Query 039254
Match_columns 511
No_of_seqs 288 out of 1408
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 13:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.8 1.1E-21 3.7E-26 200.6 10.0 127 158-290 17-143 (320)
2 3v5u_A Uncharacterized membran 99.8 2.7E-20 9.4E-25 190.2 6.6 127 159-293 177-304 (320)
3 3hzq_A Large-conductance mecha 9.3 3.2E+02 0.011 23.1 4.2 15 207-221 33-47 (114)
4 1v54_K IHQ, cytochrome C oxida 7.6 5.4E+02 0.018 18.9 4.2 13 490-502 23-35 (56)
5 3kly_A Putative formate transp 5.8 1.2E+03 0.041 22.3 7.2 17 209-225 255-271 (280)
6 4ev6_A Magnesium transport pro 5.7 5.8E+02 0.02 24.9 4.9 16 420-435 279-294 (339)
7 4fc4_A Nitrite transporter NIR 5.3 5.3E+02 0.018 24.7 4.2 16 211-226 229-244 (261)
8 2ei4_A AR 2, archaerhodopsin-2 5.1 1.3E+03 0.043 21.7 6.8 43 452-495 14-57 (253)
9 2l6x_A GPR, green-light absorb 5.0 1.1E+03 0.036 22.1 6.1 22 459-480 20-41 (243)
10 3am6_A Rhodopsin-2, AR2; seven 4.4 9.1E+02 0.031 22.3 5.1 49 454-502 12-62 (229)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.85 E-value=1.1e-21 Score=200.60 Aligned_cols=127 Identities=15% Similarity=0.345 Sum_probs=117.8
Q ss_pred HHhhhhhcccHHHHHHhcCCCcccccceeeccccChhHHHHHHHHhhcCCCcceehhhhhhhhHHHHHHHhhhheeeecc
Q 039254 158 NTAADYFCCSLEKLSSLLRLPPTVAGVTLLPLGNGAPDVFASIAAFMGTNTGEVGLNSVLGGAVFVTCVVVGTVSLYVAE 237 (511)
Q Consensus 158 ~~a~~yf~psl~~Is~~L~ls~~vaGvTlLA~GnsaPDl~~si~a~~~~~~~~la~g~ilGs~iF~~~vv~G~~~l~~~~ 237 (511)
..++|||+++.+.+++++|+||.++|+|++|+|||+||+++++.|.. +|++|+++||++|||+||+++++|+++++
T Consensus 17 ~~~a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~-~g~~diaiGnivGSni~nillvlG~~~li--- 92 (320)
T 3v5u_A 17 YYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASY-MHAPGISIGNAIGSCICNIGLVLGLSAII--- 92 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHh-CCCCceeeeeecchHHHHHHHHHHHHHHH---
Confidence 47899999999999999999999999999999999999999999975 78999999999999999999999999998
Q ss_pred eeeeeCcchHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHH
Q 039254 238 KRVQVDRKCFIRDVCFFLFTLLCLLIILVIGKVNVGVAIAFVSIYVVYAFSVA 290 (511)
Q Consensus 238 ~p~~v~~~~~~rD~~f~l~a~~~l~~~l~~g~i~~~eai~ll~iY~~Yv~~v~ 290 (511)
+|+++ ++.+.||..+++++..++..+.++| +++++|++++.+|++|+.+.+
T Consensus 93 ~p~~v-~~~~~~d~~~~l~~~~~l~~~~~~g-is~~~g~~Ll~~Y~~yl~~~~ 143 (320)
T 3v5u_A 93 SPIIV-DKNLQKNILVYLLFVIFAAVIGIDG-FSWIDGVVLLILFIIYLRWTV 143 (320)
T ss_dssp SCBCC-CHHHHHHHHHHHHHHHHHHHHTTTC-BCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccc-cHHHHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHH
Confidence 78888 6788999999998877777777888 999999999999999998765
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.80 E-value=2.7e-20 Score=190.23 Aligned_cols=127 Identities=21% Similarity=0.337 Sum_probs=116.1
Q ss_pred HhhhhhcccHHHHHHhcCCCcccccceeeccccChhHHHHHHHHhhcCCCcceehhhhhhhhHHHHHHHhhhheeeecce
Q 039254 159 TAADYFCCSLEKLSSLLRLPPTVAGVTLLPLGNGAPDVFASIAAFMGTNTGEVGLNSVLGGAVFVTCVVVGTVSLYVAEK 238 (511)
Q Consensus 159 ~a~~yf~psl~~Is~~L~ls~~vaGvTlLA~GnsaPDl~~si~a~~~~~~~~la~g~ilGs~iF~~~vv~G~~~l~~~~~ 238 (511)
.++++|+++++.+++.+|+||.++|+|++|+|||+||+++++.++ ++|+.|+++|+++|||+||+++++|+++++ +
T Consensus 177 ~~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa-~~g~~~laig~iiGS~ifn~~~v~g~~~li---~ 252 (320)
T 3v5u_A 177 VGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAA-KRNLGGMVLGNVIGSNIADIGGALAVGSLF---M 252 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTHHHHHHHH---S
T ss_pred HHHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHH-HcCCCcHHHHHHHhHHHHHHHHHHHHHHhh---c
Confidence 568999999999999999999999999999999999999999997 479999999999999999999999999998 7
Q ss_pred eeeeCcchHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHH-HHHHHHHHH
Q 039254 239 RVQVDRKCFIRDVCFFLFTLLCLLIILVIGKVNVGVAIAFVSIYVV-YAFSVAANE 293 (511)
Q Consensus 239 p~~v~~~~~~rD~~f~l~a~~~l~~~l~~g~i~~~eai~ll~iY~~-Yv~~v~~~~ 293 (511)
|++++ .||..+++++.+++..++.+|+++++||+.++.+|++ |+.+++...
T Consensus 253 p~~~~----~~d~~~~l~~~~ll~~~~~~~~i~~~eG~~ll~~Y~~~y~~~~~~~~ 304 (320)
T 3v5u_A 253 HLPAE----NVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRMGGG 304 (320)
T ss_dssp CBCCC----HHHHHHHHHHHHHHHHHHHHSCBSHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred cccch----HHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88775 7899998887766666778999999999999999999 998876443
No 3
>3hzq_A Large-conductance mechanosensitive channel; intermediate state mechanosensitive channel osmoregulation, cell membrane, ION transport; 3.82A {Staphylococcus aureus subsp}
Probab=9.25 E-value=3.2e+02 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.483 Sum_probs=12.1
Q ss_pred CCcceehhhhhhhhH
Q 039254 207 NTGEVGLNSVLGGAV 221 (511)
Q Consensus 207 ~~~~la~g~ilGs~i 221 (511)
+--|+|+|-++|++.
T Consensus 33 NViDLAVgVIIG~AF 47 (114)
T 3hzq_A 33 NVLDLAIAVVMGAAF 47 (114)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 455899999999876
No 4
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=7.57 E-value=5.4e+02 Score=18.87 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 039254 490 FFMSIVWFYMIAN 502 (511)
Q Consensus 490 F~mSi~WI~~iA~ 502 (511)
-+...+|.|++.+
T Consensus 23 ~FC~a~W~y~~TQ 35 (56)
T 1v54_K 23 TFCVAVWVYMATQ 35 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHhhHhhhhee
Confidence 3444567777654
No 5
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=5.80 E-value=1.2e+03 Score=22.31 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=13.0
Q ss_pred cceehhhhhhhhHHHHH
Q 039254 209 GEVGLNSVLGGAVFVTC 225 (511)
Q Consensus 209 ~~la~g~ilGs~iF~~~ 225 (511)
....+||++|+.+|+.+
T Consensus 255 ipvtlGNiiGG~~fvgl 271 (280)
T 3kly_A 255 IPVTLGNIVGGGVFVGM 271 (280)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34558999999988765
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=5.71 E-value=5.8e+02 Score=24.89 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=9.5
Q ss_pred chHHHHHHHhHHHHHH
Q 039254 420 SKRYAVASALLAPILL 435 (511)
Q Consensus 420 sK~l~v~q~~laP~~l 435 (511)
-|.+.++.+++.|.-+
T Consensus 279 mk~LTiit~IflP~T~ 294 (339)
T 4ev6_A 279 MKILTMVTTIFAVPMW 294 (339)
T ss_dssp HHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556667666666443
No 7
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=5.33 E-value=5.3e+02 Score=24.66 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=12.3
Q ss_pred eehhhhhhhhHHHHHH
Q 039254 211 VGLNSVLGGAVFVTCV 226 (511)
Q Consensus 211 la~g~ilGs~iF~~~v 226 (511)
..+||++|+.+|+.+.
T Consensus 229 vtlGNiiGG~~fvgl~ 244 (261)
T 4fc4_A 229 VTLGNTLSGVVFMGLG 244 (261)
T ss_dssp HHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4499999998876553
No 8
>2ei4_A AR 2, archaerhodopsin-2; membrane protein, retinal, bacterioruberin, proton pump, TRA protein; HET: GLC RET 22B L2P; 2.10A {Halobacterium SP} PDB: 1vgo_A* 2z55_A* 1uaz_A*
Probab=5.13 E-value=1.3e+03 Score=21.65 Aligned_cols=43 Identities=7% Similarity=-0.088 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHhhhcc-cCCCCCCchhHHHHHHHHHHHHHH
Q 039254 452 VAYFVGIVLGCALGFLSYRF-TVVDHPPQKFLILWVLGGFFMSIV 495 (511)
Q Consensus 452 ~~~~v~l~ig~~lai~v~~t-T~~d~pP~~~~~~~~~lGF~mSi~ 495 (511)
..|++....+..++.+.|+. ++..++|++ +....+.+++..+.
T Consensus 14 s~w~w~~~a~m~~atv~F~~~~~~~~~~~~-R~~~~~~~lvt~iA 57 (253)
T 2ei4_A 14 TLWLGIGTLLMLIGTFYFIARGWGVTDKEA-REYYAITILVPGIA 57 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCHHH-HHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhcCCCcc-eeehhHHHHHHHHH
Confidence 44555555555555555554 455555664 33333334444433
No 9
>2l6x_A GPR, green-light absorbing proteorhodopsin; membrane protein structure, cell-free expre proton transport; HET: LYR; NMR {Uncultured marine gamma PROTEOBACTERIUEBAC31A08}
Probab=5.03 E-value=1.1e+03 Score=22.11 Aligned_cols=22 Identities=0% Similarity=-0.209 Sum_probs=10.7
Q ss_pred HHHHHHHHhhhcccCCCCCCch
Q 039254 459 VLGCALGFLSYRFTVVDHPPQK 480 (511)
Q Consensus 459 ~ig~~lai~v~~tT~~d~pP~~ 480 (511)
.++..++.+.|+......||++
T Consensus 20 ~a~m~~~t~~f~~~~~~~~~~~ 41 (243)
T 2l6x_A 20 TAALLASTVFFFVERDRVSAKW 41 (243)
T ss_dssp HHHHHHHHHHHHHGGGSSCSTT
T ss_pred HHHHHHHHHHHHHHHcccCCcc
Confidence 3334444455555555555554
No 10
>3am6_A Rhodopsin-2, AR2; seven trans-membrane, transport protein; HET: RET CLR; 3.20A {Acetabularia acetabulum}
Probab=4.39 E-value=9.1e+02 Score=22.30 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCch--hHHHHHHHHHHHHHHHHHHHHH
Q 039254 454 YFVGIVLGCALGFLSYRFTVVDHPPQK--FLILWVLGGFFMSIVWFYMIAN 502 (511)
Q Consensus 454 ~~v~l~ig~~lai~v~~tT~~d~pP~~--~~~~~~~lGF~mSi~WI~~iA~ 502 (511)
|++....+..++.+.|+......||++ ++.+..+.-++.++.-.+...+
T Consensus 12 ~lw~~~a~m~~~tv~f~~~~~~~~~~~r~~~~~~~lvt~iaa~~Y~~Ma~~ 62 (229)
T 3am6_A 12 AQWIVFAIMAAAAIAFGVAVHFRPSELKSAYYINIAICTIAATAYYAMAVN 62 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcceehhHHHHHHHHHHHHHHHHHHHc
Done!