BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039255
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 146/257 (56%), Positives = 174/257 (67%), Gaps = 18/257 (7%)
Query: 25 FNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F + TW H K FN G + L LD+Y+G+GFQSK YLFG MQ+KLVP +SAGT
Sbjct: 17 FGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGT 76
Query: 85 VTAYYLRSQGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTY 144
VTA+YL SQ DEIDFEFLGN +GQPY + TNV++ GKGDREQ+ +LWFDPT FH Y
Sbjct: 77 VTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKEFHYY 136
Query: 145 SVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDW 204
SVLWN IVF VD +PIR FKN + +GV FP N PM++YSSLWNADDWATRGGL KTDW
Sbjct: 137 SVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRGGLEKTDW 196
Query: 205 SQAPFTASYRNFKADGSRAWL-----------------LQQMDSTNQRRLYWVQKNHMIY 247
S+APF ASYR+F DG A + Q +D+ RRL WV++ + IY
Sbjct: 197 SKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQYRRLSWVRQKYTIY 256
Query: 248 NYCTDTKRFPQGFPKEC 264
NYCTD R+P P EC
Sbjct: 257 NYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 18 AAVSAGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLV 77
+ +++ F++ + WG H ++ LT+ LD SGSGF+S +Y G +KL
Sbjct: 36 SQITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQ 93
Query: 78 PRNSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLW 134
+AG +T++YL + DEID EFLG + G+PYT+ TNV+ +G GDRE + HLW
Sbjct: 94 SGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLW 153
Query: 135 FDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWA 194
FDPT ++H Y++ W P I+F VD +PIR + P P+ VY S+W+A WA
Sbjct: 154 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWA 210
Query: 195 TRGGLIKTDWSQAPFTASYRNFK-----------ADGSRAWLLQQMDSTNQRRLYWVQKN 243
T G K D+ PF Y +FK + + Q+ + WVQKN
Sbjct: 211 TENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKN 270
Query: 244 HMIYNYCTDTKR 255
+M+YNYC D R
Sbjct: 271 YMVYNYCDDPTR 282
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 173 bits (439), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 92/252 (36%), Positives = 134/252 (53%), Gaps = 19/252 (7%)
Query: 18 AAVSAGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLV 77
+ +++ F++ + WG H ++ LT+ LD SGSGF+S +Y G +KL
Sbjct: 13 SQITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQ 70
Query: 78 PRNSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLW 134
+AG +T++YL + DEID EFLG + G+PYT+ TNV+ +G GDRE + HLW
Sbjct: 71 SGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLW 130
Query: 135 FDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWA 194
FDPT ++H Y++ W P I+F VD +PIR + P P+ VY S+W+A WA
Sbjct: 131 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWDASSWA 187
Query: 195 TRGGLIKTDWSQAPFTASYRNFK-----------ADGSRAWLLQQMDSTNQRRLYWVQKN 243
T G K D+ PF Y +FK + + Q+ + WVQKN
Sbjct: 188 TENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAMEWVQKN 247
Query: 244 HMIYNYCTDTKR 255
+M+YNYC D R
Sbjct: 248 YMVYNYCDDPTR 259
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 134/257 (52%), Gaps = 24/257 (9%)
Query: 18 AAVSAGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLV 77
+ +++ F++ + WG H ++ LT+ LD SGSGF+S +Y G +KL
Sbjct: 12 SQITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQ 69
Query: 78 PRNSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGD-----REQ 129
+AG +T++YL + DEID EFLG + G+PYT+ TNV+ +G GD RE
Sbjct: 70 SGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREL 129
Query: 130 QFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWN 189
+ HLWFDPT ++H Y++ W P I+F VD +PIR + P PM VY S+W+
Sbjct: 130 RIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPMWVYGSVWD 186
Query: 190 ADDWATRGGLIKTDWSQAPFTASYRNFK-----------ADGSRAWLLQQMDSTNQRRLY 238
A WAT G K D+ PF Y +FK + + Q+ +
Sbjct: 187 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAME 246
Query: 239 WVQKNHMIYNYCTDTKR 255
WVQKN+M+YNYC D R
Sbjct: 247 WVQKNYMVYNYCDDPTR 263
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 134/257 (52%), Gaps = 24/257 (9%)
Query: 18 AAVSAGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLV 77
+ +++ F++ + WG H ++ LT+ LD SGSGF+S +Y G +KL
Sbjct: 15 SQITSLGFDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQ 72
Query: 78 PRNSAGTVTAYYLRSQGP---TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGD-----REQ 129
+AG +T++YL + DEID EFLG + G+PYT+ TNV+ +G GD RE
Sbjct: 73 SGYTAGVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREM 132
Query: 130 QFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWN 189
+ HLWFDPT ++H Y++ W P I+F VD +PIR + P P+ VY S+W+
Sbjct: 133 RIHLWFDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKSDATFPL---RPLWVYGSVWD 189
Query: 190 ADDWATRGGLIKTDWSQAPFTASYRNFK-----------ADGSRAWLLQQMDSTNQRRLY 238
A WAT G K D+ PF Y +FK + + Q+ +
Sbjct: 190 ASSWATENGKYKADYRYQPFVGKYEDFKLGSCTVEAASSCNPASVSPYGQLSQQQVAAME 249
Query: 239 WVQKNHMIYNYCTDTKR 255
WVQKN+M+YNYC D R
Sbjct: 250 WVQKNYMVYNYCDDPTR 266
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 24 NFNEEFDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPR 79
N+N W H + + G++ L+LT +++ G G QS + Y +G ++ +K P
Sbjct: 12 NYNTGLWQKWAFDHVSMTSLGEMRLSLTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PA 69
Query: 80 NSAGTVTAYYLRSQGPT----WDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWF 135
+ G V+A+Y S GPT WDEID EFLG + + V N Y+ G G+ E+ +L F
Sbjct: 70 KNVGIVSAFY-TSTGPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGF 125
Query: 136 DPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLW---NADD 192
D ++HTY+ W P I + VDG + K+ +P P ++Y SLW D+
Sbjct: 126 DAANSYHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIYMSLWAGAGVDE 178
Query: 193 W 193
W
Sbjct: 179 W 179
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + N+G+L L LT +++ + ++S Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 85 VTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNF 141
V++++ + G WDEID EFLG + + V N Y+ G G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 142 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
HTY+ W P I + VDG+ K+ +P + P ++ +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + N+G+L L LT +++ + ++S Y +G ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 85 VTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNF 141
V++++ + G WDEID EFLG + + V N Y+ G G E+ L FD + F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 142 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
HTY+ W P I + VDG+ K+ +P + P ++ +LWN DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 190
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 88/175 (50%), Gaps = 22/175 (12%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + N+G+L L LT +++ + ++S Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 85 VTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNF 141
V++++ + G WD+ID +FLG + + V N Y+ G G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 142 HTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
HTY+ W P I + VDG+ K+ +P + P ++ +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 192
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 59 FQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTV 115
++S Y +G ++ +K P + G V++++ + G WDEID EFLG + + V
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 116 HTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPF 175
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 176 PKNLPMRVYSSLWNA---DDW 193
+ P ++ +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 59 FQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTV 115
++S Y +G ++ +K P + G V++++ + G WDEID EFLG + + V
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 116 HTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPF 175
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 176 PKNLPMRVYSSLWNA---DDW 193
+ P ++ +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 59 FQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTV 115
++S Y +G ++ +K P + G V++++ + G WDEID EFLG + + V
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---V 60
Query: 116 HTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPF 175
N Y+ G G E+ L FD + FHTY+ W P I + VDG+ K+ +P
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP- 115
Query: 176 PKNLPMRVYSSLWNA---DDW 193
+ P ++ +LWN DDW
Sbjct: 116 --STPGKIMMNLWNGTGVDDW 134
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 24/176 (13%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + + + G++ L+LT +++ +S + Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVSMTSLGEMRLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMK--PAKNVGI 87
Query: 85 VTAYYLRSQGPT----WDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVN 140
V++++ + GPT WDEID EFLG + + V N Y+ G G+ E+ +L FD +
Sbjct: 88 VSSFFTYT-GPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGVGNHEKIVNLGFDAANS 143
Query: 141 FHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
+HTY+ W P I + VDG + K+ +P P ++ +LWN D+W
Sbjct: 144 YHTYAFDWQPNSIKWYVDG----QLKHTATTQIP---QTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 24/176 (13%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + + + G++ L LT +++ +S + Y +G ++++K P + G
Sbjct: 54 FNCTWRANNVSMTSLGEMRLALTSPAYNKFDCGENRSVQTYGYGLYEVRMK--PAKNTGI 111
Query: 85 VTAYYLRSQGPT----WDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVN 140
V++++ + GPT WDEID EFLG + + V N Y+ G G+ E+ L FD
Sbjct: 112 VSSFFTYT-GPTDGTPWDEIDIEFLGKDTTK---VQFNYYTNGAGNHEKIVDLGFDAANA 167
Query: 141 FHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
+HTY+ W P I + VDG + K+ +P P ++ +LWN D+W
Sbjct: 168 YHTYAFDWQPNSIKWYVDG----QLKHTATNQIP---TTPGKIMMNLWNGTGVDEW 216
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRS---QGPTWDEIDFEFLGNLSG 110
Y+G+ ++++ ++ +G Q+++ P + G V++++ + G WDEID EFLG +
Sbjct: 79 YAGAEYRTRDKFGYGL--YQVRMKPAKNPGIVSSFFTYTGPVHGTPWDEIDIEFLGKDTT 136
Query: 111 QPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDG 159
+ V N Y+ G+ E + L FD + +FH Y+ W P I + VDG
Sbjct: 137 K---VQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNYIAWLVDG 182
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 92 SQGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQ 151
+ G WDEID EFLG + + V N Y+ G G E+ L FD + FHTY+ W P
Sbjct: 15 AHGTQWDEIDIEFLGKDTTK---VQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPG 71
Query: 152 RIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNA---DDW 193
I + VDG+ K+ +P + P ++ +LWN DDW
Sbjct: 72 YIKWYVDGV----LKHTATANIP---STPGKIMMNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 73/147 (49%), Gaps = 14/147 (9%)
Query: 49 LTLDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDF 102
+++ +SG+ + ++Y +GK + ++K+ ++GTV++ +L G W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 103 EFLGNLSGQPYTVHTNVYSQGKG-DREQQFHLWFDPTVN--FHTYSVLWNPQRIVFSVDG 159
E LG P + +N+ + G + + H P + FHTY + W P + ++VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 160 IPIREFKNLEAIGVPFPKNLPMRVYSS 186
+R+ + + + + L ++SS
Sbjct: 117 QEVRKTEGGQVSNLTGTQGLRFNLWSS 143
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 107
+SG+ + ++ +GK + ++K+ ++GTV++ +L G W E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 61
Query: 108 LSGQPYTVHTNVYSQGKG-DREQQFHLWFDPTVN--FHTYSVLWNPQRIVFSVDGIPIRE 164
P + +N+ + G + + H P + FHTY + W P + ++VDG +R+
Sbjct: 62 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
Query: 165 FKNLEAIGVPFPKNLPMRVYSS 186
+ + + + L ++SS
Sbjct: 119 TEGGQVSNLTGTQGLRFNLWSS 140
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 107
+SG+ + ++ +GK + ++K+ ++GTV++ +L G W E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK 62
Query: 108 LSGQPYTVHTNVYSQGKGDREQQF-HLWFDPTVN--FHTYSVLWNPQRIVFSVDGIPIRE 164
P + +N+ + G ++ H P + FHTY + W P + ++VDG +R+
Sbjct: 63 ---NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
Query: 165 FKNLEAIGVPFPKNLPMRVYSS 186
+ + + + L ++SS
Sbjct: 120 TEGGQVSNLTGTQGLRFNLWSS 141
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 107
+SG+ + ++ +GK + ++K+ ++GTV++ L G W E+D E LG
Sbjct: 5 FSGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK 62
Query: 108 LSGQPYTVHTNVYSQGKG-DREQQFHLWFDPTVN--FHTYSVLWNPQRIVFSVDGIPIRE 164
P + +N+ + G + + H P + FHTY + W P + ++VDG +R+
Sbjct: 63 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
Query: 165 FKNLEAIGVPFPKNLPMRVYSS 186
+ + + + L ++SS
Sbjct: 120 TEGGQVSNLTGTQGLRFNLWSS 141
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 107
+SG+ + ++ +GK + + K ++GTV++ +L G W E+D E LG
Sbjct: 7 FSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK 64
Query: 108 LSGQPYTVHTNVYSQGKG-DREQQFHLWFDPTVN--FHTYSVLWNPQRIVFSVDGIPIRE 164
P + +N+ + G + + H P + FHTY + W P + ++VDG +R+
Sbjct: 65 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
Query: 165 FKNLEAIGVPFPKNLPMRVYSS 186
+ + + + L ++SS
Sbjct: 122 TEGGQVSNLTGTQGLRFNLWSS 143
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 54 YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPT------WDEIDFEFLGN 107
+SG+ + ++ +GK + + K ++GTV++ +L G W E+D E LG
Sbjct: 4 FSGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK 61
Query: 108 LSGQPYTVHTNVYSQGKG-DREQQFHLWFDPTVN--FHTYSVLWNPQRIVFSVDGIPIRE 164
P + +N+ + G + + H P + FHTY + W P + ++VDG +R+
Sbjct: 62 ---NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
Query: 165 FKNLEAIGVPFPKNLPMRVYSS 186
+ + + + L ++SS
Sbjct: 119 TEGGQVSNLTGTQGLRFNLWSS 140
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 67/143 (46%), Gaps = 11/143 (7%)
Query: 60 QSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQG----PTWDEIDFEFLGNLSGQPYTV 115
Q+K Q +G+++ ++ +PR G A+++ P D + + + N+ +P+ V
Sbjct: 80 QNKVQPQYGRVEASIQ-IPRGQ-GIWPAFWMLGADFPNTPWPDSGEIDIMENIGREPHLV 137
Query: 116 HTNVYSQGKGDREQQFHLWFDP-----TVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA 170
H +++ G E + P FHT++V W P I +SVDG+ + + + +
Sbjct: 138 HGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVDWRPGSITWSVDGVAYQTYTSADT 197
Query: 171 IGVPFPKNLPMRVYSSLWNADDW 193
G P+ + P + ++ DW
Sbjct: 198 RGNPWVFDQPFFMILNVAVGGDW 220
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 125 GDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVY 184
G E+ L FD + FHTY+ W P I + VDG+ K+ +P + P ++
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV----LKHTATANIP---STPGKIM 54
Query: 185 SSLWNA---DDW 193
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 12/102 (11%)
Query: 29 FDITWGDGHGKIFNNGQL-LTLT---LDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGT 84
F+ TW + N+G+L L LT +++ + ++S Y +G ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 85 VTAYYLRS---QGPTWDEIDFEFLGNLSGQPYTVHTNVYSQG 123
V++++ + G WDEID EFLG + + V N Y+ G
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGKDTTK---VQFNYYTNG 214
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 60 QSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDFEFLGNLSGQPY 113
Q K Q +G+I+ +++ +PR G A+++ P+ EID + N+ +P+
Sbjct: 76 QGKYQPQYGRIEARIQ-IPRGQ-GIWPAFWMLGGSFPGTPWPSSGEIDI--MENVGFEPH 131
Query: 114 TVHTNVYSQGKGDREQQFHLWFDP-----TVNFHTYSVLWNPQRIVFSVDG 159
VH V+ G ++ P FHT++V W P I + VDG
Sbjct: 132 RVHGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 13/108 (12%)
Query: 90 LRSQG-PTWDEIDF-EFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDP------TVNF 141
+R G P EID EFLG+ +P T+H V+ G + + P T +F
Sbjct: 127 IREVGWPNCGEIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDF 183
Query: 142 HTYSVLWNPQRIVFSVDGIPIREF--KNLEAIGVPFPKNLPMRVYSSL 187
H + ++W P +I + VDG E + +EA+G + + P + +L
Sbjct: 184 HVFGIVWYPDKIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 131 FHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNL 168
+HL FDP +FHTY V +I + VDG + E NL
Sbjct: 182 YHLPFDPRNDFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 193 WATRGGLIKTDWSQAPFTASYRNFKADGSRAW---LLQQMDSTNQRRLYWVQKNHMIYNY 249
+ T GG I W+ AP SYR F + S W ++ T R YW NH +
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTS-ASDVWSFGIVMWEVMTYGERPYWELSNHEVMKA 262
Query: 250 CTDTKRFPQGFPKEC 264
D R P P +C
Sbjct: 263 INDGFRLPT--PMDC 275
>pdb|4ANN|A Chain A, Crystal Structure Staphylococcus Aureus Essb Cytoplasmic
Fragment
Length = 215
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 139 VNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFP 176
VN Y+ + P + F+ DG+PI + + L+ + P P
Sbjct: 96 VNRTRYTFVLAPDELFFTRDGLPIAKTRGLQNVVDPLP 133
>pdb|3RBY|A Chain A, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
pdb|3RBY|B Chain B, Crystal Structure Of Uncharacterized Protein Ylr301w From
Saccharomycces Cerevisiae
Length = 245
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 95 PTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTV 139
P+ DE+ F F +G TV N QG G Q F+ W D V
Sbjct: 42 PSGDELSFPFEWAFAGTNETVKAN--DQGNGVVTQDFNFWLDTNV 84
>pdb|1JMX|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida
pdb|1JMZ|B Chain B, Crystal Structure Of A Quinohemoprotein Amine
Dehydrogenase From Pseudomonas Putida With Inhibitor
Length = 349
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 86 TAYYLRSQ-----GPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVN 140
TAY L + G D F NLS P V ++YS ++ + +PT
Sbjct: 56 TAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQR 115
Query: 141 FHTYSVLWNPQRIVFS-VDGI---PIREF 165
+ + V+ P+ VFS DG+ P+R F
Sbjct: 116 LNDHYVVKPPRLEVFSTADGLEAKPVRTF 144
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 60 QSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDF-EFLGNLSGQP 112
+ K + +GKI+++ KL P+ G A ++ PT EID E LG+ +
Sbjct: 89 EGKFEIKYGKIEIRAKL-PKGK-GIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 146
Query: 113 Y-TVHTNVYSQGKGDREQQFHL---WFDPTVNFHTYSVLWNPQRIVFSVDG 159
Y T H YS G +HL D + +FH +S+ W+ + + VDG
Sbjct: 147 YGTAHGPGYS-GGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 196
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 114 TVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDG-----IPIREFKNL 168
TVHT Y+ G + +FH Y++ W P+ I + VD P N
Sbjct: 140 TVHTKAYNHLLGTQRGGSIRVPTARTDFHVYAIEWTPEEIRWFVDDSLYYRFPNERLTNP 199
Query: 169 EAIGVPFPKNLPMRVYSSLWNADDWATRGGL 199
EA +P + P + ++ W + G+
Sbjct: 200 EADWRHWPFDQPFHLIMNIAVGGTWGGQQGV 230
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 60 QSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQG------PTWDEIDF-EFLGNLSGQP 112
+ K + +GKI+++ KL P+ G A ++ PT EID E LG+ +
Sbjct: 97 EGKFEIKYGKIEIRAKL-PKGK-GIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTV 154
Query: 113 Y-TVHTNVYSQGKGDREQQFHL---WFDPTVNFHTYSVLWNPQRIVFSVDG 159
Y T H YS G +HL D + +FH +S+ W+ + + VDG
Sbjct: 155 YGTAHGPGYS-GGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDG 204
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 27.7 bits (60), Expect = 7.0, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 24 NFNEEFDITWGDGHG-KIFNNGQLLTLTLDRYSGSG 58
NFN+E D WGD G + NNG++ L+L + G
Sbjct: 303 NFNKELD-XWGDQPGVDLDNNGRVTGLSLAGFGAKG 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,100,942
Number of Sequences: 62578
Number of extensions: 406128
Number of successful extensions: 790
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 39
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)