Query 039256
Match_columns 91
No_of_seqs 107 out of 263
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01958 HPS_like HPS_like: Hyd 100.0 1.5E-41 3.2E-46 226.7 3.0 84 6-90 1-85 (85)
2 PF14547 Hydrophob_seed: Hydro 100.0 6.9E-41 1.5E-45 223.0 3.7 84 8-91 1-85 (85)
3 smart00499 AAI Plant lipid tra 97.2 0.00024 5.3E-09 42.6 1.8 75 9-90 1-79 (79)
4 cd04660 nsLTP_like nsLTP_like: 96.8 0.00081 1.8E-08 42.4 2.1 69 12-90 4-73 (73)
5 PF14368 LTP_2: Probable lipid 96.6 0.00019 4.1E-09 45.7 -1.9 55 32-90 41-96 (96)
6 cd01959 nsLTP2 nsLTP2: Non-spe 96.5 0.00088 1.9E-08 42.4 0.6 62 13-86 3-65 (66)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 90.7 0.041 8.9E-07 32.9 -1.1 49 32-81 14-62 (63)
8 PF00234 Tryp_alpha_amyl: Prot 90.4 0.011 2.4E-07 37.5 -4.0 68 14-90 13-90 (90)
9 cd01960 nsLTP1 nsLTP1: Non-spe 79.2 0.86 1.9E-05 29.2 0.7 68 13-85 7-79 (89)
10 PF02084 Bindin: Bindin; Inte 45.8 7.7 0.00017 30.6 0.3 24 55-79 107-136 (238)
No 1
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=1.5e-41 Score=226.69 Aligned_cols=84 Identities=42% Similarity=0.804 Sum_probs=81.8
Q ss_pred CCCCCccccchhhhHHHhhhhhccCC-CCCCCCCccccCccCCCcceeehhhhcccccceecccccchHHHHHHhcCCCC
Q 039256 6 PGNCPPDALKLKLCADVLGAIVLKLP-APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKLDVPIDLSLLLNHCDVSS 84 (91)
Q Consensus 6 ~~~CP~d~lkL~vCa~vLgl~~~~~g-p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l~~pv~l~llln~Cgk~~ 84 (91)
.++||+|++|||+|+||||++++.+| ++.++|||+|+||+|+|||+|||||||+|+||| ++|+|+++++++|+|||++
T Consensus 1 ~~~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi-~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 1 GPTCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGI-SINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCc-ccccChhHHHHHHHHcCcC
Confidence 36899999999999999999999999 999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCccc
Q 039256 85 TNEFKC 90 (91)
Q Consensus 85 P~gF~C 90 (91)
|+||+|
T Consensus 80 P~gf~C 85 (85)
T cd01958 80 PPGFTC 85 (85)
T ss_pred CCCCcC
Confidence 999998
No 2
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=6.9e-41 Score=223.02 Aligned_cols=84 Identities=44% Similarity=0.865 Sum_probs=81.9
Q ss_pred CCCccccchhhhHHHhhhhhccCC-CCCCCCCccccCccCCCcceeehhhhcccccceecccccchHHHHHHhcCCCCCC
Q 039256 8 NCPPDALKLKLCADVLGAIVLKLP-APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKLDVPIDLSLLLNHCDVSSTN 86 (91)
Q Consensus 8 ~CP~d~lkL~vCa~vLgl~~~~~g-p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l~~pv~l~llln~Cgk~~P~ 86 (91)
+||+|++||++|+||||++++.+| |++++|||+|+||+|+|||+|||||+|+|++|++++++|+++++++|.|||++|+
T Consensus 1 ~CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 1 TCPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred CCCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcC
Confidence 799999999999999999999999 8999999999999999999999999999999955999999999999999999999
Q ss_pred CcccC
Q 039256 87 EFKCA 91 (91)
Q Consensus 87 gF~C~ 91 (91)
||+|+
T Consensus 81 gf~C~ 85 (85)
T PF14547_consen 81 GFTCP 85 (85)
T ss_pred CCcCC
Confidence 99996
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=97.16 E-value=0.00024 Score=42.58 Aligned_cols=75 Identities=23% Similarity=0.366 Sum_probs=52.0
Q ss_pred CCccccchhhhHHHhhhhhccCC-CCCCCCCccccCccCCCcceeehhhhcccccceecc---cccchHHHHHHhcCCCC
Q 039256 9 CPPDALKLKLCADVLGAIVLKLP-APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKL---DVPIDLSLLLNHCDVSS 84 (91)
Q Consensus 9 CP~d~lkL~vCa~vLgl~~~~~g-p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l---~~pv~l~llln~Cgk~~ 84 (91)
|.....++..|.+.+.... .. ++.++||+-+..+. ...|+|.+++....++ .. ........|-+.||...
T Consensus 1 C~~~~~~~~~c~~~~~~~~--~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~-~~~~~~~~~~a~~lp~~C~~~~ 74 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGS--PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGI-LEIPGVNAQNAASLPSACGVPP 74 (79)
T ss_pred ChhhhhhHHhhHHHHcCCC--CCCCCchHHHHHHHHhc---ccCCcchhhhcccccc-cchhhhhHHHHHhhHHhcCCCC
Confidence 4445556667777762211 12 56788999999997 6779999999987765 21 12355667888999998
Q ss_pred CCCccc
Q 039256 85 TNEFKC 90 (91)
Q Consensus 85 P~gF~C 90 (91)
|. +.|
T Consensus 75 ~~-~~C 79 (79)
T smart00499 75 PY-TDC 79 (79)
T ss_pred CC-CCC
Confidence 76 554
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.83 E-value=0.00081 Score=42.44 Aligned_cols=69 Identities=22% Similarity=0.374 Sum_probs=47.6
Q ss_pred cccchhhhHHHhhhhhccCC-CCCCCCCccccCccCCCcceeehhhhcccccceecccccchHHHHHHhcCCCCCCCccc
Q 039256 12 DALKLKLCADVLGAIVLKLP-APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKLDVPIDLSLLLNHCDVSSTNEFKC 90 (91)
Q Consensus 12 d~lkL~vCa~vLgl~~~~~g-p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l~~pv~l~llln~Cgk~~P~gF~C 90 (91)
|..+|..|...+. +-.-. +|.+.||+-|+.+ |. .|+|..++...+.+ +|.. ....|-..||..+|+ |+|
T Consensus 4 ~~~~L~~C~~yl~--~~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~--i~~~-~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 4 DLDLLAECQPYVT--GPNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI--IDPD-KAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred CHHHHHHHHHHHc--CCCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc--cCHH-HHHHHHHHcCCCCCC-CCC
Confidence 3456778888761 00111 3667799999974 32 39999999876654 3443 355788999999999 987
No 5
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.62 E-value=0.00019 Score=45.75 Aligned_cols=55 Identities=27% Similarity=0.439 Sum_probs=34.1
Q ss_pred CCCCCCCccccCccCCCcceeehhhhcccc-cceecccccchHHHHHHhcCCCCCCCccc
Q 039256 32 APQHECRSPIGNLVGLNAVACLSTSLHVNV-LNLIKLDVPIDLSLLLNHCDVSSTNEFKC 90 (91)
Q Consensus 32 p~~~~CC~li~gL~dldAavCLCtaikanv-lgiv~l~~pv~l~llln~Cgk~~P~gF~C 90 (91)
.|..+||.-++.+.+. ...|||..++... .++ .+|..-.+ .|...||...|. ++|
T Consensus 41 ~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~-~in~~~a~-~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 41 APSAACCSALKSVVQA-DPPCLCQLLNSPGAPGF-GINVTRAL-ALPAACGVPVPP-SKC 96 (96)
T ss_dssp ---HHHHHHHCC-----HCCHHHCCCC-CCHCHH-CCTCHHHH-HHHHHCTSS-S-----
T ss_pred CCCHHHHHHHHHhccC-CCCCHHHhcCccccccC-CcCHHHHH-HHHHHcCCCCCC-CCC
Confidence 7888999999999774 4899999999987 454 56655444 577899999998 887
No 6
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=96.52 E-value=0.00088 Score=42.44 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=46.2
Q ss_pred ccchhhhHHHhhhhhccCC-CCCCCCCccccCccCCCcceeehhhhcccccceecccccchHHHHHHhcCCCCCC
Q 039256 13 ALKLKLCADVLGAIVLKLP-APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKLDVPIDLSLLLNHCDVSSTN 86 (91)
Q Consensus 13 ~lkL~vCa~vLgl~~~~~g-p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l~~pv~l~llln~Cgk~~P~ 86 (91)
..+|..|...+ ..| +|+.+||.-|.. +--|||.-+|...++. -+|.|-+. -|.+.||..+|.
T Consensus 3 ~~~L~~C~~ai-----~~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~-~i~~~~A~-~l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAI-----LGGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQ-YVNSPNAR-KVLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHH-----hCCCCCCHHHHHHHhc-----CCCCeeeeecCccHHh-hcCcHHHH-HHHHHcCCCCCC
Confidence 34678888874 235 888999999987 2379999999877774 45666655 477899999874
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=90.65 E-value=0.041 Score=32.92 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCCCCCCccccCccCCCcceeehhhhcccccceecccccchHHHHHHhcC
Q 039256 32 APQHECRSPIGNLVGLNAVACLSTSLHVNVLNLIKLDVPIDLSLLLNHCD 81 (91)
Q Consensus 32 p~~~~CC~li~gL~dldAavCLCtaikanvlgiv~l~~pv~l~llln~Cg 81 (91)
.|..+||+-++.+.+.| ..|||..+|........++-.-....|-+.||
T Consensus 14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cg 62 (63)
T cd00010 14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNATRALALPAACG 62 (63)
T ss_pred CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccHHHHHhchHhcC
Confidence 57788999999998764 45999999986644211111233445666676
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=90.40 E-value=0.011 Score=37.46 Aligned_cols=68 Identities=21% Similarity=0.403 Sum_probs=47.7
Q ss_pred cchhhhHHHhhhhhccCCCCCCCCCccccCccCCCcceeehhhhccccccee----------cccccchHHHHHHhcCCC
Q 039256 14 LKLKLCADVLGAIVLKLPAPQHECRSPIGNLVGLNAVACLSTSLHVNVLNLI----------KLDVPIDLSLLLNHCDVS 83 (91)
Q Consensus 14 lkL~vCa~vLgl~~~~~gp~~~~CC~li~gL~dldAavCLCtaikanvlgiv----------~l~~pv~l~llln~Cgk~ 83 (91)
..+..|...+.- .-+.+.+.||.-|+.+ -..|.|.+||..+.+++ .++. -....|-+.||..
T Consensus 13 ~~l~~c~~~~~~---~~~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~-~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 13 VRLSPCLPYLQG---GCQQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMA-QRAQNLPSMCNVS 84 (90)
T ss_dssp SHHHGGHHHHTT---SSSHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHH-HHHHHHHHHTTSS
T ss_pred ccccccHHHHhc---ccccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHH-HHHHHHHHHCCCC
Confidence 457777777521 1113567899999999 78999999999887731 2333 4466788899999
Q ss_pred CCCCccc
Q 039256 84 STNEFKC 90 (91)
Q Consensus 84 ~P~gF~C 90 (91)
+|. |.|
T Consensus 85 ~~~-~~C 90 (90)
T PF00234_consen 85 PPY-TDC 90 (90)
T ss_dssp SSS-S-G
T ss_pred CCC-CCC
Confidence 887 665
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=79.24 E-value=0.86 Score=29.21 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=40.8
Q ss_pred ccchhhhHHHhhhhhccCCCCCCCCCccccCccCCC----cceeehhhhcccccceec-ccccchHHHHHHhcCCCCC
Q 039256 13 ALKLKLCADVLGAIVLKLPAPQHECRSPIGNLVGLN----AVACLSTSLHVNVLNLIK-LDVPIDLSLLLNHCDVSST 85 (91)
Q Consensus 13 ~lkL~vCa~vLgl~~~~~gp~~~~CC~li~gL~dld----AavCLCtaikanvlgiv~-l~~pv~l~llln~Cgk~~P 85 (91)
..+|.-|.+.+.- .-..|..+||.-++.|.+.- .-.|+|.-+|....++ . +|... +..|=..||-..|
T Consensus 7 ~~~l~~C~~y~~g---~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~-~~i~~~~-a~~LP~~C~v~~~ 79 (89)
T cd01960 7 TSLLAPCLGYLTG---GGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGI-SGLNPGR-AAGLPGKCGVSIP 79 (89)
T ss_pred HhhHHhHHHHHhC---CCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccccc-CCCCHHH-HHhChHhcccCCC
Confidence 4467778887621 00257788999999986541 2245666666665554 3 33323 3346668988754
No 10
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=45.76 E-value=7.7 Score=30.55 Aligned_cols=24 Identities=42% Similarity=0.823 Sum_probs=14.3
Q ss_pred hhhcccccceecccccchH------HHHHHh
Q 039256 55 TSLHVNVLNLIKLDVPIDL------SLLLNH 79 (91)
Q Consensus 55 taikanvlgiv~l~~pv~l------~llln~ 79 (91)
..||| |||--+||+|||| .|||++
T Consensus 107 ~~ika-vLgaTKiDLPVDINDPYDlGLLLRh 136 (238)
T PF02084_consen 107 EDIKA-VLGATKIDLPVDINDPYDLGLLLRH 136 (238)
T ss_pred HHHHH-HhcccccccccccCChhhHHHHHHH
Confidence 45666 4674366666654 577754
Done!