Query 039252
Match_columns 139
No_of_seqs 131 out of 1049
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.2E-43 3.9E-48 264.9 6.2 134 4-137 24-159 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.3E-42 4.5E-47 254.7 6.9 122 13-134 6-128 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.8E-36 6E-41 217.6 1.4 121 10-131 15-136 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 3.4E-30 1.2E-34 183.8 4.6 108 4-117 3-113 (146)
5 2js7_A Myeloid differentiation 99.9 2.6E-27 8.8E-32 171.2 5.1 100 12-113 13-117 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 1.1E-27 3.6E-32 171.2 0.2 103 12-116 2-110 (149)
7 1t3g_A X-linked interleukin-1 99.9 2.2E-26 7.6E-31 166.1 6.2 100 14-113 1-114 (159)
8 2j67_A TOLL like receptor 10; 99.9 4.3E-27 1.5E-31 172.7 2.4 99 11-111 31-134 (178)
9 3j0a_A TOLL-like receptor 5; m 99.8 2E-21 6.8E-26 168.7 5.2 100 12-113 667-774 (844)
10 1eiw_A Hypothetical protein MT 98.5 1.1E-07 3.8E-12 64.3 5.3 73 14-109 3-75 (111)
11 3hyn_A Putative signal transdu 97.4 0.00025 8.5E-09 51.7 5.7 83 23-110 27-118 (189)
12 2f62_A Nucleoside 2-deoxyribos 96.0 0.023 7.9E-07 40.3 6.9 75 30-108 27-105 (161)
13 2khz_A C-MYC-responsive protei 91.1 0.82 2.8E-05 32.0 6.9 86 14-107 10-109 (165)
14 4fyk_A Deoxyribonucleoside 5'- 90.0 1.4 4.8E-05 30.8 7.2 64 30-97 19-94 (152)
15 3ehd_A Uncharacterized conserv 89.8 1.4 4.9E-05 31.0 7.2 75 30-109 20-105 (162)
16 1s2d_A Purine trans deoxyribos 86.0 2.6 8.9E-05 29.7 6.6 85 17-107 9-115 (167)
17 2yvq_A Carbamoyl-phosphate syn 73.5 5 0.00017 27.2 4.5 62 18-81 27-107 (143)
18 1f8y_A Nucleoside 2-deoxyribos 63.7 8.9 0.0003 26.6 4.1 75 29-108 18-113 (157)
19 1sc3_B Interleukin-1 beta conv 61.8 2 6.9E-05 27.0 0.4 24 20-43 22-45 (88)
20 2jug_A TUBC protein; docking d 60.2 7.9 0.00027 23.4 3.0 38 33-70 8-49 (78)
21 1byr_A Protein (endonuclease); 59.2 18 0.0006 23.9 4.9 36 31-67 15-51 (155)
22 2ql9_B Caspase-7; cysteine pro 57.6 2.4 8.2E-05 27.0 0.2 30 14-43 9-47 (97)
23 1qtn_B Caspase-8; apoptosis, d 55.6 2.3 8E-05 27.0 -0.1 30 14-43 11-49 (95)
24 2dko_B Caspase-3; low barrier 53.7 3 0.0001 26.9 0.2 30 14-43 15-53 (103)
25 1pyo_B Caspase-2; apoptosis, c 53.4 3.1 0.00011 26.9 0.2 30 14-43 13-51 (105)
26 2xzd_B Caspase-3; hydrolase-pr 47.0 4.9 0.00017 26.7 0.4 30 14-43 14-52 (118)
27 1v95_A Nuclear receptor coacti 46.3 34 0.0012 23.0 4.6 46 29-75 21-67 (130)
28 1evl_A Threonyl-tRNA synthetas 43.2 31 0.001 27.0 4.6 57 15-75 298-355 (401)
29 1wu7_A Histidyl-tRNA synthetas 43.1 30 0.001 27.3 4.6 57 15-75 332-389 (434)
30 3rjm_B Caspase-2; caspase-2, c 41.1 6 0.00021 26.2 0.1 30 14-43 14-52 (117)
31 3net_A Histidyl-tRNA synthetas 41.0 28 0.00095 28.0 4.1 61 14-78 370-430 (465)
32 4etm_A LMPTP, low molecular we 41.0 73 0.0025 22.1 5.9 62 1-63 4-73 (173)
33 3lc0_A Histidyl-tRNA synthetas 38.1 65 0.0022 25.9 5.9 60 14-77 360-419 (456)
34 2h1v_A Ferrochelatase; rossman 37.9 64 0.0022 24.5 5.5 64 31-96 63-135 (310)
35 3hly_A Flavodoxin-like domain; 36.1 95 0.0033 20.7 7.8 50 29-82 15-64 (161)
36 3l4e_A Uncharacterized peptida 35.8 1.1E+02 0.0036 21.8 6.2 67 17-90 30-97 (206)
37 1bax_A M-PMV MA, M-PMV matrix 35.6 20 0.00068 22.9 1.9 17 30-46 10-26 (94)
38 4g84_A Histidine--tRNA ligase, 35.5 52 0.0018 26.0 4.9 59 14-75 365-424 (464)
39 4g85_A Histidine-tRNA ligase, 35.3 62 0.0021 26.2 5.4 59 14-75 418-477 (517)
40 3pid_A UDP-glucose 6-dehydroge 35.0 29 0.001 27.9 3.3 49 25-73 347-400 (432)
41 3ojo_A CAP5O; rossmann fold, c 34.6 65 0.0022 25.8 5.3 61 24-85 329-392 (431)
42 3ikl_A DNA polymerase subunit 34.1 1.4E+02 0.0046 24.3 7.1 54 26-81 361-416 (459)
43 1qe0_A Histidyl-tRNA synthetas 33.6 34 0.0011 26.8 3.4 58 14-75 328-386 (420)
44 3czq_A Putative polyphosphate 32.9 1.1E+02 0.0038 23.4 6.1 98 17-115 86-203 (304)
45 4e51_A Histidine--tRNA ligase; 32.0 43 0.0015 27.0 3.9 60 15-75 354-415 (467)
46 4a7p_A UDP-glucose dehydrogena 32.0 45 0.0016 26.8 4.0 61 25-85 337-406 (446)
47 1nj1_A PROR, proline-tRNA synt 31.3 40 0.0014 27.5 3.6 43 15-57 314-361 (501)
48 2fz5_A Flavodoxin; alpha/beta 31.3 98 0.0034 19.4 7.5 58 29-96 14-73 (137)
49 4hkj_D CPXV203 protein; viral 31.1 21 0.0007 25.8 1.6 43 40-82 49-92 (206)
50 2efe_B Small GTP-binding prote 30.5 1.1E+02 0.0038 19.7 7.4 40 53-95 68-108 (181)
51 4f21_A Carboxylesterase/phosph 30.1 85 0.0029 22.5 4.9 46 15-60 183-230 (246)
52 1z0j_A RAB-22, RAS-related pro 29.6 1.1E+02 0.0038 19.4 6.6 27 54-80 63-90 (170)
53 2i4l_A Proline-tRNA ligase; al 29.5 24 0.00083 28.3 2.0 42 15-56 365-409 (458)
54 1qf6_A THRRS, threonyl-tRNA sy 29.5 74 0.0025 26.8 5.0 61 15-79 539-599 (642)
55 3soz_A ORF 245 protein, cytopl 29.0 31 0.0011 25.6 2.4 66 9-84 16-83 (248)
56 3ftb_A Histidinol-phosphate am 28.7 1.7E+02 0.0058 21.3 6.6 59 37-97 113-173 (361)
57 1nyr_A Threonyl-tRNA synthetas 28.5 84 0.0029 26.3 5.2 57 16-75 546-603 (645)
58 2j3l_A Prolyl-tRNA synthetase; 28.2 60 0.0021 26.6 4.2 60 16-79 471-533 (572)
59 2fg5_A RAB-22B, RAS-related pr 27.8 1.4E+02 0.0046 19.8 6.8 28 54-81 80-108 (192)
60 1dlj_A UDP-glucose dehydrogena 27.5 92 0.0032 24.3 5.0 50 25-74 324-379 (402)
61 3hjn_A DTMP kinase, thymidylat 27.5 64 0.0022 22.5 3.8 31 19-49 2-34 (197)
62 1htt_A Histidyl-tRNA synthetas 27.3 39 0.0013 26.5 2.8 58 14-75 326-386 (423)
63 3c5c_A RAS-like protein 12; GD 27.0 1E+02 0.0034 20.5 4.6 27 54-80 77-103 (187)
64 3g79_A NDP-N-acetyl-D-galactos 27.0 57 0.0019 26.5 3.8 52 24-75 367-421 (478)
65 2l69_A Rossmann 2X3 fold prote 26.5 1.3E+02 0.0045 19.3 5.7 83 18-112 4-86 (134)
66 2lpy_A Matrix protein P10; GAG 26.2 33 0.0011 23.0 1.8 18 29-46 8-25 (124)
67 4dik_A Flavoprotein; TM0755, e 26.0 2.4E+02 0.0082 22.1 8.7 66 17-84 267-334 (410)
68 4a8j_B Elongator complex prote 25.9 1.3E+02 0.0044 22.8 5.2 43 69-115 100-142 (270)
69 2zt5_A Glycyl-tRNA synthetase; 25.6 89 0.003 26.7 4.9 58 15-75 559-618 (693)
70 2pw6_A Uncharacterized protein 25.3 73 0.0025 23.8 3.9 69 29-99 95-164 (271)
71 3sm9_A Mglur3, metabotropic gl 24.8 52 0.0018 26.1 3.2 53 18-70 188-243 (479)
72 3fni_A Putative diflavin flavo 24.7 1.6E+02 0.0054 19.6 7.5 51 29-83 19-70 (159)
73 3h5l_A Putative branched-chain 24.6 96 0.0033 23.5 4.6 54 17-70 166-219 (419)
74 2hfv_A Hypothetical protein RP 24.3 58 0.002 20.8 2.7 28 22-51 27-54 (97)
75 1ati_A Glycyl-tRNA synthetase; 23.5 83 0.0028 25.6 4.2 57 15-75 398-458 (505)
76 3en0_A Cyanophycinase; serine 23.1 1.3E+02 0.0044 22.8 4.9 55 18-74 60-116 (291)
77 4h0c_A Phospholipase/carboxyle 23.0 1.1E+02 0.0039 21.0 4.4 47 15-61 151-199 (210)
78 2i2x_B MTAC, methyltransferase 22.9 1E+02 0.0035 22.5 4.3 87 17-113 125-213 (258)
79 2q62_A ARSH; alpha/beta, flavo 22.9 1.9E+02 0.0066 21.0 5.8 53 30-83 52-112 (247)
80 3ks9_A Mglur1, metabotropic gl 22.1 61 0.0021 25.9 3.1 51 18-68 200-252 (496)
81 3n75_A LDC, lysine decarboxyla 21.8 1.4E+02 0.0047 25.6 5.3 68 30-112 17-84 (715)
82 3t5x_B 26S proteasome complex 21.4 55 0.0019 19.7 2.0 18 28-45 49-66 (70)
83 3n0x_A Possible substrate bind 21.3 1.4E+02 0.0047 22.2 4.8 54 17-70 143-196 (374)
84 1ydg_A Trp repressor binding p 20.6 1.3E+02 0.0044 20.6 4.3 54 29-83 21-92 (211)
85 2nn3_C Caspase-1; cysteine pro 20.5 58 0.002 25.0 2.5 30 14-43 206-244 (310)
86 3b6i_A Flavoprotein WRBA; flav 20.4 2E+02 0.0068 19.2 5.7 52 29-83 16-82 (198)
87 2hxs_A RAB-26, RAS-related pro 20.4 1.8E+02 0.0061 18.6 6.0 28 54-81 64-92 (178)
88 2a5l_A Trp repressor binding p 20.1 2E+02 0.007 19.2 5.8 54 29-83 20-85 (200)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.2e-43 Score=264.92 Aligned_cols=134 Identities=46% Similarity=0.824 Sum_probs=118.6
Q ss_pred CCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCC
Q 039252 4 SSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYAS 82 (139)
Q Consensus 4 ~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~ 82 (139)
|+++++..+.+.|||||||+++|.++.|+.+|+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|+.
T Consensus 24 s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~ 103 (204)
T 3ozi_A 24 STNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYAD 103 (204)
T ss_dssp ----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGG
T ss_pred CCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEccccc
Confidence 333444468899999999999999888999999999999999999988 9999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhh-cCCEEEEEEEecCCCccccccCchHHHHHHHHHHhccc
Q 039252 83 SRWCLNELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEK 137 (139)
Q Consensus 83 S~wc~~El~~a~~~~~~-~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~~~~ 137 (139)
|+||++||..++++.+. ++++||||||+++|++||.|+|.||++|+++++++.++
T Consensus 104 S~WCl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~ 159 (204)
T 3ozi_A 104 SKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQ 159 (204)
T ss_dssp CHHHHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHH
T ss_pred CcHHHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHH
Confidence 99999999999999865 57899999999999999999999999999999887654
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-42 Score=254.70 Aligned_cols=122 Identities=52% Similarity=0.856 Sum_probs=104.6
Q ss_pred CceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHH
Q 039252 13 HTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELV 91 (139)
Q Consensus 13 ~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~ 91 (139)
.+.|||||||+++|++++|+.+|+++|+++||++|+|++ +.+|+.|.++|.+||++|+++|+|+|++|++|+||++||.
T Consensus 6 ~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~ 85 (176)
T 3jrn_A 6 ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELV 85 (176)
T ss_dssp -CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHH
T ss_pred CCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHH
Confidence 389999999999999889999999999999999999988 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCEEEEEEEecCCCccccccCchHHHHHHHHHHh
Q 039252 92 KILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134 (139)
Q Consensus 92 ~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~~~~ 134 (139)
.++++.+.++++||||||+++|++|++|+|.||++|.+++++.
T Consensus 86 ~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~ 128 (176)
T 3jrn_A 86 TIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE 128 (176)
T ss_dssp HHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTS
T ss_pred HHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhcc
Confidence 9999988889999999999999999999999999999998873
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.8e-36 Score=217.63 Aligned_cols=121 Identities=21% Similarity=0.354 Sum_probs=110.7
Q ss_pred CCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHH
Q 039252 10 MIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLN 88 (139)
Q Consensus 10 ~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~ 88 (139)
+++.+.|||||||+++|. .+|+.+|..+|+++|+++|+|.+ +.+|+.|.++|.++|++|+++|+|+||+|+.|.||+.
T Consensus 15 ~~~~~~~dvFISy~~~D~-~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWEDK-ADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGGT-TTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccCh-HHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 567899999999999994 57999999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCEEEEEEEecCCCccccccCchHHHHHHHH
Q 039252 89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131 (139)
Q Consensus 89 El~~a~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~f~~~~ 131 (139)
|+..++++...++.+||||||++.|++|+++.|.||++|..+.
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~ 136 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNT 136 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEET
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhc
Confidence 9999998876677899999999999999999999998776543
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=3.4e-30 Score=183.82 Aligned_cols=108 Identities=18% Similarity=0.317 Sum_probs=81.0
Q ss_pred CCCCCCCCCCceeeEEEecccCcchhhHHHHHHHHHhc--CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252 4 SSSSINMIPHTKYDVFLSFRGKDVRHNFISHLNAALCR--KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGY 80 (139)
Q Consensus 4 ~~~~~~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~--~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~ 80 (139)
+|++++ +.|||||||+++|.+ ||.+|..+|++ .|+++|++.+ +.||+.+.++|.++|++|+++|+|+||+|
T Consensus 3 ~~~r~~----k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y 76 (146)
T 3ub2_A 3 GSSRWS----KDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGF 76 (146)
T ss_dssp -CCTTS----SSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHH
T ss_pred CCCCCC----CcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECccc
Confidence 445566 999999999999975 89999999998 5999999999 99999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhcCCEEEEEEEecCCCccc
Q 039252 81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117 (139)
Q Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~v~ 117 (139)
++|+||+.|+..|+++...+..+||||++++.++++.
T Consensus 77 ~~S~wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 77 LQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHCHHHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred ccCHHHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 9999999999999997633344788999988866654
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=2.6e-27 Score=171.16 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=90.0
Q ss_pred CCceeeEEEecccCcchhhHHHHHHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhh-cCcEEEEEEcCCCCCchhHH
Q 039252 12 PHTKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIE-GSKISIVIFSKGYASSRWCL 87 (139)
Q Consensus 12 ~~~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~-~S~~~I~vlS~~~~~S~wc~ 87 (139)
.++.|||||||+++|. .||.+|..+|++. |+++|++.+ +.||+.+.++|.++|+ +|+.+|+|+||+|++|.||+
T Consensus 13 ~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~ 90 (160)
T 2js7_A 13 MPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECD 90 (160)
T ss_dssp CTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHH
T ss_pred CCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHH
Confidence 4689999999999995 5999999999984 799999999 9999999999999999 79999999999999999999
Q ss_pred HHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252 88 NELVKILESK-NKYGQIVVPVFYLVDP 113 (139)
Q Consensus 88 ~El~~a~~~~-~~~~~~iiPV~~~v~p 113 (139)
.|+..|+++. .+++.+||||+|+.-+
T Consensus 91 ~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 91 FQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 9999999875 3445689999997543
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=1.1e-27 Score=171.24 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=91.0
Q ss_pred CCceeeEEEecccCcchhhHHHH-HHHHHhcC--CceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHH
Q 039252 12 PHTKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCL 87 (139)
Q Consensus 12 ~~~~yDVFISys~~D~~~~fv~~-L~~~L~~~--Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~ 87 (139)
+++.|||||||+++|. .||.+ |...|++. |+++|+|.+ +.||+.+.++|.++|++|+++|+|+||+|++|+||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4689999999999996 59986 99999986 999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhcCCEEEEEEEe-cCCCcc
Q 039252 88 NELVKILESK-NKYGQIVVPVFYL-VDPSDV 116 (139)
Q Consensus 88 ~El~~a~~~~-~~~~~~iiPV~~~-v~p~~v 116 (139)
.|+..|+++. .+++.+||||+|+ +.+.++
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAI 110 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence 9999998643 4567789999996 444333
No 7
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=166.10 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=88.2
Q ss_pred ceeeEEEecccCcc---------hhhHHHHHHH-HHh-cCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCC
Q 039252 14 TKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYA 81 (139)
Q Consensus 14 ~~yDVFISys~~D~---------~~~fv~~L~~-~L~-~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~ 81 (139)
+.|||||||+++|. ++.||.+|.. .|+ +.|+++|++.+ +.||+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 57999999999996 3468877555 699 79999999999 999999999999999999999999999997
Q ss_pred -CchhHHHHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252 82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDP 113 (139)
Q Consensus 82 -~S~wc~~El~~a~~~~-~~~~~~iiPV~~~v~p 113 (139)
.|+||..|+..|+++. .+++..||||+++..+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 9999999999999876 5567899999986444
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.93 E-value=4.3e-27 Score=172.74 Aligned_cols=99 Identities=19% Similarity=0.353 Sum_probs=85.7
Q ss_pred CCCceeeEEEecccCcchhhHHH-HHHHHHhc--CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhH
Q 039252 11 IPHTKYDVFLSFRGKDVRHNFIS-HLNAALCR--KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWC 86 (139)
Q Consensus 11 ~~~~~yDVFISys~~D~~~~fv~-~L~~~L~~--~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc 86 (139)
..++.|||||||+++|. .||. +|...|++ +|+++|++.+ +.||+.+.++|.++|++|+++|+|+||+|++|+||
T Consensus 31 ~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc 108 (178)
T 2j67_A 31 KRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWC 108 (178)
T ss_dssp CCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGG
T ss_pred CCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchH
Confidence 46789999999999996 5886 59999998 8999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hhcCCEEEEEEEec
Q 039252 87 LNELVKILESK-NKYGQIVVPVFYLV 111 (139)
Q Consensus 87 ~~El~~a~~~~-~~~~~~iiPV~~~v 111 (139)
..|+..|+++. .+++.+||||+|+.
T Consensus 109 ~~El~~a~~~~~~~~~~~vIpV~~~~ 134 (178)
T 2j67_A 109 HYEFYFAHHNLFHENSDHIILILLEP 134 (178)
T ss_dssp GTHHHHTTCC-------CEEEEESSC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEecC
Confidence 99999998654 44567899999964
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2e-21 Score=168.75 Aligned_cols=100 Identities=18% Similarity=0.317 Sum_probs=90.4
Q ss_pred CCceeeEEEecccCcchhhHH-HHHHHHHhc-----CCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCch
Q 039252 12 PHTKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSR 84 (139)
Q Consensus 12 ~~~~yDVFISys~~D~~~~fv-~~L~~~L~~-----~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~ 84 (139)
+.+.|||||||+++|.. || ..|...||+ .|+++|+++| +.||+.+.++|.++|++||++|+|+|++|++|+
T Consensus 667 ~~~~yd~fisy~~~d~~--~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~ 744 (844)
T 3j0a_A 667 DMYKYDAYLCFSSKDFT--WVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDG 744 (844)
T ss_dssp SCCCCSEEEECCSTTHH--HHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHT
T ss_pred cceeccEEEEeeCCcHH--HHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccCh
Confidence 57899999999999963 55 789999985 5899999999 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-hhcCCEEEEEEEecCC
Q 039252 85 WCLNELVKILESK-NKYGQIVVPVFYLVDP 113 (139)
Q Consensus 85 wc~~El~~a~~~~-~~~~~~iiPV~~~v~p 113 (139)
||..|+..|+++. ++++.+||||+++..|
T Consensus 745 wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~ 774 (844)
T 3j0a_A 745 WCLEAFSYAQGRCLSDLNSALIMVVVGSLS 774 (844)
T ss_dssp STTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence 9999999998875 5567899999997554
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.54 E-value=1.1e-07 Score=64.34 Aligned_cols=73 Identities=8% Similarity=-0.048 Sum_probs=55.7
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHH
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI 93 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a 93 (139)
.+|.+||||+.+| -.+.|...|.+.|+..- + +.|+.|+++|++.++....|+||..|+..|
T Consensus 3 ~~~~lFISh~~~d----~~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVE----DYRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSH----HHHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHh----HHHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 5799999999987 24456666654355432 1 689999999999999999999999999888
Q ss_pred HHHHhhcCCEEEEEEE
Q 039252 94 LESKNKYGQIVVPVFY 109 (139)
Q Consensus 94 ~~~~~~~~~~iiPV~~ 109 (139)
.+ .+.+||-|..
T Consensus 64 ~~----~gkpIigV~~ 75 (111)
T 1eiw_A 64 RK----SSKPIITVRP 75 (111)
T ss_dssp TT----TTCCEEEECC
T ss_pred HH----cCCCEEEEEc
Confidence 65 3446776653
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.42 E-value=0.00025 Score=51.67 Aligned_cols=83 Identities=20% Similarity=0.207 Sum_probs=62.0
Q ss_pred ccCcchhhHHHHHHHHHhcCCceEEeeCC-C----CC----CCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHH
Q 039252 23 RGKDVRHNFISHLNAALCRKKIVTFNDDK-L----NR----GDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKI 93 (139)
Q Consensus 23 s~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~----~~----G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a 93 (139)
..+|. ...+.|+.--++..+--|.|.. . .- -..|...|.+.|.+|+.+|+++|++...|.|...|+..|
T Consensus 27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 45554 3667777777666665566653 2 22 235677889999999999999999999999999999999
Q ss_pred HHHHhhcCCEEEEEEEe
Q 039252 94 LESKNKYGQIVVPVFYL 110 (139)
Q Consensus 94 ~~~~~~~~~~iiPV~~~ 110 (139)
+. +.+.+||-|..+
T Consensus 105 i~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 105 IG---TKGLPVIVIYPD 118 (189)
T ss_dssp TT---TTCCCEEEEETT
T ss_pred HH---hcCCcEEEEECC
Confidence 83 245588888765
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=95.99 E-value=0.023 Score=40.29 Aligned_cols=75 Identities=11% Similarity=0.089 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhcCCceEEeeCC--CCCCCCcchhhHHhhhcCcEEEEEEcC--CCCCchhHHHHHHHHHHHHhhcCCEEE
Q 039252 30 NFISHLNAALCRKKIVTFNDDK--LNRGDEISPSLSSAIEGSKISIVIFSK--GYASSRWCLNELVKILESKNKYGQIVV 105 (139)
Q Consensus 30 ~fv~~L~~~L~~~Gi~vf~d~~--~~~G~~i~~~i~~aI~~S~~~I~vlS~--~~~~S~wc~~El~~a~~~~~~~~~~ii 105 (139)
++.+.+.+.|++.|+.|++..+ ...+..+.++-.++|++|+++|++++| .-..+.-+..|+..|....+ +|+
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK----PVi 102 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK----MVL 102 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC----EEE
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC----EEE
Confidence 6889999999999999988554 111223333347889999999999997 44556668999999886443 665
Q ss_pred EEE
Q 039252 106 PVF 108 (139)
Q Consensus 106 PV~ 108 (139)
-+.
T Consensus 103 ~l~ 105 (161)
T 2f62_A 103 TFT 105 (161)
T ss_dssp EEC
T ss_pred EEE
Confidence 543
No 13
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=91.10 E-value=0.82 Score=32.05 Aligned_cols=86 Identities=9% Similarity=0.055 Sum_probs=56.5
Q ss_pred ceeeEEEecccC-cchhh-HHHHHHHHHhcCCceEEeeCCCCCCC-----C-------cchhhHHhhhcCcEEEEEEcCC
Q 039252 14 TKYDVFLSFRGK-DVRHN-FISHLNAALCRKKIVTFNDDKLNRGD-----E-------ISPSLSSAIEGSKISIVIFSKG 79 (139)
Q Consensus 14 ~~yDVFISys~~-D~~~~-fv~~L~~~L~~~Gi~vf~d~~~~~G~-----~-------i~~~i~~aI~~S~~~I~vlS~~ 79 (139)
++..|||+=.-. +.... ....+.+.|++.| .|+.+....|.. . +...-.+.|++|+++|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 455799985433 22222 4589999999999 886544322221 1 12233478999999999987
Q ss_pred CCCchhHHHHHHHHHHHHhhcCCEEEEE
Q 039252 80 YASSRWCLNELVKILESKNKYGQIVVPV 107 (139)
Q Consensus 80 ~~~S~wc~~El~~a~~~~~~~~~~iiPV 107 (139)
..+.-+..|+..|.... .+|+-+
T Consensus 87 -~~d~Gt~~EiGyA~alg----KPVi~l 109 (165)
T 2khz_A 87 -QPSLGVGYELGRAVALG----KPILCL 109 (165)
T ss_dssp -SCCHHHHHHHHHHHHTC----SSEEEE
T ss_pred -CCCCCHHHHHHHHHHCC----CEEEEE
Confidence 56788899999998643 356544
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=89.99 E-value=1.4 Score=30.79 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCC-----CCCC-------cchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 039252 30 NFISHLNAALCRKKIVTFNDDKLN-----RGDE-------ISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESK 97 (139)
Q Consensus 30 ~fv~~L~~~L~~~Gi~vf~d~~~~-----~G~~-------i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~ 97 (139)
++...+.+.|++.| .|+-..-.. .|.. +.+.-.++|++|+++|++++ ..+.-...|+..|....
T Consensus 19 ~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~alg 94 (152)
T 4fyk_A 19 ALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVALG 94 (152)
T ss_dssp HHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcC
Confidence 67799999999999 664321111 1221 44455678999999999988 66888899999998743
No 15
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=89.82 E-value=1.4 Score=31.00 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=53.0
Q ss_pred hHHHHHHHHHhcC--CceEEeeCC-CC----CCCCcc----hhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHHh
Q 039252 30 NFISHLNAALCRK--KIVTFNDDK-LN----RGDEIS----PSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKN 98 (139)
Q Consensus 30 ~fv~~L~~~L~~~--Gi~vf~d~~-~~----~G~~i~----~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~ 98 (139)
++...+.++|+.. |+.+|...+ -. ++..+. +.=.++|++|+++|.++. ....+..+..|+..|....
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g- 97 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG- 97 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC-
Confidence 5778899999875 899988765 21 222333 334467999999999994 4457889999999998643
Q ss_pred hcCCEEEEEEE
Q 039252 99 KYGQIVVPVFY 109 (139)
Q Consensus 99 ~~~~~iiPV~~ 109 (139)
.+|+.+.-
T Consensus 98 ---kPVi~~~~ 105 (162)
T 3ehd_A 98 ---IPVVALYT 105 (162)
T ss_dssp ---CCEEEECC
T ss_pred ---CEEEEEEc
Confidence 35665543
No 16
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=86.02 E-value=2.6 Score=29.67 Aligned_cols=85 Identities=9% Similarity=0.087 Sum_probs=56.6
Q ss_pred eEEEecc--cCcchhhHHHHHHHHHhcC--CceEEeeCC--C--------CCC--------CCcchhhHHhhhcCcEEEE
Q 039252 17 DVFLSFR--GKDVRHNFISHLNAALCRK--KIVTFNDDK--L--------NRG--------DEISPSLSSAIEGSKISIV 74 (139)
Q Consensus 17 DVFISys--~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~--~--------~~G--------~~i~~~i~~aI~~S~~~I~ 74 (139)
-||+.=. +.+ ..++...+.+.|++. |+.+|.-.+ . ..| ..|.+.=.++|++|+++|+
T Consensus 9 kIYLAGP~F~~~-~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA 87 (167)
T 1s2d_A 9 KIYLGSPFYSDA-QRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVF 87 (167)
T ss_dssp EEEEECCCSSHH-HHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred EEEEECCCCCHH-HHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEE
Confidence 4666532 222 235778999999999 888887654 2 111 1223344567999999999
Q ss_pred EEcCCCCCchhHHHHHHHHHHHHhhcCCEEEEE
Q 039252 75 IFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107 (139)
Q Consensus 75 vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV 107 (139)
++.+ -..+.=+..|+..|....+ +|+-+
T Consensus 88 ~ldg-~~~D~GTa~EiGyA~algK----PVv~l 115 (167)
T 1s2d_A 88 LYDM-DQLDDGSAFXIGFMRAMHK----PVILV 115 (167)
T ss_dssp EEES-SSCCHHHHHHHHHHHHTTC----CEEEE
T ss_pred ECCC-CCCCCCceeehhhHhhCCC----eEEEE
Confidence 9986 3356778899999887433 56555
No 17
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=73.49 E-value=5 Score=27.23 Aligned_cols=62 Identities=11% Similarity=0.095 Sum_probs=40.6
Q ss_pred EEEecccCcchhhHHHHHHHHHhcCCceEEe-------------eCC-CCC---C-C-CcchhhHHhhhcCcEEEEEEcC
Q 039252 18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFN-------------DDK-LNR---G-D-EISPSLSSAIEGSKISIVIFSK 78 (139)
Q Consensus 18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~-------------d~~-~~~---G-~-~i~~~i~~aI~~S~~~I~vlS~ 78 (139)
||||.+..|+. -+..+.+.|.+.|++++- .-. +.. | + .-..+|.+.|.+-++-++|.+|
T Consensus 27 vliSv~d~dK~--~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSFRP--RFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGGHH--HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccchH--HHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 99999877753 344577788888888761 111 111 2 1 0004688899999999999988
Q ss_pred CCC
Q 039252 79 GYA 81 (139)
Q Consensus 79 ~~~ 81 (139)
+-.
T Consensus 105 ~~~ 107 (143)
T 2yvq_A 105 NNN 107 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 763
No 18
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=63.72 E-value=8.9 Score=26.56 Aligned_cols=75 Identities=12% Similarity=-0.028 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCCc----eEEeeCC-CC---------CC-------CCcchhhHHhhhcCcEEEEEEcCCCCCchhHH
Q 039252 29 HNFISHLNAALCRKKI----VTFNDDK-LN---------RG-------DEISPSLSSAIEGSKISIVIFSKGYASSRWCL 87 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi----~vf~d~~-~~---------~G-------~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~ 87 (139)
.+...++.+.|+..|. .+|...+ -. .+ ..+.+.=.++|++|+++|.++.. -..+.=+.
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg-~~~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIP-DEEDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCG-GGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCC-CCCCccHH
Confidence 3577899999999985 6666544 11 11 12233345679999999999873 23467788
Q ss_pred HHHHHHHHHHhhcCCEEEEEE
Q 039252 88 NELVKILESKNKYGQIVVPVF 108 (139)
Q Consensus 88 ~El~~a~~~~~~~~~~iiPV~ 108 (139)
.|+..|....+ +|+-+.
T Consensus 97 ~EiGyA~A~gk----PVv~~~ 113 (157)
T 1f8y_A 97 MELGYALSQGK----YVLLVI 113 (157)
T ss_dssp HHHHHHHHTTC----EEEEEE
T ss_pred HHHHHHHHCCC----eEEEEE
Confidence 99999887543 665543
No 19
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=61.77 E-value=2 Score=27.00 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=16.7
Q ss_pred EecccCcchhhHHHHHHHHHhcCC
Q 039252 20 LSFRGKDVRHNFISHLNAALCRKK 43 (139)
Q Consensus 20 ISys~~D~~~~fv~~L~~~L~~~G 43 (139)
+||++.....||+..|.+.|++.+
T Consensus 22 ~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 22 VSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CCCEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeEcCCCCCHHHHHHHHHHHHhC
Confidence 444545445789999999997654
No 20
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=60.21 E-value=7.9 Score=23.41 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCceEEeeCC-CC---CCCCcchhhHHhhhcCc
Q 039252 33 SHLNAALCRKKIVTFNDDK-LN---RGDEISPSLSSAIEGSK 70 (139)
Q Consensus 33 ~~L~~~L~~~Gi~vf~d~~-~~---~G~~i~~~i~~aI~~S~ 70 (139)
..|...|.+.|+++|.+.+ +. |-..+..++...+...+
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 4677899999999999987 42 44567777777776654
No 21
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=59.24 E-value=18 Score=23.86 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhh
Q 039252 31 FISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIE 67 (139)
Q Consensus 31 fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~ 67 (139)
+...+.+.+++..-.+++-.. + +...+.+.+.+|.+
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~~ 51 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAKK 51 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHHH
Confidence 455666666655545544433 3 33444455554443
No 22
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=57.64 E-value=2.4 Score=27.00 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=19.7
Q ss_pred ceeeEEEecc---------cCcchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFR---------GKDVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys---------~~D~~~~fv~~L~~~L~~~G 43 (139)
..-|.+++|+ +.+...||+..|.+.|++.|
T Consensus 9 ~~aDfL~~yST~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 9 VEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeeecCCCCCeeHHHHHHHHHHhC
Confidence 4556666665 33344678888888887654
No 23
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=55.56 E-value=2.3 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=19.9
Q ss_pred ceeeEEEecccC---------cchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFRGK---------DVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys~~---------D~~~~fv~~L~~~L~~~G 43 (139)
-.-|.+++|+.. +...||+..|.+.|++.|
T Consensus 11 ~~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 11 DEADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TTCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 467888877543 334578888888886643
No 24
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=53.67 E-value=3 Score=26.88 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=19.8
Q ss_pred ceeeEEEeccc---------CcchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFRG---------KDVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys~---------~D~~~~fv~~L~~~L~~~G 43 (139)
..-|.+++|+. .....||+..|.+.|++.|
T Consensus 15 ~~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 15 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 45677777753 3334578888888887644
No 25
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=53.37 E-value=3.1 Score=26.94 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=19.8
Q ss_pred ceeeEEEecc---------cCcchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFR---------GKDVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys---------~~D~~~~fv~~L~~~L~~~G 43 (139)
-.-|.+++|+ +.....||+..|.+.|++.+
T Consensus 13 ~~aDfL~~yST~pG~~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 13 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp SSCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCcEEEecCCCCCHHHHHHHHHHHHHC
Confidence 4567777665 33344678888888887643
No 26
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=46.96 E-value=4.9 Score=26.69 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=19.5
Q ss_pred ceeeEEEecc---------cCcchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFR---------GKDVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys---------~~D~~~~fv~~L~~~L~~~G 43 (139)
-.-|.+++|+ +.....||+..|.+.|++.|
T Consensus 14 ~~aDfLi~yST~pG~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 14 VEADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp TTTTEEEEESSCTTBCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEeCCCCCEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3456666664 33334688888888887644
No 27
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=46.34 E-value=34 Score=23.03 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhh-hcCcEEEEE
Q 039252 29 HNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAI-EGSKISIVI 75 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI-~~S~~~I~v 75 (139)
..+|..+...|...|+++=+|.+ .+++.+...|.++- ...-++|+|
T Consensus 21 ~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 21 KDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 46999999999999999988752 23566666666553 345545554
No 28
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=43.24 E-value=31 Score=27.01 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=38.4
Q ss_pred eeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 15 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
.+||+|---+++ ....+..|.+.|.+.|++|-+|.+ +..+...+..|-. +...+|+|
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~k~~~A~~~g~p~~iii 355 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVC 355 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEE
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 478987765443 346889999999999999999875 2344545555533 45555544
No 29
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=43.14 E-value=30 Score=27.33 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.3
Q ss_pred eeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHh-hhcCcEEEEE
Q 039252 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSA-IEGSKISIVI 75 (139)
Q Consensus 15 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~a-I~~S~~~I~v 75 (139)
.+||+|..-+++. ...+..|.+.|.+.|++|-+|.+ +..+...+..| ..+....|+|
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~~~~iii 389 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM---ERGLSAQLKYASAIGADFAVIF 389 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHCCCCEEEEE
Confidence 4799866544443 35788999999999999998865 23344444444 3345555544
No 30
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=41.11 E-value=6 Score=26.19 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=20.5
Q ss_pred ceeeEEEecccCc---------chhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFRGKD---------VRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys~~D---------~~~~fv~~L~~~L~~~G 43 (139)
-+-|.+++|+..+ ...||+..|.+.|++.+
T Consensus 14 ~eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 14 TRSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SSCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 5567777775433 34678888888887654
No 31
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=41.04 E-value=28 Score=28.03 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=39.2
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcC
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSK 78 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~ 78 (139)
..+||+|..-+++. ...+..+.+.|.+.|++|-+|.+ +..+...+..|-..---.++++.+
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~---~~sl~~q~k~A~~~g~p~~iiiG~ 430 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFE---KRQLGKQFQAADKQGIRFCVIIGA 430 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHHTCCEEEECCH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHcCCCEEEEECc
Confidence 45799987655443 35788999999999999998865 233444555554432234444443
No 32
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=40.95 E-value=73 Score=22.06 Aligned_cols=62 Identities=19% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCceeeE-EEecccCcchhhHHHHHHHHH-hcCCce--EEeeCC-C---CCCCCcchhhH
Q 039252 1 MASSSSSINMIPHTKYDV-FLSFRGKDVRHNFISHLNAAL-CRKKIV--TFNDDK-L---NRGDEISPSLS 63 (139)
Q Consensus 1 ~~~~~~~~~~~~~~~yDV-FISys~~D~~~~fv~~L~~~L-~~~Gi~--vf~d~~-~---~~G~~i~~~i~ 63 (139)
|||-+.+..|.++.+--| |||. ++--|.-.|+.|.+.+ .++|+. +..+.. + ..|.+......
T Consensus 4 ~~~~~~~~~~~~~~M~kVLFVCt-GNiCRSpmAE~i~r~~~~~~gl~~~~~v~SAGt~~~~~G~~~d~~a~ 73 (173)
T 4etm_A 4 MASMTGGQQMGRGSMISVLFVCL-GNICRSPMAEAIFRDLAAKKGLEGKIKADSAGIGGWHIGNPPHEGTQ 73 (173)
T ss_dssp ------CC--CCSSCEEEEEEES-SSSSHHHHHHHHHHHHHHHTTCTTTEEEEEEESSCTTTTCCCCHHHH
T ss_pred cccccCCCcCCCCCccEEEEEeC-CcchhhHHHHHHHHHHHHHcCCCCceEEeccccccCCCCCCCCHHHH
Confidence 777787778888888888 8876 4556667887776665 566653 445544 3 35665554333
No 33
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=38.11 E-value=65 Score=25.91 Aligned_cols=60 Identities=8% Similarity=-0.079 Sum_probs=40.1
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEc
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFS 77 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS 77 (139)
...||||...+++.. ..+-.+...|.+.|++|-++.. +..+...+..|-+.--..++++.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~---~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD---KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS---CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC---CCCHHHHHHHHHHcCCCEEEEEC
Confidence 357888776555543 4677899999999999988743 33466666666664444555554
No 34
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=37.87 E-value=64 Score=24.48 Aligned_cols=64 Identities=6% Similarity=0.052 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCC----ceEEeeCCCCCCCCcchhhHHhhh---cCcEEEEEEcCCCCCc--hhHHHHHHHHHHH
Q 039252 31 FISHLNAALCRKK----IVTFNDDKLNRGDEISPSLSSAIE---GSKISIVIFSKGYASS--RWCLNELVKILES 96 (139)
Q Consensus 31 fv~~L~~~L~~~G----i~vf~d~~~~~G~~i~~~i~~aI~---~S~~~I~vlS~~~~~S--~wc~~El~~a~~~ 96 (139)
.+..|.+.|.++| +.|.+. ++-|.+..++..+.+. -.+++++.+.|.|..+ .-..+++..++..
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~ 135 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEK 135 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHh
Confidence 5667778886543 556555 4556666555444444 2456788899988543 3445566666554
No 35
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=36.13 E-value=95 Score=20.67 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCC
Q 039252 29 HNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYAS 82 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~ 82 (139)
...++.|.+.|...|+.+-+-+ ..+.-.+.+...+.+++ .|++-||.|..
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~---~~~~~~~~~~~~~~~~d-~ii~Gspty~g 64 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVD---LRAVDPQELIEAVSSAR-GIVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE---TTTCCHHHHHHHHHHCS-EEEEECCBSSC
T ss_pred HHHHHHHHHHHHhCCCeEEEEE---CCCCCHHHHHHHHHhCC-EEEEEcCCcCC
Confidence 3688999999998998753211 11222234555566777 46667888864
No 36
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.78 E-value=1.1e+02 Score=21.77 Aligned_cols=67 Identities=13% Similarity=0.145 Sum_probs=41.0
Q ss_pred eEEEecccCc-chhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHH
Q 039252 17 DVFLSFRGKD-VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNEL 90 (139)
Q Consensus 17 DVFISys~~D-~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El 90 (139)
=+||-|.+.+ ....++..+.++|++.|+.+-.- ++.. .-.+.+.+.|++++.+++ |. -+...++..|
T Consensus 30 i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~-~i~~--~~~~~~~~~l~~ad~I~l---~G-G~~~~l~~~L 97 (206)
T 3l4e_A 30 VTFIPTASTVEEVTFYVEAGKKALESLGLLVEEL-DIAT--ESLGEITTKLRKNDFIYV---TG-GNTFFLLQEL 97 (206)
T ss_dssp EEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEEC-CTTT--SCHHHHHHHHHHSSEEEE---CC-SCHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEE-EecC--CChHHHHHHHHhCCEEEE---CC-CCHHHHHHHH
Confidence 3599997652 12358889999999999986432 1111 223456678888886554 33 3444444443
No 37
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=35.58 E-value=20 Score=22.91 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCceE
Q 039252 30 NFISHLNAALCRKKIVT 46 (139)
Q Consensus 30 ~fv~~L~~~L~~~Gi~v 46 (139)
.|+..|...|.++|++|
T Consensus 10 ~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 10 RYVEQLKQALKTRGVKV 26 (94)
T ss_pred HHHHHHHHHHHHcCeee
Confidence 59999999999999999
No 38
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=35.52 E-value=52 Score=25.99 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=38.7
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
...||+|...+++.. ..+..|...|.+.|+++-++.. .+..+...+..|-. +...+|+|
T Consensus 365 ~~~~v~v~~~~~~~~-~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~vii 424 (464)
T 4g84_A 365 TETQVLVASAQKKLL-EERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAII 424 (464)
T ss_dssp CCCCEEEECSSSSCH-HHHHHHHHHHHHTTCCEECCSC--SSCCHHHHHHHHHHHTCCEEEEC
T ss_pred ccceEEEEeCCHHHH-HHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEE
Confidence 567899988665543 5678899999999999977642 22335445555533 45555544
No 39
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=35.27 E-value=62 Score=26.24 Aligned_cols=59 Identities=19% Similarity=0.112 Sum_probs=38.4
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
...||||..-+++. ...+..|...|.+.|+++-++.. .+..+...+..|-. +...+|+|
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~--~~~~l~~q~k~A~~~g~~~~vii 477 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK--KNPKLLNQLQYCEEAGIPLVAII 477 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS--SSCCHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC--CCCCHHHHHHHHHHCCCCEEEEE
Confidence 56799987755543 35678899999999999977642 22335555555533 45555544
No 40
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=34.97 E-value=29 Score=27.91 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=32.1
Q ss_pred CcchhhHHHHHHHHHhcCCceEEeeCC-CC----CCCCcchhhHHhhhcCcEEE
Q 039252 25 KDVRHNFISHLNAALCRKKIVTFNDDK-LN----RGDEISPSLSSAIEGSKISI 73 (139)
Q Consensus 25 ~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~----~G~~i~~~i~~aI~~S~~~I 73 (139)
.|.|++=+..|.+.|.++|.+|...+- .. .|..+.+.+.+++++++++|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 455667778899999999999876655 43 23334567788888998755
No 41
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=34.58 E-value=65 Score=25.80 Aligned_cols=61 Identities=11% Similarity=0.167 Sum_probs=41.3
Q ss_pred cCcchhhHHHHHHHHHhcC-CceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcC-CCCCchh
Q 039252 24 GKDVRHNFISHLNAALCRK-KIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSK-GYASSRW 85 (139)
Q Consensus 24 ~~D~~~~fv~~L~~~L~~~-Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~-~~~~S~w 85 (139)
..|.|++=+..|.+.|.++ |.+|...+- .... .....+.+++++++.+|+...- .|..-.|
T Consensus 329 tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 329 VDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp SCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred CcchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 3466777888999999999 999877665 4332 3345677889999876554332 2444444
No 42
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=34.09 E-value=1.4e+02 Score=24.32 Aligned_cols=54 Identities=13% Similarity=-0.012 Sum_probs=31.8
Q ss_pred cchhhHHHHHHHHHhcCCceEE--eeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCC
Q 039252 26 DVRHNFISHLNAALCRKKIVTF--NDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYA 81 (139)
Q Consensus 26 D~~~~fv~~L~~~L~~~Gi~vf--~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~ 81 (139)
|.-...+..|.+.|.+.|++|. +|++ .+..+...+.+|=..---.++++.++-+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr--~~~siGkK~r~Ad~iGiPy~IiVG~kEl 416 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLET--MQSSLEQLYSKYDEMSILFTVLVTETTL 416 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSS--SCCTTHHHHHHHGGGTCSEEEEECTTST
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCC--cCCCHHHHHHHHHHcCCCEEEEECchhh
Confidence 4345789999999999999999 7653 1222333333332222224555555543
No 43
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=33.58 E-value=34 Score=26.76 Aligned_cols=58 Identities=24% Similarity=0.319 Sum_probs=36.9
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
..+||+|..-+++. ...+..|.+.|.+.|++|-+|.+ +..+...+..|-. +...+|+|
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL---QRKIKGQMKQADRLGAKFTIVI 386 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS---CCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 44789877544332 35788999999999999999865 2334444544433 44544444
No 44
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=32.91 E-value=1.1e+02 Score=23.42 Aligned_cols=98 Identities=14% Similarity=0.226 Sum_probs=55.4
Q ss_pred eEEEecccCcch--hhHHHHHHHHHhcCCceEEeeCC---CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCch-------
Q 039252 17 DVFLSFRGKDVR--HNFISHLNAALCRKKIVTFNDDK---LNRGDEISPSLSSAIEGSKISIVIFSKGYASSR------- 84 (139)
Q Consensus 17 DVFISys~~D~~--~~fv~~L~~~L~~~Gi~vf~d~~---~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~------- 84 (139)
-|||.+-+-|.. .+.+..|.+.|..+|++|..-.. -..+.++...+..++-.... |+|+-..+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G~-IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGE-FVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTTC-EEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCCe-EEEEECCcchHHHHHHHhc
Confidence 488999777752 46788999999999999765332 12234455556666643333 334444332211
Q ss_pred hH-HHHHHHHHH------H-HhhcCCEEEEEEEecCCCc
Q 039252 85 WC-LNELVKILE------S-KNKYGQIVVPVFYLVDPSD 115 (139)
Q Consensus 85 wc-~~El~~a~~------~-~~~~~~~iiPV~~~v~p~~ 115 (139)
.| ..|....++ + ....+.+++-+|++++|.+
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~ee 203 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREM 203 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHH
Confidence 11 111212221 1 2335678888999888775
No 45
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=32.04 E-value=43 Score=26.99 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=40.3
Q ss_pred eeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 15 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
..||+|..-+++. ...+..+.+.|.+.|++|-+|.. -..+..+...+..|-+ +...+|+|
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iii 415 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIF 415 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEE
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEE
Confidence 4688876544433 35788999999999999998864 1125667777777755 44444444
No 46
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=31.95 E-value=45 Score=26.80 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=41.3
Q ss_pred CcchhhHHHHHHHHHhcCCceEEeeCC-CC-------CCCCcchhhHHhhhcCcEEEEEEcC-CCCCchh
Q 039252 25 KDVRHNFISHLNAALCRKKIVTFNDDK-LN-------RGDEISPSLSSAIEGSKISIVIFSK-GYASSRW 85 (139)
Q Consensus 25 ~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~-------~G~~i~~~i~~aI~~S~~~I~vlS~-~~~~S~w 85 (139)
.|.|++=+..|.+.|.++|.+|...+- .. ++-.+.+...+++++++.+|++..- .|..-+|
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 466667778899999999999876654 31 3445556677889999976554332 3554444
No 47
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=31.33 E-value=40 Score=27.52 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=30.8
Q ss_pred eeeEEEecc-c-Cc--chhhHHHHHHHHHhcCCceEEeeCC-CCCCCC
Q 039252 15 KYDVFLSFR-G-KD--VRHNFISHLNAALCRKKIVTFNDDK-LNRGDE 57 (139)
Q Consensus 15 ~yDVFISys-~-~D--~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~ 57 (139)
.|+|+|--- . ++ .-...+..|.+.|.+.|++|-+|.+ -.+|..
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k 361 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK 361 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 478877654 3 31 2346889999999999999999986 444443
No 48
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=31.25 E-value=98 Score=19.36 Aligned_cols=58 Identities=9% Similarity=-0.000 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHhcCCceEE-eeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHH
Q 039252 29 HNFISHLNAALCRKKIVTF-NDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILES 96 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf-~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~ 96 (139)
..+++.+.+.|+..|+.+- ++-. .. ...+.+.+ .|++.+|.|..+.-...++..+++.
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~~~~~~~~~~fl~~ 73 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSEELEDSVVEPFFTD 73 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTTBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCCCCCHHHHHHHHHH
Confidence 3688999999988887753 3321 11 12355555 4556677776543222234444444
No 49
>4hkj_D CPXV203 protein; viral immune evasion proteins, antigen presentation, structu genomics, niaid, national institute of allergy and infectio diseases; 3.00A {Cowpox virus}
Probab=31.14 E-value=21 Score=25.79 Aligned_cols=43 Identities=14% Similarity=0.029 Sum_probs=35.7
Q ss_pred hcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCC
Q 039252 40 CRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYAS 82 (139)
Q Consensus 40 ~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~ 82 (139)
+.+|+++|.+++ -.|++.|...+.+|+-.++.+-+=+|.+=..
T Consensus 49 eGNGfkIfvhD~C~~~~~FIit~~~qavyg~~~~Yie~s~~N~~ 92 (206)
T 4hkj_D 49 EGNGYRVVVHDQCEEPNPFIIATTKQTHFGVTHSYIEFSNSNTG 92 (206)
T ss_dssp EETTEEEEEEESCCSCCCCSCCEEEEEEETTTEEEEEEEESCCC
T ss_pred eCCcEEEEEecccCCCCceEEeechhheeeeeeEEEEEecCCcC
Confidence 467999999998 8899999999999999888887777655433
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=30.54 E-value=1.1e+02 Score=19.73 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=23.7
Q ss_pred CCCCC-cchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHH
Q 039252 53 NRGDE-ISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILE 95 (139)
Q Consensus 53 ~~G~~-i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~ 95 (139)
.||.. +.......+.+++.+|+|++.. ++....++...+.
T Consensus 68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~---~~~s~~~~~~~~~ 108 (181)
T 2efe_B 68 TAGQERYHSLAPMYYRGAAAAIIVFDVT---NQASFERAKKWVQ 108 (181)
T ss_dssp CCCSGGGGGGTHHHHTTCSEEEEEEETT---CHHHHHHHHHHHH
T ss_pred CCCChhhhhhhHHHhccCCEEEEEEECC---CHHHHHHHHHHHH
Confidence 36643 3334456688899999999865 3333444444333
No 51
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=30.05 E-value=85 Score=22.48 Aligned_cols=46 Identities=7% Similarity=0.003 Sum_probs=30.7
Q ss_pred eeeEEEecccCcc--hhhHHHHHHHHHhcCCceEEeeCCCCCCCCcch
Q 039252 15 KYDVFLSFRGKDV--RHNFISHLNAALCRKKIVTFNDDKLNRGDEISP 60 (139)
Q Consensus 15 ~yDVFISys~~D~--~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~ 60 (139)
..-||+.|-..|. ....+..+.+.|++.|+++-+...-..|..+..
T Consensus 183 ~~Pvl~~HG~~D~vVp~~~~~~~~~~L~~~g~~v~~~~y~g~gH~i~~ 230 (246)
T 4f21_A 183 GLPILVCHGTDDQVLPEVLGHDLSDKLKVSGFANEYKHYVGMQHSVCM 230 (246)
T ss_dssp TCCEEEEEETTCSSSCHHHHHHHHHHHHTTTCCEEEEEESSCCSSCCH
T ss_pred CCchhhcccCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCccCH
Confidence 3459999988885 245778899999999998754322112444543
No 52
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=29.58 E-value=1.1e+02 Score=19.40 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=18.3
Q ss_pred CCCC-cchhhHHhhhcCcEEEEEEcCCC
Q 039252 54 RGDE-ISPSLSSAIEGSKISIVIFSKGY 80 (139)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~I~vlS~~~ 80 (139)
||.. +.......+.+++.+|+|++.+-
T Consensus 63 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 63 AGLERFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred CCchhhhcccHhhCcCCCEEEEEEECcC
Confidence 5543 33344566789999999998654
No 53
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=29.51 E-value=24 Score=28.31 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=29.7
Q ss_pred eeeEEEeccc-C-cchhhHHHHHHHHHhcCCceEEeeCC-CCCCC
Q 039252 15 KYDVFLSFRG-K-DVRHNFISHLNAALCRKKIVTFNDDK-LNRGD 56 (139)
Q Consensus 15 ~yDVFISys~-~-D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~ 56 (139)
.++|+|---. + +.....+..|.+.|.+.|++|-+|.+ -.+|.
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~ 409 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGA 409 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHH
Confidence 4688776432 2 22346789999999999999999986 44444
No 54
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=29.47 E-value=74 Score=26.77 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=38.5
Q ss_pred eeeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCC
Q 039252 15 KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKG 79 (139)
Q Consensus 15 ~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~ 79 (139)
.++|+|---+ +.....+..|.+.|.+.|++|-+|.+ +..+...+.+|-..---.++|+.++
T Consensus 539 P~qv~vipi~-~~~~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p~~ivvG~~ 599 (642)
T 1qf6_A 539 PVQVVIMNIT-DSQSEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVPYMLVCGDK 599 (642)
T ss_dssp SSCEEEEESS-HHHHHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCSEEEEECTT
T ss_pred CceEEEEEeC-HHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEECch
Confidence 4678765433 33346889999999999999999986 2234444444433222345555554
No 55
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=29.03 E-value=31 Score=25.62 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=39.7
Q ss_pred CCCCCceeeEEEecccCcchhhHHHHHHHHHhcCCceE-EeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCch
Q 039252 9 NMIPHTKYDVFLSFRGKDVRHNFISHLNAALCRKKIVT-FNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSR 84 (139)
Q Consensus 9 ~~~~~~~yDVFISys~~D~~~~fv~~L~~~L~~~Gi~v-f~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~ 84 (139)
.|++.+-||.|-+-.-.+. +..|.++|+..|+.| |+..+ ...+-+.. .+.+.+-+++|+. ++-...
T Consensus 16 ~~~~~kg~~~~~~~~y~~g----~~~~~~aL~~~~~~V~~i~~~~~~~~fP~~---~~~L~~yDvIIl~---d~~~~~ 83 (248)
T 3soz_A 16 HMIHSKGFDSFTSSKYEEG----ADYLLSCLRQGNIDVDYMPAHIVQTRFPQT---AEALACYDAIVIS---DIGSNT 83 (248)
T ss_dssp EEEEEETTEEEEEEEECCC----SHHHHHHHTTTTCEEEEEETTHHHHSCCCS---HHHHHTCSEEEEE---SCCHHH
T ss_pred eeeEeecccccccchhhhh----HHHHHHHHhcCCceeEEeCchhhhhhCCCC---hHHHhcCCEEEEc---CCCcch
Confidence 4678899999986533321 235789999999986 55443 22121222 2567777765554 555433
No 56
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=28.74 E-value=1.7e+02 Score=21.31 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=34.2
Q ss_pred HHHhcCCceE-EeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCC-CchhHHHHHHHHHHHH
Q 039252 37 AALCRKKIVT-FNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYA-SSRWCLNELVKILESK 97 (139)
Q Consensus 37 ~~L~~~Gi~v-f~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~-~S~wc~~El~~a~~~~ 97 (139)
..++..|.++ +++-.-..+-.+ +.+.+++.. ..+|++.+|+.- ...+...++..+.+..
T Consensus 113 ~~~~~~g~~~~~~~~~~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~ 173 (361)
T 3ftb_A 113 INAKKHGVSVVFSYLDENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLKLA 173 (361)
T ss_dssp HHHHHTTCEEEEEECCTTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEeecCcccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHHHh
Confidence 3445567774 443221112223 678888887 667778888654 3445566776666643
No 57
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=28.55 E-value=84 Score=26.31 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=36.6
Q ss_pred eeEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHh-hhcCcEEEEE
Q 039252 16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSA-IEGSKISIVI 75 (139)
Q Consensus 16 yDVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~a-I~~S~~~I~v 75 (139)
++|+|---+++.....+..|.+.|.+.|++|-+|.+ +..+...+.+| ..+...+|+|
T Consensus 546 ~qv~vip~~~~~~~~~a~~i~~~Lr~~Gi~v~~D~~---~~~~g~k~~~a~~~g~p~~iiv 603 (645)
T 1nyr_A 546 KQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDR---NEKMGYKIREAQMQKIPYQIVV 603 (645)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCS---SCCHHHHHHHHHHHTCSEEEEE
T ss_pred ceEEEEEcccHHHHHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHhcCCCEEEEE
Confidence 678775433133346889999999999999999976 23344455544 3344544444
No 58
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=28.25 E-value=60 Score=26.60 Aligned_cols=60 Identities=15% Similarity=0.249 Sum_probs=37.7
Q ss_pred eeEEEeccc-C-cchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEEEcCC
Q 039252 16 YDVFLSFRG-K-DVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVIFSKG 79 (139)
Q Consensus 16 yDVFISys~-~-D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~vlS~~ 79 (139)
++|+|---+ + +.....+..|.+.|.+.|++|-+|.+ +..+...+..|-. +... ++++.++
T Consensus 471 ~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~---~~~~g~k~~~a~~~g~p~-~iivG~~ 533 (572)
T 2j3l_A 471 FDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDR---NERAGVKFADADLIGCPI-RITVGKK 533 (572)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECS---SCCHHHHHHHHHHHCCSE-EEEECGG
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCC---CCCHhHHHHHHHhcCCCE-EEEEccc
Confidence 788876543 2 22245788999999999999999976 2234445554433 4444 4444443
No 59
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=27.76 E-value=1.4e+02 Score=19.85 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=19.0
Q ss_pred CCCC-cchhhHHhhhcCcEEEEEEcCCCC
Q 039252 54 RGDE-ISPSLSSAIEGSKISIVIFSKGYA 81 (139)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~I~vlS~~~~ 81 (139)
||.. +.......+.+++.+|+|++.+-.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~ 108 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQ 108 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCT
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCH
Confidence 5643 333445668899999999986543
No 60
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=27.53 E-value=92 Score=24.30 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=29.7
Q ss_pred CcchhhHHHHHHHHHhcCCceEEeeCC-CCCCCC-----cchhhHHhhhcCcEEEE
Q 039252 25 KDVRHNFISHLNAALCRKKIVTFNDDK-LNRGDE-----ISPSLSSAIEGSKISIV 74 (139)
Q Consensus 25 ~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~-----i~~~i~~aI~~S~~~I~ 74 (139)
.|.|++=+..|.+.|.++|.+|...+- +..... +.+.+.+++++++.+|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 355666777788888888887766554 433211 12334556666666554
No 61
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=27.46 E-value=64 Score=22.47 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=23.8
Q ss_pred EEecccCcch--hhHHHHHHHHHhcCCceEEee
Q 039252 19 FLSFRGKDVR--HNFISHLNAALCRKKIVTFND 49 (139)
Q Consensus 19 FISys~~D~~--~~fv~~L~~~L~~~Gi~vf~d 49 (139)
||.+-+-|.. .+.+..|.+.|+.+|+++-.-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 7888766642 467889999999999987543
No 62
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=27.27 E-value=39 Score=26.46 Aligned_cols=58 Identities=17% Similarity=0.334 Sum_probs=38.1
Q ss_pred ceeeEEEecccCcchhhHHHHHHHHHhcC--CceEEeeCCCCCCCCcchhhHHh-hhcCcEEEEE
Q 039252 14 TKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFNDDKLNRGDEISPSLSSA-IEGSKISIVI 75 (139)
Q Consensus 14 ~~yDVFISys~~D~~~~fv~~L~~~L~~~--Gi~vf~d~~~~~G~~i~~~i~~a-I~~S~~~I~v 75 (139)
..+||+|..-+++. ...+..|.+.|.+. |++|-+|.+ +..+...+..| ..+....|+|
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~---~~~~~~~~~~a~~~g~p~~iii 386 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG---GGNFKKQFARADKWGARVAVVL 386 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCS---CCCHHHHHHHHHHHTCSEEEEE
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 45789887755433 35788999999998 999998865 23344445444 3345555544
No 63
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=27.04 E-value=1e+02 Score=20.54 Aligned_cols=27 Identities=7% Similarity=0.066 Sum_probs=17.6
Q ss_pred CCCCcchhhHHhhhcCcEEEEEEcCCC
Q 039252 54 RGDEISPSLSSAIEGSKISIVIFSKGY 80 (139)
Q Consensus 54 ~G~~i~~~i~~aI~~S~~~I~vlS~~~ 80 (139)
+|..-...+...+..++.+|+|++-+-
T Consensus 77 ~G~~~~~~~~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 77 ADLDTPRNCERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp CC---CCCTHHHHTTCSEEEEEEETTC
T ss_pred CCCCcchhHHHHHhhCCEEEEEEECCC
Confidence 554333335567888999999998773
No 64
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=26.96 E-value=57 Score=26.55 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=36.9
Q ss_pred cCcchhhHHHHHHHHHhcCCceEEeeCC-CC--CCCCcchhhHHhhhcCcEEEEE
Q 039252 24 GKDVRHNFISHLNAALCRKKIVTFNDDK-LN--RGDEISPSLSSAIEGSKISIVI 75 (139)
Q Consensus 24 ~~D~~~~fv~~L~~~L~~~Gi~vf~d~~-~~--~G~~i~~~i~~aI~~S~~~I~v 75 (139)
..|.|++=+..|.+.|.++|.+|...+- .. ++..+...+.+++++++.+|++
T Consensus 367 tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~ 421 (478)
T 3g79_A 367 SDDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVL 421 (478)
T ss_dssp CSCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEEC
T ss_pred CcchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEe
Confidence 3466777788899999999999877665 32 3333445678889999875554
No 65
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.54 E-value=1.3e+02 Score=19.26 Aligned_cols=83 Identities=16% Similarity=0.274 Sum_probs=48.7
Q ss_pred EEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 039252 18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESK 97 (139)
Q Consensus 18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~ 97 (139)
|-+-|+ .|+ +-......-...+|+++-.- +.-+.+.+.|.+-+..-...|+|.--+ ..+|.. .|+...
T Consensus 4 vivvfs-tde--etlrkfkdiikkngfkvrtv---rspqelkdsieelvkkynativvvvvd--dkewae----kairfv 71 (134)
T 2l69_A 4 VIVVFS-TDE--ETLRKFKDIIKKNGFKVRTV---RSPQELKDSIEELVKKYNATIVVVVVD--DKEWAE----KAIRFV 71 (134)
T ss_dssp EEEECC-CCH--HHHHHHHHHHHHTTCEEEEE---CSHHHHHHHHHHHTTCCCCEEEEEECS--SHHHHH----HHHHHH
T ss_pred EEEEEe-CCH--HHHHHHHHHHHhcCceEEEe---cCHHHHHHHHHHHHHHhCCeEEEEEEc--cHHHHH----HHHHHH
Confidence 344565 343 35567778888999998653 333456677777777555444433221 245654 344444
Q ss_pred hhcCCEEEEEEEecC
Q 039252 98 NKYGQIVVPVFYLVD 112 (139)
Q Consensus 98 ~~~~~~iiPV~~~v~ 112 (139)
+..+..++.|+|+-+
T Consensus 72 kslgaqvliiiydqd 86 (134)
T 2l69_A 72 KSLGAQVLIIIYDQD 86 (134)
T ss_dssp HHHCCCCEEEEECSC
T ss_pred HhcCCeEEEEEEeCc
Confidence 556666777888644
No 66
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=26.15 E-value=33 Score=22.99 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHhcCCceE
Q 039252 29 HNFISHLNAALCRKKIVT 46 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~v 46 (139)
..|+..|+..|.++|++|
T Consensus 8 ~~fi~~Lk~~LK~rGvkV 25 (124)
T 2lpy_A 8 ERYVEQLKQALKTRGVKV 25 (124)
T ss_dssp HHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCeee
Confidence 469999999999999987
No 67
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=26.02 E-value=2.4e+02 Score=22.13 Aligned_cols=66 Identities=12% Similarity=0.100 Sum_probs=39.9
Q ss_pred eEEEecccCc--chhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCch
Q 039252 17 DVFLSFRGKD--VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSR 84 (139)
Q Consensus 17 DVFISys~~D--~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~ 84 (139)
-|-|-|.+.= + +..|+.|.+.|.+.|+.+-.-+-......-.+++.+.+.+|+ .|++-||.|...-
T Consensus 267 ~v~I~Y~S~yGnT-e~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~-~ivlGspT~~~~~ 334 (410)
T 4dik_A 267 KVTVIYDSMYGFV-ENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSE-ALIFGVSTYEAEI 334 (410)
T ss_dssp EEEEEEECSSSHH-HHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCS-EEEEEECCTTSSS
T ss_pred ceeeEEecccChH-HHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCC-eEEEEeCCcCCcC
Confidence 4666664331 2 258899999999999885432110111111245667777777 5667789987653
No 68
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=25.88 E-value=1.3e+02 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=29.6
Q ss_pred CcEEEEEEcCCCCCchhHHHHHHHHHHHHhhcCCEEEEEEEecCCCc
Q 039252 69 SKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSD 115 (139)
Q Consensus 69 S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~~v~p~~ 115 (139)
.+..|+|-|=|+..+ .+|..++.....-...++-|++..-|..
T Consensus 100 ~k~LVIIDSLN~l~~----~~L~~FlsSi~sP~~sLv~vYH~DvP~~ 142 (270)
T 4a8j_B 100 KKHMVIIDSLNYIST----EYITRFLSEIASPHCTMVATYHKDIKDE 142 (270)
T ss_dssp CCEEEEESCGGGSCG----GGHHHHHHHHCCTTEEEEEEEETTSCCC
T ss_pred cceEEEEecCcchhh----hhHHHHHHHhhcCCcEEEEEecCCCCCC
Confidence 367899999999986 5677777665434457777777544443
No 69
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=25.59 E-value=89 Score=26.70 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=37.3
Q ss_pred eeeEEEecccCc-chhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 15 KYDVFLSFRGKD-VRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 15 ~yDVFISys~~D-~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
.++|+|---+++ .-...+..|.+.|.+.|++|.+|.+ +..+...+.+|=. +...+|+|
T Consensus 559 P~qV~Vipl~~~~~~~~~A~~l~~~Lr~~Gi~v~~D~~---~~sigkk~k~Ad~~G~p~~IiI 618 (693)
T 2zt5_A 559 PFKCSVLPLSQNQEFMPFVKELSEALTRHGVSHKVDDS---SGSIGRRYARTDEIGVAFGVTI 618 (693)
T ss_dssp SCSEEEEESCCSTTTHHHHHHHHHHHHHTTCCEEECCC---CSCHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEecCcHHHHHHHHHHHHHHHHCCCEEEEECC---CCCHHHHHHHHHHcCCCEEEEE
Confidence 378887654443 2346889999999999999999975 2234444544433 34444444
No 70
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=25.30 E-value=73 Score=23.76 Aligned_cols=69 Identities=12% Similarity=0.025 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhcCCceEEeeCC-CCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHHhh
Q 039252 29 HNFISHLNAALCRKKIVTFNDDK-LNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNK 99 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf~d~~-~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~ 99 (139)
.+++.++.+.|...|+.+-..++ +--|--..-. -.-.+.++=||-+|-+...++--..+|..++...++
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vPL~--~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lrd 164 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLI--KMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRD 164 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHHHH--HHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhhHH--HhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 36999999999999997664333 4444332211 112234455677777766677767799999977543
No 71
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=24.76 E-value=52 Score=26.13 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=31.2
Q ss_pred EEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCC--C-CCcchhhHHhhhcCc
Q 039252 18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNR--G-DEISPSLSSAIEGSK 70 (139)
Q Consensus 18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~--G-~~i~~~i~~aI~~S~ 70 (139)
|-|=|+..|....++..+.+++++.|+.+-....+.. + .++...+.+.|+.+.
T Consensus 188 V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 188 VSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTT
T ss_pred EEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCC
Confidence 4444554444456788999999999998766554332 2 233333335566443
No 72
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=24.67 E-value=1.6e+02 Score=19.58 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHhcCCceEEeeCCCCCCCC-cchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252 29 HNFISHLNAALCRKKIVTFNDDKLNRGDE-ISPSLSSAIEGSKISIVIFSKGYASS 83 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~-i~~~i~~aI~~S~~~I~vlS~~~~~S 83 (139)
...++.+.+.|...|+.+-+-+ ..+. -.+.+...+.+++ .|++-||.|...
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~---~~~~~~~~~~~~~~~~~d-~ii~Gspty~g~ 70 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVD---LGAAVDLQELRELVGRCT-GLVIGMSPAASA 70 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---SSSCCCHHHHHHHHHTEE-EEEEECCBTTSH
T ss_pred HHHHHHHHHHHHHCCCeEEEEE---CcCcCCHHHHHHHHHhCC-EEEEEcCcCCCC
Confidence 3688999999999998753321 1121 2334555566666 566678998743
No 73
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.58 E-value=96 Score=23.54 Aligned_cols=54 Identities=2% Similarity=-0.201 Sum_probs=32.6
Q ss_pred eEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCc
Q 039252 17 DVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSK 70 (139)
Q Consensus 17 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~ 70 (139)
-|.|-|...+-.......+.+.|++.|+++-....+.+|..=...+...|..++
T Consensus 166 ~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~ 219 (419)
T 3h5l_A 166 KIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADP 219 (419)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSC
T ss_pred EEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcC
Confidence 455556443323457788888999999998665545555433334555565443
No 74
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=24.27 E-value=58 Score=20.76 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=22.1
Q ss_pred cccCcchhhHHHHHHHHHhcCCceEEeeCC
Q 039252 22 FRGKDVRHNFISHLNAALCRKKIVTFNDDK 51 (139)
Q Consensus 22 ys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~ 51 (139)
|+..|. .-+..+...|+..||.+|+.+.
T Consensus 27 ~ra~d~--v~a~~~k~LLe~aGI~~fv~De 54 (97)
T 2hfv_A 27 LRTNDA--VLLSAVGALLDGADIGHLVLDQ 54 (97)
T ss_dssp EEECCH--HHHHHHHHHHHHTTCCEECCSC
T ss_pred eecCCH--HHHHHHHHHHHhCCCCEEEcCC
Confidence 456664 3667888888999999999887
No 75
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=23.48 E-value=83 Score=25.63 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=37.4
Q ss_pred eeeEEEecccC-c-chhhHHHHHHHHHhcCC-ceEEeeCCCCCCCCcchhhHHhhh-cCcEEEEE
Q 039252 15 KYDVFLSFRGK-D-VRHNFISHLNAALCRKK-IVTFNDDKLNRGDEISPSLSSAIE-GSKISIVI 75 (139)
Q Consensus 15 ~yDVFISys~~-D-~~~~fv~~L~~~L~~~G-i~vf~d~~~~~G~~i~~~i~~aI~-~S~~~I~v 75 (139)
.++|+|---++ + .-...+..|.+.|.+.| ++|-+|.+ ..+...+.+|-. ....+|+|
T Consensus 398 P~~v~Vip~~~~~~~~~~~a~~l~~~Lr~~G~i~v~~D~~----~sig~k~~~ad~~g~p~~iiv 458 (505)
T 1ati_A 398 PIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDT----GNIGKAYRRHDEVGTPFAVTV 458 (505)
T ss_dssp SCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCC----SCHHHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEEcCCccHHHHHHHHHHHHHHhccCCEEEEECCC----CCHHHHHHHHHHCCCCEEEEE
Confidence 47898765443 1 22467899999999999 99998864 345555555533 44444444
No 76
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=23.13 E-value=1.3e+02 Score=22.76 Aligned_cols=55 Identities=5% Similarity=-0.016 Sum_probs=36.2
Q ss_pred EEEecccCcchhhHHHHHHHHHhcCCc-eE-EeeCCCCCCCCcchhhHHhhhcCcEEEE
Q 039252 18 VFLSFRGKDVRHNFISHLNAALCRKKI-VT-FNDDKLNRGDEISPSLSSAIEGSKISIV 74 (139)
Q Consensus 18 VFISys~~D~~~~fv~~L~~~L~~~Gi-~v-f~d~~~~~G~~i~~~i~~aI~~S~~~I~ 74 (139)
+||-+++.|. ...++..++.|++.|+ .+ .++-+ .+.+.-.+++.+.|++++.+.+
T Consensus 60 ~~IptAs~~~-~~~~~~~~~~f~~lG~~~v~~L~i~-~r~~a~~~~~~~~l~~ad~I~v 116 (291)
T 3en0_A 60 GIIPSASREP-LLIGERYQTIFSDMGVKELKVLDIR-DRAQGDDSGYRLFVEQCTGIFM 116 (291)
T ss_dssp EEECTTCSSH-HHHHHHHHHHHHHHCCSEEEECCCC-SGGGGGCHHHHHHHHHCSEEEE
T ss_pred EEEeCCCCCh-HHHHHHHHHHHHHcCCCeeEEEEec-CccccCCHHHHHHHhcCCEEEE
Confidence 5888888774 4677888889988898 44 44332 1222334567788998885443
No 77
>4h0c_A Phospholipase/carboxylesterase; PSI-biology, midwest center for structural genomics, MCSG, hydrolase; HET: CIT; 1.62A {Dyadobacter fermentans}
Probab=23.03 E-value=1.1e+02 Score=21.04 Aligned_cols=47 Identities=17% Similarity=0.040 Sum_probs=30.9
Q ss_pred eeeEEEecccCcch--hhHHHHHHHHHhcCCceEEeeCCCCCCCCcchh
Q 039252 15 KYDVFLSFRGKDVR--HNFISHLNAALCRKKIVTFNDDKLNRGDEISPS 61 (139)
Q Consensus 15 ~yDVFISys~~D~~--~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~ 61 (139)
..-||+.|-.+|.. ......+.+.|++.|..+-+...-..|..+..+
T Consensus 151 ~~Pvl~~hG~~D~~vp~~~~~~~~~~L~~~g~~v~~~~ypg~gH~i~~~ 199 (210)
T 4h0c_A 151 QTPVFISTGNPDPHVPVSRVQESVTILEDMNAAVSQVVYPGRPHTISGD 199 (210)
T ss_dssp TCEEEEEEEESCTTSCHHHHHHHHHHHHHTTCEEEEEEEETCCSSCCHH
T ss_pred CCceEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCcCHH
Confidence 34699999888852 346788999999999987543211124445443
No 78
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=22.91 E-value=1e+02 Score=22.55 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=49.1
Q ss_pred eEEEecccCcchhhHH-HHHHHHHhcCCceEE-eeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHH
Q 039252 17 DVFLSFRGKDVRHNFI-SHLNAALCRKKIVTF-NDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKIL 94 (139)
Q Consensus 17 DVFISys~~D~~~~fv-~~L~~~L~~~Gi~vf-~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~ 94 (139)
-|-+.--..|.. ..- .-+...|+.+|+.|. +.... -.+++.+++.+.+.-++.+|-....+ ...+...+
T Consensus 125 ~vlla~~~gd~H-diG~~iva~~L~~~G~~Vi~LG~~v-----p~e~l~~~~~~~~~d~V~lS~l~~~~---~~~~~~~i 195 (258)
T 2i2x_B 125 TVVCHVAEGDVH-DIGKNIVTALLRANGYNVVDLGRDV-----PAEEVLAAVQKEKPIMLTGTALMTTT---MYAFKEVN 195 (258)
T ss_dssp EEEEEECTTCCC-CHHHHHHHHHHHHTTCEEEEEEEEC-----CSHHHHHHHHHHCCSEEEEECCCTTT---TTHHHHHH
T ss_pred eEEEEeCCCCcc-HHHHHHHHHHHHHCCCEEEECCCCC-----CHHHHHHHHHHcCCCEEEEEeeccCC---HHHHHHHH
Confidence 354544444543 444 455666789999985 43221 23467777776666666666554433 23444444
Q ss_pred HHHhhcCCEEEEEEEecCC
Q 039252 95 ESKNKYGQIVVPVFYLVDP 113 (139)
Q Consensus 95 ~~~~~~~~~iiPV~~~v~p 113 (139)
+..+..+.. +||+....+
T Consensus 196 ~~l~~~~~~-~~v~vGG~~ 213 (258)
T 2i2x_B 196 DMLLENGIK-IPFACGGGA 213 (258)
T ss_dssp HHHHTTTCC-CCEEEESTT
T ss_pred HHHHhcCCC-CcEEEECcc
Confidence 444344444 889887543
No 79
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=22.91 E-value=1.9e+02 Score=20.96 Aligned_cols=53 Identities=13% Similarity=-0.113 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhcCCceEE-eeCC-CC--CCC----CcchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252 30 NFISHLNAALCRKKIVTF-NDDK-LN--RGD----EISPSLSSAIEGSKISIVIFSKGYASS 83 (139)
Q Consensus 30 ~fv~~L~~~L~~~Gi~vf-~d~~-~~--~G~----~i~~~i~~aI~~S~~~I~vlS~~~~~S 83 (139)
..++.+.+.|++.|+.+- +|-. +. ..+ +-...+.+.|.+++ .|++.||-|..+
T Consensus 52 ~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD-~iI~~sP~Yn~s 112 (247)
T 2q62_A 52 LLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSE-GQVWVSPERHGA 112 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCS-EEEEEEECSSSS
T ss_pred HHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCC-EEEEEeCCCCCC
Confidence 466777777877888753 3322 21 111 01245677888888 555668888765
No 80
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=22.11 E-value=61 Score=25.85 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=29.4
Q ss_pred EEEecccCcchhhHHHHHHHHHhcCCceEEeeCCC--CCCCCcchhhHHhhhc
Q 039252 18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKL--NRGDEISPSLSSAIEG 68 (139)
Q Consensus 18 VFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~--~~G~~i~~~i~~aI~~ 68 (139)
|.|-|+..|-...++..+.+++++.|+.+-....+ .++..-...+...|..
T Consensus 200 V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 200 VSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred EEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 44445544444567788889999999887655442 2332222334445554
No 81
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=21.76 E-value=1.4e+02 Score=25.62 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCcEEEEEEcCCCCCchhHHHHHHHHHHHHhhcCCEEEEEEE
Q 039252 30 NFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFY 109 (139)
Q Consensus 30 ~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~~~I~vlS~~~~~S~wc~~El~~a~~~~~~~~~~iiPV~~ 109 (139)
..+..|.++|+++|+.|-... +..+.+...-.++++..+|+|-+-. ..++...++... .=||||+
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~------s~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~~----~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPN------DRDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKMN----ENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCS------SHHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHHC----TTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeC------CHHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHhC----CCCCEEE
Confidence 367899999999999997543 2333444444678888888875432 234444444332 3478887
Q ss_pred ecC
Q 039252 110 LVD 112 (139)
Q Consensus 110 ~v~ 112 (139)
-.+
T Consensus 82 ~~~ 84 (715)
T 3n75_A 82 FAN 84 (715)
T ss_dssp ECC
T ss_pred Eec
Confidence 433
No 82
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=21.44 E-value=55 Score=19.67 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHhcCCce
Q 039252 28 RHNFISHLNAALCRKKIV 45 (139)
Q Consensus 28 ~~~fv~~L~~~L~~~Gi~ 45 (139)
...|..+|++.|++.|.+
T Consensus 49 ~DDFs~QLr~EL~k~~~k 66 (70)
T 3t5x_B 49 EDDFSNQLRAELEKHGYK 66 (70)
T ss_dssp CSHHHHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHHHHhhhc
Confidence 356999999999998765
No 83
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=21.29 E-value=1.4e+02 Score=22.24 Aligned_cols=54 Identities=4% Similarity=-0.003 Sum_probs=33.6
Q ss_pred eEEEecccCcchhhHHHHHHHHHhcCCceEEeeCCCCCCCCcchhhHHhhhcCc
Q 039252 17 DVFLSFRGKDVRHNFISHLNAALCRKKIVTFNDDKLNRGDEISPSLSSAIEGSK 70 (139)
Q Consensus 17 DVFISys~~D~~~~fv~~L~~~L~~~Gi~vf~d~~~~~G~~i~~~i~~aI~~S~ 70 (139)
.|.|-|...+-....+..+.+.|++.|+++-....+.+|..=...+...|..+.
T Consensus 143 ~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~l~~i~~~~ 196 (374)
T 3n0x_A 143 TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTTTTDFTAVGQRLFDAL 196 (374)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCCCCccHHHHHHHHHhcC
Confidence 566666544333456788899999999987655445555433335555666554
No 84
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=20.58 E-value=1.3e+02 Score=20.63 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHhcCCceE-EeeCC-CCCCC----------------CcchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252 29 HNFISHLNAALCRKKIVT-FNDDK-LNRGD----------------EISPSLSSAIEGSKISIVIFSKGYASS 83 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~v-f~d~~-~~~G~----------------~i~~~i~~aI~~S~~~I~vlS~~~~~S 83 (139)
...++.+.+.|+..|..+ .++-. ..+.. ++...+.+.+.+++ .|++-||-|..+
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD-~ii~gsP~y~~~ 92 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAE-AIVFSSPTRFGG 92 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCC-EEEEEcCccccC
Confidence 357788888888888765 33322 21100 11124556777888 566668888754
No 85
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=20.47 E-value=58 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=20.8
Q ss_pred ceeeEEEecccC---------cchhhHHHHHHHHHhcCC
Q 039252 14 TKYDVFLSFRGK---------DVRHNFISHLNAALCRKK 43 (139)
Q Consensus 14 ~~yDVFISys~~---------D~~~~fv~~L~~~L~~~G 43 (139)
..-|.+|+|+.. ....||+..|.+.|.+.|
T Consensus 206 ~~aD~LiayST~pG~vS~R~~~~GSwFIqaL~~~l~~~~ 244 (310)
T 2nn3_C 206 VHADFLIAFSTVPGYFSWRNTTRGSWFMQALCEELRYAG 244 (310)
T ss_dssp CSTTEEEEECCCCCEEESSSSEEEEHHHHHHHHHHHTTT
T ss_pred CCCCEEEEEeCCCCceeecCCCCCCHHHHHHHHHHHhhC
Confidence 345777777533 234689999999998765
No 86
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=20.41 E-value=2e+02 Score=19.19 Aligned_cols=52 Identities=2% Similarity=0.011 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHhc-CCceEE-eeCC-CCCCC------------CcchhhHHhhhcCcEEEEEEcCCCCCc
Q 039252 29 HNFISHLNAALCR-KKIVTF-NDDK-LNRGD------------EISPSLSSAIEGSKISIVIFSKGYASS 83 (139)
Q Consensus 29 ~~fv~~L~~~L~~-~Gi~vf-~d~~-~~~G~------------~i~~~i~~aI~~S~~~I~vlS~~~~~S 83 (139)
...++.+.+.|+. .|..+- ++-. ..++. ... . .+.+.+++ .|++-||.|..+
T Consensus 16 ~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~l~~aD-~ii~gsP~y~~~ 82 (198)
T 3b6i_A 16 ETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVA-T-PQELADYD-AIIFGTPTRFGN 82 (198)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBC-C-GGGGGGCS-EEEEEEEEETTE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchh-h-HHHHHHCC-EEEEEeChhcCC
Confidence 3577888889988 887652 2322 21110 010 1 45667777 566678888654
No 87
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=20.35 E-value=1.8e+02 Score=18.59 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=19.1
Q ss_pred CCCC-cchhhHHhhhcCcEEEEEEcCCCC
Q 039252 54 RGDE-ISPSLSSAIEGSKISIVIFSKGYA 81 (139)
Q Consensus 54 ~G~~-i~~~i~~aI~~S~~~I~vlS~~~~ 81 (139)
||.. +.......+++++.+|+|++..-.
T Consensus 64 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (178)
T 2hxs_A 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNY 92 (178)
T ss_dssp TTCCTTCTTHHHHHTTCSEEEEEEETTCH
T ss_pred CCCccccchhhHHHhhCCEEEEEEECCCH
Confidence 5543 333445668899999999997643
No 88
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.06 E-value=2e+02 Score=19.17 Aligned_cols=54 Identities=4% Similarity=-0.069 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCceEE-eeCC-CCCCC---------Cc-chhhHHhhhcCcEEEEEEcCCCCCc
Q 039252 29 HNFISHLNAALCRKKIVTF-NDDK-LNRGD---------EI-SPSLSSAIEGSKISIVIFSKGYASS 83 (139)
Q Consensus 29 ~~fv~~L~~~L~~~Gi~vf-~d~~-~~~G~---------~i-~~~i~~aI~~S~~~I~vlS~~~~~S 83 (139)
...++.+.+.|+..|+.+- ++-. ..+.. .. ...+.+.+.+++ .|++.||.|..+
T Consensus 20 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD-~ii~gsP~y~~~ 85 (200)
T 2a5l_A 20 AEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCA-GLALGSPTRFGN 85 (200)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCS-EEEEEEECBTTB
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCC-EEEEEcChhccC
Confidence 3577888888888887652 2322 11000 00 002355677777 455668888754
Done!