Query 039254
Match_columns 511
No_of_seqs 288 out of 1408
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 13:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uaza_ f.13.1.1 (A:) Archaerh 7.6 3.2E+02 0.023 23.4 6.3 46 451-496 15-60 (236)
2 d1m0ka_ f.13.1.1 (A:) Bacterio 7.2 3.1E+02 0.023 23.3 6.0 43 454-497 8-51 (227)
3 d2iuba2 f.17.3.1 (A:286-349) M 6.0 2.6E+02 0.019 18.7 3.8 14 421-434 7-20 (64)
4 d1h2sa_ f.13.1.1 (A:) Sensory 5.9 4E+02 0.029 22.4 6.0 20 461-480 14-33 (225)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 5.9 3.9E+02 0.028 23.2 5.9 25 263-287 44-71 (248)
6 d1qk6a_ g.3.6.2 (A:) Huwentoxi 5.0 74 0.0054 19.0 0.1 6 417-422 26-31 (33)
7 d1e12a_ f.13.1.1 (A:) Halorhod 4.8 4.7E+02 0.034 22.2 5.8 35 462-497 17-52 (239)
8 d1oyia_ a.4.5.19 (A:) dsRNA-bi 4.1 99 0.0072 20.7 0.2 13 469-481 47-59 (62)
9 d1l0oc_ a.4.13.2 (C:) SigmaF { 4.0 1.6E+02 0.012 19.5 1.4 16 165-180 31-46 (57)
10 d1gesa3 d.87.1.1 (A:336-450) G 3.8 2.6E+02 0.019 20.9 2.8 26 178-205 64-89 (115)
No 1
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=7.59 E-value=3.2e+02 Score=23.37 Aligned_cols=46 Identities=7% Similarity=-0.100 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCCCCchhHHHHHHHHHHHHHHH
Q 039254 451 LVAYFVGIVLGCALGFLSYRFTVVDHPPQKFLILWVLGGFFMSIVW 496 (511)
Q Consensus 451 ~~~~~v~l~ig~~lai~v~~tT~~d~pP~~~~~~~~~lGF~mSi~W 496 (511)
-..|++...++..++.+.|+..+.+.+|+.++......+++..|..
T Consensus 15 ~~~wl~~~~~~m~~~tv~f~~~~~~~~~~~~r~~~~~~~lIt~IAa 60 (236)
T d1uaza_ 15 ETLWLGIGTLLMLIGTFYFIVKGWGVTDKEAREYYSITILVPGIAS 60 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHccCCCCcceeeeeHHHHHHHHHH
Confidence 3456554455555555555555544433333333444444444433
No 2
>d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=7.19 E-value=3.1e+02 Score=23.27 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhcccCCCC-CCchhHHHHHHHHHHHHHHHH
Q 039254 454 YFVGIVLGCALGFLSYRFTVVDH-PPQKFLILWVLGGFFMSIVWF 497 (511)
Q Consensus 454 ~~v~l~ig~~lai~v~~tT~~d~-pP~~~~~~~~~lGF~mSi~WI 497 (511)
|++...++..++.+.|+..+.+. .|++ +....+.+++..|..+
T Consensus 8 wlw~~~~~m~~a~v~f~~~~~~v~~~~~-r~~~~~~~~i~~IA~~ 51 (227)
T d1m0ka_ 8 WLALGTALMGLGTLYFLVKGMGVSDPDA-KKFYAITTLVPAIAFT 51 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcch-hhhhHHHHHHHHHHHH
Confidence 44444445555555555555444 4554 4445555666666555
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.99 E-value=2.6e+02 Score=18.72 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=9.0
Q ss_pred hHHHHHHHhHHHHH
Q 039254 421 KRYAVASALLAPIL 434 (511)
Q Consensus 421 K~l~v~q~~laP~~ 434 (511)
|.+.++..++.|.=
T Consensus 7 k~lT~it~iflP~t 20 (64)
T d2iuba2 7 KVLTIIATIFMPLT 20 (64)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45667777777743
No 4
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=5.88 E-value=4e+02 Score=22.36 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=8.8
Q ss_pred HHHHHHhhhcccCCCCCCch
Q 039254 461 GCALGFLSYRFTVVDHPPQK 480 (511)
Q Consensus 461 g~~lai~v~~tT~~d~pP~~ 480 (511)
+..++.+.|+....+++|++
T Consensus 14 ~m~~~tv~F~~~~~~~~~~~ 33 (225)
T d1h2sa_ 14 GMLVGTLAFAWAGRDAGSGE 33 (225)
T ss_dssp HHHHHHHHHHHHTTTCCTTT
T ss_pred HHHHHHHHHHHHHcCCCCcc
Confidence 33344444444444444444
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=5.88 E-value=3.9e+02 Score=23.16 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=16.3
Q ss_pred HHHhCCccc---hHHHHHHHHHHHHHHH
Q 039254 263 IILVIGKVN---VGVAIAFVSIYVVYAF 287 (511)
Q Consensus 263 ~~l~~g~i~---~~eai~ll~iY~~Yv~ 287 (511)
+++..+.+- ..-|++++++|.+|-+
T Consensus 44 vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi 71 (248)
T d2r6gf1 44 IFANRKAYAWRYVYPGMAGMGLFVLFPL 71 (248)
T ss_dssp HHSSSCCTTHHHHHHHHHHHHHHTHHHH
T ss_pred EEEccCccceehhhhHHHHHHHHHHHhh
Confidence 344455554 3578888888888854
No 6
>d1qk6a_ g.3.6.2 (A:) Huwentoxin-I {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=4.99 E-value=74 Score=19.04 Aligned_cols=6 Identities=33% Similarity=0.828 Sum_probs=2.6
Q ss_pred CCcchH
Q 039254 417 DMWSKR 422 (511)
Q Consensus 417 ~~WsK~ 422 (511)
++|+||
T Consensus 26 ~kw~kw 31 (33)
T d1qk6a_ 26 HKWCKW 31 (33)
T ss_dssp SCSEEE
T ss_pred cceeec
Confidence 344443
No 7
>d1e12a_ f.13.1.1 (A:) Halorhodopsin {Archaeon Halobacterium salinarum [TaxId: 2242]}
Probab=4.80 E-value=4.7e+02 Score=22.16 Aligned_cols=35 Identities=9% Similarity=0.195 Sum_probs=18.2
Q ss_pred HHHHHhhhcc-cCCCCCCchhHHHHHHHHHHHHHHHH
Q 039254 462 CALGFLSYRF-TVVDHPPQKFLILWVLGGFFMSIVWF 497 (511)
Q Consensus 462 ~~lai~v~~t-T~~d~pP~~~~~~~~~lGF~mSi~WI 497 (511)
..++.+.|+. +.+.+||++ +....+.+++..|..+
T Consensus 17 m~~a~~~f~~~~~~~~~~~~-R~~~~l~~~I~~IA~~ 52 (239)
T d1e12a_ 17 AGIAILVFVYMGRTIRPGRP-RLIWGATLMIPLVSIS 52 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCch-hhhhHHHHHHHHHHHH
Confidence 3344455544 455566664 4444455555555554
No 8
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=4.09 E-value=99 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=9.2
Q ss_pred hcccCCCCCCchh
Q 039254 469 YRFTVVDHPPQKF 481 (511)
Q Consensus 469 ~~tT~~d~pP~~~ 481 (511)
..+++.|.||+|+
T Consensus 47 mvy~s~d~pprw~ 59 (62)
T d1oyia_ 47 MVYSSDDIPPRWF 59 (62)
T ss_dssp SSEECSSSSCEEE
T ss_pred heecCCCCCCccc
Confidence 3556788888874
No 9
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=4.01 E-value=1.6e+02 Score=19.52 Aligned_cols=16 Identities=13% Similarity=0.376 Sum_probs=13.6
Q ss_pred cccHHHHHHhcCCCcc
Q 039254 165 CCSLEKLSSLLRLPPT 180 (511)
Q Consensus 165 ~psl~~Is~~L~ls~~ 180 (511)
-|+.+.||+.+++|+.
T Consensus 31 ePT~~EiA~~l~~~~e 46 (57)
T d1l0oc_ 31 APTVTEIADHLGISPE 46 (57)
T ss_dssp CCBHHHHHHHHTSCHH
T ss_pred CCCHHHHHHHHCcCHH
Confidence 5899999999999864
No 10
>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=3.83 E-value=2.6e+02 Score=20.87 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=21.2
Q ss_pred CcccccceeeccccChhHHHHHHHHhhc
Q 039254 178 PPTVAGVTLLPLGNGAPDVFASIAAFMG 205 (511)
Q Consensus 178 s~~vaGvTlLA~GnsaPDl~~si~a~~~ 205 (511)
+..+.|++++ |..+.|++..+..++.
T Consensus 64 ~~~IlGa~iv--G~~A~ElI~~~~~ai~ 89 (115)
T d1gesa3 64 EEKIVGIHGI--GFGMDEMLQGFAVALK 89 (115)
T ss_dssp TTEEEEEEEE--STTHHHHHHHHHHHHH
T ss_pred CcEEEEEEEE--CCCHHHHHHHHHHHHH
Confidence 5668999987 8999999988876553
Done!