLITAED----VLHS-------WTVPALG----------------VKMD---AVPGRLNQATFIISR 188 (230)
T ss_pred CCeEEEecCCEEEEEEEcCc----cccc-------ccccccC----------------ceeE---ecCCceEEEEEEeCC
Confidence 35678899999999998643 4544 4443332 1223 336788888999999
Q ss_pred ceeeEEeeechhhh-hcccEEEEEEeC
Q 039250 528 PGVWFMHCHFDIHQ-SWGLGTVLIVKN 553 (571)
Q Consensus 528 pG~w~~HCHil~H~-d~GM~~~~~V~~ 553 (571)
||.+.--|.-+-.. +.-|-..++|.+
T Consensus 189 ~G~~~g~Cse~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 189 PGLYYGQCSEICGANHSFMPIVVEAVP 215 (230)
T ss_pred cEEEEEEchhhcCcCcCCCeEEEEEEC
Confidence 99999999887655 345666666554
No 124
>PRK13203 ureB urease subunit beta; Reviewed
Probab=22.96 E-value=2.6e+02 Score=23.18 Aligned_cols=59 Identities=19% Similarity=0.175 Sum_probs=38.3
Q ss_pred eEEEecC-CEEEEEEEeCCCCCee--EEecccccCCCCCCCC---------CCccccCcCCCCCeEEEEEE
Q 039250 65 VVYAQED-DRIIVKVTNQSPYNAT--IHWHGVRQRLSCWFDG---------PAYITQCPIQSGQTFTYEFT 123 (571)
Q Consensus 65 ~i~v~~G-d~v~v~v~N~l~~~~~--iH~HG~~~~~~~~~DG---------~~~~~q~~i~PG~~~~y~~~ 123 (571)
.|++++| +++.|+|+|..+++.- -|+|=......--.|= .|.-|..-..||++.+-+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV 82 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 7899999999887755 5777666544332232 33334455677777766553
No 125
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.74 E-value=4e+02 Score=25.80 Aligned_cols=74 Identities=16% Similarity=0.175 Sum_probs=0.0
Q ss_pred EEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeecccc
Q 039250 218 KIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYMS 297 (571)
Q Consensus 218 ~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~~ 297 (571)
.+.+..|+.+|+++.++... |.|.| |...-.+..-||..-.+.+.++.+ |.|...|..+-.
T Consensus 145 ~lvlP~~~~v~~~itS~DVi---------Hsf~v---------p~lg~k~daiPG~~~~~~~~~~~~-G~y~g~Cse~CG 205 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADVL---------HSFAV---------PSLSVKIDAVPGRLNQTSFFIKRP-GVFYGQCSEICG 205 (234)
T ss_pred EEEEecCcEEEEEEEeCchh---------ccccc---------cccCceeEccCCceEeEEEEeCCC-EEEEEEChhhcC
Q ss_pred cCCCccCCcceEEE
Q 039250 298 AQGVSFQNISAIAY 311 (571)
Q Consensus 298 ~~~~~~~~~~~~ai 311 (571)
... .+-.....++
T Consensus 206 ~~H-s~M~i~v~vv 218 (234)
T MTH00051 206 ANH-SFMPIVIEGV 218 (234)
T ss_pred ccc-ccCeeEEEEE
No 126
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=22.44 E-value=2.7e+02 Score=23.04 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred eEEEecC-CEEEEEEEeCCCCCee--EEecccccCCCCCCCC---------CCccccCcCCCCCeEEEEEE
Q 039250 65 VVYAQED-DRIIVKVTNQSPYNAT--IHWHGVRQRLSCWFDG---------PAYITQCPIQSGQTFTYEFT 123 (571)
Q Consensus 65 ~i~v~~G-d~v~v~v~N~l~~~~~--iH~HG~~~~~~~~~DG---------~~~~~q~~i~PG~~~~y~~~ 123 (571)
.|++++| ++++|.|+|..++|.- -|+|=......-..|= .|.-|..-..||++.+-+..
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV 82 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV 82 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE
Confidence 4788888 7899999999887755 5777666544332332 33334455677777776553
No 127
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.44 E-value=3e+02 Score=26.62 Aligned_cols=63 Identities=14% Similarity=0.113 Sum_probs=43.1
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
..+.+..|+.+|+++..+... |.|.+ |...-.+..-||..-.+.+.+++ +|.|..+|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DVi---------Hsf~i---------P~lg~k~daiPG~~~~~~~~~~~-~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAEDVL---------HSWTV---------PALGVKMDAVPGRLNQATFIISR-PGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCccc---------ccccc---------cccCceeEecCCceEEEEEEeCC-cEEEEEEchhhc
Confidence 467899999998888765532 33333 33333445558888888888875 699999998754
Q ss_pred cc
Q 039250 297 SA 298 (571)
Q Consensus 297 ~~ 298 (571)
..
T Consensus 201 G~ 202 (230)
T MTH00185 201 GA 202 (230)
T ss_pred Cc
Confidence 43
No 128
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.34 E-value=96 Score=27.61 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=21.7
Q ss_pred EeCCCcEEEEEEE-ecCc---eeeEEeeechh
Q 039250 512 GVPVGGWAAIRFT-ADNP---GVWFMHCHFDI 539 (571)
Q Consensus 512 ~vpp~g~~~irf~-adnp---G~w~~HCHil~ 539 (571)
.|+||..++|.++ ..|| |.|.|+|-...
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 4689999999995 3466 89999996543
No 129
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=22.34 E-value=2e+02 Score=29.36 Aligned_cols=64 Identities=13% Similarity=0.212 Sum_probs=48.6
Q ss_pred eEEEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeCCCCceeEEEeeccc
Q 039250 217 YKIEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTADQPIGKYSMAMGPYM 296 (571)
Q Consensus 217 p~l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~~~~g~~~i~~~~~~ 296 (571)
..+.+..|+.+||+|-..... |.|.| |...-.+..-||..-.+-+.+++ +|.|...|..+.
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~~-~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIANE-PGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcCC-CEEEEEEChhhc
Confidence 457899999999999877743 34444 55566677778999899998885 699999998775
Q ss_pred ccC
Q 039250 297 SAQ 299 (571)
Q Consensus 297 ~~~ 299 (571)
...
T Consensus 212 G~g 214 (315)
T PRK10525 212 GPG 214 (315)
T ss_pred Ccc
Confidence 543
No 130
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.17 E-value=1.2e+02 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=23.4
Q ss_pred cCcCCCCCeEEEEEEe---CCCCcceeEeeccc
Q 039250 109 QCPIQSGQTFTYEFTM---FQQKGTFFWHAHVS 138 (571)
Q Consensus 109 q~~i~PG~~~~y~~~~---~~~~Gt~wYH~H~~ 138 (571)
..||+||++++-.+.. |...|+|.|++-+-
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 3689999999999943 35579999987653
No 131
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=21.15 E-value=4.4e+02 Score=21.19 Aligned_cols=59 Identities=29% Similarity=0.500 Sum_probs=36.6
Q ss_pred EEeCCCEEE--EEEeecCccceEEEEEc--C---ceeEEEEeCCCCCCeeEeceEEeCCCceEEEEEEeC-C-CCceeEE
Q 039250 220 EVVPGKTYL--LRLINAGLNMENFFAIA--N---HKLTIVEADAEYTKPFSTDRVMLGPGQTVNVLVTAD-Q-PIGKYSM 290 (571)
Q Consensus 220 ~v~~G~~~r--lRliNa~~~~~~~~~i~--g---h~~~via~DG~~~~P~~~d~l~l~pgeR~dv~v~~~-~-~~g~~~i 290 (571)
.+..|++|. +.|.|.|... ..|++. . ..|.+ .| ..-.|.||+..++-|.+. . +.|.|.-
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p-~~f~v~~~~~~~~~~~v--------~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~ 82 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIP-ARFRVRQPESLSSFFSV--------EP---PSGFLAPGESVELEVTFSPTKPLGDYEG 82 (102)
T ss_pred EEccCCEEEEEEEEEECCCCC-EEEEEEeCCcCCCCEEE--------EC---CCCEECCCCEEEEEEEEEeCCCCceEEE
Confidence 566677774 8999999554 334442 2 12222 12 234699999999999887 3 3466643
No 132
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.43 E-value=63 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.021 Sum_probs=18.7
Q ss_pred EEEECCcCC-CceEEEecCCEEEE
Q 039250 54 IVTVNNMFP-GPVVYAQEDDRIIV 76 (571)
Q Consensus 54 ~~~~Ng~~p-gP~i~v~~Gd~v~v 76 (571)
.+.+||+.- -|..+++.||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 346799864 68999999999876
No 133
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=20.39 E-value=1.1e+02 Score=31.59 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=17.7
Q ss_pred CCCCccccCcCCCCCeEEEEEEeC-CCCcceeEeeccc
Q 039250 102 DGPAYITQCPIQSGQTFTYEFTMF-QQKGTFFWHAHVS 138 (571)
Q Consensus 102 DG~~~~~q~~i~PG~~~~y~~~~~-~~~Gt~wYH~H~~ 138 (571)
-|.|-.....+..|+.|.|...+. ..+|+| |-|..
T Consensus 73 ng~~~p~S~~le~G~~y~fki~lkar~pG~~--hvh~~ 108 (381)
T PF04744_consen 73 NGQPVPRSVSLELGGTYEFKIVLKARRPGTW--HVHPM 108 (381)
T ss_dssp TTEE-SS-B---TT-EEEEEEEEEE-S-EEE--EEEEE
T ss_pred cCccccceEEeecCCeeeEEEEEecccCccc--cceee
Confidence 444433346789999988888774 679985 44443
No 134
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=20.17 E-value=2.8e+02 Score=23.62 Aligned_cols=73 Identities=19% Similarity=0.148 Sum_probs=40.6
Q ss_pred EEEeCCCEEEEEEeecCccceEEEEEcCceeEEEEeCCCCCCee----EeceEEeCCCceEEEEEEeCC--CCceeEEEe
Q 039250 219 IEVVPGKTYLLRLINAGLNMENFFAIANHKLTIVEADAEYTKPF----STDRVMLGPGQTVNVLVTADQ--PIGKYSMAM 292 (571)
Q Consensus 219 l~v~~G~~~rlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~----~~d~l~l~pgeR~dv~v~~~~--~~g~~~i~~ 292 (571)
-.+..|+.+++|+-=......-.+. -.+.+...+|..+--. ....+....++++.+.++++. .+|.|.+.+
T Consensus 29 ~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v 105 (142)
T PF14524_consen 29 SSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISV 105 (142)
T ss_dssp SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEE
T ss_pred eEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEE
Confidence 3577888888887544433322222 3456666777544111 123455555889999888876 479999988
Q ss_pred ec
Q 039250 293 GP 294 (571)
Q Consensus 293 ~~ 294 (571)
..
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 76
Done!