Query 039253
Match_columns 199
No_of_seqs 195 out of 1683
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:50:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 5.5E-33 1.2E-37 252.5 13.3 145 3-164 537-681 (693)
2 COG1222 RPT1 ATP-dependent 26S 100.0 7.6E-32 1.6E-36 231.3 13.7 140 3-161 254-396 (406)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 3.1E-31 6.6E-36 239.4 15.1 158 3-163 614-775 (802)
4 KOG0738 AAA+-type ATPase [Post 100.0 1.7E-31 3.7E-36 231.0 9.5 170 3-176 314-489 (491)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 1.6E-29 3.5E-34 228.3 14.3 168 3-170 292-507 (802)
6 KOG0736 Peroxisome assembly fa 100.0 7.2E-28 1.6E-32 221.9 15.1 159 3-163 774-938 (953)
7 KOG0734 AAA+-type ATPase conta 99.9 1.5E-27 3.3E-32 213.0 10.4 137 3-158 406-542 (752)
8 TIGR01243 CDC48 AAA family ATP 99.9 6.3E-26 1.4E-30 214.9 14.7 160 4-164 557-717 (733)
9 KOG0737 AAA+-type ATPase [Post 99.9 1.4E-25 3.1E-30 193.2 11.8 157 3-161 196-363 (386)
10 KOG0735 AAA+-type ATPase [Post 99.9 3.7E-25 8E-30 202.8 13.3 124 3-126 770-893 (952)
11 KOG0739 AAA+-type ATPase [Post 99.9 3.2E-26 6.9E-31 193.2 5.1 159 3-163 235-422 (439)
12 COG0464 SpoVK ATPases of the A 99.9 6.4E-25 1.4E-29 199.5 14.1 142 3-162 345-488 (494)
13 KOG0741 AAA+-type ATPase [Post 99.9 5.5E-26 1.2E-30 202.9 5.4 156 3-162 334-495 (744)
14 PTZ00454 26S protease regulato 99.9 2.6E-24 5.6E-29 190.9 14.1 138 4-160 249-389 (398)
15 KOG0731 AAA+-type ATPase conta 99.9 1.9E-24 4.1E-29 201.3 12.7 159 3-180 413-583 (774)
16 KOG0728 26S proteasome regulat 99.9 2E-24 4.2E-29 179.0 11.0 138 3-159 250-390 (404)
17 COG0465 HflB ATP-dependent Zn 99.9 1.7E-24 3.7E-29 198.1 11.3 156 3-177 252-417 (596)
18 KOG0652 26S proteasome regulat 99.9 2E-24 4.3E-29 179.9 9.1 139 3-160 274-415 (424)
19 CHL00195 ycf46 Ycf46; Provisio 99.9 1.6E-23 3.5E-28 189.8 14.4 137 5-163 330-469 (489)
20 PRK03992 proteasome-activating 99.9 2.6E-23 5.7E-28 184.2 14.4 142 4-164 235-379 (389)
21 KOG0726 26S proteasome regulat 99.9 6.9E-24 1.5E-28 178.7 9.0 140 3-161 288-430 (440)
22 PRK10733 hflB ATP-dependent me 99.9 2.3E-23 5E-28 194.8 13.4 140 4-162 255-397 (644)
23 KOG0730 AAA+-type ATPase [Post 99.9 2.2E-23 4.7E-28 190.1 12.4 138 3-166 288-425 (693)
24 PTZ00361 26 proteosome regulat 99.9 1.7E-22 3.7E-27 180.9 13.4 138 4-160 287-427 (438)
25 TIGR01241 FtsH_fam ATP-depende 99.9 1.9E-22 4.2E-27 183.6 13.0 137 4-159 158-297 (495)
26 KOG0727 26S proteasome regulat 99.9 2.4E-22 5.3E-27 166.8 11.0 137 3-158 258-397 (408)
27 COG1223 Predicted ATPase (AAA+ 99.9 7.3E-22 1.6E-26 164.2 10.6 125 17-162 235-360 (368)
28 KOG0729 26S proteasome regulat 99.9 5.1E-22 1.1E-26 165.9 9.0 140 3-161 280-422 (435)
29 CHL00176 ftsH cell division pr 99.9 1.8E-21 4E-26 181.3 12.2 135 4-157 286-423 (638)
30 KOG0740 AAA+-type ATPase [Post 99.9 4.6E-22 9.9E-27 176.0 7.1 155 2-164 254-411 (428)
31 TIGR01242 26Sp45 26S proteasom 99.9 1.2E-20 2.5E-25 165.8 14.5 135 4-157 226-363 (364)
32 KOG0732 AAA+-type ATPase conta 99.8 4.2E-21 9E-26 183.3 10.2 172 3-177 373-545 (1080)
33 CHL00206 ycf2 Ycf2; Provisiona 99.8 9.4E-21 2E-25 188.0 12.9 122 20-160 1753-1880(2281)
34 TIGR03689 pup_AAA proteasome A 99.8 4.3E-20 9.3E-25 167.9 13.9 139 3-156 299-477 (512)
35 TIGR01243 CDC48 AAA family ATP 99.8 8.7E-20 1.9E-24 173.1 15.2 162 4-165 282-443 (733)
36 KOG0651 26S proteasome regulat 99.7 2.7E-18 5.7E-23 145.8 4.6 137 3-158 235-374 (388)
37 PLN00020 ribulose bisphosphate 99.7 4.3E-16 9.3E-21 136.0 14.7 117 3-122 222-355 (413)
38 COG0464 SpoVK ATPases of the A 99.4 4.8E-12 1E-16 115.3 14.2 144 3-160 86-229 (494)
39 KOG0736 Peroxisome assembly fa 99.3 4.9E-12 1.1E-16 118.0 10.2 161 15-177 509-677 (953)
40 KOG0735 AAA+-type ATPase [Post 99.3 6.6E-12 1.4E-16 116.4 10.7 146 18-178 521-673 (952)
41 KOG0742 AAA+-type ATPase [Post 99.2 3.3E-11 7.2E-16 106.2 9.3 107 3-113 453-587 (630)
42 KOG0743 AAA+-type ATPase [Post 99.2 7.6E-11 1.6E-15 104.8 8.6 93 19-112 319-414 (457)
43 KOG0744 AAA+-type ATPase [Post 99.1 3.5E-10 7.5E-15 97.2 6.7 124 11-157 272-414 (423)
44 CHL00181 cbbX CbbX; Provisiona 98.5 3.1E-06 6.6E-11 72.5 12.2 125 16-152 143-281 (287)
45 PF00004 AAA: ATPase family as 98.4 5E-07 1.1E-11 66.9 5.7 62 5-67 70-132 (132)
46 TIGR02880 cbbX_cfxQ probable R 98.2 1.9E-05 4E-10 67.5 11.2 127 16-153 142-281 (284)
47 TIGR00635 ruvB Holliday juncti 98.1 4.9E-05 1.1E-09 64.9 10.9 81 35-118 128-209 (305)
48 TIGR02881 spore_V_K stage V sp 98.0 0.00011 2.4E-09 61.7 11.8 103 17-123 126-243 (261)
49 PRK00080 ruvB Holliday junctio 97.9 5.5E-05 1.2E-09 65.6 9.3 83 35-120 149-232 (328)
50 TIGR02902 spore_lonB ATP-depen 97.9 3.4E-05 7.4E-10 71.4 7.7 95 37-155 235-330 (531)
51 TIGR00763 lon ATP-dependent pr 97.7 0.00013 2.8E-09 70.4 8.5 86 35-123 462-559 (775)
52 TIGR00362 DnaA chromosomal rep 97.7 0.00029 6.3E-09 62.8 10.2 94 22-118 219-318 (405)
53 PRK00411 cdc6 cell division co 97.6 0.0003 6.5E-09 62.1 8.6 123 19-163 157-288 (394)
54 TIGR02928 orc1/cdc6 family rep 97.6 0.00053 1.2E-08 59.8 10.0 103 35-160 164-277 (365)
55 PRK00149 dnaA chromosomal repl 97.6 0.00043 9.3E-09 62.7 9.3 113 22-157 231-349 (450)
56 PRK11034 clpA ATP-dependent Cl 97.5 0.00023 5E-09 68.5 6.4 82 33-117 312-408 (758)
57 PRK06645 DNA polymerase III su 97.3 0.0014 3E-08 60.4 9.6 94 18-117 142-236 (507)
58 TIGR02397 dnaX_nterm DNA polym 97.3 0.0015 3.2E-08 56.8 8.9 92 19-116 132-224 (355)
59 PRK14961 DNA polymerase III su 97.3 0.0023 5E-08 56.4 10.1 91 19-115 134-225 (363)
60 PRK06893 DNA replication initi 97.3 0.0012 2.7E-08 54.4 7.8 91 23-114 112-207 (229)
61 TIGR02639 ClpA ATP-dependent C 97.3 0.00077 1.7E-08 64.7 7.4 69 34-105 309-387 (731)
62 PRK09087 hypothetical protein; 97.1 0.0031 6.8E-08 52.1 8.3 112 23-157 105-222 (226)
63 PRK05563 DNA polymerase III su 97.0 0.0051 1.1E-07 57.4 10.3 94 17-116 132-226 (559)
64 PRK07940 DNA polymerase III su 97.0 0.0036 7.8E-08 56.0 8.8 85 19-112 132-216 (394)
65 PRK08903 DnaA regulatory inact 96.9 0.0078 1.7E-07 49.2 9.4 111 22-155 108-224 (227)
66 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0046 1E-07 50.1 7.9 95 23-120 111-211 (226)
67 PRK14962 DNA polymerase III su 96.9 0.0057 1.2E-07 56.0 9.0 88 20-113 133-221 (472)
68 PRK12422 chromosomal replicati 96.9 0.0075 1.6E-07 54.8 9.5 102 36-157 236-343 (445)
69 PRK14088 dnaA chromosomal repl 96.9 0.0051 1.1E-07 55.8 8.3 93 23-118 215-313 (440)
70 PRK08451 DNA polymerase III su 96.8 0.0097 2.1E-07 55.3 10.0 96 17-118 130-226 (535)
71 PRK07003 DNA polymerase III su 96.8 0.0078 1.7E-07 57.9 9.4 93 17-115 132-225 (830)
72 PRK14086 dnaA chromosomal repl 96.7 0.0078 1.7E-07 56.6 8.8 92 23-118 398-496 (617)
73 PRK14956 DNA polymerase III su 96.7 0.008 1.7E-07 55.1 8.5 92 17-114 134-226 (484)
74 PRK08084 DNA replication initi 96.7 0.007 1.5E-07 50.2 7.4 74 38-114 134-213 (235)
75 PRK12323 DNA polymerase III su 96.7 0.0045 9.7E-08 58.6 6.6 93 17-115 137-230 (700)
76 PRK08727 hypothetical protein; 96.6 0.012 2.6E-07 48.7 8.4 66 39-110 129-201 (233)
77 PRK14953 DNA polymerase III su 96.6 0.016 3.6E-07 53.2 9.5 92 18-115 133-225 (486)
78 PRK07994 DNA polymerase III su 96.5 0.016 3.5E-07 54.9 9.4 91 17-113 132-223 (647)
79 PRK06620 hypothetical protein; 96.5 0.016 3.5E-07 47.5 8.2 86 24-113 102-192 (214)
80 PRK12402 replication factor C 96.5 0.043 9.3E-07 47.1 11.1 86 20-114 141-227 (337)
81 TIGR03345 VI_ClpV1 type VI sec 96.4 0.0047 1E-07 60.4 5.4 68 33-103 313-390 (852)
82 PRK14951 DNA polymerase III su 96.4 0.024 5.3E-07 53.5 9.8 94 17-116 137-231 (618)
83 PRK14963 DNA polymerase III su 96.4 0.038 8.1E-07 51.1 10.9 92 17-114 129-221 (504)
84 PRK14958 DNA polymerase III su 96.4 0.015 3.3E-07 53.7 8.3 94 17-116 132-226 (509)
85 PRK14087 dnaA chromosomal repl 96.4 0.018 3.8E-07 52.4 8.5 114 22-157 226-348 (450)
86 PRK00440 rfc replication facto 96.4 0.028 6.1E-07 47.8 9.3 89 20-114 118-207 (319)
87 CHL00195 ycf46 Ycf46; Provisio 96.4 0.023 5E-07 52.3 9.1 77 34-115 113-190 (489)
88 PRK10787 DNA-binding ATP-depen 96.3 0.015 3.3E-07 56.4 8.2 141 21-177 437-609 (784)
89 PRK14964 DNA polymerase III su 96.3 0.016 3.5E-07 53.3 8.0 95 17-117 129-224 (491)
90 PRK05642 DNA replication initi 96.3 0.025 5.4E-07 46.9 8.4 91 22-115 117-213 (234)
91 PRK14960 DNA polymerase III su 96.2 0.021 4.5E-07 54.3 8.2 93 17-115 131-224 (702)
92 TIGR00678 holB DNA polymerase 96.2 0.02 4.3E-07 45.4 7.0 73 19-101 111-183 (188)
93 TIGR03015 pepcterm_ATPase puta 96.2 0.058 1.3E-06 44.8 10.1 85 52-158 178-267 (269)
94 PRK09111 DNA polymerase III su 96.1 0.047 1E-06 51.5 10.1 92 18-115 146-238 (598)
95 TIGR02903 spore_lon_C ATP-depe 96.1 0.035 7.6E-07 52.5 9.3 106 37-158 324-431 (615)
96 PRK06647 DNA polymerase III su 96.1 0.025 5.4E-07 52.9 8.0 92 17-114 132-224 (563)
97 PRK08691 DNA polymerase III su 96.0 0.035 7.6E-07 53.0 8.6 94 17-116 132-226 (709)
98 PRK06964 DNA polymerase III su 96.0 0.015 3.3E-07 51.1 5.8 56 20-80 148-203 (342)
99 PRK10865 protein disaggregatio 95.9 0.011 2.4E-07 57.9 5.1 49 33-84 304-357 (857)
100 PRK05896 DNA polymerase III su 95.9 0.028 6.1E-07 52.8 7.6 89 19-113 134-223 (605)
101 PRK14965 DNA polymerase III su 95.9 0.026 5.5E-07 53.0 7.4 89 18-112 133-222 (576)
102 PRK14959 DNA polymerase III su 95.9 0.027 5.9E-07 53.2 7.3 89 19-113 134-223 (624)
103 PRK14970 DNA polymerase III su 95.8 0.078 1.7E-06 46.5 9.7 91 19-115 123-214 (367)
104 PRK14949 DNA polymerase III su 95.8 0.053 1.1E-06 53.2 9.2 93 17-115 132-225 (944)
105 COG2812 DnaX DNA polymerase II 95.6 0.06 1.3E-06 49.8 8.4 96 16-117 131-227 (515)
106 PRK07764 DNA polymerase III su 95.6 0.066 1.4E-06 52.3 9.1 91 17-113 133-224 (824)
107 PRK13342 recombination factor 95.6 0.091 2E-06 47.1 9.4 85 21-114 109-200 (413)
108 PRK07133 DNA polymerase III su 95.6 0.063 1.4E-06 51.5 8.7 90 19-114 133-223 (725)
109 PTZ00112 origin recognition co 95.6 0.041 9E-07 54.0 7.2 76 34-112 900-980 (1164)
110 TIGR03346 chaperone_ClpB ATP-d 95.5 0.02 4.4E-07 56.0 5.2 69 33-104 299-377 (852)
111 PRK06305 DNA polymerase III su 95.5 0.09 2E-06 47.9 9.1 89 19-113 136-225 (451)
112 PRK04132 replication factor C 95.4 0.16 3.4E-06 49.7 10.9 79 18-101 644-723 (846)
113 PRK04195 replication factor C 95.4 0.082 1.8E-06 48.4 8.5 87 19-115 117-204 (482)
114 PRK05707 DNA polymerase III su 95.4 0.063 1.4E-06 46.9 7.2 80 17-104 119-198 (328)
115 PRK14969 DNA polymerase III su 95.3 0.099 2.2E-06 48.5 8.8 94 17-116 132-226 (527)
116 PRK13407 bchI magnesium chelat 95.3 0.3 6.5E-06 42.8 11.2 63 17-81 141-216 (334)
117 TIGR02030 BchI-ChlI magnesium 95.1 0.27 5.8E-06 43.2 10.3 63 17-81 144-219 (337)
118 PRK14952 DNA polymerase III su 95.0 0.15 3.2E-06 48.0 9.0 91 17-113 131-222 (584)
119 PF00308 Bac_DnaA: Bacterial d 95.0 0.092 2E-06 43.1 6.8 92 21-115 116-213 (219)
120 COG0593 DnaA ATPase involved i 95.0 0.16 3.4E-06 45.8 8.6 84 35-121 208-297 (408)
121 PRK09112 DNA polymerase III su 95.0 0.15 3.3E-06 44.9 8.5 80 19-104 156-235 (351)
122 PRK14957 DNA polymerase III su 94.9 0.17 3.7E-06 47.2 9.0 92 17-114 132-224 (546)
123 PF09336 Vps4_C: Vps4 C termin 94.8 0.009 1.9E-07 39.5 0.3 21 143-163 28-48 (62)
124 PRK14950 DNA polymerase III su 94.6 0.3 6.5E-06 45.9 10.0 90 19-114 135-225 (585)
125 TIGR00764 lon_rel lon-related 94.3 0.083 1.8E-06 49.9 5.6 103 36-159 268-393 (608)
126 TIGR02640 gas_vesic_GvpN gas v 94.2 0.24 5.1E-06 41.7 7.7 43 36-81 151-198 (262)
127 PHA02544 44 clamp loader, smal 94.2 0.11 2.4E-06 44.4 5.7 55 22-81 119-173 (316)
128 PLN03025 replication factor C 94.1 0.29 6.4E-06 42.2 8.2 77 20-101 115-192 (319)
129 smart00350 MCM minichromosome 93.8 0.57 1.2E-05 43.3 10.0 62 19-82 315-401 (509)
130 PRK14971 DNA polymerase III su 93.7 0.44 9.5E-06 45.2 9.2 91 18-114 135-226 (614)
131 COG0714 MoxR-like ATPases [Gen 93.7 0.19 4.2E-06 43.5 6.3 63 18-82 126-204 (329)
132 PRK14955 DNA polymerase III su 93.6 0.2 4.4E-06 44.7 6.5 90 20-115 143-233 (397)
133 PRK11034 clpA ATP-dependent Cl 93.3 0.68 1.5E-05 45.0 9.9 104 18-123 571-720 (758)
134 CHL00081 chlI Mg-protoporyphyr 93.3 1 2.2E-05 39.8 10.2 63 17-81 157-232 (350)
135 PF05673 DUF815: Protein of un 93.3 0.81 1.8E-05 38.5 9.1 67 21-87 124-213 (249)
136 PRK13341 recombination factor 93.3 0.37 8.1E-06 46.5 8.0 77 35-115 136-222 (725)
137 PRK07993 DNA polymerase III su 93.2 0.34 7.3E-06 42.4 7.1 78 18-104 122-199 (334)
138 PRK08769 DNA polymerase III su 93.2 0.46 1E-05 41.4 7.8 81 18-108 127-207 (319)
139 PRK14948 DNA polymerase III su 92.9 0.56 1.2E-05 44.5 8.6 89 18-112 135-224 (620)
140 TIGR03346 chaperone_ClpB ATP-d 92.9 1.1 2.3E-05 44.2 10.6 104 18-123 681-830 (852)
141 PRK06090 DNA polymerase III su 92.8 0.25 5.4E-06 43.1 5.6 57 18-79 122-178 (319)
142 PRK14954 DNA polymerase III su 92.5 0.7 1.5E-05 43.9 8.6 87 20-112 143-230 (620)
143 TIGR02031 BchD-ChlD magnesium 92.5 1.4 3E-05 41.6 10.5 64 17-82 97-175 (589)
144 TIGR02639 ClpA ATP-dependent C 92.4 0.95 2.1E-05 43.7 9.6 104 18-123 567-716 (731)
145 PRK05564 DNA polymerase III su 92.4 0.91 2E-05 39.0 8.6 78 18-103 107-184 (313)
146 PRK07399 DNA polymerase III su 92.0 0.72 1.6E-05 40.0 7.5 81 19-107 139-219 (314)
147 PRK06871 DNA polymerase III su 91.9 0.97 2.1E-05 39.5 8.2 59 17-80 120-178 (325)
148 PRK07471 DNA polymerase III su 91.7 1.2 2.7E-05 39.4 8.8 80 17-104 154-233 (365)
149 TIGR02442 Cob-chelat-sub cobal 90.0 3.1 6.8E-05 39.5 10.3 63 17-81 139-214 (633)
150 CHL00095 clpC Clp protease ATP 89.3 0.53 1.1E-05 46.0 4.7 68 34-104 305-382 (821)
151 COG0466 Lon ATP-dependent Lon 89.3 1.5 3.3E-05 42.2 7.4 44 35-81 465-508 (782)
152 PRK08058 DNA polymerase III su 89.2 0.91 2E-05 39.5 5.7 58 17-79 123-180 (329)
153 PRK06581 DNA polymerase III su 88.9 1.2 2.7E-05 37.6 5.9 73 18-97 103-175 (263)
154 PRK08485 DNA polymerase III su 88.8 0.93 2E-05 37.1 5.0 59 17-79 67-137 (206)
155 PRK07276 DNA polymerase III su 88.7 4 8.6E-05 35.1 9.1 55 18-78 118-172 (290)
156 TIGR01650 PD_CobS cobaltochela 87.3 2.6 5.7E-05 36.9 7.2 79 35-115 177-281 (327)
157 TIGR03345 VI_ClpV1 type VI sec 87.2 4.6 0.0001 39.8 9.6 103 18-123 682-835 (852)
158 PRK10865 protein disaggregatio 86.7 4.8 0.0001 39.7 9.5 104 18-123 684-833 (857)
159 PF05496 RuvB_N: Holliday junc 86.4 1.7 3.7E-05 36.2 5.3 93 17-112 114-223 (233)
160 COG1474 CDC6 Cdc6-related prot 86.3 5.2 0.00011 35.5 8.7 107 34-162 154-270 (366)
161 PRK11331 5-methylcytosine-spec 85.5 1.8 3.9E-05 39.6 5.4 30 35-67 324-357 (459)
162 cd00009 AAA The AAA+ (ATPases 84.8 2.1 4.6E-05 30.7 4.8 45 20-66 100-150 (151)
163 COG1224 TIP49 DNA helicase TIP 84.4 5.4 0.00012 35.7 7.7 98 38-157 322-432 (450)
164 KOG2004 Mitochondrial ATP-depe 84.3 1.7 3.6E-05 42.0 4.8 45 35-82 553-597 (906)
165 CHL00095 clpC Clp protease ATP 84.0 11 0.00024 37.0 10.5 105 17-123 624-786 (821)
166 PF13177 DNA_pol3_delta2: DNA 83.3 2.3 5.1E-05 33.0 4.7 39 17-59 115-153 (162)
167 COG2607 Predicted ATPase (AAA+ 82.6 6.5 0.00014 33.4 7.1 67 21-87 157-245 (287)
168 COG1067 LonB Predicted ATP-dep 81.8 4.7 0.0001 38.6 6.8 104 36-160 276-402 (647)
169 KOG0989 Replication factor C, 79.9 3.7 8E-05 35.9 4.9 84 19-111 144-228 (346)
170 PRK14700 recombination factor 79.6 4.9 0.00011 34.8 5.6 72 34-112 6-86 (300)
171 COG2255 RuvB Holliday junction 79.1 20 0.00044 31.2 9.1 77 35-114 150-227 (332)
172 PRK07132 DNA polymerase III su 78.5 6.4 0.00014 34.0 6.1 58 17-79 103-160 (299)
173 PRK05818 DNA polymerase III su 77.5 6.3 0.00014 33.5 5.6 46 18-68 102-147 (261)
174 PRK08699 DNA polymerase III su 77.5 3.4 7.3E-05 36.0 4.1 58 17-79 126-183 (325)
175 COG0542 clpA ATP-binding subun 77.2 18 0.00039 35.4 9.2 105 17-123 606-759 (786)
176 PHA02244 ATPase-like protein 76.9 15 0.00032 33.0 8.0 34 34-70 219-263 (383)
177 PF07728 AAA_5: AAA domain (dy 76.4 2 4.2E-05 31.9 2.1 22 36-59 114-139 (139)
178 PRK13406 bchD magnesium chelat 75.7 24 0.00052 33.4 9.5 54 17-72 106-173 (584)
179 PF05621 TniB: Bacterial TniB 75.6 7.5 0.00016 33.7 5.6 98 23-123 167-274 (302)
180 PRK09862 putative ATP-dependen 75.0 36 0.00079 31.7 10.3 53 17-71 307-391 (506)
181 PRK13531 regulatory ATPase Rav 74.6 42 0.0009 31.2 10.5 62 17-80 120-193 (498)
182 KOG2035 Replication factor C, 73.8 9.1 0.0002 33.2 5.6 63 36-101 157-220 (351)
183 COG1239 ChlI Mg-chelatase subu 73.6 11 0.00023 34.2 6.3 66 16-83 156-234 (423)
184 KOG2680 DNA helicase TIP49, TB 73.3 29 0.00063 30.6 8.6 91 46-158 339-430 (454)
185 COG3267 ExeA Type II secretory 71.4 18 0.0004 30.7 6.8 64 58-122 190-257 (269)
186 PF01637 Arch_ATPase: Archaeal 68.7 7.1 0.00015 30.8 3.8 84 18-104 138-229 (234)
187 PRK13765 ATP-dependent proteas 68.2 12 0.00025 35.9 5.6 85 36-122 277-384 (637)
188 COG0470 HolB ATPase involved i 68.1 13 0.00029 31.2 5.6 56 18-78 123-178 (325)
189 TIGR01128 holA DNA polymerase 60.9 88 0.0019 26.0 9.2 78 20-100 63-144 (302)
190 smart00763 AAA_PrkA PrkA AAA d 59.9 13 0.00028 33.1 4.0 65 17-84 249-330 (361)
191 PRK07452 DNA polymerase III su 58.8 37 0.00081 29.0 6.7 89 18-114 78-173 (326)
192 COG2256 MGS1 ATPase related to 58.3 24 0.00053 32.0 5.4 45 34-81 130-176 (436)
193 KOG2383 Predicted ATPase [Gene 57.6 17 0.00036 33.1 4.3 72 34-116 222-298 (467)
194 PRK05917 DNA polymerase III su 57.1 13 0.00028 32.0 3.4 45 18-67 109-153 (290)
195 TIGR00368 Mg chelatase-related 54.7 1.2E+02 0.0027 28.1 9.6 52 18-71 309-394 (499)
196 PRK05574 holA DNA polymerase I 53.9 91 0.002 26.5 8.3 51 60-114 138-189 (340)
197 KOG1969 DNA replication checkp 52.4 47 0.001 32.6 6.6 79 38-121 440-518 (877)
198 PRK05342 clpX ATP-dependent pr 50.8 46 0.001 30.0 6.1 72 49-122 295-382 (412)
199 KOG2227 Pre-initiation complex 48.5 1.7E+02 0.0037 27.3 9.2 125 34-162 287-420 (529)
200 PF12703 plasmid_Toxin: Toxin 45.0 72 0.0016 21.5 4.7 17 143-159 55-71 (74)
201 PF02969 TAF: TATA box binding 44.3 36 0.00079 22.6 3.3 13 143-155 54-66 (66)
202 PF00399 PIR: Yeast PIR protei 43.7 11 0.00023 18.6 0.5 9 183-191 3-11 (18)
203 PRK05201 hslU ATP-dependent pr 42.4 80 0.0017 29.0 6.2 56 20-77 277-344 (443)
204 TIGR00382 clpX endopeptidase C 40.4 82 0.0018 28.5 6.0 72 49-122 301-388 (413)
205 PF11035 SnAPC_2_like: Small n 39.7 1.5E+02 0.0032 26.0 7.1 57 69-126 25-81 (344)
206 TIGR00390 hslU ATP-dependent p 38.9 1E+02 0.0022 28.3 6.3 56 20-77 275-342 (441)
207 PRK06585 holA DNA polymerase I 38.2 1.7E+02 0.0037 25.1 7.6 40 61-100 135-175 (343)
208 PF05729 NACHT: NACHT domain 37.9 82 0.0018 23.1 5.0 23 61-83 143-165 (166)
209 smart00382 AAA ATPases associa 37.8 42 0.0009 23.3 3.2 33 34-68 114-147 (148)
210 COG1221 PspF Transcriptional r 36.8 70 0.0015 28.9 5.0 97 22-120 191-311 (403)
211 KOG3423 Transcription initiati 36.7 2.2E+02 0.0047 22.7 7.7 86 72-158 72-166 (176)
212 PF06068 TIP49: TIP49 C-termin 36.7 45 0.00097 30.0 3.6 48 37-87 308-367 (398)
213 KOG2028 ATPase related to the 36.6 2.2E+02 0.0048 26.0 7.9 105 34-157 248-368 (554)
214 PRK11608 pspF phage shock prot 36.6 89 0.0019 27.0 5.5 81 36-118 141-240 (326)
215 KOG1514 Origin recognition com 36.1 1.6E+02 0.0035 28.7 7.4 116 33-160 538-658 (767)
216 PRK11361 acetoacetate metaboli 35.8 85 0.0018 28.0 5.5 97 19-118 252-376 (457)
217 PF00493 MCM: MCM2/3/5 family 35.7 67 0.0015 27.9 4.6 63 20-84 137-224 (331)
218 KOG1942 DNA helicase, TBP-inte 34.7 2.1E+02 0.0047 25.3 7.3 77 38-117 327-417 (456)
219 TIGR02915 PEP_resp_reg putativ 34.5 86 0.0019 27.9 5.3 97 19-118 248-372 (445)
220 TIGR01818 ntrC nitrogen regula 34.1 79 0.0017 28.3 5.0 79 36-118 269-367 (463)
221 PF11796 DUF3323: Protein of u 33.2 1.1E+02 0.0023 24.9 5.2 56 57-112 1-60 (215)
222 KOG1968 Replication factor C, 32.6 86 0.0019 31.3 5.2 88 20-117 447-535 (871)
223 PRK08487 DNA polymerase III su 32.5 2.8E+02 0.006 23.8 7.9 51 60-114 127-178 (328)
224 PF13265 DUF4056: Protein of u 32.3 85 0.0018 26.7 4.4 82 65-165 126-220 (270)
225 PLN03210 Resistant to P. syrin 32.1 2.2E+02 0.0048 29.2 8.2 63 37-105 325-391 (1153)
226 PRK05629 hypothetical protein; 31.7 2.6E+02 0.0057 23.8 7.6 75 20-99 80-158 (318)
227 PF07693 KAP_NTPase: KAP famil 31.2 2.2E+02 0.0048 23.9 7.0 59 22-83 190-265 (325)
228 PRK07914 hypothetical protein; 30.2 2.8E+02 0.0062 23.6 7.6 84 20-113 80-170 (320)
229 PRK11388 DNA-binding transcrip 29.3 1.2E+02 0.0026 28.7 5.5 80 36-118 457-554 (638)
230 TIGR02974 phageshock_pspF psp 28.9 80 0.0017 27.4 4.0 97 19-118 108-233 (329)
231 PF00808 CBFD_NFYB_HMF: Histon 27.2 65 0.0014 20.7 2.4 12 143-154 54-65 (65)
232 PRK10365 transcriptional regul 26.8 1.3E+02 0.0029 26.5 5.2 79 36-117 274-371 (441)
233 cd07981 TAF12 TATA Binding Pro 26.6 1.8E+02 0.0039 19.3 4.6 63 71-157 5-67 (72)
234 PF08784 RPA_C: Replication pr 26.2 1.6E+02 0.0036 20.5 4.6 41 73-114 49-89 (102)
235 PLN02641 anthranilate phosphor 25.6 2.2E+02 0.0048 25.0 6.2 19 168-186 75-93 (343)
236 cd07979 TAF9 TATA Binding Prot 25.3 2.8E+02 0.006 20.4 6.0 41 143-192 52-100 (117)
237 cd01080 NAD_bind_m-THF_DH_Cycl 25.1 1.2E+02 0.0027 23.7 4.1 51 38-98 90-140 (168)
238 PRK05907 hypothetical protein; 24.3 3.8E+02 0.0083 23.1 7.3 78 21-100 86-167 (311)
239 smart00803 TAF TATA box bindin 23.4 91 0.002 20.5 2.6 13 143-155 53-65 (65)
240 KOG0741 AAA+-type ATPase [Post 23.1 1.9E+02 0.0041 27.7 5.3 60 17-78 621-683 (744)
241 PF07726 AAA_3: ATPase family 23.0 90 0.002 23.7 2.8 41 17-59 75-129 (131)
242 PF06144 DNA_pol3_delta: DNA p 22.9 49 0.0011 25.0 1.4 88 18-113 75-166 (172)
243 PRK10820 DNA-binding transcrip 22.5 2E+02 0.0044 26.6 5.6 80 36-118 339-437 (520)
244 KOG2228 Origin recognition com 22.5 64 0.0014 28.9 2.1 47 33-81 168-219 (408)
245 COG1945 Pyruvoyl-dependent arg 21.8 31 0.00067 27.2 0.1 31 146-193 21-51 (163)
246 PF02269 TFIID-18kDa: Transcri 21.3 52 0.0011 23.2 1.1 59 95-173 24-82 (93)
247 PF12846 AAA_10: AAA-like doma 21.2 54 0.0012 26.9 1.4 40 33-74 250-294 (304)
248 PF13335 Mg_chelatase_2: Magne 21.2 2E+02 0.0044 20.2 4.2 39 98-155 56-94 (96)
249 KOG0480 DNA replication licens 21.0 6.7E+02 0.014 24.6 8.5 45 37-83 486-544 (764)
250 PRK10923 glnG nitrogen regulat 20.7 2.9E+02 0.0063 24.7 6.1 98 19-118 247-371 (469)
251 PF00931 NB-ARC: NB-ARC domain 20.4 2.7E+02 0.0058 22.8 5.5 63 36-102 129-195 (287)
252 PRK07066 3-hydroxybutyryl-CoA 20.2 3E+02 0.0064 24.0 5.8 47 19-68 96-146 (321)
253 PF07424 TrbM: TrbM; InterPro 20.2 1.8E+02 0.004 23.0 4.0 75 37-113 13-88 (165)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-33 Score=252.48 Aligned_cols=145 Identities=54% Similarity=0.847 Sum_probs=138.4
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+|+++.|++..++.++|++++||++|||+....+|+||||||||+.||+|++||||||+.|+||+||.+.|.+||+.+++
T Consensus 537 Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 537 DALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred HhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHh
Confidence 57899999888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
++++.+++|+..||+.|+|||||||..+|++|++.|+++.+.. ..|+.+||++|++.++||..
T Consensus 617 kmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a-----------------~~i~~~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 617 KMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA-----------------TEITWQHFEEALKAVRPSLT 679 (693)
T ss_pred cCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc-----------------ccccHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999753 56899999999999999987
Q ss_pred cc
Q 039253 163 RG 164 (199)
Q Consensus 163 r~ 164 (199)
..
T Consensus 680 ~~ 681 (693)
T KOG0730|consen 680 SE 681 (693)
T ss_pred HH
Confidence 53
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.6e-32 Score=231.32 Aligned_cols=140 Identities=42% Similarity=0.628 Sum_probs=129.4
Q ss_pred cceeeccCCCCCc---hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGG---AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~~~---~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+||+.+|....++ ...|+.-+||++||||.+..+|-||+|||+++.||||++||||||++|+||+||.+.|.+||+.
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 5789999765333 3568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|.+++.+..++||+.||+.|+|+|||||+++|.+|.+.|+|+.. ..+|++||.+|..++..
T Consensus 334 HtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R-------------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 334 HTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR-------------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-------------------CeecHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999885 67999999999998865
Q ss_pred cc
Q 039253 160 SQ 161 (199)
Q Consensus 160 s~ 161 (199)
..
T Consensus 395 ~~ 396 (406)
T COG1222 395 KK 396 (406)
T ss_pred cc
Confidence 43
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.1e-31 Score=239.35 Aligned_cols=158 Identities=39% Similarity=0.650 Sum_probs=138.9
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+||+++|+...++.+.|++||||++|||+..+.+|+||+|||||+.||||++||||||+.+++++|+.++|.+||+.+.+
T Consensus 614 DaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 614 DALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred hhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCCCCCcccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 83 --KSPVSKDVDLEKLAQFTQ--GFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 83 --~~~~~~~~~l~~la~~t~--G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
+.++.++++++.||..+. |||||||..||++|.+.|+++.+..... .. ...........+|..||.+|+++++
T Consensus 694 n~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~-~~--~~~~~~~~~~~~t~~hF~eA~~~i~ 770 (802)
T KOG0733|consen 694 NTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDS-SE--DDVTVRSSTIIVTYKHFEEAFQRIR 770 (802)
T ss_pred cCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccc-cC--cccceeeeeeeecHHHHHHHHHhcC
Confidence 778889999999999887 9999999999999999999998752211 11 1111111134589999999999999
Q ss_pred ccccc
Q 039253 159 KSQSR 163 (199)
Q Consensus 159 Ps~~r 163 (199)
||++.
T Consensus 771 pSv~~ 775 (802)
T KOG0733|consen 771 PSVSE 775 (802)
T ss_pred CCccH
Confidence 99985
No 4
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=230.99 Aligned_cols=170 Identities=35% Similarity=0.495 Sum_probs=140.9
Q ss_pred cceeeccCCC-CCchhhHHHHHHHHHHhCCCCC-CC---EEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHH
Q 039253 3 WSIVIQRGSG-AGGAADRIPNQLLTEMDGLSAK-KT---IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIF 77 (199)
Q Consensus 3 ~sl~~~R~~~-~~~~~~r~~~~lL~~ld~~~~~-~~---VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il 77 (199)
+|||++|++. +|+.++|+.++||.+|||+... .+ |+|+++||.||+||+||+| ||+++|+||+|+.+.|..+|
T Consensus 314 Dslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li 391 (491)
T KOG0738|consen 314 DSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALI 391 (491)
T ss_pred HHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHH
Confidence 4799999866 8889999999999999999653 33 9999999999999999999 99999999999999999999
Q ss_pred HHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 78 KACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 78 ~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
+..++..++.+++++..||+.++||||+||.++|++|.++++||.+.......- ... .......+++++||+.|++++
T Consensus 392 ~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~~~ei-~~l-akE~~~~pv~~~Dfe~Al~~v 469 (491)
T KOG0738|consen 392 KILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLTPREI-RQL-AKEEPKMPVTNEDFEEALRKV 469 (491)
T ss_pred HHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCCcHHh-hhh-hhhccccccchhhHHHHHHHc
Confidence 999999999999999999999999999999999999999999998753211100 000 001112679999999999999
Q ss_pred cccccc-cCCcccccchhhh
Q 039253 158 CKSQSR-GFGDEFGFCETAV 176 (199)
Q Consensus 158 ~Ps~~r-~~~~~~~~~~~~~ 176 (199)
+||++. .+...=||+++-+
T Consensus 470 ~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 470 RPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred CcCCCHHHHHHHHHHHHHhc
Confidence 999994 4444445555443
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-29 Score=228.28 Aligned_cols=168 Identities=35% Similarity=0.499 Sum_probs=141.9
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCC----CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAK----KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~----~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
+||+++|...+-+.++|+++|||+.||++... .+|+||+|||||+.||||++|+||||+.|.++.|++.+|++||+
T Consensus 292 DAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~ 371 (802)
T KOG0733|consen 292 DAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILR 371 (802)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHH
Confidence 58999999988888999999999999999644 67999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH--hhcC--CC--------Cc----------
Q 039253 79 ACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIR--RRKG--KQ--------PE---------- 136 (199)
Q Consensus 79 ~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~--~~~~--~~--------~~---------- 136 (199)
..++++.+..++++..||+.|+||+||||.+||.+|+..|++|.+..... .... +. ..
T Consensus 372 ~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~ 451 (802)
T KOG0733|consen 372 IICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAE 451 (802)
T ss_pred HHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCccc
Confidence 99999999999999999999999999999999999999999998753221 0000 00 00
Q ss_pred ---------------------chhhccccccHHHHHHHHHhccccccc-cCCcccc
Q 039253 137 ---------------------AIEDEVAEIKAEHFEESMKYACKSQSR-GFGDEFG 170 (199)
Q Consensus 137 ---------------------~~~~~~~~it~~df~~Al~~~~Ps~~r-~~~~~~~ 170 (199)
....+...|+.+||+.|+..++||+.| ||.+.=+
T Consensus 452 ~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~tVPd 507 (802)
T KOG0733|consen 452 RPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFATVPD 507 (802)
T ss_pred ccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccceecCC
Confidence 001122458999999999999999998 5665433
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.2e-28 Score=221.86 Aligned_cols=159 Identities=38% Similarity=0.602 Sum_probs=137.7
Q ss_pred cceeeccCCC--CCchhhHHHHHHHHHHhCCC--CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCC-CHHHHHHHH
Q 039253 3 WSIVIQRGSG--AGGAADRIPNQLLTEMDGLS--AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLP-VEKSRLQIF 77 (199)
Q Consensus 3 ~sl~~~R~~~--~~~~~~r~~~~lL~~ld~~~--~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P-~~~~R~~il 77 (199)
+||+|+|+.. +++.++|+++|||.+|||+. ....|+||+|||||+.||||++||||||+.++++++ +.+.+..+|
T Consensus 774 DSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 774 DSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVL 853 (953)
T ss_pred cccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHH
Confidence 5899999854 77789999999999999997 456799999999999999999999999999999998 779999999
Q ss_pred HHhhcCCCCCCcccHHHHHhhCC-CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHh
Q 039253 78 KACLRKSPVSKDVDLEKLAQFTQ-GFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKY 156 (199)
Q Consensus 78 ~~~l~~~~~~~~~~l~~la~~t~-G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 156 (199)
+...+++.++.++++..||++++ .|||||+.++|..|++.|++|.+........ ...........|+++||.+|+++
T Consensus 854 ~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~--~~~e~~~~~v~V~~eDflks~~~ 931 (953)
T KOG0736|consen 854 EALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTI--SEEEQESSSVRVTMEDFLKSAKR 931 (953)
T ss_pred HHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccc--cccccCCceEEEEHHHHHHHHHh
Confidence 99999999999999999999986 7999999999999999999998765432211 01112223366899999999999
Q ss_pred ccccccc
Q 039253 157 ACKSQSR 163 (199)
Q Consensus 157 ~~Ps~~r 163 (199)
++||.++
T Consensus 932 l~PSvS~ 938 (953)
T KOG0736|consen 932 LQPSVSE 938 (953)
T ss_pred cCCcccH
Confidence 9999986
No 7
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-27 Score=212.99 Aligned_cols=137 Identities=36% Similarity=0.529 Sum_probs=127.9
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+|++++|........++.+||||.+|||+..+.+||||+|||+|+.||+|+.||||||++|.+|.||...|.+||+.|++
T Consensus 406 DavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 406 DAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred hhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 57889998776568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
+.++..++|+.-||+-|.||+||||+++++.|++.|..... ..|+++||+-|-.++-
T Consensus 486 ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga-------------------~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 486 KIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA-------------------EMVTMKHLEFAKDRIL 542 (752)
T ss_pred cCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc-------------------ccccHHHHhhhhhhee
Confidence 99999999999999999999999999999999999887764 5689999998887764
No 8
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=6.3e-26 Score=214.89 Aligned_cols=160 Identities=44% Similarity=0.686 Sum_probs=135.2
Q ss_pred ceeeccCCC-CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 4 SIVIQRGSG-AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 4 sl~~~R~~~-~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+|+++|+.. .+...++++++||++||++....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.+++
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred hhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc
Confidence 577888755 4456789999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
+.++..++++..||+.|+||||+||+++|++|++.|+++.......... ............|+++||..|+++++||.+
T Consensus 637 ~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 637 SMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKL-EVGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred CCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhh-hcccccccccCcccHHHHHHHHHHcCCCCC
Confidence 9999889999999999999999999999999999999987643211000 000001112357999999999999999998
Q ss_pred cc
Q 039253 163 RG 164 (199)
Q Consensus 163 r~ 164 (199)
..
T Consensus 716 ~~ 717 (733)
T TIGR01243 716 KE 717 (733)
T ss_pred HH
Confidence 74
No 9
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-25 Score=193.23 Aligned_cols=157 Identities=32% Similarity=0.490 Sum_probs=134.2
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCC--EEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKT--IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~--VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+|+++.|.+++|+....+.++|...+||+.++.+ |+|+||||||.+||.|++| |+.+++++++|+..+|+.||+.+
T Consensus 196 ds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkvi 273 (386)
T KOG0737|consen 196 DSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVI 273 (386)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHH
Confidence 3567888777999999999999999999987765 9999999999999999999 99999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHh---HHhhcCC----CC--cchhhccccccHHHHH
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIEND---IRRRKGK----QP--EAIEDEVAEIKAEHFE 151 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~---~~~~~~~----~~--~~~~~~~~~it~~df~ 151 (199)
+++..+.+++|+..+|.+|+||||+||+++|..|++.++++.+... ....... .. .......++++++||.
T Consensus 274 Lk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~ 353 (386)
T KOG0737|consen 274 LKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFP 353 (386)
T ss_pred hcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHH
Confidence 9999999999999999999999999999999999999999998764 0000000 00 0111225889999999
Q ss_pred HHHHhccccc
Q 039253 152 ESMKYACKSQ 161 (199)
Q Consensus 152 ~Al~~~~Ps~ 161 (199)
.|+.++-+++
T Consensus 354 ~a~~~v~~~~ 363 (386)
T KOG0737|consen 354 KAINRVSASV 363 (386)
T ss_pred HHHHhhhhHH
Confidence 9999777764
No 10
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-25 Score=202.75 Aligned_cols=124 Identities=46% Similarity=0.722 Sum_probs=119.6
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+|++|+|+.++.+.++|++||||++|||.++-.+|.|++||.||+.||||++||||+|+.++.++|++.+|.+|++.+..
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIEND 126 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~ 126 (199)
....+.++|++.+|.+|+|||||||..++..|.+.|+++.+...
T Consensus 850 s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~ 893 (952)
T KOG0735|consen 850 SLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRE 893 (952)
T ss_pred ccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 89888999999999999999999999999999999999987543
No 11
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-26 Score=193.17 Aligned_cols=159 Identities=26% Similarity=0.429 Sum_probs=137.7
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCC-CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAK-KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~-~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+|+|++|+.++++.++|+..+||.+|.|+..+ ++|+|+++||-||.||.|++| ||+++|++|+|+...|..||+.++
T Consensus 235 Dslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhl 312 (439)
T KOG0739|consen 235 DSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHL 312 (439)
T ss_pred hhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheecc
Confidence 47999999999999999999999999999654 679999999999999999999 999999999999999999999999
Q ss_pred cCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCC-----c---c---------------
Q 039253 82 RKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQP-----E---A--------------- 137 (199)
Q Consensus 82 ~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~-----~---~--------------- 137 (199)
...+.. .+.|+..|+++|+||||+||.-+|+.|.++.+|+.+.+.+..++.... . .
T Consensus 313 G~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~ 392 (439)
T KOG0739|consen 313 GDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWM 392 (439)
T ss_pred CCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhc
Confidence 887654 678999999999999999999999999999999987766544321100 0 0
Q ss_pred ----hhhccccccHHHHHHHHHhccccccc
Q 039253 138 ----IEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 138 ----~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
...-.+++|+.||..+|...+|++..
T Consensus 393 dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~ 422 (439)
T KOG0739|consen 393 DVPADKLLEPPVTMRDFLKSLSRTKPTVNE 422 (439)
T ss_pred cCCHhhccCCCccHHHHHHHHhhcCCCCCH
Confidence 11123679999999999999999976
No 12
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.4e-25 Score=199.53 Aligned_cols=142 Identities=45% Similarity=0.737 Sum_probs=131.6
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+++++.|+.+.++..+|++++||.+|++++...+|+||+|||+|+.+|+|++||||||+.|+|++|+.++|.+||+.++.
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 46888998887777799999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 83 KSP--VSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 83 ~~~--~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
... +..++++..+++.|+||||+||..+|++|++.++++.. ...+|++||..|++.++||
T Consensus 425 ~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------------------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 425 DKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------------------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc------------------cCCccHHHHHHHHHhcCCC
Confidence 543 45789999999999999999999999999999999874 1579999999999999999
Q ss_pred cc
Q 039253 161 QS 162 (199)
Q Consensus 161 ~~ 162 (199)
..
T Consensus 487 ~~ 488 (494)
T COG0464 487 VT 488 (494)
T ss_pred CC
Confidence 76
No 13
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-26 Score=202.91 Aligned_cols=156 Identities=37% Similarity=0.540 Sum_probs=136.9
Q ss_pred cceeeccCCC--CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 3 WSIVIQRGSG--AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 3 ~sl~~~R~~~--~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+|||++|++. .++..+.++||||+.|||++.-++|+||+.|||++.||+|++|||||+.++++.+||++.|.+||+.|
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIH 413 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhh
Confidence 5899999876 56678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC----CCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHh
Q 039253 81 LRKS----PVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKY 156 (199)
Q Consensus 81 l~~~----~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 156 (199)
.+++ .+..++|+.+||.+|..||||+|..+|+.|...|+.|.+..... ........+...|+++||..||..
T Consensus 414 T~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~----~~~~~~~~e~lkV~r~DFl~aL~d 489 (744)
T KOG0741|consen 414 TKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGK----VEVDPVAIENLKVTRGDFLNALED 489 (744)
T ss_pred hhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcc----eecCchhhhheeecHHHHHHHHHh
Confidence 9776 45689999999999999999999999999999999988754311 112223344577999999999999
Q ss_pred cccccc
Q 039253 157 ACKSQS 162 (199)
Q Consensus 157 ~~Ps~~ 162 (199)
++|+-.
T Consensus 490 VkPAFG 495 (744)
T KOG0741|consen 490 VKPAFG 495 (744)
T ss_pred cCcccC
Confidence 999854
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.92 E-value=2.6e-24 Score=190.94 Aligned_cols=138 Identities=38% Similarity=0.558 Sum_probs=123.9
Q ss_pred ceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|.+.. +....+++.+||++||++....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.+
T Consensus 249 ~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~ 328 (398)
T PTZ00454 249 SIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTI 328 (398)
T ss_pred hhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHH
Confidence 4566775432 2345678999999999998888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+.++.+..++++..+|..|+||||+||+++|++|.+.|+++.. ..|+++||..|++.+...
T Consensus 329 ~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~-------------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 329 TSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR-------------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred HhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-------------------CccCHHHHHHHHHHHHhc
Confidence 9999988899999999999999999999999999999998763 569999999999998654
No 15
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.9e-24 Score=201.26 Aligned_cols=159 Identities=40% Similarity=0.605 Sum_probs=136.0
Q ss_pred cceeeccCC----CCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q 039253 3 WSIVIQRGS----GAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 3 ~sl~~~R~~----~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
++++++|++ +.++.....+||||.+|||+.....|||+++||+|+-||+|++||||||++|++++|+..+|.+|++
T Consensus 413 da~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 413 DAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred ccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHH
Confidence 467888842 3445566899999999999999889999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 79 ACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 79 ~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
.|+++..+. .++++..||.+|+||+|+||+++|.+|+..|+++.. ..|+..||+.|++++
T Consensus 493 ~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~-------------------~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 493 VHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL-------------------REIGTKDLEYAIERV 553 (774)
T ss_pred HHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc-------------------CccchhhHHHHHHHH
Confidence 999998885 789999999999999999999999999999999875 679999999999944
Q ss_pred c------ccccc-cCCcccccchhhhhhcC
Q 039253 158 C------KSQSR-GFGDEFGFCETAVAANN 180 (199)
Q Consensus 158 ~------Ps~~r-~~~~~~~~~~~~~~~~~ 180 (199)
. +...+ +-...+-+||.+.|-.+
T Consensus 554 i~G~~~~~~~~~~~~~~~~a~~eagha~~g 583 (774)
T KOG0731|consen 554 IAGMEKKSRVLSLEEKKTVAYHEAGHAVVG 583 (774)
T ss_pred hccccccchhcCHhhhhhhhhhhccchhhh
Confidence 3 22222 34455667777776555
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=179.03 Aligned_cols=138 Identities=38% Similarity=0.552 Sum_probs=126.3
Q ss_pred cceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+||++.|..+. .+...|..-+||+++||++...++-||++||+.+-||||++||||+|++|+||+|+++.|.+||+.
T Consensus 250 dsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 250 DSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred cccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 47888886553 334567888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+.+++.+...+++..+|+...|-|||+++.+|.+|.+.|+++.. ..+|++||+-|..++-.
T Consensus 330 hsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerr-------------------vhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 330 HSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERR-------------------VHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred hhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhh-------------------ccccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999875 67999999999877643
No 17
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.7e-24 Score=198.05 Aligned_cols=156 Identities=39% Similarity=0.587 Sum_probs=135.6
Q ss_pred cceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+|++++|+.+ .+..-++.+||||.+|||+..+.+|+||++||||+-+|+|++||||||+.|.+++||...|++|++.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilkv 331 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKV 331 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHH
Confidence 6788899744 4444567999999999999988999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|+++.++..++++..+|+.|.||||+|+.+++.+|++.|+++.. ..+++.||..|+.++--
T Consensus 332 H~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~-------------------~~i~~~~i~ea~drv~~ 392 (596)
T COG0465 332 HAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK-------------------KEITMRDIEEAIDRVIA 392 (596)
T ss_pred HhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC-------------------eeEeccchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999875 67999999999988741
Q ss_pred c-------ccccCCcccccchhhhh
Q 039253 160 S-------QSRGFGDEFGFCETAVA 177 (199)
Q Consensus 160 s-------~~r~~~~~~~~~~~~~~ 177 (199)
- .+..-....-+||-+.|
T Consensus 393 G~erks~vise~ek~~~AYhEagha 417 (596)
T COG0465 393 GPERKSRVISEAEKKITAYHEAGHA 417 (596)
T ss_pred CcCcCCcccChhhhcchHHHHHHHH
Confidence 1 22234445567777443
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-24 Score=179.89 Aligned_cols=139 Identities=37% Similarity=0.515 Sum_probs=127.0
Q ss_pred cceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+||+.+|..++ .....|..-+||+++||+++..+|-||++||+.+-||||++|+||+|++|+||+|+++.|..|++.
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 46778886652 223567888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|.+++...++++|..||+.|++|.|++.+++|-+|.+.|+++.. ..++++||..+|.+++.
T Consensus 354 HsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-------------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 354 HSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-------------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred hhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc-------------------ccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875 56999999999988864
Q ss_pred c
Q 039253 160 S 160 (199)
Q Consensus 160 s 160 (199)
.
T Consensus 415 k 415 (424)
T KOG0652|consen 415 K 415 (424)
T ss_pred h
Confidence 3
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.91 E-value=1.6e-23 Score=189.85 Aligned_cols=137 Identities=26% Similarity=0.418 Sum_probs=119.6
Q ss_pred eeeccC-CCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 5 IVIQRG-SGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 5 l~~~R~-~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
++..+. .+.++.+.+++++|+++|+. ...+|+||+|||+++.||++++|+||||+.|+|++|+.++|.+||+.++.+
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred hhccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 344433 34666788999999999984 456899999999999999999999999999999999999999999999988
Q ss_pred CCCC--CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 84 SPVS--KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 84 ~~~~--~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
.... .+.++..||+.|+||||+||+++|.+|+..|+.+. .+++.+||..|++.++|++
T Consensus 408 ~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------------------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 408 FRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------------------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred cCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC--------------------CCcCHHHHHHHHHhcCCCc
Confidence 6432 47899999999999999999999999998887643 6799999999999999986
Q ss_pred cc
Q 039253 162 SR 163 (199)
Q Consensus 162 ~r 163 (199)
..
T Consensus 468 ~~ 469 (489)
T CHL00195 468 QT 469 (489)
T ss_pred cc
Confidence 43
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.90 E-value=2.6e-23 Score=184.23 Aligned_cols=142 Identities=40% Similarity=0.658 Sum_probs=126.2
Q ss_pred ceeeccCCCCC---chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSGAG---GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~~~---~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|+.... ....+.+.+|+.+++++....+|+||+|||+++.+|++++||||||+.|+|++|+.++|.+||+.+
T Consensus 235 ~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~ 314 (389)
T PRK03992 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIH 314 (389)
T ss_pred hhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHH
Confidence 45666654422 234577889999999998888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+++..+..++++..||..|+||||+||+++|++|.+.|+++.. ..|+.+||.+|++.++|+
T Consensus 315 ~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~-------------------~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 315 TRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR-------------------TEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred hccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCcCHHHHHHHHHHHhcc
Confidence 9999888889999999999999999999999999999988642 569999999999999998
Q ss_pred cccc
Q 039253 161 QSRG 164 (199)
Q Consensus 161 ~~r~ 164 (199)
....
T Consensus 376 ~~~~ 379 (389)
T PRK03992 376 EEKD 379 (389)
T ss_pred cccc
Confidence 8765
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.9e-24 Score=178.68 Aligned_cols=140 Identities=34% Similarity=0.529 Sum_probs=126.5
Q ss_pred cceeeccCCCCCch---hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGGA---ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~~~~---~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+|++.+|=..+++. ..|..-+||+++|||.++..|-||+|||+.+.||||++||||+|++|+|++||...++.||..
T Consensus 288 dAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 288 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred hhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 46778885554443 446677999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|..++.+..++++..+.-.-+.+|||||+++|.+|.+.|+|+.. ..++++||.+|.+.+--
T Consensus 368 HTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR-------------------m~vt~~DF~ka~e~V~~ 428 (440)
T KOG0726|consen 368 HTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR-------------------MKVTMEDFKKAKEKVLY 428 (440)
T ss_pred eecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH-------------------hhccHHHHHHHHHHHHH
Confidence 99999999999999999988999999999999999999999886 56999999999988765
Q ss_pred cc
Q 039253 160 SQ 161 (199)
Q Consensus 160 s~ 161 (199)
+.
T Consensus 429 ~K 430 (440)
T KOG0726|consen 429 KK 430 (440)
T ss_pred hc
Confidence 54
No 22
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.90 E-value=2.3e-23 Score=194.83 Aligned_cols=140 Identities=37% Similarity=0.607 Sum_probs=125.3
Q ss_pred ceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|+.+ .+....+++|+||.+||++....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.+
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~ 334 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH 334 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHH
Confidence 566777653 33455679999999999999889999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+++.++..++++..+|+.|.||||+||.++|++|+..|+++.. ..++..||..|+..+.+.
T Consensus 335 ~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~-------------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 335 MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK-------------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred hhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CcccHHHHHHHHHHHhcc
Confidence 9999988899999999999999999999999999999887542 569999999999988765
Q ss_pred cc
Q 039253 161 QS 162 (199)
Q Consensus 161 ~~ 162 (199)
..
T Consensus 396 ~~ 397 (644)
T PRK10733 396 AE 397 (644)
T ss_pred cc
Confidence 43
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.2e-23 Score=190.11 Aligned_cols=138 Identities=36% Similarity=0.558 Sum_probs=130.0
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
.+|+++|..... .++|++++|+++||++.+..+|+||++||+|+.||++++| ||||+.++++.|+..+|.+|++.+++
T Consensus 288 d~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k 365 (693)
T KOG0730|consen 288 DALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTK 365 (693)
T ss_pred hhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHH
Confidence 378999988766 8899999999999999988999999999999999999999 99999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
++++.+++++..+|..|+||+|+||..+|.+|.+++.++ ++++|+.|+..++||++
T Consensus 366 ~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~------------------------~~~~~~~A~~~i~psa~ 421 (693)
T KOG0730|consen 366 KMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR------------------------TLEIFQEALMGIRPSAL 421 (693)
T ss_pred hcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh------------------------hHHHHHHHHhcCCchhh
Confidence 999888899999999999999999999999999998886 47899999999999999
Q ss_pred ccCC
Q 039253 163 RGFG 166 (199)
Q Consensus 163 r~~~ 166 (199)
|++.
T Consensus 422 Re~~ 425 (693)
T KOG0730|consen 422 REIL 425 (693)
T ss_pred hhee
Confidence 9763
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.89 E-value=1.7e-22 Score=180.93 Aligned_cols=138 Identities=33% Similarity=0.497 Sum_probs=122.3
Q ss_pred ceeeccCCCCC---chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSGAG---GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~~~---~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++.+|....+ ....+.+.+||.+||++....+|.||+|||+++.||++++||||||++|+|++|+.++|.+||+.+
T Consensus 287 ~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 287 AIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred HHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHH
Confidence 45566654322 234577889999999998888899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+.++.+..++++..++..|+||||+||+++|++|.+.|+++.. ..|+.+||..|+.++...
T Consensus 367 ~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r-------------------~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 367 TSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR-------------------MKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC-------------------CccCHHHHHHHHHHHHhh
Confidence 9999888899999999999999999999999999999998763 569999999999998544
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.88 E-value=1.9e-22 Score=183.61 Aligned_cols=137 Identities=39% Similarity=0.641 Sum_probs=121.4
Q ss_pred ceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|+.+ .+....+++++||.+||++....+|+||+|||+|+.||++++||||||++|++++|+.++|.+||+.+
T Consensus 158 ~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 158 AVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred hhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 456666653 23445689999999999998888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+++.++..++++..+|..|.||||+||.++|++|+..+.++.. ..++.+||..|+..+.+
T Consensus 238 l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~-------------------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 238 AKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK-------------------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred HhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCCCHHHHHHHHHHHhc
Confidence 9988877788999999999999999999999999888766542 56999999999998764
No 26
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-22 Score=166.77 Aligned_cols=137 Identities=39% Similarity=0.548 Sum_probs=124.0
Q ss_pred cceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+||+.+|=.. ......|++-+||++|||+....+|-||++||+.+.||||++||||+|++|+||+|++.+++-+|..
T Consensus 258 daiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~t 337 (408)
T KOG0727|consen 258 DAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFST 337 (408)
T ss_pred hhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHh
Confidence 3566677544 3334668999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
+..++.+.+++|++.+..+.+..||+||.++|++|.+.|+++.. ..+...||++|-+...
T Consensus 338 itskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr-------------------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 338 ITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR-------------------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred hhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc-------------------eeeeHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999875 5688999999987653
No 27
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=7.3e-22 Score=164.22 Aligned_cols=125 Identities=34% Similarity=0.572 Sum_probs=113.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLA 96 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la 96 (199)
...++|.||+.|||+..+.+|+.|++||+|+.||+|+++ ||...|+|.+|+.++|.+|++.+.+++++.-+.++..++
T Consensus 235 VsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~ 312 (368)
T COG1223 235 VSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA 312 (368)
T ss_pred HHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH
Confidence 346899999999999999999999999999999999999 999999999999999999999999999999899999999
Q ss_pred hhCCCCCHHHHH-HHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 97 QFTQGFSGADIT-EICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 97 ~~t~G~sgaDI~-~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
+.|.||||+||+ .+++.|++.|+.+.. ..|+.+|++.|+++-++...
T Consensus 313 ~~t~g~SgRdikekvlK~aLh~Ai~ed~-------------------e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 313 AKTKGMSGRDIKEKVLKTALHRAIAEDR-------------------EKVEREDIEKALKKERKRRA 360 (368)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHhch-------------------hhhhHHHHHHHHHhhccccC
Confidence 999999999996 466777888887765 45889999999998776654
No 28
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.1e-22 Score=165.92 Aligned_cols=140 Identities=32% Similarity=0.480 Sum_probs=125.6
Q ss_pred cceeeccCC---CCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGS---GAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~---~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+|+++.|=. +..+...|..-+|+++|||+.++.++-|+++||+|+.||||++||||+|++++|.+|+.+.|..||+.
T Consensus 280 daiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~ki 359 (435)
T KOG0729|consen 280 DAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKI 359 (435)
T ss_pred ccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEE
Confidence 356777732 24445678888999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|.+.+.+..++-|+.||..+..-+|++|+.+|.+|.+.|++... ...|..||..|+.++..
T Consensus 360 haksmsverdir~ellarlcpnstgaeirsvcteagmfairarr-------------------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 360 HAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR-------------------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred eccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-------------------hhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998774 45799999999998754
Q ss_pred cc
Q 039253 160 SQ 161 (199)
Q Consensus 160 s~ 161 (199)
..
T Consensus 421 gy 422 (435)
T KOG0729|consen 421 GY 422 (435)
T ss_pred HH
Confidence 43
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.86 E-value=1.8e-21 Score=181.32 Aligned_cols=135 Identities=41% Similarity=0.629 Sum_probs=120.3
Q ss_pred ceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|+.+ .+....+++++||.+||++..+.+|+||+|||+++.+|+|++||||||++|+|++|+.++|.+||+.+
T Consensus 286 ~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~ 365 (638)
T CHL00176 286 AVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVH 365 (638)
T ss_pred hhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHH
Confidence 456666543 33445688999999999998888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
+++..+..++++..+|..|.||||+||+++|++|+..+.++.. ..++.+||..|+.++
T Consensus 366 l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------------------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 366 ARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------------------ATITMKEIDTAIDRV 423 (638)
T ss_pred HhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC-------------------CCcCHHHHHHHHHHH
Confidence 9987777889999999999999999999999999988876653 569999999999887
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.6e-22 Score=175.96 Aligned_cols=155 Identities=30% Similarity=0.457 Sum_probs=134.5
Q ss_pred CcceeeccCCCCCchhhHHHHHHHHHHhCCC--CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 2 GWSIVIQRGSGAGGAADRIPNQLLTEMDGLS--AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 2 g~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~--~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+++++.+|+...++.+.|+..+||.++++.. ..++|+||+|||+||.+|.|++| ||.+++++|+|+.+.|..+|+.
T Consensus 254 idslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ 331 (428)
T KOG0740|consen 254 IDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQ 331 (428)
T ss_pred hHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHH
Confidence 3578899988899999999999999999884 45789999999999999999999 9999999999999999999999
Q ss_pred hhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 80 CLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 80 ~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
++.+.+.. .+.++..|++.|+||||+||.++|++|++..++...... ..........++++..||..|++.++
T Consensus 332 ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~------~~~~~~~~~~r~i~~~df~~a~~~i~ 405 (428)
T KOG0740|consen 332 LLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT------DLEFIDADKIRPITYPDFKNAFKNIK 405 (428)
T ss_pred HHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch------hhhhcchhccCCCCcchHHHHHHhhc
Confidence 99887544 678999999999999999999999999999888775320 11122344558899999999999999
Q ss_pred cccccc
Q 039253 159 KSQSRG 164 (199)
Q Consensus 159 Ps~~r~ 164 (199)
|+.+.+
T Consensus 406 ~~~s~~ 411 (428)
T KOG0740|consen 406 PSVSLE 411 (428)
T ss_pred cccCcc
Confidence 999874
No 31
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=1.2e-20 Score=165.80 Aligned_cols=135 Identities=42% Similarity=0.671 Sum_probs=117.9
Q ss_pred ceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++.+|.... .....+.+.+++.+++++....+|+||+|||+++.+|++++|||||++.|+|++|+.++|.+||+.+
T Consensus 226 ~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIH 305 (364)
T ss_pred hhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHH
Confidence 3455554332 2234567889999999987778899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
+.+..+..++++..++..|+||+|+||+++|.+|.+.|+++.. ..|+.+||..|++.+
T Consensus 306 ~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~-------------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 306 TRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER-------------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred HhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CccCHHHHHHHHHHh
Confidence 9988887789999999999999999999999999999988752 569999999999875
No 32
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.2e-21 Score=183.30 Aligned_cols=172 Identities=31% Similarity=0.387 Sum_probs=139.1
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
..|++.|++-.......++++||..|||+.++.+|+||+|||||+.+|||++||||||+.++|++|+.+.|.+|+..+.+
T Consensus 373 dGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr 452 (1080)
T KOG0732|consen 373 DGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTR 452 (1080)
T ss_pred ccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhcc
Confidence 45778888776667778999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
+-... ....+..||+.|.||.|+||+.+|.+|++.++++............. .......+...||..|+.++.|+.
T Consensus 453 kw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~---~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 453 KWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLL---IDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred CCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeeccccccc---ccchhhhhhhHhhhhhhhccCCCC
Confidence 76422 44567889999999999999999999999999886432111110011 111224489999999999999999
Q ss_pred cccCCcccccchhhhh
Q 039253 162 SRGFGDEFGFCETAVA 177 (199)
Q Consensus 162 ~r~~~~~~~~~~~~~~ 177 (199)
.|......+.-.+..-
T Consensus 530 ~R~~~~~s~Pl~~~~~ 545 (1080)
T KOG0732|consen 530 RRSSVIFSRPLSTYLK 545 (1080)
T ss_pred CccccCCCCCCCccee
Confidence 9976666665555443
No 33
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.84 E-value=9.4e-21 Score=188.01 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=106.3
Q ss_pred HHHHHHHHHhCCC---CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh--cCCCCCC-cccHH
Q 039253 20 IPNQLLTEMDGLS---AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL--RKSPVSK-DVDLE 93 (199)
Q Consensus 20 ~~~~lL~~ld~~~---~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l--~~~~~~~-~~~l~ 93 (199)
.+++||++||+.. +..+|+||||||+|+.||||++||||||++|++++|+..+|++++..++ ++.++.. .+++.
T Consensus 1753 tL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~ 1832 (2281)
T CHL00206 1753 SLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTN 1832 (2281)
T ss_pred hHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHH
Confidence 4899999999874 3567999999999999999999999999999999999999999988654 4555553 36899
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 94 KLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 94 ~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
.+|+.|.|||||||+++|.+|++.|+++.. ..|+.++|..|+.+...-
T Consensus 1833 ~LA~~T~GfSGADLanLvNEAaliAirq~k-------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1833 GFGSITMGSNARDLVALTNEALSISITQKK-------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CccCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999863 568999999999877543
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.83 E-value=4.3e-20 Score=167.90 Aligned_cols=139 Identities=37% Similarity=0.560 Sum_probs=111.0
Q ss_pred cceeeccCCC-CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 3 WSIVIQRGSG-AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 3 ~sl~~~R~~~-~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
++++++|+.+ .++...+++++||++||++....+|+||+|||+++.||||++||||||.+|+|++|+.++|++||+.++
T Consensus 299 D~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 299 DSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred hhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3567788765 445567899999999999988889999999999999999999999999999999999999999999998
Q ss_pred cC-CCCC---------CcccHHHHHh-----------------------------hCCCCCHHHHHHHHHHHHHHHHHHH
Q 039253 82 RK-SPVS---------KDVDLEKLAQ-----------------------------FTQGFSGADITEICQRACKDATREE 122 (199)
Q Consensus 82 ~~-~~~~---------~~~~l~~la~-----------------------------~t~G~sgaDI~~lv~~A~~~a~~~~ 122 (199)
.. .++. ...++..+++ .++.+||++|+++|.+|...|+.+.
T Consensus 379 ~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~ 458 (512)
T TIGR03689 379 TDSLPLDADLAEFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDH 458 (512)
T ss_pred hccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHH
Confidence 64 3431 1122222222 2577889999999999999998887
Q ss_pred HHHhHHhhcCCCCcchhhccccccHHHHHHHHHh
Q 039253 123 IENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKY 156 (199)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 156 (199)
+... ...++.+|+..|+..
T Consensus 459 ~~~~---------------~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 459 ITGG---------------QVGLRIEHLLAAVLD 477 (512)
T ss_pred HhcC---------------CcCcCHHHHHHHHHH
Confidence 6321 146899999999875
No 35
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.83 E-value=8.7e-20 Score=173.13 Aligned_cols=162 Identities=37% Similarity=0.554 Sum_probs=134.2
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
+++++|+...++...+++++|++.|+++....+|+||++||+++.||++++|+|||+..+++++|+.++|.+||+.+.+.
T Consensus 282 ~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 282 AIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred hhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 46777776666667899999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 84 SPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 84 ~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
.++..+.++..+++.|+||+|+||..+|+.|++.++++.......................++.+||..|++.++|+.++
T Consensus 362 ~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~ 441 (733)
T TIGR01243 362 MPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIR 441 (733)
T ss_pred CCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccc
Confidence 88888899999999999999999999999999999988754210000000000011123568999999999999999987
Q ss_pred cC
Q 039253 164 GF 165 (199)
Q Consensus 164 ~~ 165 (199)
++
T Consensus 442 ~~ 443 (733)
T TIGR01243 442 EV 443 (733)
T ss_pred hh
Confidence 54
No 36
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.7e-18 Score=145.78 Aligned_cols=137 Identities=36% Similarity=0.539 Sum_probs=117.7
Q ss_pred cceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+|+++.|.+.. .....+.+=+|+++||++....+|-+|+|||+|+.|||+++||||+|+.+++|+|++..|..|++.
T Consensus 235 DAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Ki 314 (388)
T KOG0651|consen 235 DAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKI 314 (388)
T ss_pred hhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEee
Confidence 36677774432 223445666888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
+........+++.+.+.+.++||.|+|+.+.|++|-+.++++.. ..+-++||..++.+..
T Consensus 315 h~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------------------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 315 HVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------------------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred ccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh-------------------HHHhHHHHHHHHHHHH
Confidence 99888777789999999999999999999999999988877664 3467899998887764
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.70 E-value=4.3e-16 Score=136.01 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=99.4
Q ss_pred cceeeccCCCCCchhhHHH-HHHHHHHhCC------------CCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCC
Q 039253 3 WSIVIQRGSGAGGAADRIP-NQLLTEMDGL------------SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPV 69 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~-~~lL~~ld~~------------~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~ 69 (199)
+|++++|++..+....+++ .+||++||+. ....+|+||+|||+|+.|||+|+||||||+.+ .+|+
T Consensus 222 DA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd 299 (413)
T PLN00020 222 DAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPT 299 (413)
T ss_pred hhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCC
Confidence 4688999866666667776 8999999863 23567999999999999999999999999975 5899
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHhhCCC----CCHHHHHHHHHHHHHHHHHHH
Q 039253 70 EKSRLQIFKACLRKSPVSKDVDLEKLAQFTQG----FSGADITEICQRACKDATREE 122 (199)
Q Consensus 70 ~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G----~sgaDI~~lv~~A~~~a~~~~ 122 (199)
.++|.+||+.++++..+. ..++..|+..+.| |+||--..+..++....+.+.
T Consensus 300 ~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 300 REDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh
Confidence 999999999999998776 6889999998877 788888888888877777665
No 38
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.8e-12 Score=115.30 Aligned_cols=144 Identities=36% Similarity=0.497 Sum_probs=126.5
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
.+++++|.........+++++|+..|+++.... |++++.||++..+|++++++|||+..+++..|+...|.+|+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~ 164 (494)
T COG0464 86 DALAPKRSSDQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTR 164 (494)
T ss_pred hhcccCccccccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHh
Confidence 356777777666678899999999999999444 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
.+....+.++..++..+.||+++|+..+|.++...++++... .......++.++|.++++.+.|+
T Consensus 165 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~-------------~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 165 LMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID-------------LVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred cCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc-------------cCcccccccHHHHHHHHHhcCcc
Confidence 888887899999999999999999999999999999888630 01111568999999999999998
No 39
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-12 Score=117.97 Aligned_cols=161 Identities=17% Similarity=0.265 Sum_probs=124.5
Q ss_pred chhhHHHHHHHHHH--hCCC-CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCccc
Q 039253 15 GAADRIPNQLLTEM--DGLS-AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVD 91 (199)
Q Consensus 15 ~~~~r~~~~lL~~l--d~~~-~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~ 91 (199)
+...++...+-.+| |.+. +..+++||++|+..+.|++.+++ -|-++|.++.|++++|.+||+.|+....+..++.
T Consensus 509 ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~ 586 (953)
T KOG0736|consen 509 GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN 586 (953)
T ss_pred chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHH
Confidence 44445544443333 3333 55779999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCCCcchhhccccccHHHHHHHHHhccccccccCCc---
Q 039253 92 LEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRR-KGKQPEAIEDEVAEIKAEHFEESMKYACKSQSRGFGD--- 167 (199)
Q Consensus 92 l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r~~~~--- 167 (199)
.+.+|++|.|||.+|+.+++......+..+..++..... ..+...........++++||.+|+.+++...+..+|.
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 999999999999999999999885555555443331110 1122233555567899999999999999888877666
Q ss_pred -ccccchhhhh
Q 039253 168 -EFGFCETAVA 177 (199)
Q Consensus 168 -~~~~~~~~~~ 177 (199)
...|.+.+|-
T Consensus 667 PnV~WdDVGGL 677 (953)
T KOG0736|consen 667 PNVSWDDVGGL 677 (953)
T ss_pred CccchhcccCH
Confidence 6677777664
No 40
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=6.6e-12 Score=116.37 Aligned_cols=146 Identities=22% Similarity=0.283 Sum_probs=116.3
Q ss_pred hHHHHHHHHH-HhCC-CCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHH
Q 039253 18 DRIPNQLLTE-MDGL-SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEK 94 (199)
Q Consensus 18 ~r~~~~lL~~-ld~~-~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~ 94 (199)
....+.||++ ++.+ ..+..+.||++.+....|+|-+..|++|+.++.++.|+..+|.+||+..+++.... ..-+++-
T Consensus 521 ~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ 600 (952)
T KOG0735|consen 521 SERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDF 600 (952)
T ss_pred HHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3445555544 3333 33455799999999999999999999999999999999999999999999876533 3335555
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccccCC----cccc
Q 039253 95 LAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSRGFG----DEFG 170 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r~~~----~~~~ 170 (199)
++..|+||...|+..++++|.+.|+.+.+.... ..+|.++|.++|+.+.|.++|++. +-+|
T Consensus 601 ls~~TEGy~~~DL~ifVeRai~~a~leris~~~---------------klltke~f~ksL~~F~P~aLR~ik~~k~tgi~ 665 (952)
T KOG0735|consen 601 LSVKTEGYLATDLVIFVERAIHEAFLERISNGP---------------KLLTKELFEKSLKDFVPLALRGIKLVKSTGIR 665 (952)
T ss_pred HHHhcCCccchhHHHHHHHHHHHHHHHHhccCc---------------ccchHHHHHHHHHhcChHHhhhccccccCCCC
Confidence 999999999999999999999999966653321 368999999999999999999753 2377
Q ss_pred cchhhhhh
Q 039253 171 FCETAVAA 178 (199)
Q Consensus 171 ~~~~~~~~ 178 (199)
|-+.++-.
T Consensus 666 w~digg~~ 673 (952)
T KOG0735|consen 666 WEDIGGLF 673 (952)
T ss_pred ceecccHH
Confidence 87776643
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.3e-11 Score=106.23 Aligned_cols=107 Identities=26% Similarity=0.411 Sum_probs=85.1
Q ss_pred cceeeccCCC-CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 3 WSIVIQRGSG-AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 3 ~sl~~~R~~~-~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+|+++.|... .++..+..+|.||-.-- .....++++.+||+|.++|.|+-. |||..|+||+|.+++|..||..|+
T Consensus 453 DAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYl 528 (630)
T KOG0742|consen 453 DAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYL 528 (630)
T ss_pred HHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHH
Confidence 4667777655 77777788999885543 234568999999999999999999 999999999999999999999999
Q ss_pred cCCCCC---C------------------------cccHHHHHhhCCCCCHHHHHHHHHH
Q 039253 82 RKSPVS---K------------------------DVDLEKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 82 ~~~~~~---~------------------------~~~l~~la~~t~G~sgaDI~~lv~~ 113 (199)
.++... . +--+...|+.|+||||++|..|+-.
T Consensus 529 nkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~ 587 (630)
T KOG0742|consen 529 NKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVAS 587 (630)
T ss_pred HHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 654211 0 1125678899999999999999764
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=7.6e-11 Score=104.80 Aligned_cols=93 Identities=27% Similarity=0.312 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhCCCCCC--CEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC-CCCcccHHHH
Q 039253 19 RIPNQLLTEMDGLSAKK--TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP-VSKDVDLEKL 95 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~--~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-~~~~~~l~~l 95 (199)
-.++.||+.+||+.+.. --|||+|||+++.||||++||||+|.+|+++..+.++-..+++.|+.-.. ..---++..+
T Consensus 319 VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l 398 (457)
T KOG0743|consen 319 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERL 398 (457)
T ss_pred eehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 45899999999998765 46899999999999999999999999999999999999999999997532 2111234444
Q ss_pred HhhCCCCCHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQ 112 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~ 112 (199)
.+.++ .|+||+...+-
T Consensus 399 ~~~~~-~tPA~V~e~lm 414 (457)
T KOG0743|consen 399 IEETE-VTPAQVAEELM 414 (457)
T ss_pred hhcCc-cCHHHHHHHHh
Confidence 44444 79999976543
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.5e-10 Score=97.21 Aligned_cols=124 Identities=24% Similarity=0.357 Sum_probs=95.4
Q ss_pred CCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC---
Q 039253 11 SGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS--- 87 (199)
Q Consensus 11 ~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~--- 87 (199)
+.+.+..-|++|.+|+|||.+...++|++++|+|-.+.||.||.. |-|.+.+++.|+.+.|++|++.++..+.-.
T Consensus 272 ~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi 349 (423)
T KOG0744|consen 272 RNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGII 349 (423)
T ss_pred CCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCee
Confidence 335555679999999999999999999999999999999999999 999999999999999999999998643100
Q ss_pred ---------------CcccHHHHHhh-CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHH
Q 039253 88 ---------------KDVDLEKLAQF-TQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFE 151 (199)
Q Consensus 88 ---------------~~~~l~~la~~-t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~ 151 (199)
.+.....+++. +.|+||+-|+.+--.|...-.+. .+++.++|.
T Consensus 350 ~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~~---------------------~~v~~~~fl 408 (423)
T KOG0744|consen 350 LFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFRT---------------------FTVDLSNFL 408 (423)
T ss_pred eeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccCC---------------------CccChHHHH
Confidence 01112333333 48999999988866553221111 578999999
Q ss_pred HHHHhc
Q 039253 152 ESMKYA 157 (199)
Q Consensus 152 ~Al~~~ 157 (199)
.|+...
T Consensus 409 ~al~ea 414 (423)
T KOG0744|consen 409 LALLEA 414 (423)
T ss_pred HHHHHH
Confidence 888654
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=98.46 E-value=3.1e-06 Score=72.49 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCC--CC
Q 039253 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPV--SK 88 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~--~~ 88 (199)
....+...|+..|+.. ..+++||++++.. ..++|++++ ||+.+|+|+.++.+++.+|++.++.+... .+
T Consensus 143 ~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~ 218 (287)
T CHL00181 143 YGSEAIEILLQVMENQ--RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTP 218 (287)
T ss_pred hHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCCh
Confidence 4567889999999853 4567788887632 244699999 99999999999999999999999976533 32
Q ss_pred cccHHHHHh----h--CCCCC-HHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHH
Q 039253 89 DVDLEKLAQ----F--TQGFS-GADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEE 152 (199)
Q Consensus 89 ~~~l~~la~----~--t~G~s-gaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~ 152 (199)
+ ....+.. . .+.|. ++++++++++|...-..|...... .....+....++.+|+.+
T Consensus 219 ~-~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~-------~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 219 E-AEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGG-------RVLTKADLVTIEAEDILK 281 (287)
T ss_pred h-HHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCC-------CCCCHHHHhCCCHHHHhH
Confidence 2 2222222 2 24566 899999999998887777654311 111233446677777754
No 45
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.42 E-value=5e-07 Score=66.88 Aligned_cols=62 Identities=42% Similarity=0.629 Sum_probs=50.5
Q ss_pred eeeccCCCCCchhhHHHHHHHHHHhCCCCC-CCEEEEEeeCCCCCCCccccCCCccceEEEecC
Q 039253 5 IVIQRGSGAGGAADRIPNQLLTEMDGLSAK-KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67 (199)
Q Consensus 5 l~~~R~~~~~~~~~r~~~~lL~~ld~~~~~-~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~ 67 (199)
++++.....+....+++++|+..|+..... .+++||+|||.++.+|++++| +||+++|++++
T Consensus 70 l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 70 LFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp TSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 334443335556778999999999998766 669999999999999999998 89999999974
No 46
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.21 E-value=1.9e-05 Score=67.51 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHhCCCCCCCEEEEEeeCC--CCC---CCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-Cc
Q 039253 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNR--PDI---IDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KD 89 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~--~~~---lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~ 89 (199)
....+.+.|++.|+. ...+++||++++. ++. ++|+|.+ ||+..|+||.++.+++..|++.++.+.... ..
T Consensus 142 ~~~~~~~~Ll~~le~--~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~ 217 (284)
T TIGR02880 142 YGQEAIEILLQVMEN--QRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSA 217 (284)
T ss_pred hHHHHHHHHHHHHhc--CCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCH
Confidence 455678899999984 3456788888764 232 4899999 999999999999999999999999875432 12
Q ss_pred ccHHHHHhh------CCCC-CHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHH
Q 039253 90 VDLEKLAQF------TQGF-SGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEES 153 (199)
Q Consensus 90 ~~l~~la~~------t~G~-sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~A 153 (199)
..+..+... -+.+ .+++++++++.|......|..... ...........++.+|+..+
T Consensus 218 ~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~~-------~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 218 EAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCDL-------DRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcCc-------CCCCCHHHHhCCCHHHHhhc
Confidence 223333332 1333 379999999999777766664321 11112334466777887543
No 47
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.06 E-value=4.9e-05 Score=64.89 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHH
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~ 113 (199)
.++++|++||++..+++++++ ||...+.|+.|+.++..++++......... ++..+..|++.+.|+. +.+..++..
T Consensus 128 ~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~ 204 (305)
T TIGR00635 128 PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRR 204 (305)
T ss_pred CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHH
Confidence 348899999999999999999 999999999999999999999888755443 3445778999998865 666777776
Q ss_pred HHHHH
Q 039253 114 ACKDA 118 (199)
Q Consensus 114 A~~~a 118 (199)
+...+
T Consensus 205 ~~~~a 209 (305)
T TIGR00635 205 VRDFA 209 (305)
T ss_pred HHHHH
Confidence 65444
No 48
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.00 E-value=0.00011 Score=61.75 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-Ccc
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDV 90 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~ 90 (199)
....++.|+..|+.. ..++++|+++... ..++|++++ ||+.+|+|+.++.+++.+|++.++...... ++.
T Consensus 126 ~~~~i~~Ll~~~e~~--~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 126 GKEAIDTLVKGMEDN--RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred HHHHHHHHHHHHhcc--CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 345778899999864 3445666555322 247899999 999999999999999999999999765433 222
Q ss_pred cHHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 91 DLEKLAQF---------TQGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 91 ~l~~la~~---------t~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
-+..|++. ...-.++.+.++++.|......+..
T Consensus 202 a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~~ 243 (261)
T TIGR02881 202 AKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 23334321 1124578888888888766665554
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.94 E-value=5.5e-05 Score=65.64 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHH
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~ 113 (199)
.++.+|++||++..+++++++ ||...+.|+.|+.+++.+|++.......+. ++..+..|++.+.|.. +.+..+++.
T Consensus 149 ~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~ 225 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRR 225 (328)
T ss_pred CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHH
Confidence 347899999999999999999 999999999999999999999998766544 3445788999998854 777777776
Q ss_pred HHHHHHH
Q 039253 114 ACKDATR 120 (199)
Q Consensus 114 A~~~a~~ 120 (199)
+...+..
T Consensus 226 ~~~~a~~ 232 (328)
T PRK00080 226 VRDFAQV 232 (328)
T ss_pred HHHHHHH
Confidence 6555443
No 50
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.91 E-value=3.4e-05 Score=71.39 Aligned_cols=95 Identities=24% Similarity=0.249 Sum_probs=73.8
Q ss_pred EEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 039253 37 IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 37 VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~ 115 (199)
.++++|||.|+.|++++++ |+. .|.|+.++.+++.+|++..+++..+. ++..++.|+..+ ++++++.++++.|+
T Consensus 235 rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa 309 (531)
T TIGR02902 235 RLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAA 309 (531)
T ss_pred EEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHH
Confidence 4556667779999999999 985 67888888999999999999876543 333466666655 48999999999998
Q ss_pred HHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 116 KDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
..|..+.. ..|+.+|+..++.
T Consensus 310 ~~A~~~~~-------------------~~It~~dI~~vl~ 330 (531)
T TIGR02902 310 GIALGEGR-------------------KRILAEDIEWVAE 330 (531)
T ss_pred HHHhhCCC-------------------cEEcHHHHHHHhC
Confidence 77654321 4689999999986
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.71 E-value=0.00013 Score=70.41 Aligned_cols=86 Identities=22% Similarity=0.333 Sum_probs=64.3
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc-----CCCCC------CcccHHHHHh-hCCCC
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR-----KSPVS------KDVDLEKLAQ-FTQGF 102 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~-----~~~~~------~~~~l~~la~-~t~G~ 102 (199)
.++++|+|||.++.||+++++ ||+ .|+|+.|+.+++.+|++.++. ...+. .+..+..|++ .|..+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~ 538 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREA 538 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhc
Confidence 468999999999999999999 995 789999999999999998872 12221 2223555554 44567
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 039253 103 SGADITEICQRACKDATREEI 123 (199)
Q Consensus 103 sgaDI~~lv~~A~~~a~~~~~ 123 (199)
..++|+..+...+..+.++..
T Consensus 539 g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 539 GVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 778888888777766655544
No 52
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.71 E-value=0.00029 Score=62.83 Aligned_cols=94 Identities=17% Similarity=0.236 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCC---CCccccCCCccce--EEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDI---IDPALLRPGRLDQ--LIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~---lD~al~R~gRfd~--~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
.+|+..++.+......+||.+++.|.. +++.+++ ||.. .++|+.|+.++|..|++..+....+. ++..+..|
T Consensus 219 ~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 296 (405)
T TIGR00362 219 EEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 296 (405)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555554433344456655555655 5688888 9974 79999999999999999999766544 45557888
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a 118 (199)
|++..| +.++|..++......+
T Consensus 297 a~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 297 AKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred HHhcCC-CHHHHHHHHHHHHHHH
Confidence 987764 6788888877765444
No 53
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.60 E-value=0.0003 Score=62.06 Aligned_cols=123 Identities=21% Similarity=0.258 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCC---CCCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhcCC--C-CCCccc
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRP---DIIDPALLRPGRLD-QLIYIPLPVEKSRLQIFKACLRKS--P-VSKDVD 91 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~---~~lD~al~R~gRfd-~~i~~~~P~~~~R~~il~~~l~~~--~-~~~~~~ 91 (199)
.++..|+..++... ..++.+|+++|.+ +.+++.+.+ ||. ..|.|++++.++..+|++..+... . .-++..
T Consensus 157 ~~l~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~ 233 (394)
T PRK00411 157 DVLYSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEV 233 (394)
T ss_pred hHHHHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhH
Confidence 35566666666543 2378889998875 457777776 664 678999999999999999887532 1 112334
Q ss_pred HHHHHhhCCCCC--HHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 92 LEKLAQFTQGFS--GADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 92 l~~la~~t~G~s--gaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
+..+++.+.+.+ .+.+..+|..|...|..+.. ..|+.+|+..|+..+.++..+
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~-------------------~~I~~~~v~~a~~~~~~~~~~ 288 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAGLIAEREGS-------------------RKVTEEDVRKAYEKSEIVHLS 288 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC-------------------CCcCHHHHHHHHHHHHHHHHH
Confidence 667777774432 33344666666655544321 457888888888877655443
No 54
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.60 E-value=0.00053 Score=59.81 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=66.6
Q ss_pred CCEEEEEeeCCCC---CCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhcC-C---CCCCcccHHH---HHhhCCCCC
Q 039253 35 KTIFVIGVTNRPD---IIDPALLRPGRLD-QLIYIPLPVEKSRLQIFKACLRK-S---PVSKDVDLEK---LAQFTQGFS 103 (199)
Q Consensus 35 ~~VvvI~aTN~~~---~lD~al~R~gRfd-~~i~~~~P~~~~R~~il~~~l~~-~---~~~~~~~l~~---la~~t~G~s 103 (199)
.++.+|++||.++ .+++.+.+ ||. ..++|++++.++..+|++..+.. . .+. +..+.. ++..+.|.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd- 239 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGD- 239 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCC-
Confidence 5689999999886 58888888 885 78999999999999999998852 1 122 222333 34444453
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 104 GADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 104 gaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
.+.+..+|+.|...|..+.. ..|+.+|+..|+..+..+
T Consensus 240 ~R~al~~l~~a~~~a~~~~~-------------------~~it~~~v~~a~~~~~~~ 277 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGA-------------------ERVTEDHVEKAQEKIEKD 277 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCC-------------------CCCCHHHHHHHHHHHHHH
Confidence 33444567777666654321 346666666666555433
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.57 E-value=0.00043 Score=62.69 Aligned_cols=113 Identities=18% Similarity=0.213 Sum_probs=76.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDI---IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~---lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
.+|+..++.+......+||+++..|.. +++.+++ ||. ..+++..|+.++|..|++..+....+. ++.-+..|
T Consensus 231 ~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 308 (450)
T PRK00149 231 EEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFI 308 (450)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345555555433344456655555655 6789998 997 589999999999999999999765433 34458888
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 96 AQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
|+.+.| +.++|..++......+.... .++|.+.+.++|..+
T Consensus 309 a~~~~~-~~R~l~~~l~~l~~~~~~~~--------------------~~it~~~~~~~l~~~ 349 (450)
T PRK00149 309 AKNITS-NVRELEGALNRLIAYASLTG--------------------KPITLELAKEALKDL 349 (450)
T ss_pred HcCcCC-CHHHHHHHHHHHHHHHHhhC--------------------CCCCHHHHHHHHHHh
Confidence 888765 67777777776644433221 446666666666654
No 56
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.47 E-value=0.00023 Score=68.46 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=60.3
Q ss_pred CCCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCccc-----HHHHHhhC---
Q 039253 33 AKKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVD-----LEKLAQFT--- 99 (199)
Q Consensus 33 ~~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~-----l~~la~~t--- 99 (199)
.+..+.+|++||.++ ..|+||.| ||+ .|+++.|+.+++..||+.+..++....++. +..++..+
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 356799999999865 68999999 996 799999999999999998876553333333 33333333
Q ss_pred --CCCCHHHHHHHHHHHHHH
Q 039253 100 --QGFSGADITEICQRACKD 117 (199)
Q Consensus 100 --~G~sgaDI~~lv~~A~~~ 117 (199)
..+-+.....++++|+..
T Consensus 389 i~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred ccCccChHHHHHHHHHHHHh
Confidence 334556778888888643
No 57
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.34 E-value=0.0014 Score=60.43 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.|+..|+. +...+++|++|+.++.+++++++ |. ..++|..++.++...+++..+.+.... .+..+..|+
T Consensus 142 ~~a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 142 KGAFNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred HHHHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3457788888873 44567888888999999999998 88 578999999999999999999766544 334577889
Q ss_pred hhCCCCCHHHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~ 117 (199)
+.+.| +.+++.++++.+...
T Consensus 217 ~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHcCC-CHHHHHHHHHHHHHh
Confidence 88876 889988888887544
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.30 E-value=0.0015 Score=56.76 Aligned_cols=92 Identities=22% Similarity=0.225 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+.. ...+++|++|+.++.+.+++++ |+ ..++|+.|+.++...+++..+++.... ++..+..|++
T Consensus 132 ~~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~ 206 (355)
T TIGR02397 132 SAFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIAR 206 (355)
T ss_pred HHHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567788888753 3467788888999999999998 87 578999999999999999988766543 3445677787
Q ss_pred hCCCCCHHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRACK 116 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~ 116 (199)
.+.| +++.+.+.++.+..
T Consensus 207 ~~~g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 207 AADG-SLRDALSLLDQLIS 224 (355)
T ss_pred HcCC-ChHHHHHHHHHHHh
Confidence 7765 66666666665543
No 59
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0023 Score=56.43 Aligned_cols=91 Identities=21% Similarity=0.239 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.||..|+. +...+.+|++|+.++.+.+.+++ |+ ..++|++|+.++...+++..+++.... ++..+..++.
T Consensus 134 ~a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~ 208 (363)
T PRK14961 134 HSFNALLKTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY 208 (363)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456778888885 33456777888889999999998 87 678999999999999999988765533 3445777888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRAC 115 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~ 115 (199)
.+.| +++++.++++.+.
T Consensus 209 ~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 209 HAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HcCC-CHHHHHHHHHHHH
Confidence 8876 6777777777654
No 60
>PRK06893 DNA replication initiation factor; Validated
Probab=97.27 E-value=0.0012 Score=54.42 Aligned_cols=91 Identities=8% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCC-CEEEEEeeCCCCCCC---ccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 23 QLLTEMDGLSAKK-TIFVIGVTNRPDIID---PALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 23 ~lL~~ld~~~~~~-~VvvI~aTN~~~~lD---~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
.|...++...... .++|+.++..|..++ +.+.+..++...+.++.|+.++|.+|++.......+. ++.-+..|++
T Consensus 112 ~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~ 191 (229)
T PRK06893 112 AIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLK 191 (229)
T ss_pred HHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444455443333 345555666677776 8899834456799999999999999999888644443 3455778888
Q ss_pred hCCCCCHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRA 114 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A 114 (199)
+.+| +.+.+..++...
T Consensus 192 ~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 192 RLDR-DMHTLFDALDLL 207 (229)
T ss_pred hccC-CHHHHHHHHHHH
Confidence 7764 555555555543
No 61
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.27 E-value=0.00077 Score=64.72 Aligned_cols=69 Identities=25% Similarity=0.256 Sum_probs=52.1
Q ss_pred CCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHHhhCCCCC
Q 039253 34 KKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS----PVS-KDVDLEKLAQFTQGFS 103 (199)
Q Consensus 34 ~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~s 103 (199)
+..+.+|++||.. ..+|+|+.| ||. .|+|+.|+.+++.+||+.+...+ .+. .+..+..++..+..|-
T Consensus 309 ~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 4678999999963 468999999 997 79999999999999999777542 111 3445666777776664
Q ss_pred HH
Q 039253 104 GA 105 (199)
Q Consensus 104 ga 105 (199)
+.
T Consensus 386 ~~ 387 (731)
T TIGR02639 386 ND 387 (731)
T ss_pred cc
Confidence 43
No 62
>PRK09087 hypothetical protein; Validated
Probab=97.08 E-value=0.0031 Score=52.10 Aligned_cols=112 Identities=15% Similarity=0.089 Sum_probs=71.9
Q ss_pred HHHHHHhCCCCCCCEEEEEeeCCCCCC---CccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 23 QLLTEMDGLSAKKTIFVIGVTNRPDII---DPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 23 ~lL~~ld~~~~~~~VvvI~aTN~~~~l---D~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
+|...++.+....+.+||+++..|..+ .+.++. ||. ..+++..|+.+.|.++++..+....+. ++.-+..|+
T Consensus 105 ~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La 182 (226)
T PRK09087 105 GLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLV 182 (226)
T ss_pred HHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 355555544444455666666555433 678998 986 889999999999999999999765443 455577888
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 97 QFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
++..| +.+.+..++......+.... .++|..-+.++++.+
T Consensus 183 ~~~~r-~~~~l~~~l~~L~~~~~~~~--------------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 183 SRMER-SLFAAQTIVDRLDRLALERK--------------------SRITRALAAEVLNEM 222 (226)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHHhh
Confidence 87762 23333333333322222211 568888888888764
No 63
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0051 Score=57.43 Aligned_cols=94 Identities=20% Similarity=0.227 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+. +...+++|++|+.++.|++.+++ |+. .+.|..|+.++-...++..+.+..+. .+..+..+
T Consensus 132 t~~a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~i 206 (559)
T PRK05563 132 STGAFNALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLI 206 (559)
T ss_pred CHHHHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34467889988884 34567778788889999999998 875 68899999999999999888766543 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACK 116 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~ 116 (199)
+..+.| +.++..++++.+..
T Consensus 207 a~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 207 ARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888876 78888777776643
No 64
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.03 E-value=0.0036 Score=56.02 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQF 98 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~ 98 (199)
...|.||+.|+. +..++++|.+|++++.|.|++++ |. ..+.|+.|+.++...+|.... ... ......++..
T Consensus 132 ~aanaLLk~LEe--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~ 202 (394)
T PRK07940 132 RAANALLKAVEE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARA 202 (394)
T ss_pred HHHHHHHHHhhc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHH
Confidence 456889999984 34456666677779999999999 87 699999999998887776322 232 3446778999
Q ss_pred CCCCCHHHHHHHHH
Q 039253 99 TQGFSGADITEICQ 112 (199)
Q Consensus 99 t~G~sgaDI~~lv~ 112 (199)
+.|..+.-+..+..
T Consensus 203 s~G~~~~A~~l~~~ 216 (394)
T PRK07940 203 SQGHIGRARRLATD 216 (394)
T ss_pred cCCCHHHHHHHhcC
Confidence 99988877665543
No 65
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.94 E-value=0.0078 Score=49.18 Aligned_cols=111 Identities=9% Similarity=0.059 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCC---CCCccccCCCcc--ceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPD---IIDPALLRPGRL--DQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~---~lD~al~R~gRf--d~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
..|...++........++|.+++.+. .+.+.+++ || ...+++++|+.+++..+++.+.....+. ++.-+..|
T Consensus 108 ~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L 185 (227)
T PRK08903 108 IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYL 185 (227)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44555555544444444455555422 35577776 77 4799999999999999999887655443 34456777
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
+...+ =+.+++..+++.-...+.... .+||.....+++.
T Consensus 186 ~~~~~-gn~~~l~~~l~~l~~~~~~~~--------------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 186 LTHFR-RDMPSLMALLDALDRYSLEQK--------------------RPVTLPLLREMLA 224 (227)
T ss_pred HHhcc-CCHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHh
Confidence 77544 367777777776433332222 5688888877765
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.92 E-value=0.0046 Score=50.11 Aligned_cols=95 Identities=11% Similarity=0.156 Sum_probs=60.9
Q ss_pred HHHHHHhCCCCCCCEEEEEeeCCCCCCC---ccccCCCcc--ceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 23 QLLTEMDGLSAKKTIFVIGVTNRPDIID---PALLRPGRL--DQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 23 ~lL~~ld~~~~~~~VvvI~aTN~~~~lD---~al~R~gRf--d~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
.|...++........+|+.++..+..++ +.+.+ |+ ...+.++.|+.+++..+++.+..+.... ++.-+..|+
T Consensus 111 ~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~ 188 (226)
T TIGR03420 111 ALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188 (226)
T ss_pred HHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3444444332223334444443454443 67777 76 4789999999999999999887654433 344567788
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKDATR 120 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a~~ 120 (199)
.. -+-+.+++.++++.+-..+..
T Consensus 189 ~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 189 RH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred Hh-ccCCHHHHHHHHHHHHHHHHH
Confidence 85 456889999998886544333
No 67
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0057 Score=55.99 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=63.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
..+.||..|+.. ...+++|++|+.+..+++++++ |+. .++|..|+.++...+++..+...... ++..+..|++.
T Consensus 133 a~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~ 207 (472)
T PRK14962 133 AFNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKR 207 (472)
T ss_pred HHHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 446677777743 3467788888889999999999 884 89999999999999999888654432 34457778886
Q ss_pred CCCCCHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQR 113 (199)
Q Consensus 99 t~G~sgaDI~~lv~~ 113 (199)
+.| ..+++-+.++.
T Consensus 208 s~G-dlR~aln~Le~ 221 (472)
T PRK14962 208 ASG-GLRDALTMLEQ 221 (472)
T ss_pred hCC-CHHHHHHHHHH
Confidence 654 44444444443
No 68
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.87 E-value=0.0075 Score=54.80 Aligned_cols=102 Identities=10% Similarity=0.152 Sum_probs=64.9
Q ss_pred CEEEEEeeCCC---CCCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHH
Q 039253 36 TIFVIGVTNRP---DIIDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITE 109 (199)
Q Consensus 36 ~VvvI~aTN~~---~~lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~ 109 (199)
..+|+.+++.| ..+++.+++ ||. ..+.+..|+.++|..||+..+....+. ++.-+..||....+ ..+.|..
T Consensus 236 k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g 312 (445)
T PRK12422 236 KLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLH 312 (445)
T ss_pred CcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHH
Confidence 34444444445 356789999 996 788899999999999999998766543 34446667776653 4556665
Q ss_pred HHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 110 ICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 110 lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
.+...+.......... .++|.+...++++.+
T Consensus 313 ~l~~l~~~~a~~~~~~-----------------~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 313 ALTLLAKRVAYKKLSH-----------------QLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHHHHHHHHHhhC-----------------CCCCHHHHHHHHHHh
Confidence 5555432222111110 457777777777654
No 69
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.86 E-value=0.0051 Score=55.77 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=62.5
Q ss_pred HHHHHHhCCCCCCCEEEEEeeCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 23 QLLTEMDGLSAKKTIFVIGVTNRPDI---IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 23 ~lL~~ld~~~~~~~VvvI~aTN~~~~---lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
+|...++.+......+||++.+.|.. +++.+++ ||. ..+.+..|+.+.|..|++..+....+. ++.-+..||
T Consensus 215 elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia 292 (440)
T PRK14088 215 ELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVA 292 (440)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45455554434444556655566666 4567888 875 577899999999999999998754333 344578888
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+...| +.++|..++.+....+
T Consensus 293 ~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 293 ENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred hcccc-CHHHHHHHHHHHHHHH
Confidence 87765 6777777777654333
No 70
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.0097 Score=55.26 Aligned_cols=96 Identities=24% Similarity=0.193 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.||..|+.. ...+.+|++|+.+..|.+++++ |. .+++|..++.++-...++..+...... .+..+..|
T Consensus 130 t~~A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~I 204 (535)
T PRK08451 130 TKEAFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEIL 204 (535)
T ss_pred CHHHHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 445678899999854 3456777788889999999999 85 689999999999888888888765443 34567788
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+..+.| +.+++.++++.+...+
T Consensus 205 a~~s~G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 205 ARSGNG-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHcCC-cHHHHHHHHHHHHHhc
Confidence 888776 8888888888776543
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.0078 Score=57.87 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||+.|+. ....+.+|++||.++.|.+.+++ |+ .++.|..++.++-.+.|+..+.+..+. .+..+..|
T Consensus 132 T~~A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lI 206 (830)
T PRK07003 132 TNHAFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLL 206 (830)
T ss_pred CHHHHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33457888888884 34578999999999999999999 88 788999999999999999988765543 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~ 115 (199)
++.+.| +.+|.-+++..+.
T Consensus 207 A~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 207 ARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 888876 4566666665554
No 72
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.74 E-value=0.0078 Score=56.61 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=60.8
Q ss_pred HHHHHHhCCCCCCCEEEEEeeCCC----CCCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 23 QLLTEMDGLSAKKTIFVIGVTNRP----DIIDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 23 ~lL~~ld~~~~~~~VvvI~aTN~~----~~lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
.|...++.+....+-+| .|+|.+ ..+++.|++ ||. ..+++..|+.+.|..||+..+....+. ++.-+..|
T Consensus 398 eLF~l~N~l~e~gk~II-ITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yL 474 (617)
T PRK14086 398 EFFHTFNTLHNANKQIV-LSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFI 474 (617)
T ss_pred HHHHHHHHHHhcCCCEE-EecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34444444333333334 466663 357889999 985 566888899999999999999766554 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+.+..+ +.++|..++.+....+
T Consensus 475 a~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 475 ASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred HHhccC-CHHHHHHHHHHHHHHH
Confidence 887653 5777777777654333
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.73 E-value=0.008 Score=55.06 Aligned_cols=92 Identities=20% Similarity=0.120 Sum_probs=67.2
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+. +...+++|++|+.++.|.+++++ |. .++.|..++.++-.+.++..+....+. .+..+..|
T Consensus 134 s~~A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~I 208 (484)
T PRK14956 134 TDQSFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWI 208 (484)
T ss_pred CHHHHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888888874 44678999999999999999999 88 468888888888888888888765443 34456777
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRA 114 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A 114 (199)
|+.++| +.+|.-++++.+
T Consensus 209 a~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 209 AKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred HHHcCC-hHHHHHHHHHHH
Confidence 776665 355555555443
No 74
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.70 E-value=0.007 Score=50.15 Aligned_cols=74 Identities=16% Similarity=0.083 Sum_probs=53.9
Q ss_pred EEEEeeCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHH
Q 039253 38 FVIGVTNRPDI---IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEIC 111 (199)
Q Consensus 38 vvI~aTN~~~~---lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv 111 (199)
+++.+++.|.. +.|.+++ |+. ..+.+..|+.++|.++++.......+. ++.-+..|+++.+| +.+.+..++
T Consensus 134 li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l 210 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTL 210 (235)
T ss_pred EEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHH
Confidence 55555555666 6899999 987 899999999999999999866544333 34457778887764 666666666
Q ss_pred HHH
Q 039253 112 QRA 114 (199)
Q Consensus 112 ~~A 114 (199)
+..
T Consensus 211 ~~l 213 (235)
T PRK08084 211 DQL 213 (235)
T ss_pred HHH
Confidence 653
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0045 Score=58.63 Aligned_cols=93 Identities=20% Similarity=0.199 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||+.|+. ....+++|++||.++.|.+.+++ |+ .++.|..++.++-.+.|+..+....+. .+..+..|
T Consensus 137 s~~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 137 TNHAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred CHHHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888888884 44678999999999999999999 87 788999999999999998888655443 22336677
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~ 115 (199)
++.+.| +.++..+++..+.
T Consensus 212 A~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 777765 5666666666543
No 76
>PRK08727 hypothetical protein; Validated
Probab=96.63 E-value=0.012 Score=48.65 Aligned_cols=66 Identities=15% Similarity=0.277 Sum_probs=47.0
Q ss_pred EEEeeC-CCCCC---CccccCCCcc--ceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHH
Q 039253 39 VIGVTN-RPDII---DPALLRPGRL--DQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEI 110 (199)
Q Consensus 39 vI~aTN-~~~~l---D~al~R~gRf--d~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~l 110 (199)
||+|+| .|..+ ++++++ || ...+.++.|+.++|..|++.......+. ++..+..|++.+. +|+..+
T Consensus 129 vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~----rd~r~~ 201 (233)
T PRK08727 129 LLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGE----RELAGL 201 (233)
T ss_pred EEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCHHHH
Confidence 444444 57766 789999 97 5678999999999999999876543332 3455778888766 444444
No 77
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.57 E-value=0.016 Score=53.19 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.||..|+.. ...+++|++|+.++.+++++.+ |+. .+.|..|+.++...+++..+....+. .+..+..|+
T Consensus 133 ~~a~naLLk~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 133 KEAFNALLKTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred HHHHHHHHHHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567788888743 3456677778889999999998 775 79999999999999999988766544 234467778
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRAC 115 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~ 115 (199)
..+.| +.+++.++++.+.
T Consensus 208 ~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 208 QASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 77664 5666666666654
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.52 E-value=0.016 Score=54.93 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||+.|+. +...+++|++|+.++.|.+.+++ |. ..+.|..++.++-...|+..+....+. .+..+..|
T Consensus 132 s~~a~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~I 206 (647)
T PRK07994 132 SRHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLL 206 (647)
T ss_pred CHHHHHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888888884 44567888889999999999999 85 889999999999999999888654443 33456677
Q ss_pred HhhCCCCCHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQR 113 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~ 113 (199)
+..+.| +.++.-.++..
T Consensus 207 a~~s~G-s~R~Al~lldq 223 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQ 223 (647)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 777665 44444444443
No 79
>PRK06620 hypothetical protein; Validated
Probab=96.51 E-value=0.016 Score=47.47 Aligned_cols=86 Identities=16% Similarity=0.188 Sum_probs=59.5
Q ss_pred HHHHHhCCCCCCCEEEEEeeCCCCC--CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 24 LLTEMDGLSAKKTIFVIGVTNRPDI--IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 24 lL~~ld~~~~~~~VvvI~aTN~~~~--lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
|...++.+....+.++|+++..|.. + +++++ |+. ..+.+..|+.+.+..+++.......+. ++.-+..|+++
T Consensus 102 lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~ 178 (214)
T PRK06620 102 LLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVN 178 (214)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3334444434456778888777665 5 78888 986 368999999999999999988754433 34457778887
Q ss_pred CCCCCHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQR 113 (199)
Q Consensus 99 t~G~sgaDI~~lv~~ 113 (199)
..| +.+.+..++..
T Consensus 179 ~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 179 LPR-EYSKIIEILEN 192 (214)
T ss_pred ccC-CHHHHHHHHHH
Confidence 753 56666666665
No 80
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.46 E-value=0.043 Score=47.09 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
..+.|+..|+.... ...+|++|+.+..+.+.+.+ |+ ..+++.+|+.++...+++..+.+..+. ++..+..|+..
T Consensus 141 ~~~~L~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 AQQALRRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34556666665432 34566677778888888887 76 578999999999999999988766544 44567778876
Q ss_pred CCCCCHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRA 114 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A 114 (199)
+ ++|+..++...
T Consensus 216 ~----~gdlr~l~~~l 227 (337)
T PRK12402 216 A----GGDLRKAILTL 227 (337)
T ss_pred c----CCCHHHHHHHH
Confidence 6 34555554443
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.43 E-value=0.0047 Score=60.35 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=52.5
Q ss_pred CCCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC----CC-CcccHHHHHhhCCCC
Q 039253 33 AKKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP----VS-KDVDLEKLAQFTQGF 102 (199)
Q Consensus 33 ~~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~----~~-~~~~l~~la~~t~G~ 102 (199)
.+..+.+|+||+.. ..+|+||.| ||. .|.|+.|+.+++..||+.+...+. +. .+..+..++..+.+|
T Consensus 313 ~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 313 ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 35678999999964 359999999 995 799999999999999876665432 21 355677788888776
Q ss_pred C
Q 039253 103 S 103 (199)
Q Consensus 103 s 103 (199)
-
T Consensus 390 i 390 (852)
T TIGR03345 390 I 390 (852)
T ss_pred c
Confidence 3
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.024 Score=53.52 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+. ....+++|++|+.++.+.+.+++ |. ..++|..++.++....++..+.+..+. .+..+..|
T Consensus 137 s~~a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 137 TNTAFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred CHHHHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34457778888774 34567788888899999999988 77 789999999999999999888765544 34457888
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACK 116 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~ 116 (199)
++.+.| +.+++.+++..+..
T Consensus 212 a~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 888876 77887777766543
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.038 Score=51.07 Aligned_cols=92 Identities=17% Similarity=0.255 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.|+..|+. ....+++|++|+.++.+.+.+.+ |+. .++|..|+.++-...++..+.+..+. ++..+..|
T Consensus 129 s~~a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~i 203 (504)
T PRK14963 129 SKSAFNALLKTLEE--PPEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLV 203 (504)
T ss_pred CHHHHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567788888874 33467888889999999999998 875 79999999999999999988766543 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRA 114 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A 114 (199)
++.+.| ..+++.++++.+
T Consensus 204 a~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 204 ARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 887764 455555555554
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.015 Score=53.70 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+.. ...+++|++|+.++.+.+.+++ |. ..++|..++.++-...++..+.+.... .+..+..|
T Consensus 132 s~~a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~i 206 (509)
T PRK14958 132 SGHSFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLL 206 (509)
T ss_pred CHHHHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345678899999853 3457888888999999999988 77 667888888888888888888765443 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACK 116 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~ 116 (199)
++.+.| +.+++.++++.+..
T Consensus 207 a~~s~G-slR~al~lLdq~ia 226 (509)
T PRK14958 207 ARAANG-SVRDALSLLDQSIA 226 (509)
T ss_pred HHHcCC-cHHHHHHHHHHHHh
Confidence 888765 78888888877643
No 85
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.38 E-value=0.018 Score=52.44 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=72.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCC-CCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCC---CCcccH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNR-PDI---IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPV---SKDVDL 92 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~-~~~---lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~---~~~~~l 92 (199)
..|...++.+....+- +|.|+|. |.. +++.+++ ||. -.+.+..|+.++|.+|+++.+....+ -++.-+
T Consensus 226 e~lf~l~N~~~~~~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl 302 (450)
T PRK14087 226 EIFFTIFNNFIENDKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAI 302 (450)
T ss_pred HHHHHHHHHHHHcCCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 3444444444333333 4555554 444 4788888 885 67778889999999999999976432 234456
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 93 EKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 93 ~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
..|+..+.| +.+.|..+|.++...+..... ..++|.+...++++.+
T Consensus 303 ~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~------------------~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 303 NFISNYYSD-DVRKIKGSVSRLNFWSQQNPE------------------EKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHccCC-CHHHHHHHHHHHHHHHhcccC------------------CCCCCHHHHHHHHhhc
Confidence 778887775 778888888876544433210 0346666666666654
No 86
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.38 E-value=0.028 Score=47.79 Aligned_cols=89 Identities=15% Similarity=0.081 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
..+.|+..++.... ++.+|+++|.+..+.+++.+ |+. .++|+.|+.++...+++.++.+..+. ++..+..|++.
T Consensus 118 ~~~~L~~~le~~~~--~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~ 192 (319)
T PRK00440 118 AQQALRRTMEMYSQ--NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYV 192 (319)
T ss_pred HHHHHHHHHhcCCC--CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34567777775433 34566778888888888888 776 58999999999999999998766543 34457778887
Q ss_pred CCCCCHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRA 114 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A 114 (199)
+.| ..+.+.+.++.+
T Consensus 193 ~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 193 SEG-DMRKAINALQAA 207 (319)
T ss_pred cCC-CHHHHHHHHHHH
Confidence 654 344444444433
No 87
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.35 E-value=0.023 Score=52.28 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=59.7
Q ss_pred CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 039253 34 KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQ 112 (199)
Q Consensus 34 ~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~ 112 (199)
..+.+||.+.+ ..+|+.+.+ +-..+.+++|+.++...+++.+....... ++.++..+++.+.|+|-.+++.++.
T Consensus 113 ~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~ 187 (489)
T CHL00195 113 QPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLS 187 (489)
T ss_pred CCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555543 567777775 45788999999999999998887654332 4667899999999999999999998
Q ss_pred HHH
Q 039253 113 RAC 115 (199)
Q Consensus 113 ~A~ 115 (199)
.+.
T Consensus 188 ~~~ 190 (489)
T CHL00195 188 KII 190 (489)
T ss_pred HHH
Confidence 764
No 88
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.34 E-value=0.015 Score=56.39 Aligned_cols=141 Identities=16% Similarity=0.226 Sum_probs=91.6
Q ss_pred HHHHHHHHhCC-------------CCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC----
Q 039253 21 PNQLLTEMDGL-------------SAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK---- 83 (199)
Q Consensus 21 ~~~lL~~ld~~-------------~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~---- 83 (199)
.+.|+..||.= -..++|++|+|||.. .|+++|+. |++ .|.|..++.++..+|.+.++-.
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~ 512 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIE 512 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHH
Confidence 46777777731 122679999999987 59999999 995 7889999999999999998841
Q ss_pred -CCCC------CcccHHHHHh-hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 84 -SPVS------KDVDLEKLAQ-FTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 84 -~~~~------~~~~l~~la~-~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
..+. .+--+..|++ .+..+-.+.|+.+++..+..++.+...... .....|+.+++...|-
T Consensus 513 ~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~------------~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 513 RNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKS------------LKHIEINGDNLHDYLG 580 (784)
T ss_pred HhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC------------CceeeecHHHHHHHhC
Confidence 1111 1222444543 445677788888888877666666542110 0114578888887775
Q ss_pred hcccc-------ccccCCcccccchhhhh
Q 039253 156 YACKS-------QSRGFGDEFGFCETAVA 177 (199)
Q Consensus 156 ~~~Ps-------~~r~~~~~~~~~~~~~~ 177 (199)
.-+-. ..-|+.+=+.|+..+|.
T Consensus 581 ~~~~~~~~~~~~~~~G~~~gla~t~~gg~ 609 (784)
T PRK10787 581 VQRFDYGRADNENRVGQVTGLAWTEVGGD 609 (784)
T ss_pred CCccccchhhcCCCceEEEEeEEeCCCeE
Confidence 33211 12266666667766654
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.016 Score=53.26 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+. +...+++|++|+.++.|.+.+++ |+ ..++|..++.++....++..+.+.... ++..+..|
T Consensus 129 s~~A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lI 203 (491)
T PRK14964 129 SNSAFNALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLI 203 (491)
T ss_pred CHHHHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567889999985 34567888888999999999998 87 568999999999999999988766544 34557788
Q ss_pred HhhCCCCCHHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~ 117 (199)
++.+.| +.+++.++++.+...
T Consensus 204 a~~s~G-slR~alslLdqli~y 224 (491)
T PRK14964 204 AENSSG-SMRNALFLLEQAAIY 224 (491)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 888865 888888888776543
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=96.31 E-value=0.025 Score=46.87 Aligned_cols=91 Identities=12% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCCC---CccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDII---DPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~l---D~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
.+|...++.+....+.++|+++..|..+ .+.+++ ||. ..+.+..|+.++|..+++.......+. ++.-+..|
T Consensus 117 ~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L 194 (234)
T PRK05642 117 EALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFI 194 (234)
T ss_pred HHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455666655455566777777666444 688999 985 677788999999999999655443332 34456777
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~ 115 (199)
+++.+ =+++.+..+++.-.
T Consensus 195 ~~~~~-~d~r~l~~~l~~l~ 213 (234)
T PRK05642 195 LTRGT-RSMSALFDLLERLD 213 (234)
T ss_pred HHhcC-CCHHHHHHHHHHHH
Confidence 88766 36677766666543
No 91
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.021 Score=54.28 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.||..|+. ....+.+|++|+.+..+++.+++ |+ .++.|..++.++-...++..+.+.... .+..+..|
T Consensus 131 S~~A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~I 205 (702)
T PRK14960 131 STHSFNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQI 205 (702)
T ss_pred CHHHHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888888884 34567888888999999999987 87 688999999999999999888765543 34457778
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~ 115 (199)
++.+.| +.+++.+++..+.
T Consensus 206 A~~S~G-dLRdALnLLDQaI 224 (702)
T PRK14960 206 AESAQG-SLRDALSLTDQAI 224 (702)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 887766 7777777776654
No 92
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.20 E-value=0.02 Score=45.44 Aligned_cols=73 Identities=23% Similarity=0.296 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQF 98 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~ 98 (199)
...+.||..|+.. ...+++|++||.+..+.+++++ |. ..++|+.|+.++...+++.. .+. +..+..+++.
T Consensus 111 ~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~ 180 (188)
T TIGR00678 111 AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLAL 180 (188)
T ss_pred HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHH
Confidence 3467788888752 3456677778888999999998 77 48999999999999888876 233 3346666666
Q ss_pred CCC
Q 039253 99 TQG 101 (199)
Q Consensus 99 t~G 101 (199)
+.|
T Consensus 181 ~~g 183 (188)
T TIGR00678 181 AGG 183 (188)
T ss_pred cCC
Confidence 655
No 93
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.19 E-value=0.058 Score=44.81 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=67.6
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhcCCCC-----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 039253 52 ALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPV-----SKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIEND 126 (199)
Q Consensus 52 al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~-----~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~ 126 (199)
.+.+ |+...+++++.+.++-.+++...+..... -.+..+..|++.|.|+... |..+|..+...+..+..
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~~--- 251 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEEK--- 251 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcCC---
Confidence 3556 88889999999999999999988864321 1345688899999999655 99999999888776542
Q ss_pred HHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 127 IRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
..|+.+++..++..++
T Consensus 252 ----------------~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 ----------------REIGGEEVREVIAEID 267 (269)
T ss_pred ----------------CCCCHHHHHHHHHHhh
Confidence 5699999999998875
No 94
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.047 Score=51.48 Aligned_cols=92 Identities=18% Similarity=0.101 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....|.||..|+.. ...+++|++|+.++.+.+.+++ |. ..+.|..|+.++-...++..+.+.... .+..+..|+
T Consensus 146 ~~a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa 220 (598)
T PRK09111 146 TAAFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIA 220 (598)
T ss_pred HHHHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34577888888843 3457777788888899999988 87 579999999999999999988766544 334567778
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRAC 115 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~ 115 (199)
..+.| +.+++.++++.+.
T Consensus 221 ~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 221 RAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 87765 7788877777654
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.12 E-value=0.035 Score=52.48 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=68.8
Q ss_pred EEEEE-eeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 37 IFVIG-VTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 37 VvvI~-aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
+++|+ ||+.++.+++++++ ||. .++|++.+.++...|++..+.+.... ++.-+..|++.+ +.|+...+++..+
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~ 398 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADV 398 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHH
Confidence 45555 55669999999998 997 56888889999999999998865432 233455566654 3566555555555
Q ss_pred HHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 115 CKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
...++.+..... + ......|+.+|+.+++..-+
T Consensus 399 ~~~~~~~~~~~~------~-----~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 399 YGYALYRAAEAG------K-----ENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHhc------c-----CCCCeeECHHHHHHHhCCCc
Confidence 444333321000 0 00125689999999998665
No 96
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.025 Score=52.91 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.||..|+. +...+++|++|+.++.|.+++++ |+. .++|..|+.++...+++..+...... .+..+..|
T Consensus 132 s~~a~naLLK~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lL 206 (563)
T PRK06647 132 SNSAFNALLKTIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWI 206 (563)
T ss_pred CHHHHHHHHHhhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34467788888874 44567888888889999999998 876 68999999999999998888655433 34456667
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRA 114 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A 114 (199)
+..+.| +.+++.++++.+
T Consensus 207 a~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 207 AYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred HHHcCC-CHHHHHHHHHHH
Confidence 777766 566666666543
No 97
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.035 Score=53.01 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.||+.|+. ....+.+|++|+.+..+.+.+++ |+ ..+.|..++.++-...|+..+.+..+. .+..+..|
T Consensus 132 s~~A~NALLKtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~I 206 (709)
T PRK08691 132 SKSAFNAMLKTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLL 206 (709)
T ss_pred CHHHHHHHHHHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 34467788888885 34567888899999999999987 87 667888899999999999998876544 34457788
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACK 116 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~ 116 (199)
++.+. -+.+++.++++.+..
T Consensus 207 a~~A~-GslRdAlnLLDqaia 226 (709)
T PRK08691 207 GRAAA-GSMRDALSLLDQAIA 226 (709)
T ss_pred HHHhC-CCHHHHHHHHHHHHH
Confidence 88775 478888888877654
No 98
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.99 E-value=0.015 Score=51.12 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
..|.||+.|+ ++..++++|.+|++++.|.|.+++ |. ..+.|++|+.++..+.|...
T Consensus 148 AaNaLLKtLE--EPp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 148 AANALLKTLE--EPPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHhc--CCCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 4599999999 567789999999999999999999 98 68999999999998888764
No 99
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.93 E-value=0.011 Score=57.85 Aligned_cols=49 Identities=20% Similarity=0.393 Sum_probs=42.3
Q ss_pred CCCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC
Q 039253 33 AKKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS 84 (199)
Q Consensus 33 ~~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~ 84 (199)
.+..+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..||+.+...+
T Consensus 304 ~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 304 ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 356789999999976 59999999 998 58899999999999998877553
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.93 E-value=0.028 Score=52.85 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.||..|+. +...+++|++|+.+..|.+++++ |+. .++|+.|+.++....++..+.+.... ++..+..++.
T Consensus 134 ~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 134 SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 356788888884 34567888888899999999998 875 78999999999999999888665432 2344667777
Q ss_pred hCCCCCHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQR 113 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~ 113 (199)
.+.| +.+++.++++.
T Consensus 209 lS~G-dlR~AlnlLek 223 (605)
T PRK05896 209 LADG-SLRDGLSILDQ 223 (605)
T ss_pred HcCC-cHHHHHHHHHH
Confidence 7765 55665555555
No 101
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.026 Score=52.97 Aligned_cols=89 Identities=18% Similarity=0.142 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....|.||..|+. +...+++|++|+.++.|.+.+++ |. ..++|..++.++-...++..+.+..+. .+..+..|+
T Consensus 133 ~~a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 133 TNAFNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred HHHHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3457889999984 44568888899999999999998 76 478899899988888888877665443 334466667
Q ss_pred hhCCCCCHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQ 112 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~ 112 (199)
..+.| +.+++.++++
T Consensus 208 ~~a~G-~lr~al~~Ld 222 (576)
T PRK14965 208 RKGDG-SMRDSLSTLD 222 (576)
T ss_pred HHcCC-CHHHHHHHHH
Confidence 66665 4444444443
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.87 E-value=0.027 Score=53.16 Aligned_cols=89 Identities=15% Similarity=0.150 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.||..|+. ....+++|++||.++.+.+.+++ |+. +|+|+.++.++-..+|+..+.+.... ++..+..|++
T Consensus 134 ~a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 134 EAFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred HHHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 446788888874 33568888899999999999998 874 68899999999999998888665432 3445677787
Q ss_pred hCCCCCHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQR 113 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~ 113 (199)
.+.| +.+++.+++++
T Consensus 209 ~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 209 RAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 6653 33444444443
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.078 Score=46.54 Aligned_cols=91 Identities=20% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+. +....++|++|+.+..+.+++.+ |+. .++|+.|+.++...++...+.+.... ++..+..|+.
T Consensus 123 ~~~~~ll~~le~--~~~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~ 197 (367)
T PRK14970 123 AAFNAFLKTLEE--PPAHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQ 197 (367)
T ss_pred HHHHHHHHHHhC--CCCceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345677777764 23345677778888999999998 764 68999999999999998888765543 3445677777
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRAC 115 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~ 115 (199)
.+.| +.+.+.+.++...
T Consensus 198 ~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 198 KADG-ALRDALSIFDRVV 214 (367)
T ss_pred hCCC-CHHHHHHHHHHHH
Confidence 6654 5555555555443
No 104
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.84 E-value=0.053 Score=53.19 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
.....|.||..|+. +...+++|++|+.+..|.+.+++ |. .++.|..++.++-..+|++.+....+. .+..+..|
T Consensus 132 T~eAqNALLKtLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lI 206 (944)
T PRK14949 132 SRSSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLL 206 (944)
T ss_pred CHHHHHHHHHHHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34567888888884 34567788889999999999998 87 778999999999999999888654433 23346778
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~ 115 (199)
++.+.| +.+++-+++..+.
T Consensus 207 A~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 207 AKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 887766 4566666665443
No 105
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.64 E-value=0.06 Score=49.76 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHH
Q 039253 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEK 94 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~ 94 (199)
-+....|.||+.++ ++...|++|.||..+..|++.+++ |. .++.|..-+.++-...|...+.+..+. .+--+..
T Consensus 131 LS~~afNALLKTLE--EPP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ 205 (515)
T COG2812 131 LSKQAFNALLKTLE--EPPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSL 205 (515)
T ss_pred hhHHHHHHHhcccc--cCccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHH
Confidence 36678899999998 566779999999999999999998 76 346677778889999999999877665 3334666
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHH
Q 039253 95 LAQFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~ 117 (199)
+|+.++| |.+|-..+++.|...
T Consensus 206 ia~~a~G-s~RDalslLDq~i~~ 227 (515)
T COG2812 206 IARAAEG-SLRDALSLLDQAIAF 227 (515)
T ss_pred HHHHcCC-ChhhHHHHHHHHHHc
Confidence 7777776 677777777776554
No 106
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.64 E-value=0.066 Score=52.30 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||+.|+.. ...+++|++|+.++.|-+.+++ |. .+++|..++.++-..+|+..+.+..+. .+..+..|
T Consensus 133 t~~a~NaLLK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lL 207 (824)
T PRK07764 133 TPQGFNALLKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLV 207 (824)
T ss_pred CHHHHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 345678888888853 3467888888999999999998 76 678999999999999998888665543 23345556
Q ss_pred HhhCCCCCHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQR 113 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~ 113 (199)
++.+.| +.+++.+++++
T Consensus 208 a~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 208 IRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 666554 55555555544
No 107
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.63 E-value=0.091 Score=47.12 Aligned_cols=85 Identities=27% Similarity=0.387 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeeC--CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC-----CCCCcccHH
Q 039253 21 PNQLLTEMDGLSAKKTIFVIGVTN--RPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS-----PVSKDVDLE 93 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~VvvI~aTN--~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~-----~~~~~~~l~ 93 (199)
.+.|+..|+ ...+++|++|+ ....+++++++ |+ ..+.|+.|+.++...+++..+... .+. +..+.
T Consensus 109 q~~LL~~le----~~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~ 180 (413)
T PRK13342 109 QDALLPHVE----DGTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALD 180 (413)
T ss_pred HHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHH
Confidence 345555554 24566776653 34589999999 98 789999999999999999887542 222 33466
Q ss_pred HHHhhCCCCCHHHHHHHHHHH
Q 039253 94 KLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 94 ~la~~t~G~sgaDI~~lv~~A 114 (199)
.|++.+.| ..+.+.++++.+
T Consensus 181 ~l~~~s~G-d~R~aln~Le~~ 200 (413)
T PRK13342 181 ALARLANG-DARRALNLLELA 200 (413)
T ss_pred HHHHhCCC-CHHHHHHHHHHH
Confidence 77776644 455555555554
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.063 Score=51.55 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.||..|+. +...+++|++|+.++.|.+.+++ |+. ++.|..|+.++-...++..+.+..+. .+..+..+|.
T Consensus 133 ~A~NALLKtLEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~ 207 (725)
T PRK07133 133 SAFNALLKTLEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK 207 (725)
T ss_pred HHHHHHHHHhhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 457788888884 44567888888999999999998 885 89999999999999998887665543 2333666777
Q ss_pred hCCCCCHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRA 114 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A 114 (199)
.+.| +.+++..+++.+
T Consensus 208 lS~G-slR~AlslLekl 223 (725)
T PRK07133 208 LSSG-SLRDALSIAEQV 223 (725)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 6664 445555555543
No 109
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.56 E-value=0.041 Score=53.98 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCEEEEEeeCC---CCCCCccccCCCccce-EEEecCCCHHHHHHHHHHhhcCCC-CCCcccHHHHHhhCCCCCHHHHH
Q 039253 34 KKTIFVIGVTNR---PDIIDPALLRPGRLDQ-LIYIPLPVEKSRLQIFKACLRKSP-VSKDVDLEKLAQFTQGFSGADIT 108 (199)
Q Consensus 34 ~~~VvvI~aTN~---~~~lD~al~R~gRfd~-~i~~~~P~~~~R~~il~~~l~~~~-~~~~~~l~~la~~t~G~sgaDI~ 108 (199)
..+|+||+.+|. ++.+++.+.. ||.. +|.|++++.++..+||+..+.... .-.+.-+..+|+.+. ...+|++
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA-q~SGDAR 976 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA-NVSGDIR 976 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh-hcCCHHH
Confidence 456999999986 7778888888 7764 488899999999999999887542 112334666666544 3346766
Q ss_pred HHHH
Q 039253 109 EICQ 112 (199)
Q Consensus 109 ~lv~ 112 (199)
.++.
T Consensus 977 KALD 980 (1164)
T PTZ00112 977 KALQ 980 (1164)
T ss_pred HHHH
Confidence 5543
No 110
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.53 E-value=0.02 Score=55.99 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=53.0
Q ss_pred CCCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-----CcccHHHHHhhCCCC
Q 039253 33 AKKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-----KDVDLEKLAQFTQGF 102 (199)
Q Consensus 33 ~~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~ 102 (199)
.+..+.+|++|+.. ..+|+++.| ||. .|.++.|+.+++..||+.+...+... .+..+..++..+.+|
T Consensus 299 ~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 299 ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 35678999999986 458999999 996 58999999999999999887665332 233466667777766
Q ss_pred CH
Q 039253 103 SG 104 (199)
Q Consensus 103 sg 104 (199)
-.
T Consensus 376 i~ 377 (852)
T TIGR03346 376 IT 377 (852)
T ss_pred cc
Confidence 43
No 111
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.09 Score=47.89 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+. +...+++|++||.+..|.+++++ |+. .++|..|+.++-...++..+.+.... ++..+..|+.
T Consensus 136 ~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 136 EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346778888885 33467788888999999999998 874 68999999999888888887665433 3445677787
Q ss_pred hCCCCCHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQR 113 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~ 113 (199)
.+.| +.+++.+.++.
T Consensus 211 ~s~g-dlr~a~~~Lek 225 (451)
T PRK06305 211 AAQG-SLRDAESLYDY 225 (451)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 7654 44555455444
No 112
>PRK04132 replication factor C small subunit; Provisional
Probab=95.44 E-value=0.16 Score=49.72 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.|+..|+. +...+.+|++||.++.+.+++++ |. ..+.|+.|+.++-...++..+.+..+. ++..+..|+
T Consensus 644 ~~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia 718 (846)
T PRK04132 644 QDAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 718 (846)
T ss_pred HHHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3456788888884 34567899999999999999998 86 788999999998888888887654433 345678888
Q ss_pred hhCCC
Q 039253 97 QFTQG 101 (199)
Q Consensus 97 ~~t~G 101 (199)
..+.|
T Consensus 719 ~~s~G 723 (846)
T PRK04132 719 YIAEG 723 (846)
T ss_pred HHcCC
Confidence 87765
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=95.43 E-value=0.082 Score=48.40 Aligned_cols=87 Identities=17% Similarity=0.125 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
..++.|+..++. .+..+|++||.+..+++..+| +....|.|+.|+..+...+++..+....+. ++..+..|++
T Consensus 117 ~~~~aL~~~l~~----~~~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~ 190 (482)
T PRK04195 117 GGARAILELIKK----AKQPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE 190 (482)
T ss_pred hHHHHHHHHHHc----CCCCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346777777763 233567788999999884444 455789999999999999999998765543 3445777888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRAC 115 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~ 115 (199)
.+. +||..++....
T Consensus 191 ~s~----GDlR~ain~Lq 204 (482)
T PRK04195 191 RSG----GDLRSAINDLQ 204 (482)
T ss_pred HcC----CCHHHHHHHHH
Confidence 654 47776666543
No 114
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.35 E-value=0.063 Score=46.91 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLA 96 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la 96 (199)
.....|.||+.|+. +..++++|.+|+.++.|.|.+++ |... +.|++|+.++-.+.|+..... ..+.....++
T Consensus 119 ~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l 190 (328)
T PRK05707 119 NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSNEESLQWLQQALPE---SDERERIELL 190 (328)
T ss_pred CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCHHHHHHHHHHhccc---CChHHHHHHH
Confidence 34578999999984 44678999999999999999999 9866 899999999888888765421 1222344556
Q ss_pred hhCCCCCH
Q 039253 97 QFTQGFSG 104 (199)
Q Consensus 97 ~~t~G~sg 104 (199)
..+.|-.+
T Consensus 191 ~la~Gsp~ 198 (328)
T PRK05707 191 TLAGGSPL 198 (328)
T ss_pred HHcCCCHH
Confidence 66665433
No 115
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.099 Score=48.55 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||+.|+. ....+++|++|+.++.+.+.+++ |. ..++|..|+.++-...++..+.+..+. .+..+..|
T Consensus 132 s~~a~naLLK~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~l 206 (527)
T PRK14969 132 SKSAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLL 206 (527)
T ss_pred CHHHHHHHHHHHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44567889999985 34567888888889999998887 76 789999999999998888888655443 23446777
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACK 116 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~ 116 (199)
++.+. -+.+++.++++.+..
T Consensus 207 a~~s~-Gslr~al~lldqai~ 226 (527)
T PRK14969 207 ARAAA-GSMRDALSLLDQAIA 226 (527)
T ss_pred HHHcC-CCHHHHHHHHHHHHH
Confidence 87765 467777777776643
No 116
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.26 E-value=0.3 Score=42.83 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC-CCCccccCCCccceEEEecCCCH-HHHHHHHHHhh
Q 039253 17 ADRIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD-IIDPALLRPGRLDQLIYIPLPVE-KSRLQIFKACL 81 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~-~lD~al~R~gRfd~~i~~~~P~~-~~R~~il~~~l 81 (199)
..++.+.|+..|+.-. ...++++|+|+|-.+ .++++++. ||...+.++.|.. ++|.+|++...
T Consensus 141 ~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 141 EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 4467788888886321 124688888888544 58999999 9999999999866 99999998854
No 117
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.09 E-value=0.27 Score=43.19 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC-CCCccccCCCccceEEEecCCCH-HHHHHHHHHhh
Q 039253 17 ADRIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD-IIDPALLRPGRLDQLIYIPLPVE-KSRLQIFKACL 81 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~-~lD~al~R~gRfd~~i~~~~P~~-~~R~~il~~~l 81 (199)
...+.+.|+..|+.=. ...++++|+|+|-.+ .++++++. ||..++.++.|.. ++|.+|++...
T Consensus 144 ~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 144 EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhh
Confidence 3456677888775310 124578888887544 69999999 9999999999976 89999998854
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.15 Score=47.99 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....|.||..|+. ....+++|++|+.++.|.+.+++ |. .+++|..++.++-...++.++.+.... .+..+..+
T Consensus 131 t~~A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~I 205 (584)
T PRK14952 131 TTAGFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLV 205 (584)
T ss_pred CHHHHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33467888888884 34578888888999999999998 84 689999999999998998888765443 23334555
Q ss_pred HhhCCCCCHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQR 113 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~ 113 (199)
++.+.| +.+++.++++.
T Consensus 206 a~~s~G-dlR~aln~Ldq 222 (584)
T PRK14952 206 IRAGGG-SPRDTLSVLDQ 222 (584)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 554443 44444444433
No 119
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.00 E-value=0.092 Score=43.07 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=57.3
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeeCCCCC---CCccccCCCccce--EEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHH
Q 039253 21 PNQLLTEMDGLSAKKTIFVIGVTNRPDI---IDPALLRPGRLDQ--LIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEK 94 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~VvvI~aTN~~~~---lD~al~R~gRfd~--~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~ 94 (199)
-..|...++.+....+-+||.+-..|.. +++.+.+ ||.. .+.+..|+.+.|..|++.......+. ++.-+..
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3455555555544455556655555665 4677888 8775 88889999999999999999766554 3444667
Q ss_pred HHhhCCCCCHHHHHHHHHHHH
Q 039253 95 LAQFTQGFSGADITEICQRAC 115 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~ 115 (199)
|++... -+.++|..++.+-.
T Consensus 194 l~~~~~-~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 194 LARRFR-RDVRELEGALNRLD 213 (219)
T ss_dssp HHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHhhc-CCHHHHHHHHHHHH
Confidence 788765 47777777777643
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.97 E-value=0.16 Score=45.78 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCEEEEEeeCCCCCCC---ccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHH
Q 039253 35 KTIFVIGVTNRPDIID---PALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADIT 108 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD---~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~ 108 (199)
.+-+|+.+-..|..+. +.+++ ||. ..+.+.+|+.+.|..||+.......+. ++.-+..+|.... =+.++|.
T Consensus 208 ~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLe 284 (408)
T COG0593 208 GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELE 284 (408)
T ss_pred CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHH
Confidence 3345665555577666 88888 987 567778899999999999977665554 3444666777654 4677777
Q ss_pred HHHHHHHHHHHHH
Q 039253 109 EICQRACKDATRE 121 (199)
Q Consensus 109 ~lv~~A~~~a~~~ 121 (199)
.++......+...
T Consensus 285 gaL~~l~~~a~~~ 297 (408)
T COG0593 285 GALNRLDAFALFT 297 (408)
T ss_pred HHHHHHHHHHHhc
Confidence 7776665555433
No 121
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.15 Score=44.94 Aligned_cols=80 Identities=14% Similarity=0.098 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQF 98 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~ 98 (199)
...|.||+.|+. +..++++|..|+.|+.+.|.++. |+ ..+.|++|+.++-..+++.......+. +..+..++..
T Consensus 156 ~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~ 229 (351)
T PRK09112 156 NAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQR 229 (351)
T ss_pred HHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHH
Confidence 456778888885 33456777778889999999998 88 699999999999999998753322222 2335667777
Q ss_pred CCCCCH
Q 039253 99 TQGFSG 104 (199)
Q Consensus 99 t~G~sg 104 (199)
+.|-..
T Consensus 230 s~G~pr 235 (351)
T PRK09112 230 SKGSVR 235 (351)
T ss_pred cCCCHH
Confidence 765433
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.88 E-value=0.17 Score=47.22 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
+....+.||..|+. +...+++|++|+.+..+.+.+++ |. ..++|..++.++-...++..+.+..+. .+..+..|
T Consensus 132 s~~a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~I 206 (546)
T PRK14957 132 SKQSFNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYI 206 (546)
T ss_pred cHHHHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34467788888884 33556777788889999999888 77 889999999999888888887765443 34446667
Q ss_pred HhhCCCCCHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRA 114 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A 114 (199)
+..+. -+.+++-++++.+
T Consensus 207 a~~s~-GdlR~alnlLek~ 224 (546)
T PRK14957 207 AYHAK-GSLRDALSLLDQA 224 (546)
T ss_pred HHHcC-CCHHHHHHHHHHH
Confidence 77664 3555555555543
No 123
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=94.81 E-value=0.009 Score=39.54 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=18.7
Q ss_pred ccccHHHHHHHHHhccccccc
Q 039253 143 AEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 143 ~~it~~df~~Al~~~~Ps~~r 163 (199)
.+|+++||..||+.++||++.
T Consensus 28 p~it~~DF~~Al~~~kpSVs~ 48 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQ 48 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-H
T ss_pred CCCCHHHHHHHHHHcCCCCCH
Confidence 479999999999999999986
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.3 Score=45.92 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.||..|+.. ...+++|++|+.++.+.+.+++ |.. .++|..++..+-..+++..+....+. ++..+..|+.
T Consensus 135 ~a~naLLk~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 135 AAFNALLKTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4567788888753 3456777778888889999887 764 68899999999998888887665443 3344777888
Q ss_pred hCCCCCHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRA 114 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A 114 (199)
.+.| +.+++.+.++..
T Consensus 210 ~s~G-dlr~al~~LekL 225 (585)
T PRK14950 210 AATG-SMRDAENLLQQL 225 (585)
T ss_pred HcCC-CHHHHHHHHHHH
Confidence 7776 777777776653
No 125
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.29 E-value=0.083 Score=49.92 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=63.3
Q ss_pred CEEEEEeeCCC--CCCCccccCCCccc---eEEEec--CC-CHHHHHHHHHHhhc---CCCCC---CcccHHHHHh----
Q 039253 36 TIFVIGVTNRP--DIIDPALLRPGRLD---QLIYIP--LP-VEKSRLQIFKACLR---KSPVS---KDVDLEKLAQ---- 97 (199)
Q Consensus 36 ~VvvI~aTN~~--~~lD~al~R~gRfd---~~i~~~--~P-~~~~R~~il~~~l~---~~~~~---~~~~l~~la~---- 97 (199)
++.||+++|.. ..+|+.|+. ||+ .+++|+ +| +.+.|..+.+.+.+ +.... ++--+.+|.+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 57889999863 689999999 999 667664 35 45666666554332 22111 1222333322
Q ss_pred h---CC--CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 98 F---TQ--GFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 98 ~---t~--G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
. -. -.+.++|..++++|...|..+. ...|+.+|+.+|++..+.
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~-------------------~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSG-------------------KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcC-------------------CceecHHHHHHHHHHHHH
Confidence 1 11 2457889999998854443221 156999999999876543
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.23 E-value=0.24 Score=41.67 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=36.8
Q ss_pred CEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 36 TIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 36 ~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+..||+|+|.. ..+++++++ || ..+.++.|+.++-.+|++.++
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56789999975 367999999 99 689999999999999999875
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.20 E-value=0.11 Score=44.38 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=43.2
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+.|...|+... .++.+|++||.++.+++++++ ||. .+.|+.|+.+++..+++.++
T Consensus 119 ~~L~~~le~~~--~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 119 RHLRSFMEAYS--KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHHHHHHhcC--CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 44555566543 456788899999999999999 995 78999999999998877654
No 128
>PLN03025 replication factor C subunit; Provisional
Probab=94.11 E-value=0.29 Score=42.20 Aligned_cols=77 Identities=16% Similarity=0.099 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
.-+.|+..|+... ..+.+|.+||.++.+.+++++ |. ..+.|+.|+.++....++..+.+..+. ++..+..++..
T Consensus 115 aq~aL~~~lE~~~--~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~ 189 (319)
T PLN03025 115 AQQALRRTMEIYS--NTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFT 189 (319)
T ss_pred HHHHHHHHHhccc--CCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3466777776433 234577789999999999998 86 579999999999999999888765443 34457777776
Q ss_pred CCC
Q 039253 99 TQG 101 (199)
Q Consensus 99 t~G 101 (199)
+.|
T Consensus 190 ~~g 192 (319)
T PLN03025 190 ADG 192 (319)
T ss_pred cCC
Confidence 543
No 129
>smart00350 MCM minichromosome maintenance proteins.
Probab=93.82 E-value=0.57 Score=43.30 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC-------------CCCccccCCCccceEEEe-cCCCHHHH
Q 039253 19 RIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD-------------IIDPALLRPGRLDQLIYI-PLPVEKSR 73 (199)
Q Consensus 19 r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~-------------~lD~al~R~gRfd~~i~~-~~P~~~~R 73 (199)
...+.|+..|+.=. -..+..||+|+|-.+ .|++++++ |||-.+.+ ..|+.+..
T Consensus 315 ~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d 392 (509)
T smart00350 315 SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERD 392 (509)
T ss_pred HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHH
Confidence 45566777775311 124578999999542 69999999 99986555 68999999
Q ss_pred HHHHHHhhc
Q 039253 74 LQIFKACLR 82 (199)
Q Consensus 74 ~~il~~~l~ 82 (199)
.+|.++.+.
T Consensus 393 ~~i~~~i~~ 401 (509)
T smart00350 393 RELAKHVVD 401 (509)
T ss_pred HHHHHHHHH
Confidence 999988664
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.74 E-value=0.44 Score=45.16 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.||..|+.. ...+++|++|+.+..|-+++++ |. ..++|..++.++-...++..+.+..+. ....+..|+
T Consensus 135 ~~a~naLLK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La 209 (614)
T PRK14971 135 QAAFNAFLKTLEEP--PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIA 209 (614)
T ss_pred HHHHHHHHHHHhCC--CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34567888888853 3456677777788999999998 76 459999999999888888888766554 233467778
Q ss_pred hhCCCCCHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRA 114 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A 114 (199)
..+.| +.+++.+.++..
T Consensus 210 ~~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 210 QKADG-GMRDALSIFDQV 226 (614)
T ss_pred HHcCC-CHHHHHHHHHHH
Confidence 77754 566655555443
No 131
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.68 E-value=0.19 Score=43.52 Aligned_cols=63 Identities=24% Similarity=0.286 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHhCC----------CCCCCEEEEEeeC-----CCCCCCccccCCCccceEEEecCC-CHHHHHHHHHHhh
Q 039253 18 DRIPNQLLTEMDGL----------SAKKTIFVIGVTN-----RPDIIDPALLRPGRLDQLIYIPLP-VEKSRLQIFKACL 81 (199)
Q Consensus 18 ~r~~~~lL~~ld~~----------~~~~~VvvI~aTN-----~~~~lD~al~R~gRfd~~i~~~~P-~~~~R~~il~~~l 81 (199)
..+-+.||..|+.- .-..+.+||+|+| .-..+++|+++ ||...++++.| ...+...++....
T Consensus 126 p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 126 PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCc
Confidence 45778888888862 2235688898889 78889999999 99999999999 5555555555554
Q ss_pred c
Q 039253 82 R 82 (199)
Q Consensus 82 ~ 82 (199)
.
T Consensus 204 ~ 204 (329)
T COG0714 204 G 204 (329)
T ss_pred c
Confidence 3
No 132
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.59 E-value=0.2 Score=44.68 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=61.7
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
-.+.|+..|+. +...+++|++|+.+..+-+++.+ |.. .++|..++.++-...++..+...... ++..+..|+..
T Consensus 143 ~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 143 AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566666663 33455666777788899999988 775 78899999988888888887655432 34457778887
Q ss_pred CCCCCHHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRAC 115 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A~ 115 (199)
+.| +.+.+.+.++.+.
T Consensus 218 s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 218 AQG-SMRDAQSILDQVI 233 (397)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 765 5556656555543
No 133
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=93.31 E-value=0.68 Score=44.97 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhCC---CC------CCCEEEEEeeCCC-------------------------CCCCccccCCCccceEE
Q 039253 18 DRIPNQLLTEMDGL---SA------KKTIFVIGVTNRP-------------------------DIIDPALLRPGRLDQLI 63 (199)
Q Consensus 18 ~r~~~~lL~~ld~~---~~------~~~VvvI~aTN~~-------------------------~~lD~al~R~gRfd~~i 63 (199)
..+.+.||+.||.- .. -.++++|+|||.- ..+.|.|+. |+|.+|
T Consensus 571 ~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii 648 (758)
T PRK11034 571 PDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNII 648 (758)
T ss_pred HHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEE
Confidence 35788899999832 11 1468899999932 236688888 999999
Q ss_pred EecCCCHHHHHHHHHHhhcC---------CCCC-CcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 64 YIPLPVEKSRLQIFKACLRK---------SPVS-KDVDLEKLAQFT--QGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 64 ~~~~P~~~~R~~il~~~l~~---------~~~~-~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
.|++.+.++...|+..++.. ..+. ++--++.|++.. ..|-.+.|+.++++-...++.+.+
T Consensus 649 ~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 649 WFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999888742 2222 233355666543 457788899999888877777664
No 134
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.28 E-value=1 Score=39.83 Aligned_cols=63 Identities=21% Similarity=0.251 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHhCC---------C--CCCCEEEEEeeCCCC-CCCccccCCCccceEEEecCCC-HHHHHHHHHHhh
Q 039253 17 ADRIPNQLLTEMDGL---------S--AKKTIFVIGVTNRPD-IIDPALLRPGRLDQLIYIPLPV-EKSRLQIFKACL 81 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~---------~--~~~~VvvI~aTN~~~-~lD~al~R~gRfd~~i~~~~P~-~~~R~~il~~~l 81 (199)
...+.+.|+..|+.- . ...++++|+|.|-.+ .++++++. ||..++.+..|+ .+.|.+|++...
T Consensus 157 ~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 157 DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 345667788887541 0 124578888777544 59999999 999999999997 599999998864
No 135
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=93.27 E-value=0.81 Score=38.52 Aligned_cols=67 Identities=12% Similarity=0.219 Sum_probs=53.4
Q ss_pred HHHHHHHHhCCC--CCCCEEEEEeeCCCCCCCccccC-C--------------------CccceEEEecCCCHHHHHHHH
Q 039253 21 PNQLLTEMDGLS--AKKTIFVIGVTNRPDIIDPALLR-P--------------------GRLDQLIYIPLPVEKSRLQIF 77 (199)
Q Consensus 21 ~~~lL~~ld~~~--~~~~VvvI~aTN~~~~lD~al~R-~--------------------gRfd~~i~~~~P~~~~R~~il 77 (199)
-+.|...|||-- ...+|++.+|+|+-..+++.+.. . .||.-.|.|..|+.++-.+|+
T Consensus 124 yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV 203 (249)
T PF05673_consen 124 YKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIV 203 (249)
T ss_pred HHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHH
Confidence 467777788742 34679999999998877775542 2 389999999999999999999
Q ss_pred HHhhcCCCCC
Q 039253 78 KACLRKSPVS 87 (199)
Q Consensus 78 ~~~l~~~~~~ 87 (199)
+.++....+.
T Consensus 204 ~~~~~~~g~~ 213 (249)
T PF05673_consen 204 RHYAERYGLE 213 (249)
T ss_pred HHHHHHcCCC
Confidence 9999877655
No 136
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.26 E-value=0.37 Score=46.51 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=52.4
Q ss_pred CCEEEEEeeCC--CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC-------CCCC-CcccHHHHHhhCCCCCH
Q 039253 35 KTIFVIGVTNR--PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK-------SPVS-KDVDLEKLAQFTQGFSG 104 (199)
Q Consensus 35 ~~VvvI~aTN~--~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~-------~~~~-~~~~l~~la~~t~G~sg 104 (199)
..+++|++|.. ...+++++++ |. ..+.|+.++.+++..+++..+.. ..+. ++.-+..|++.+.| ..
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~ 211 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DA 211 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CH
Confidence 45677776643 3578999998 74 46899999999999999998862 2222 23346777876643 45
Q ss_pred HHHHHHHHHHH
Q 039253 105 ADITEICQRAC 115 (199)
Q Consensus 105 aDI~~lv~~A~ 115 (199)
+.+.++++.+.
T Consensus 212 R~lln~Le~a~ 222 (725)
T PRK13341 212 RSLLNALELAV 222 (725)
T ss_pred HHHHHHHHHHH
Confidence 55666666554
No 137
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.18 E-value=0.34 Score=42.44 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQ 97 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~ 97 (199)
....|.||+.|+ ++..++++|..|++++.|.|.+++ |.. .+.|+.|+.++-.+.|.... ... ......++.
T Consensus 122 ~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~ 192 (334)
T PRK07993 122 DAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSREV---TMS-QDALLAALR 192 (334)
T ss_pred HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHH
Confidence 356899999999 466788999999999999999999 887 57999999888877775432 222 222445555
Q ss_pred hCCCCCH
Q 039253 98 FTQGFSG 104 (199)
Q Consensus 98 ~t~G~sg 104 (199)
.+.|-.+
T Consensus 193 la~G~~~ 199 (334)
T PRK07993 193 LSAGAPG 199 (334)
T ss_pred HcCCCHH
Confidence 5655433
No 138
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.17 E-value=0.46 Score=41.41 Aligned_cols=81 Identities=17% Similarity=0.225 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQ 97 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~ 97 (199)
....|.||+.|+. +..++++|.+|+.++.|.|.+++ |. ..+.|+.|+.++-...|... ... ..+...++.
T Consensus 127 ~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~ 196 (319)
T PRK08769 127 RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALD 196 (319)
T ss_pred HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHH
Confidence 3567899999984 55678899999999999999999 87 45678889888777777642 222 223446677
Q ss_pred hCCCCCHHHHH
Q 039253 98 FTQGFSGADIT 108 (199)
Q Consensus 98 ~t~G~sgaDI~ 108 (199)
.+.|-.+.-+.
T Consensus 197 l~~G~p~~A~~ 207 (319)
T PRK08769 197 AARGHPGLAAQ 207 (319)
T ss_pred HcCCCHHHHHH
Confidence 77776554443
No 139
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.56 Score=44.51 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.||..|+. ....+++|++|++++.+-+.+++ |. ..++|..|+.++-...+.....+.... ....+..|+
T Consensus 135 ~~a~naLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La 209 (620)
T PRK14948 135 TAAFNALLKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA 209 (620)
T ss_pred HHHHHHHHHHHhc--CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3467888999984 44567888888899999999998 77 567888888877777777666554332 233466777
Q ss_pred hhCCCCCHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQ 112 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~ 112 (199)
+.+.|- .+++.++++
T Consensus 210 ~~s~G~-lr~A~~lLe 224 (620)
T PRK14948 210 QRSQGG-LRDAESLLD 224 (620)
T ss_pred HHcCCC-HHHHHHHHH
Confidence 777652 244433333
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.86 E-value=1.1 Score=44.18 Aligned_cols=104 Identities=18% Similarity=0.245 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHhCCC---C------CCCEEEEEeeCCCCC-------------------------CCccccCCCccceEE
Q 039253 18 DRIPNQLLTEMDGLS---A------KKTIFVIGVTNRPDI-------------------------IDPALLRPGRLDQLI 63 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~---~------~~~VvvI~aTN~~~~-------------------------lD~al~R~gRfd~~i 63 (199)
..+.+.||+.|+.=. . -.+.+||+|||.... +.|.|+. |+|..+
T Consensus 681 ~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~Ii 758 (852)
T TIGR03346 681 PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIV 758 (852)
T ss_pred HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEE
Confidence 456788888886321 1 145789999998322 3466776 999999
Q ss_pred EecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 64 YIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQFT--QGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 64 ~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
.|.+++.+....|+...+... .+. ++-.+..|++.. ..+..+.|+.++++.....+.+.+
T Consensus 759 vF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 759 VFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred ecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999998887521 111 233356677653 367889999999998888777765
No 141
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.82 E-value=0.25 Score=43.10 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
....|.||+.|+ ++..++++|..|++++.|-|.+++ |.. .+.|+.|+.++..+.+..
T Consensus 122 ~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 122 ESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 356789999999 466778999999999999999999 875 788999999888877764
No 142
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.53 E-value=0.7 Score=43.87 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=59.8
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
-.+.||..|+.. ...+++|++|+.+..|-+.+++ |. ..++|..|+.++-...++..+...... ++..+..|+..
T Consensus 143 a~naLLK~LEeP--p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhCC--CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 356777777743 3346667777888999999987 66 589999999998888888877655432 34456777777
Q ss_pred CCCCCHHHHHHHHH
Q 039253 99 TQGFSGADITEICQ 112 (199)
Q Consensus 99 t~G~sgaDI~~lv~ 112 (199)
+.| +.+++.+.++
T Consensus 218 s~G-dlr~al~eLe 230 (620)
T PRK14954 218 AQG-SMRDAQSILD 230 (620)
T ss_pred hCC-CHHHHHHHHH
Confidence 765 4444444443
No 143
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=92.50 E-value=1.4 Score=41.61 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC---CCCccccCCCccceEEEecC-CCHHHHHHHHHHhh
Q 039253 17 ADRIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD---IIDPALLRPGRLDQLIYIPL-PVEKSRLQIFKACL 81 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~---~lD~al~R~gRfd~~i~~~~-P~~~~R~~il~~~l 81 (199)
...+.+.|+..|+.=. ...++.||+|+|..+ .++++++. ||..++.+.. |+.++|.+|++.++
T Consensus 97 ~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 97 DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 3467788888886311 013578888888765 79999999 9999988875 57788999999877
Q ss_pred c
Q 039253 82 R 82 (199)
Q Consensus 82 ~ 82 (199)
.
T Consensus 175 ~ 175 (589)
T TIGR02031 175 C 175 (589)
T ss_pred H
Confidence 4
No 144
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.44 E-value=0.95 Score=43.71 Aligned_cols=104 Identities=22% Similarity=0.272 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhCCC---------CCCCEEEEEeeCCCC-------------------------CCCccccCCCccceEE
Q 039253 18 DRIPNQLLTEMDGLS---------AKKTIFVIGVTNRPD-------------------------IIDPALLRPGRLDQLI 63 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~~-------------------------~lD~al~R~gRfd~~i 63 (199)
..+.+.|++.||.-. .-.++++|+|||... .+.|.|+. |||.+|
T Consensus 567 ~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi 644 (731)
T TIGR02639 567 PDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAII 644 (731)
T ss_pred HHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEE
Confidence 457788898888531 113578999998742 25677877 999999
Q ss_pred EecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 64 YIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQF--TQGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 64 ~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~--t~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
.|.+.+.++..+|++..+... .+. ++..+..|++. ...|-.+.|+.+++.....++.+.+
T Consensus 645 ~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 645 HFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred EcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 999999999999999988532 111 23335667764 4567888999999888877776664
No 145
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=0.91 Score=39.00 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQ 97 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~ 97 (199)
....|.||..|+. +...+++|.+|+.++.+.+.+++ |. ..++|..|+.++-...++..+... +...+..++.
T Consensus 107 ~~a~naLLK~LEe--pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~ 178 (313)
T PRK05564 107 EQAQNAFLKTIEE--PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIA 178 (313)
T ss_pred HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHH
Confidence 3457889999984 45567777788889999999998 77 489999999988877777654321 1233556666
Q ss_pred hCCCCC
Q 039253 98 FTQGFS 103 (199)
Q Consensus 98 ~t~G~s 103 (199)
.+.|-.
T Consensus 179 ~~~g~~ 184 (313)
T PRK05564 179 FSDGIP 184 (313)
T ss_pred HcCCCH
Confidence 666543
No 146
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.97 E-value=0.72 Score=40.03 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQF 98 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~ 98 (199)
...|.||+.|+.-. +.++|..|+.++.|-|.+++ |. ..+.|+.|+.++-.++|+........ +.+...++..
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccccc--hhHHHHHHHH
Confidence 45678999998643 44677888899999999999 86 78899999999999988876432211 2234677777
Q ss_pred CCCCCHHHH
Q 039253 99 TQGFSGADI 107 (199)
Q Consensus 99 t~G~sgaDI 107 (199)
+.|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 766444333
No 147
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.89 E-value=0.97 Score=39.50 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
.....|.||+.|+ ++..++++|.+|+.++.|.|.+++ |. ..+.|++|+.++-.+.|...
T Consensus 120 ~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 120 TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 3456789999999 466778999999999999999998 86 45688899888888777764
No 148
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.72 E-value=1.2 Score=39.41 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLA 96 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la 96 (199)
.....|.||+.++. +..++++|.+|+.++.+.+.+++ |. ..+.|+.|+.++-.+++....... .+..+..++
T Consensus 154 ~~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~ 225 (365)
T PRK07471 154 NANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGPDL---PDDPRAALA 225 (365)
T ss_pred CHHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcccC---CHHHHHHHH
Confidence 34567888888884 34566888899999999999887 76 678999999999988888764221 122235666
Q ss_pred hhCCCCCH
Q 039253 97 QFTQGFSG 104 (199)
Q Consensus 97 ~~t~G~sg 104 (199)
..+.|-.+
T Consensus 226 ~~s~Gsp~ 233 (365)
T PRK07471 226 ALAEGSVG 233 (365)
T ss_pred HHcCCCHH
Confidence 66665433
No 149
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=89.98 E-value=3.1 Score=39.55 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhCC----C-------CCCCEEEEEeeCCC-CCCCccccCCCccceEEEecCC-CHHHHHHHHHHhh
Q 039253 17 ADRIPNQLLTEMDGL----S-------AKKTIFVIGVTNRP-DIIDPALLRPGRLDQLIYIPLP-VEKSRLQIFKACL 81 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~----~-------~~~~VvvI~aTN~~-~~lD~al~R~gRfd~~i~~~~P-~~~~R~~il~~~l 81 (199)
...+.+.|+..|+.= . ...++++|+|+|-. ..+.++++. ||+.+|.++.| +.++|.++++..+
T Consensus 139 ~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 139 DDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred CHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 345678888888621 0 12358899988853 368899999 99999999987 4688889987654
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=89.33 E-value=0.53 Score=46.05 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=50.8
Q ss_pred CCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC----CCCC-CcccHHHHHhhCCCCC
Q 039253 34 KKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK----SPVS-KDVDLEKLAQFTQGFS 103 (199)
Q Consensus 34 ~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~----~~~~-~~~~l~~la~~t~G~s 103 (199)
+..+.+|++|+..+ ..|+++.| ||.. |.++.|+.++...|++..... ..+. ++..+..++..+.+|.
T Consensus 305 rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 305 RGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred CCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 56688999999764 58999999 9975 799999999999999866532 2221 3444777788887775
Q ss_pred H
Q 039253 104 G 104 (199)
Q Consensus 104 g 104 (199)
+
T Consensus 382 ~ 382 (821)
T CHL00095 382 A 382 (821)
T ss_pred c
Confidence 4
No 151
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=1.5 Score=42.17 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=38.4
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
++|++|+|+|..+.||..++. |++ .|+++==+..+..+|-+.||
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 579999999999999999999 884 56666668899999999988
No 152
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.24 E-value=0.91 Score=39.52 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
.....|.||+.|+. +...+++|.+|+.+..|.+.+++ |. ..++|..|+.++-...|+.
T Consensus 123 ~~~a~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 123 TASAANSLLKFLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CHHHHHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 34467889999984 45567788899999999999998 76 5688888988887777754
No 153
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=88.94 E-value=1.2 Score=37.56 Aligned_cols=73 Identities=14% Similarity=0.178 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQ 97 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~ 97 (199)
....|.||+.|+ ++..++++|..|.+++.|.|.+++ |. ..+.|+.|....-.+.+..++...... ..+.-|.+
T Consensus 103 ~~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~p~~~~--~~l~~i~~ 175 (263)
T PRK06581 103 LNAANSCLKILE--DAPKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQPIADN--KTLDFINR 175 (263)
T ss_pred HHHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhccccccc--HHHHHHHH
Confidence 356789999998 466778899999999999999998 86 567788898887778777777655432 33444444
No 154
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=88.81 E-value=0.93 Score=37.06 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccce------------EEEecCCCHHHHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQ------------LIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~------------~i~~~~P~~~~R~~il~~ 79 (199)
.....|.||..|+ ++..++++|..|..+..+.|.+++ |... .+.+...+.++-.+.++.
T Consensus 67 ~~~A~NaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 67 GIEAQNALLKILE--EPPKNICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred CHHHHHHHHHHhc--CCCCCeEEEEEeCChHhCchHHHh--hheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 3457899999999 466778899999999999999998 7654 466666777777777776
No 155
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=88.73 E-value=4 Score=35.15 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
....|.||+.|+ ++..++++|..|+.++.|-|.+++ |. ..|.|+. +.+.-.+++.
T Consensus 118 ~~AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 118 VNAANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHHHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 356789999998 456678999999999999999999 87 4566654 4444444443
No 156
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=87.34 E-value=2.6 Score=36.91 Aligned_cols=79 Identities=11% Similarity=0.057 Sum_probs=52.8
Q ss_pred CCEEEEEeeCCCC------------CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-Cccc---HHHHHhh
Q 039253 35 KTIFVIGVTNRPD------------IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVD---LEKLAQF 98 (199)
Q Consensus 35 ~~VvvI~aTN~~~------------~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~---l~~la~~ 98 (199)
....||+|+|-.+ .+++|++. ||-..+.+..|+.+.-.+|+.......... .+.- +-.+|..
T Consensus 177 p~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~ 254 (327)
T TIGR01650 177 PAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADM 254 (327)
T ss_pred CCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 3577899999755 46899999 999999999999999999988765433210 0111 1222222
Q ss_pred ----------CCCCCHHHHHHHHHHHH
Q 039253 99 ----------TQGFSGADITEICQRAC 115 (199)
Q Consensus 99 ----------t~G~sgaDI~~lv~~A~ 115 (199)
+.|+|++.+....+.+.
T Consensus 255 tR~~~~~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 255 TRNAFINGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred HHhhhccCCccccccHHHHHHHHHHHH
Confidence 34567777777766543
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=87.20 E-value=4.6 Score=39.83 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=71.7
Q ss_pred hHHHHHHHHHHhCCC---C------CCCEEEEEeeCCCC-----------------------------CCCccccCCCcc
Q 039253 18 DRIPNQLLTEMDGLS---A------KKTIFVIGVTNRPD-----------------------------IIDPALLRPGRL 59 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~---~------~~~VvvI~aTN~~~-----------------------------~lD~al~R~gRf 59 (199)
..+.+.|++.||.-. + -.+.++|+|||... .+.|+|+. |+
T Consensus 682 ~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri 759 (852)
T TIGR03345 682 PDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RM 759 (852)
T ss_pred HHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--ce
Confidence 356778888887431 0 14689999999521 15677787 99
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCC--------CCC---CcccHHHHHhhCCC--CCHHHHHHHHHHHHHHHHHHHH
Q 039253 60 DQLIYIPLPVEKSRLQIFKACLRKS--------PVS---KDVDLEKLAQFTQG--FSGADITEICQRACKDATREEI 123 (199)
Q Consensus 60 d~~i~~~~P~~~~R~~il~~~l~~~--------~~~---~~~~l~~la~~t~G--~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
+ .|.|.+.+.++-..|+...+... .+. ++.-+..|++...+ |-++.|+.+++.-...++.+.+
T Consensus 760 ~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 760 T-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred e-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 7 88999999999999998887532 221 22335667776643 6788899998887777766654
No 158
>PRK10865 protein disaggregation chaperone; Provisional
Probab=86.68 E-value=4.8 Score=39.74 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHhCC--C-C------CCCEEEEEeeCCC-------------------------CCCCccccCCCccceEE
Q 039253 18 DRIPNQLLTEMDGL--S-A------KKTIFVIGVTNRP-------------------------DIIDPALLRPGRLDQLI 63 (199)
Q Consensus 18 ~r~~~~lL~~ld~~--~-~------~~~VvvI~aTN~~-------------------------~~lD~al~R~gRfd~~i 63 (199)
..+.+.|++.|+.- . + -.+.++|+|||.. ..+.|+|+. |+|..+
T Consensus 684 ~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~ii 761 (857)
T PRK10865 684 PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVV 761 (857)
T ss_pred HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeE
Confidence 35677888888632 1 1 1346889999973 134578888 999999
Q ss_pred EecCCCHHHHHHHHHHhhcCC-------CCC---CcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 64 YIPLPVEKSRLQIFKACLRKS-------PVS---KDVDLEKLAQFT--QGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 64 ~~~~P~~~~R~~il~~~l~~~-------~~~---~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
.|.+++.+.-..|++.++... ... ++--+..|+... .-|-.+.|+.+++.-....+.+.+
T Consensus 762 vF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 762 VFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888542 111 222244455432 234467888888887777666554
No 159
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=86.44 E-value=1.7 Score=36.25 Aligned_cols=93 Identities=17% Similarity=0.244 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhCCC-----C-----------CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 17 ADRIPNQLLTEMDGLS-----A-----------KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~-----~-----------~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
.+..-..|+..|++.. + -.+.-+|+||++...|.+.++. ||.....+..=+.++-..|++..
T Consensus 114 nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 114 NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRS 191 (233)
T ss_dssp -HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHC
T ss_pred cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHH
Confidence 3344556777787651 1 1346899999999999999999 99999999988999999999988
Q ss_pred hcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 039253 81 LRKSPVS-KDVDLEKLAQFTQGFSGADITEICQ 112 (199)
Q Consensus 81 l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~ 112 (199)
...+.+. .+.....||.++.| +++--..+++
T Consensus 192 a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 192 ARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp CHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred HHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 8777665 34457788998887 4544444433
No 160
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=5.2 Score=35.51 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=66.2
Q ss_pred CCCEEEEEeeCCC---CCCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhcCC---CCCCcccHHHHHh---hCCCCC
Q 039253 34 KKTIFVIGVTNRP---DIIDPALLRPGRLD-QLIYIPLPVEKSRLQIFKACLRKS---PVSKDVDLEKLAQ---FTQGFS 103 (199)
Q Consensus 34 ~~~VvvI~aTN~~---~~lD~al~R~gRfd-~~i~~~~P~~~~R~~il~~~l~~~---~~~~~~~l~~la~---~t~G~s 103 (199)
..+|.+|+.+|.. +.+|+-+.+ +|. .+|.|++=+.+|-..|++...... ..-.+--++.+|. ...| .
T Consensus 154 ~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-D 230 (366)
T COG1474 154 KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-D 230 (366)
T ss_pred ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-c
Confidence 4568999999985 588999987 554 346777779999999998887532 1112223444443 3333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 104 GADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 104 gaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
.+---.+|+.|+..|-++.. ..++.++...|...+.+...
T Consensus 231 AR~aidilr~A~eiAe~~~~-------------------~~v~~~~v~~a~~~~~~~~~ 270 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGS-------------------RKVSEDHVREAQEEIERDVL 270 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCC-------------------CCcCHHHHHHHHHHhhHHHH
Confidence 33444567777777665542 44566666666554444433
No 161
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=85.45 E-value=1.8 Score=39.64 Aligned_cols=30 Identities=37% Similarity=0.635 Sum_probs=25.0
Q ss_pred CCEEEEEeeCCCC----CCCccccCCCccceEEEecC
Q 039253 35 KTIFVIGVTNRPD----IIDPALLRPGRLDQLIYIPL 67 (199)
Q Consensus 35 ~~VvvI~aTN~~~----~lD~al~R~gRfd~~i~~~~ 67 (199)
.++.||+|+|..+ .+|.|++| ||.. |++.+
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~p 357 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIEP 357 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHh--hhhe-EEecC
Confidence 5799999999988 89999999 9955 55543
No 162
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.82 E-value=2.1 Score=30.70 Aligned_cols=45 Identities=44% Similarity=0.617 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCC----CCCEEEEEeeCCCC--CCCccccCCCccceEEEec
Q 039253 20 IPNQLLTEMDGLSA----KKTIFVIGVTNRPD--IIDPALLRPGRLDQLIYIP 66 (199)
Q Consensus 20 ~~~~lL~~ld~~~~----~~~VvvI~aTN~~~--~lD~al~R~gRfd~~i~~~ 66 (199)
....++..|..+.. ..++.+|++||... .+++.+.. ||+.+++++
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 100 AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 44566666766543 36788999999877 78888888 999888776
No 163
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=84.43 E-value=5.4 Score=35.71 Aligned_cols=98 Identities=22% Similarity=0.196 Sum_probs=66.2
Q ss_pred EEEEeeCC------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCH
Q 039253 38 FVIGVTNR------------PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSG 104 (199)
Q Consensus 38 vvI~aTN~------------~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sg 104 (199)
++|+|||+ |.-||..++. |+- .|...+=+.++-++|++.-.+...+. ++-.++.|+....--|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 67788884 7778888887 652 22222337889999999888765444 45567788887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 105 ADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 105 aDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
+---+|+.-|...|.++.. ..|..+|++.|-.-+
T Consensus 399 RYa~qLL~pa~iiA~~rg~-------------------~~V~~~dVe~a~~lF 432 (450)
T COG1224 399 RYAVQLLTPASIIAKRRGS-------------------KRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHhccHHHHHHHHhCC-------------------CeeehhHHHHHHHHH
Confidence 6666777777666666542 457777777776554
No 164
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=84.32 E-value=1.7 Score=42.02 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=36.8
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++|++|+|+|..+.||++++. |+. .|+++==..++...|-+.||-
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 579999999999999999998 874 455544466888999988883
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.99 E-value=11 Score=37.03 Aligned_cols=105 Identities=20% Similarity=0.208 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhCCC---------CCCCEEEEEeeCCCCC-------------------------------------CC
Q 039253 17 ADRIPNQLLTEMDGLS---------AKKTIFVIGVTNRPDI-------------------------------------ID 50 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~~~-------------------------------------lD 50 (199)
...+.+.|++.|+.-. .-.++++|+|||.... +.
T Consensus 624 ~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 703 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFR 703 (821)
T ss_pred CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcC
Confidence 3457888998888521 1246899999996421 23
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhcCC-------C--CC-CcccHHHHHhh--CCCCCHHHHHHHHHHHHHHH
Q 039253 51 PALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS-------P--VS-KDVDLEKLAQF--TQGFSGADITEICQRACKDA 118 (199)
Q Consensus 51 ~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~-------~--~~-~~~~l~~la~~--t~G~sgaDI~~lv~~A~~~a 118 (199)
|.|+. |+|.+|.|.+.+.++-..|++..+... . +. .+--...|++. ...|-++-|+.+++.-...+
T Consensus 704 pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~ 781 (821)
T CHL00095 704 PEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDP 781 (821)
T ss_pred HHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 56777 999999999999999999998887532 1 11 22235567765 23566788888888777666
Q ss_pred HHHHH
Q 039253 119 TREEI 123 (199)
Q Consensus 119 ~~~~~ 123 (199)
+.+.+
T Consensus 782 l~~~~ 786 (821)
T CHL00095 782 LAEEV 786 (821)
T ss_pred HHHHH
Confidence 66554
No 166
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=83.35 E-value=2.3 Score=33.00 Aligned_cols=39 Identities=26% Similarity=0.455 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCcc
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRL 59 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRf 59 (199)
.....|.||..|+ ++..++++|.+|+.++.|-+.+++ |.
T Consensus 115 ~~~a~NaLLK~LE--epp~~~~fiL~t~~~~~il~TI~S--Rc 153 (162)
T PF13177_consen 115 TEEAQNALLKTLE--EPPENTYFILITNNPSKILPTIRS--RC 153 (162)
T ss_dssp -HHHHHHHHHHHH--STTTTEEEEEEES-GGGS-HHHHT--TS
T ss_pred hHHHHHHHHHHhc--CCCCCEEEEEEECChHHChHHHHh--hc
Confidence 4567899999999 455788999999999999999998 76
No 167
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=82.60 E-value=6.5 Score=33.37 Aligned_cols=67 Identities=10% Similarity=0.162 Sum_probs=51.9
Q ss_pred HHHHHHHHhCC-C-CCCCEEEEEeeCCCCCCCcccc-C-------------------CCccceEEEecCCCHHHHHHHHH
Q 039253 21 PNQLLTEMDGL-S-AKKTIFVIGVTNRPDIIDPALL-R-------------------PGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 21 ~~~lL~~ld~~-~-~~~~VvvI~aTN~~~~lD~al~-R-------------------~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
-..|...|||= . ...+|++-+|+|+-..|+.-+. + +.||.-.+.|..|+.++-..|+.
T Consensus 157 yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~ 236 (287)
T COG2607 157 YKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVD 236 (287)
T ss_pred HHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHH
Confidence 34555666654 2 2357999999999888885433 1 34899999999999999999999
Q ss_pred HhhcCCCCC
Q 039253 79 ACLRKSPVS 87 (199)
Q Consensus 79 ~~l~~~~~~ 87 (199)
++.+++.+.
T Consensus 237 ~~a~~~~l~ 245 (287)
T COG2607 237 HYAKHFGLD 245 (287)
T ss_pred HHHHHcCCC
Confidence 999988776
No 168
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=81.81 E-value=4.7 Score=38.55 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=67.5
Q ss_pred CEEEEEeeCC-----CCCCCccccCCCccceEEEe--cCC-CHHHHHHHHHHhhcCC------CCCCcccHHHHH----h
Q 039253 36 TIFVIGVTNR-----PDIIDPALLRPGRLDQLIYI--PLP-VEKSRLQIFKACLRKS------PVSKDVDLEKLA----Q 97 (199)
Q Consensus 36 ~VvvI~aTN~-----~~~lD~al~R~gRfd~~i~~--~~P-~~~~R~~il~~~l~~~------~~~~~~~l~~la----~ 97 (199)
...+|++.|+ ...+|+.++. -|....++ ++| +.+.|..+|+.+.+.. +.-..--+.+|. +
T Consensus 276 d~klI~~Gn~~~l~~l~~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R 353 (647)
T COG1067 276 DLKLILAGNREDLEDLHEPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAAR 353 (647)
T ss_pred ceEEEeeCCHHHHHhhcccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 4677777775 3445555555 45444555 467 7799999999988643 221112233322 2
Q ss_pred hC-----CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 98 FT-----QGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 98 ~t-----~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
.+ --.+++||.++++.|...|..+.. ..++.+|++.|++..++.
T Consensus 354 ~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~-------------------~~I~ae~Ve~a~~~~~~~ 402 (647)
T COG1067 354 RAGDQNKLTLRLRDLGNLVREAGDIAVSEGR-------------------KLITAEDVEEALQKRELR 402 (647)
T ss_pred hccccceeccCHHHHHHHHHHhhHHHhcCCc-------------------ccCcHHHHHHHHHhhhhH
Confidence 22 126899999999998887766532 458999999999986654
No 169
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=79.86 E-value=3.7 Score=35.86 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
..-+.|...|+.+. ..+.+|..||.++.|+.-+.+ |..+ +.|+....+.....|+....+..+. ++-.++.|++
T Consensus 144 daq~aLrr~mE~~s--~~trFiLIcnylsrii~pi~S--RC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 144 DAQAALRRTMEDFS--RTTRFILICNYLSRIIRPLVS--RCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK 218 (346)
T ss_pred HHHHHHHHHHhccc--cceEEEEEcCChhhCChHHHh--hHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34567888888743 356889999999999999998 8754 4555555666666677777665554 3445777888
Q ss_pred hCCCCCHHHHHHHH
Q 039253 98 FTQGFSGADITEIC 111 (199)
Q Consensus 98 ~t~G~sgaDI~~lv 111 (199)
.++ +||+..+
T Consensus 219 ~S~----GdLR~Ai 228 (346)
T KOG0989|consen 219 ISD----GDLRRAI 228 (346)
T ss_pred HcC----CcHHHHH
Confidence 554 4555443
No 170
>PRK14700 recombination factor protein RarA; Provisional
Probab=79.60 E-value=4.9 Score=34.79 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=51.1
Q ss_pred CCCEEEEEeeCC--CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC------CCC-CcccHHHHHhhCCCCCH
Q 039253 34 KKTIFVIGVTNR--PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS------PVS-KDVDLEKLAQFTQGFSG 104 (199)
Q Consensus 34 ~~~VvvI~aTN~--~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~------~~~-~~~~l~~la~~t~G~sg 104 (199)
+..|++|+||.- ...|.+|+++ |. +.+.+...+.++-..++++-+... .+. ++.-+..|+. +++
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~----~a~ 78 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHN----YNE 78 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHH----hcC
Confidence 456788887754 6789999999 88 789999999999999999988641 111 2333556666 444
Q ss_pred HHHHHHHH
Q 039253 105 ADITEICQ 112 (199)
Q Consensus 105 aDI~~lv~ 112 (199)
+|.+..+.
T Consensus 79 GDaR~aLN 86 (300)
T PRK14700 79 GDCRKILN 86 (300)
T ss_pred CHHHHHHH
Confidence 56655544
No 171
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=79.14 E-value=20 Score=31.15 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHH
Q 039253 35 KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 35 ~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~ 113 (199)
.+.-+|+||.+.-.|..-++. ||.....+..=+.++-.+|++.....+.+. .+.....+|+++.| |++=-..++++
T Consensus 150 ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrR 226 (332)
T COG2255 150 PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRR 226 (332)
T ss_pred CCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHH
Confidence 356799999999999999999 999999999999999999999988777665 34456778888887 44433344443
Q ss_pred H
Q 039253 114 A 114 (199)
Q Consensus 114 A 114 (199)
.
T Consensus 227 V 227 (332)
T COG2255 227 V 227 (332)
T ss_pred H
Confidence 3
No 172
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=78.49 E-value=6.4 Score=33.98 Aligned_cols=58 Identities=17% Similarity=0.309 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
.....|.||..|+. +...+++|..|+.++.|-+.+++ |. ..++|..|+.++-...|..
T Consensus 103 ~~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 103 SNSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred CHHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 34567889999995 45567778888899999999987 65 4588888888877766654
No 173
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=77.50 E-value=6.3 Score=33.47 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCC
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLP 68 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P 68 (199)
....|.||+.|+ ++..++++|..|+.++.|.|.+++ |... +.|+.+
T Consensus 102 ~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~~~~ 147 (261)
T PRK05818 102 KQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCVQ-YVVLSK 147 (261)
T ss_pred HHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--heee-eecCCh
Confidence 357899999999 467788999999999999999999 8644 455555
No 174
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=77.49 E-value=3.4 Score=36.04 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
.....+.|++.|+... ..+.+|.+|++++.+.+.+++ |. ..+.|+.|+.++-.+.|..
T Consensus 126 d~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 126 NLQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CHHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 3456788888888653 346677799999999999887 76 5678888999887777754
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=77.21 E-value=18 Score=35.42 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHhCC---CCC------CCEEEEEeeCCCC----------------------------CCCccccCCCcc
Q 039253 17 ADRIPNQLLTEMDGL---SAK------KTIFVIGVTNRPD----------------------------IIDPALLRPGRL 59 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~---~~~------~~VvvI~aTN~~~----------------------------~lD~al~R~gRf 59 (199)
.-.+.|.||+-||.= .+. .+.++|+|||--. ...|.|+. |+
T Consensus 606 HpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Ri 683 (786)
T COG0542 606 HPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RI 683 (786)
T ss_pred CHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hc
Confidence 346999999999953 111 3589999999421 23567777 99
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 60 DQLIYIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQFT--QGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 60 d~~i~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
|..|.|...+.+.-.+|+...+... .+. ++.-...|++.. +.|-++-|+.+++.-....+.+.+
T Consensus 684 d~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 684 DEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred ccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888532 111 222345566554 357777787777776655555543
No 176
>PHA02244 ATPase-like protein
Probab=76.91 E-value=15 Score=32.99 Aligned_cols=34 Identities=26% Similarity=0.237 Sum_probs=28.4
Q ss_pred CCCEEEEEeeCCC-----------CCCCccccCCCccceEEEecCCCH
Q 039253 34 KKTIFVIGVTNRP-----------DIIDPALLRPGRLDQLIYIPLPVE 70 (199)
Q Consensus 34 ~~~VvvI~aTN~~-----------~~lD~al~R~gRfd~~i~~~~P~~ 70 (199)
..+..+|+|+|.+ ..+++|++. ||- .|+|..|..
T Consensus 219 h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~ 263 (383)
T PHA02244 219 HEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEK 263 (383)
T ss_pred CCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcH
Confidence 3568999999973 688999999 995 699999984
No 177
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=76.42 E-value=2 Score=31.91 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=19.1
Q ss_pred CEEEEEeeCCCC----CCCccccCCCcc
Q 039253 36 TIFVIGVTNRPD----IIDPALLRPGRL 59 (199)
Q Consensus 36 ~VvvI~aTN~~~----~lD~al~R~gRf 59 (199)
+..+|+|+|... .+++|+++ ||
T Consensus 114 ~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 114 NFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 389999999998 99999999 97
No 178
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=75.66 E-value=24 Score=33.40 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHhCC---------C--CCCCEEEEEeeCCC---CCCCccccCCCccceEEEecCCCHHH
Q 039253 17 ADRIPNQLLTEMDGL---------S--AKKTIFVIGVTNRP---DIIDPALLRPGRLDQLIYIPLPVEKS 72 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~---------~--~~~~VvvI~aTN~~---~~lD~al~R~gRfd~~i~~~~P~~~~ 72 (199)
..++++.|++-|+.= . -..+.++|++-|.. ..|+++++- ||+.++.++.|...+
T Consensus 106 ~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 106 EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 567899999999741 0 01346677763322 459999999 999999999987653
No 179
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=75.56 E-value=7.5 Score=33.71 Aligned_cols=98 Identities=15% Similarity=0.283 Sum_probs=58.9
Q ss_pred HHHHHHhCCCCCC--CEEEEEeeCC--CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC--Cccc----H
Q 039253 23 QLLTEMDGLSAKK--TIFVIGVTNR--PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS--KDVD----L 92 (199)
Q Consensus 23 ~lL~~ld~~~~~~--~VvvI~aTN~--~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~--~~~~----l 92 (199)
++|+.|..+...- ++|.++|--- .=.-|+.+-+ ||+....=+-...++...++..+-..+++. +... .
T Consensus 167 ~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la 244 (302)
T PF05621_consen 167 EFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELA 244 (302)
T ss_pred HHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHH
Confidence 3444444443333 4566665433 3344677777 997544322223456667888887777665 2232 2
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 93 EKLAQFTQGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 93 ~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
..|-.+|+|..| +|..++..|+..|++...
T Consensus 245 ~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 245 RRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred HHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 455668888765 688889999998887663
No 180
>PRK09862 putative ATP-dependent protease; Provisional
Probab=74.98 E-value=36 Score=31.65 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC---------------------CCCccccCCCccceEEE
Q 039253 17 ADRIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD---------------------IIDPALLRPGRLDQLIY 64 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~---------------------~lD~al~R~gRfd~~i~ 64 (199)
...+...|++.|+.=. -..++.+|+|+|... .|..+++. |||-++.
T Consensus 307 ~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~ 384 (506)
T PRK09862 307 ERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLE 384 (506)
T ss_pred CHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEE
Confidence 3456777777774321 123579999999742 47789999 9999999
Q ss_pred ecCCCHH
Q 039253 65 IPLPVEK 71 (199)
Q Consensus 65 ~~~P~~~ 71 (199)
++.|+.+
T Consensus 385 v~~~~~~ 391 (506)
T PRK09862 385 IPLPPPG 391 (506)
T ss_pred eCCCCHH
Confidence 9998654
No 181
>PRK13531 regulatory ATPase RavA; Provisional
Probab=74.61 E-value=42 Score=31.23 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhC-C-------CCCCCEEEEEeeCCCCC---CCccccCCCccceEEEecCCC-HHHHHHHHHHh
Q 039253 17 ADRIPNQLLTEMDG-L-------SAKKTIFVIGVTNRPDI---IDPALLRPGRLDQLIYIPLPV-EKSRLQIFKAC 80 (199)
Q Consensus 17 ~~r~~~~lL~~ld~-~-------~~~~~VvvI~aTN~~~~---lD~al~R~gRfd~~i~~~~P~-~~~R~~il~~~ 80 (199)
..++-+.||..|.. . ..-+..++++|||.... ..+|+.- ||-.++.+++|+ .++-.+|+...
T Consensus 120 sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 120 GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 45678889988842 2 01122356666674221 2348999 999999999996 46667777664
No 182
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.83 E-value=9.1 Score=33.21 Aligned_cols=63 Identities=19% Similarity=0.251 Sum_probs=50.8
Q ss_pred CEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCC
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQG 101 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G 101 (199)
++-+|..+|..+.|=+++++ |. ..|.+|.|+.++-..++...+.+..+. +.--+.++|+.+.|
T Consensus 157 ~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 45677889999999999997 64 467889999999999999999887665 45557778887654
No 183
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=73.64 E-value=11 Score=34.23 Aligned_cols=66 Identities=23% Similarity=0.324 Sum_probs=51.6
Q ss_pred hhhHHHHHHHHHHhC---------CC--CCCCEEEEEeeCC-CCCCCccccCCCccceEEEecCC-CHHHHHHHHHHhhc
Q 039253 16 AADRIPNQLLTEMDG---------LS--AKKTIFVIGVTNR-PDIIDPALLRPGRLDQLIYIPLP-VEKSRLQIFKACLR 82 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~---------~~--~~~~VvvI~aTN~-~~~lD~al~R~gRfd~~i~~~~P-~~~~R~~il~~~l~ 82 (199)
-.+++++.||..+.. ++ ..-++++|+|+|- -..|=|-|+- ||...|.+..| +.++|.+|.+.-+.
T Consensus 156 L~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 156 LDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHH
Confidence 356889999887764 11 2246899999996 5678888888 99999999998 56899999988775
Q ss_pred C
Q 039253 83 K 83 (199)
Q Consensus 83 ~ 83 (199)
-
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 3
No 184
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=73.35 E-value=29 Score=30.64 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=57.6
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 039253 46 PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIE 124 (199)
Q Consensus 46 ~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~ 124 (199)
|.-||-.|+. |.-. |...+-+.++-+.||+..+....+. .+..++.|......-|-+---+|+..|.+.|.++..
T Consensus 339 phGiP~D~lD--R~lI-I~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~- 414 (454)
T KOG2680|consen 339 PHGIPIDLLD--RMLI-ISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG- 414 (454)
T ss_pred CCCCcHHHhh--hhhe-eecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC-
Confidence 6778888876 6522 2222338889999999888765443 222345555555555556666777777777777653
Q ss_pred HhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 125 NDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
..+..+|+..+-.-+-
T Consensus 415 ------------------~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 ------------------KVVEVDDIERVYRLFL 430 (454)
T ss_pred ------------------ceeehhHHHHHHHHHh
Confidence 4566777777766553
No 185
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=71.40 E-value=18 Score=30.71 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=49.4
Q ss_pred ccceEEEecCCCHHHHHHHHHHhhcCCCC----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHH
Q 039253 58 RLDQLIYIPLPVEKSRLQIFKACLRKSPV----SKDVDLEKLAQFTQGFSGADITEICQRACKDATREE 122 (199)
Q Consensus 58 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~----~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~ 122 (199)
|++.+|++++-+.++-..++++.++.-.. -++-.+..+...+.| .|.-|.++|..|+..|....
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~ 257 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAG 257 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcC
Confidence 78888888888999999999999976522 244457778888888 67788888888877776543
No 186
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.74 E-value=7.1 Score=30.82 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCC------CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC-C-CCc
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRP------DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP-V-SKD 89 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~------~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-~-~~~ 89 (199)
..+...|.+.++......++.+|.+.... ..-...+.. |+.. +++++-+.++-.++++..+.... + .++
T Consensus 138 ~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~ 214 (234)
T PF01637_consen 138 KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSD 214 (234)
T ss_dssp HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------H
T ss_pred HHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCH
Confidence 46777888888875555665555554432 122233444 8888 99999999999999999876651 1 256
Q ss_pred ccHHHHHhhCCCCCH
Q 039253 90 VDLEKLAQFTQGFSG 104 (199)
Q Consensus 90 ~~l~~la~~t~G~sg 104 (199)
.++..+...|.|..+
T Consensus 215 ~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 215 EDIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHhCCCHH
Confidence 678888888887643
No 187
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=68.19 E-value=12 Score=35.91 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=50.2
Q ss_pred CEEEEEeeCCC--CCCCccccCCCccc---eEEEec--CC-CHHHHHHHHHHhhcCCC---CCCccc---HHHHHh----
Q 039253 36 TIFVIGVTNRP--DIIDPALLRPGRLD---QLIYIP--LP-VEKSRLQIFKACLRKSP---VSKDVD---LEKLAQ---- 97 (199)
Q Consensus 36 ~VvvI~aTN~~--~~lD~al~R~gRfd---~~i~~~--~P-~~~~R~~il~~~l~~~~---~~~~~~---l~~la~---- 97 (199)
++.||+++|.. ..+||+|.. ||. ..++|. .| +.+.+..+++.+.+... ....++ +..|.+
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 46888888884 778999998 986 566655 23 35666666654443221 111222 222222
Q ss_pred hC---CC--CCHHHHHHHHHHHHHHHHHHH
Q 039253 98 FT---QG--FSGADITEICQRACKDATREE 122 (199)
Q Consensus 98 ~t---~G--~sgaDI~~lv~~A~~~a~~~~ 122 (199)
++ .- +.-++|..++++|...|..+.
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 11 11 346888899998877765544
No 188
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=68.15 E-value=13 Score=31.22 Aligned_cols=56 Identities=25% Similarity=0.327 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
....|.|+..|+ .+..+..+|.+||.++.|-+.+++ |. ..+.|++|+...+....+
T Consensus 123 ~~A~nallk~lE--ep~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 123 EDAANALLKTLE--EPPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHHHHHHHHhc--cCCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 345678888887 345667899999999999999987 65 456776666655555554
No 189
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=60.94 E-value=88 Score=26.03 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCc---cccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDP---ALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~---al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
..+.|+..+.... +.+++|..++.++.-.. .+-.- .-...+.+..|+..+...+++..+...... +...+..|
T Consensus 63 ~~~~L~~~l~~~~--~~~~~i~~~~~~~~~~~~~k~~~~~-~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l 139 (302)
T TIGR01128 63 GLKALEEYLANPP--PDTLLLIEAPKLDKRKKLTKWLKAL-KNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLL 139 (302)
T ss_pred HHHHHHHHHhcCC--CCEEEEEecCCCCHhHHHHHHHHHh-cCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4677888887642 33455555553322111 11110 123578888999999999999999877554 34446666
Q ss_pred HhhCC
Q 039253 96 AQFTQ 100 (199)
Q Consensus 96 a~~t~ 100 (199)
+..+.
T Consensus 140 ~~~~~ 144 (302)
T TIGR01128 140 AELVE 144 (302)
T ss_pred HHHhC
Confidence 76554
No 190
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=59.86 E-value=13 Score=33.08 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHHhCC----CCC-----CCEEEEEeeCCC-------CCCCccccCCCccceEEEecCC-CHHHHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGL----SAK-----KTIFVIGVTNRP-------DIIDPALLRPGRLDQLIYIPLP-VEKSRLQIFKA 79 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~----~~~-----~~VvvI~aTN~~-------~~lD~al~R~gRfd~~i~~~~P-~~~~R~~il~~ 79 (199)
...+.+.||+.++.- .+. -..+||++||.. ....+||++ |+. .|.++.| +..+-.+|.+.
T Consensus 249 ~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k 325 (361)
T smart00763 249 DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEK 325 (361)
T ss_pred CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHH
Confidence 346788888888742 111 136889999987 367899999 998 8999998 66888889988
Q ss_pred hhcCC
Q 039253 80 CLRKS 84 (199)
Q Consensus 80 ~l~~~ 84 (199)
.+...
T Consensus 326 ~~~~s 330 (361)
T smart00763 326 LLRNS 330 (361)
T ss_pred HhccC
Confidence 88643
No 191
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=58.77 E-value=37 Score=28.96 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCC---CCCccccCCCccceEEEecCC---CHHHHHHHHHHhhcCCCCC-Ccc
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPD---IIDPALLRPGRLDQLIYIPLP---VEKSRLQIFKACLRKSPVS-KDV 90 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~---~lD~al~R~gRfd~~i~~~~P---~~~~R~~il~~~l~~~~~~-~~~ 90 (199)
+...+.|...+++..+ +.++|+.+++.++ .+...+.. +.....+..| +.++...+++..+++.... +..
T Consensus 78 ~~~~~~L~~~l~~~~~-~~~li~~~~~~~d~r~k~~k~l~k---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~i~~~ 153 (326)
T PRK07452 78 EELLAELERTLPLIPE-NTHLLLTNTKKPDGRLKSTKLLQK---LAEEKEFSLIPPWDTEGLKQLVERTAQELGVKLTPE 153 (326)
T ss_pred HHHHHHHHHHHcCCCC-CcEEEEEeCCCcchHHHHHHHHHH---ceeEEEecCCCcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 3456678888876533 4455554444332 12222332 3446666554 4455677777777766554 333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 91 DLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 91 ~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
.+..|+..+ |.|+..+.++.
T Consensus 154 a~~~L~~~~----g~dl~~l~~El 173 (326)
T PRK07452 154 AAELLAEAV----GNDSRRLYNEL 173 (326)
T ss_pred HHHHHHHHh----CccHHHHHHHH
Confidence 456666644 34554444443
No 192
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=58.33 E-value=24 Score=31.96 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=34.8
Q ss_pred CCCEEEEEeeCC--CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 34 KKTIFVIGVTNR--PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 34 ~~~VvvI~aTN~--~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+..|++|+||.- ...|.+|+++ |. .++++...+.++-..+++.-+
T Consensus 130 ~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 130 NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHH
Confidence 456888887743 6789999998 76 467778889999999988833
No 193
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=57.57 E-value=17 Score=33.09 Aligned_cols=72 Identities=18% Similarity=0.324 Sum_probs=48.4
Q ss_pred CCCEEEEEeeCC-CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCC-C--CCHH-HHH
Q 039253 34 KKTIFVIGVTNR-PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQ-G--FSGA-DIT 108 (199)
Q Consensus 34 ~~~VvvI~aTN~-~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~-G--~sga-DI~ 108 (199)
+++||+++|+|| |++|-..-+. +...+| ...+|+..+....+++.+|+...+.-.. + |.+. |..
T Consensus 222 ~~GvVlvATSNR~P~dLYknGlQ-----R~~F~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~ 290 (467)
T KOG2383|consen 222 KNGVVLVATSNRAPEDLYKNGLQ-----RENFIP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVE 290 (467)
T ss_pred hCCeEEEEeCCCChHHHhhcchh-----hhhhhh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHH
Confidence 358999999998 7776664443 233333 3578888888888888999985544322 2 3444 888
Q ss_pred HHHHHHHH
Q 039253 109 EICQRACK 116 (199)
Q Consensus 109 ~lv~~A~~ 116 (199)
.++++-..
T Consensus 291 ~~l~~~fk 298 (467)
T KOG2383|consen 291 TVLKEWFK 298 (467)
T ss_pred HHHHHHHH
Confidence 88876543
No 194
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=57.10 E-value=13 Score=32.05 Aligned_cols=45 Identities=18% Similarity=0.284 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecC
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~ 67 (199)
....|.||+.|+ ++..++++|..|+.++.|.|.+++ |... +.|+.
T Consensus 109 ~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq~-~~~~~ 153 (290)
T PRK05917 109 LDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSLS-IHIPM 153 (290)
T ss_pred HHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cceE-EEccc
Confidence 356789999999 466778999999999999999998 7643 34443
No 195
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=54.66 E-value=1.2e+02 Score=28.09 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHhCCC----C-------CCCEEEEEeeCCC-----C------------------CCCccccCCCccceEE
Q 039253 18 DRIPNQLLTEMDGLS----A-------KKTIFVIGVTNRP-----D------------------IIDPALLRPGRLDQLI 63 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~----~-------~~~VvvI~aTN~~-----~------------------~lD~al~R~gRfd~~i 63 (199)
..+...|++.|+.-. . ..++.+|+++|.- . .|...++. |||..+
T Consensus 309 ~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~ 386 (499)
T TIGR00368 309 RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSV 386 (499)
T ss_pred HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEE
Confidence 456677777775421 0 1358899999952 1 47778888 888888
Q ss_pred EecCCCHH
Q 039253 64 YIPLPVEK 71 (199)
Q Consensus 64 ~~~~P~~~ 71 (199)
.++.++..
T Consensus 387 ~~~~~~~~ 394 (499)
T TIGR00368 387 EVPLLPPE 394 (499)
T ss_pred EEcCCCHH
Confidence 88876543
No 196
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=53.95 E-value=91 Score=26.49 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=33.3
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 60 DQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 60 d~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
...+.++.|+..+....++..+...... ....+..|++.+. .|+..+..+.
T Consensus 138 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~----~d~~~l~~El 189 (340)
T PRK05574 138 AVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVE----GNLLALAQEL 189 (340)
T ss_pred ceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC----chHHHHHHHH
Confidence 4678888899999999999999876554 2334555666443 3444444433
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=52.44 E-value=47 Score=32.57 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=55.6
Q ss_pred EEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 039253 38 FVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 38 vvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~ 117 (199)
=||+.||. ..-||++----|-..|+|..|....-.+=|+..+...... ++...|+..++ ++..||+..+..-...
T Consensus 440 PIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfL 514 (877)
T KOG1969|consen 440 PIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFL 514 (877)
T ss_pred CEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHH
Confidence 46778884 5568887433799999999998877777777777554433 45555665555 7778999988877666
Q ss_pred HHHH
Q 039253 118 ATRE 121 (199)
Q Consensus 118 a~~~ 121 (199)
+...
T Consensus 515 a~~~ 518 (877)
T KOG1969|consen 515 ASNV 518 (877)
T ss_pred HHhc
Confidence 6543
No 198
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=50.83 E-value=46 Score=30.04 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=51.4
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHH----hhcC-------CCCC---CcccHHHHHhh--CCCCCHHHHHHHHH
Q 039253 49 IDPALLRPGRLDQLIYIPLPVEKSRLQIFKA----CLRK-------SPVS---KDVDLEKLAQF--TQGFSGADITEICQ 112 (199)
Q Consensus 49 lD~al~R~gRfd~~i~~~~P~~~~R~~il~~----~l~~-------~~~~---~~~~l~~la~~--t~G~sgaDI~~lv~ 112 (199)
+.|+|+- |+|..+.|...+.+....|+.. .++. ..+. .+--+..|++. ..++-.+-|+.+++
T Consensus 295 f~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie 372 (412)
T PRK05342 295 LIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILE 372 (412)
T ss_pred hhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 3566666 9999999999999999999973 3321 1111 23346677775 45788889999999
Q ss_pred HHHHHHHHHH
Q 039253 113 RACKDATREE 122 (199)
Q Consensus 113 ~A~~~a~~~~ 122 (199)
+.+...+.+.
T Consensus 373 ~~l~~~~~~~ 382 (412)
T PRK05342 373 EILLDVMFEL 382 (412)
T ss_pred HHhHHHHHhc
Confidence 8877777655
No 199
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.51 E-value=1.7e+02 Score=27.32 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=77.9
Q ss_pred CCCEEEEEeeCCCCCCCccccC----CCccceEEEecCCCHHHHHHHHHHhhcCCCCCC--cccHHHHHhhCCCCCHHHH
Q 039253 34 KKTIFVIGVTNRPDIIDPALLR----PGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSK--DVDLEKLAQFTQGFSGADI 107 (199)
Q Consensus 34 ~~~VvvI~aTN~~~~lD~al~R----~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgaDI 107 (199)
..++++|+.+|..+.-|..+.| -+--...+.|++=+.++-.+||+.-+...+... ...+.-+|+...|.|| |+
T Consensus 287 ~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-Dl 365 (529)
T KOG2227|consen 287 NSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DL 365 (529)
T ss_pred cceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hH
Confidence 4568999999999888877764 233457788887799999999999998775542 2346778888888887 55
Q ss_pred HHH---HHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 108 TEI---CQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 108 ~~l---v~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
+.+ |+.|.-.+-++..... .........+.....|..++...++..+--+.+
T Consensus 366 RkaLdv~R~aiEI~E~e~r~~~---~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~ 420 (529)
T KOG2227|consen 366 RKALDVCRRAIEIAEIEKRKIL---DDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPS 420 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc---ccCCCCCCCcccccccchHHHHHHhhhhccChh
Confidence 443 4444333322221110 011112222223355678888888877654443
No 200
>PF12703 plasmid_Toxin: Toxin of toxin-antitoxin type 1 system; InterPro: IPR024640 This family is the toxin of a type 1 toxin-antitoxin system which is found in a relatively widespread range of bacterial species. The species distribution suggests frequent horizontal gene transfer. In a type 1 system, as characterised for the plasmid-encoded E coli hok/sok system, the toxin-encoding stable mRNA encodes a protein which rapidly leads to cell death unless the translation is suppressed by a short-lived small RNA. The plasmid-encoded module prevents the growth of plasmid-free offspring, thus ensuring the persistence of the plasmid in the population. Plasmid-free cells arising after cell-division will be killed because the stable mRNA toxin is present while the comparably unstable anti-toxin is rapidly degraded. Where the system is transcribed chromosomally, the mechanism is poorly understood [].
Probab=44.95 E-value=72 Score=21.54 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=14.1
Q ss_pred ccccHHHHHHHHHhccc
Q 039253 143 AEIKAEHFEESMKYACK 159 (199)
Q Consensus 143 ~~it~~df~~Al~~~~P 159 (199)
..-|.+||.+|+..++-
T Consensus 55 grAT~~DF~eAm~~Irq 71 (74)
T PF12703_consen 55 GRATQEDFREAMSAIRQ 71 (74)
T ss_pred ccCcHHHHHHHHHHHHH
Confidence 45799999999998763
No 201
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=44.28 E-value=36 Score=22.62 Aligned_cols=13 Identities=0% Similarity=0.440 Sum_probs=9.6
Q ss_pred ccccHHHHHHHHH
Q 039253 143 AEIKAEHFEESMK 155 (199)
Q Consensus 143 ~~it~~df~~Al~ 155 (199)
..+|.+|+..||+
T Consensus 54 ~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 54 TKLTTDDINSALR 66 (66)
T ss_dssp SSB-HHHHHHHH-
T ss_pred CCCCHHHHHHHhC
Confidence 5689999999985
No 202
>PF00399 PIR: Yeast PIR protein repeat; InterPro: IPR000420 A number of yeast cell wall glycoproteins are characterised by the presence of tandem repeats of a region of 18 to 19 residues [, ].; GO: 0005199 structural constituent of cell wall, 0005618 cell wall
Probab=43.69 E-value=11 Score=18.62 Aligned_cols=9 Identities=56% Similarity=0.778 Sum_probs=7.9
Q ss_pred CCCCCCCCC
Q 039253 183 PVSSITDGN 191 (199)
Q Consensus 183 ~~~~~~~~~ 191 (199)
|||-|+||.
T Consensus 3 ~vSQI~DGQ 11 (18)
T PF00399_consen 3 AVSQIGDGQ 11 (18)
T ss_pred ccccccCCc
Confidence 799999985
No 203
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=42.41 E-value=80 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCC--------CCCCCEEEEEeeC----CCCCCCccccCCCccceEEEecCCCHHHHHHHH
Q 039253 20 IPNQLLTEMDGL--------SAKKTIFVIGVTN----RPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIF 77 (199)
Q Consensus 20 ~~~~lL~~ld~~--------~~~~~VvvI~aTN----~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il 77 (199)
+-..||..|+|- -....|++|++=. .|++|=|.|+. ||..++++..++.+.-..||
T Consensus 277 VQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~IL 344 (443)
T PRK05201 277 VQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRIL 344 (443)
T ss_pred hhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHh
Confidence 567888888874 1235678887654 47888899987 99999999999999988888
No 204
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=40.37 E-value=82 Score=28.55 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHh----hcC----C---CCC---CcccHHHHHhh--CCCCCHHHHHHHHH
Q 039253 49 IDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC----LRK----S---PVS---KDVDLEKLAQF--TQGFSGADITEICQ 112 (199)
Q Consensus 49 lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~----l~~----~---~~~---~~~~l~~la~~--t~G~sgaDI~~lv~ 112 (199)
+.|+|+- |++..+.|...+.+...+|+... ++. + .+. .+.-+..||+. ...+-++-|+.+++
T Consensus 301 ~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie 378 (413)
T TIGR00382 301 LIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVE 378 (413)
T ss_pred hHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 4467776 99999999999999999998763 221 1 111 23336667775 35677888888888
Q ss_pred HHHHHHHHHH
Q 039253 113 RACKDATREE 122 (199)
Q Consensus 113 ~A~~~a~~~~ 122 (199)
+..+..+.+.
T Consensus 379 ~~l~~~m~e~ 388 (413)
T TIGR00382 379 GLLLDVMFDL 388 (413)
T ss_pred HhhHHHHhhC
Confidence 8777665554
No 205
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=39.73 E-value=1.5e+02 Score=26.04 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 039253 69 VEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIEND 126 (199)
Q Consensus 69 ~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~ 126 (199)
+..+++++|+.+-... -..+.|...|++.-.|=|-++|..+++.-...++++.+...
T Consensus 25 s~rEkr~Llr~Lqar~-g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rvareaiqkv 81 (344)
T PF11035_consen 25 SAREKRQLLRLLQARR-GQPEPDAAELAKELPGRSEAEIRDFLQQLKGRVAREAIQKV 81 (344)
T ss_pred cHHHHHHHHHHHHHhc-CCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4457778887766433 35788999999999999999999999988888888877654
No 206
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=38.88 E-value=1e+02 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.286 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCC--------CCCCEEEEEeeC----CCCCCCccccCCCccceEEEecCCCHHHHHHHH
Q 039253 20 IPNQLLTEMDGLS--------AKKTIFVIGVTN----RPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIF 77 (199)
Q Consensus 20 ~~~~lL~~ld~~~--------~~~~VvvI~aTN----~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il 77 (199)
+-..||..|+|-. ....|++|++-. .|++|=|.|.- ||..++.+..++.+.-..||
T Consensus 275 VQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rIL 342 (441)
T TIGR00390 275 VQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERIL 342 (441)
T ss_pred hhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHh
Confidence 5678888888741 235688887765 47777788886 99999999999999988887
No 207
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=38.16 E-value=1.7e+02 Score=25.12 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=29.3
Q ss_pred eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCC
Q 039253 61 QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQ 100 (199)
Q Consensus 61 ~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~ 100 (199)
..+.+..|+..+...++...++..... ....+..|++.+.
T Consensus 135 ~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g 175 (343)
T PRK06585 135 AAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLG 175 (343)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC
Confidence 456777789999999999999877665 3445666777654
No 208
>PF05729 NACHT: NACHT domain
Probab=37.85 E-value=82 Score=23.13 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=19.5
Q ss_pred eEEEecCCCHHHHHHHHHHhhcC
Q 039253 61 QLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 61 ~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
..+++..-+.+++.++++.+++.
T Consensus 143 ~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 143 QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred cEEEECCCCHHHHHHHHHHHhhc
Confidence 56888888999999999998864
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=37.77 E-value=42 Score=23.30 Aligned_cols=33 Identities=36% Similarity=0.378 Sum_probs=24.3
Q ss_pred CCCEEEEEeeCC-CCCCCccccCCCccceEEEecCC
Q 039253 34 KKTIFVIGVTNR-PDIIDPALLRPGRLDQLIYIPLP 68 (199)
Q Consensus 34 ~~~VvvI~aTN~-~~~lD~al~R~gRfd~~i~~~~P 68 (199)
..+..+|+++|. ....+..+.+ |++.++.+..|
T Consensus 114 ~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 114 EKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred cCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 345688888887 5556666666 99999988765
No 210
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=36.75 E-value=70 Score=28.94 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=52.4
Q ss_pred HHHHHHHhC-----CCC----CCCEEEEEeeCCCCCCCccccC-----CCccceEEEecCCCH--HHHHHHHHHhhc---
Q 039253 22 NQLLTEMDG-----LSA----KKTIFVIGVTNRPDIIDPALLR-----PGRLDQLIYIPLPVE--KSRLQIFKACLR--- 82 (199)
Q Consensus 22 ~~lL~~ld~-----~~~----~~~VvvI~aTN~~~~lD~al~R-----~gRfd~~i~~~~P~~--~~R~~il~~~l~--- 82 (199)
..|+..||. +.+ ..+|-+|+||| .+++.+++. .-|+...|.+|...+ +++..+.+++++
T Consensus 191 ~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~ 268 (403)
T COG1221 191 EKLLRVLEEGEYRRVGGSQPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEA 268 (403)
T ss_pred HHHHHHHHcCceEecCCCCCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHH
Confidence 456677775 222 23588999998 445544443 014555565554422 455566666664
Q ss_pred -CCCCCCcccHHHHHhhCCCC----CHHHHHHHHHHHHHHHHH
Q 039253 83 -KSPVSKDVDLEKLAQFTQGF----SGADITEICQRACKDATR 120 (199)
Q Consensus 83 -~~~~~~~~~l~~la~~t~G~----sgaDI~~lv~~A~~~a~~ 120 (199)
+.......+..+..+.-..| .-++|+++++.++.++-.
T Consensus 269 ~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 269 RRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred HHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 33333222222222222223 558999999998877743
No 211
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.72 E-value=2.2e+02 Score=22.67 Aligned_cols=86 Identities=12% Similarity=0.194 Sum_probs=46.7
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHH--HHHHHHHHHHHHHHHHHHHhHHhh-------cCCCCcchhhcc
Q 039253 72 SRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD--ITEICQRACKDATREEIENDIRRR-------KGKQPEAIEDEV 142 (199)
Q Consensus 72 ~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaD--I~~lv~~A~~~a~~~~~~~~~~~~-------~~~~~~~~~~~~ 142 (199)
.-.+++..+-.-.++-++.-....-+ ..||...| |+.|+.-|+..-+........... ..+.....++..
T Consensus 72 ~l~efl~qLddYtP~IPDavt~~yL~-~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK 150 (176)
T KOG3423|consen 72 HLEEFLAQLDDYTPTIPDAVTDHYLK-KAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKK 150 (176)
T ss_pred HHHHHHHHHhcCCCCCcHHHHHHHHH-hcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 33455555444444444443333333 46887777 566666666655554433221111 111222244556
Q ss_pred ccccHHHHHHHHHhcc
Q 039253 143 AEIKAEHFEESMKYAC 158 (199)
Q Consensus 143 ~~it~~df~~Al~~~~ 158 (199)
..+|++|+..||.+.-
T Consensus 151 ~tLtmeDL~~AL~EyG 166 (176)
T KOG3423|consen 151 YTLTMEDLSPALAEYG 166 (176)
T ss_pred eeeeHHHHHHHHHHhC
Confidence 7899999999998864
No 212
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=36.68 E-value=45 Score=30.05 Aligned_cols=48 Identities=31% Similarity=0.272 Sum_probs=29.7
Q ss_pred EEEEEeeC------------CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC
Q 039253 37 IFVIGVTN------------RPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS 87 (199)
Q Consensus 37 VvvI~aTN------------~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~ 87 (199)
-+||+||| .|.-+|..|+. |+ -.|...+-+.++-.+|++..+....+.
T Consensus 308 PiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 308 PIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp -EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred cEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 36788888 46778888887 66 344555568899999999988766554
No 213
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=36.64 E-value=2.2e+02 Score=26.03 Aligned_cols=105 Identities=17% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCEEEEEeeCC--CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc---C-------CCC----CCcccHHHHHh
Q 039253 34 KKTIFVIGVTNR--PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR---K-------SPV----SKDVDLEKLAQ 97 (199)
Q Consensus 34 ~~~VvvI~aTN~--~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~---~-------~~~----~~~~~l~~la~ 97 (199)
+..|++|++|.- ...|..|++. |.-. +.+.......-..||.+-+. + ++. -.+--++.|+.
T Consensus 248 ~G~I~lIGATTENPSFqln~aLlS--RC~V-fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ 324 (554)
T KOG2028|consen 248 NGDITLIGATTENPSFQLNAALLS--RCRV-FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAY 324 (554)
T ss_pred cCceEEEecccCCCccchhHHHHh--ccce-eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHH
Confidence 345888887743 5688999998 7643 44455566666667766432 1 111 01223667788
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 98 FTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
.++|=.-+-|..|=-.+.+.+.+.... ....++.+|..++|+.-
T Consensus 325 lsdGDaR~aLN~Lems~~m~~tr~g~~----------------~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 325 LSDGDARAALNALEMSLSMFCTRSGQS----------------SRVLLSIDDVKEGLQRS 368 (554)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhcCCc----------------ccceecHHHHHHHHhhc
Confidence 777754443333322111122221110 11467888888887754
No 214
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=36.60 E-value=89 Score=27.03 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=41.3
Q ss_pred CEEEEEeeCCC-------CCCCccccCCCccc-eEEEecCCCH--HHHHHHHHHhhcCC----CCC--Cccc---HHHHH
Q 039253 36 TIFVIGVTNRP-------DIIDPALLRPGRLD-QLIYIPLPVE--KSRLQIFKACLRKS----PVS--KDVD---LEKLA 96 (199)
Q Consensus 36 ~VvvI~aTN~~-------~~lD~al~R~gRfd-~~i~~~~P~~--~~R~~il~~~l~~~----~~~--~~~~---l~~la 96 (199)
++.||++|+.. ..+.+.+.. ||. ..|++|+..+ ++...++.+++... ... ..+. +..|.
T Consensus 141 ~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 141 NVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred cEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 47888888763 345566666 663 3455443321 33445566665322 111 1122 33333
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a 118 (199)
...=--.-++|++++++|+..+
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhc
Confidence 3221224578888888876643
No 215
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=36.13 E-value=1.6e+02 Score=28.73 Aligned_cols=116 Identities=20% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCCCEEEEEeeCCCCCCCccccC--CCccc-eEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHH--H
Q 039253 33 AKKTIFVIGVTNRPDIIDPALLR--PGRLD-QLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD--I 107 (199)
Q Consensus 33 ~~~~VvvI~aTN~~~~lD~al~R--~gRfd-~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaD--I 107 (199)
.+.+++||+..|.-+....-+.- +.|++ .+|.|.+=+.+|-.+|+...+.....-..--++-+|+.-...||.- -
T Consensus 538 ~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRra 617 (767)
T KOG1514|consen 538 KNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRA 617 (767)
T ss_pred CCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHH
Confidence 34567777777765443333331 11444 4566766699999999999997762222222333444444444432 2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 108 TEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 108 ~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
..+|++|...|-.+.... -......|++.|+.+|++.+.-+
T Consensus 618 ldic~RA~Eia~~~~~~~------------k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 618 LDICRRAAEIAEERNVKG------------KLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred HHHHHHHHHHhhhhcccc------------cccccceeehHHHHHHHHHHhhh
Confidence 345666666655444200 01112457888999999887644
No 216
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=35.75 E-value=85 Score=27.97 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCC-----C----CCCEEEEEeeCCCCCCCccccCCCccce-------EEEecCCCHHHHHH----HHH
Q 039253 19 RIPNQLLTEMDGLS-----A----KKTIFVIGVTNRPDIIDPALLRPGRLDQ-------LIYIPLPVEKSRLQ----IFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~~-----~----~~~VvvI~aTN~~~~lD~al~R~gRfd~-------~i~~~~P~~~~R~~----il~ 78 (199)
.+-..|+..|+.-. . ..++.+|+|||..- ..+.+.|+|.. .+.+.+|.-.+|.+ ++.
T Consensus 252 ~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l---~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~ 328 (457)
T PRK11361 252 VLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL---QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLAN 328 (457)
T ss_pred HHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHH
Confidence 34566666665421 1 12478899998532 13334455543 45677777666643 444
Q ss_pred HhhcCC----CCC----CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 039253 79 ACLRKS----PVS----KDVDLEKLAQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 79 ~~l~~~----~~~----~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a 118 (199)
.++.+. ... +...+..|....=.-.-++|++++++|...+
T Consensus 329 ~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 329 HFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 444322 111 1112333333332235678888888876543
No 217
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=35.74 E-value=67 Score=27.90 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCC----CC-------CCCEEEEEeeCCCC-------------CCCccccCCCccceEEEe-cCCCHHHHH
Q 039253 20 IPNQLLTEMDGL----SA-------KKTIFVIGVTNRPD-------------IIDPALLRPGRLDQLIYI-PLPVEKSRL 74 (199)
Q Consensus 20 ~~~~lL~~ld~~----~~-------~~~VvvI~aTN~~~-------------~lD~al~R~gRfd~~i~~-~~P~~~~R~ 74 (199)
....|+..|+.= .. ..+.-|++|+|-.. .+++.++. |||-.+.+ ..|+.+.=.
T Consensus 137 ~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~ 214 (331)
T PF00493_consen 137 DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDE 214 (331)
T ss_dssp HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHH
T ss_pred HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEecccccccccc
Confidence 467777788752 11 23568999999766 59999999 99988775 567877777
Q ss_pred HHHHHhhcCC
Q 039253 75 QIFKACLRKS 84 (199)
Q Consensus 75 ~il~~~l~~~ 84 (199)
.+.++.+...
T Consensus 215 ~la~~il~~~ 224 (331)
T PF00493_consen 215 RLAEHILDSH 224 (331)
T ss_dssp HHHHHHHTTT
T ss_pred ccceEEEecc
Confidence 7777666544
No 218
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=34.68 E-value=2.1e+02 Score=25.30 Aligned_cols=77 Identities=27% Similarity=0.244 Sum_probs=44.8
Q ss_pred EEEEeeCC-------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCC
Q 039253 38 FVIGVTNR-------------PDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFS 103 (199)
Q Consensus 38 vvI~aTN~-------------~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~s 103 (199)
+||+|||+ |.-+++.++. |+-..-..+. +.++-++|++...+...+. .+..+..|+.....-|
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl~Iirt~~y-~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RLLIIRTLPY-DEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhh--heeEEeeccC-CHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 67777774 6677777776 6643333333 5566677777776655544 3445667777655444
Q ss_pred HHHHHHHHHHHHHH
Q 039253 104 GADITEICQRACKD 117 (199)
Q Consensus 104 gaDI~~lv~~A~~~ 117 (199)
-+---+++.-|...
T Consensus 404 LRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 404 LRYAVQLLTPASIL 417 (456)
T ss_pred HHHHHHhcCHHHHH
Confidence 44444444444333
No 219
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=34.53 E-value=86 Score=27.91 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCC-----C----CCCEEEEEeeCCC-------CCCCccccCCCccceEEEecCCCHHHHHH----HHH
Q 039253 19 RIPNQLLTEMDGLS-----A----KKTIFVIGVTNRP-------DIIDPALLRPGRLDQLIYIPLPVEKSRLQ----IFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~~-----~----~~~VvvI~aTN~~-------~~lD~al~R~gRfd~~i~~~~P~~~~R~~----il~ 78 (199)
.+-..|+..++.-. + ..++-+|+||+.. ..+.+.+.. |+. .+.+.+|.-.+|.+ +++
T Consensus 248 ~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~ 324 (445)
T TIGR02915 248 NLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLAN 324 (445)
T ss_pred HHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHH
Confidence 34556666665321 1 1257888888764 223333333 432 35556666666654 445
Q ss_pred HhhcCC----CCC----CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 039253 79 ACLRKS----PVS----KDVDLEKLAQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 79 ~~l~~~----~~~----~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+++..+ ... +..-+..|....=.-.-++|++++++|+..+
T Consensus 325 ~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 325 AFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 555332 111 1222444444332234588999999887654
No 220
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=34.08 E-value=79 Score=28.28 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=41.2
Q ss_pred CEEEEEeeCCCC-------CCCccccCCCccc-eEEEecCCC--HHHHHHHHHHhhcCC----CC---C-CcccHHHHHh
Q 039253 36 TIFVIGVTNRPD-------IIDPALLRPGRLD-QLIYIPLPV--EKSRLQIFKACLRKS----PV---S-KDVDLEKLAQ 97 (199)
Q Consensus 36 ~VvvI~aTN~~~-------~lD~al~R~gRfd-~~i~~~~P~--~~~R~~il~~~l~~~----~~---~-~~~~l~~la~ 97 (199)
++-+|++|+..- .+.+.+.. |+. ..|++|+.. .++...++.+++... .. . +...+..|..
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 467888887532 23333333 443 255555443 355566666666432 11 0 1222333333
Q ss_pred hCCCCC--HHHHHHHHHHHHHHH
Q 039253 98 FTQGFS--GADITEICQRACKDA 118 (199)
Q Consensus 98 ~t~G~s--gaDI~~lv~~A~~~a 118 (199)
. +|. -++|++++++|+..+
T Consensus 347 ~--~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 347 L--RWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred C--CCCChHHHHHHHHHHHHHhC
Confidence 3 453 488899998887655
No 221
>PF11796 DUF3323: Protein of unknown function N-terminus (DUF3323); InterPro: IPR024466 This domain is found to the N terminus of bacterial conserved hypothetical proteins which are encoded within a conserved gene four-gene neighbourhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Beta-proteobacteria).
Probab=33.18 E-value=1.1e+02 Score=24.91 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=39.3
Q ss_pred CccceEEEecCCCHHHHHHHHHHhhcCCCCC--CcccHHHHHh--hCCCCCHHHHHHHHH
Q 039253 57 GRLDQLIYIPLPVEKSRLQIFKACLRKSPVS--KDVDLEKLAQ--FTQGFSGADITEICQ 112 (199)
Q Consensus 57 gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~--~~~~l~~la~--~t~G~sgaDI~~lv~ 112 (199)
||+.-.|.+..|+.++|+.|-..+-+..... ..+.+..+.+ +..+|.+-++..++.
T Consensus 1 G~~~G~v~L~~~t~~Er~al~~llGr~~~~~~~~~v~l~~~~~aL~~s~f~~~~L~~~Le 60 (215)
T PF11796_consen 1 GRLGGTVRLTNLTEEEREALAGLLGRDFSGGKSIRVSLADFDKALRRSRFAGVDLREVLE 60 (215)
T ss_pred CCCceEEEeCCCCHHHHHHHHHHhCCCCCCCCCeeeeHHHHHHHHHHcCCCCCCHHHHHH
Confidence 7888999999999999999887766555422 3344444432 223688888888776
No 222
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=32.59 E-value=86 Score=31.31 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=60.0
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
.+.++-..+. ...+=+|+++|....-....+. |-...++|+.|+.+++..-+..++....+. ..-.++.+.+.
T Consensus 447 ~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~ 520 (871)
T KOG1968|consen 447 GVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKL 520 (871)
T ss_pred hHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHh
Confidence 4444444444 2233578888987777775555 666889999999999998888888654433 34456777774
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRACKD 117 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A~~~ 117 (199)
+++||++++..-...
T Consensus 521 ----~~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 521 ----SGGDIRQIIMQLQFW 535 (871)
T ss_pred ----cccCHHHHHHHHhhh
Confidence 489999887765444
No 223
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=32.47 E-value=2.8e+02 Score=23.84 Aligned_cols=51 Identities=10% Similarity=0.166 Sum_probs=33.8
Q ss_pred ceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 60 DQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 60 d~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
...+.+..|+..+-..+++..+++.... +...+..|+.. +|.|+..+.++-
T Consensus 127 ~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~----~g~dl~~l~~EL 178 (328)
T PRK08487 127 AVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLYFI----HNEDLALAANEL 178 (328)
T ss_pred ceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----hCcHHHHHHHHH
Confidence 3468888899888888888888877655 33345556653 345665555544
No 224
>PF13265 DUF4056: Protein of unknown function (DUF4056)
Probab=32.34 E-value=85 Score=26.70 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=48.2
Q ss_pred ecCC-CHHHHHHHHHHhhcCCCCCCcccHHHHHh------------hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039253 65 IPLP-VEKSRLQIFKACLRKSPVSKDVDLEKLAQ------------FTQGFSGADITEICQRACKDATREEIENDIRRRK 131 (199)
Q Consensus 65 ~~~P-~~~~R~~il~~~l~~~~~~~~~~l~~la~------------~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~ 131 (199)
+..| +.++|..+-..+..++... -..|.+||+ ....||+-|+..-+--|.+. +.-...
T Consensus 126 ~tp~~s~~eR~~lsa~lAa~lAf~-lA~WHEIAQWyG~~Sv~GfsE~~SAFSpEDLYSNlLGArLA-~~lil~------- 196 (270)
T PF13265_consen 126 FTPPLSPAERYTLSAYLAARLAFQ-LAQWHEIAQWYGYQSVPGFSEGISAFSPEDLYSNLLGARLA-LSLILQ------- 196 (270)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccccCCCCcccccCCHHHhhhhHHHHHHH-HHHHHc-------
Confidence 3344 6678777665544433222 124555654 34568999997766555222 111111
Q ss_pred CCCCcchhhccccccHHHHHHHHHhccccccccC
Q 039253 132 GKQPEAIEDEVAEIKAEHFEESMKYACKSQSRGF 165 (199)
Q Consensus 132 ~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r~~ 165 (199)
...++.+.|.+|+...-|.++...
T Consensus 197 ----------g~~~s~~~f~~am~~~l~~aL~~L 220 (270)
T PF13265_consen 197 ----------GPALSVEQFNQAMTQALPQALHQL 220 (270)
T ss_pred ----------CcccCHHHHHHHHHHHHHHHHHHh
Confidence 155788899998888888877643
No 225
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=32.15 E-value=2.2e+02 Score=29.19 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=39.5
Q ss_pred EEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCccc----HHHHHhhCCCCCHH
Q 039253 37 IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVD----LEKLAQFTQGFSGA 105 (199)
Q Consensus 37 VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~G~sga 105 (199)
.-||.||.+ ..+.+....++.++++.|+.++..++|..+.-+....+ .+ ..++++.+.|+.-|
T Consensus 325 srIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~-~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 325 SRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPP-DGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred cEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHhCCCcHH
Confidence 345567764 33444345788999999999999999987764332221 12 23466777776543
No 226
>PRK05629 hypothetical protein; Validated
Probab=31.67 E-value=2.6e+02 Score=23.81 Aligned_cols=75 Identities=9% Similarity=-0.010 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCc---cccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDP---ALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~---al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
-...++..+....+ +.++||.+.+ .+.-.. ++ + .....+++..|...+....+...+++.... .......|
T Consensus 80 ~~~~l~~~l~~~~~-~~~Lil~~~~-~~~~kk~~K~l-~--k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L 154 (318)
T PRK05629 80 PTDLALSAAVDPSP-GIYLIIMHSG-GGRTKSMVPKL-E--KIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHAL 154 (318)
T ss_pred HHHHHHHHHhCCCC-CeEEEEEcCC-cchhhHHHHHH-H--hcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35566777765433 3455555443 211111 22 2 345677888888888888888888777655 23334556
Q ss_pred HhhC
Q 039253 96 AQFT 99 (199)
Q Consensus 96 a~~t 99 (199)
+..+
T Consensus 155 ~~~~ 158 (318)
T PRK05629 155 LEGV 158 (318)
T ss_pred HHHH
Confidence 6644
No 227
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=31.19 E-value=2.2e+02 Score=23.89 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCCCCc----------------ccc-CCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDIIDP----------------ALL-RPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~----------------al~-R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
.+++..+..+-...++++|.+.+. +.|-. .++ + -|+..+.+|.|+..+...++...+..
T Consensus 190 ~~~l~~ik~~~~~~~i~~Il~~D~-~~l~~ai~~~~~~~~~~~~~~~yLeK--iiq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 190 VELLEAIKLLLDFPNIIFILAFDP-EILEKAIEKNYGEGFDEIDGREYLEK--IIQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHhcCCCCeEEEEEecH-HHHHHHHHhhcCcccccccHHHHHHh--hcCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 344444444444578888888763 22222 222 3 48889999999998888888877643
No 228
>PRK07914 hypothetical protein; Reviewed
Probab=30.16 E-value=2.8e+02 Score=23.64 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCcc----ccCCCccc-eEEEecCC-CHHHHHHHHHHhhcCCCCC-CcccH
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPA----LLRPGRLD-QLIYIPLP-VEKSRLQIFKACLRKSPVS-KDVDL 92 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~a----l~R~gRfd-~~i~~~~P-~~~~R~~il~~~l~~~~~~-~~~~l 92 (199)
....|...++...+ ..++|+.+++.. -... +.. .. ..+++..| +..+....++..+++..+. ....+
T Consensus 80 ~~~~l~~~l~~~~~-~t~lil~~~~~~--~~kk~~K~L~k---~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~ 153 (320)
T PRK07914 80 AAALILSAAADLPP-GTVLVVVHSGGG--RAKALANQLRK---LGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTV 153 (320)
T ss_pred HHHHHHHHHhCCCC-CeEEEEEecCCc--chhHHHHHHHH---CCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44566666665433 345555443321 2222 222 22 36788777 8999999999999877655 23335
Q ss_pred HHHHhhCCCCCHHHHHHHHHH
Q 039253 93 EKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 93 ~~la~~t~G~sgaDI~~lv~~ 113 (199)
..|+..+ |.|+..+.++
T Consensus 154 ~~L~~~~----g~dl~~l~~E 170 (320)
T PRK07914 154 TALLDAV----GSDLRELASA 170 (320)
T ss_pred HHHHHHH----CccHHHHHHH
Confidence 5555544 3455555444
No 229
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=29.26 E-value=1.2e+02 Score=28.69 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=41.3
Q ss_pred CEEEEEeeCCCCCCCccccCCCccce-------EEEecCCCHHHHH----HHHHHhhcCC------CCC-CcccHHHHHh
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQ-------LIYIPLPVEKSRL----QIFKACLRKS------PVS-KDVDLEKLAQ 97 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~-------~i~~~~P~~~~R~----~il~~~l~~~------~~~-~~~~l~~la~ 97 (199)
++-+|+||+..- ..+...|+|.. .+.+.+|.-.+|. .+++.++... ... +...+..|..
T Consensus 457 ~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 467899988632 22333345522 4556666665553 4455555432 111 1222344444
Q ss_pred hCCCCCHHHHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~~a 118 (199)
..=.-.-++|+++++.|...+
T Consensus 534 y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhC
Confidence 332235578888888876543
No 230
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=28.87 E-value=80 Score=27.44 Aligned_cols=97 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCC---------CCCCEEEEEeeCCC-------CCCCccccCCCccceEEEecCCCHHH----HHHHHH
Q 039253 19 RIPNQLLTEMDGLS---------AKKTIFVIGVTNRP-------DIIDPALLRPGRLDQLIYIPLPVEKS----RLQIFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~-------~~lD~al~R~gRfd~~i~~~~P~~~~----R~~il~ 78 (199)
.+-..|+..|+.-. ...+|-+|++||.. ..+.+.+.. ||. .+.+.+|.-.+ ...+++
T Consensus 108 ~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~ 184 (329)
T TIGR02974 108 LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAE 184 (329)
T ss_pred HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHH
Confidence 34556666665321 02357889999853 233445555 553 23445555444 444555
Q ss_pred HhhcCC----CCC--Cccc---HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 039253 79 ACLRKS----PVS--KDVD---LEKLAQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 79 ~~l~~~----~~~--~~~~---l~~la~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+++... ... ..+. +..|....=.=.-++|++++++++..+
T Consensus 185 ~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 185 HFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 555322 111 1122 333333221224577888888876654
No 231
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=27.18 E-value=65 Score=20.69 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=9.3
Q ss_pred ccccHHHHHHHH
Q 039253 143 AEIKAEHFEESM 154 (199)
Q Consensus 143 ~~it~~df~~Al 154 (199)
..|+.+|+..|+
T Consensus 54 kti~~~Dv~~Av 65 (65)
T PF00808_consen 54 KTITYEDVAKAV 65 (65)
T ss_dssp SEE-HHHHHHHH
T ss_pred CccCHHHHHHHC
Confidence 679999999886
No 232
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=26.83 E-value=1.3e+02 Score=26.49 Aligned_cols=79 Identities=18% Similarity=0.199 Sum_probs=39.4
Q ss_pred CEEEEEeeCCCCCCCccccCCCccce-------EEEecCCCHHHHH----HHHHHhhcCC----CC----CCcccHHHHH
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQ-------LIYIPLPVEKSRL----QIFKACLRKS----PV----SKDVDLEKLA 96 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~-------~i~~~~P~~~~R~----~il~~~l~~~----~~----~~~~~l~~la 96 (199)
++-+|+||+..- .....+|+|.. .+.+.+|.-.+|. .+++.++... .. -+...+..|.
T Consensus 274 ~~rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 350 (441)
T PRK10365 274 DVRLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLI 350 (441)
T ss_pred ceEEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 466888887632 23345566643 4556666665553 4555555432 11 0122233333
Q ss_pred hhCCCCCHHHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~ 117 (199)
...=.=..++|+++++.|+..
T Consensus 351 ~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 351 HYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred hCCCCCHHHHHHHHHHHHHHh
Confidence 322112447777777776554
No 233
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=26.63 E-value=1.8e+02 Score=19.31 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHH
Q 039253 71 KSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHF 150 (199)
Q Consensus 71 ~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df 150 (199)
..-.++++..-....++++ -...|.+.++ .-+..++..|+..|..+.. .+|..+|+
T Consensus 5 ~~l~~lv~~id~~~~~~~d-a~~~l~~~~e----~fv~~v~~~a~~lAkHr~~-------------------~tv~~~Di 60 (72)
T cd07981 5 RKLQELLKEIDPREQLDPD-VEELLLEIAD----DFVDDVVEDACRLAKHRKS-------------------DTLEVKDV 60 (72)
T ss_pred HHHHHHHHhhCCCCCcCHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHcCC-------------------CCCCHHHH
Confidence 3344555555444333322 1333444333 3356666777666665543 56899999
Q ss_pred HHHHHhc
Q 039253 151 EESMKYA 157 (199)
Q Consensus 151 ~~Al~~~ 157 (199)
+-++++.
T Consensus 61 ~l~l~r~ 67 (72)
T cd07981 61 QLHLERN 67 (72)
T ss_pred HHHHHHh
Confidence 9988764
No 234
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=26.15 E-value=1.6e+02 Score=20.50 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=26.2
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 73 RLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 73 R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
+.+||..+-........+.+..|++.. |++..+|+..|+.-
T Consensus 49 ~~~Vl~~i~~~~~~~~Gv~v~~I~~~l-~~~~~~v~~al~~L 89 (102)
T PF08784_consen 49 QDKVLNFIKQQPNSEEGVHVDEIAQQL-GMSENEVRKALDFL 89 (102)
T ss_dssp HHHHHHHHHC----TTTEEHHHHHHHS-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccHHHHHHHh-CcCHHHHHHHHHHH
Confidence 344444333324444678899999999 99999998888764
No 235
>PLN02641 anthranilate phosphoribosyltransferase
Probab=25.59 E-value=2.2e+02 Score=25.05 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=15.5
Q ss_pred ccccchhhhhhcCCCCCCC
Q 039253 168 EFGFCETAVAANNLIPVSS 186 (199)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~ 186 (199)
...||.|++...|.+++|.
T Consensus 75 ~~D~~gtGGdg~~t~nist 93 (343)
T PLN02641 75 AVDIVGTGGDGANTVNIST 93 (343)
T ss_pred CCceeCCCCCCCCccccHH
Confidence 5789999888888888863
No 236
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=25.32 E-value=2.8e+02 Score=20.37 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHHhccccccccCCcccccchh-------hhhh-cCCCCCCCCCCCCC
Q 039253 143 AEIKAEHFEESMKYACKSQSRGFGDEFGFCET-------AVAA-NNLIPVSSITDGNG 192 (199)
Q Consensus 143 ~~it~~df~~Al~~~~Ps~~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~ 192 (199)
..|+.+|+.-|++.... +.|... .+|. -|-+|+-.+....|
T Consensus 52 ~tV~~eDV~lAi~~r~~---------~~f~~~p~~~~l~~~a~~~N~~pLP~~~~~~g 100 (117)
T cd07979 52 ANIDADDVKLAIQSRVD---------YSFTSPPPRDFLLELAREKNSIPLPPIPPSCG 100 (117)
T ss_pred CCCCHHHHHHHHHHHhc---------cCCCCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 56999999999887654 112211 1122 38888888776655
No 237
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=25.10 E-value=1.2e+02 Score=23.65 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=33.5
Q ss_pred EEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhh
Q 039253 38 FVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQF 98 (199)
Q Consensus 38 vvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~ 98 (199)
+||.+|..|+-+++..+++|+ ..|.+..|-.-+ ..+.++.-++|++.+-++
T Consensus 90 iVIsat~~~~ii~~~~~~~~~--viIDla~prdvd--------~~~~~~~G~~d~~~~~~~ 140 (168)
T cd01080 90 IVIVAVGKPGLVKGDMVKPGA--VVIDVGINRVPD--------KSGGKLVGDVDFESAKEK 140 (168)
T ss_pred EEEEcCCCCceecHHHccCCe--EEEEccCCCccc--------ccCCCeeCCcCHHHHHhh
Confidence 788888888889988888664 367777764322 333345556676655544
No 238
>PRK05907 hypothetical protein; Provisional
Probab=24.30 E-value=3.8e+02 Score=23.12 Aligned_cols=78 Identities=9% Similarity=-0.086 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeeCCCCCCC---ccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 21 PNQLLTEMDGLSAKKTIFVIGVTNRPDIID---PALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD---~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
...|...++...+ +.++||.+.+ .+..+ ..+...+-++..++++.+...+-...+...+++.... ....+..++
T Consensus 86 ~~~L~~Yl~np~~-~~~liv~~~~-~d~~kkl~K~i~k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~ 163 (311)
T PRK05907 86 QEFLIRYARNPNP-HLTLFLFTTK-QECFSSLSKKLSSALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFV 163 (311)
T ss_pred HHHHHHHHhCCCC-CeEEEEEEec-ccHHHHHHHHHhhcceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 4567777776544 3344433332 33322 2222233333335777788777777777777766544 334456677
Q ss_pred hhCC
Q 039253 97 QFTQ 100 (199)
Q Consensus 97 ~~t~ 100 (199)
.++.
T Consensus 164 ~~~~ 167 (311)
T PRK05907 164 SKFP 167 (311)
T ss_pred HHcc
Confidence 7663
No 239
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=23.44 E-value=91 Score=20.47 Aligned_cols=13 Identities=0% Similarity=0.388 Sum_probs=10.6
Q ss_pred ccccHHHHHHHHH
Q 039253 143 AEIKAEHFEESMK 155 (199)
Q Consensus 143 ~~it~~df~~Al~ 155 (199)
..+|.+|+..|++
T Consensus 53 ktlt~~DI~~Alk 65 (65)
T smart00803 53 TTLTTSDIDSALR 65 (65)
T ss_pred CeecHHHHHHHhC
Confidence 5689999998874
No 240
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=1.9e+02 Score=27.71 Aligned_cols=60 Identities=17% Similarity=0.396 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHhCCCCC-CCEEEEEeeCCCCCCCc-cccCCCccceEEEecCCCH-HHHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAK-KTIFVIGVTNRPDIIDP-ALLRPGRLDQLIYIPLPVE-KSRLQIFK 78 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~-~~VvvI~aTN~~~~lD~-al~R~gRfd~~i~~~~P~~-~~R~~il~ 78 (199)
+.-++..|+..+....++ .+.+|++||.+.+-|-. .+.. .|+..|++|.-+. ++-.+++.
T Consensus 621 SN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 621 SNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 445666777778776655 45888888887665544 4555 7999999876543 44444443
No 241
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=22.99 E-value=90 Score=23.70 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHhCC---------CCCCCEEEEEeeCCCC-----CCCccccCCCcc
Q 039253 17 ADRIPNQLLTEMDGL---------SAKKTIFVIGVTNRPD-----IIDPALLRPGRL 59 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~---------~~~~~VvvI~aTN~~~-----~lD~al~R~gRf 59 (199)
.-++-+.||+.|..- .-..+.+||||-|..+ .|++|.+. ||
T Consensus 75 ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 346778888888743 1124578888888666 67777776 66
No 242
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=22.86 E-value=49 Score=25.05 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCcc--ccC-CCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPA--LLR-PGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLE 93 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~a--l~R-~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~ 93 (199)
......|...+.... ..+++|..++ +.+|.. +.. -..-...+.+..|+..+...+++..++..... ..-.+.
T Consensus 75 ~~~~~~l~~~l~~~~--~~~~lii~~~--~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~ 150 (172)
T PF06144_consen 75 KKEIKALIEYLSNPP--PDCILIIFSE--EKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPDAAQ 150 (172)
T ss_dssp TTHHHHHHHHTTT----SSEEEEEEES---S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HHHHH
T ss_pred HHHHHHHHHHHhCCC--CCEEEEEEeC--CchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345667777776543 3444454544 444421 111 11344678889999999999999999877654 223345
Q ss_pred HHHhhCCCCCHHHHHHHHHH
Q 039253 94 KLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 94 ~la~~t~G~sgaDI~~lv~~ 113 (199)
.|+..+ |.|+..+.++
T Consensus 151 ~L~~~~----~~d~~~l~~E 166 (172)
T PF06144_consen 151 YLIERV----GNDLSLLQNE 166 (172)
T ss_dssp HHHHHH----TT-HHHHHHH
T ss_pred HHHHHh----ChHHHHHHHH
Confidence 555543 4444444433
No 243
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=22.53 E-value=2e+02 Score=26.62 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=40.0
Q ss_pred CEEEEEeeCCCC-------CCCccccCCCccceEEEecCCCHHHHH----HHHHHhhcC----CCCC-CcccHHHHHhh-
Q 039253 36 TIFVIGVTNRPD-------IIDPALLRPGRLDQLIYIPLPVEKSRL----QIFKACLRK----SPVS-KDVDLEKLAQF- 98 (199)
Q Consensus 36 ~VvvI~aTN~~~-------~lD~al~R~gRfd~~i~~~~P~~~~R~----~il~~~l~~----~~~~-~~~~l~~la~~- 98 (199)
+|-||+||+.+- .+.+.+.. |+.. +.+.+|.-.+|. .++..++.. .... ..+.-+.+...
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~ 415 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLT 415 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHh
Confidence 467888887642 23344444 5443 556666555544 344444432 2111 12222222222
Q ss_pred CCCC--CHHHHHHHHHHHHHHH
Q 039253 99 TQGF--SGADITEICQRACKDA 118 (199)
Q Consensus 99 t~G~--sgaDI~~lv~~A~~~a 118 (199)
...| .-++|++++.+|+..+
T Consensus 416 ~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 416 RYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred cCCCCCHHHHHHHHHHHHHHhC
Confidence 2224 5578888888887654
No 244
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=22.47 E-value=64 Score=28.85 Aligned_cols=47 Identities=26% Similarity=0.462 Sum_probs=36.3
Q ss_pred CCCCEEEEEeeCCCCCCC---ccccCCCccceE-EEecCC-CHHHHHHHHHHhh
Q 039253 33 AKKTIFVIGVTNRPDIID---PALLRPGRLDQL-IYIPLP-VEKSRLQIFKACL 81 (199)
Q Consensus 33 ~~~~VvvI~aTN~~~~lD---~al~R~gRfd~~-i~~~~P-~~~~R~~il~~~l 81 (199)
.+.+|.||+.|.+.+.++ ..+.+ ||.++ |+++.| +.++-..+++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 367899999999866554 56777 99988 555544 5688889999888
No 245
>COG1945 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) [Amino acid transport and metabolism]
Probab=21.79 E-value=31 Score=27.16 Aligned_cols=31 Identities=39% Similarity=0.534 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhccccccccCCcccccchhhhhhcCCCCCCCCCCCCCC
Q 039253 146 KAEHFEESMKYACKSQSRGFGDEFGFCETAVAANNLIPVSSITDGNGE 193 (199)
Q Consensus 146 t~~df~~Al~~~~Ps~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (199)
...-|+.||.+. | ..--||+|||||--.|.+
T Consensus 21 ~L~aFd~AL~dA------g-----------I~~~NLV~vSSIlPp~~~ 51 (163)
T COG1945 21 ELNAFDAALLDA------G-----------IENFNLVPVSSILPPNCE 51 (163)
T ss_pred hhHhHHHHHHhC------C-----------CcccceEEEecccCCccc
Confidence 467788888765 2 233499999999875543
No 246
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=21.32 E-value=52 Score=23.24 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=14.4
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccccCCcccccch
Q 039253 95 LAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSRGFGDEFGFCE 173 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r~~~~~~~~~~ 173 (199)
-+..-+.+.-..|..+|..|...|..+.. ..++.+||.-+++.-++...| +.+-+.|-+
T Consensus 24 Tv~lvE~iv~~~i~~l~~~A~~~a~~rg~-------------------~~i~~eDl~F~lR~D~~Kl~R-l~~~L~~k~ 82 (93)
T PF02269_consen 24 TVDLVEDIVREYIIELCQEAMEVAQRRGS-------------------KKIKVEDLLFLLRKDPKKLAR-LRELLSMKD 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------------CcCcHHHHHHHHhcCHHHHHH-HHHHHHHHH
Confidence 33334445666778888888777776653 468899999999887655555 444444443
No 247
>PF12846 AAA_10: AAA-like domain
Probab=21.21 E-value=54 Score=26.87 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=34.4
Q ss_pred CCCCEEEEEeeCCCCCCC-----ccccCCCccceEEEecCCCHHHHH
Q 039253 33 AKKTIFVIGVTNRPDIID-----PALLRPGRLDQLIYIPLPVEKSRL 74 (199)
Q Consensus 33 ~~~~VvvI~aTN~~~~lD-----~al~R~gRfd~~i~~~~P~~~~R~ 74 (199)
++.++.++.+|..|.+++ ++++. -....|.+..++.+...
T Consensus 250 Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~~~~~~~~~~ 294 (304)
T PF12846_consen 250 RKYGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIFRLEDSDDAE 294 (304)
T ss_pred HhcCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEecCChHHHHH
Confidence 456789999999999999 88988 89999999998877766
No 248
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=21.15 E-value=2e+02 Score=20.22 Aligned_cols=39 Identities=23% Similarity=0.176 Sum_probs=29.5
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
...++|++-+..+++-|...|-.... ..|+.+|+.+|+.
T Consensus 56 ~~~~lS~R~~~rilrvARTIADL~~~-------------------~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 56 EKLNLSARGYHRILRVARTIADLEGS-------------------ERITREHIAEALS 94 (96)
T ss_pred HHcCcCHHHHHHHHHHHHHHHhHcCC-------------------CCCCHHHHHHHHh
Confidence 35678999999998888666644332 5689999999985
No 249
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=21.04 E-value=6.7e+02 Score=24.57 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=31.6
Q ss_pred EEEEEeeCCCC-------------CCCccccCCCccceE-EEecCCCHHHHHHHHHHhhcC
Q 039253 37 IFVIGVTNRPD-------------IIDPALLRPGRLDQL-IYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 37 VvvI~aTN~~~-------------~lD~al~R~gRfd~~-i~~~~P~~~~R~~il~~~l~~ 83 (199)
.-||||+|-.. .+.+++++ |||-. |.+.-|++..=+.|-++.+..
T Consensus 486 tSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 486 TSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred hhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 45778887432 57889999 99965 455678887777777766643
No 250
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=20.70 E-value=2.9e+02 Score=24.74 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCC-----C----CCCEEEEEeeCCC-------CCCCccccCCCcc-ceEEEecCCCH--HHHHHHHHH
Q 039253 19 RIPNQLLTEMDGLS-----A----KKTIFVIGVTNRP-------DIIDPALLRPGRL-DQLIYIPLPVE--KSRLQIFKA 79 (199)
Q Consensus 19 r~~~~lL~~ld~~~-----~----~~~VvvI~aTN~~-------~~lD~al~R~gRf-d~~i~~~~P~~--~~R~~il~~ 79 (199)
.+-..|+..|+.-. + ..++-+|+||+.. ..+.+.+.. || ...|.+|+-.+ ++...++.+
T Consensus 247 ~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~ 324 (469)
T PRK10923 247 DVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARH 324 (469)
T ss_pred HHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHH
Confidence 34456666665321 1 1246788888753 234455555 55 34444443321 344456666
Q ss_pred hhcCC----C--C--CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 039253 80 CLRKS----P--V--SKDVDLEKLAQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 80 ~l~~~----~--~--~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a 118 (199)
++... . . -+..-+..|....=.-.-++|+++++++...+
T Consensus 325 ~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 325 FLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 66432 1 1 11222444444332335678899988886654
No 251
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=20.40 E-value=2.7e+02 Score=22.79 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=37.8
Q ss_pred CEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC----CCCcccHHHHHhhCCCC
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP----VSKDVDLEKLAQFTQGF 102 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~----~~~~~~l~~la~~t~G~ 102 (199)
+.-||.||.... +-..+. .-...++++..+.++-.++|........ ...+.....|++.+.|+
T Consensus 129 ~~kilvTTR~~~-v~~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 195 (287)
T PF00931_consen 129 GSKILVTTRDRS-VAGSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL 195 (287)
T ss_dssp S-EEEEEESCGG-GGTTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred cccccccccccc-cccccc---ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 456777887542 211111 1267899998899999999998875443 11223457888988775
No 252
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=20.21 E-value=3e+02 Score=23.96 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCC----CCCCccccCCCccceEEEecCC
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRP----DIIDPALLRPGRLDQLIYIPLP 68 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~----~~lD~al~R~gRfd~~i~~~~P 68 (199)
.++..+..+++...+.+ . || +||.. ..+-.++.+|.||=-...|.+|
T Consensus 96 ~vK~~lf~~l~~~~~~~-a-Il-aSnTS~l~~s~la~~~~~p~R~~g~HffnP~ 146 (321)
T PRK07066 96 ALKLELHERISRAAKPD-A-II-ASSTSGLLPTDFYARATHPERCVVGHPFNPV 146 (321)
T ss_pred HHHHHHHHHHHHhCCCC-e-EE-EECCCccCHHHHHHhcCCcccEEEEecCCcc
Confidence 46777888888765544 3 33 33332 3344456688888666666554
No 253
>PF07424 TrbM: TrbM; InterPro: IPR009989 This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulphonate (TSA) degradation [].
Probab=20.18 E-value=1.8e+02 Score=22.96 Aligned_cols=75 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred EEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCC-CCcccHHHHHhhCCCCCHHHHHHHHHH
Q 039253 37 IFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPV-SKDVDLEKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 37 VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~-~~~~~l~~la~~t~G~sgaDI~~lv~~ 113 (199)
|+.+++.++|..-++++.+ -|..+..-+--+...|+.+|..+=....- .-......|+.....-+...|-..++.
T Consensus 13 vLCL~~~~~~~EC~~~~~~--yfsI~~kk~~~T~~aR~~FL~~Cp~~~~~~~m~~Lv~ai~ngagrCda~~LN~~~~~ 88 (165)
T PF07424_consen 13 VLCLAGGSRPSECSPALKR--YFSIKKKKPSKTIDARKNFLNLCPTADSDPEMPKLVNAIANGAGRCDAEYLNRQLEK 88 (165)
T ss_pred eeEecCCCCcccccHHHHh--hceeecCChHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCCCcCHHHHHHHHHH
Confidence 7788888899999999999 88865544334668898888766422110 001112334544444555555554443
Done!