Query 039251
Match_columns 89
No_of_seqs 60 out of 62
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039251.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039251hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vf1_A 11R-lipoxygenase; LOX, 98.5 1.5E-07 5E-12 79.8 6.4 67 5-71 56-130 (698)
2 3dy5_A Allene oxide synthase-l 97.7 3.5E-05 1.2E-09 67.9 5.8 67 5-71 409-482 (1066)
3 3fg1_A Allene oxide synthase-l 97.7 6.1E-05 2.1E-09 63.9 6.0 63 6-71 43-112 (696)
4 3v98_A Arachidonate 5-lipoxyge 97.7 0.0001 3.5E-09 62.5 7.2 63 6-71 58-124 (691)
5 1lox_A 15-lipoxygenase, 15LOX; 97.5 0.0002 6.8E-09 60.3 6.9 58 13-70 39-102 (662)
6 3cwz_B RAB6IP1, RAB6-interacti 96.3 0.0086 2.9E-07 47.7 6.7 55 18-72 288-346 (384)
7 2wxu_A Phospholipase C; cytoly 95.6 0.045 1.5E-06 43.8 7.7 65 5-70 291-363 (370)
8 1olp_A Alpha-toxin; zinc phosp 95.0 0.043 1.5E-06 43.8 5.9 64 5-69 291-362 (370)
9 2pa7_A DTDP-6-deoxy-3,4-keto-h 43.9 22 0.00075 24.2 3.3 40 28-78 62-101 (141)
10 1pm4_A YPM; jelly roll fold, t 26.5 25 0.00085 23.8 1.3 13 34-46 48-61 (119)
11 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 23.4 23 0.00079 25.5 0.7 13 65-77 118-130 (197)
12 3ejk_A DTDP sugar isomerase; Y 20.9 30 0.001 24.3 0.9 13 66-78 116-128 (174)
13 1dzr_A DTDP-4-dehydrorhamnose 20.7 28 0.00097 24.5 0.7 12 66-77 112-123 (183)
No 1
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa}
Probab=98.50 E-value=1.5e-07 Score=79.79 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=60.2
Q ss_pred CCCCCCCCCcccccccceeeecccccCceEEEEEEeCC---CCCeecEEEEeccC-----CCceeEEeccccCCC
Q 039251 5 RLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGY---DGWKPESVTVYGYY-----TRSISFYYNTWIPDD 71 (89)
Q Consensus 5 rLDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G~---dgW~Pe~V~Iy~~~-----~~~vtF~f~~~iP~~ 71 (89)
.||+|....|||.++|+|.|++.|++.||.|-|.++++ ++|..++|+|.... .....|-.+.||-.+
T Consensus 56 ~L~~~~~~~FeRGs~D~F~v~~~~LG~L~~IrI~hDnsG~~~~Wfl~~V~V~~~~t~~~~g~~~~Fpc~rWL~~d 130 (698)
T 3vf1_A 56 SLDKYFHNDFESGGTDTYDQSGVDVGEIAMITLKENGFGLKSDWYIAKVIIEKIDEATGFSNKYIFPCYRWVIKQ 130 (698)
T ss_dssp EECCBCSSSSCCCCEEEEEEEECCCSSEEEEEEEECCCSSBCCCEEEEEEEEEECTTTCCEEEEEEEEEEECSSE
T ss_pred EeCCCCCCccccCCeeEEEEEecccCCceEEEEEECCCCCCCCeEEeEEEEEcCCCCCCCCcEEEEEhhhcccCC
Confidence 58888888999999999999999999999999999953 89999999999875 467889999999865
No 2
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla}
Probab=97.73 E-value=3.5e-05 Score=67.93 Aligned_cols=67 Identities=27% Similarity=0.387 Sum_probs=53.9
Q ss_pred CCCCCCCCCcccccccceeeecccccCceEEEEEEeC------CCCCeecEEEEeccC-CCceeEEeccccCCC
Q 039251 5 RLDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSG------YDGWKPESVTVYGYY-TRSISFYYNTWIPDD 71 (89)
Q Consensus 5 rLDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G------~dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~ 71 (89)
.||+|....|||-++|+|.|+...++.||.|-|.+++ .++|..++|+|.... .....|-.+.||-.+
T Consensus 409 ~L~~~~~~~FeRGs~d~F~v~~~~LG~L~~IrI~hDnsG~~~~~~~Wfl~~V~V~~~~tg~~~~Fpc~rWL~~d 482 (1066)
T 3dy5_A 409 KLDKWFHNDFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCFRWVIKD 482 (1066)
T ss_dssp EC-------CCTTCEEEEEEECSCCSSEEEEEEECCCCC--CCCCCEEEEEEEEEESSSSSCEEEEEEEEESSE
T ss_pred EeCCCCcCccccCCcceEEEEEecCCCceEEEEEECCCCCCCCCCCeEEeEEEEEeCCCCCEEEEehhhhccCC
Confidence 4788877899999999999999888999999999994 479999999999875 677899999999865
No 3
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A
Probab=97.66 E-value=6.1e-05 Score=63.87 Aligned_cols=63 Identities=29% Similarity=0.392 Sum_probs=55.7
Q ss_pred CCCCCCCCcccccccceeeecccccCceEEEEEEeCC------CCCeecEEEEeccC-CCceeEEeccccCCC
Q 039251 6 LDDPYSRTFESCSTDTYTLYGPCTYQICYLYLYRSGY------DGWKPESVTVYGYY-TRSISFYYNTWIPDD 71 (89)
Q Consensus 6 LDdp~~~~FerCstDtF~V~G~C~~~ICylyL~r~G~------dgW~Pe~V~Iy~~~-~~~vtF~f~~~iP~~ 71 (89)
||+ ..|||-++|+|.|+...++.||.|-|.++++ ++|..++|+|-... .....|..+.||-.+
T Consensus 43 L~~---~~FeRGs~d~F~v~~~dLG~L~~IrI~hDnsg~G~~~~~Wf~~~V~V~~~~tg~~~~Fpc~rWL~~d 112 (696)
T 3fg1_A 43 LDK---GSFEAGSKEQYTVQGFDVGDIQLIELHSDGGGYWSGDPDWFVNRVIIISSTQDRVYSFPCFRWVIKD 112 (696)
T ss_dssp ECS---SCBCTTCEEEEEEEEECCSSEEEEEEEECCCCTTCSCCCEEEEEEEEEETTCSSCEEEEEEEEESSE
T ss_pred eCC---CCcCCCCccEEEEEEccCCCceEEEEEECCcCCCCCCCCeEeeEEEEEeCCCCcEEEeEhhhhccCC
Confidence 555 6899999999999998889999999999854 79999999999875 677899999999865
No 4
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B
Probab=97.65 E-value=0.0001 Score=62.51 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=55.1
Q ss_pred CCCCCCCCcccccccceeeec-ccccCceEEEEEEeC--C-CCCeecEEEEeccCCCceeEEeccccCCC
Q 039251 6 LDDPYSRTFESCSTDTYTLYG-PCTYQICYLYLYRSG--Y-DGWKPESVTVYGYYTRSISFYYNTWIPDD 71 (89)
Q Consensus 6 LDdp~~~~FerCstDtF~V~G-~C~~~ICylyL~r~G--~-dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~ 71 (89)
||+ ..|||-++|+|.|+. ..++.||.|-|.+++ . ++|..++|+|.........|..+.||-.+
T Consensus 58 L~~---~~FeRG~~D~F~v~~~~~LG~L~~IrI~hDnsG~~~~Wfl~~V~V~~~~g~~~~Fpc~rWL~~d 124 (691)
T 3v98_A 58 LDK---GSFERGAVDSYDVTVDEELGEIQLVRIEKRKYGSNDDWYLKYITLKTPHGDYIEFPCYRWITGD 124 (691)
T ss_dssp CCS---SCBCTTCEEEEEECCSSCCCSEEEEEEEEECSSSCCCEEEEEEEEECTTSCEEEEEEEEEECSS
T ss_pred ecC---CcccCCCeeEEEEEeccCCCCceEEEEEECCCCCCCCeEEeEEEEECCCCcEEEEehHHhcCCC
Confidence 554 689999999999999 556899999999994 3 89999999999877777899999999865
No 5
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A*
Probab=97.50 E-value=0.0002 Score=60.34 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=51.4
Q ss_pred Ccccccccceeeecccc-cCceEEEEEEeCC---CCCeecEEEEeccC--CCceeEEeccccCC
Q 039251 13 TFESCSTDTYTLYGPCT-YQICYLYLYRSGY---DGWKPESVTVYGYY--TRSISFYYNTWIPD 70 (89)
Q Consensus 13 ~FerCstDtF~V~G~C~-~~ICylyL~r~G~---dgW~Pe~V~Iy~~~--~~~vtF~f~~~iP~ 70 (89)
.|||.++|+|.|..++. +.||.|.|.+.+. ++|.-++|+|-+.+ ...+.|.-|+||-.
T Consensus 39 ~FerG~~d~F~v~~~~dlG~l~~I~I~~d~~g~~~~Wfl~~V~V~~p~~~g~~~~F~Cn~WL~~ 102 (662)
T 1lox_A 39 RPTRNKEEEFKVNVSKYLGSLLFVRLRKKHFLKEDAWFCNWISVQALGAAEDKYWFPCYRWVVG 102 (662)
T ss_dssp CCCTTCEEEEEEECSSCCCSEEEEEEEEECSSSCCCEEEEEEEEEESSSCCCCEEEEEEEEECS
T ss_pred CcCCCCccEEEEEecCCCCcceEEEEEeCCCCCCCCcEEeEEEEecCCCCCcEEEEEeceEecC
Confidence 79999999999999665 7899999999976 99999999998876 45589999999874
No 6
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus}
Probab=96.35 E-value=0.0086 Score=47.68 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=47.1
Q ss_pred cccceeeecccccCceEEEEEEe--CC-CCCeecEEEEecc-CCCceeEEeccccCCCc
Q 039251 18 STDTYTLYGPCTYQICYLYLYRS--GY-DGWKPESVTVYGY-YTRSISFYYNTWIPDDI 72 (89)
Q Consensus 18 stDtF~V~G~C~~~ICylyL~r~--G~-dgW~Pe~V~Iy~~-~~~~vtF~f~~~iP~~v 72 (89)
++|+|.|+..|++.|++|-|.++ |. ++|.-++|.|-.. ......|..+.||-.+.
T Consensus 288 ~~d~F~v~~~~LG~L~~I~I~HDnsG~~p~Wfl~~V~V~d~~tg~~~~Fpc~rWL~~d~ 346 (384)
T 3cwz_B 288 NVLEMTFECQNLGKLTTVQIGHDNSGLYAKWLVECVMVRNEVTGHTYKFPCGRWLGKGM 346 (384)
T ss_dssp TCCEEEEEEECCCSEEEEEEEECCCSSCCCEEEEEEEEEETTTCCEEEEEEEEEESTTS
T ss_pred cCceEEEecccCCCceEEEEEECCCCCCCceeEeEEEEEeCCCCcEEEEECceeCCCCC
Confidence 37899999999999999999998 44 8999999999987 45678899999987443
No 7
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=95.59 E-value=0.045 Score=43.75 Aligned_cols=65 Identities=26% Similarity=0.477 Sum_probs=52.2
Q ss_pred CCCCCCCCCcccccccceeeec---ccc-cCceEEEEEEeCC----CCCeecEEEEeccCCCceeEEeccccCC
Q 039251 5 RLDDPYSRTFESCSTDTYTLYG---PCT-YQICYLYLYRSGY----DGWKPESVTVYGYYTRSISFYYNTWIPD 70 (89)
Q Consensus 5 rLDdp~~~~FerCstDtF~V~G---~C~-~~ICylyL~r~G~----dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~ 70 (89)
.||++ .+.|||=+.|+|+|.= +-. +.|=.|-|++... |+|.|+||+|-.++.....|..+.||-.
T Consensus 291 ~LD~~-gndFe~G~~d~y~v~~~~~~~~lg~l~~v~l~K~~~~~~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~g 363 (370)
T 2wxu_A 291 EMDNP-GNDFMTGSKDTYTFKLKDENLKIDDIQNMWIRKRKYTAFPDAYKPENIKIIANGKVVVDKDINEWISG 363 (370)
T ss_dssp ECCCS-SCTTCTTCEEEEEEECSCTTCCGGGEEEEEEEEECSSSSCCCBCEEEEEEEETTEEEEEEECCSCBCT
T ss_pred hhhCc-CCCcCCCCeeeEEEecCCCccCcCceEEEEEEccCCCCCCccceeeeEEEEcCCCcEEEeccceeeeC
Confidence 37886 4799999999999943 223 5788888877755 9999999999998766688989999873
No 8
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=95.02 E-value=0.043 Score=43.85 Aligned_cols=64 Identities=30% Similarity=0.439 Sum_probs=51.3
Q ss_pred CCCCCCCCCcccccccceeeec---cc-ccCceEEEEEEeCC----CCCeecEEEEeccCCCceeEEeccccC
Q 039251 5 RLDDPYSRTFESCSTDTYTLYG---PC-TYQICYLYLYRSGY----DGWKPESVTVYGYYTRSISFYYNTWIP 69 (89)
Q Consensus 5 rLDdp~~~~FerCstDtF~V~G---~C-~~~ICylyL~r~G~----dgW~Pe~V~Iy~~~~~~vtF~f~~~iP 69 (89)
.||++. +.|||=+.|+|+|.= +- ++.|=.|-|++... |+|.|+||+|-.++.....|..+.||-
T Consensus 291 ~LD~~g-ndFe~G~~d~y~v~~~~~~~dlg~l~~v~l~K~~~~~~~D~Wfc~~i~V~~p~~~~~~FP~y~Wi~ 362 (370)
T 1olp_A 291 ALDNPG-NDFTRNQEGTYTLKLKNKNTKYSDIKNMWIRDEKLTVATDGWKPSYVKVIAGDKVRLEKNINEWIS 362 (370)
T ss_dssp ECCCSS-CCSCTTCEEEEEEECSCSSCCGGGEEEEEEEEECSSSSCCEECEEEEEEEETTEEEEEEECCSCEE
T ss_pred hhhCcC-CccCCCCeeEEEEeccCCcCCcCceEEEEEEcCCCCCCCccceeeeEEEEcCCCcEEEeccceeee
Confidence 478864 799999999999944 22 35687888877665 999999999999876667888888886
No 9
>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*
Probab=43.90 E-value=22 Score=24.16 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=26.1
Q ss_pred cccCceEEEEEEeCCCCCeecEEEEeccCCCceeEEeccccCCCcceeecc
Q 039251 28 CTYQICYLYLYRSGYDGWKPESVTVYGYYTRSISFYYNTWIPDDIWYGFNY 78 (89)
Q Consensus 28 C~~~ICylyL~r~G~dgW~Pe~V~Iy~~~~~~vtF~f~~~iP~~vwyG~n~ 78 (89)
|+++-|.+.| |+++.+...+.+... +.-.||.++|.++..
T Consensus 62 ~l~Gs~~v~l-----dDg~~~~~~~L~~~~------~gL~IppgvWh~~~~ 101 (141)
T 2pa7_A 62 CLNGSCRVIL-----DDGNIIQEITLDSPA------VGLYVGPAVWHEMHD 101 (141)
T ss_dssp EEESCEEEEE-----ECSSCEEEEEECCTT------EEEEECTTCEEEEEC
T ss_pred EEccEEEEEE-----ECCcEEEEEEECCCC------cEEEeCCCEEEEEEE
Confidence 5556677777 445555544555422 377899999999854
No 10
>1pm4_A YPM; jelly roll fold, toxin; 1.75A {Yersinia pseudotuberculosis} SCOP: b.135.1.1 PDB: 1poq_A
Probab=26.52 E-value=25 Score=23.84 Aligned_cols=13 Identities=46% Similarity=0.910 Sum_probs=10.1
Q ss_pred EEEEEEe-CCCCCe
Q 039251 34 YLYLYRS-GYDGWK 46 (89)
Q Consensus 34 ylyL~r~-G~dgW~ 46 (89)
-|.|.|+ |+|||+
T Consensus 48 tlill~~ig~~gw~ 61 (119)
T 1pm4_A 48 TLILLRNVGGNGWG 61 (119)
T ss_dssp EEEEEEECSSSEEE
T ss_pred EEEEEEecCCCchh
Confidence 4667776 999997
No 11
>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*
Probab=23.37 E-value=23 Score=25.47 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=11.0
Q ss_pred ccccCCCcceeec
Q 039251 65 NTWIPDDIWYGFN 77 (89)
Q Consensus 65 ~~~iP~~vwyG~n 77 (89)
.-+||.|+|+||-
T Consensus 118 ~L~IP~G~aHgf~ 130 (197)
T 1nxm_A 118 SIFVPRGVANGFQ 130 (197)
T ss_dssp EEEECTTEEEEEE
T ss_pred EEEeCCCeEEEEE
Confidence 3589999999984
No 12
>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}
Probab=20.85 E-value=30 Score=24.28 Aligned_cols=13 Identities=46% Similarity=1.155 Sum_probs=11.0
Q ss_pred cccCCCcceeecc
Q 039251 66 TWIPDDIWYGFNY 78 (89)
Q Consensus 66 ~~iP~~vwyG~n~ 78 (89)
-+||.|+|+||-.
T Consensus 116 L~IP~G~aHgf~~ 128 (174)
T 3ejk_A 116 LRIPPQVWYGFAA 128 (174)
T ss_dssp EEECTTCEEEEEE
T ss_pred EEeCCCcEEEEEE
Confidence 3899999999953
No 13
>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*
Probab=20.68 E-value=28 Score=24.53 Aligned_cols=12 Identities=42% Similarity=0.941 Sum_probs=10.4
Q ss_pred cccCCCcceeec
Q 039251 66 TWIPDDIWYGFN 77 (89)
Q Consensus 66 ~~iP~~vwyG~n 77 (89)
-+||.|+|+||-
T Consensus 112 L~IP~G~aHgf~ 123 (183)
T 1dzr_A 112 LWIPEGFAHGFV 123 (183)
T ss_dssp EEECTTEEEEEE
T ss_pred EEeCCCeEEEEE
Confidence 379999999984
Done!