Query 039253
Match_columns 199
No_of_seqs 195 out of 1683
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 1.1E-31 3.6E-36 236.8 14.1 143 3-164 251-396 (405)
2 3cf2_A TER ATPase, transitiona 100.0 3E-33 1E-37 264.5 4.2 170 3-172 580-765 (806)
3 4b4t_M 26S protease regulatory 100.0 4.5E-31 1.5E-35 235.1 14.3 144 3-165 284-430 (434)
4 4b4t_I 26S protease regulatory 100.0 6.9E-31 2.4E-35 232.7 14.7 144 3-165 285-431 (437)
5 4b4t_L 26S protease subunit RP 100.0 9.4E-31 3.2E-35 233.2 14.5 148 3-169 284-434 (437)
6 4b4t_K 26S protease regulatory 100.0 1.1E-29 3.7E-34 225.9 14.9 142 3-163 275-421 (428)
7 4b4t_H 26S protease regulatory 100.0 1.4E-29 4.7E-34 226.2 14.7 142 3-163 312-456 (467)
8 3cf2_A TER ATPase, transitiona 99.9 4.6E-27 1.6E-31 222.3 14.5 162 3-166 307-468 (806)
9 2x8a_A Nuclear valosin-contain 99.9 1.2E-25 4E-30 189.1 13.1 152 5-164 115-271 (274)
10 3cf0_A Transitional endoplasmi 99.9 1.3E-22 4.5E-27 171.9 16.3 150 15-164 133-288 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 99.9 6.6E-23 2.3E-27 175.7 13.3 159 4-164 116-306 (322)
12 2qp9_X Vacuolar protein sortin 99.9 5.2E-22 1.8E-26 172.2 11.5 159 4-164 154-338 (355)
13 3eie_A Vacuolar protein sortin 99.9 5.4E-22 1.8E-26 169.5 11.4 159 4-164 121-305 (322)
14 2zan_A Vacuolar protein sortin 99.9 8.8E-22 3E-26 175.6 11.5 158 4-163 238-427 (444)
15 3hu3_A Transitional endoplasmi 99.9 1.4E-21 4.7E-26 176.5 12.6 173 4-178 308-483 (489)
16 2ce7_A Cell division protein F 99.8 6.6E-21 2.2E-25 171.5 13.4 140 4-162 119-261 (476)
17 1lv7_A FTSH; alpha/beta domain 99.8 1.5E-19 5E-24 149.0 16.0 125 16-159 130-254 (257)
18 1ypw_A Transitional endoplasmi 99.8 4.1E-23 1.4E-27 196.2 -6.2 160 4-163 581-749 (806)
19 2dhr_A FTSH; AAA+ protein, hex 99.8 1.8E-20 6.1E-25 169.6 11.1 154 5-177 135-298 (499)
20 1ixz_A ATP-dependent metallopr 99.8 2.4E-19 8.2E-24 147.5 14.0 121 15-154 133-253 (254)
21 3h4m_A Proteasome-activating n 99.8 1.4E-18 4.6E-23 144.8 12.4 128 17-163 137-264 (285)
22 1iy2_A ATP-dependent metallopr 99.8 2.5E-18 8.7E-23 143.5 13.9 121 15-154 157-277 (278)
23 2qz4_A Paraplegin; AAA+, SPG7, 99.8 4.8E-19 1.6E-23 145.3 8.9 130 15-163 124-255 (262)
24 3d8b_A Fidgetin-like protein 1 99.8 2.3E-18 7.8E-23 149.2 11.1 151 5-164 188-341 (357)
25 3b9p_A CG5977-PA, isoform A; A 99.7 1.6E-18 5.4E-23 145.3 7.1 151 5-164 125-279 (297)
26 2r62_A Cell division protease 99.7 6.9E-19 2.3E-23 145.5 -0.9 128 18-164 132-260 (268)
27 2krk_A 26S protease regulatory 99.7 3.1E-17 1.1E-21 115.2 6.5 78 64-160 7-84 (86)
28 3kw6_A 26S protease regulatory 99.7 5E-17 1.7E-21 111.8 6.9 76 66-160 1-76 (78)
29 3vfd_A Spastin; ATPase, microt 99.7 2E-16 6.8E-21 138.2 11.6 150 5-163 219-371 (389)
30 3aji_B S6C, proteasome (prosom 99.6 1.2E-16 4.1E-21 111.1 5.4 75 69-162 2-76 (83)
31 3vlf_B 26S protease regulatory 99.6 2.9E-16 9.8E-21 110.6 7.0 76 69-163 2-77 (88)
32 1ypw_A Transitional endoplasmi 99.6 8.6E-15 2.9E-19 139.1 14.8 159 4-164 308-466 (806)
33 2dzn_B 26S protease regulatory 99.5 3.7E-15 1.3E-19 103.4 2.3 75 71-164 1-76 (82)
34 3t15_A Ribulose bisphosphate c 99.3 1E-12 3.5E-17 110.8 6.9 88 16-109 124-222 (293)
35 2c9o_A RUVB-like 1; hexameric 98.8 3.5E-11 1.2E-15 107.2 -8.9 86 19-113 171-262 (456)
36 1g41_A Heat shock protein HSLU 98.7 1.6E-09 5.3E-14 96.6 -0.3 67 9-77 120-188 (444)
37 3uk6_A RUVB-like 2; hexameric 98.6 1.5E-07 5.3E-12 80.2 8.7 115 19-157 204-330 (368)
38 3syl_A Protein CBBX; photosynt 98.6 7.5E-08 2.6E-12 80.3 6.5 105 16-124 151-268 (309)
39 3pfi_A Holliday junction ATP-d 98.5 7.7E-07 2.6E-11 75.2 11.0 99 18-119 120-235 (338)
40 3bos_A Putative DNA replicatio 98.3 9.7E-07 3.3E-11 70.0 7.0 112 21-155 123-241 (242)
41 1njg_A DNA polymerase III subu 98.3 3E-06 1E-10 66.5 9.4 108 18-154 140-248 (250)
42 1hqc_A RUVB; extended AAA-ATPa 98.3 1.3E-06 4.5E-11 73.0 7.7 80 36-118 138-218 (324)
43 3m6a_A ATP-dependent protease 98.3 3E-07 1E-11 83.7 3.9 123 20-158 195-342 (543)
44 2chg_A Replication factor C sm 98.2 6.9E-06 2.4E-10 63.8 9.0 107 19-155 117-224 (226)
45 2r44_A Uncharacterized protein 98.2 1.2E-05 4E-10 67.8 11.0 65 18-84 123-201 (331)
46 1ofh_A ATP-dependent HSL prote 98.2 2E-06 6.7E-11 71.2 5.7 125 19-158 143-300 (310)
47 2v1u_A Cell division control p 98.1 9.7E-06 3.3E-10 68.7 9.4 117 19-158 150-277 (387)
48 1d2n_A N-ethylmaleimide-sensit 98.1 1.6E-06 5.4E-11 71.3 4.3 115 17-160 147-267 (272)
49 2z4s_A Chromosomal replication 98.1 4E-06 1.4E-10 74.3 6.3 115 21-159 213-334 (440)
50 1g8p_A Magnesium-chelatase 38 98.1 1.9E-05 6.4E-10 66.5 10.0 122 19-162 159-327 (350)
51 1in4_A RUVB, holliday junction 97.9 6.7E-05 2.3E-09 63.7 9.7 101 36-158 150-251 (334)
52 4fcw_A Chaperone protein CLPB; 97.9 1.2E-05 4.2E-10 66.6 4.8 105 18-124 133-284 (311)
53 2qby_B CDC6 homolog 3, cell di 97.8 6.7E-05 2.3E-09 63.8 8.2 81 35-118 163-252 (384)
54 3pxg_A Negative regulator of g 97.8 4.3E-05 1.5E-09 68.1 7.2 82 34-118 289-385 (468)
55 3f9v_A Minichromosome maintena 97.7 6E-05 2E-09 69.3 7.3 121 19-161 406-591 (595)
56 1fnn_A CDC6P, cell division co 97.7 8.1E-05 2.8E-09 63.2 7.7 100 19-120 140-256 (389)
57 2qby_A CDC6 homolog 1, cell di 97.7 0.0001 3.5E-09 62.2 8.2 96 19-119 147-253 (386)
58 1l8q_A Chromosomal replication 97.7 0.00013 4.6E-09 61.1 8.5 91 22-117 118-214 (324)
59 1jr3_A DNA polymerase III subu 97.7 0.0003 1E-08 59.5 10.5 92 18-115 133-225 (373)
60 1sxj_D Activator 1 41 kDa subu 97.6 0.00029 1E-08 59.1 9.7 92 19-116 148-240 (353)
61 2c9o_A RUVB-like 1; hexameric 97.6 0.00016 5.4E-09 64.1 8.1 115 18-157 309-437 (456)
62 3pxi_A Negative regulator of g 97.5 0.0002 6.7E-09 67.2 8.1 83 34-119 289-386 (758)
63 2chq_A Replication factor C sm 97.5 0.00024 8.4E-09 58.5 7.8 89 20-114 118-207 (319)
64 1iqp_A RFCS; clamp loader, ext 97.4 0.00028 9.6E-09 58.4 7.3 91 19-115 125-216 (327)
65 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00021 7.2E-09 66.9 6.8 114 27-158 306-434 (758)
66 1sxj_B Activator 1 37 kDa subu 97.4 0.00066 2.3E-08 56.0 8.7 90 19-114 122-212 (323)
67 3pxi_A Negative regulator of g 97.4 0.00037 1.3E-08 65.4 7.9 105 17-123 592-729 (758)
68 3pvs_A Replication-associated 97.3 0.00016 5.4E-09 64.2 4.0 114 21-159 123-246 (447)
69 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00031 1.1E-08 65.8 6.2 106 17-124 570-721 (758)
70 1sxj_E Activator 1 40 kDa subu 97.2 0.001 3.5E-08 56.0 8.3 91 19-115 149-241 (354)
71 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.00049 1.7E-08 62.0 6.3 103 17-122 122-270 (500)
72 3hws_A ATP-dependent CLP prote 97.1 0.0022 7.6E-08 54.6 9.3 72 49-122 239-326 (363)
73 1a5t_A Delta prime, HOLB; zinc 96.7 0.0042 1.4E-07 52.5 8.0 86 18-113 122-207 (334)
74 3u61_B DNA polymerase accessor 96.7 0.0027 9.3E-08 52.9 6.6 79 18-101 120-207 (324)
75 1qvr_A CLPB protein; coiled co 96.6 0.002 6.8E-08 61.3 5.4 106 17-124 673-825 (854)
76 1qvr_A CLPB protein; coiled co 96.5 0.0038 1.3E-07 59.4 6.5 93 20-119 287-393 (854)
77 1jbk_A CLPB protein; beta barr 96.4 0.00023 7.7E-09 53.7 -2.0 40 35-77 150-194 (195)
78 1w5s_A Origin recognition comp 96.4 0.011 3.7E-07 50.4 8.1 98 19-119 159-274 (412)
79 1sxj_A Activator 1 95 kDa subu 96.1 0.022 7.4E-07 51.1 9.1 84 20-114 167-252 (516)
80 4akg_A Glutathione S-transfera 96.1 0.015 5.2E-07 61.5 8.9 78 36-116 1384-1487(2695)
81 3k1j_A LON protease, ATP-depen 95.9 0.014 4.7E-07 53.4 6.8 100 36-156 252-374 (604)
82 1um8_A ATP-dependent CLP prote 95.9 0.011 3.6E-07 50.5 5.6 91 49-154 256-362 (376)
83 1g41_A Heat shock protein HSLU 95.7 0.064 2.2E-06 47.5 9.9 121 20-155 278-431 (444)
84 3te6_A Regulatory protein SIR3 95.4 0.053 1.8E-06 45.9 8.1 62 18-83 147-213 (318)
85 1sxj_C Activator 1 40 kDa subu 95.3 0.034 1.2E-06 46.6 6.5 77 19-100 125-202 (340)
86 2gno_A DNA polymerase III, gam 94.7 0.035 1.2E-06 46.5 4.9 57 18-81 96-152 (305)
87 1ojl_A Transcriptional regulat 93.7 0.058 2E-06 44.9 4.3 97 19-118 111-235 (304)
88 2p65_A Hypothetical protein PF 93.0 0.0083 2.8E-07 44.9 -1.9 43 20-69 140-187 (187)
89 2bjv_A PSP operon transcriptio 91.8 0.31 1.1E-05 39.0 6.1 96 19-117 115-239 (265)
90 1jr3_D DNA polymerase III, del 91.2 0.63 2.2E-05 38.7 7.5 91 18-114 91-188 (343)
91 3f8t_A Predicted ATPase involv 85.8 3.5 0.00012 37.0 8.8 126 17-163 313-489 (506)
92 2r2a_A Uncharacterized protein 64.3 4.3 0.00015 31.5 2.9 47 24-73 112-158 (199)
93 1svm_A Large T antigen; AAA+ f 63.3 0.82 2.8E-05 39.4 -1.6 40 22-67 245-284 (377)
94 2fna_A Conserved hypothetical 62.6 21 0.00073 28.6 7.0 73 36-112 170-251 (357)
95 2qen_A Walker-type ATPase; unk 58.9 40 0.0014 26.9 8.0 55 57-112 192-247 (350)
96 3vkg_A Dynein heavy chain, cyt 57.8 11 0.00039 41.0 5.4 45 35-82 1421-1470(3245)
97 1ny5_A Transcriptional regulat 57.2 6.2 0.00021 33.6 2.9 97 19-118 246-370 (387)
98 3cmw_A Protein RECA, recombina 44.5 6.9 0.00024 40.1 1.2 35 15-50 1188-1223(1706)
99 2iut_A DNA translocase FTSK; n 43.0 39 0.0013 30.7 5.8 54 23-78 365-420 (574)
100 2o71_A Death domain-containing 35.5 1.1E+02 0.0038 21.3 7.3 86 62-171 16-110 (115)
101 1b67_A Protein (histone HMFA); 33.5 27 0.00092 21.9 2.4 16 143-158 53-68 (68)
102 3dzd_A Transcriptional regulat 30.7 48 0.0016 27.8 4.2 94 19-117 237-360 (368)
103 2ius_A DNA translocase FTSK; n 29.0 58 0.002 29.0 4.5 53 25-79 321-375 (512)
104 2vhj_A Ntpase P4, P4; non- hyd 27.9 14 0.00047 31.2 0.3 36 18-54 208-243 (331)
105 2ys9_A Homeobox and leucine zi 27.8 64 0.0022 20.9 3.4 34 75-109 19-52 (70)
106 3ado_A Lambda-crystallin; L-gu 24.7 1.2E+02 0.0042 25.0 5.6 47 19-68 100-150 (319)
107 3b0c_W CENP-W, centromere prot 23.8 83 0.0028 20.1 3.5 15 143-157 56-70 (76)
108 1taf_B TFIID TBP associated fa 23.6 48 0.0017 21.3 2.2 13 143-155 57-69 (70)
109 1tzy_D Histone H4-VI; histone- 20.3 72 0.0025 21.8 2.8 15 143-157 80-94 (103)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-31 Score=236.75 Aligned_cols=143 Identities=36% Similarity=0.549 Sum_probs=130.3
Q ss_pred cceeeccCCCCCc---hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGG---AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~~~---~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++++++|+.+.++ ...+++++||++||++....+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.
T Consensus 251 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 330 (405)
T 4b4t_J 251 DSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRI 330 (405)
T ss_dssp SCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHH
Confidence 4788888765433 4568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..|+++||..|++++.|
T Consensus 331 ~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~-------------------~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 331 HSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERR-------------------IHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-------------------SBCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCcCHHHHHHHHHHHhC
Confidence 99999998899999999999999999999999999999988642 56999999999999988
Q ss_pred ccccc
Q 039253 160 SQSRG 164 (199)
Q Consensus 160 s~~r~ 164 (199)
+..+.
T Consensus 392 ~~~~~ 396 (405)
T 4b4t_J 392 KNQET 396 (405)
T ss_dssp HHTCC
T ss_pred ccccc
Confidence 76653
No 2
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.97 E-value=3e-33 Score=264.46 Aligned_cols=170 Identities=64% Similarity=0.972 Sum_probs=93.1
Q ss_pred cceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++++++|+.. .++..+|++++||++||++.+..+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 4788999743 4556889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCC------CcchhhccccccHHHHHHH
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQ------PEAIEDEVAEIKAEHFEES 153 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~it~~df~~A 153 (199)
++++.++..++++..||+.|+||||+||+++|++|++.|+++.+.+......... .....+...+|+++||..|
T Consensus 660 ~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~a 739 (806)
T 3cf2_A 660 NLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEA 739 (806)
T ss_dssp TSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTT
T ss_pred HhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHH
Confidence 9999999889999999999999999999999999999999998764332211100 0112233467999999999
Q ss_pred HHhccccccc-------cCCcccccc
Q 039253 154 MKYACKSQSR-------GFGDEFGFC 172 (199)
Q Consensus 154 l~~~~Ps~~r-------~~~~~~~~~ 172 (199)
++.++||++. .|.++|+++
T Consensus 740 l~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 740 MRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp C---------------CCCC------
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999999874 355555544
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.5e-31 Score=235.06 Aligned_cols=144 Identities=34% Similarity=0.491 Sum_probs=131.6
Q ss_pred cceeeccCCCCCc---hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGG---AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~~~---~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++|+++|..+.++ ...+++++||++||++.+..+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.
T Consensus 284 Dal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (434)
T 4b4t_M 284 DAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQI 363 (434)
T ss_dssp HHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHH
Confidence 4678888765333 3567899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..|+++||..|+++++|
T Consensus 364 ~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~-------------------~~i~~~Df~~Al~~v~~ 424 (434)
T 4b4t_M 364 HSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ-------------------SSVKHEDFVEGISEVQA 424 (434)
T ss_dssp HHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC-------------------SSBCHHHHHHHHHSCSS
T ss_pred HhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCcCHHHHHHHHHHHhC
Confidence 99999988899999999999999999999999999999988752 56999999999999999
Q ss_pred cccccC
Q 039253 160 SQSRGF 165 (199)
Q Consensus 160 s~~r~~ 165 (199)
+.++.+
T Consensus 425 ~~~~~i 430 (434)
T 4b4t_M 425 RKSKSV 430 (434)
T ss_dssp SCCCCC
T ss_pred CCCcCc
Confidence 988765
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-31 Score=232.73 Aligned_cols=144 Identities=31% Similarity=0.432 Sum_probs=131.3
Q ss_pred cceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++++++|+.+. +....+++++||++||++....+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.
T Consensus 285 Dai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 285 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp SSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH
Confidence 47888996553 334578899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..|+++||..|++++.|
T Consensus 365 ~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~-------------------~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 365 HTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR-------------------MQVTAEDFKQAKERVMK 425 (437)
T ss_dssp HHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC-------------------SCBCHHHHHHHHHHHHH
T ss_pred HhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CccCHHHHHHHHHHHhC
Confidence 99999998899999999999999999999999999999988642 56999999999999999
Q ss_pred cccccC
Q 039253 160 SQSRGF 165 (199)
Q Consensus 160 s~~r~~ 165 (199)
+..++-
T Consensus 426 ~~~~e~ 431 (437)
T 4b4t_I 426 NKVEEN 431 (437)
T ss_dssp HHCCCS
T ss_pred CCChhh
Confidence 887653
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.4e-31 Score=233.17 Aligned_cols=148 Identities=34% Similarity=0.475 Sum_probs=129.2
Q ss_pred cceeeccCCCC---CchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGA---GGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~---~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++++++|++.. +....+++++||++||++.+..+|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.
T Consensus 284 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~ 363 (437)
T 4b4t_L 284 DAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKI 363 (437)
T ss_dssp CSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHH
T ss_pred cccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHH
Confidence 47888886543 334568899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
|++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..|+++||..|++++.|
T Consensus 364 ~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~-------------------~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 364 HTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR-------------------DHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHHHH
T ss_pred HhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCCCHHHHHHHHHHHHh
Confidence 99999988899999999999999999999999999999987642 56999999999999999
Q ss_pred cccccCCccc
Q 039253 160 SQSRGFGDEF 169 (199)
Q Consensus 160 s~~r~~~~~~ 169 (199)
+...+-..+|
T Consensus 425 ~~k~e~~~e~ 434 (437)
T 4b4t_L 425 VKKLEGTIEY 434 (437)
T ss_dssp TCC-------
T ss_pred ccCcccchhh
Confidence 8766544333
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-29 Score=225.88 Aligned_cols=142 Identities=35% Similarity=0.441 Sum_probs=126.7
Q ss_pred cceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEec-CCCHHHHHHHHH
Q 039253 3 WSIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIP-LPVEKSRLQIFK 78 (199)
Q Consensus 3 ~sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~-~P~~~~R~~il~ 78 (199)
++++++|... .+....+++++||++|||+.+..+|+||+|||+|+.||||++||||||++|+|| +|+.++|..||+
T Consensus 275 D~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 275 DSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp HHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHH
T ss_pred hhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHH
Confidence 3677888544 344567899999999999999999999999999999999999999999999996 899999999999
Q ss_pred HhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHh-c
Q 039253 79 ACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKY-A 157 (199)
Q Consensus 79 ~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~-~ 157 (199)
.+++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..|+++||..|+.. +
T Consensus 355 ~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~-------------------~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 355 TIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-------------------YVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHHS
T ss_pred HHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-------------------CCCCHHHHHHHHHHhh
Confidence 999999988899999999999999999999999999999988652 56999999999976 5
Q ss_pred cccccc
Q 039253 158 CKSQSR 163 (199)
Q Consensus 158 ~Ps~~r 163 (199)
+++...
T Consensus 416 ~~~~~~ 421 (428)
T 4b4t_K 416 KTDNTV 421 (428)
T ss_dssp CSCCCS
T ss_pred CccCCc
Confidence 555543
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-29 Score=226.20 Aligned_cols=142 Identities=26% Similarity=0.430 Sum_probs=128.5
Q ss_pred cceeeccCCCCCc---hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 3 WSIVIQRGSGAGG---AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 3 ~sl~~~R~~~~~~---~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
++++++|+...++ ...+++++||++||++....+|+||+|||+|+.||+|++||||||++|+|++|+.++|.+||+.
T Consensus 312 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH
T ss_pred ccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH
Confidence 4688888765433 3557899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 80 CLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 80 ~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+++++++..++++..||+.|+|||||||+++|++|++.|+++.. ..++++||..|++++.+
T Consensus 392 ~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~-------------------~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 392 HSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-------------------KVATEKDFLKAVDKVIS 452 (467)
T ss_dssp HHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC-------------------SSBCHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CccCHHHHHHHHHHHhc
Confidence 99999998899999999999999999999999999999988752 56899999999999877
Q ss_pred cccc
Q 039253 160 SQSR 163 (199)
Q Consensus 160 s~~r 163 (199)
+..+
T Consensus 453 g~~k 456 (467)
T 4b4t_H 453 GYKK 456 (467)
T ss_dssp HHCC
T ss_pred Cccc
Confidence 6543
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.94 E-value=4.6e-27 Score=222.31 Aligned_cols=162 Identities=31% Similarity=0.442 Sum_probs=141.6
Q ss_pred cceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 3 WSIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 3 ~sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++|+++|++..++..++++++||++||++....+|+||+|||+|+.||+|++||||||++|++++|+.++|.+||+.+++
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 47899999888888999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 83 KSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 83 ~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
+.++..++++..||.+|+||+|+||+.+|++|++.|+++........ .............++.+||..|++.++|+++
T Consensus 387 ~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~--~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 387 NMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE--DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp SSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT--CCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred CCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc--ccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 99888899999999999999999999999999999999876432111 1111112223466899999999999999999
Q ss_pred ccCC
Q 039253 163 RGFG 166 (199)
Q Consensus 163 r~~~ 166 (199)
++..
T Consensus 465 r~~~ 468 (806)
T 3cf2_A 465 RETV 468 (806)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8653
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=189.06 Aligned_cols=152 Identities=39% Similarity=0.653 Sum_probs=117.4
Q ss_pred eeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC-
Q 039253 5 IVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK- 83 (199)
Q Consensus 5 l~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~- 83 (199)
+++.|+....+...+++++++.+|++......++++++||+|+.||++++||||||+.|++++|+.++|.+||+.+++.
T Consensus 115 ~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~ 194 (274)
T 2x8a_A 115 LCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG 194 (274)
T ss_dssp TCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT
T ss_pred hhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc
Confidence 3444544333445688999999999998888899999999999999999999999999999999999999999999954
Q ss_pred --CCCCCcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 84 --SPVSKDVDLEKLAQFT--QGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 84 --~~~~~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
.++..++++..+|..| +||||+||.++|++|++.|+++....... ........|+++||+.|++.++|
T Consensus 195 ~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~--------~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 195 TKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS--------GNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp BTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-------------------CCBCHHHHHHHHTTCCC
T ss_pred cCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc--------cccccCCeecHHHHHHHHHHhcC
Confidence 3455789999999975 49999999999999999999876432110 00112257999999999999999
Q ss_pred ccccc
Q 039253 160 SQSRG 164 (199)
Q Consensus 160 s~~r~ 164 (199)
|.+++
T Consensus 267 s~~~~ 271 (274)
T 2x8a_A 267 SISKK 271 (274)
T ss_dssp CC---
T ss_pred CCChh
Confidence 98764
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=1.3e-22 Score=171.93 Aligned_cols=150 Identities=69% Similarity=1.077 Sum_probs=124.5
Q ss_pred chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHH
Q 039253 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEK 94 (199)
Q Consensus 15 ~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~ 94 (199)
+...+++++||..|+++....+|+||+|||+++.||++++|+|||+..|+|++|+.++|.+||+.++++.++..++++..
T Consensus 133 ~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~ 212 (301)
T 3cf0_A 133 GAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEF 212 (301)
T ss_dssp CSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHH
T ss_pred hHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHH
Confidence 45678999999999999888889999999999999999999999999999999999999999999999888777899999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCC--Cc----chhhccccccHHHHHHHHHhcccccccc
Q 039253 95 LAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQ--PE----AIEDEVAEIKAEHFEESMKYACKSQSRG 164 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~--~~----~~~~~~~~it~~df~~Al~~~~Ps~~r~ 164 (199)
++..|+||+|+||+++|++|++.|+++.+........... .. ........|+.+||..||+.++||.+..
T Consensus 213 la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~ 288 (301)
T 3cf0_A 213 LAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDN 288 (301)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999887643221100000 00 0012235799999999999999998863
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.89 E-value=6.6e-23 Score=175.72 Aligned_cols=159 Identities=27% Similarity=0.384 Sum_probs=130.5
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCC-CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLS-AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~-~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+++++|+...++...+++++|+.+|+++. ...+|+||+|||+|+.+|++++| ||+..+++++|+.++|.+||+.+++
T Consensus 116 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 116 SLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLG 193 (322)
T ss_dssp GGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred HhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHh
Confidence 56777877777788999999999999986 35789999999999999999999 9999999999999999999999998
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhc----CC-----------------------C
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRK----GK-----------------------Q 134 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~----~~-----------------------~ 134 (199)
+.+.. .+.++..||+.|+||||+||..+|++|++.++++.......... .. .
T Consensus 194 ~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (322)
T 1xwi_A 194 TTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMT 273 (322)
T ss_dssp TCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECC
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhcc
Confidence 87654 67889999999999999999999999999999987643211000 00 0
Q ss_pred Ccc---hhhccccccHHHHHHHHHhcccccccc
Q 039253 135 PEA---IEDEVAEIKAEHFEESMKYACKSQSRG 164 (199)
Q Consensus 135 ~~~---~~~~~~~it~~df~~Al~~~~Ps~~r~ 164 (199)
... ......+|+++||..||+.++||.+.+
T Consensus 274 ~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~ 306 (322)
T 1xwi_A 274 WMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEH 306 (322)
T ss_dssp GGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHH
T ss_pred ccccccccccCCCcCHHHHHHHHHhCCCCCCHH
Confidence 000 001125799999999999999998863
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=5.2e-22 Score=172.25 Aligned_cols=159 Identities=26% Similarity=0.423 Sum_probs=124.0
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCCC-CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSA-KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~-~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++.++|+...+....++.++||.+|+++.. ..+|+||+|||+|+.||++++| ||+..+++++|+.++|.+||+.++.
T Consensus 154 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 154 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp GGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHh
Confidence 456677776777888999999999999864 5679999999999999999999 9999999999999999999999998
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcC---------------------CCCcc---
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKG---------------------KQPEA--- 137 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~---------------------~~~~~--- 137 (199)
..+.. .+.++..||+.|+||+|+||..+|++|++.|+++........... ..+..
T Consensus 232 ~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 2qp9_X 232 DTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEA 311 (355)
T ss_dssp TSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCG
T ss_pred hCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccc
Confidence 87653 578899999999999999999999999999999875431100000 00000
Q ss_pred hhhccccccHHHHHHHHHhcccccccc
Q 039253 138 IEDEVAEIKAEHFEESMKYACKSQSRG 164 (199)
Q Consensus 138 ~~~~~~~it~~df~~Al~~~~Ps~~r~ 164 (199)
......+|+++||..||+.++||++++
T Consensus 312 ~~~~~~~v~~~df~~Al~~~~ps~~~~ 338 (355)
T 2qp9_X 312 DELKEPDLTIKDFLKAIKSTRPTVNED 338 (355)
T ss_dssp GGBCCCCBCHHHHHHHHHHSCCSSCHH
T ss_pred cccccCCccHHHHHHHHHHcCCCCCHH
Confidence 011235699999999999999999864
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=5.4e-22 Score=169.54 Aligned_cols=159 Identities=27% Similarity=0.452 Sum_probs=125.9
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCC-CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLS-AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~-~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++.++|+...+....++.++|+..|+++. ...+|+||+|||+|+.||++++| ||+..+++++|+.++|.+||+.++.
T Consensus 121 ~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 121 ALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp GGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhc
Confidence 46677776677778899999999999985 55779999999999999999999 9999999999999999999999998
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcC----C--C------------------Ccc
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKG----K--Q------------------PEA 137 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~----~--~------------------~~~ 137 (199)
+.+.. .+.++..|++.|+||+|+||..+|++|++.++++........... . . ...
T Consensus 199 ~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (322)
T 3eie_A 199 DTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEA 278 (322)
T ss_dssp TCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCS
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccc
Confidence 87654 678899999999999999999999999999999986532110000 0 0 000
Q ss_pred hhhccccccHHHHHHHHHhcccccccc
Q 039253 138 IEDEVAEIKAEHFEESMKYACKSQSRG 164 (199)
Q Consensus 138 ~~~~~~~it~~df~~Al~~~~Ps~~r~ 164 (199)
......+||++||..|++.++||++.+
T Consensus 279 ~~~~~~~it~~df~~al~~~~ps~~~~ 305 (322)
T 3eie_A 279 DELKEPDLTIKDFLKAIKSTRPTVNED 305 (322)
T ss_dssp SCBCCCCCCHHHHHHHHHHSCCSSCTT
T ss_pred ccccCCCCCHHHHHHHHHhcCCCCCHH
Confidence 011225799999999999999999864
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.86 E-value=8.8e-22 Score=175.60 Aligned_cols=158 Identities=27% Similarity=0.381 Sum_probs=129.5
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCCC-CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSA-KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~-~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
+++++|+...++...+++++||..|+++.. ..+|+||+|||+|+.||++++| ||+..+++++|+.++|..||+.++.
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 238 SLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp TTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHh
Confidence 466777777777888999999999999864 5779999999999999999999 9999999999999999999999998
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCC---------------------------C
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGK---------------------------Q 134 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~---------------------------~ 134 (199)
..+.. .+.++..||..|+||||+||..+|++|++.|+++............ .
T Consensus 316 ~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (444)
T 2zan_A 316 STQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMT 395 (444)
T ss_dssp TSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECC
T ss_pred cCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcc
Confidence 87653 6788999999999999999999999999999999865321110000 0
Q ss_pred Ccc---hhhccccccHHHHHHHHHhccccccc
Q 039253 135 PEA---IEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 135 ~~~---~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
+.. ......+||++||..||+.++||++.
T Consensus 396 ~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~ 427 (444)
T 2zan_A 396 WMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNE 427 (444)
T ss_dssp TTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCH
T ss_pred cccCchhhccCCccCHHHHHHHHHhCCCCCCH
Confidence 000 00112579999999999999999875
No 15
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.86 E-value=1.4e-21 Score=176.50 Aligned_cols=173 Identities=30% Similarity=0.425 Sum_probs=136.0
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
+++++|+...++...++.++||..|+++....+|+||+|||+++.||++++|+|||+..|+|++|+.++|.+||+.+++.
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp HHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred hhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 45677776667778899999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 84 SPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 84 ~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
.++..+.++..++..+.||+|+||..+|++|++.++++........ .............++++||..|++.++||++|
T Consensus 388 ~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~--~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~r 465 (489)
T 3hu3_A 388 MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE--DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (489)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTT--CSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHH
T ss_pred CCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccc--ccccchhhcccCcCCHHHHHHHHHhCCchhhh
Confidence 8888888999999999999999999999999999988764211000 00001112233579999999999999999999
Q ss_pred cCCcc---cccchhhhhh
Q 039253 164 GFGDE---FGFCETAVAA 178 (199)
Q Consensus 164 ~~~~~---~~~~~~~~~~ 178 (199)
++.-+ ..|.+.+|-.
T Consensus 466 e~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 466 ETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp GGGC--------------
T ss_pred cccccCCCCCHHHcCCCc
Confidence 76443 6677776643
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.85 E-value=6.6e-21 Score=171.52 Aligned_cols=140 Identities=39% Similarity=0.631 Sum_probs=117.8
Q ss_pred ceeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
+++++|+.+ .+....+++++||..||++....+|+||+|||+++.||++++|||||++.|+|++|+.++|.+||+.+
T Consensus 119 ~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~ 198 (476)
T 2ce7_A 119 AVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIH 198 (476)
T ss_dssp GTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHH
T ss_pred hhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHH
Confidence 455666532 33445688999999999988778899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+++.++..++++..+|..|+||+|+||.++|++|+..|.++.. ..|+.+||..|+.++.+.
T Consensus 199 ~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~-------------------~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 199 TRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR-------------------DKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHHC--
T ss_pred HHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-------------------CeecHHHHHHHHHHHhcC
Confidence 9998888889999999999999999999999999988875431 569999999999998765
Q ss_pred cc
Q 039253 161 QS 162 (199)
Q Consensus 161 ~~ 162 (199)
..
T Consensus 260 ~~ 261 (476)
T 2ce7_A 260 PA 261 (476)
T ss_dssp --
T ss_pred cc
Confidence 43
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.83 E-value=1.5e-19 Score=149.03 Aligned_cols=125 Identities=38% Similarity=0.627 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHH
Q 039253 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKL 95 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~l 95 (199)
...++++++|..|+++....+++||+|||+++.+|++++|+|||++.+++++|+.++|.+||+.++++.++..+.++..+
T Consensus 130 ~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~l 209 (257)
T 1lv7_A 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAII 209 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHH
T ss_pred HHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 34578999999999998888899999999999999999999999999999999999999999999998888888899999
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 96 AQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
+..++||+++||.++|++|+..|.++.. ..|+.+||..|++.+..
T Consensus 210 a~~~~G~~~~dl~~l~~~a~~~a~~~~~-------------------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 210 ARGTPGFSGADLANLVNEAALFAARGNK-------------------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp HHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CcccHHHHHHHHHHHhc
Confidence 9999999999999999999988876532 56999999999998753
No 18
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=4.1e-23 Score=196.18 Aligned_cols=160 Identities=67% Similarity=1.046 Sum_probs=113.4
Q ss_pred ceeeccCCCCC---chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 039253 4 SIVIQRGSGAG---GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKAC 80 (199)
Q Consensus 4 sl~~~R~~~~~---~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~ 80 (199)
++++.|+...+ +...+++++||+.||++....+|+||+|||+|+.||+|++|||||+..|+|++|+.++|.+||+.+
T Consensus 581 ~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 660 (806)
T 1ypw_A 581 SIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKAN 660 (806)
T ss_dssp HHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTT
T ss_pred hhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHH
Confidence 35666665432 356789999999999998888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCC--CC----cchhhccccccHHHHHHHH
Q 039253 81 LRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGK--QP----EAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 81 l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~--~~----~~~~~~~~~it~~df~~Al 154 (199)
+++.++..++++..|++.|.||||+||.++|++|++.|+++.+.......... .. .........|+.+||..|+
T Consensus 661 l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~ 740 (806)
T 1ypw_A 661 LRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAM 740 (806)
T ss_dssp TSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC------------------------CCTTTTTTSSCCCC
T ss_pred hccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHH
Confidence 99998888899999999999999999999999999999988654322111000 00 0112223579999999999
Q ss_pred Hhccccccc
Q 039253 155 KYACKSQSR 163 (199)
Q Consensus 155 ~~~~Ps~~r 163 (199)
+.++||.+.
T Consensus 741 ~~~~~svs~ 749 (806)
T 1ypw_A 741 RFARRSVSD 749 (806)
T ss_dssp CC-------
T ss_pred HhCCCCCCH
Confidence 999999764
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.83 E-value=1.8e-20 Score=169.57 Aligned_cols=154 Identities=39% Similarity=0.573 Sum_probs=128.1
Q ss_pred eeeccCCC---CCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 5 IVIQRGSG---AGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 5 l~~~R~~~---~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+.++|... .+....+.+++||.+|++......+++|++||+|+.||++++|+|||++.|+|++|+.++|.+||+.++
T Consensus 135 l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 135 VGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp TCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 44555432 234456789999999999988788999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 82 RKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 82 ~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
++.++..++++..+|..|+||+|+||+++|++|+..|.++.. ..|+.+||..|+..+.+..
T Consensus 215 ~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~-------------------~~It~~dl~~al~~v~~~~ 275 (499)
T 2dhr_A 215 RGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR-------------------RKITMKDLEEAADRVMMLP 275 (499)
T ss_dssp SSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC-------------------SSCCSHHHHHHHHHHTTCS
T ss_pred hcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CccCHHHHHHHHHHHhccc
Confidence 988888889999999999999999999999999888765431 4699999999999998775
Q ss_pred ccc---CC----cccccchhhhh
Q 039253 162 SRG---FG----DEFGFCETAVA 177 (199)
Q Consensus 162 ~r~---~~----~~~~~~~~~~~ 177 (199)
.+. +. ...-|+|.+.+
T Consensus 276 ~~~~~~~~~~e~~~~a~~e~g~a 298 (499)
T 2dhr_A 276 AKKSLVLSPRDRRITAYHEAGHA 298 (499)
T ss_dssp SSSCCCCCTTHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhhhHHHHHHHH
Confidence 432 11 23456666554
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.81 E-value=2.4e-19 Score=147.50 Aligned_cols=121 Identities=45% Similarity=0.664 Sum_probs=109.7
Q ss_pred chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHH
Q 039253 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEK 94 (199)
Q Consensus 15 ~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~ 94 (199)
....+++++++..|++......++++++||+|+.||++++|+|||++.+++++|+.++|.+||+.+++..++..++++..
T Consensus 133 ~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 212 (254)
T 1ixz_A 133 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 212 (254)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHH
Confidence 34567899999999998877789999999999999999999999999999999999999999999998888878889999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHH
Q 039253 95 LAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al 154 (199)
+|..|+||+|+||+++|++|+..|.++.. ..|+.+||.+|+
T Consensus 213 la~~~~G~~~~dl~~~~~~a~~~a~~~~~-------------------~~I~~~dl~~a~ 253 (254)
T 1ixz_A 213 LAKRTPGFVGADLENLLNEAALLAAREGR-------------------RKITMKDLEEAA 253 (254)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcC-------------------CCcCHHHHHHHh
Confidence 99999999999999999999888865431 469999999886
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.78 E-value=1.4e-18 Score=144.76 Aligned_cols=128 Identities=41% Similarity=0.706 Sum_probs=115.7
Q ss_pred hhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 039253 17 ADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLA 96 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la 96 (199)
..+.+..++..++++....+++||+|||.++.+|++++|+|||+..++++.|+.++|.+||+.++....+..+.++..++
T Consensus 137 ~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~ 216 (285)
T 3h4m_A 137 VQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 45678888999998888889999999999999999999999999999999999999999999999988877788999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 97 QFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
..+.||+|+||..+|+.|...|+.+.. ..|+.+||..|++.+.+....
T Consensus 217 ~~~~g~~~~~i~~l~~~a~~~a~~~~~-------------------~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 217 KMTEGCVGAELKAICTEAGMNAIRELR-------------------DYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHHHHHHCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhcc-------------------CcCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999877642 569999999999998765443
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.78 E-value=2.5e-18 Score=143.51 Aligned_cols=121 Identities=45% Similarity=0.664 Sum_probs=108.9
Q ss_pred chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHH
Q 039253 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEK 94 (199)
Q Consensus 15 ~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~ 94 (199)
....+.+++++..|++......++++++||+|+.||++++|++||++.|+|++|+.++|.+||+.+++...+..++++..
T Consensus 157 ~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 236 (278)
T 1iy2_A 157 DEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLAL 236 (278)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHH
Confidence 34567889999999998777779999999999999999999999999999999999999999999998888778889999
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHH
Q 039253 95 LAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 95 la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al 154 (199)
+|..++||+|+||+++|++|+..|.++.. ..|+.+||.+|+
T Consensus 237 la~~~~G~~~~dl~~l~~~a~~~a~~~~~-------------------~~I~~~dl~~a~ 277 (278)
T 1iy2_A 237 LAKRTPGFVGADLENLLNEAALLAAREGR-------------------RKITMKDLEEAA 277 (278)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------CSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CCcCHHHHHHHh
Confidence 99999999999999999999888765431 469999999886
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.77 E-value=4.8e-19 Score=145.30 Aligned_cols=130 Identities=37% Similarity=0.639 Sum_probs=107.8
Q ss_pred chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcc--cH
Q 039253 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDV--DL 92 (199)
Q Consensus 15 ~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~--~l 92 (199)
....+.++.|+..++++....+++||+|||.++.+|++++|+|||+..++|++|+.++|.+||+.++....+.... .+
T Consensus 124 ~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~ 203 (262)
T 2qz4_A 124 TEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYS 203 (262)
T ss_dssp ---CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHH
T ss_pred hhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHH
Confidence 3455788999999999877788999999999999999999999999999999999999999999999877665333 35
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 93 EKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 93 ~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
..++..+.||+|+||..+|++|+..|.++.. ..|+.+||..|++.+.|+..+
T Consensus 204 ~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~-------------------~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 204 QRLAELTPGFSGADIANICNEAALHAAREGH-------------------TSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHTC---------------------------CCBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC-------------------CCCCHHHHHHHHHHhccChhh
Confidence 7899999999999999999999988876643 569999999999999887654
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=149.22 Aligned_cols=151 Identities=34% Similarity=0.546 Sum_probs=116.5
Q ss_pred eeeccCCCCCchhhHHHHHHHHHHhCCCC--CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 5 IVIQRGSGAGGAADRIPNQLLTEMDGLSA--KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 5 l~~~R~~~~~~~~~r~~~~lL~~ld~~~~--~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++++|+.+.+....++.++||..|+++.. ..+|+||+|||+++.+|++++| ||+..+++++|+.++|.+||+.++.
T Consensus 188 l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 188 LLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp HTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHh
Confidence 45566665666788999999999998753 4679999999999999999999 9999999999999999999999997
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
..... .+.++..|++.|.||+|+||..+|++|+..++++...... .........+|+.+||..|++.++||.
T Consensus 266 ~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-------~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 266 KEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI-------ATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp TSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----------------CCCBCHHHHHHHHHHHGGGC
T ss_pred hcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh-------ccccccccCCcCHHHHHHHHHhcCCCC
Confidence 76443 4667999999999999999999999999998875421100 001112236799999999999999998
Q ss_pred ccc
Q 039253 162 SRG 164 (199)
Q Consensus 162 ~r~ 164 (199)
+..
T Consensus 339 ~~~ 341 (357)
T 3d8b_A 339 SPK 341 (357)
T ss_dssp CCC
T ss_pred CHH
Confidence 764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=1.6e-18 Score=145.34 Aligned_cols=151 Identities=29% Similarity=0.481 Sum_probs=115.9
Q ss_pred eeeccCCCCCchhhHHHHHHHHHHhCCCCC---CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 5 IVIQRGSGAGGAADRIPNQLLTEMDGLSAK---KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 5 l~~~R~~~~~~~~~r~~~~lL~~ld~~~~~---~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
+...|....+....++.++|+..++++... .+++||++||+++.+|++++| ||+..+++++|+.++|..||+.++
T Consensus 125 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 125 LLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp TSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHH
T ss_pred hccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHH
Confidence 445555444555678899999999988653 579999999999999999999 999999999999999999999999
Q ss_pred cCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 82 RKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 82 ~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
.+.... .+..+..+++.|.||+|+||..+|++|+..++++....... .........|+.+||..|++.++||
T Consensus 203 ~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~-------~~~~~~~~~i~~~d~~~a~~~~~~s 275 (297)
T 3b9p_A 203 QKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK-------CLDISAMRAITEQDFHSSLKRIRRS 275 (297)
T ss_dssp GGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC---------------CCCCCCCCHHHHHHHTTSCCCS
T ss_pred HhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc-------cccccccCCcCHHHHHHHHHHcCCC
Confidence 876443 45678999999999999999999999999988764211000 0011122579999999999999999
Q ss_pred cccc
Q 039253 161 QSRG 164 (199)
Q Consensus 161 ~~r~ 164 (199)
...+
T Consensus 276 ~~~~ 279 (297)
T 3b9p_A 276 VAPQ 279 (297)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 8653
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.70 E-value=6.9e-19 Score=145.51 Aligned_cols=128 Identities=34% Similarity=0.640 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHhCCCCC-CCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAK-KTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~-~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la 96 (199)
.+++++|+..|+++... .+|+||+|||.++.+|++++|+|||+..++|++|+.++|.+||+.+++...+..++++..++
T Consensus 132 ~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la 211 (268)
T 2r62_A 132 EQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVA 211 (268)
T ss_dssp CSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTT
T ss_pred HHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHH
Confidence 45678899999887643 45999999999999999999999999999999999999999999999988877788899999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccccccc
Q 039253 97 QFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSRG 164 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r~ 164 (199)
..+.||+|+||.++|++|+..|..+. ...|+.+||..|++.+.|+..+.
T Consensus 212 ~~~~g~~g~dl~~l~~~a~~~a~~~~-------------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 212 KLTAGLAGADLANIINEAALLAGRNN-------------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp SSSCSSCHHHHHHHHHHHHHTTSSSC-------------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhc-------------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 99999999999999999987764432 15699999999999999988764
No 27
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-17 Score=115.22 Aligned_cols=78 Identities=29% Similarity=0.467 Sum_probs=71.9
Q ss_pred EecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccc
Q 039253 64 YIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVA 143 (199)
Q Consensus 64 ~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (199)
.-.+|+.++|++||+.++++.++..++++..||+.|+|||||||+++|++|++.|+++.. .
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~-------------------~ 67 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-------------------V 67 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-------------------S
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-------------------C
Confidence 346899999999999999999888899999999999999999999999999999998752 6
Q ss_pred cccHHHHHHHHHhcccc
Q 039253 144 EIKAEHFEESMKYACKS 160 (199)
Q Consensus 144 ~it~~df~~Al~~~~Ps 160 (199)
.|+++||..|+++++|.
T Consensus 68 ~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 68 HVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp EECHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHccC
Confidence 79999999999999885
No 28
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=111.79 Aligned_cols=76 Identities=32% Similarity=0.528 Sum_probs=69.6
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccc
Q 039253 66 PLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEI 145 (199)
Q Consensus 66 ~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i 145 (199)
|+|+.++|.+||+.+++++++..++++..||+.|+||||+||.++|++|++.|+++.. ..|
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-------------------~~i 61 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR-------------------VHV 61 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------------------SEE
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-------------------CCC
Confidence 6899999999999999999888899999999999999999999999999999998752 579
Q ss_pred cHHHHHHHHHhcccc
Q 039253 146 KAEHFEESMKYACKS 160 (199)
Q Consensus 146 t~~df~~Al~~~~Ps 160 (199)
+++||..|++++..+
T Consensus 62 ~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 62 TQEDFEMAVAKVMQK 76 (78)
T ss_dssp CHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999988653
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=138.17 Aligned_cols=150 Identities=32% Similarity=0.552 Sum_probs=115.7
Q ss_pred eeeccCCCCCchhhHHHHHHHHHHhCCCC--CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 5 IVIQRGSGAGGAADRIPNQLLTEMDGLSA--KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 5 l~~~R~~~~~~~~~r~~~~lL~~ld~~~~--~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
++..|....+....++.++|+..|+++.. ..+|+||+|||+++.||++++| ||+..++|++|+.++|.+||+.++.
T Consensus 219 l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 219 LLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp GC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHH
Confidence 45566666666788999999999998865 4679999999999999999999 9999999999999999999999997
Q ss_pred CCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 83 KSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 83 ~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
..... .+.++..|+..+.||++++|..+|+.|+..++++...... ..........|+.+||..+++.++|+.
T Consensus 297 ~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~-------~~~~~~~~~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 297 KQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQV-------KNMSASEMRNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp TSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC----------CCSSSCCCCCCHHHHHHHHHHCCCSS
T ss_pred hcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhh-------hccchhhcCCcCHHHHHHHHHHcCCCC
Confidence 75443 4567899999999999999999999999998876421100 001112235799999999999999997
Q ss_pred cc
Q 039253 162 SR 163 (199)
Q Consensus 162 ~r 163 (199)
..
T Consensus 370 ~~ 371 (389)
T 3vfd_A 370 SP 371 (389)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 30
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.65 E-value=1.2e-16 Score=111.08 Aligned_cols=75 Identities=32% Similarity=0.404 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHH
Q 039253 69 VEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAE 148 (199)
Q Consensus 69 ~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 148 (199)
|.++|.+||+.+++++++..++++..||+.|+|||||||.++|++|++.|+++.. ..|+++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~-------------------~~i~~~ 62 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENR-------------------YIVLAK 62 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC-------------------SSBCHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------------------CCcCHH
Confidence 6789999999999999988899999999999999999999999999999987652 679999
Q ss_pred HHHHHHHhcccccc
Q 039253 149 HFEESMKYACKSQS 162 (199)
Q Consensus 149 df~~Al~~~~Ps~~ 162 (199)
||..|+++++|+.+
T Consensus 63 df~~Al~~~~ps~~ 76 (83)
T 3aji_B 63 DFEKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHccCch
Confidence 99999999999987
No 31
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.64 E-value=2.9e-16 Score=110.64 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHH
Q 039253 69 VEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAE 148 (199)
Q Consensus 69 ~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~ 148 (199)
|.++|.+||+.++++.++..++++..||+.|+|||||||.++|++|++.|+++.. ..|+++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-------------------~~i~~~ 62 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-------------------KVATEK 62 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-------------------SSBCHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-------------------ccCCHH
Confidence 5679999999999999998899999999999999999999999999999998853 569999
Q ss_pred HHHHHHHhccccccc
Q 039253 149 HFEESMKYACKSQSR 163 (199)
Q Consensus 149 df~~Al~~~~Ps~~r 163 (199)
||..|++++.|+..+
T Consensus 63 df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 63 DFLKAVDKVISGYKK 77 (88)
T ss_dssp HHHHHHHHHTC----
T ss_pred HHHHHHHHHhcCccc
Confidence 999999999998765
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.60 E-value=8.6e-15 Score=139.08 Aligned_cols=159 Identities=32% Similarity=0.472 Sum_probs=130.8
Q ss_pred ceeeccCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 4 SIVIQRGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 4 sl~~~R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
+++++|+...+....++.++|+..|+++.....|++|+|||+++.+|+++.|+|||+..+.++.|+.++|.+||+.++.+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 308 AIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp GTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred HhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 35666766666778899999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 84 SPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 84 ~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
..+..+.++..++..+.||+++|+..+|.+|++.++++.......... ...........++.+||..++....|+..+
T Consensus 388 ~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~--~~~~~~~~~~~v~~~d~~~al~~~~~s~~~ 465 (806)
T 1ypw_A 388 MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE--TIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp SCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHH--HCCHHHHTTCCCCTTHHHHHHHHSCCCCCC
T ss_pred CCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhh--ccchhhhhhhhhhhhhhhccccccCchhhh
Confidence 988888899999999999999999999999999887764321000000 000011223568899999999999998876
Q ss_pred c
Q 039253 164 G 164 (199)
Q Consensus 164 ~ 164 (199)
.
T Consensus 466 ~ 466 (806)
T 1ypw_A 466 E 466 (806)
T ss_dssp C
T ss_pred h
Confidence 4
No 33
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.51 E-value=3.7e-15 Score=103.42 Aligned_cols=75 Identities=25% Similarity=0.264 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHH
Q 039253 71 KSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHF 150 (199)
Q Consensus 71 ~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df 150 (199)
++|.+||+.+++++++..++++..||+.|+|||||||.++|++|++.|+++.. ..|+++||
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-------------------~~i~~~df 61 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-------------------YVILQSDL 61 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-------------------SEECHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-------------------CCcCHHHH
Confidence 47999999999999888889999999999999999999999999999998752 56999999
Q ss_pred HHHHHhcc-cccccc
Q 039253 151 EESMKYAC-KSQSRG 164 (199)
Q Consensus 151 ~~Al~~~~-Ps~~r~ 164 (199)
..|++++. |+....
T Consensus 62 ~~Al~~v~~~~~~~~ 76 (82)
T 2dzn_B 62 EEAYATQVKTDNTVD 76 (82)
T ss_dssp HHHHHTTCC------
T ss_pred HHHHHHHHcCcCChH
Confidence 99999984 665543
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.35 E-value=1e-12 Score=110.75 Aligned_cols=88 Identities=18% Similarity=0.371 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC
Q 039253 16 AADRIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS 84 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~ 84 (199)
...++.+.|++.||+.. ...+|+||+|||+++.||++++|+|||++.|+ +|+.++|.+|++.++...
T Consensus 124 ~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~ 201 (293)
T 3t15_A 124 NNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD 201 (293)
T ss_dssp CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC
Confidence 34567899999998553 45679999999999999999999999999997 579999999999888643
Q ss_pred CCCCcccHHHHHhhCCCCCHHHHHH
Q 039253 85 PVSKDVDLEKLAQFTQGFSGADITE 109 (199)
Q Consensus 85 ~~~~~~~l~~la~~t~G~sgaDI~~ 109 (199)
++++..+++.++||++++|..
T Consensus 202 ----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 202 ----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp ----CCCHHHHHHHHHHSCSCCHHH
T ss_pred ----CCCHHHHHHHhCCCCcccHHH
Confidence 567899999999999999964
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.76 E-value=3.5e-11 Score=107.18 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=55.5
Q ss_pred HHHHHHHHHHh--CCCCCCCEEEEEeeCCCCCCCccccCCCccce--EEEecCCC--HHHHHHHHHHhhcCCCCCCcccH
Q 039253 19 RIPNQLLTEMD--GLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQ--LIYIPLPV--EKSRLQIFKACLRKSPVSKDVDL 92 (199)
Q Consensus 19 r~~~~lL~~ld--~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~--~i~~~~P~--~~~R~~il~~~l~~~~~~~~~~l 92 (199)
++.++++.+|+ ++...+.|+|++|||+++.+|++++|+||||+ .++++.|+ .++|.+|++.+.. .++
T Consensus 171 ~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl 243 (456)
T 2c9o_A 171 KLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDL 243 (456)
T ss_dssp EECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHH
T ss_pred hhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHH
Confidence 44556777776 44444557777999999999999999999999 67778884 4788888876653 278
Q ss_pred HHHHhhCCCCCHHHHHHHHHH
Q 039253 93 EKLAQFTQGFSGADITEICQR 113 (199)
Q Consensus 93 ~~la~~t~G~sgaDI~~lv~~ 113 (199)
+.++..|+| |+||.++|..
T Consensus 244 ~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 244 DVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHTC-----------------
T ss_pred HHHHHhCCC--hhHHHHHHhh
Confidence 999999999 9999999954
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.70 E-value=1.6e-09 Score=96.61 Aligned_cols=67 Identities=16% Similarity=0.110 Sum_probs=0.4
Q ss_pred cCCCCCchhhHHHHHHHHHHhCCCCCCCEEEEEe-eCCCCCCCccccCCCccceEEEecCCCHH-HHHHHH
Q 039253 9 RGSGAGGAADRIPNQLLTEMDGLSAKKTIFVIGV-TNRPDIIDPALLRPGRLDQLIYIPLPVEK-SRLQIF 77 (199)
Q Consensus 9 R~~~~~~~~~r~~~~lL~~ld~~~~~~~VvvI~a-TN~~~~lD~al~R~gRfd~~i~~~~P~~~-~R~~il 77 (199)
++...+...++++++||.+||++.+...| +++ ||+|+.||+|++||||||++|++++|+.. .|.+|+
T Consensus 120 ~~~~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 120 RARAEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp C----------------------------------------------------------------------
T ss_pred hccchhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 44445566789999999999999776655 455 99999999999999999999999999987 788875
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=1.5e-07 Score=80.22 Aligned_cols=115 Identities=14% Similarity=0.105 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEee-----------CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVT-----------NRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS 87 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aT-----------N~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~ 87 (199)
...+.|+..++.. ..+++++++. |.++.+++++++ ||.. ++|++|+.+++.+|++..+......
T Consensus 204 ~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~ 278 (368)
T 3uk6_A 204 ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVE 278 (368)
T ss_dssp HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCC
Confidence 3455566666532 3345555443 358899999999 9977 8999999999999999988764433
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 88 -KDVDLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 88 -~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
++..+..|++.+.|.+++++.++|+.|...|..+.. ..|+.+|+..|+..+
T Consensus 279 ~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~-------------------~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 279 MSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG-------------------TEVQVDDIKRVYSLF 330 (368)
T ss_dssp BCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC-------------------CCCCHHHHHHHHHHh
Confidence 344578899999878999999999999888765432 579999999999884
No 38
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.57 E-value=7.5e-08 Score=80.27 Aligned_cols=105 Identities=14% Similarity=0.121 Sum_probs=81.7
Q ss_pred hhhHHHHHHHHHHhCCCCCCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-Cc
Q 039253 16 AADRIPNQLLTEMDGLSAKKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KD 89 (199)
Q Consensus 16 ~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~ 89 (199)
....+.+.|+..|+. ...++++|++||.++ .++|++++ ||+..++|+.|+.+++..|++.++...... ++
T Consensus 151 ~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~ 226 (309)
T 3syl_A 151 YGQEAIEILLQVMEN--NRDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTP 226 (309)
T ss_dssp CTHHHHHHHHHHHHH--CTTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECH
T ss_pred ccHHHHHHHHHHHhc--CCCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCH
Confidence 345788999999985 345788999998654 36899999 999999999999999999999999866543 23
Q ss_pred ccHHHHHhh-------CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 039253 90 VDLEKLAQF-------TQGFSGADITEICQRACKDATREEIE 124 (199)
Q Consensus 90 ~~l~~la~~-------t~G~sgaDI~~lv~~A~~~a~~~~~~ 124 (199)
..+..++.. ...-.++++.++++.|...+..+...
T Consensus 227 ~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 227 EAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 345556554 22234899999999999888777654
No 39
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.50 E-value=7.7e-07 Score=75.18 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHhCCCC----------------CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 18 DRIPNQLLTEMDGLSA----------------KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~----------------~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
..+.+.|+..|+...- ..++++|++||+...+++++++ ||+..++|+.|+.+++..+++.++
T Consensus 120 ~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 120 PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAA 197 (338)
T ss_dssp HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHH
Confidence 3566777877775421 1248999999999999999999 999999999999999999999998
Q ss_pred cCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 039253 82 RKSPVS-KDVDLEKLAQFTQGFSGADITEICQRACKDAT 119 (199)
Q Consensus 82 ~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a~ 119 (199)
...... ++..+..|+..+.| ..+++.++++.+...+.
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 198 LKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFAD 235 (338)
T ss_dssp HHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHH
Confidence 766543 34457778886665 56888888888765543
No 40
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.33 E-value=9.7e-07 Score=70.05 Aligned_cols=112 Identities=9% Similarity=0.139 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCCCCCCE-EEEEeeCCCC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHH
Q 039253 21 PNQLLTEMDGLSAKKTI-FVIGVTNRPD---IIDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLE 93 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~V-vvI~aTN~~~---~lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~ 93 (199)
...|+..++.......+ +|+.++..+. .+++++.+ ||. ..++++.|+.+++.++++.++...... ++..+.
T Consensus 123 ~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 200 (242)
T 3bos_A 123 EEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGR 200 (242)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34455555544333344 4444444454 56688998 887 999999999999999999998754432 344577
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 94 KLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 94 ~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
.+++.+.| +.+++.++++.+...+..+. ..|+.+++.++++
T Consensus 201 ~l~~~~~g-~~r~l~~~l~~~~~~a~~~~--------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 201 FLLNRMAR-DLRTLFDVLDRLDKASMVHQ--------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHTTT-CHHHHHHHHHHHHHHHHHHT--------------------CCCCHHHHHHHHT
T ss_pred HHHHHccC-CHHHHHHHHHHHHHHHHHhC--------------------CCCcHHHHHHHhh
Confidence 88888866 78899999998877664332 5699999988874
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.31 E-value=3e-06 Score=66.48 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.|+..++.. ..++.+|++||.++.+++++++ |+ ..++++.|+.++..++++.++...... ++..+..++
T Consensus 140 ~~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 140 RHSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp HHHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 35667788888743 4578999999999999999998 75 789999999999999999988654332 344578899
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al 154 (199)
+.+.| .++.+.++++.|...+ ...|+.+++.+++
T Consensus 215 ~~~~G-~~~~~~~~~~~~~~~~-----------------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 215 RAAEG-SLRDALSLTDQAIASG-----------------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHTT-CHHHHHHHHHHHHTTT-----------------------TSSBCHHHHHHHS
T ss_pred HHcCC-CHHHHHHHHHHHHhcc-----------------------CceecHHHHHHHh
Confidence 99987 7888888888773221 0368999998875
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.31 E-value=1.3e-06 Score=73.02 Aligned_cols=80 Identities=19% Similarity=0.161 Sum_probs=66.2
Q ss_pred CEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
++++|++||.+..+++++++ ||+..+.++.|+.+++..+++.++...... ++..+..|+..+.|+ ++.+.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGT-MRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSC-HHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCC-HHHHHHHHHHH
Confidence 58899999999999999999 999999999999999999999998765443 344578888888765 57888888776
Q ss_pred HHHH
Q 039253 115 CKDA 118 (199)
Q Consensus 115 ~~~a 118 (199)
...+
T Consensus 215 ~~~a 218 (324)
T 1hqc_A 215 RDFA 218 (324)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 5443
No 43
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.31 E-value=3e-07 Score=83.66 Aligned_cols=123 Identities=14% Similarity=0.230 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCCCC-------------CCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc----
Q 039253 20 IPNQLLTEMDGLSA-------------KKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR---- 82 (199)
Q Consensus 20 ~~~~lL~~ld~~~~-------------~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~---- 82 (199)
..+.||..||.... ..++++|+|||.++.+|++|++ ||+ .|+|+.|+.++|..|++.++.
T Consensus 195 ~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~ 271 (543)
T 3m6a_A 195 PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQI 271 (543)
T ss_dssp ---CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 44667777764321 1568999999999999999999 995 799999999999999999872
Q ss_pred -CCCCC------CcccHHHHHhhCCC-CCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHH
Q 039253 83 -KSPVS------KDVDLEKLAQFTQG-FSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 83 -~~~~~------~~~~l~~la~~t~G-~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al 154 (199)
...+. ++..+..++....+ ...++|++.+..++..+..+..... .....|+.+++..++
T Consensus 272 ~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~-------------~~~~~It~~~l~~~L 338 (543)
T 3m6a_A 272 KEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE-------------RKRITVTEKNLQDFI 338 (543)
T ss_dssp HHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC-------------CSCCEECTTTTHHHH
T ss_pred HHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC-------------CcceecCHHHHHHHh
Confidence 22221 12234555553333 4557777777766666555543211 112468999999988
Q ss_pred Hhcc
Q 039253 155 KYAC 158 (199)
Q Consensus 155 ~~~~ 158 (199)
..-+
T Consensus 339 g~~~ 342 (543)
T 3m6a_A 339 GKRI 342 (543)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 6544
No 44
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.19 E-value=6.9e-06 Score=63.76 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..++.. ..++.+|++||.++.+++++.+ ||. .++++.|+.++...+++.++...... ++..+..+++
T Consensus 117 ~~~~~l~~~l~~~--~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 191 (226)
T 2chg_A 117 DAQAALRRTMEMY--SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIY 191 (226)
T ss_dssp HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456677777753 4567889999999999999999 998 89999999999999999988644332 3445677887
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMK 155 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~ 155 (199)
.+.| ..+.+.++++.++..+ ..|+.+|+.+++.
T Consensus 192 ~~~g-~~r~l~~~l~~~~~~~------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 192 ISGG-DFRKAINALQGAAAIG------------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHTT-CHHHHHHHHHHHHHTC------------------------SCBCHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHhcC------------------------ceecHHHHHHHhc
Confidence 7765 4555555555443221 3589999998875
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.19 E-value=1.2e-05 Score=67.81 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHhCC---------CCCCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC
Q 039253 18 DRIPNQLLTEMDGL---------SAKKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 18 ~r~~~~lL~~ld~~---------~~~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
....+.|+..|+.- ....+++||+|+|..+ .+++++++ ||+.+++++.|+.++|.+||+..+..
T Consensus 123 ~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 123 AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 45677788877742 1234578888888433 39999999 99999999999999999999998865
Q ss_pred C
Q 039253 84 S 84 (199)
Q Consensus 84 ~ 84 (199)
.
T Consensus 201 ~ 201 (331)
T 2r44_A 201 N 201 (331)
T ss_dssp T
T ss_pred C
Confidence 3
No 46
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.17 E-value=2e-06 Score=71.20 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhCCC--------CCCCEEEEEe----eCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh-----
Q 039253 19 RIPNQLLTEMDGLS--------AKKTIFVIGV----TNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL----- 81 (199)
Q Consensus 19 r~~~~lL~~ld~~~--------~~~~VvvI~a----TN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l----- 81 (199)
.+.+.|+..|++.. ...++++|++ ++.+..+++++++ ||+..++|+.|+.+++.+|++...
T Consensus 143 ~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~ 220 (310)
T 1ofh_A 143 GVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTE 220 (310)
T ss_dssp HHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHH
T ss_pred HHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHH
Confidence 35788999998641 2346788888 5688999999999 999999999999999999999422
Q ss_pred ------cCCCC--C-CcccHHHHHhhC-------CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccc
Q 039253 82 ------RKSPV--S-KDVDLEKLAQFT-------QGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEI 145 (199)
Q Consensus 82 ------~~~~~--~-~~~~l~~la~~t-------~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i 145 (199)
..... . ++..+..|++.+ ++...+.+.++++.+...+..+.... ......|
T Consensus 221 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-------------~~~~~~i 287 (310)
T 1ofh_A 221 QYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-------------NGQTVNI 287 (310)
T ss_dssp HHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC-------------TTCEEEE
T ss_pred HHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc-------------cCCEEEE
Confidence 11111 1 233466677665 25788999999988765544322100 0011359
Q ss_pred cHHHHHHHHHhcc
Q 039253 146 KAEHFEESMKYAC 158 (199)
Q Consensus 146 t~~df~~Al~~~~ 158 (199)
+.+++..++....
T Consensus 288 ~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 288 DAAYVADALGEVV 300 (310)
T ss_dssp CHHHHHHHTCSSS
T ss_pred eeHHHHHHHHhhh
Confidence 9999999988653
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.13 E-value=9.7e-06 Score=68.75 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCC---CCCCccccCCCccce-EEEecCCCHHHHHHHHHHhhcC----CCCCCcc
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRP---DIIDPALLRPGRLDQ-LIYIPLPVEKSRLQIFKACLRK----SPVSKDV 90 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~---~~lD~al~R~gRfd~-~i~~~~P~~~~R~~il~~~l~~----~~~~~~~ 90 (199)
.++..++.+++......++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|++..+.. ..+ ++.
T Consensus 150 ~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~ 226 (387)
T 2v1u_A 150 DLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPD 226 (387)
T ss_dssp HHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSS
T ss_pred hHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHH
Confidence 3444555555443215678999999998 889999999 9986 8999999999999999988763 222 234
Q ss_pred cHHHHHhhCC---CCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 91 DLEKLAQFTQ---GFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 91 ~l~~la~~t~---G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
.+..+++.+. | .++.+.++|+.|...+..+. ...|+.+++..|+....
T Consensus 227 ~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~-------------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 227 VVPLCAALAAREHG-DARRALDLLRVAGEIAERRR-------------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTT-------------------CSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcC-------------------CCCcCHHHHHHHHHHHh
Confidence 4677777776 5 46677788888765553321 03466777766666554
No 48
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.13 E-value=1.6e-06 Score=71.29 Aligned_cols=115 Identities=17% Similarity=0.246 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhCCCC-CCCEEEEEeeCCCCCCCc-cccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHH
Q 039253 17 ADRIPNQLLTEMDGLSA-KKTIFVIGVTNRPDIIDP-ALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEK 94 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~~-~~~VvvI~aTN~~~~lD~-al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~ 94 (199)
...+.+.|+..+++... ..+++||+|||.++.+|+ .+++ ||+..|++|.++. |.+|.+.+.....+ .+..+..
T Consensus 147 ~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~ 221 (272)
T 1d2n_A 147 SNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTT 221 (272)
T ss_dssp CHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHH
T ss_pred HHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHH
Confidence 45677788888887643 456899999999999999 5666 9999988865544 33344333332333 3556888
Q ss_pred HHhhCCCC----CHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcccc
Q 039253 95 LAQFTQGF----SGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKS 160 (199)
Q Consensus 95 la~~t~G~----sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps 160 (199)
+++.+.|| ..+++.++++.|...+ .....++|..++.....+
T Consensus 222 l~~~~~g~~~~g~ir~l~~~l~~a~~~~------------------------~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 222 IAQQVKGKKVWIGIKKLLMLIEMSLQMD------------------------PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp HHHHHTTSEEEECHHHHHHHHHHHTTSC------------------------GGGHHHHHHHHHHHTSCC
T ss_pred HHHHhcCCCccccHHHHHHHHHHHhhhc------------------------hHHHHHHHHHHHHHcCCc
Confidence 99999998 5666666666553211 224567777777776554
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.09 E-value=4e-06 Score=74.29 Aligned_cols=115 Identities=15% Similarity=0.139 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEEeeCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCC--CCCCcccHH
Q 039253 21 PNQLLTEMDGLSAKKTIFVIGVTNRPDI---IDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKS--PVSKDVDLE 93 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~VvvI~aTN~~~~---lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~--~~~~~~~l~ 93 (199)
...|+..++.+......+||++.+.+.. +++++++ ||. ..+.++.|+.++|..||+..+... .+. +..+.
T Consensus 213 q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~-~e~l~ 289 (440)
T 2z4s_A 213 QTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP-EEVLN 289 (440)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC-TTHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 3455555554434444555555554554 8899999 997 889999999999999999988643 333 33478
Q ss_pred HHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 94 KLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 94 ~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
.|+..+.| +.+++..+++.+...+.... ..|+.+++.++++...+
T Consensus 290 ~la~~~~g-n~R~l~~~L~~~~~~a~~~~--------------------~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 290 FVAENVDD-NLRRLRGAIIKLLVYKETTG--------------------KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HHHHHCCS-CHHHHHHHHHHHHHHHHHSS--------------------SCCCHHHHHHHTSTTTC
T ss_pred HHHHhcCC-CHHHHHHHHHHHHHHHHHhC--------------------CCCCHHHHHHHHHHHhh
Confidence 89998875 88999999998866654221 45888888888887763
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.07 E-value=1.9e-05 Score=66.52 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhC----CCC-------CCCEEEEEeeCCCC-CCCccccCCCccceEEEecCC-CHHHHHHHHHHhhc---
Q 039253 19 RIPNQLLTEMDG----LSA-------KKTIFVIGVTNRPD-IIDPALLRPGRLDQLIYIPLP-VEKSRLQIFKACLR--- 82 (199)
Q Consensus 19 r~~~~lL~~ld~----~~~-------~~~VvvI~aTN~~~-~lD~al~R~gRfd~~i~~~~P-~~~~R~~il~~~l~--- 82 (199)
...+.|+..|+. +.. ..++++|+|||..+ .+++++++ ||+.+++++.| +.++|.+|++..+.
T Consensus 159 ~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~ 236 (350)
T 1g8p_A 159 HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDA 236 (350)
T ss_dssp HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhccc
Confidence 456677777764 111 13689999999744 89999999 99999999999 67888888876321
Q ss_pred ----------------------------CCCCCCcccHHHHHhhCCC---CCHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Q 039253 83 ----------------------------KSPVSKDVDLEKLAQFTQG---FSGADITEICQRACKDATREEIENDIRRRK 131 (199)
Q Consensus 83 ----------------------------~~~~~~~~~l~~la~~t~G---~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~ 131 (199)
...+. +..+..|+..+.+ -+.+.+.++++.|...|..+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~-------- 307 (350)
T 1g8p_A 237 DPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA-------- 307 (350)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC--------
T ss_pred CchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC--------
Confidence 11222 2223444443332 2567777777777665543321
Q ss_pred CCCCcchhhccccccHHHHHHHHHhcccccc
Q 039253 132 GKQPEAIEDEVAEIKAEHFEESMKYACKSQS 162 (199)
Q Consensus 132 ~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~ 162 (199)
..|+.+|+..|+..+-+...
T Consensus 308 -----------~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 308 -----------TAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp -----------SBCCHHHHHHHHHHHHGGGC
T ss_pred -----------CcCCHHHHHHHHHHHHhhcc
Confidence 45899999999988765544
No 51
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.87 E-value=6.7e-05 Score=63.71 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=78.1
Q ss_pred CEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 36 TIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 36 ~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
.+.++++|+++..|++++++ ||...+.+.+|+.++..+|++......... ++..+..||.++.| +++++..+++.+
T Consensus 150 ~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 46778899999999999999 999999999999999999999887655443 33447889999887 468888888887
Q ss_pred HHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 115 CKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
...|..+.. ..||.+++.+|+....
T Consensus 227 ~~~a~~~~~-------------------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVVKA-------------------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHTC-------------------SSBCHHHHHHHHHHHT
T ss_pred HHHHHHcCC-------------------CCcCHHHHHHHHHHhC
Confidence 666543321 3577777777776653
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.86 E-value=1.2e-05 Score=66.63 Aligned_cols=105 Identities=18% Similarity=0.215 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHhCCC--C-------CCCEEEEEeeCC--------------------------CCCCCccccCCCccceE
Q 039253 18 DRIPNQLLTEMDGLS--A-------KKTIFVIGVTNR--------------------------PDIIDPALLRPGRLDQL 62 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~--~-------~~~VvvI~aTN~--------------------------~~~lD~al~R~gRfd~~ 62 (199)
..+.+.|+..|+.-. . -.++++|+|||. ...++++|+. ||+..
T Consensus 133 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~ 210 (311)
T 4fcw_A 133 PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEI 210 (311)
T ss_dssp HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEE
T ss_pred HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeE
Confidence 356778888887532 0 136889999998 5578999998 99999
Q ss_pred EEecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 039253 63 IYIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQFTQ--GFSGADITEICQRACKDATREEIE 124 (199)
Q Consensus 63 i~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~t~--G~sgaDI~~lv~~A~~~a~~~~~~ 124 (199)
+.+++|+.+++..|++.++... ... ++..+..|++..- ....++|+++++.+...++.+.+.
T Consensus 211 ~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 211 VVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp EECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988642 111 2334667777654 678999999999998888777654
No 53
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.78 E-value=6.7e-05 Score=63.82 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=60.5
Q ss_pred CCEEEEEeeCCC---CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC----CCCCCcccHHHHHhhCCCC--CHH
Q 039253 35 KTIFVIGVTNRP---DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK----SPVSKDVDLEKLAQFTQGF--SGA 105 (199)
Q Consensus 35 ~~VvvI~aTN~~---~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~----~~~~~~~~l~~la~~t~G~--sga 105 (199)
.++.+|++||.+ +.+++++++ ||...++|++|+.++..+|++..+.. ..+. +..+..+++.+.+. ...
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCCCHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccCCHH
Confidence 678999999987 789999999 99889999999999999999998763 2222 33467777777532 234
Q ss_pred HHHHHHHHHHHHH
Q 039253 106 DITEICQRACKDA 118 (199)
Q Consensus 106 DI~~lv~~A~~~a 118 (199)
.+.++|+.|...+
T Consensus 240 ~a~~~l~~a~~~a 252 (384)
T 2qby_B 240 KAVNLLFRAAQLA 252 (384)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 4556666665443
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.77 E-value=4.3e-05 Score=68.06 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=62.6
Q ss_pred CCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHHhhCCCC-
Q 039253 34 KKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS----PVS-KDVDLEKLAQFTQGF- 102 (199)
Q Consensus 34 ~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~l~~la~~t~G~- 102 (199)
...+.+|++||.++ .+|++++| ||.. |.|+.|+.+++..||+.++..+ ... .+..+..++..+.+|
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~ 365 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 45689999999987 79999999 9985 9999999999999999988763 222 334466666665544
Q ss_pred ----CHHHHHHHHHHHHHHH
Q 039253 103 ----SGADITEICQRACKDA 118 (199)
Q Consensus 103 ----sgaDI~~lv~~A~~~a 118 (199)
.+.....+++.|...+
T Consensus 366 ~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 366 SDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp CCSCTTHHHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHHHH
Confidence 4557778888776443
No 55
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.71 E-value=6e-05 Score=69.28 Aligned_cols=121 Identities=15% Similarity=0.101 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhCCC-----------CCCCEEEEEeeCCCC-------------CCCccccCCCccc-eEEEecCCCHHHH
Q 039253 19 RIPNQLLTEMDGLS-----------AKKTIFVIGVTNRPD-------------IIDPALLRPGRLD-QLIYIPLPVEKSR 73 (199)
Q Consensus 19 r~~~~lL~~ld~~~-----------~~~~VvvI~aTN~~~-------------~lD~al~R~gRfd-~~i~~~~P~~~~R 73 (199)
...+.|+..|+.-. -..++.||+|||.++ .|++++++ ||| ..+..+.|+.+ .
T Consensus 406 ~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~ 482 (595)
T 3f9v_A 406 EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-D 482 (595)
T ss_dssp HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-H
T ss_pred hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-H
Confidence 46678888887421 124678999999987 99999999 998 56666778888 8
Q ss_pred HHHHHHhhcCCCCC--------------------------CcccHHHHHhh--------------CCCCCHHHHHHHHHH
Q 039253 74 LQIFKACLRKSPVS--------------------------KDVDLEKLAQF--------------TQGFSGADITEICQR 113 (199)
Q Consensus 74 ~~il~~~l~~~~~~--------------------------~~~~l~~la~~--------------t~G~sgaDI~~lv~~ 113 (199)
..|.++.+...... ++.....|... +.+.|.+.+..+++.
T Consensus 483 ~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirl 562 (595)
T 3f9v_A 483 RELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRI 562 (595)
T ss_dssp HHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHH
T ss_pred HHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHH
Confidence 88888877643210 01111222221 346677777777776
Q ss_pred HHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccccc
Q 039253 114 ACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQ 161 (199)
Q Consensus 114 A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~ 161 (199)
|...|..+.. ..|+.+|+..|+.-++.|.
T Consensus 563 a~a~A~l~~~-------------------~~V~~~dv~~Ai~l~~~sl 591 (595)
T 3f9v_A 563 SEAYAKMALK-------------------AEVTREDAERAINIMRLFL 591 (595)
T ss_dssp HHHHHHTTSS-------------------CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-------------------CCCCHHHHHHHHHHHHHHH
Confidence 6555433321 5699999999998876654
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.71 E-value=8.1e-05 Score=63.23 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhCCCC--CCCEEEEEeeCCC---CCCCccccCCCccce-EEEecCCCHHHHHHHHHHhhcC---CCCCCc
Q 039253 19 RIPNQLLTEMDGLSA--KKTIFVIGVTNRP---DIIDPALLRPGRLDQ-LIYIPLPVEKSRLQIFKACLRK---SPVSKD 89 (199)
Q Consensus 19 r~~~~lL~~ld~~~~--~~~VvvI~aTN~~---~~lD~al~R~gRfd~-~i~~~~P~~~~R~~il~~~l~~---~~~~~~ 89 (199)
.....|+..++.+.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+.. ...-++
T Consensus 140 ~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~ 217 (389)
T 1fnn_A 140 DILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE 217 (389)
T ss_dssp HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCH
T ss_pred HHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCH
Confidence 456666666665432 2578999999988 788999988 8886 8999999999999999988754 111234
Q ss_pred ccHHHHHhhCCCC--------CHHHHHHHHHHHHHHHHH
Q 039253 90 VDLEKLAQFTQGF--------SGADITEICQRACKDATR 120 (199)
Q Consensus 90 ~~l~~la~~t~G~--------sgaDI~~lv~~A~~~a~~ 120 (199)
..+..+++.+.+. .+..+..+|+.|...+..
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~ 256 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQ 256 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4577788888422 467778888888766644
No 57
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=0.0001 Score=62.22 Aligned_cols=96 Identities=20% Similarity=0.217 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCC---CCCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhcC----CCCCCcc
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRP---DIIDPALLRPGRLD-QLIYIPLPVEKSRLQIFKACLRK----SPVSKDV 90 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~---~~lD~al~R~gRfd-~~i~~~~P~~~~R~~il~~~l~~----~~~~~~~ 90 (199)
.+...|+..++.+ ...++.+|++||.+ +.+++.+.+ ||. ..++|++|+.++..+|++..+.. ..+ .+.
T Consensus 147 ~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~ 222 (386)
T 2qby_A 147 DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVL-PDN 222 (386)
T ss_dssp THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCS-CHH
T ss_pred HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCC-CHH
Confidence 4566777777765 45678999999987 578888888 876 59999999999999999987752 222 233
Q ss_pred cHHHHHhhCC---CCCHHHHHHHHHHHHHHHH
Q 039253 91 DLEKLAQFTQ---GFSGADITEICQRACKDAT 119 (199)
Q Consensus 91 ~l~~la~~t~---G~sgaDI~~lv~~A~~~a~ 119 (199)
.+..++..+. | .+..+..+|+.|...+.
T Consensus 223 ~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 223 VIKLCAALAAREHG-DARRALDLLRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 4566777665 4 45566667777765553
No 58
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.68 E-value=0.00013 Score=61.14 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHH
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPD---IIDPALLRPGRLD--QLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKL 95 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~---~lD~al~R~gRfd--~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~l 95 (199)
..|+..++.+......+|+++++.+. .+++++++ ||. ..+++++ +.++|..|++.++...... ++..+..|
T Consensus 118 ~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l 194 (324)
T 1l8q_A 118 IEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYL 194 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 44444544433344567777777766 68999999 997 7789998 9999999999998754433 34457889
Q ss_pred HhhCCCCCHHHHHHHHHHHHHH
Q 039253 96 AQFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 96 a~~t~G~sgaDI~~lv~~A~~~ 117 (199)
+..+ -..+++..++..+...
T Consensus 195 ~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 195 LENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HHHC--SSHHHHHHHHHHHHHH
T ss_pred HHhC--CCHHHHHHHHHHHHHc
Confidence 9988 4678888888877654
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.66 E-value=0.0003 Score=59.50 Aligned_cols=92 Identities=16% Similarity=0.175 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHH
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLA 96 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la 96 (199)
....+.|+..++. ...++++|++|+.+..+++++++ |+ ..+.|+.|+.++...+++.++...... ++..+..++
T Consensus 133 ~~~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~ 207 (373)
T 1jr3_A 133 RHSFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 207 (373)
T ss_dssp HHHHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3456788888875 34578899999999999999998 87 789999999999999999988654433 233477889
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRAC 115 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~ 115 (199)
+.+.| ..+++.++++.+.
T Consensus 208 ~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 208 RAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHSSS-CHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHH
Confidence 98877 6778888887764
No 60
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=0.00029 Score=59.08 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+... ..+.+|++||.++.+++++++ |+. .+.|+.|+.++...+++..+....+. ++..+..|++
T Consensus 148 ~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~ 222 (353)
T 1sxj_D 148 DAQSALRRTMETYS--GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILD 222 (353)
T ss_dssp HHHHHHHHHHHHTT--TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45677888888543 356777889999999999999 986 89999999999999999988654432 3445788888
Q ss_pred hCCCCCHHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRACK 116 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~~ 116 (199)
.+.|. .+.+.++++.+..
T Consensus 223 ~~~G~-~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 223 ISAGD-LRRGITLLQSASK 240 (353)
T ss_dssp HTSSC-HHHHHHHHHHTHH
T ss_pred HcCCC-HHHHHHHHHHHHH
Confidence 88764 4555555555443
No 61
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.60 E-value=0.00016 Score=64.06 Aligned_cols=115 Identities=19% Similarity=0.127 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEe---------eC---CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGV---------TN---RPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP 85 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~a---------TN---~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~ 85 (199)
....+.|+..|+.- ..+++++++ |+ .|..|++.+++ ||.. +.|+.|+.++..++|+..+....
T Consensus 309 ~~a~~aLlk~lEe~--~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~ 383 (456)
T 2c9o_A 309 IECFTYLHRALESS--IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEG 383 (456)
T ss_dssp HHHHHHHHHHTTST--TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcc--CCCEEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhC
Confidence 45788888888853 334544444 22 28899999999 9988 59999999999999998875333
Q ss_pred CC-CcccHHHHHhhC-CCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhc
Q 039253 86 VS-KDVDLEKLAQFT-QGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYA 157 (199)
Q Consensus 86 ~~-~~~~l~~la~~t-~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~ 157 (199)
.. ++..+..++..+ .| +++..-.+++.|...|..+.. ..|+.+|+..|+.-+
T Consensus 384 ~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~~-------------------~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 384 INISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKINGK-------------------DSIEKEHVEEISELF 437 (456)
T ss_dssp CCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcCC-------------------CccCHHHHHHHHHHh
Confidence 22 233466777777 55 788888888887666654331 569999999998775
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.0002 Score=67.25 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=63.2
Q ss_pred CCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCC----C-CcccHHHHHhh-----
Q 039253 34 KKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPV----S-KDVDLEKLAQF----- 98 (199)
Q Consensus 34 ~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~----~-~~~~l~~la~~----- 98 (199)
...+.+|+|||..+ .+|++++| || ..|.|+.|+.+++.+||+.+...+.. . .+..+..++..
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i 365 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYI 365 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSS
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccc
Confidence 55789999999988 79999999 99 56999999999999999988876422 1 22334455543
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRACKDAT 119 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A~~~a~ 119 (199)
++++.+.+...++..|+..+.
T Consensus 366 ~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 366 SDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp CCSCTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCcHHHHHHHHHHHHHH
Confidence 356778888888888765543
No 63
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.52 E-value=0.00024 Score=58.55 Aligned_cols=89 Identities=17% Similarity=0.050 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQF 98 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~ 98 (199)
..+.|+..|+. ...++++|++||.+..+++++.+ |+. .+.|++|+.+++..+++..+...... ++..+..|+..
T Consensus 118 ~~~~L~~~le~--~~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~ 192 (319)
T 2chq_A 118 AQAALRRTMEM--YSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYI 192 (319)
T ss_dssp HHHTTGGGTSS--SSSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHT
T ss_pred HHHHHHHHHHh--cCCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34555555553 23568899999999999999999 886 89999999999999999998766543 34456778876
Q ss_pred CCCCCHHHHHHHHHHH
Q 039253 99 TQGFSGADITEICQRA 114 (199)
Q Consensus 99 t~G~sgaDI~~lv~~A 114 (199)
+.| ..+.+.++++.+
T Consensus 193 ~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 193 SGG-DFRKAINALQGA 207 (319)
T ss_dssp TTT-CHHHHHHHHHHH
T ss_pred cCC-CHHHHHHHHHHH
Confidence 655 344444444443
No 64
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.45 E-value=0.00028 Score=58.40 Aligned_cols=91 Identities=12% Similarity=0.099 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+.. ..++.+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+...... ++..+..|+.
T Consensus 125 ~~~~~L~~~le~~--~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 199 (327)
T 1iqp_A 125 DAQQALRRTMEMF--SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 199 (327)
T ss_dssp HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4567788888753 4567888899999999999998 887 78999999999999999988765543 3445677888
Q ss_pred hCCCCCHHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRAC 115 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A~ 115 (199)
.+.| +.+.+.++++.+.
T Consensus 200 ~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 200 IAEG-DMRRAINILQAAA 216 (327)
T ss_dssp HHTT-CHHHHHHHHHHHH
T ss_pred HCCC-CHHHHHHHHHHHH
Confidence 7765 4555555555543
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.42 E-value=0.00021 Score=66.91 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=76.5
Q ss_pred HHhCCCCCCCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC----CCC-CcccHHHHH
Q 039253 27 EMDGLSAKKTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS----PVS-KDVDLEKLA 96 (199)
Q Consensus 27 ~ld~~~~~~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~~l~~la 96 (199)
.+..+.....+.+|++||.+ ..+|+++.| ||+ .+.|+.|+.++|.+||+.+...+ .+. .+..+..++
T Consensus 306 ~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 306 LIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp HHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 34444455678999999964 468999999 998 69999999999999999887542 111 233456666
Q ss_pred hhCCC-----CCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhcc
Q 039253 97 QFTQG-----FSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYAC 158 (199)
Q Consensus 97 ~~t~G-----~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~ 158 (199)
..+.| +.+..+..++.+|+..+.... .......++.+|+..++..+.
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~---------------~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGARARLMP---------------VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHHHHHHSS---------------SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHhhhhcccccCchHHHHHHHHHHHHHhccc---------------ccccCCccCHHHHHHHHHHhc
Confidence 65544 566778888887754332100 001124588888888887764
No 66
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.38 E-value=0.00066 Score=56.01 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..++. ...++.+|++||.+..+++++.+ |+. .+.|+.|+.++..++++..+...... ++..+..+++
T Consensus 122 ~~~~~L~~~le~--~~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 196 (323)
T 1sxj_B 122 GAQQALRRTMEL--YSNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIF 196 (323)
T ss_dssp HHHHTTHHHHHH--TTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhc--cCCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345667777774 34567888899999999999999 876 89999999999999999887643332 2445677888
Q ss_pred hCCCCCHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRA 114 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A 114 (199)
.+.|- .+.+.++++.+
T Consensus 197 ~~~G~-~r~a~~~l~~~ 212 (323)
T 1sxj_B 197 TAEGD-MRQAINNLQST 212 (323)
T ss_dssp HHTTC-HHHHHHHHHHH
T ss_pred HcCCC-HHHHHHHHHHH
Confidence 77653 44444444443
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.38 E-value=0.00037 Score=65.38 Aligned_cols=105 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHhCCC---------CCCCEEEEEeeCCCCC------------CCccccCCCccceEEEecCCCHHHHHH
Q 039253 17 ADRIPNQLLTEMDGLS---------AKKTIFVIGVTNRPDI------------IDPALLRPGRLDQLIYIPLPVEKSRLQ 75 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~~~------------lD~al~R~gRfd~~i~~~~P~~~~R~~ 75 (199)
...+.+.|++.|+.-. ...++++|+|||.+.. ++|+|+. ||+..|.|++|+.+++..
T Consensus 592 ~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~ 669 (758)
T 3pxi_A 592 HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTE 669 (758)
T ss_dssp CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHH
T ss_pred CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHH
Confidence 3467889999998621 1245799999998665 7899998 999999999999999999
Q ss_pred HHHHhhcCC-------CCC---CcccHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 039253 76 IFKACLRKS-------PVS---KDVDLEKLAQF--TQGFSGADITEICQRACKDATREEI 123 (199)
Q Consensus 76 il~~~l~~~-------~~~---~~~~l~~la~~--t~G~sgaDI~~lv~~A~~~a~~~~~ 123 (199)
|++.++..+ ... ++.-+..|++. ...+..++|+++++++...++.+.+
T Consensus 670 i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 670 IVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 999888542 111 23346667664 3457788999999998887776665
No 68
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.28 E-value=0.00016 Score=64.24 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=75.2
Q ss_pred HHHHHHHHhCCCCCCCEEEEEee--CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCC-------CC-Ccc
Q 039253 21 PNQLLTEMDGLSAKKTIFVIGVT--NRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSP-------VS-KDV 90 (199)
Q Consensus 21 ~~~lL~~ld~~~~~~~VvvI~aT--N~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~-------~~-~~~ 90 (199)
.+.||..|+. ..+++|++| |....+++++++ |+. .+.|+.|+.+++..+++..+.... .. ++.
T Consensus 123 q~~LL~~le~----~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~ 195 (447)
T 3pvs_A 123 QDAFLPHIED----GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDE 195 (447)
T ss_dssp --CCHHHHHT----TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHH
T ss_pred HHHHHHHHhc----CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHH
Confidence 3456666663 456777777 445689999999 987 677999999999999999987521 11 233
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHhccc
Q 039253 91 DLEKLAQFTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACK 159 (199)
Q Consensus 91 ~l~~la~~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~P 159 (199)
.+..|+..+.| ..+.+.++++.+...+... ......||.+++.+++....+
T Consensus 196 al~~L~~~~~G-d~R~lln~Le~a~~~a~~~-----------------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 196 TRRAIAELVNG-DARRALNTLEMMADMAEVD-----------------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHSCBC-----------------TTSCEECCHHHHHHHHTCCCC
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhcccc-----------------cCCCCccCHHHHHHHHhhhhh
Confidence 46778887655 5677777777665443110 001145788888877766543
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.28 E-value=0.00031 Score=65.76 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhCCC----C-----CCCEEEEEeeCCCC-------------------------CCCccccCCCccceE
Q 039253 17 ADRIPNQLLTEMDGLS----A-----KKTIFVIGVTNRPD-------------------------IIDPALLRPGRLDQL 62 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~----~-----~~~VvvI~aTN~~~-------------------------~lD~al~R~gRfd~~ 62 (199)
...+.+.|++.|+.-. . -.+++||+|||.+. .++|+|+. ||+..
T Consensus 570 ~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~ 647 (758)
T 1r6b_X 570 HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNI 647 (758)
T ss_dssp CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEE
T ss_pred CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcc
Confidence 3468889999998421 0 14688999999854 68899999 99999
Q ss_pred EEecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhhC--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 039253 63 IYIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQFT--QGFSGADITEICQRACKDATREEIE 124 (199)
Q Consensus 63 i~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~t--~G~sgaDI~~lv~~A~~~a~~~~~~ 124 (199)
|.|++|+.+++..|++.++... .+. ++.-+..|++.. ..+..++|..+++.+...++.+.+-
T Consensus 648 i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l 721 (758)
T 1r6b_X 648 IWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELL 721 (758)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHH
T ss_pred eeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988632 111 233456666543 4677899999999998887766543
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.22 E-value=0.001 Score=56.01 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-C-cccHHHHH
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-K-DVDLEKLA 96 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~-~~~l~~la 96 (199)
...+.|+..|+... .++.+|.+||.++.+.+++++ |+ ..+.|++|+.++...+++..+....+. + +..+..|+
T Consensus 149 ~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~ 223 (354)
T 1sxj_E 149 DAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIA 223 (354)
T ss_dssp HHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHH
T ss_pred HHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 45677888887643 357888999999999999999 88 889999999999999999988654433 2 44577888
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 039253 97 QFTQGFSGADITEICQRAC 115 (199)
Q Consensus 97 ~~t~G~sgaDI~~lv~~A~ 115 (199)
+.+.| +.+++.++++.+.
T Consensus 224 ~~~~G-~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 224 QASNG-NLRVSLLMLESMA 241 (354)
T ss_dssp HHHTT-CHHHHHHHHTHHH
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 87755 4555555555443
No 71
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.19 E-value=0.00049 Score=62.00 Aligned_cols=103 Identities=13% Similarity=0.059 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHhCCC--------CCCCEEEEEeeCCCCC---CCccccCCCccceEEEecCCCH-HHHHHHHHHhhcCC
Q 039253 17 ADRIPNQLLTEMDGLS--------AKKTIFVIGVTNRPDI---IDPALLRPGRLDQLIYIPLPVE-KSRLQIFKACLRKS 84 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~--------~~~~VvvI~aTN~~~~---lD~al~R~gRfd~~i~~~~P~~-~~R~~il~~~l~~~ 84 (199)
...+.+.|+..|+.-. .....++|+|||.+.. ..+++++ ||...+++++|+. ++|..|++......
T Consensus 122 ~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~ 199 (500)
T 3nbx_X 122 GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDEN 199 (500)
T ss_dssp CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTT
T ss_pred cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccC
Confidence 3467788999987320 1122357888886332 3459999 9999999999987 78999998765321
Q ss_pred -------------------------CCCCcccHHHHHhh---------CCCCCHHHHHHHHHHHHHHHHHHH
Q 039253 85 -------------------------PVSKDVDLEKLAQF---------TQGFSGADITEICQRACKDATREE 122 (199)
Q Consensus 85 -------------------------~~~~~~~l~~la~~---------t~G~sgaDI~~lv~~A~~~a~~~~ 122 (199)
.+. +.-+..++.. ..|.|++.+..+++.|...|..+.
T Consensus 200 ~~~~~~~~~~~~e~l~~~~~~~~~v~v~-d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 200 DNPVPDALQVTDEEYERWQKEIGEITLP-DHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp SCCSCTTTSBCHHHHHHHHHHHTTCBCC-HHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccceecHHHHHHHHhcCCcccCc-hHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 111 1112233322 358899998888887766665443
No 72
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.10 E-value=0.0022 Score=54.60 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHH----hhc-------CCCCC---CcccHHHHHhh--CCCCCHHHHHHHHH
Q 039253 49 IDPALLRPGRLDQLIYIPLPVEKSRLQIFKA----CLR-------KSPVS---KDVDLEKLAQF--TQGFSGADITEICQ 112 (199)
Q Consensus 49 lD~al~R~gRfd~~i~~~~P~~~~R~~il~~----~l~-------~~~~~---~~~~l~~la~~--t~G~sgaDI~~lv~ 112 (199)
+.|+|+. ||+..+.|.+|+.+++.+|+.. ++. ..... ++.-+..|++. ...+.+++|+++++
T Consensus 239 ~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie 316 (363)
T 3hws_A 239 LIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVE 316 (363)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred CCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHH
Confidence 7888888 9999999999999999999987 221 11211 23335666653 34566789999999
Q ss_pred HHHHHHHHHH
Q 039253 113 RACKDATREE 122 (199)
Q Consensus 113 ~A~~~a~~~~ 122 (199)
++...++.+.
T Consensus 317 ~~~~~~l~~~ 326 (363)
T 3hws_A 317 AALLDTMYDL 326 (363)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHHhc
Confidence 9887776544
No 73
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.75 E-value=0.0042 Score=52.47 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQ 97 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~ 97 (199)
....|.||+.|+. +..++++|++||.++.+++++++ |.. .+.|+.|+.++...+++... .+. +..+..++.
T Consensus 122 ~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~ 192 (334)
T 1a5t_A 122 DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALR 192 (334)
T ss_dssp HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHH
Confidence 3457889999984 45578899999999999999999 874 79999999999999998876 222 344667787
Q ss_pred hCCCCCHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQR 113 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~ 113 (199)
.+.| +.+.+.++++.
T Consensus 193 ~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 193 LSAG-SPGAALALFQG 207 (334)
T ss_dssp HTTT-CHHHHHHTTSS
T ss_pred HcCC-CHHHHHHHhcc
Confidence 7765 44444444443
No 74
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.73 E-value=0.0027 Score=52.90 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC-------CCCC-Cc
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK-------SPVS-KD 89 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~-------~~~~-~~ 89 (199)
....+.|+..|+.. ..++.+|++||.+..+++++++ ||. .+.|+.|+.++|.+|++.++.. ..+. ++
T Consensus 120 ~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~ 194 (324)
T 3u61_B 120 AESQRHLRSFMEAY--SSNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD 194 (324)
T ss_dssp HHHHHHHHHHHHHH--GGGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 44567788888754 2457889999999999999999 995 6999999999988776665432 1222 23
Q ss_pred -ccHHHHHhhCCC
Q 039253 90 -VDLEKLAQFTQG 101 (199)
Q Consensus 90 -~~l~~la~~t~G 101 (199)
..+..+++.+.|
T Consensus 195 ~~~~~~l~~~~~g 207 (324)
T 3u61_B 195 MKVVAALVKKNFP 207 (324)
T ss_dssp HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhCCC
Confidence 446777877655
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.60 E-value=0.002 Score=61.33 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHhCCC---------CCCCEEEEEeeCC--------------------------CCCCCccccCCCccce
Q 039253 17 ADRIPNQLLTEMDGLS---------AKKTIFVIGVTNR--------------------------PDIIDPALLRPGRLDQ 61 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~~---------~~~~VvvI~aTN~--------------------------~~~lD~al~R~gRfd~ 61 (199)
...+.+.|++.|+.-. .-.+++||+|||. ...+.|+|+. ||+.
T Consensus 673 ~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~ 750 (854)
T 1qvr_A 673 HPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDE 750 (854)
T ss_dssp CHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSB
T ss_pred CHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCe
Confidence 3468889999998431 0136889999997 2356778887 9999
Q ss_pred EEEecCCCHHHHHHHHHHhhcCC---------CCC-CcccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 039253 62 LIYIPLPVEKSRLQIFKACLRKS---------PVS-KDVDLEKLAQFTQ--GFSGADITEICQRACKDATREEIE 124 (199)
Q Consensus 62 ~i~~~~P~~~~R~~il~~~l~~~---------~~~-~~~~l~~la~~t~--G~sgaDI~~lv~~A~~~a~~~~~~ 124 (199)
.+.|.+|+.++...|++.++... .+. ++.-+..|++..- .+..++|+++++++...++.+.+.
T Consensus 751 ~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 751 IVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp CCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888631 111 2334666777654 678999999999998888777654
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.49 E-value=0.0038 Score=59.38 Aligned_cols=93 Identities=22% Similarity=0.295 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCC----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC----CCC-Ccc
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPD----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS----PVS-KDV 90 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~----~~~-~~~ 90 (199)
+.+.|...++ ..++.+|++||.++ .+|+++.| ||+. |.|+.|+.+++.+||+.++... ... .+.
T Consensus 287 ~~~~L~~~l~----~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~ 359 (854)
T 1qvr_A 287 AGNMLKPALA----RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDS 359 (854)
T ss_dssp -----HHHHH----TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHH
T ss_pred HHHHHHHHHh----CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHH
Confidence 3344454554 35678999999875 58999999 9996 9999999999999999877533 221 233
Q ss_pred cHHHHHhh-----CCCCCHHHHHHHHHHHHHHHH
Q 039253 91 DLEKLAQF-----TQGFSGADITEICQRACKDAT 119 (199)
Q Consensus 91 ~l~~la~~-----t~G~sgaDI~~lv~~A~~~a~ 119 (199)
.+..++.. +.+|.+.....++.+|+..+.
T Consensus 360 al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 360 AIIAAATLSHRYITERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccChHHHHHHHHHHHHHHH
Confidence 45555554 356778888888888765544
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.42 E-value=0.00023 Score=53.69 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=35.6
Q ss_pred CCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHH
Q 039253 35 KTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIF 77 (199)
Q Consensus 35 ~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il 77 (199)
.++.+|++||.++ .+|+++++ ||+ .++++.|+.++|.+||
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 4678899999887 89999999 999 6999999999999876
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.37 E-value=0.011 Score=50.40 Aligned_cols=98 Identities=14% Similarity=0.134 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhCCCC-C--CCEEEEEeeCCCC---CCC---ccccCCCccceEEEecCCCHHHHHHHHHHhhcCC---CC
Q 039253 19 RIPNQLLTEMDGLSA-K--KTIFVIGVTNRPD---IID---PALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS---PV 86 (199)
Q Consensus 19 r~~~~lL~~ld~~~~-~--~~VvvI~aTN~~~---~lD---~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~---~~ 86 (199)
.+...|+..++.+.. . .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+... ..
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~ 236 (412)
T 1w5s_A 159 EDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTV 236 (412)
T ss_dssp HHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS
T ss_pred HHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 345555566654431 3 6788999998765 344 66667 676679999999999999998776421 11
Q ss_pred CCcccHHHHHhhCC------CCCHHHHHHHHHHHHHHHH
Q 039253 87 SKDVDLEKLAQFTQ------GFSGADITEICQRACKDAT 119 (199)
Q Consensus 87 ~~~~~l~~la~~t~------G~sgaDI~~lv~~A~~~a~ 119 (199)
.++..+..+++.+. |. +..+..++..|...+.
T Consensus 237 ~~~~~~~~i~~~~~~~~~~~G~-p~~~~~l~~~a~~~a~ 274 (412)
T 1w5s_A 237 WEPRHLELISDVYGEDKGGDGS-ARRAIVALKMACEMAE 274 (412)
T ss_dssp CCHHHHHHHHHHHCGGGTSCCC-HHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHHHHH
Confidence 12345677888887 64 5677778877765553
No 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.13 E-value=0.022 Score=51.05 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=54.6
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcC--CCCCCcccHHHHHh
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRK--SPVSKDVDLEKLAQ 97 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~--~~~~~~~~l~~la~ 97 (199)
.++.|+..++. ...++++|+++.....+++ + + |+...+.|+.|+.+++.++|+..+.. ..+. +..+..|++
T Consensus 167 ~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~-l-~--~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~~~l~~la~ 239 (516)
T 1sxj_A 167 GVGQLAQFCRK--TSTPLILICNERNLPKMRP-F-D--RVCLDIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQ 239 (516)
T ss_dssp HHHHHHHHHHH--CSSCEEEEESCTTSSTTGG-G-T--TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHH
T ss_pred HHHHHHHHHHh--cCCCEEEEEcCCCCccchh-h-H--hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Confidence 45677777764 3344555555544445544 4 3 56679999999999999999887754 3344 334888888
Q ss_pred hCCCCCHHHHHHHHHHH
Q 039253 98 FTQGFSGADITEICQRA 114 (199)
Q Consensus 98 ~t~G~sgaDI~~lv~~A 114 (199)
.+.| |+..+++..
T Consensus 240 ~s~G----diR~~i~~L 252 (516)
T 1sxj_A 240 TTRG----DIRQVINLL 252 (516)
T ss_dssp HTTT----CHHHHHHHH
T ss_pred HcCC----cHHHHHHHH
Confidence 7754 555555543
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.10 E-value=0.015 Score=61.54 Aligned_cols=78 Identities=21% Similarity=0.350 Sum_probs=57.0
Q ss_pred CEEEEEeeCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCC-CCCCccc--HHHHH-----------
Q 039253 36 TIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKS-PVSKDVD--LEKLA----------- 96 (199)
Q Consensus 36 ~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~-~~~~~~~--l~~la----------- 96 (199)
++.+|+|||.|. .||++|+| || ..++++.|+.+++..|+..++... ...+++. ...|+
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~ 1460 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECK 1460 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999994 89999999 99 889999999999999999888543 2221111 11111
Q ss_pred h------h-CCCCCHHHHHHHHHHHHH
Q 039253 97 Q------F-TQGFSGADITEICQRACK 116 (199)
Q Consensus 97 ~------~-t~G~sgaDI~~lv~~A~~ 116 (199)
+ + ---|+.+||..+++....
T Consensus 1461 ~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1461 ARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp HHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred HHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 1 1 125899999998876543
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.89 E-value=0.014 Score=53.40 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=64.7
Q ss_pred CEEEEEeeCCC--CCCCccccCCCccc---eEEEecC--C-CHHHHHHHHHHhhcCC------CCCCcccHHHHHhhC--
Q 039253 36 TIFVIGVTNRP--DIIDPALLRPGRLD---QLIYIPL--P-VEKSRLQIFKACLRKS------PVSKDVDLEKLAQFT-- 99 (199)
Q Consensus 36 ~VvvI~aTN~~--~~lD~al~R~gRfd---~~i~~~~--P-~~~~R~~il~~~l~~~------~~~~~~~l~~la~~t-- 99 (199)
++.||+|||+. +.++++|++ ||+ ..+.|+. | ..+....+++.+.+.. ..-.+..+..|.+..
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r 329 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQK 329 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhh
Confidence 57899999986 789999999 997 5665543 2 3455666665544321 111233355555433
Q ss_pred -CCC------CHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHHHh
Q 039253 100 -QGF------SGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESMKY 156 (199)
Q Consensus 100 -~G~------sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al~~ 156 (199)
.|- +.++|.++++.|...|..+.. ..|+.+|+..|++.
T Consensus 330 ~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~-------------------~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 330 RAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK-------------------KYVEREDVIEAVKM 374 (604)
T ss_dssp TTCSTTEEECCHHHHHHHHHHHHHHHHHTTC-------------------SSBCHHHHHHHHHH
T ss_pred hhccccccccCHHHHHHHHHHHHHHHHhcCc-------------------ccccHHHHHHHHHh
Confidence 553 789999999998666543221 45788888888754
No 82
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.86 E-value=0.011 Score=50.54 Aligned_cols=91 Identities=13% Similarity=0.191 Sum_probs=58.4
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHH----hhc---------CCCCC-CcccHHHHHhhCC--CCCHHHHHHHHH
Q 039253 49 IDPALLRPGRLDQLIYIPLPVEKSRLQIFKA----CLR---------KSPVS-KDVDLEKLAQFTQ--GFSGADITEICQ 112 (199)
Q Consensus 49 lD~al~R~gRfd~~i~~~~P~~~~R~~il~~----~l~---------~~~~~-~~~~l~~la~~t~--G~sgaDI~~lv~ 112 (199)
+.|+|+. ||+..+.|+.++.++...|+.. ++. ...+. ++.-+..|++... ....+.|.++++
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 5677777 8989999999999999999973 211 11111 2333566666543 467899999999
Q ss_pred HHHHHHHHHHHHHhHHhhcCCCCcchhhccccccHHHHHHHH
Q 039253 113 RACKDATREEIENDIRRRKGKQPEAIEDEVAEIKAEHFEESM 154 (199)
Q Consensus 113 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~Al 154 (199)
.+...++.+..... .....|+.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~-------------~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 334 DFCLDIMFDLPKLK-------------GSEVRITKDCVLKQA 362 (376)
T ss_dssp HHHHHHHHTGGGGT-------------TSEEEECHHHHTTSS
T ss_pred HHHHHHHhhccCCC-------------CCEEEEeHHHhcCCC
Confidence 88777766543110 111457888876543
No 83
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.65 E-value=0.064 Score=47.49 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred HHHHHHHHHhCCC--------CCCCEEEEEee----CCCCCCCccccCCCccceEEEecCCCHHHHHHHHH---Hhh---
Q 039253 20 IPNQLLTEMDGLS--------AKKTIFVIGVT----NRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFK---ACL--- 81 (199)
Q Consensus 20 ~~~~lL~~ld~~~--------~~~~VvvI~aT----N~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~---~~l--- 81 (199)
+-..||..|++-. ..++|++|+|. ++|.++-|.|+. ||+.+|+|+..+.++...|+. .++
T Consensus 278 vq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q 355 (444)
T 1g41_A 278 VQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQ 355 (444)
T ss_dssp HHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHH
T ss_pred HHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHH
Confidence 6678999999741 34678999887 356666688988 999999999999999999993 222
Q ss_pred -----cCCCCC---CcccHHHHHh-------hCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcCCCCcchhhcccccc
Q 039253 82 -----RKSPVS---KDVDLEKLAQ-------FTQGFSGADITEICQRACKDATREEIENDIRRRKGKQPEAIEDEVAEIK 146 (199)
Q Consensus 82 -----~~~~~~---~~~~l~~la~-------~t~G~sgaDI~~lv~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~it 146 (199)
...... .+--+..|++ .|...-++-|+.++..++.....+.... ......|+
T Consensus 356 ~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~-------------~~~~~~i~ 422 (444)
T 1g41_A 356 YKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM-------------NGQTVNID 422 (444)
T ss_dssp HHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGC-------------TTCEEEEC
T ss_pred HHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhcccc-------------CCCeEEEe
Confidence 111111 2233555555 3566777778877777766655443210 01124578
Q ss_pred HHHHHHHHH
Q 039253 147 AEHFEESMK 155 (199)
Q Consensus 147 ~~df~~Al~ 155 (199)
.+.+...+.
T Consensus 423 ~~~v~~~l~ 431 (444)
T 1g41_A 423 AAYVADALG 431 (444)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 777776554
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.053 Score=45.92 Aligned_cols=62 Identities=13% Similarity=0.062 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCC----CCccccCCCccc-eEEEecCCCHHHHHHHHHHhhcC
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDI----IDPALLRPGRLD-QLIYIPLPVEKSRLQIFKACLRK 83 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~----lD~al~R~gRfd-~~i~~~~P~~~~R~~il~~~l~~ 83 (199)
..++..|+.+.. ....+++||+.+|..+. |++++++ ||. .+|.|++++.++-.+|++..+..
T Consensus 147 q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 147 EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 345666666554 24567999999999865 4556677 887 68999999999999999998865
No 85
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.27 E-value=0.034 Score=46.65 Aligned_cols=77 Identities=13% Similarity=0.101 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHh
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQ 97 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~ 97 (199)
...+.|+..|+.. ...+.+|++||.+..+.+++++ |+. .+.|+.++.++...++...+....+. ++..+..++.
T Consensus 125 ~~~~~L~~~le~~--~~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~ 199 (340)
T 1sxj_C 125 AAQNALRRVIERY--TKNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE 199 (340)
T ss_dssp HHHHHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456777777753 3456778889999999999999 886 78899899999999998888543322 2333455555
Q ss_pred hCC
Q 039253 98 FTQ 100 (199)
Q Consensus 98 ~t~ 100 (199)
.+.
T Consensus 200 ~s~ 202 (340)
T 1sxj_C 200 LSN 202 (340)
T ss_dssp HHT
T ss_pred HcC
Confidence 443
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.66 E-value=0.035 Score=46.51 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACL 81 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l 81 (199)
....|.||..|+. +...+++|++|+.++.|.+++++ | .+.|+.|+.++-..+++..+
T Consensus 96 ~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 96 QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 3457889999984 45677888889999999999999 8 89999999999999998876
No 87
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.69 E-value=0.058 Score=44.93 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhCCC---------CCCCEEEEEeeCCC-------CCCCccccCCCccceEEEecCCCHHH----HHHHHH
Q 039253 19 RIPNQLLTEMDGLS---------AKKTIFVIGVTNRP-------DIIDPALLRPGRLDQLIYIPLPVEKS----RLQIFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~-------~~lD~al~R~gRfd~~i~~~~P~~~~----R~~il~ 78 (199)
.+...|+..|+.-. ...++.||+|||.+ ..+++++.. ||. .+.+.+|...+ ...+++
T Consensus 111 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~ 187 (304)
T 1ojl_A 111 LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLAD 187 (304)
T ss_dssp HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHH
T ss_pred HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHH
Confidence 45667888887542 12358899999985 235566666 765 55555565444 444666
Q ss_pred HhhcCC----C---CC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 039253 79 ACLRKS----P---VS-KDVDLEKLAQFTQGFSGADITEICQRACKDA 118 (199)
Q Consensus 79 ~~l~~~----~---~~-~~~~l~~la~~t~G~sgaDI~~lv~~A~~~a 118 (199)
+++... . .. ++..+..|....-.-..++|.++++.|...+
T Consensus 188 ~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 188 HFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 665421 1 11 2223555665542224568888888876543
No 88
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.98 E-value=0.0083 Score=44.86 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=33.0
Q ss_pred HHHHHHHHHhCCCCCCCEEEEEeeCCCC-----CCCccccCCCccceEEEecCCC
Q 039253 20 IPNQLLTEMDGLSAKKTIFVIGVTNRPD-----IIDPALLRPGRLDQLIYIPLPV 69 (199)
Q Consensus 20 ~~~~lL~~ld~~~~~~~VvvI~aTN~~~-----~lD~al~R~gRfd~~i~~~~P~ 69 (199)
+.+.|+..++ ..++++|++||.++ .+|+++++ ||+. ++++.|+
T Consensus 140 ~~~~l~~~~~----~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 140 AGNILKPMLA----RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp THHHHHHHHH----TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred HHHHHHHHHh----cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4445555554 35678999999875 79999999 9995 9999986
No 89
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.81 E-value=0.31 Score=38.98 Aligned_cols=96 Identities=13% Similarity=0.119 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCC---------CCCCEEEEEeeCCC-------CCCCccccCCCccceEEEecCCCH----HHHHHHHH
Q 039253 19 RIPNQLLTEMDGLS---------AKKTIFVIGVTNRP-------DIIDPALLRPGRLDQLIYIPLPVE----KSRLQIFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~~---------~~~~VvvI~aTN~~-------~~lD~al~R~gRfd~~i~~~~P~~----~~R~~il~ 78 (199)
.+...|+..|+.-. ...++.+|+|||.+ ..+++++.. ||.. +.+.+|.. ++...+++
T Consensus 115 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~ 191 (265)
T 2bjv_A 115 MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAE 191 (265)
T ss_dssp HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHH
Confidence 45567777777421 12357899999984 257888988 9864 34445544 34445555
Q ss_pred HhhcC----CCCC-----CcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 039253 79 ACLRK----SPVS-----KDVDLEKLAQFTQGFSGADITEICQRACKD 117 (199)
Q Consensus 79 ~~l~~----~~~~-----~~~~l~~la~~t~G~sgaDI~~lv~~A~~~ 117 (199)
+++.. .... ++..+..|....-.-..++|.++++.+...
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 192 YFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 55432 2211 122234444433223456888888877544
No 90
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=91.15 E-value=0.63 Score=38.74 Aligned_cols=91 Identities=19% Similarity=0.134 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCC------CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCC-Ccc
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRP------DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDV 90 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~------~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~ 90 (199)
....+.|+..++.. ...+++|.+|+.+ ..+-+++.+ |. ..+.|..|+..+....++..+....+. +..
T Consensus 91 ~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~ 165 (343)
T 1jr3_D 91 AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDA 165 (343)
T ss_dssp TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHH
T ss_pred hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 34667888888853 3345555555553 346677776 54 578999999999998998888766544 334
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 039253 91 DLEKLAQFTQGFSGADITEICQRA 114 (199)
Q Consensus 91 ~l~~la~~t~G~sgaDI~~lv~~A 114 (199)
.+..|++.+.| +.+++.+.++..
T Consensus 166 a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 166 ANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp HHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHhch-HHHHHHHHHHHH
Confidence 46677776654 455555555544
No 91
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=85.82 E-value=3.5 Score=36.95 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHhCC----C---CCCCEEEEEeeCCCC-----------CCCccccCCCccceEEE-ecCCCHHHHH---
Q 039253 17 ADRIPNQLLTEMDGL----S---AKKTIFVIGVTNRPD-----------IIDPALLRPGRLDQLIY-IPLPVEKSRL--- 74 (199)
Q Consensus 17 ~~r~~~~lL~~ld~~----~---~~~~VvvI~aTN~~~-----------~lD~al~R~gRfd~~i~-~~~P~~~~R~--- 74 (199)
..++...|+..|+.= . -..++.||+|+|..+ .|+++++. |||-.+. +..|+.+.-.
T Consensus 313 ~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~ 390 (506)
T 3f8t_A 313 PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQD 390 (506)
T ss_dssp CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----------
T ss_pred CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhccc
Confidence 345667788777731 1 124578999999865 88999999 9987554 4566654311
Q ss_pred ------HHHHHhh---c--CC-CCCCcccHHHHH-----------h------hCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 039253 75 ------QIFKACL---R--KS-PVSKDVDLEKLA-----------Q------FTQGFSGADITEICQRACKDATREEIEN 125 (199)
Q Consensus 75 ------~il~~~l---~--~~-~~~~~~~l~~la-----------~------~t~G~sgaDI~~lv~~A~~~a~~~~~~~ 125 (199)
+.++.|. + .. +.-++...+.|. . ..-|.|++.+..+++-|.-.|..+..
T Consensus 391 ~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR-- 468 (506)
T 3f8t_A 391 TEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLS-- 468 (506)
T ss_dssp ---CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCc--
Confidence 2222222 2 11 111111111111 0 24478888888888877666655442
Q ss_pred hHHhhcCCCCcchhhccccccHHHHHHHHHhccccccc
Q 039253 126 DIRRRKGKQPEAIEDEVAEIKAEHFEESMKYACKSQSR 163 (199)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~it~~df~~Al~~~~Ps~~r 163 (199)
..++.+|+..|+.-+.-|...
T Consensus 469 -----------------~~V~~eDV~~Ai~L~~~Sl~~ 489 (506)
T 3f8t_A 469 -----------------DDVEPEDVDIAAELVDWYLET 489 (506)
T ss_dssp -----------------SEECHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHH
Confidence 568999999999888766443
No 92
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=64.31 E-value=4.3 Score=31.46 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=35.6
Q ss_pred HHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecCCCHHHH
Q 039253 24 LLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPLPVEKSR 73 (199)
Q Consensus 24 lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~P~~~~R 73 (199)
++..+.. .....+-+|.+|+.+..||.+++. |++.++++..|....|
T Consensus 112 ll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~~ 158 (199)
T 2r2a_A 112 NVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGMR 158 (199)
T ss_dssp HHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCCE
T ss_pred HHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCcc
Confidence 4555543 334456778889999999999998 9999999998765544
No 93
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=63.35 E-value=0.82 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCCCCEEEEEeeCCCCCCCccccCCCccceEEEecC
Q 039253 22 NQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALLRPGRLDQLIYIPL 67 (199)
Q Consensus 22 ~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~R~gRfd~~i~~~~ 67 (199)
..+...+||. |.|+++||+++.+ +++++|||++..++...
T Consensus 245 ~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 245 DNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4556667753 4578889999999 89999999999887754
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=62.59 E-value=21 Score=28.64 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=46.6
Q ss_pred CEEEEEeeCCCCC---------CCccccCCCccceEEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHH
Q 039253 36 TIFVIGVTNRPDI---------IDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGAD 106 (199)
Q Consensus 36 ~VvvI~aTN~~~~---------lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaD 106 (199)
++.+|+|++.... ....+. ||+...+.+++.+.++-.++++..+.......+ +...+...|.|+...
T Consensus 170 ~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~~- 245 (357)
T 2fna_A 170 RIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPGW- 245 (357)
T ss_dssp TEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHHH-
T ss_pred CeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHHH-
Confidence 5667777764321 112222 477789999999999999999887753222222 237888889887543
Q ss_pred HHHHHH
Q 039253 107 ITEICQ 112 (199)
Q Consensus 107 I~~lv~ 112 (199)
+..++.
T Consensus 246 l~~~~~ 251 (357)
T 2fna_A 246 LTYFGF 251 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 95
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.88 E-value=40 Score=26.92 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=39.2
Q ss_pred CccceEEEecCCCHHHHHHHHHHhhcCCCCC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 039253 57 GRLDQLIYIPLPVEKSRLQIFKACLRKSPVS-KDVDLEKLAQFTQGFSGADITEICQ 112 (199)
Q Consensus 57 gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgaDI~~lv~ 112 (199)
||+...+++++.+.++-.++++..+...... ....+..+...|.|+.. -|..++.
T Consensus 192 ~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 4777889999999999999998877544322 34456778888988754 3544443
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.83 E-value=11 Score=40.95 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=38.7
Q ss_pred CCEEEEEeeCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc
Q 039253 35 KTIFVIGVTNRP-----DIIDPALLRPGRLDQLIYIPLPVEKSRLQIFKACLR 82 (199)
Q Consensus 35 ~~VvvI~aTN~~-----~~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~~l~ 82 (199)
.++.+|+|+|.| ..|+++|+| ||.. +.++.|+.++-..|+..++.
T Consensus 1421 ~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1421 DKIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp SSEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred cCeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 357899999987 569999999 9976 89999999999999877654
No 97
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=57.21 E-value=6.2 Score=33.58 Aligned_cols=97 Identities=16% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhC-----CCCC----CCEEEEEeeCCCCCCCccccCCCccce-------EEEecCCCH----HHHHHHHH
Q 039253 19 RIPNQLLTEMDG-----LSAK----KTIFVIGVTNRPDIIDPALLRPGRLDQ-------LIYIPLPVE----KSRLQIFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~-----~~~~----~~VvvI~aTN~~~~lD~al~R~gRfd~-------~i~~~~P~~----~~R~~il~ 78 (199)
.+-..||..|+. +.+. .+|.+|+|||..- . .+.+.|+|.. .+.+.+|.- ++...+..
T Consensus 246 ~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l--~-~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~ 322 (387)
T 1ny5_A 246 EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI--K-ELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLAN 322 (387)
T ss_dssp HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH--H-HHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH--H-HHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHH
Confidence 455667776663 1111 2578999999631 1 2223344432 233455554 44445555
Q ss_pred HhhcC----CCCC-CcccHHHHHhh-CCCCCHH--HHHHHHHHHHHHH
Q 039253 79 ACLRK----SPVS-KDVDLEKLAQF-TQGFSGA--DITEICQRACKDA 118 (199)
Q Consensus 79 ~~l~~----~~~~-~~~~l~~la~~-t~G~sga--DI~~lv~~A~~~a 118 (199)
+++.+ .... ..+.-..+... ...|.|. +|++++++|+..+
T Consensus 323 ~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 323 HFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp HHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 55532 2211 12332222222 2446664 8999999886643
No 98
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=44.50 E-value=6.9 Score=40.13 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.1
Q ss_pred chhhHHHHHHHHHHhCCCCCCCEEEEEeeCCC-CCCC
Q 039253 15 GAADRIPNQLLTEMDGLSAKKTIFVIGVTNRP-DIID 50 (199)
Q Consensus 15 ~~~~r~~~~lL~~ld~~~~~~~VvvI~aTN~~-~~lD 50 (199)
+...|+++++|..|+++....+|+|| +||+. +.+.
T Consensus 1188 ~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~~~~~~ 1223 (1706)
T 3cmw_A 1188 GLAARMMSQAMRKLAGNLKQSNTLLI-FINQIRMKIG 1223 (1706)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEE-EEECEEECTT
T ss_pred cHHHHHHHHHHHHHHhhhccCCeEEE-Eeccccccch
Confidence 56788999999999998888888888 77874 4443
No 99
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=43.03 E-value=39 Score=30.65 Aligned_cols=54 Identities=17% Similarity=0.253 Sum_probs=43.6
Q ss_pred HHHHHHhCCCCCCCEEEEEeeCCCC--CCCccccCCCccceEEEecCCCHHHHHHHHH
Q 039253 23 QLLTEMDGLSAKKTIFVIGVTNRPD--IIDPALLRPGRLDQLIYIPLPVEKSRLQIFK 78 (199)
Q Consensus 23 ~lL~~ld~~~~~~~VvvI~aTN~~~--~lD~al~R~gRfd~~i~~~~P~~~~R~~il~ 78 (199)
..+..|-......+|-+|++|.+|. .|+..++. -|..+|.+.+.+..+...||-
T Consensus 365 ~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 365 ELIARIAQKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 3444444445667899999999998 89999988 899999999999988887873
No 100
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=35.45 E-value=1.1e+02 Score=21.31 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=50.2
Q ss_pred EEEecCCCHHHHHHHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHHHHHH-------HHHHHHHHHHHHhHHhhcCCC
Q 039253 62 LIYIPLPVEKSRLQIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITEICQR-------ACKDATREEIENDIRRRKGKQ 134 (199)
Q Consensus 62 ~i~~~~P~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~lv~~-------A~~~a~~~~~~~~~~~~~~~~ 134 (199)
.++-..|+..+-..|-+. + ..+|..||..- ||+..||..+-.+ .++..+..-....
T Consensus 16 ~~~~~~~t~~~l~~Ia~~-L-------G~~Wk~LAR~L-Glse~dId~I~~~~p~dl~eq~~qmL~~W~~r~-------- 78 (115)
T 2o71_A 16 HILNSSPSDRQINQLAQR-L-------GPEWEPMVLSL-GLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRF-------- 78 (115)
T ss_dssp CGGGSCCCHHHHHHHHHH-C-------CTTHHHHHHHT-TCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------
T ss_pred hhccCCCCHHHHHHHHHH-H-------hhhHHHHHHHc-CCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--------
Confidence 444477888765555322 2 24799999975 8999999988542 2333333222211
Q ss_pred CcchhhccccccHHHHHHHHHhcc--ccccccCCccccc
Q 039253 135 PEAIEDEVAEIKAEHFEESMKYAC--KSQSRGFGDEFGF 171 (199)
Q Consensus 135 ~~~~~~~~~~it~~df~~Al~~~~--Ps~~r~~~~~~~~ 171 (199)
...-|...+.+||.++. +++.+-+.+++.+
T Consensus 79 -------G~~AT~~~L~~AL~~~~l~~~v~~~~~~~~~~ 110 (115)
T 2o71_A 79 -------GKQATFQSLHNGLRAVEVDPSLLLHMLEELEH 110 (115)
T ss_dssp -------GGGCCHHHHHHHHHHTTCCTHHHHHHTC----
T ss_pred -------CcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 13468889999998864 5555555544443
No 101
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=33.47 E-value=27 Score=21.89 Aligned_cols=16 Identities=38% Similarity=0.256 Sum_probs=13.4
Q ss_pred ccccHHHHHHHHHhcc
Q 039253 143 AEIKAEHFEESMKYAC 158 (199)
Q Consensus 143 ~~it~~df~~Al~~~~ 158 (199)
.+|+.+|+..|++.++
T Consensus 53 kTI~~~Di~~A~~~l~ 68 (68)
T 1b67_A 53 KTIKAEDIELARKMFK 68 (68)
T ss_dssp SEECHHHHHHHGGGGC
T ss_pred CccCHHHHHHHHHhcC
Confidence 6799999999998753
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=30.68 E-value=48 Score=27.78 Aligned_cols=94 Identities=22% Similarity=0.347 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCC-----CCC----CCEEEEEeeCCCCCCCccccCCCccce---------EEEecCCCH--HHHHHHHH
Q 039253 19 RIPNQLLTEMDGL-----SAK----KTIFVIGVTNRPDIIDPALLRPGRLDQ---------LIYIPLPVE--KSRLQIFK 78 (199)
Q Consensus 19 r~~~~lL~~ld~~-----~~~----~~VvvI~aTN~~~~lD~al~R~gRfd~---------~i~~~~P~~--~~R~~il~ 78 (199)
.+-..||..|+.- .+. -++-+|+|||.. +. .....|+|.. .|++|+..+ ++...++.
T Consensus 237 ~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~-~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~ 313 (368)
T 3dzd_A 237 RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN--LE-EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAE 313 (368)
T ss_dssp HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC--HH-HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHH
T ss_pred HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC--HH-HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHH
Confidence 3456667666531 111 246789999942 22 2233355543 455554433 45566666
Q ss_pred HhhcCC----CCC-Cccc---HHHHHhhCCCCCH--HHHHHHHHHHHHH
Q 039253 79 ACLRKS----PVS-KDVD---LEKLAQFTQGFSG--ADITEICQRACKD 117 (199)
Q Consensus 79 ~~l~~~----~~~-~~~~---l~~la~~t~G~sg--aDI~~lv~~A~~~ 117 (199)
+++.+. ... ..+. +..|... .|.| ++|++++++|+..
T Consensus 314 ~~l~~~~~~~~~~~~~~~~~a~~~L~~~--~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 314 YFLKKFAKEYKKNCFELSEETKEYLMKQ--EWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp HHHHHHHHHTTCCCCCBCHHHHHHHHTC--CCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCcCHHHHHHHHhC--CCCcHHHHHHHHHHHHHHh
Confidence 666432 111 1222 3333332 3433 6777777776543
No 103
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=29.03 E-value=58 Score=29.02 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=41.2
Q ss_pred HHHHhCCCCCCCEEEEEeeCCCC--CCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 039253 25 LTEMDGLSAKKTIFVIGVTNRPD--IIDPALLRPGRLDQLIYIPLPVEKSRLQIFKA 79 (199)
Q Consensus 25 L~~ld~~~~~~~VvvI~aTN~~~--~lD~al~R~gRfd~~i~~~~P~~~~R~~il~~ 79 (199)
+..|-.....-++-+|.+|.+|. .++..++. -|..+|-|.+.+..+...|+..
T Consensus 321 l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 321 IARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp HHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred HHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 33333333445789999999987 68888888 8999999999999988888753
No 104
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.88 E-value=14 Score=31.25 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhCCCCCCCEEEEEeeCCCCCCCcccc
Q 039253 18 DRIPNQLLTEMDGLSAKKTIFVIGVTNRPDIIDPALL 54 (199)
Q Consensus 18 ~r~~~~lL~~ld~~~~~~~VvvI~aTN~~~~lD~al~ 54 (199)
.+.+++++..|.++....++.+|++|| +...|+++.
T Consensus 208 ~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 208 SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSHH
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhHH
Confidence 456677777777665556678888888 777887753
No 105
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.78 E-value=64 Score=20.86 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHhhcCCCCCCcccHHHHHhhCCCCCHHHHHH
Q 039253 75 QIFKACLRKSPVSKDVDLEKLAQFTQGFSGADITE 109 (199)
Q Consensus 75 ~il~~~l~~~~~~~~~~l~~la~~t~G~sgaDI~~ 109 (199)
++|+.|....+...+.|+..|+.++. ++.-+++.
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~ksk-ms~qqvkd 52 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASR-LSTQQVLD 52 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTT-CCHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhC-CCHHHHHH
Confidence 56666666666666789999999885 77777654
No 106
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=24.68 E-value=1.2e+02 Score=25.00 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhCCCCCCCEEEEEeeCC----CCCCCccccCCCccceEEEecCC
Q 039253 19 RIPNQLLTEMDGLSAKKTIFVIGVTNR----PDIIDPALLRPGRLDQLIYIPLP 68 (199)
Q Consensus 19 r~~~~lL~~ld~~~~~~~VvvI~aTN~----~~~lD~al~R~gRfd~~i~~~~P 68 (199)
.++..+..+|+.+-+.+ .|.+||- +..|-.+..||.||=-...|.+|
T Consensus 100 ~iK~~lf~~l~~~~~~~---aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~ 150 (319)
T 3ado_A 100 DLKRKIFAQLDSIVDDR---VVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPP 150 (319)
T ss_dssp HHHHHHHHHHHTTCCSS---SEEEECCSSCCHHHHHTTCTTGGGEEEEEECSST
T ss_pred HHHHHHHHHHHHHhhhc---ceeehhhhhccchhhhhhccCCCcEEEecCCCCc
Confidence 57889999999886544 2334443 34444567788898777667666
No 107
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=23.82 E-value=83 Score=20.15 Aligned_cols=15 Identities=33% Similarity=0.242 Sum_probs=13.3
Q ss_pred ccccHHHHHHHHHhc
Q 039253 143 AEIKAEHFEESMKYA 157 (199)
Q Consensus 143 ~~it~~df~~Al~~~ 157 (199)
.+|+.+|+..|++.+
T Consensus 56 KTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 56 KIIKPEHTIAAAKVI 70 (76)
T ss_dssp SSBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 679999999999875
No 108
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=23.61 E-value=48 Score=21.33 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=11.0
Q ss_pred ccccHHHHHHHHH
Q 039253 143 AEIKAEHFEESMK 155 (199)
Q Consensus 143 ~~it~~df~~Al~ 155 (199)
..++.+|+..|++
T Consensus 57 k~Lt~~DI~~Alk 69 (70)
T 1taf_B 57 QKLSVRDIDMSLK 69 (70)
T ss_dssp SSBCHHHHHHHHC
T ss_pred CeecHHHHHHHHc
Confidence 5699999999875
No 109
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=20.32 E-value=72 Score=21.83 Aligned_cols=15 Identities=13% Similarity=0.093 Sum_probs=13.4
Q ss_pred ccccHHHHHHHHHhc
Q 039253 143 AEIKAEHFEESMKYA 157 (199)
Q Consensus 143 ~~it~~df~~Al~~~ 157 (199)
..|+.+|+..||+..
T Consensus 80 ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 80 KTVTAMDVVYALKRQ 94 (103)
T ss_dssp SEECHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHc
Confidence 579999999999976
Done!