BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039253
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 189 bits (479), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 130/174 (74%), Gaps = 23/174 (13%)
Query: 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQ 75
AADR+ NQ+LTEMDG+S KK +F+IG TNRPDIIDPA+LRPGRLDQLIYIPLP EKSR+
Sbjct: 596 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 76 IFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQ- 134
I KA LRKSPV+KDVDLE LA+ T GFSGAD+TEICQRACK A RE IE++IRR + +Q
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 715
Query: 135 -PEAIE----DEVAEIKAEHFEESMKYACKS-----------------QSRGFG 166
P A+E D V EI+ +HFEE+M++A +S QSRGFG
Sbjct: 716 NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 188 bits (478), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/174 (62%), Positives = 130/174 (74%), Gaps = 23/174 (13%)
Query: 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQ 75
AADR+ NQ+LTEMDG+S KK +F+IG TNRPDIIDPA+LRPGRLDQLIYIPLP EKSR+
Sbjct: 596 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 655
Query: 76 IFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQ- 134
I KA LRKSPV+KDVDLE LA+ T GFSGAD+TEICQRACK A RE IE++IRR + +Q
Sbjct: 656 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 715
Query: 135 -PEAIE----DEVAEIKAEHFEESMKYACKS-----------------QSRGFG 166
P A+E D V EI+ +HFEE+M++A +S QSRGFG
Sbjct: 716 NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/153 (67%), Positives = 125/153 (81%), Gaps = 6/153 (3%)
Query: 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQ 75
AADR+ NQ+LTEMDG+S KK +F+IG TNRPDIIDPA+LRPGRLDQLIYIPLP EKSR+
Sbjct: 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVA 193
Query: 76 IFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQ- 134
I KA LRKSPV+KDVDLE LA+ T GFSGAD+TEICQRACK A RE IE++IRR + +Q
Sbjct: 194 ILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQT 253
Query: 135 -PEAIE----DEVAEIKAEHFEESMKYACKSQS 162
P A+E D V EI+ +HFEE+M++A +S S
Sbjct: 254 NPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVS 286
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/111 (47%), Positives = 74/111 (66%)
Query: 11 SGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVE 70
+G R QLL EMDG A+ + +IG TNRPDI+DPA+LRPGR D++I +P P E
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDE 190
Query: 71 KSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
K RL+I K RK +++DV+LE++A+ T+G GA++ IC A +A RE
Sbjct: 191 KGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE 241
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 96/156 (61%), Gaps = 17/156 (10%)
Query: 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRL 74
GA+ R+ NQLLTEMDGL A++ +F++ TNRPDIIDPA+LRPGRLD+ +++ LP RL
Sbjct: 125 GASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL 184
Query: 75 QIFKACLR---KSPVSKDVDLEKLAQFTQ--GFSGADITEICQRACKDATREEIENDIRR 129
I K + K P+ DV+LE +A + ++GAD++ + + A A R+E+ R+
Sbjct: 185 AILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA---RQ 241
Query: 130 RKGKQPEAIEDEVAEIKA--EHFEESMKYACKSQSR 163
+ G +E E+K +HFEE+ K S S+
Sbjct: 242 KSG-------NEKGELKVSHKHFEEAFKKVRSSISK 270
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
QRG+G GG D + NQ+L EMDG + I VI TNRPD++DPALLRPGR D+ +
Sbjct: 119 QRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVV 178
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATR 120
+ LP + R QI K +R+ P++ D+D +A+ T GFSGAD+ + A A R
Sbjct: 179 VGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
RG+G GG D + NQLL EMDG +K+ I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 123 HRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
+ P R +I + R P+++DV+LE +A+ T GF GAD+ + A A RE
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
RG+G GG D + NQLL EMDG +K+ I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 123 HRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIV 182
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
+ P R +I + R P+++DV+LE +A+ T GF GAD+ + A A RE
Sbjct: 183 VDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE 239
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
+RGSG GG D + NQLL EMDG I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 138 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD 106
I P K R QI + R P+++DVDL LA+ T GF GAD
Sbjct: 198 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
+RGSG GG D + NQLL EMDG I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD 106
I P K R QI + R P+++DVDL LA+ T GF GAD
Sbjct: 207 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
+RGSG GG D + NQLL EMDG I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD 106
I P K R QI + R P+++DVDL LA+ T GF GAD
Sbjct: 207 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/102 (52%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 8 QRGSGAGGAAD---RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIY 64
+RGSG GG D + NQLL EMDG I V+ TNRPDI+DPALLRPGR D+ I
Sbjct: 123 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 182
Query: 65 IPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD 106
I P K R QI + R P+++DVDL LA+ T GF GAD
Sbjct: 183 IDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 224
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 22 NQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81
NQLL EMDG+ + V+ TNR DI+D AL+RPGRLD+ ++I LP + R +IF+ L
Sbjct: 131 NQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHL 190
Query: 82 RKSPVSKDVDL--EKLAQFTQGFSGADITEICQRACKDATRE 121
+ +++ ++LA+ T GFSGADI IC A A RE
Sbjct: 191 KSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 76/123 (61%), Gaps = 4/123 (3%)
Query: 22 NQLLTEMDGLSAKKT-IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80
NQLL EMDG ++ + V+ TNRP+I+DPAL+RPGR D+ + + P R++I K
Sbjct: 136 NQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVH 195
Query: 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIED 140
++ ++ DV+L+++A+ T G +GAD+ I A A R + ++R++ K EA+E
Sbjct: 196 IKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-QKEVRQQHLK--EAVER 252
Query: 141 EVA 143
+A
Sbjct: 253 GIA 255
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLI 63
+I +R G RI +QLLT MDGL + + V+ TNRP+ IDPAL R GR D+ +
Sbjct: 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367
Query: 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEI 123
I +P RL+I + + ++ DVDLE++A T G GAD+ +C A A R+++
Sbjct: 368 DIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427
Query: 124 E 124
+
Sbjct: 428 D 428
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 10 GSGAGGA-ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLP 68
GSG G + R +LL ++DG K I +I TNR DI+DPALLRPGR+D+ I P P
Sbjct: 260 GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319
Query: 69 VEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
+R +I + RK +++ ++L K+A+ G SGAD+ +C A A RE
Sbjct: 320 SVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE 372
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 63/113 (55%)
Query: 10 GSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPV 69
G+ A R +LLT+MDG +I TNRPD +DPALLRPGRLD+ + IPLP
Sbjct: 294 GTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Query: 70 EKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREE 122
E RL+IFK K + + D E + + GF+GADI A A R++
Sbjct: 354 EAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD 406
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 59/98 (60%)
Query: 23 QLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82
+LL ++DG S+ + V+ TNR D++DPALLR GRLD+ I PLP E SR QI + R
Sbjct: 307 ELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366
Query: 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATR 120
K D++ ++LA+ T F+GA + + A A R
Sbjct: 367 KMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 11 SGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIP-LPV 69
+G+ RI +LLT+MDG + VI TNR D +DPALLRPGRLD+ I P L
Sbjct: 286 TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345
Query: 70 EKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
+ R IF K ++ + DL+ L SGA I I Q A A R+
Sbjct: 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%)
Query: 10 GSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPV 69
G+G R +L+T++DG + I V+ TNRP+ +DPALLRPGR+D+ + LP
Sbjct: 322 GAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPD 381
Query: 70 EKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATR 120
+ R IF+ + V + + E +++ +GA++ +C A A R
Sbjct: 382 LEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDG--LSAKKTIFVIGVTNRPDIIDPALLRPGRLDQ 61
S++ QRG G ++ RI + L ++DG S++ I V+G TNRP ID A R RL +
Sbjct: 187 SLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVK 244
Query: 62 LIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATR 120
+YIPLP +R QI + K + ++E++ Q + FSGAD+T++C+ A R
Sbjct: 245 RLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIR 304
Query: 121 EEIENDI 127
DI
Sbjct: 305 SLQTADI 311
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 90/167 (53%), Gaps = 22/167 (13%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAK--KTIFVIGVTNRPDIIDPALLRPGRLDQ 61
S++ +R G A+ R+ + L E DG+ + + V+G TNRP +D A+LR R +
Sbjct: 218 SLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIK 275
Query: 62 LIYIPLPVEKSRLQIFKA--CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDAT 119
+Y+ LP E++RL + K C + SP+++ +L +LA+ T G+SG+D+T + + A
Sbjct: 276 RVYVSLPNEETRLLLLKNLLCKQGSPLTQK-ELAQLARMTDGYSGSDLTALAKDAALGPI 334
Query: 120 REEIENDIRRRKGKQPEAIED----EVAEIKAEHFEESMKYACKSQS 162
RE +PE +++ E+ I+ F ES+K +S S
Sbjct: 335 RE-----------LKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVS 370
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Query: 11 SGAGGAAD--RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLP 68
S +GG + R +LL ++DG + + VI TN+ + +DPAL+RPGR+D+ I P
Sbjct: 294 SNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353
Query: 69 VEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
++ +I K +S+DV+LE L SGADI +C A A RE
Sbjct: 354 DLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 4/120 (3%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKT-IFVIGVTNRPDIIDPALLRPGRLDQL 62
S+ R AA RI + L +M G+ I V+G TN P ++D A+ R R ++
Sbjct: 238 SLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKR 295
Query: 63 IYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
IYIPLP +R +F+ L + S + D ++L + T G+SGADI+ I + A R+
Sbjct: 296 IYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 9 RGSGAGGAADRIPNQLLTEMDGL-SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67
RG G A+ RI +LL +M+G+ + + + V+G TN P +D A+ R R ++ IYIPL
Sbjct: 159 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 216
Query: 68 PVEKSRLQIFKACLRKSP-VSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P +R +F+ + +P V D L T+G+SG+DI + + A R+
Sbjct: 217 PDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKT-IFVIGVTNRPDIIDPALLRPGRLDQL 62
S+ R AA RI + L +M G+ I V+G TN P ++D A+ R R ++
Sbjct: 116 SLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKR 173
Query: 63 IYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
IYIPLP +R +FK L + S + D +L + T G+SGADI+ I + A R+
Sbjct: 174 IYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 9 RGSGAGGAADRIPNQLLTEMDGL-SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67
RG G A+ RI +LL +M+G+ + + + V+G TN P +D A+ R R ++ IYIPL
Sbjct: 144 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 201
Query: 68 PVEKSRLQIFKACLRKSP-VSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P +R +F+ + +P V D L T+G+SG+DI + + A R+
Sbjct: 202 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 256
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 9 RGSGAGGAADRIPNQLLTEMDGL-SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67
RG G A+ RI +LL +M+G+ + + + V+G TN P +D A+ R R ++ IYIPL
Sbjct: 135 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 192
Query: 68 PVEKSRLQIFKACLRKSP-VSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P +R +F+ + +P V D L T+G+SG+DI + + A R+
Sbjct: 193 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 247
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Query: 9 RGSGAGGAADRIPNQLLTEMDGL-SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67
RG G A+ RI +LL +M+G+ + + + V+G TN P +D A+ R R ++ IYIPL
Sbjct: 126 RGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPL 183
Query: 68 PVEKSRLQIFKACLRKSP-VSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P +R +F+ + +P V D L T+G+SG+DI + + A R+
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 238
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 16 AADRIPNQLLTEMDGLSAKK---TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKS 72
A+ R+ + L E DGL I V+ TNRP +D A LR R + +Y+ LP E++
Sbjct: 136 ASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQT 193
Query: 73 RLQIFKACLRK--SPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
R + L+K SP+ + L +LA+ T G+SG+D+T + + A + RE
Sbjct: 194 RELLLNRLLQKQGSPLDTEA-LRRLAKITDGYSGSDLTALAKDAALEPIRE 243
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 66 PLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P P E++RL I K RK +++ ++L K+A+ G SGA++ +C A A RE
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALRE 56
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 68 PVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
P E++RL I K RK +++ ++L K+A+ G SGA++ +C A A RE
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 64
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 76 IFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATRE 121
IF K +S++VDLE SGADI ICQ + A RE
Sbjct: 9 IFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF VANILLYL-
Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme Vanillyl-
Alcohol Oxidase In The Apo Form Complexed By Adp
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1W1K|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
pdb|1W1K|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Ile238thr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1W1L|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
pdb|1W1L|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: Phe454tyr Mutant
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1W1J|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
pdb|1W1J|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase: The505ser Mutant
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1W1M|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
pdb|1W1M|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase: Glu502gly Mutant
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-alcohol
Oxidase
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 WSIVIQRGSGAGGAADRIPNQLLTEM 28
W I I R SG GGAA R+ ++ +M
Sbjct: 98 WPISIGRNSGYGGAAPRVSGSVVLDM 123
>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
pdb|1Y8E|A Chain A, Vcp:suramin Complex
pdb|1Y8E|B Chain B, Vcp:suramin Complex
Length = 244
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 118 ATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSRGFGDEFGFCE 173
T + N +R+ P I++ +I F S+ Y+C S G+ +CE
Sbjct: 53 GTGWTLFNQCIKRRCPSPRDIDNGQLDIGGVDFGSSITYSCNSGYHLIGESKSYCE 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,022,562
Number of Sequences: 62578
Number of extensions: 234154
Number of successful extensions: 811
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 740
Number of HSP's gapped (non-prelim): 57
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)