Query 039255
Match_columns 267
No_of_seqs 278 out of 1744
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:51:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 3.6E-78 7.8E-83 546.4 32.8 247 21-267 23-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 1.5E-77 3.2E-82 538.7 31.5 242 22-264 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 7.7E-45 1.7E-49 316.7 25.1 179 28-220 9-201 (203)
4 cd02175 GH16_lichenase lichena 100.0 8.1E-39 1.7E-43 280.1 25.1 172 31-219 27-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 4.4E-36 9.6E-41 255.8 20.2 174 27-217 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 4.8E-34 1E-38 247.6 23.9 171 30-218 24-209 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 2.6E-34 5.5E-39 258.8 21.5 178 34-219 56-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 9.4E-34 2E-38 250.9 22.2 177 31-218 33-234 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 1.6E-31 3.4E-36 241.8 21.4 170 35-219 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.1E-31 2.4E-36 245.5 19.1 181 32-219 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 5.3E-31 1.2E-35 237.4 20.2 180 32-219 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 4.2E-30 9.1E-35 239.0 18.7 137 56-194 101-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 1.5E-29 3.2E-34 234.3 18.2 134 56-191 98-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 5.2E-25 1.1E-29 205.9 18.7 157 29-194 72-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.7 2.7E-18 5.8E-23 117.8 3.5 43 222-264 6-51 (51)
16 PF03935 SKN1: Beta-glucan syn 99.7 8.1E-17 1.7E-21 155.1 13.3 178 34-220 159-453 (504)
17 cd02181 GH16_fungal_Lam16A_glu 99.7 3E-16 6.4E-21 142.8 13.4 168 21-194 9-251 (293)
18 PF13385 Laminin_G_3: Concanav 95.6 0.51 1.1E-05 37.1 13.1 74 138-235 84-157 (157)
19 PF06439 DUF1080: Domain of Un 92.8 1.2 2.5E-05 37.2 9.6 121 40-168 27-156 (185)
20 cd00152 PTX Pentraxins are pla 91.6 8.2 0.00018 33.2 17.6 85 137-238 88-174 (201)
21 smart00159 PTX Pentraxin / C-r 91.2 9.3 0.0002 33.1 17.8 85 137-238 88-174 (206)
22 smart00210 TSPN Thrombospondin 91.1 4.5 9.7E-05 34.4 11.4 88 69-166 55-144 (184)
23 PF09264 Sial-lect-inser: Vibr 87.7 1 2.3E-05 38.8 4.8 27 139-165 92-120 (198)
24 PF10287 DUF2401: Putative TOS 87.5 2.7 5.8E-05 37.6 7.5 79 70-151 103-207 (235)
25 smart00560 LamGL LamG-like jel 85.5 17 0.00036 29.0 14.0 66 137-219 59-126 (133)
26 cd00110 LamG Laminin G domain; 76.4 35 0.00076 26.8 15.9 130 67-219 21-151 (151)
27 PF14099 Polysacc_lyase: Polys 75.5 47 0.001 28.6 10.9 71 136-218 149-224 (224)
28 PF00354 Pentaxin: Pentaxin fa 73.4 30 0.00066 29.8 9.0 86 137-239 82-169 (195)
29 PF09224 DUF1961: Domain of un 62.0 35 0.00076 30.2 7.0 60 139-218 159-218 (218)
30 PF02973 Sialidase: Sialidase, 55.0 1.4E+02 0.0031 25.9 15.4 142 65-237 32-185 (190)
31 smart00282 LamG Laminin G doma 51.8 76 0.0016 24.6 7.0 73 138-220 61-134 (135)
32 PF02210 Laminin_G_2: Laminin 49.4 1.1E+02 0.0024 22.9 9.6 74 138-220 53-127 (128)
33 KOG1834 Calsyntenin [Extracell 46.3 24 0.00053 36.3 3.9 57 137-200 440-496 (952)
34 cd06526 metazoan_ACD Alpha-cry 31.1 1.1E+02 0.0025 22.0 4.6 44 33-79 18-61 (83)
35 cd06482 ACD_HspB10 Alpha cryst 31.0 90 0.0019 23.4 4.1 45 35-79 21-65 (87)
36 KOG4352 Fas-mediated apoptosis 30.0 1E+02 0.0023 25.9 4.6 37 128-165 92-128 (187)
37 cd06470 ACD_IbpA-B_like Alpha- 29.9 89 0.0019 23.1 3.9 45 34-79 23-71 (90)
38 PF11948 DUF3465: Protein of u 28.7 3.1E+02 0.0068 22.4 7.0 25 34-58 33-57 (131)
39 PF06832 BiPBP_C: Penicillin-B 26.4 80 0.0017 23.2 3.1 35 152-188 44-78 (89)
40 PF07691 PA14: PA14 domain; I 23.8 1.2E+02 0.0025 23.8 3.9 29 137-166 57-85 (145)
41 cd06464 ACD_sHsps-like Alpha-c 22.2 1.8E+02 0.0039 20.4 4.3 46 34-79 19-67 (88)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=3.6e-78 Score=546.39 Aligned_cols=247 Identities=54% Similarity=1.014 Sum_probs=230.6
Q ss_pred ccCccccCceeeecCCCeEEecCCcEEEEEEecCCCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeecCCCCCeE
Q 039255 21 SAGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEI 100 (267)
Q Consensus 21 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~~~~~~EI 100 (267)
+..+|.++|+++|+.+|+.+..+|..|+|+|++.+|++|+||+.|+||+||||||+|+|+++|+||||||++..+.++||
T Consensus 23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEI 102 (291)
T PLN03161 23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEI 102 (291)
T ss_pred ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeE
Confidence 45689999999999999999888888999999999999999999999999999999998889999999999976789999
Q ss_pred EEEEcCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCc
Q 039255 101 DFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLP 180 (267)
Q Consensus 101 DiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~P 180 (267)
|||++|+++++++++|+|+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 103 DiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~p 182 (291)
T PLN03161 103 DFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQG 182 (291)
T ss_pred EEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccc
Confidence 99999999889999999999999999999999999999999999999999999999999999999987766788998889
Q ss_pred cEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEec-------------C---Cchhc----cCCCHHHHHHHHHH
Q 039255 181 MRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKADG-------------S---RAWLL----QQMDSTNQRRLYWV 240 (267)
Q Consensus 181 m~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~-------------~---~~~~~----~~l~~~~~~~~~~~ 240 (267)
|+|++|||+|++|||+||++|+||+++||+|.|++|++++ . ..||+ ++|+++|+++|+||
T Consensus 183 M~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v 262 (291)
T PLN03161 183 MRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKV 262 (291)
T ss_pred eEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999975 0 23665 37999999999999
Q ss_pred hhCCeeeecccCCCCCCCCCCCCCcCC
Q 039255 241 QKNHMIYNYCTDTKRFPQGFPKECAVH 267 (267)
Q Consensus 241 ~~~~~~y~yc~d~~r~~~~~~~ec~~~ 267 (267)
|+|||+||||+|++|||.++||||.++
T Consensus 263 ~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 263 RDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred HhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 999999999999999998789999753
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=1.5e-77 Score=538.69 Aligned_cols=242 Identities=58% Similarity=1.109 Sum_probs=228.7
Q ss_pred cCccccCceeeecCCCeEEecCCcEEEEEEecCCCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeec-CCCCCeE
Q 039255 22 AGNFNEEFDITWGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-GPTWDEI 100 (267)
Q Consensus 22 ~~~f~~~f~~~w~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~-~~~~~EI 100 (267)
+.+|.++|.++|+++||++.++|+.|+|+|++++|++|+||+.|+||+||||||+|+|+++|+||||||+++ ||.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 467999999999999999988898999999999999999999999999999999999888999999999998 5899999
Q ss_pred EEEEcCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCc
Q 039255 101 DFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLP 180 (267)
Q Consensus 101 DiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~P 180 (267)
|||++|+.+++|+++|||+|.++.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999889999999999999888999999999999999999999999999999999999999988777788998899
Q ss_pred cEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEec-----------C---Cchhc----cCCCHHHHHHHHHHhh
Q 039255 181 MRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKADG-----------S---RAWLL----QQMDSTNQRRLYWVQK 242 (267)
Q Consensus 181 m~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~~-----------~---~~~~~----~~l~~~~~~~~~~~~~ 242 (267)
|+|++|||+||+|||+||++++||+++||+|.|++|+|++ . ..||+ ++|++.|+++|+|||+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRR 242 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 1 13665 4799999999999999
Q ss_pred CCeeeecccCCCCCCCCCCCCC
Q 039255 243 NHMIYNYCTDTKRFPQGFPKEC 264 (267)
Q Consensus 243 ~~~~y~yc~d~~r~~~~~~~ec 264 (267)
|||+||||+|++|||. +||||
T Consensus 243 ~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 243 NYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred CCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999995 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=7.7e-45 Score=316.67 Aligned_cols=179 Identities=31% Similarity=0.608 Sum_probs=155.2
Q ss_pred CceeeecCCCeEEecCCcEEEEEEecC-CCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeecCCCCCeEEEEEcC
Q 039255 28 EFDITWGDGHGKIFNNGQLLTLTLDRY-SGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLG 106 (267)
Q Consensus 28 ~f~~~w~~~nv~~~~~G~~l~L~l~~~-sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~~~~~~EIDiE~lG 106 (267)
.++++...++|.+.++| |.|+|++. +|++|+|+++|+||+||||||+|.+ +|+||||||+++ .++|||||++|
T Consensus 9 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G 82 (203)
T cd02183 9 SYDWTVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVG 82 (203)
T ss_pred cCccEecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecC
Confidence 35567788999996444 88999876 7999999999999999999999998 899999999988 67999999999
Q ss_pred CCCCCceEEEeeeecCCCC---CceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeeccc-CCcCCCCCCccE
Q 039255 107 NLSGQPYTVHTNVYSQGKG---DREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA-IGVPFPKNLPMR 182 (267)
Q Consensus 107 ~~~g~p~~~~tn~~~~g~g---~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~-~g~~~P~~~Pm~ 182 (267)
+ ++..+|+|+|.++.. ++.+.+.+.++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+
T Consensus 83 ~---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~ 158 (203)
T cd02183 83 G---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMR 158 (203)
T ss_pred C---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcE
Confidence 7 456899999976644 344567778888899999999999999999999999999987542 3567996 9999
Q ss_pred EEEeeeeCCC---------ccCCCCccccCCCCCCeEEEEeEEEEec
Q 039255 183 VYSSLWNADD---------WATRGGLIKTDWSQAPFTASYRNFKADG 220 (267)
Q Consensus 183 l~lnlw~gg~---------Wat~GG~~~~d~~~~Pf~~~~~~~~v~~ 220 (267)
|+||+|+||+ || ||+ +||+.+||+|.|++|+|.+
T Consensus 159 l~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~~ 201 (203)
T cd02183 159 LQIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVTD 201 (203)
T ss_pred EEEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEEe
Confidence 9999999985 99 886 5999999999999999975
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=8.1e-39 Score=280.14 Aligned_cols=172 Identities=31% Similarity=0.597 Sum_probs=146.0
Q ss_pred eeecCCCeEEecCCcEEEEEEecC-------CCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeec---CCCCCeE
Q 039255 31 ITWGDGHGKIFNNGQLLTLTLDRY-------SGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ---GPTWDEI 100 (267)
Q Consensus 31 ~~w~~~nv~~~~~G~~l~L~l~~~-------sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~---~~~~~EI 100 (267)
.+|.++||++. +|. |+|++.+. ++++|.|+.+|+||+||||||+|.+ +|+||||||++. +..++||
T Consensus 27 ~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~EI 102 (212)
T cd02175 27 CTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDEI 102 (212)
T ss_pred eeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCEE
Confidence 57889999995 676 88888543 4789999999999999999999987 899999999974 3457999
Q ss_pred EEEEcCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCc
Q 039255 101 DFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLP 180 (267)
Q Consensus 101 DiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~P 180 (267)
|||++|++ +..+++|+|.++.+.....+.+.++++++||+|+|+|+|++|+|||||+++++++..+ ..+|. +|
T Consensus 103 DiE~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~p 175 (212)
T cd02175 103 DIEFLGKD---TTKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-TP 175 (212)
T ss_pred EEEEccCC---CCEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-CC
Confidence 99999974 3468888887776666666777888999999999999999999999999999997643 35886 99
Q ss_pred cEEEEeeeeCC---CccCCCCccccCCCCCCeEEEEeEEEEe
Q 039255 181 MRVYSSLWNAD---DWATRGGLIKTDWSQAPFTASYRNFKAD 219 (267)
Q Consensus 181 m~l~lnlw~gg---~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 219 (267)
|+|+||+|.|+ +|+ |. +|. .+|+.|.||+|||.
T Consensus 176 ~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 176 GKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred cEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 99999999985 598 54 366 88999999999985
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=4.4e-36 Score=255.78 Aligned_cols=174 Identities=35% Similarity=0.668 Sum_probs=148.1
Q ss_pred cCceeeecCCCeEEecCCcEEEEEEec-----CCCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeec--CCCCCe
Q 039255 27 EEFDITWGDGHGKIFNNGQLLTLTLDR-----YSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ--GPTWDE 99 (267)
Q Consensus 27 ~~f~~~w~~~nv~~~~~G~~l~L~l~~-----~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~--~~~~~E 99 (267)
+.+.++|+++||.+. +|..|.|++++ .++++|+|++.++||+||+|||++.+ +|++|||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 568899999999995 55449999876 57899999999999999999999877 899999999753 689999
Q ss_pred EEEEEcCCCCCCceEEEeeeecCCCCCc--eeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCC
Q 039255 100 IDFEFLGNLSGQPYTVHTNVYSQGKGDR--EQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPK 177 (267)
Q Consensus 100 IDiE~lG~~~g~p~~~~tn~~~~g~g~~--~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~ 177 (267)
||||++|+.+ ..+++|+|..+.+.. +..+.+..++.++||+|+|+|+|++|+|||||++++++......+.++|.
T Consensus 80 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDP---TQVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTST---TEEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhccccc---cceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 9999999854 359999998887665 45667778899999999999999999999999999999987654345887
Q ss_pred CCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 039255 178 NLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFK 217 (267)
Q Consensus 178 ~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 217 (267)
..||+|.+++|.|++|++..| .|.|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 689999999999998884333 67888876
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=4.8e-34 Score=247.60 Aligned_cols=171 Identities=37% Similarity=0.576 Sum_probs=141.8
Q ss_pred eeeecCCCeEEecCCcEEEEEEecC------CCceEEE-ceeeEeEEEEEEEEecCCCCcceEEEEEeeec---CCCCCe
Q 039255 30 DITWGDGHGKIFNNGQLLTLTLDRY------SGSGFQS-KKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ---GPTWDE 99 (267)
Q Consensus 30 ~~~w~~~nv~~~~~G~~l~L~l~~~------sG~~i~S-k~~~~YG~~eariKlp~g~s~G~v~Afwl~~~---~~~~~E 99 (267)
...|.++||.+.++|. |.|++.+. ++++|.| ++.|+||+||+|||++.+ .|+|+||||++. ++..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3578899999976576 88887543 5689999 999999999999999987 899999999997 367999
Q ss_pred EEEEEcCCCCCCceEEEeeeecCCCC-----CceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcC
Q 039255 100 IDFEFLGNLSGQPYTVHTNVYSQGKG-----DREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVP 174 (267)
Q Consensus 100 IDiE~lG~~~g~p~~~~tn~~~~g~g-----~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~ 174 (267)
||||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999874 44688888876543 2233455666678999999999999999999999999998643
Q ss_pred CCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEE
Q 039255 175 FPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKA 218 (267)
Q Consensus 175 ~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 218 (267)
.|. +||+|+||+|.+++|+ +. .+....|..|.||+|||
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~--~~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWW--WG---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CCC-CCcEEEEEEEECCCCc--cc---CCCCCCCcEEEEEEEEE
Confidence 676 9999999999999987 22 24567899999999997
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=2.6e-34 Score=258.81 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=135.5
Q ss_pred cCCCeEEecCCcEEEEEEecC-----------CCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeec-CCCCCeEE
Q 039255 34 GDGHGKIFNNGQLLTLTLDRY-----------SGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-GPTWDEID 101 (267)
Q Consensus 34 ~~~nv~~~~~G~~l~L~l~~~-----------sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~-~~~~~EID 101 (267)
.++||.+ .+|+ |.|++.+. ++++|.||+.++||+||||||+|.+ . .+|||||++. ++.++|||
T Consensus 56 ~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEE
Confidence 3578877 5787 77877543 3578999999999999999999976 3 5899999996 67899999
Q ss_pred E-EEcCCCC--CCceEEEeeeecCCCC-----Cc---eeeEeecCCCCCCcEEEEEEEc-CCceEEEECCeeEEEEeecc
Q 039255 102 F-EFLGNLS--GQPYTVHTNVYSQGKG-----DR---EQQFHLWFDPTVNFHTYSVLWN-PQRIVFSVDGIPIREFKNLE 169 (267)
Q Consensus 102 i-E~lG~~~--g~p~~~~tn~~~~g~g-----~~---~~~~~l~~d~~~dfHtY~i~Wt-p~~I~fyVDG~~v~~~~~~~ 169 (267)
| |++|... ..+..+|+++|....+ .+ ...+...++.+++||+|+|+|+ |++|+|||||++++++++.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 8 9999753 1234688887643221 11 1234455667899999999999 99999999999999998754
Q ss_pred cCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 039255 170 AIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKAD 219 (267)
Q Consensus 170 ~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 219 (267)
. ...+|+++||+|+||+++|| |+...+.. ..-...|..|.||+|||.
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 34567789999999999998 98210121 122456999999999984
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=9.4e-34 Score=250.92 Aligned_cols=177 Identities=25% Similarity=0.430 Sum_probs=141.5
Q ss_pred eeecCCCeEEecCCcEEEEEEecC----------CCceEEE--ceeeEeEEEEEEEEecCCCCcceEEEEEeeec-----
Q 039255 31 ITWGDGHGKIFNNGQLLTLTLDRY----------SGSGFQS--KKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ----- 93 (267)
Q Consensus 31 ~~w~~~nv~~~~~G~~l~L~l~~~----------sG~~i~S--k~~~~YG~~eariKlp~g~s~G~v~Afwl~~~----- 93 (267)
..+.++||.+ .+|. |.|+..+. ++++|.| ++.|+||+||||||+|.+ +|++|||||++.
T Consensus 33 ~~~~~~nv~v-~~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 3567889988 5787 77876432 3578999 899999999999999988 899999999985
Q ss_pred -CCCCCeEEE-EEcCCCCCCceEEEeeeecCCCC----CceeeEeecC-CCCCCcEEEEEEEcCCceEEEECCeeEEEEe
Q 039255 94 -GPTWDEIDF-EFLGNLSGQPYTVHTNVYSQGKG----DREQQFHLWF-DPTVNFHTYSVLWNPQRIVFSVDGIPIREFK 166 (267)
Q Consensus 94 -~~~~~EIDi-E~lG~~~g~p~~~~tn~~~~g~g----~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~ 166 (267)
||.++|||| |++|+. +..+++++|..+.. .....+.... +..++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 477899998 999985 44788888876643 2233455544 6889999999999999999999999999998
Q ss_pred ecccCC-cCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEE
Q 039255 167 NLEAIG-VPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKA 218 (267)
Q Consensus 167 ~~~~~g-~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 218 (267)
+..... ..+|+++||+|+||++++|+|+ |.. ......|..|.||+|||
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrv 234 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRV 234 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEE
Confidence 764321 2356669999999999999998 431 23457799999999998
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=100.00 E-value=1.6e-31 Score=241.76 Aligned_cols=170 Identities=26% Similarity=0.330 Sum_probs=126.9
Q ss_pred CCCeEEecCCcEEEEEEecC-------------------CCceEEEceeeEeEEEEEEEEecC-CCCcceEEEEEeeec-
Q 039255 35 DGHGKIFNNGQLLTLTLDRY-------------------SGSGFQSKKQYLFGKIDMQLKLVP-RNSAGTVTAYYLRSQ- 93 (267)
Q Consensus 35 ~~nv~~~~~G~~l~L~l~~~-------------------sG~~i~Sk~~~~YG~~eariKlp~-g~s~G~v~Afwl~~~- 93 (267)
++||.+ .||. |.|++.+. +++.+.||++|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 468877 6898 77776432 457899999999999999999865 5 799999999974
Q ss_pred --------CCCCCeEEE-EEcCCCC---CCce----EEEeeeecCCCCC--c--------eeeEeecCCCCCCcEEEEEE
Q 039255 94 --------GPTWDEIDF-EFLGNLS---GQPY----TVHTNVYSQGKGD--R--------EQQFHLWFDPTVNFHTYSVL 147 (267)
Q Consensus 94 --------~~~~~EIDi-E~lG~~~---g~p~----~~~tn~~~~g~g~--~--------~~~~~l~~d~~~dfHtY~i~ 147 (267)
||.++|||| |.+|... +++. .+|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 688999999 8887531 2223 4565555444321 1 12355677899999999999
Q ss_pred EcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCC---------CccCCCCccccCCCCCCeEEEEeEEEE
Q 039255 148 WNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNAD---------DWATRGGLIKTDWSQAPFTASYRNFKA 218 (267)
Q Consensus 148 Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---------~Wat~GG~~~~d~~~~Pf~~~~~~~~v 218 (267)
|+|++|+|||||++++++.+. +.. +||++.+++-... .|+ |+.. +.+..|..|.||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w~-~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~--~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YWH-RPMNVTLSLGLRKPFVKFFDNKNNA--KARE--KASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------ccc-cccEEeeccccCcchhhhhccccCC--CCCC--ccCcCCceEEEEEEEE
Confidence 999999999999999998642 333 7888888875543 244 4432 4567899999999998
Q ss_pred e
Q 039255 219 D 219 (267)
Q Consensus 219 ~ 219 (267)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 3
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.1e-31 Score=245.52 Aligned_cols=181 Identities=21% Similarity=0.199 Sum_probs=126.8
Q ss_pred eecCCCeEEecCCcEEEEEEec-------CCCceEEE--ceeeEeEEEEEEEEecCC-CCcceEEEEEeeec--------
Q 039255 32 TWGDGHGKIFNNGQLLTLTLDR-------YSGSGFQS--KKQYLFGKIDMQLKLVPR-NSAGTVTAYYLRSQ-------- 93 (267)
Q Consensus 32 ~w~~~nv~~~~~G~~l~L~l~~-------~sG~~i~S--k~~~~YG~~eariKlp~g-~s~G~v~Afwl~~~-------- 93 (267)
.+.++||.+ .+|. |.|++.+ .++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 37 ~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 456789877 6888 7777643 25688999 788999999999999973 13799999999983
Q ss_pred -----CCC------CCeEEE-EEcCCCCC-CceE---E----------------EeeeecC------C-CCCcee-eE--
Q 039255 94 -----GPT------WDEIDF-EFLGNLSG-QPYT---V----------------HTNVYSQ------G-KGDREQ-QF-- 131 (267)
Q Consensus 94 -----~~~------~~EIDi-E~lG~~~g-~p~~---~----------------~tn~~~~------g-~g~~~~-~~-- 131 (267)
||. ++|||| |.+|.+.. ...+ + +..+|.. . .++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 775 499998 99985320 0111 1 1111210 0 011101 00
Q ss_pred --eecC----CCCCCcEEEEEEEcC-----CceEEEECCeeEEEEeecccCC------cCCCCCCccEEEEeeeeCCCcc
Q 039255 132 --HLWF----DPTVNFHTYSVLWNP-----QRIVFSVDGIPIREFKNLEAIG------VPFPKNLPMRVYSSLWNADDWA 194 (267)
Q Consensus 132 --~l~~----d~~~dfHtY~i~Wtp-----~~I~fyVDG~~v~~~~~~~~~g------~~~P~~~Pm~l~lnlw~gg~Wa 194 (267)
.+.. ...++||+|+|+|+| ++|+|||||+++++++..+... ..+| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 135789999999999 8999999999999998653211 2355 49999999999999997
Q ss_pred CCCCccccCCCCCCeEEEEeEEEEe
Q 039255 195 TRGGLIKTDWSQAPFTASYRNFKAD 219 (267)
Q Consensus 195 t~GG~~~~d~~~~Pf~~~~~~~~v~ 219 (267)
|. +.+-...|..|.||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 43 2345677999999999984
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.98 E-value=5.3e-31 Score=237.37 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=126.5
Q ss_pred eecCCCeEEecCCcEEEEEEecC-----CCceEEEceeeE--e----EEEEEEEEecCCC---CcceEEEEEeeec----
Q 039255 32 TWGDGHGKIFNNGQLLTLTLDRY-----SGSGFQSKKQYL--F----GKIDMQLKLVPRN---SAGTVTAYYLRSQ---- 93 (267)
Q Consensus 32 ~w~~~nv~~~~~G~~l~L~l~~~-----sG~~i~Sk~~~~--Y----G~~eariKlp~g~---s~G~v~Afwl~~~---- 93 (267)
+++++|+.+..+|. |.|++.+. ++++|.|+.++. | |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 56678998865887 77776443 457899975543 3 4899999999741 2699999999984
Q ss_pred ----CCCCCeEEE-EEcCCCCCCceEEEeeeecCC-CC--Cceee-Eee-cCCCCCCcEEEEEEEcC-----CceEEEEC
Q 039255 94 ----GPTWDEIDF-EFLGNLSGQPYTVHTNVYSQG-KG--DREQQ-FHL-WFDPTVNFHTYSVLWNP-----QRIVFSVD 158 (267)
Q Consensus 94 ----~~~~~EIDi-E~lG~~~g~p~~~~tn~~~~g-~g--~~~~~-~~l-~~d~~~dfHtY~i~Wtp-----~~I~fyVD 158 (267)
||.++|||| |..|.. +. ++.++|... .+ ..+.. ... .....++||+|+|+|+| ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~---~~-~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGL---ST-GYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCC---Cc-eEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 788999998 999863 22 333444322 11 11111 110 11245799999999997 99999999
Q ss_pred CeeEEEEeecccC---CcCCCCCCccEEEEeeeeCCCccCCCCccc-cCCCCCCeEEEEeEEEEe
Q 039255 159 GIPIREFKNLEAI---GVPFPKNLPMRVYSSLWNADDWATRGGLIK-TDWSQAPFTASYRNFKAD 219 (267)
Q Consensus 159 G~~v~~~~~~~~~---g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~-~d~~~~Pf~~~~~~~~v~ 219 (267)
|+++++++..... ..+.|+++||+|+||+++||+|+ |.+. ..-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~---~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP---GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC---CCCCcccccCCCceEEEEEEEEe
Confidence 9999999764221 11234469999999999999998 3321 112356999999999984
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.97 E-value=4.2e-30 Score=238.96 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=105.2
Q ss_pred CceEEE--ceeeEeEEEEEEEEecCCCCcceEEEEEeeec------CCCCCeEEE-EEcCCCCCCc-------eEEEeee
Q 039255 56 GSGFQS--KKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ------GPTWDEIDF-EFLGNLSGQP-------YTVHTNV 119 (267)
Q Consensus 56 G~~i~S--k~~~~YG~~eariKlp~g~s~G~v~Afwl~~~------~~~~~EIDi-E~lG~~~g~p-------~~~~tn~ 119 (267)
+++|.| |++|+|||||||||||.| .|+||||||++. ||.++|||| |.+|+....+ ..++.++
T Consensus 101 Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~tl 178 (330)
T cd08024 101 SARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGSTL 178 (330)
T ss_pred EEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEEE
Confidence 466788 688999999999999998 799999999984 789999998 9999753221 2456666
Q ss_pred ecCCCCC----cee---eEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeecc-------------------cCCc
Q 039255 120 YSQGKGD----REQ---QFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLE-------------------AIGV 173 (267)
Q Consensus 120 ~~~g~g~----~~~---~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~-------------------~~g~ 173 (267)
|...... +.. ......+.+++||+|+|+|+|++|+|||||+++++++... ....
T Consensus 179 H~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~~ 258 (330)
T cd08024 179 HWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGGK 258 (330)
T ss_pred EeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccCc
Confidence 6432211 111 1112245678999999999999999999999999998521 1124
Q ss_pred CCCCCCccEEEEeeeeCCCcc
Q 039255 174 PFPKNLPMRVYSSLWNADDWA 194 (267)
Q Consensus 174 ~~P~~~Pm~l~lnlw~gg~Wa 194 (267)
.+|+++|++|+|||++||.|.
T Consensus 259 ~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 259 MAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred CCCCCCCEEEEEEEEecCCCC
Confidence 579999999999999999885
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.97 E-value=1.5e-29 Score=234.35 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=99.0
Q ss_pred CceEEE--ceeeEeEEEEEEEEecCCCCcceEEEEEeeec------C-CCCCeEEE-EEcCCCCCC---c----eEEEee
Q 039255 56 GSGFQS--KKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ------G-PTWDEIDF-EFLGNLSGQ---P----YTVHTN 118 (267)
Q Consensus 56 G~~i~S--k~~~~YG~~eariKlp~g~s~G~v~Afwl~~~------~-~~~~EIDi-E~lG~~~g~---p----~~~~tn 118 (267)
+|+|.| +++|+|||+|||||||.| .|+||||||++. | |.++|||| |.+|+..-. . ..+|..
T Consensus 98 Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~g 175 (321)
T cd02179 98 SARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYGG 175 (321)
T ss_pred eeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEcc
Confidence 467888 588999999999999999 699999999985 4 78999999 999985210 1 123333
Q ss_pred eecCCCC-Ccee---eEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeeccc----------------CCcCCCCC
Q 039255 119 VYSQGKG-DREQ---QFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEA----------------IGVPFPKN 178 (267)
Q Consensus 119 ~~~~g~g-~~~~---~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~----------------~g~~~P~~ 178 (267)
.|..... .+.. ......+.+++||+|+|+|+|++|+|||||++++++..... .....|++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPFD 255 (321)
T cd02179 176 PVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPFD 255 (321)
T ss_pred cccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCCC
Confidence 3321111 1110 11112356789999999999999999999999999986421 12346999
Q ss_pred CccEEEEeeeeCC
Q 039255 179 LPMRVYSSLWNAD 191 (267)
Q Consensus 179 ~Pm~l~lnlw~gg 191 (267)
+|++|+|||++||
T Consensus 256 ~~FyliLNlAVGG 268 (321)
T cd02179 256 KEFYLSLGVGVGG 268 (321)
T ss_pred CCeEEEEEEEecC
Confidence 9999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5.2e-25 Score=205.89 Aligned_cols=157 Identities=27% Similarity=0.444 Sum_probs=129.3
Q ss_pred ceeeecCCCeEEecCCcEEEEEEec-------CCCceEEEcee--eEeEEEEEEEEecCCCCcceEEEEEeeec----CC
Q 039255 29 FDITWGDGHGKIFNNGQLLTLTLDR-------YSGSGFQSKKQ--YLFGKIDMQLKLVPRNSAGTVTAYYLRSQ----GP 95 (267)
Q Consensus 29 f~~~w~~~nv~~~~~G~~l~L~l~~-------~sG~~i~Sk~~--~~YG~~eariKlp~g~s~G~v~Afwl~~~----~~ 95 (267)
.++.|..+++.+..+|. |.|.+++ +++++++|..+ |+||++|+|||+|.+ .|+||||||++. +.
T Consensus 72 ~~~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~ 148 (355)
T COG2273 72 KNLTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGG 148 (355)
T ss_pred cccceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCC
Confidence 34477777787766665 7777643 46788998766 999999999999976 899999999984 34
Q ss_pred CCCeEEEEEcCCCCCCceEEEeeeecCCCCCceeeEeecC-CCCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcC
Q 039255 96 TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWF-DPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVP 174 (267)
Q Consensus 96 ~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~~-d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~ 174 (267)
..+|||||++|++.. +..+|+|.+.++.++.+....+.+ +..++||+|+++|.+++|+|||||++++++... ..
T Consensus 149 wp~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~ 223 (355)
T COG2273 149 WPDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DY 223 (355)
T ss_pred CCcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----cc
Confidence 568999999997643 346999999988887777777777 888999999999999999999999999998753 34
Q ss_pred CCCCCccEEEEeeeeCCCcc
Q 039255 175 FPKNLPMRVYSSLWNADDWA 194 (267)
Q Consensus 175 ~P~~~Pm~l~lnlw~gg~Wa 194 (267)
.|. .||++++|+|.++.+.
T Consensus 224 ~~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 224 IPQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred CcC-CcceeEEeecccCccC
Confidence 587 8999999999997653
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.72 E-value=2.7e-18 Score=117.80 Aligned_cols=43 Identities=49% Similarity=1.139 Sum_probs=35.8
Q ss_pred CchhccC---CCHHHHHHHHHHhhCCeeeecccCCCCCCCCCCCCC
Q 039255 222 RAWLLQQ---MDSTNQRRLYWVQKNHMIYNYCTDTKRFPQGFPKEC 264 (267)
Q Consensus 222 ~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 264 (267)
..||++. |++.|+++|+|||+||||||||.|++|||.++|+||
T Consensus 6 ~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 6 KSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred cccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 4688765 999999999999999999999999999998779999
No 16
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.71 E-value=8.1e-17 Score=155.11 Aligned_cols=178 Identities=24% Similarity=0.333 Sum_probs=119.4
Q ss_pred cCCCeEEecCCcEEEEEEecC-------CCceEEE--ceeeEeEEEEEEEEecCC-CCcceEEEEEeeec----------
Q 039255 34 GDGHGKIFNNGQLLTLTLDRY-------SGSGFQS--KKQYLFGKIDMQLKLVPR-NSAGTVTAYYLRSQ---------- 93 (267)
Q Consensus 34 ~~~nv~~~~~G~~l~L~l~~~-------sG~~i~S--k~~~~YG~~eariKlp~g-~s~G~v~Afwl~~~---------- 93 (267)
.++.|.. .+|. |.|++++. .++.++| |+-|+-|++|++++||.. +..|+|||||++++
T Consensus 159 ~p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast 236 (504)
T PF03935_consen 159 DPDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGAST 236 (504)
T ss_pred cCCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCcccccccc
Confidence 3566644 6787 88888642 3566777 788899999999999853 36899999999973
Q ss_pred ---CC---------------------------------------------CCCeEEE-EEcCCCC-CCceE---EEee--
Q 039255 94 ---GP---------------------------------------------TWDEIDF-EFLGNLS-GQPYT---VHTN-- 118 (267)
Q Consensus 94 ---~~---------------------------------------------~~~EIDi-E~lG~~~-g~p~~---~~tn-- 118 (267)
|| ...|||| |...... +...+ +|..
T Consensus 237 ~g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~ 316 (504)
T PF03935_consen 237 DGMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPF 316 (504)
T ss_pred CceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeeccc
Confidence 21 1239997 8764321 10111 1211
Q ss_pred ------------eecCC-------CCCceee-Ee----ec---C--CCCCCcEEEEEEEcCC-----ceEEEECCeeEEE
Q 039255 119 ------------VYSQG-------KGDREQQ-FH----LW---F--DPTVNFHTYSVLWNPQ-----RIVFSVDGIPIRE 164 (267)
Q Consensus 119 ------------~~~~g-------~g~~~~~-~~----l~---~--d~~~dfHtY~i~Wtp~-----~I~fyVDG~~v~~ 164 (267)
+|... .|+.-|+ +. +. + ....+||+|++||.|. .|+|+|||+++.+
T Consensus 317 d~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twt 396 (504)
T PF03935_consen 317 DIWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWT 396 (504)
T ss_pred ccCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEE
Confidence 01000 0111111 11 11 1 1237899999999874 8999999999999
Q ss_pred EeecccC------CcCCCCCCccEEEEeeeeCCCccCCCCccccCCC--CCCeEEEEeEEEEec
Q 039255 165 FKNLEAI------GVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWS--QAPFTASYRNFKADG 220 (267)
Q Consensus 165 ~~~~~~~------g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~--~~Pf~~~~~~~~v~~ 220 (267)
+...... ...+|. .||+|+|||....+|+ . +||. ..|.+|.||+|||.-
T Consensus 397 i~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~----~--vd~~~L~FP~~M~IDYVRVYQ 453 (504)
T PF03935_consen 397 INAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG----Y--VDWNHLCFPATMRIDYVRVYQ 453 (504)
T ss_pred EEhhhcCCCCCcCccccCc-CCceeeeccccccccC----c--cccccccccceEEEeEEEEec
Confidence 9876432 245887 9999999999999995 3 4776 468999999999965
No 17
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.69 E-value=3e-16 Score=142.76 Aligned_cols=168 Identities=24% Similarity=0.348 Sum_probs=108.2
Q ss_pred ccCccccCceeeec------------------CCCeEEecCCcEEEEEEecCC---------CceEEEceeeEeEEEEEE
Q 039255 21 SAGNFNEEFDITWG------------------DGHGKIFNNGQLLTLTLDRYS---------GSGFQSKKQYLFGKIDMQ 73 (267)
Q Consensus 21 ~~~~f~~~f~~~w~------------------~~nv~~~~~G~~l~L~l~~~s---------G~~i~Sk~~~~YG~~ear 73 (267)
.+.+|+++|++.=. ...+++ .+|. |.|.+++.+ +++|.||+.|.+|++|+|
T Consensus 9 ~g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~v-~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~ 86 (293)
T cd02181 9 DGSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAYV-NSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIAD 86 (293)
T ss_pred cCCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeEe-eCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEE
Confidence 35689999985221 223444 4566 888886532 467999999999999999
Q ss_pred E-EecCCCCcceEEEEEeeec-CCCCCeEEE-EEcCCCCCCceEEEeee----ecCC--CC-------------Cce---
Q 039255 74 L-KLVPRNSAGTVTAYYLRSQ-GPTWDEIDF-EFLGNLSGQPYTVHTNV----YSQG--KG-------------DRE--- 128 (267)
Q Consensus 74 i-Klp~g~s~G~v~Afwl~~~-~~~~~EIDi-E~lG~~~g~p~~~~tn~----~~~g--~g-------------~~~--- 128 (267)
+ |||.+ .|+||||||++. ||..+|||| |.++..+....++||.- -..+ .+ +..
T Consensus 87 ~~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v 164 (293)
T cd02181 87 IAHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGV 164 (293)
T ss_pred hhhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCcee
Confidence 7 99988 899999999987 999999998 99986433333455431 0000 00 000
Q ss_pred -----eeEeecCCCCCCcEEEEEEEcCCceEEEEC---CeeEEEEeecccC-------CcCCCCC--------CccEEEE
Q 039255 129 -----QQFHLWFDPTVNFHTYSVLWNPQRIVFSVD---GIPIREFKNLEAI-------GVPFPKN--------LPMRVYS 185 (267)
Q Consensus 129 -----~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVD---G~~v~~~~~~~~~-------g~~~P~~--------~Pm~l~l 185 (267)
..+-..|+.. +=-+|+++|+.+.|+.+.- .+| ..++....+ -..||.. ++++|++
T Consensus 165 ~~~~~~syG~~FN~~-GGGvyA~ew~~~~I~vWff~R~~iP-~di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVf 242 (293)
T cd02181 165 TSTSTNSYGAGFNAA-GGGVYAMEWTSDGIKVWFFPRGSIP-ADITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVF 242 (293)
T ss_pred ecCCCCccccccccC-CCcEEEEEEccCcEEEEEecCCCCC-cccccCCCCCcccCcccccCCCCCCChhHhcccCEEEE
Confidence 1122233333 3379999999999985552 222 222221111 1224421 7899999
Q ss_pred eeeeCCCcc
Q 039255 186 SLWNADDWA 194 (267)
Q Consensus 186 nlw~gg~Wa 194 (267)
|+-.=|+||
T Consensus 243 n~tfCGdwA 251 (293)
T cd02181 243 DTTFCGDWA 251 (293)
T ss_pred Eeecccccc
Confidence 999999999
No 18
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=95.64 E-value=0.51 Score=37.13 Aligned_cols=74 Identities=7% Similarity=0.160 Sum_probs=42.9
Q ss_pred CCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEE
Q 039255 138 TVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFK 217 (267)
Q Consensus 138 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~ 217 (267)
...||..++-|....+.+||||+++.+...... ...+ ....+ -.|+.. ....+|...+++++
T Consensus 84 ~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~--~~~~~----~iG~~~----------~~~~~~~g~i~~~~ 145 (157)
T PF13385_consen 84 DNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLN--SNGPL----FIGGSG----------GGSSPFNGYIDDLR 145 (157)
T ss_dssp TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTT--SCCEE----EESS-S----------TT--B-EEEEEEEE
T ss_pred CCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCC--CcceE----EEeecC----------CCCCceEEEEEEEE
Confidence 578999999999999999999998865433211 0111 11122 122221 22568999999999
Q ss_pred EecCCchhccCCCHHHHH
Q 039255 218 ADGSRAWLLQQMDSTNQR 235 (267)
Q Consensus 218 v~~~~~~~~~~l~~~~~~ 235 (267)
| ++..|+++|++
T Consensus 146 i------~~~aLt~~eI~ 157 (157)
T PF13385_consen 146 I------YNRALTAEEIQ 157 (157)
T ss_dssp E------ESS---HHHHH
T ss_pred E------ECccCCHHHcC
Confidence 8 44568887764
No 19
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=92.76 E-value=1.2 Score=37.17 Aligned_cols=121 Identities=17% Similarity=0.262 Sum_probs=61.8
Q ss_pred EecCCcEEEEEE--ecCCCceEEEceeeEeEEEEEEEEecCCCCcceEEEEEeeec-------CCCCCeEEEEEcCCCCC
Q 039255 40 IFNNGQLLTLTL--DRYSGSGFQSKKQYLFGKIDMQLKLVPRNSAGTVTAYYLRSQ-------GPTWDEIDFEFLGNLSG 110 (267)
Q Consensus 40 ~~~~G~~l~L~l--~~~sG~~i~Sk~~~~YG~~eariKlp~g~s~G~v~Afwl~~~-------~~~~~EIDiE~lG~~~g 110 (267)
...||. |. .. ....++-+.++..|.=..+++.+|+.++. -.++++... +...-|+.|.--+....
T Consensus 27 ~v~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~~----~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~ 100 (185)
T PF06439_consen 27 SVKDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPGG----NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTG 100 (185)
T ss_dssp EEETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCST
T ss_pred EeeCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCCC----CeEEEEEeccccCCCCcceEEEEEEECCCCccC
Confidence 346885 33 11 22335668888877777899999984432 333333332 23455777643222100
Q ss_pred CceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEEeec
Q 039255 111 QPYTVHTNVYSQGKGDREQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREFKNL 168 (267)
Q Consensus 111 ~p~~~~tn~~~~g~g~~~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~ 168 (267)
.+ .....++.. .............+..+||++.|.-..++|+.+|||++|.++...
T Consensus 101 ~~-~~~G~~~~~-~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 101 LP-NSTGSLYDE-PPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp TT-TSTTSBTTT-B-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred CC-CccceEEEe-ccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 00 000001100 000000001112346799999999999999999999999888754
No 20
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=91.58 E-value=8.2 Score=33.20 Aligned_cols=85 Identities=15% Similarity=0.220 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEEc--CCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 039255 137 PTVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYR 214 (267)
Q Consensus 137 ~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 214 (267)
....||...+.|+ ..++.+||||+++.+-. . ..+..++. ...|+|.--- ..+ ||.. + ..-.|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~-~-~~~~~~~~--~g~l~lG~~q-~~~---gg~~--~-~~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS-L-KKGYTVGP--GGSIILGQEQ-DSY---GGGF--D-ATQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc-c-cCCCEECC--CCeEEEeecc-cCC---CCCC--C-CCcceEEEEc
Confidence 4678999999998 45799999999875432 1 11222332 2234433210 111 3432 3 2357999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHH
Q 039255 215 NFKADGSRAWLLQQMDSTNQRRLY 238 (267)
Q Consensus 215 ~~~v~~~~~~~~~~l~~~~~~~~~ 238 (267)
+|+| |+..|+++|+++|.
T Consensus 157 ~v~i------w~~~Ls~~eI~~l~ 174 (201)
T cd00152 157 DVNM------WDSVLSPEEIKNVY 174 (201)
T ss_pred eeEE------EcccCCHHHHHHHH
Confidence 9997 56689999998875
No 21
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=91.19 E-value=9.3 Score=33.08 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=53.8
Q ss_pred CCCCcEEEEEEEc--CCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 039255 137 PTVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYR 214 (267)
Q Consensus 137 ~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 214 (267)
....||...+.|+ ..++.+||||+++. ...-..+..++ .+..|+|.- .-+.+ ||.. + ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~--~~~~~~g~~i~--~~G~lvlGq-~qd~~---gg~f--~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGV--RKGLAKGYTVK--PGGSIILGQ-EQDSY---GGGF--D-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEcc--cccccCCcEEC--CCCEEEEEe-cccCC---CCCC--C-CCcceeEEEe
Confidence 3568999999997 45699999999862 11111122233 233444443 12222 3432 3 3456999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHH
Q 039255 215 NFKADGSRAWLLQQMDSTNQRRLY 238 (267)
Q Consensus 215 ~~~v~~~~~~~~~~l~~~~~~~~~ 238 (267)
+|+| |+..|+++|+++|.
T Consensus 157 ~v~i------w~~~Ls~~eI~~l~ 174 (206)
T smart00159 157 DLNM------WDSVLSPEEIKSVY 174 (206)
T ss_pred eeEE------ecccCCHHHHHHHH
Confidence 9997 66789999998876
No 22
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=91.05 E-value=4.5 Score=34.38 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCcceEEEEEeeecCCCCCeEEEEEcCCCCCCceEEEeeeecCCCCCceeeEeec-C-CCCCCcEEEEE
Q 039255 69 KIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLW-F-DPTVNFHTYSV 146 (267)
Q Consensus 69 ~~eariKlp~g~s~G~v~Afwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~-~-d~~~dfHtY~i 146 (267)
.+.+.+|..+. +.|+.-++.-- ....++-++..|.. + .+. ++..+..+..+..... . -....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~---~~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA---QNVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC---CCcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 36677777543 35655444331 23345555665542 1 233 2222222222222211 1 23568999999
Q ss_pred EEcCCceEEEECCeeEEEEe
Q 039255 147 LWNPQRIVFSVDGIPIREFK 166 (267)
Q Consensus 147 ~Wtp~~I~fyVDG~~v~~~~ 166 (267)
.+..+.+++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987754
No 23
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=87.67 E-value=1 Score=38.83 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=24.6
Q ss_pred CCcEEEEEEEcC--CceEEEECCeeEEEE
Q 039255 139 VNFHTYSVLWNP--QRIVFSVDGIPIREF 165 (267)
Q Consensus 139 ~dfHtY~i~Wtp--~~I~fyVDG~~v~~~ 165 (267)
.+||.|.|.-.| ..-.|||||++|.+.
T Consensus 92 ~gyH~Y~i~~~p~~~tASfy~DG~lI~tw 120 (198)
T PF09264_consen 92 HGYHKYEIVFSPLTNTASFYFDGTLIATW 120 (198)
T ss_dssp CSEEEEEEEEETTTTEEEEEETTEEEEEE
T ss_pred cceeEEEEEecCCCCceEEEECCEEEeec
Confidence 589999999987 789999999999985
No 24
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=87.52 E-value=2.7 Score=37.62 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=47.5
Q ss_pred EEEEEEecCCC-----CcceEEEEEeeec---------------CC-CCCeEEE-EEcCCCCCCceEEEeeeec-CCCCC
Q 039255 70 IDMQLKLVPRN-----SAGTVTAYYLRSQ---------------GP-TWDEIDF-EFLGNLSGQPYTVHTNVYS-QGKGD 126 (267)
Q Consensus 70 ~eariKlp~g~-----s~G~v~Afwl~~~---------------~~-~~~EIDi-E~lG~~~g~p~~~~tn~~~-~g~g~ 126 (267)
|-.+++||... ...=.||+||+.. |. .++|+|| |.|... +. .+.+.+|. +|..+
T Consensus 103 Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g--~~-k~~St~H~~qG~~~ 179 (235)
T PF10287_consen 103 FLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSG--DD-KLKSTFHDYQGTDD 179 (235)
T ss_pred EEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCC--Cc-eeEEEEecccCccc
Confidence 67788888731 1345799999973 43 6999998 999653 22 56666664 33211
Q ss_pred c--eeeEeecC-CCCCCcEEEEEEEcCC
Q 039255 127 R--EQQFHLWF-DPTVNFHTYSVLWNPQ 151 (267)
Q Consensus 127 ~--~~~~~l~~-d~~~dfHtY~i~Wtp~ 151 (267)
. ...-...| .|++..-++++.++.+
T Consensus 180 ~~~g~G~~~yf~RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 180 INGGGGSSDYFKRPTSGTMKVAVIFDSS 207 (235)
T ss_pred cCCCCCCCCcccCCCCCCeEEEEEEcCC
Confidence 0 00011122 2667778888888643
No 25
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=85.50 E-value=17 Score=28.96 Aligned_cols=66 Identities=11% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCCCcEEEEEEEcC--CceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 039255 137 PTVNFHTYSVLWNP--QRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYR 214 (267)
Q Consensus 137 ~~~dfHtY~i~Wtp--~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 214 (267)
+...||...+-++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 789999999988654321 1222233333211111 11 12347889999
Q ss_pred EEEEe
Q 039255 215 NFKAD 219 (267)
Q Consensus 215 ~~~v~ 219 (267)
.++|.
T Consensus 122 evriy 126 (133)
T smart00560 122 EVRVY 126 (133)
T ss_pred EEEEe
Confidence 99984
No 26
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=76.37 E-value=35 Score=26.76 Aligned_cols=130 Identities=16% Similarity=0.100 Sum_probs=65.1
Q ss_pred eEEEEEEEEecCCCCcceEEEEEeeecCCCCCeEEEEEcCCCCCCceEEEeeeecCCCCCceeeEeecC-CCCCCcEEEE
Q 039255 67 FGKIDMQLKLVPRNSAGTVTAYYLRSQGPTWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLWF-DPTVNFHTYS 145 (267)
Q Consensus 67 YG~~eariKlp~g~s~G~v~Afwl~~~~~~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~~-d~~~dfHtY~ 145 (267)
...+++++|.... .|+. |++-.. ...+-+-+|.... .++..+.. + .....+.... -....||...
T Consensus 21 ~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~g------~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v~ 86 (151)
T cd00110 21 RLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELEDG------RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSVS 86 (151)
T ss_pred eeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEECC------EEEEEEcC-C--cccEEEEccCccCCCCEEEEE
Confidence 4457777776554 4654 222221 2355566676532 23332222 2 1222233221 2345799999
Q ss_pred EEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEEe
Q 039255 146 VLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKAD 219 (267)
Q Consensus 146 i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v~ 219 (267)
+.+....++.+|||..+.+...... . ..+.....+..||.-....+ +......+|.=-+++|+++
T Consensus 87 i~~~~~~~~l~VD~~~~~~~~~~~~---~----~~~~~~~~~~iGg~~~~~~~--~~~~~~~~F~Gci~~v~in 151 (151)
T cd00110 87 VERNGRSVTLSVDGERVVESGSPGG---S----ALLNLDGPLYLGGLPEDLKS--PGLPVSPGFVGCIRDLKVN 151 (151)
T ss_pred EEECCCEEEEEECCccEEeeeCCCC---c----eeecCCCCeEEcCCCCchhc--ccccccCCCceEeeEeEeC
Confidence 9999999999999985433322110 0 01112222444543211011 0122456788888888763
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=75.51 E-value=47 Score=28.57 Aligned_cols=71 Identities=11% Similarity=0.293 Sum_probs=43.1
Q ss_pred CCCCCcEEEEE--EEcC---CceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeE
Q 039255 136 DPTVNFHTYSV--LWNP---QRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFT 210 (267)
Q Consensus 136 d~~~dfHtY~i--~Wtp---~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~ 210 (267)
.....||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.+ |....+. .+-.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~-------~~~~ 216 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE-------SDTQ 216 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC---------SS-
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc-------cccE
Confidence 34578998877 5765 5799999999998877632 133236778888887543 2211111 1111
Q ss_pred EEEeEEEE
Q 039255 211 ASYRNFKA 218 (267)
Q Consensus 211 ~~~~~~~v 218 (267)
.+||+|++
T Consensus 217 vy~D~v~~ 224 (224)
T PF14099_consen 217 VYYDNVRI 224 (224)
T ss_dssp EEEEEEE-
T ss_pred EEeccccC
Confidence 88999875
No 28
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=73.39 E-value=30 Score=29.78 Aligned_cols=86 Identities=21% Similarity=0.296 Sum_probs=48.0
Q ss_pred CCCCcEEEEEEEcC--CceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEe
Q 039255 137 PTVNFHTYSVLWNP--QRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYR 214 (267)
Q Consensus 137 ~~~dfHtY~i~Wtp--~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~ 214 (267)
....||.+.+-|+. ..+.+|+||+....-. -..+...|. -..++|.-- . + .-||.. | ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~--gG~~vlGQe-Q-d--~~gG~f--d-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG--GGTLVLGQE-Q-D--SYGGGF--D-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S--SEEEEESS--B-S--BTTBTC--S-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC--CCEEEECcc-c-c--ccCCCc--C-CccEeeEEEe
Confidence 35789999999965 6799999999543221 122334442 233444431 1 1 124532 3 3458999999
Q ss_pred EEEEecCCchhccCCCHHHHHHHHH
Q 039255 215 NFKADGSRAWLLQQMDSTNQRRLYW 239 (267)
Q Consensus 215 ~~~v~~~~~~~~~~l~~~~~~~~~~ 239 (267)
+|++ |+.-|++.++++|..
T Consensus 151 ~~~i------Wd~vLs~~eI~~l~~ 169 (195)
T PF00354_consen 151 DFNI------WDRVLSPEEIRALAS 169 (195)
T ss_dssp EEEE------ESS---HHHHHHHHH
T ss_pred ceEE------EeeeCCHHHHHHHHh
Confidence 9986 677899999998865
No 29
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=61.98 E-value=35 Score=30.20 Aligned_cols=60 Identities=27% Similarity=0.452 Sum_probs=37.7
Q ss_pred CCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEEEeEEEE
Q 039255 139 VNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTASYRNFKA 218 (267)
Q Consensus 139 ~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~~~~~~v 218 (267)
..|+.-.+.=....|.|.|||.+|...+.... ...|. | .+|++-.- .=+|..|.|++++|
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPv---------l--------~~G~IGfR-qMapl~A~Yrnl~V 218 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPV---------L--------RGGRIGFR-QMAPLVARYRNLEV 218 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEEEEE-EETT-EEEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCc---------c--------cCcEeeee-ccchhhhhhccccC
Confidence 36676788889999999999999999875431 11243 0 14554211 24799999999986
No 30
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=54.99 E-value=1.4e+02 Score=25.86 Aligned_cols=142 Identities=16% Similarity=0.235 Sum_probs=70.2
Q ss_pred eEeEEEEEEEEecCCCCcceEEEEEeeecCC----------CCCeEEEEEcCCCCCCceEEEeeeecCCCCCceeeEeec
Q 039255 65 YLFGKIDMQLKLVPRNSAGTVTAYYLRSQGP----------TWDEIDFEFLGNLSGQPYTVHTNVYSQGKGDREQQFHLW 134 (267)
Q Consensus 65 ~~YG~~eariKlp~g~s~G~v~Afwl~~~~~----------~~~EIDiE~lG~~~g~p~~~~tn~~~~g~g~~~~~~~l~ 134 (267)
..-|.+.+|.|.... + -.-|++-.++.. ..+++=+|+.+......+...+.+...+. .+
T Consensus 32 L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~--------~~ 100 (190)
T PF02973_consen 32 LEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG--------YK 100 (190)
T ss_dssp -SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------ET
T ss_pred ccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------cc
Confidence 445677777776432 3 344555555410 12277778887654332322222111100 01
Q ss_pred CCCCCCcEEEEEEEc--CCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCCCCCeEEE
Q 039255 135 FDPTVNFHTYSVLWN--PQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWSQAPFTAS 212 (267)
Q Consensus 135 ~d~~~dfHtY~i~Wt--p~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~~~Pf~~~ 212 (267)
....||+-++.=+ ..+.++|+||+.+.++.... ..|-.+-|--= ++-.|+. .++|. ...||.-.
T Consensus 101 --~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n--~~~iG~t--~R~g~-----~~y~f~G~ 166 (190)
T PF02973_consen 101 --NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLN--SVQIGGT--NRAGS-----NAYPFNGT 166 (190)
T ss_dssp --TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT----EEEESSE--EETTE-----EES--EEE
T ss_pred --CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCc--eEEEcce--EeCCC-----ceecccce
Confidence 1346888888876 56799999998888775442 23322211111 1112321 12332 24599999
Q ss_pred EeEEEEecCCchhccCCCHHHHHHH
Q 039255 213 YRNFKADGSRAWLLQQMDSTNQRRL 237 (267)
Q Consensus 213 ~~~~~v~~~~~~~~~~l~~~~~~~~ 237 (267)
+++++|.. ..|+++++.+.
T Consensus 167 I~~l~iYn------~aLsdeel~~~ 185 (190)
T PF02973_consen 167 IDNLKIYN------RALSDEELKAR 185 (190)
T ss_dssp EEEEEEES------S---HHHHHHH
T ss_pred EEEEEEEc------CcCCHHHHHHh
Confidence 99999854 34787777654
No 31
>smart00282 LamG Laminin G domain.
Probab=51.77 E-value=76 Score=24.63 Aligned_cols=73 Identities=21% Similarity=0.175 Sum_probs=41.3
Q ss_pred CCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCcc-ccCCCCCCeEEEEeEE
Q 039255 138 TVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLI-KTDWSQAPFTASYRNF 216 (267)
Q Consensus 138 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~-~~d~~~~Pf~~~~~~~ 216 (267)
...||.-.+.-....+..+|||.......... .. ..+.+--.+..||--. +.. +.--...+|.=-++++
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~~~~~~------~~-~~l~~~~~l~iGG~p~---~~~~~~~~~~~~F~GCi~~v 130 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVSGESPG------GL-TILNLDGPLYLGGLPE---DLKLPPLLVTPGFRGCIRNL 130 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCccccEECCC------Cc-eEEecCCCcEEccCCc---hhcccccccCCCCeeEeeEE
Confidence 45799999999999999999997544332110 00 1112223345554322 100 0011345787778888
Q ss_pred EEec
Q 039255 217 KADG 220 (267)
Q Consensus 217 ~v~~ 220 (267)
++++
T Consensus 131 ~in~ 134 (135)
T smart00282 131 KVNG 134 (135)
T ss_pred EECC
Confidence 7753
No 32
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=49.39 E-value=1.1e+02 Score=22.89 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=47.2
Q ss_pred CCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCccccCCC-CCCeEEEEeEE
Q 039255 138 TVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLIKTDWS-QAPFTASYRNF 216 (267)
Q Consensus 138 ~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~~~d~~-~~Pf~~~~~~~ 216 (267)
...||.-.+.=....++..||+........... .. .-+...-.++.||.-...... .-. ...|.--++++
T Consensus 53 dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~~~~----~~--~~~~~~~~l~iGg~~~~~~~~---~~~~~~~f~Gci~~l 123 (128)
T PF02210_consen 53 DGQWHKVSISRDGNRVTLTVDGQSVSSESLPSS----SS--DSLDPDGSLYIGGLPESNQPS---GSVDTPGFVGCIRDL 123 (128)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEESSST----TH--HCBESEEEEEESSTTTTCTCT---TSSTTSB-EEEEEEE
T ss_pred ccceeEEEEEEeeeeEEEEecCccceEEecccc----ce--ecccCCCCEEEecccCccccc---cccCCCCcEEEcCeE
Confidence 567999999999999999999998877653321 00 023344457777654311111 111 56788889999
Q ss_pred EEec
Q 039255 217 KADG 220 (267)
Q Consensus 217 ~v~~ 220 (267)
+|++
T Consensus 124 ~vng 127 (128)
T PF02210_consen 124 RVNG 127 (128)
T ss_dssp EETT
T ss_pred EECC
Confidence 8864
No 33
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=46.35 E-value=24 Score=36.25 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=41.3
Q ss_pred CCCCcEEEEEEEcCCceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeeeeCCCccCCCCcc
Q 039255 137 PTVNFHTYSVLWNPQRIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLWNADDWATRGGLI 200 (267)
Q Consensus 137 ~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~GG~~ 200 (267)
..++||.|.+.-.--.++.||||+-..-..- -..||- .|.++-..|-+|--|. |+..
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~~tqLvVGACW~--g~~~ 496 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKIETQLVVGACWQ--GRQQ 496 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-CcccccceeEEeeecc--Cccc
Confidence 3578999999997555999999985432111 135887 7888888888888887 5543
No 34
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=31.05 E-value=1.1e+02 Score=22.05 Aligned_cols=44 Identities=9% Similarity=0.058 Sum_probs=29.0
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCceEEEceeeEeEEEEEEEEecCC
Q 039255 33 WGDGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLVPR 79 (267)
Q Consensus 33 w~~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g 79 (267)
+.++++++.-+++.|.++..+..... ...+.+|.|+=+++||..
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~ 61 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEG 61 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCC
Confidence 34566766556666888875432211 344678999999999865
No 35
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=31.00 E-value=90 Score=23.40 Aligned_cols=45 Identities=16% Similarity=0.191 Sum_probs=27.2
Q ss_pred CCCeEEecCCcEEEEEEecCCCceEEEceeeEeEEEEEEEEecCC
Q 039255 35 DGHGKIFNNGQLLTLTLDRYSGSGFQSKKQYLFGKIDMQLKLVPR 79 (267)
Q Consensus 35 ~~nv~~~~~G~~l~L~l~~~sG~~i~Sk~~~~YG~~eariKlp~g 79 (267)
++.|.+.-.++.|.++..+..-..-.....+.||.|+=++.||.+
T Consensus 21 kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~ 65 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPG 65 (87)
T ss_pred HHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCC
Confidence 455665545555888775432111011235689999999999964
No 36
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=29.98 E-value=1e+02 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.459 Sum_probs=27.9
Q ss_pred eeeEeecCCCCCCcEEEEEEEcCCceEEEECCeeEEEE
Q 039255 128 EQQFHLWFDPTVNFHTYSVLWNPQRIVFSVDGIPIREF 165 (267)
Q Consensus 128 ~~~~~l~~d~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~ 165 (267)
..++++|.- +.|=|.|+|--..+.+..+++|..+++-
T Consensus 92 ~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~Ta 128 (187)
T KOG4352|consen 92 TKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRTA 128 (187)
T ss_pred hhheeEEEE-ecCCceEEEEEeccceeeEEcCcccccc
Confidence 345666642 2334999999999999999999888763
No 37
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=29.91 E-value=89 Score=23.15 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=29.9
Q ss_pred cCCCeEEecCCcEEEEEEecCCCc----eEEEceeeEeEEEEEEEEecCC
Q 039255 34 GDGHGKIFNNGQLLTLTLDRYSGS----GFQSKKQYLFGKIDMQLKLVPR 79 (267)
Q Consensus 34 ~~~nv~~~~~G~~l~L~l~~~sG~----~i~Sk~~~~YG~~eariKlp~g 79 (267)
.++++.+.-+|+.|.++..+.... .+. .+.+.+|.|+-++.||..
T Consensus 23 ~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~-~~e~~~g~f~R~~~LP~~ 71 (90)
T cd06470 23 SEDDLEIEVENNQLTVTGKKADEENEEREYL-HRGIAKRAFERSFNLADH 71 (90)
T ss_pred CHHHeEEEEECCEEEEEEEEcccccCCCcEE-EEEEeceEEEEEEECCCC
Confidence 456677766677788876543322 122 235779999999999974
No 38
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=28.74 E-value=3.1e+02 Score=22.40 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=17.7
Q ss_pred cCCCeEEecCCcEEEEEEecCCCce
Q 039255 34 GDGHGKIFNNGQLLTLTLDRYSGSG 58 (267)
Q Consensus 34 ~~~nv~~~~~G~~l~L~l~~~sG~~ 58 (267)
..+++.+...|..+.+.-|...|++
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc
Confidence 3567888777876666557778876
No 39
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=26.44 E-value=80 Score=23.20 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=21.8
Q ss_pred ceEEEECCeeEEEEeecccCCcCCCCCCccEEEEeee
Q 039255 152 RIVFSVDGIPIREFKNLEAIGVPFPKNLPMRVYSSLW 188 (267)
Q Consensus 152 ~I~fyVDG~~v~~~~~~~~~g~~~P~~~Pm~l~lnlw 188 (267)
.+.|||||+++.+..... ...|+-..|..-.|.+-
T Consensus 44 ~~~W~vdg~~~g~~~~~~--~~~~~~~~~G~h~l~vv 78 (89)
T PF06832_consen 44 PVYWFVDGEPLGTTQPGH--QLFWQPDRPGEHTLTVV 78 (89)
T ss_pred cEEEEECCEEcccCCCCC--eEEeCCCCCeeEEEEEE
Confidence 899999999996544332 12343335666666663
No 40
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=23.81 E-value=1.2e+02 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=23.7
Q ss_pred CCCCcEEEEEEEcCCceEEEECCeeEEEEe
Q 039255 137 PTVNFHTYSVLWNPQRIVFSVDGIPIREFK 166 (267)
Q Consensus 137 ~~~dfHtY~i~Wtp~~I~fyVDG~~v~~~~ 166 (267)
+.++-|++.+. .-+..+++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46678888888 788899999999996554
No 41
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.22 E-value=1.8e+02 Score=20.38 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.2
Q ss_pred cCCCeEEecCCcEEEEEEecCCCce---EEEceeeEeEEEEEEEEecCC
Q 039255 34 GDGHGKIFNNGQLLTLTLDRYSGSG---FQSKKQYLFGKIDMQLKLVPR 79 (267)
Q Consensus 34 ~~~nv~~~~~G~~l~L~l~~~sG~~---i~Sk~~~~YG~~eariKlp~g 79 (267)
.++++.+.-+++.|.++..+..... -.......+|.|+-++++|..
T Consensus 19 ~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~ 67 (88)
T cd06464 19 KKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPED 67 (88)
T ss_pred CHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCC
Confidence 3456666556666777764432211 223456678999999999975
Done!