Query 039257
Match_columns 210
No_of_seqs 161 out of 1795
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039257.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039257hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 2.9E-25 6.3E-30 193.4 11.2 193 1-195 454-653 (889)
2 KOG0617 Ras suppressor protein 99.7 3.8E-19 8.3E-24 124.7 -4.6 146 51-202 40-190 (264)
3 PLN03210 Resistant to P. syrin 99.7 1.2E-15 2.6E-20 138.7 15.8 190 6-201 471-721 (1153)
4 KOG0617 Ras suppressor protein 99.6 2.9E-17 6.3E-22 115.3 -2.5 137 57-198 24-164 (264)
5 PLN00113 leucine-rich repeat r 99.5 1.9E-13 4.1E-18 123.1 12.1 132 66-201 118-253 (968)
6 PLN00113 leucine-rich repeat r 99.5 2.1E-13 4.6E-18 122.8 11.4 148 50-201 124-277 (968)
7 PF14580 LRR_9: Leucine-rich r 99.4 2.2E-13 4.7E-18 98.0 3.7 128 59-191 12-147 (175)
8 KOG4194 Membrane glycoprotein 99.4 6.3E-14 1.4E-18 114.8 -0.1 153 50-206 179-338 (873)
9 KOG4194 Membrane glycoprotein 99.4 3.5E-13 7.6E-18 110.5 3.6 145 50-197 155-306 (873)
10 KOG0472 Leucine-rich repeat pr 99.3 8E-14 1.7E-18 109.6 -1.4 108 85-197 432-541 (565)
11 KOG0444 Cytoskeletal regulator 99.3 7.2E-14 1.6E-18 115.6 -2.3 143 49-196 37-185 (1255)
12 PF14580 LRR_9: Leucine-rich r 99.3 2.8E-12 6.1E-17 92.3 6.1 121 46-168 21-149 (175)
13 KOG0444 Cytoskeletal regulator 99.3 2.7E-13 5.8E-18 112.3 0.3 132 61-196 98-257 (1255)
14 PLN03210 Resistant to P. syrin 99.2 9E-11 2E-15 107.3 12.7 142 48-196 593-737 (1153)
15 KOG4237 Extracellular matrix p 99.2 5.9E-13 1.3E-17 104.5 -1.8 75 132-208 270-345 (498)
16 KOG0472 Leucine-rich repeat pr 99.2 4E-13 8.7E-18 105.8 -3.3 125 65-196 182-309 (565)
17 KOG1259 Nischarin, modulator o 99.2 1.1E-12 2.4E-17 100.0 -1.1 132 62-199 280-414 (490)
18 PRK15370 E3 ubiquitin-protein 99.2 1.3E-10 2.8E-15 101.0 10.7 119 47-177 181-300 (754)
19 KOG0618 Serine/threonine phosp 99.2 2.1E-12 4.5E-17 110.6 -1.3 137 66-207 359-498 (1081)
20 PRK15387 E3 ubiquitin-protein 99.1 1.3E-09 2.8E-14 94.7 12.7 88 33-129 190-278 (788)
21 PRK15387 E3 ubiquitin-protein 99.1 2.1E-10 4.6E-15 99.5 7.7 81 113-202 382-463 (788)
22 KOG0618 Serine/threonine phosp 99.1 7.7E-12 1.7E-16 107.2 -1.2 144 50-200 293-468 (1081)
23 KOG4237 Extracellular matrix p 99.1 2.4E-11 5.1E-16 95.6 -0.2 148 45-196 47-200 (498)
24 PRK15370 E3 ubiquitin-protein 99.0 6.5E-10 1.4E-14 96.7 8.3 140 49-202 225-384 (754)
25 KOG0532 Leucine-rich repeat (L 99.0 2.3E-11 5E-16 99.6 -1.5 132 62-199 117-249 (722)
26 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.3E-14 64.6 4.3 57 89-147 2-60 (61)
27 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.2E-14 65.4 3.3 58 137-195 2-60 (61)
28 PLN03150 hypothetical protein; 98.9 6.4E-09 1.4E-13 89.5 9.4 107 90-200 420-531 (623)
29 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 88.5 4.0 146 49-200 121-293 (394)
30 KOG1259 Nischarin, modulator o 98.8 4E-10 8.6E-15 86.3 -0.5 120 53-177 293-416 (490)
31 PLN03150 hypothetical protein; 98.8 8.6E-09 1.9E-13 88.8 6.9 87 115-203 420-509 (623)
32 COG4886 Leucine-rich repeat (L 98.8 3.4E-09 7.3E-14 86.6 3.7 109 58-169 108-219 (394)
33 KOG4658 Apoptotic ATPase [Sign 98.7 2.6E-08 5.6E-13 88.3 5.4 120 48-169 527-652 (889)
34 KOG0532 Leucine-rich repeat (L 98.6 9.2E-09 2E-13 84.7 0.5 127 47-178 124-252 (722)
35 KOG1859 Leucine-rich repeat pr 98.6 3.1E-09 6.7E-14 89.8 -3.1 142 49-198 92-268 (1096)
36 cd00116 LRR_RI Leucine-rich re 98.5 7E-08 1.5E-12 76.4 3.9 59 110-169 162-231 (319)
37 cd00116 LRR_RI Leucine-rich re 98.5 9.6E-08 2.1E-12 75.6 4.1 128 66-198 137-292 (319)
38 PF12799 LRR_4: Leucine Rich r 98.5 2.2E-07 4.7E-12 51.2 4.1 39 137-176 2-40 (44)
39 KOG1644 U2-associated snRNP A' 98.5 3.1E-07 6.7E-12 66.6 5.4 120 70-194 23-150 (233)
40 KOG4579 Leucine-rich repeat (L 98.4 1.7E-08 3.6E-13 68.9 -2.8 108 68-178 29-141 (177)
41 PF12799 LRR_4: Leucine Rich r 98.3 5.9E-07 1.3E-11 49.5 3.3 39 113-152 1-40 (44)
42 KOG1859 Leucine-rich repeat pr 98.3 4.9E-09 1.1E-13 88.6 -7.6 129 62-197 160-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.3 1.2E-07 2.6E-12 78.1 0.1 108 62-175 91-201 (414)
44 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.7E-12 75.8 0.1 61 135-196 245-313 (505)
45 KOG0531 Protein phosphatase 1, 98.2 1.7E-07 3.7E-12 77.2 -1.3 144 48-197 99-268 (414)
46 PRK15386 type III secretion pr 98.2 1.1E-05 2.4E-10 65.5 8.6 57 66-127 52-108 (426)
47 KOG3207 Beta-tubulin folding c 98.2 8.3E-07 1.8E-11 71.3 1.9 84 112-197 245-339 (505)
48 KOG3665 ZYG-1-like serine/thre 98.2 1.6E-06 3.5E-11 75.3 3.7 128 66-197 122-263 (699)
49 KOG1644 U2-associated snRNP A' 98.2 6.1E-06 1.3E-10 60.0 6.0 100 67-168 43-149 (233)
50 KOG3665 ZYG-1-like serine/thre 97.9 5.1E-06 1.1E-10 72.2 2.6 109 87-198 121-234 (699)
51 KOG4579 Leucine-rich repeat (L 97.9 1.1E-06 2.4E-11 60.2 -2.0 86 67-155 54-142 (177)
52 PRK15386 type III secretion pr 97.5 0.00027 5.8E-09 57.6 5.6 98 85-196 49-168 (426)
53 KOG1909 Ran GTPase-activating 97.4 6.6E-05 1.4E-09 59.0 1.4 128 66-196 157-310 (382)
54 KOG1909 Ran GTPase-activating 97.4 6.1E-05 1.3E-09 59.2 1.1 128 66-196 92-253 (382)
55 KOG2120 SCF ubiquitin ligase, 97.4 7.8E-06 1.7E-10 63.0 -3.8 37 87-123 233-270 (419)
56 KOG2123 Uncharacterized conser 97.4 8.4E-06 1.8E-10 62.3 -3.7 99 87-190 18-123 (388)
57 KOG2739 Leucine-rich acidic nu 97.4 0.00013 2.8E-09 55.1 2.6 101 66-169 43-153 (260)
58 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.5E-09 55.4 1.5 100 87-191 42-150 (260)
59 PF13306 LRR_5: Leucine rich r 97.1 0.0038 8.2E-08 42.4 7.5 112 67-186 13-128 (129)
60 KOG2123 Uncharacterized conser 96.9 9.4E-05 2E-09 56.7 -2.3 94 48-142 23-123 (388)
61 KOG2120 SCF ubiquitin ligase, 96.9 0.00018 3.8E-09 55.8 -0.9 60 133-195 310-374 (419)
62 PF00560 LRR_1: Leucine Rich R 96.8 0.00054 1.2E-08 31.5 0.9 17 138-154 2-18 (22)
63 PF13306 LRR_5: Leucine rich r 96.5 0.012 2.5E-07 40.0 6.2 113 85-207 9-124 (129)
64 KOG2982 Uncharacterized conser 96.3 0.00099 2.1E-08 51.7 0.1 19 180-198 245-263 (418)
65 PF00560 LRR_1: Leucine Rich R 96.2 0.0032 6.9E-08 28.9 1.4 20 114-134 1-21 (22)
66 KOG2982 Uncharacterized conser 95.8 0.0044 9.6E-08 48.3 1.4 83 85-169 68-156 (418)
67 PF13504 LRR_7: Leucine rich r 95.8 0.0067 1.4E-07 25.9 1.4 14 138-151 3-16 (17)
68 COG5238 RNA1 Ran GTPase-activa 95.2 0.05 1.1E-06 42.1 5.3 133 62-197 88-255 (388)
69 KOG0473 Leucine-rich repeat pr 94.7 0.00069 1.5E-08 50.8 -5.7 80 87-169 41-121 (326)
70 smart00369 LRR_TYP Leucine-ric 94.0 0.057 1.2E-06 25.6 2.1 17 137-153 3-19 (26)
71 smart00370 LRR Leucine-rich re 94.0 0.057 1.2E-06 25.6 2.1 17 137-153 3-19 (26)
72 smart00370 LRR Leucine-rich re 93.8 0.062 1.3E-06 25.5 2.0 19 159-178 2-20 (26)
73 smart00369 LRR_TYP Leucine-ric 93.8 0.062 1.3E-06 25.5 2.0 19 159-178 2-20 (26)
74 KOG4341 F-box protein containi 92.2 0.13 2.9E-06 42.0 2.8 39 159-197 401-439 (483)
75 KOG3864 Uncharacterized conser 91.8 0.021 4.5E-07 42.0 -1.9 80 89-169 102-186 (221)
76 KOG3864 Uncharacterized conser 91.2 0.057 1.2E-06 39.8 -0.2 60 85-144 122-184 (221)
77 KOG0473 Leucine-rich repeat pr 91.2 0.003 6.4E-08 47.5 -6.9 86 61-149 37-124 (326)
78 KOG4341 F-box protein containi 90.3 0.17 3.7E-06 41.4 1.7 113 85-198 291-415 (483)
79 smart00364 LRR_BAC Leucine-ric 88.1 0.33 7.2E-06 23.1 1.2 17 137-153 3-19 (26)
80 COG5238 RNA1 Ran GTPase-activa 86.8 1 2.2E-05 35.2 3.7 129 65-196 29-197 (388)
81 KOG1947 Leucine rich repeat pr 83.4 0.77 1.7E-05 38.3 2.0 110 87-197 187-308 (482)
82 KOG1947 Leucine rich repeat pr 81.5 1.3 2.9E-05 36.9 2.7 88 85-172 211-308 (482)
83 smart00365 LRR_SD22 Leucine-ri 79.0 1.9 4.1E-05 20.5 1.7 13 137-149 3-15 (26)
84 smart00367 LRR_CC Leucine-rich 78.7 1.7 3.6E-05 20.4 1.5 11 159-169 2-12 (26)
85 PF13516 LRR_6: Leucine Rich r 77.2 1.5 3.2E-05 20.1 1.0 14 136-149 2-15 (24)
86 smart00368 LRR_RI Leucine rich 64.8 6 0.00013 18.9 1.6 13 137-149 3-15 (28)
87 PF14162 YozD: YozD-like prote 56.4 7.4 0.00016 21.7 1.2 18 1-18 12-29 (57)
88 KOG3763 mRNA export factor TAP 56.3 8.8 0.00019 32.9 2.1 61 111-173 216-284 (585)
89 PF07723 LRR_2: Leucine Rich R 45.2 16 0.00034 17.2 1.2 23 185-210 1-23 (26)
90 KOG3763 mRNA export factor TAP 37.5 21 0.00046 30.8 1.6 63 85-149 215-283 (585)
91 COG3432 Predicted transcriptio 34.3 1E+02 0.0022 19.9 4.0 34 2-35 47-83 (95)
92 PF14468 DUF4427: Protein of u 31.3 1.7E+02 0.0037 19.9 5.4 61 1-61 44-118 (132)
93 TIGR00864 PCC polycystin catio 24.9 55 0.0012 34.1 2.3 28 95-123 2-29 (2740)
94 PF14947 HTH_45: Winged helix- 22.1 1.9E+02 0.0042 17.4 4.3 35 2-37 35-69 (77)
95 smart00419 HTH_CRP helix_turn_ 21.6 1.3E+02 0.0029 15.6 2.7 23 3-26 25-47 (48)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-25 Score=193.38 Aligned_cols=193 Identities=40% Similarity=0.616 Sum_probs=173.8
Q ss_pred ChHhhHHHHHhHhccceecC----CCeeEehHHHHHHHHHHHhhhccccccEEEecCCCCccCCCccCCCCccEEEeecc
Q 039257 1 NRGYYIVGTLVHVCLLEEIE----DDKVKMLDVVRDMALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQN 76 (210)
Q Consensus 1 ~~~~~~~~~L~~~~l~~~~~----~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~ 76 (210)
|.|+.|+++||++||++.++ ...|+|||+++|+|.|+|++.+.++++++.-.+.+..+.|....+...+++.+.++
T Consensus 454 d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 454 DVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred cchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc
Confidence 57999999999999999965 48999999999999999999988888877777778888999999999999999999
Q ss_pred cccccCCCCCCCCccEEEcccCCC--CcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch
Q 039257 77 QIETLSEVPTCPHFVTLFLDFNGE--LKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE 153 (210)
Q Consensus 77 ~~~~l~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~ 153 (210)
.+..++.....++|++|.+. .+. +..++..+|..++.|++||+++|..+. +|+.++.+.+|+||+++++.++++|.
T Consensus 534 ~~~~~~~~~~~~~L~tLll~-~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQ-RNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred chhhccCCCCCCccceEEEe-ecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence 99988888778899999999 664 788898889999999999999987777 99999999999999999999999999
Q ss_pred hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 154 ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 154 ~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
+++++..|.+|++..+..+..+|. +...|++||+|.+....
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHHHHHhhheeccccccccccccc-hhhhcccccEEEeeccc
Confidence 999999999999999866666755 46679999999997665
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.69 E-value=3.8e-19 Score=124.71 Aligned_cols=146 Identities=29% Similarity=0.435 Sum_probs=107.8
Q ss_pred ecCCCCccC-CCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257 51 CAGAGLEEA-PDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK- 127 (210)
Q Consensus 51 ~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 127 (210)
++++.++.+ |.+..+.+++.|++.+|+++.+|.. +.+++|+.|++. .+.+..+|.+ |+.++.|++||+..| .+.
T Consensus 40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~~lprg-fgs~p~levldltyn-nl~e 116 (264)
T KOG0617|consen 40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLNILPRG-FGSFPALEVLDLTYN-NLNE 116 (264)
T ss_pred cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhhcCccc-cCCCchhhhhhcccc-cccc
Confidence 344444444 3455666677777777777776665 667777777776 6667777766 677777777777766 555
Q ss_pred --ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257 128 --FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV 202 (210)
Q Consensus 128 --l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 202 (210)
+|..|..+..|+.|.++.|.+.-+|..++++++|+.|.++.| .+-++|.+ ++.++.|+.|++.+|++. .+|+
T Consensus 117 ~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-dll~lpke-ig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-DLLSLPKE-IGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-chhhCcHH-HHHHHHHHHHhcccceee-ecCh
Confidence 566666666677777777777777888999999999999999 88899988 999999999999999884 4444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=1.2e-15 Score=138.67 Aligned_cols=190 Identities=23% Similarity=0.278 Sum_probs=129.2
Q ss_pred HHHHHhHhccceecCCCeeEehHHHHHHHHHHHhhhccc--cccEEEec----------------------CCCCcc--C
Q 039257 6 IVGTLVHVCLLEEIEDDKVKMLDVVRDMALWIACETEKE--KINFLVCA----------------------GAGLEE--A 59 (210)
Q Consensus 6 ~~~~L~~~~l~~~~~~~~~~~hd~~~~~~~~~~~~~~~~--~~~~~~~~----------------------~~~~~~--~ 59 (210)
-++.|++++|++... .++.|||++++||+.+++....+ ++.+++.. -..+.. +
T Consensus 471 ~l~~L~~ksLi~~~~-~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i 549 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE-DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHI 549 (1153)
T ss_pred ChHHHHhcCCEEEcC-CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeee
Confidence 378999999999854 67999999999999998765311 11111100 000000 0
Q ss_pred --CCccCC-------------------------------CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccch
Q 039257 60 --PDVKEW-------------------------------ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIAD 106 (210)
Q Consensus 60 --~~~~~~-------------------------------~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~ 106 (210)
..+..+ .+++.|.+.++.++.+|......+|+.|++. ++.+..++.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~-~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ-GSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc-Ccccccccc
Confidence 001112 2355555556656666655556778888888 777777776
Q ss_pred hHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCC
Q 039257 107 GFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFS 184 (210)
Q Consensus 107 ~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 184 (210)
+ +..+++|++++++++..+. +|. ++.+++|++|++++| .+..+|..++++++|+.|++++|..++.+|.. + +++
T Consensus 629 ~-~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~ 704 (1153)
T PLN03210 629 G-VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLK 704 (1153)
T ss_pred c-cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCC
Confidence 6 6778888888888774455 663 677888888888887 46688888888888888888888778888874 3 678
Q ss_pred CCCeEEeeccccCCCcc
Q 039257 185 RLRGLRKFITCASSQLK 201 (210)
Q Consensus 185 ~L~~L~l~~~~~~~~~~ 201 (210)
+|+.|++++|.....+|
T Consensus 705 sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCEEeCCCCCCccccc
Confidence 88888888776554443
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=2.9e-17 Score=115.34 Aligned_cols=137 Identities=21% Similarity=0.375 Sum_probs=124.9
Q ss_pred ccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC
Q 039257 57 EEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK 134 (210)
Q Consensus 57 ~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~ 134 (210)
.++|....++.+.+|.+++|+++.+|.. ..+.+|++|++. ++.++++|.+ ++.+++|+.|+++-| ++. +|.+|+.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~-nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLS-NNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcc-cchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 3456666777899999999999988777 889999999999 9999999998 899999999999999 999 9999999
Q ss_pred CCcCCEEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257 135 LGSLQLLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 135 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
++.|+.||+++|++. .+|..+..+..|+.|++++| ..+-+|+. ++++++|+.|.+..|.+.+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh
Confidence 999999999999877 68999999999999999999 89999998 9999999999999998743
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.50 E-value=1.9e-13 Score=123.11 Aligned_cols=132 Identities=24% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEe
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLD 142 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~ 142 (210)
++|++|++++|.+.+......+++|++|+++ ++.+. .+|.. +..+++|++|++++| .+. +|..++++++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls-~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLS-NNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECc-CCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCeee
Confidence 4444444444444321111234555555555 44444 33333 566666666666666 554 566666666666666
Q ss_pred ccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 143 ISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 143 l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
+++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|++|++++|.+.+.+|
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccC
Confidence 6666554 45555566666666666665333345543 5555666666665555544433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=2.1e-13 Score=122.76 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=98.4
Q ss_pred EecCCCCccCCCccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCccce
Q 039257 50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
.+.++.+........++++++|++++|.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +.++++|++|++++| .+
T Consensus 124 ~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l 200 (968)
T PLN00113 124 NLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG-GNVLVGKIPNS-LTNLTSLEFLTLASN-QL 200 (968)
T ss_pred ECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECc-cCcccccCChh-hhhCcCCCeeeccCC-CC
Confidence 3334444322223456778888888887763 4433 667788888887 55554 44444 677888888888877 66
Q ss_pred e--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 127 K--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 127 ~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
. +|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++.+++|+.|++++|.+.+.+|
T Consensus 201 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc
Confidence 5 6777777777788877777766 56777777777777777777333455554 6777777777777776655544
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.39 E-value=2.2e-13 Score=98.03 Aligned_cols=128 Identities=28% Similarity=0.369 Sum_probs=47.1
Q ss_pred CCCccCCCCccEEEeecccccccCCCC-CCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccc-cCC
Q 039257 59 APDVKEWENVRRLSLMQNQIETLSEVP-TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGM-SKL 135 (210)
Q Consensus 59 ~~~~~~~~~l~~L~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l 135 (210)
.+......+++.|++.++.++.+.... .+.+|+.|+++ +|.++.++. +..++.|++|++++| .++ +++.+ ..+
T Consensus 12 ~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls-~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 12 IAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLS-NNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp ------------------------S--TT-TT--EEE-T-TS--S--TT------TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccccccccchhhhhcCCCEEECC-CCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhC
Confidence 333334456778888888888776553 57788888888 888888776 677888888888888 888 76544 357
Q ss_pred CcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEe
Q 039257 136 GSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRK 191 (210)
Q Consensus 136 ~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l 191 (210)
++|+.|.+++|.|..+. ..+..+++|+.|++.+| .+...+. .++..+++|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCC
Confidence 88888888888777543 35567788888888888 5554443 23567788888775
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.37 E-value=6.3e-14 Score=114.80 Aligned_cols=153 Identities=20% Similarity=0.268 Sum_probs=69.6
Q ss_pred EecCCCCccCC--CccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 50 VCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 50 ~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.++++.++.+. .+..+..|..|-++.|.++.+|.. ..+++|+.|++. .|.++.+....|+++++|+.|.+.+| .
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn-rN~irive~ltFqgL~Sl~nlklqrN-~ 256 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN-RNRIRIVEGLTFQGLPSLQNLKLQRN-D 256 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc-ccceeeehhhhhcCchhhhhhhhhhc-C
Confidence 34444444433 233344455555555555555443 335555555555 44444443333555555555555555 4
Q ss_pred ee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257 126 LK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV 202 (210)
Q Consensus 126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 202 (210)
+. + ...|..+..+++|++..|+++.+.++ +.+|++|+.|+++.| .+.+|....+...++|+.|+++.|.+ ..+++
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i-~~l~~ 334 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRI-TRLDE 334 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEecccccc-ccCCh
Confidence 44 3 23344444444555554444444322 234444444444444 44444333334444444444444444 33333
Q ss_pred hhhh
Q 039257 203 STWE 206 (210)
Q Consensus 203 ~~f~ 206 (210)
.+|.
T Consensus 335 ~sf~ 338 (873)
T KOG4194|consen 335 GSFR 338 (873)
T ss_pred hHHH
Confidence 4433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.36 E-value=3.5e-13 Score=110.53 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=117.0
Q ss_pred EecCCCCccCCCccC--CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 50 VCAGAGLEEAPDVKE--WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 50 ~~~~~~~~~~~~~~~--~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.++.+.++.+|.... -..++.|++.+|.|+.+... ..+.+|.+|.++ .|.++.+|.-.|.+++.|+.|++.+| .
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs-rNrittLp~r~Fk~L~~L~~LdLnrN-~ 232 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS-RNRITTLPQRSFKRLPKLESLDLNRN-R 232 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc-cCcccccCHHHhhhcchhhhhhcccc-c
Confidence 344555555553222 13688999999999876544 677889999999 99999999877888999999999999 9
Q ss_pred ee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 126 LK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+. + .-.|.++++|+.|.+.+|.+..+.+ .+..+.++++|++..| .+.....+.+..+++|++|+++.|.+.
T Consensus 233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhh
Confidence 88 6 5678889999999999999988764 4578889999999999 788777655788999999999999884
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.34 E-value=8e-14 Score=109.63 Aligned_cols=108 Identities=25% Similarity=0.284 Sum_probs=96.7
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchh-hhcCCCCc
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLT 162 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~ 162 (210)
+.+++|..|+++ ++.+.++|.+ ++.+..||.++++.| ++. +|+.+..+..++.+-.+.|.+..+|.. +.++.+|.
T Consensus 432 ~~l~kLt~L~L~-NN~Ln~LP~e-~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 432 SQLQKLTFLDLS-NNLLNDLPEE-MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred Hhhhcceeeecc-cchhhhcchh-hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 778899999999 9999999988 778888999999999 999 998888787788877777888888755 89999999
Q ss_pred EEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 163 CLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 163 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+||+.+| .+..+|+. +++|++|++|.+.||++.
T Consensus 509 tLDL~nN-dlq~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNN-DLQQIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCC-chhhCChh-hccccceeEEEecCCccC
Confidence 9999999 99999996 999999999999999985
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.33 E-value=7.2e-14 Score=115.62 Aligned_cols=143 Identities=24% Similarity=0.368 Sum_probs=92.2
Q ss_pred EEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCc--ccchhHhcCCCCCcEEecCCcc
Q 039257 49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELK--MIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
+.++..++..+|+ ...+.+++.|++.+|++..+-.. ..++.||++.+. .|.++ .+|.+ +..+..|.+||+++|
T Consensus 37 LkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R-~N~LKnsGiP~d-iF~l~dLt~lDLShN- 113 (1255)
T KOG0444|consen 37 LKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR-DNNLKNSGIPTD-IFRLKDLTILDLSHN- 113 (1255)
T ss_pred EEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh-ccccccCCCCch-hcccccceeeecchh-
Confidence 4455566666663 34445667777777776655443 666677777776 55554 46666 556777777777777
Q ss_pred cee-ecccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 125 NLK-FLVGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
.++ +|..+...+++..|++++|+|..+|..+ .+|+-|-.||+++| .+..+|+. +..+..|++|.+++|++
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChh
Confidence 777 7766666667777777777777776543 56666666777776 66667665 66666666666666654
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=2.8e-12 Score=92.29 Aligned_cols=121 Identities=25% Similarity=0.342 Sum_probs=57.2
Q ss_pred ccEEEecCCCCccCCCcc-CCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 46 INFLVCAGAGLEEAPDVK-EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~-~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
...+...+..++.+.... .+.+++.|++++|.++.++....++.|++|+++ +|.++.++......+++|+.|.+++|
T Consensus 21 ~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~-~N~I~~i~~~l~~~lp~L~~L~L~~N- 98 (175)
T PF14580_consen 21 LRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLS-NNRISSISEGLDKNLPNLQELYLSNN- 98 (175)
T ss_dssp ---------------S--TT-TT--EEE-TTS--S--TT----TT--EEE---SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred cccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccC-CCCCCccccchHHhCCcCCEEECcCC-
Confidence 345677788888887776 577899999999999999888889999999999 99999997653457999999999999
Q ss_pred cee-ec--ccccCCCcCCEEeccCCcCcccc----hhhhcCCCCcEEEccC
Q 039257 125 NLK-FL--VGMSKLGSLQLLDISQNAIEELP----EELKLLINLTCLNLRG 168 (210)
Q Consensus 125 ~~~-l~--~~~~~l~~L~~L~l~~~~l~~lp----~~~~~l~~L~~L~l~~ 168 (210)
.+. +. ..+..+++|+.|++.+|+++..+ ..+..+|+|+.||-..
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 998 53 56678999999999999998665 2568899999998543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=2.7e-13 Score=112.33 Aligned_cols=132 Identities=24% Similarity=0.343 Sum_probs=95.8
Q ss_pred CccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcC
Q 039257 61 DVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSL 138 (210)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L 138 (210)
++..+..+..|++++|+++.+|.. ....+..+|+++ +|.+..||...|-++..|-+||+++| ++. +|+.+..+.+|
T Consensus 98 diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS-~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 98 DIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS-YNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSML 175 (1255)
T ss_pred hhcccccceeeecchhhhhhcchhhhhhcCcEEEEcc-cCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhh
Confidence 455667788888888888888776 666778888888 88888888887888888888888888 888 88777777777
Q ss_pred CEEeccCCcCc-----ccc---------------------hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEee
Q 039257 139 QLLDISQNAIE-----ELP---------------------EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKF 192 (210)
Q Consensus 139 ~~L~l~~~~l~-----~lp---------------------~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~ 192 (210)
++|.+++|++. .+| .++..+.+|..+|++.| .+..+|.. +.++++|+.|+++
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPec-ly~l~~LrrLNLS 253 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPEC-LYKLRNLRRLNLS 253 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHH-HhhhhhhheeccC
Confidence 77777776543 233 34445556666666666 66666664 6666677777776
Q ss_pred cccc
Q 039257 193 ITCA 196 (210)
Q Consensus 193 ~~~~ 196 (210)
+|.+
T Consensus 254 ~N~i 257 (1255)
T KOG0444|consen 254 GNKI 257 (1255)
T ss_pred cCce
Confidence 6665
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=9e-11 Score=107.27 Aligned_cols=142 Identities=26% Similarity=0.300 Sum_probs=117.2
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
.+.+.+..++.+|....+.+|+.|++.++.++.++.. ..+++|+.++++++..++.+|. +..+++|+.|++++|..+
T Consensus 593 ~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L 670 (1153)
T PLN03210 593 LLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSL 670 (1153)
T ss_pred EEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCc
Confidence 4455566677778766778999999999999888765 7789999999995566778875 788999999999998667
Q ss_pred e-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 127 K-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
. +|..++++.+|+.|++++| .++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++.+|.+
T Consensus 671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i 737 (1153)
T PLN03210 671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAI 737 (1153)
T ss_pred cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcc
Confidence 7 9999999999999999997 677888766 7899999999999777777752 45788888888875
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.23 E-value=5.9e-13 Score=104.46 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=45.9
Q ss_pred ccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 132 MSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 132 ~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
|+.+++|+.|++++|.++++. ..+..+..++.|.+..| .+..+...+|..+..|+.|++.+|+++ .+.+.+|..+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCCeeE-EEeccccccc
Confidence 444555555666665555443 23345555555555555 555555556777888889999998884 4445566544
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.22 E-value=4e-13 Score=105.76 Aligned_cols=125 Identities=23% Similarity=0.362 Sum_probs=97.1
Q ss_pred CCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-eccccc-CCCcCCEE
Q 039257 65 WENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMS-KLGSLQLL 141 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~-~l~~L~~L 141 (210)
|+.++.++...|.++.+|.. .++..|.-|++. .+.+..+|. |.++..|..+.++.| .++ +|.+.+ ++.++..|
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~-~Nki~~lPe--f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGGLESLELLYLR-RNKIRFLPE--FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcchhhhHHHHhh-hcccccCCC--CCccHHHHHHHhccc-HHHhhHHHHhcccccceee
Confidence 55566666666666666665 667777777777 777777774 777777777777777 777 775555 78888888
Q ss_pred eccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 142 DISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 142 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
|++.|.++++|.+++.+.+|..||+++| .++.+|.. ++++ .|+.|-+-||++
T Consensus 258 DLRdNklke~Pde~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 258 DLRDNKLKEVPDEICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGNPL 309 (565)
T ss_pred eccccccccCchHHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCCch
Confidence 8888888888888888888888888888 88888886 8888 888888888876
No 17
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=1.1e-12 Score=100.00 Aligned_cols=132 Identities=26% Similarity=0.416 Sum_probs=113.2
Q ss_pred ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
+..|+.+..+++++|.|+.+... .-.+.++.|+++ .|.+..+.. +..+++|+.||+++| .++ +..+--.+.+.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIK 355 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEe
Confidence 45678899999999999988877 667999999999 999998887 778999999999999 888 765555788899
Q ss_pred EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCCC
Q 039257 140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.|.+++|.+..+ ++++++.+|..||+++| .+..+.. ..+++++.|+++.+.+|++.+.
T Consensus 356 tL~La~N~iE~L-SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 356 TLKLAQNKIETL-SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eeehhhhhHhhh-hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999999888 57899999999999999 7776653 2289999999999999998544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.20 E-value=1.3e-10 Score=101.04 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=81.2
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
.-+.+.+.+++.+|..- .+.++.|++.+|.++.+|... ..+|+.|+++ +|.++.+|.. + ..+|+.|++++| .+
T Consensus 181 ~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls-~N~LtsLP~~-l--~~~L~~L~Ls~N-~L 253 (754)
T PRK15370 181 TELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENL-QGNIKTLYAN-SNQLTSIPAT-L--PDTIQEMELSIN-RI 253 (754)
T ss_pred eEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhh-ccCCCEEECC-CCccccCChh-h--hccccEEECcCC-cc
Confidence 34556677788887532 257888999999888877642 2578888888 7778877765 2 236777777777 77
Q ss_pred e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
. +|..+. .+|++|++++|.++.+|..+. .+|+.|++++| .++.+|.
T Consensus 254 ~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 254 TELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred CcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcc
Confidence 7 765553 367777777777776665442 46777777776 5666654
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.18 E-value=2.1e-12 Score=110.61 Aligned_cols=137 Identities=20% Similarity=0.236 Sum_probs=108.3
Q ss_pred CCccEEEeecccccc--cCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEe
Q 039257 66 ENVRRLSLMQNQIET--LSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLD 142 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~--l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~ 142 (210)
+.++.|.+.+|.++. +|...++.+|++|+++ +|.++.+|...+.+++.|+.|+++|| +++ +|..+-++..|++|.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs-yNrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLS-YNRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeec-ccccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHh
Confidence 356677777777764 5555888999999999 99999999888899999999999999 999 998888999999999
Q ss_pred ccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 143 ISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 143 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
..+|.+..+| ++..++.|+.+|++.| .+..+-.......++|++||++||.. ..+....|+.
T Consensus 437 ahsN~l~~fP-e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~-l~~d~~~l~~ 498 (1081)
T KOG0618|consen 437 AHSNQLLSFP-ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR-LVFDHKTLKV 498 (1081)
T ss_pred hcCCceeech-hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc-cccchhhhHH
Confidence 9999999898 7889999999999988 66554322122237899999999985 3334444443
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=1.3e-09 Score=94.73 Aligned_cols=88 Identities=18% Similarity=0.192 Sum_probs=57.8
Q ss_pred HHHHHHhhhccccccEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCC
Q 039257 33 MALWIACETEKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLM 112 (210)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 112 (210)
.|....+++.......+.+....++.+|..- ...++.|.+.+|.++.+|.. .++|++|+++ +|.++.+|.. .
T Consensus 190 ~a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs-~N~LtsLP~l----p 261 (788)
T PRK15387 190 AVVQKMRACLNNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVS-GNQLTSLPVL----P 261 (788)
T ss_pred HHHHHHHHHhcCCCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEec-CCccCcccCc----c
Confidence 3333333333344556778888888888632 24788889999888887753 5788888888 7788877642 2
Q ss_pred CCCcEEecCCcccee-ec
Q 039257 113 PSLKVLKMSNCWNLK-FL 129 (210)
Q Consensus 113 ~~L~~L~l~~~~~~~-l~ 129 (210)
++|+.|++.+| .++ +|
T Consensus 262 ~sL~~L~Ls~N-~L~~Lp 278 (788)
T PRK15387 262 PGLLELSIFSN-PLTHLP 278 (788)
T ss_pred cccceeeccCC-chhhhh
Confidence 45566666666 555 44
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.11 E-value=2.1e-10 Score=99.49 Aligned_cols=81 Identities=23% Similarity=0.191 Sum_probs=61.4
Q ss_pred CCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEe
Q 039257 113 PSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK 191 (210)
Q Consensus 113 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l 191 (210)
.+|+.|++++| .++ +|.. ..+|+.|++++|.++.+|... .+|+.|++++| .++.+|.. +..+++|+.+++
T Consensus 382 ~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~N-qLt~LP~s-l~~L~~L~~LdL 452 (788)
T PRK15387 382 SGLKELIVSGN-RLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRN-QLTRLPES-LIHLSSETTVNL 452 (788)
T ss_pred cccceEEecCC-cccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccC-cccccChH-HhhccCCCeEEC
Confidence 35677777777 776 6643 246778888888888777532 45778889888 78899986 889999999999
Q ss_pred eccccCCCcch
Q 039257 192 FITCASSQLKV 202 (210)
Q Consensus 192 ~~~~~~~~~~~ 202 (210)
++|++.+..+.
T Consensus 453 s~N~Ls~~~~~ 463 (788)
T PRK15387 453 EGNPLSERTLQ 463 (788)
T ss_pred CCCCCCchHHH
Confidence 99999766543
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.10 E-value=7.7e-12 Score=107.22 Aligned_cols=144 Identities=26% Similarity=0.335 Sum_probs=114.6
Q ss_pred EecCCCCccCCCccC-CCCccEEEeecccccccCCC---------------------------CCCCCccEEEcccCCCC
Q 039257 50 VCAGAGLEEAPDVKE-WENVRRLSLMQNQIETLSEV---------------------------PTCPHFVTLFLDFNGEL 101 (210)
Q Consensus 50 ~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~l~~~---------------------------~~~~~L~~L~l~~~~~~ 101 (210)
.+...++..+|.... ++.++.|+++.|.+..+|.. ..++.|+.|.+. +|.+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-nN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-NNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-cCcc
Confidence 344556666665544 77889999998887765432 233445556666 6666
Q ss_pred cc--cchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 102 KM--IADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 102 ~~--~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
++ +|. +.++++|++|+++.| ++. +| ..+.++..|+.|+++||.++.+|.++.++..|++|...+| .+..+|.
T Consensus 372 td~c~p~--l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe 447 (1081)
T KOG0618|consen 372 TDSCFPV--LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPE 447 (1081)
T ss_pred cccchhh--hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechh
Confidence 63 333 779999999999999 999 87 5677899999999999999999999999999999999999 8999994
Q ss_pred ccccCCCCCCeEEeeccccCCCc
Q 039257 178 QLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 178 ~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
+..++.|+.+|++.|.+.-..
T Consensus 448 --~~~l~qL~~lDlS~N~L~~~~ 468 (1081)
T KOG0618|consen 448 --LAQLPQLKVLDLSCNNLSEVT 468 (1081)
T ss_pred --hhhcCcceEEecccchhhhhh
Confidence 899999999999999886443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=2.4e-11 Score=95.61 Aligned_cols=148 Identities=23% Similarity=0.282 Sum_probs=120.1
Q ss_pred cccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 45 KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
+...+.|.+.+++++|.--. .....+.+..|+|+.+|.. ..+++||.|+++ .|.|+.|.++.|.+++.+-.|-+.+
T Consensus 47 ~g~~VdCr~~GL~eVP~~LP-~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS-~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 47 EGGIVDCRGKGLTEVPANLP-PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLS-KNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred CCceEEccCCCcccCcccCC-CcceEEEeccCCcccCChhhccchhhhceeccc-ccchhhcChHhhhhhHhhhHHHhhc
Confidence 35677888999999885332 4677888889999988876 788999999999 8889998888899998887766666
Q ss_pred -cccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 123 -CWNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 123 -~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
| +|+ +| ..|+++..|+.|.+.-|.+.-+ ...+..++++..|.+-+| .+..++...+..+..++++++..|++
T Consensus 125 ~N-kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 125 NN-KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred CC-chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcc
Confidence 6 888 87 6778888888888887777744 466788889988999888 88888886688899999999888874
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=6.5e-10 Score=96.70 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=72.3
Q ss_pred EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK- 127 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 127 (210)
+.+.++.++.+|... ...++.|++++|.+..+|... ..+|+.|+++ ++.+..+|.. + ..+|+.|++++| .++
T Consensus 225 L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls-~N~L~~LP~~-l--~~sL~~L~Ls~N-~Lt~ 297 (754)
T PRK15370 225 LYANSNQLTSIPATL-PDTIQEMELSINRITELPERL-PSALQSLDLF-HNKISCLPEN-L--PEELRYLSVYDN-SIRT 297 (754)
T ss_pred EECCCCccccCChhh-hccccEEECcCCccCcCChhH-hCCCCEEECc-CCccCccccc-c--CCCCcEEECCCC-cccc
Confidence 344555555555321 235666666666665554431 1345556665 5555555543 1 134555555555 555
Q ss_pred eccccc-------------------CCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCe
Q 039257 128 FLVGMS-------------------KLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRG 188 (210)
Q Consensus 128 l~~~~~-------------------~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~ 188 (210)
+|..+. -.++|++|++++|.++.+|..+ .++|+.|++++| .+..+|.. + .++|+.
T Consensus 298 LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~ 371 (754)
T PRK15370 298 LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL--PPELQVLDVSKN-QITVLPET-L--PPTITT 371 (754)
T ss_pred CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCChhh--cCcccEEECCCC-CCCcCChh-h--cCCcCE
Confidence 443221 0134555555555555555443 246666666666 56666653 3 246666
Q ss_pred EEeeccccCCCcch
Q 039257 189 LRKFITCASSQLKV 202 (210)
Q Consensus 189 L~l~~~~~~~~~~~ 202 (210)
|++++|.+. .+|.
T Consensus 372 LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 372 LDVSRNALT-NLPE 384 (754)
T ss_pred EECCCCcCC-CCCH
Confidence 666666653 3443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=2.3e-11 Score=99.63 Aligned_cols=132 Identities=24% Similarity=0.340 Sum_probs=116.1
Q ss_pred ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257 62 VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL 140 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 140 (210)
+..+..+..++++.|++..+|.....--|+.|.++ +|.++.+|.. ++....|..|+.+.| .+. +|..++++..|+.
T Consensus 117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~s-NNkl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVS-NNKLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEe-cCccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHH
Confidence 45566788899999999988888666668999999 9999999988 778889999999999 888 9999999999999
Q ss_pred EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
|.+++|.+..+|+++..| .|..||++.| ++..||.. |.+|+.|++|-+.+|++.+.
T Consensus 194 l~vrRn~l~~lp~El~~L-pLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 194 LNVRRNHLEDLPEELCSL-PLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred HHHhhhhhhhCCHHHhCC-ceeeeecccC-ceeecchh-hhhhhhheeeeeccCCCCCC
Confidence 999999999999998854 4888999999 99999998 99999999999999998554
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1.5e-09 Score=64.60 Aligned_cols=57 Identities=35% Similarity=0.486 Sum_probs=31.8
Q ss_pred CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCc
Q 039257 89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA 147 (210)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~ 147 (210)
+|++|+++ .+.++.++++.|.++++|++|++++| .++ + |..+.++++|++|++++|+
T Consensus 2 ~L~~L~l~-~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLS-NNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEET-SSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECC-CCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555 55555555554555555555555555 555 4 3455555555555555554
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=1e-09 Score=65.41 Aligned_cols=58 Identities=34% Similarity=0.473 Sum_probs=31.7
Q ss_pred cCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 137 SLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 137 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
+|++|++++|.++.+|. .+..+++|++|++++| .+..++...|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555543 3355555555555555 5555555445555556666555554
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.92 E-value=6.4e-09 Score=89.54 Aligned_cols=107 Identities=22% Similarity=0.371 Sum_probs=70.1
Q ss_pred ccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEE
Q 039257 90 FVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLN 165 (210)
Q Consensus 90 L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~ 165 (210)
++.|++. ++.+. .+|.. +..+++|+.|++++| .+. +|..++.+.+|+.|++++|.++ .+|..++++++|+.|+
T Consensus 420 v~~L~L~-~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLD-NQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECC-CCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 5566776 55555 44444 677777777777777 665 6767777777777777777766 5677777777777777
Q ss_pred ccCCCCCCCCCcccccC-CCCCCeEEeeccccCCCc
Q 039257 166 LRGTGQLNKIPRQLISN-FSRLRGLRKFITCASSQL 200 (210)
Q Consensus 166 l~~~~~~~~lp~~~~~~-l~~L~~L~l~~~~~~~~~ 200 (210)
+++|.....+|.. ++. ..++..+++.+|......
T Consensus 497 Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 497 LNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CcCCcccccCChH-HhhccccCceEEecCCccccCC
Confidence 7777444566664 443 245566777666654443
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.87 E-value=1.6e-09 Score=88.49 Aligned_cols=146 Identities=26% Similarity=0.384 Sum_probs=93.1
Q ss_pred EEecCCCCccCCCccCCC--CccEEEeecccccccC-CCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 49 LVCAGAGLEEAPDVKEWE--NVRRLSLMQNQIETLS-EVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.......++.++...... +++.|++.+|.+..++ ....+++|+.|+++ .+.+.+++.. ....+.|+.|++++| .
T Consensus 121 L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~-~~~~~~L~~L~ls~N-~ 197 (394)
T COG4886 121 LDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS-FNDLSDLPKL-LSNLSNLNNLDLSGN-K 197 (394)
T ss_pred EecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC-Cchhhhhhhh-hhhhhhhhheeccCC-c
Confidence 345556666666655443 6777777777777764 33667777777777 7777777764 336677777777777 7
Q ss_pred ee-ecccccCCCcCCEEeccCC-----------------------cCcccchhhhcCCCCcEEEccCCCCCCCCCccccc
Q 039257 126 LK-FLVGMSKLGSLQLLDISQN-----------------------AIEELPEELKLLINLTCLNLRGTGQLNKIPRQLIS 181 (210)
Q Consensus 126 ~~-l~~~~~~l~~L~~L~l~~~-----------------------~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~ 181 (210)
+. +|..+..+..|+++.+++| .+..++..++.++.++.|++++| .+..++. ++
T Consensus 198 i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~--~~ 274 (394)
T COG4886 198 ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QISSISS--LG 274 (394)
T ss_pred cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccccccc--cc
Confidence 77 6654444444555555555 33333344556666777777777 6666665 66
Q ss_pred CCCCCCeEEeeccccCCCc
Q 039257 182 NFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 182 ~l~~L~~L~l~~~~~~~~~ 200 (210)
.+.+++.++++++......
T Consensus 275 ~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 275 SLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccCccCEEeccCccccccc
Confidence 7777777777776664443
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=4e-10 Score=86.27 Aligned_cols=120 Identities=31% Similarity=0.359 Sum_probs=98.2
Q ss_pred CCCCccCC-CccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc
Q 039257 53 GAGLEEAP-DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV 130 (210)
Q Consensus 53 ~~~~~~~~-~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~ 130 (210)
++.++++- ++.-.++++.|++++|.+..+.....+++|..|+++ +|.+..+..- -.++.+++.|.+++| .++ +.
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS-~N~Ls~~~Gw-h~KLGNIKtL~La~N-~iE~LS- 368 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLS-GNLLAECVGW-HLKLGNIKTLKLAQN-KIETLS- 368 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecc-cchhHhhhhh-HhhhcCEeeeehhhh-hHhhhh-
Confidence 33444432 344556899999999999988887889999999999 9988876652 467899999999999 887 64
Q ss_pred cccCCCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 131 GMSKLGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 131 ~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
+++.+-+|.+||+++|+|+++. .+|+++++|+++.+.+| .+..+|.
T Consensus 369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~vd 416 (490)
T KOG1259|consen 369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN-PLAGSVD 416 (490)
T ss_pred hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC-Cccccch
Confidence 5788899999999999999765 57899999999999999 7777665
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=8.6e-09 Score=88.76 Aligned_cols=87 Identities=25% Similarity=0.345 Sum_probs=78.7
Q ss_pred CcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEe
Q 039257 115 LKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRK 191 (210)
Q Consensus 115 L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l 191 (210)
++.|+++++ .+. +|..++.+.+|+.|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|++|++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 678999999 888 7999999999999999999988 88999999999999999999544578876 999999999999
Q ss_pred eccccCCCcchh
Q 039257 192 FITCASSQLKVS 203 (210)
Q Consensus 192 ~~~~~~~~~~~~ 203 (210)
++|.+.+.+|..
T Consensus 498 s~N~l~g~iP~~ 509 (623)
T PLN03150 498 NGNSLSGRVPAA 509 (623)
T ss_pred cCCcccccCChH
Confidence 999999888864
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.80 E-value=3.4e-09 Score=86.61 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=90.3
Q ss_pred cCCCccCCCCccEEEeecccccccCCCCCCC--CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC
Q 039257 58 EAPDVKEWENVRRLSLMQNQIETLSEVPTCP--HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK 134 (210)
Q Consensus 58 ~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~ 134 (210)
....+...+.+..+.+.++.+..++...... +|+.|+++ .+.+..++.. ...++.|+.|+++.| .+. +|...+.
T Consensus 108 ~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~-~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~ 184 (394)
T COG4886 108 NISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLS-DNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSN 184 (394)
T ss_pred CchhhhcccceeEEecCCcccccCccccccchhhccccccc-ccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhh
Confidence 3444445567899999999999998875553 89999999 9999998644 789999999999999 999 9887778
Q ss_pred CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCC
Q 039257 135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 169 (210)
++.|..|++++|.++.+|..+..+..|+.+.+++|
T Consensus 185 ~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 185 LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 99999999999999999886655566777777766
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.67 E-value=2.6e-08 Score=88.25 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=97.4
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeeccc--ccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQ--IETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~--~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
.+..-+.....++.-...++++.|-+..+. +..++. +..++.|++|+++++..+..+|.+ ++.+-+||+|+++++
T Consensus 527 r~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT 605 (889)
T ss_pred EEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC
Confidence 344455555556655555689999999986 555555 478999999999987788899998 899999999999999
Q ss_pred ccee-ecccccCCCcCCEEeccCCc-CcccchhhhcCCCCcEEEccCC
Q 039257 124 WNLK-FLVGMSKLGSLQLLDISQNA-IEELPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 124 ~~~~-l~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~ 169 (210)
.++ +|.+++++..|.+|++..+. +..+|.....+++|++|.+...
T Consensus 606 -~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 606 -GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred -CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 999 99999999999999999985 4455666677999999998765
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.60 E-value=9.2e-09 Score=84.74 Aligned_cols=127 Identities=24% Similarity=0.332 Sum_probs=109.6
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.|+.+..+++..+|.-...--|+.|.+++|+++.+|.. ....+|..|+.+ +|.+..+|.. +.++.+|+.|.+.+| .
T Consensus 124 t~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s-~nei~slpsq-l~~l~slr~l~vrRn-~ 200 (722)
T KOG0532|consen 124 TFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS-KNEIQSLPSQ-LGYLTSLRDLNVRRN-H 200 (722)
T ss_pred HHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhh-hhhhhhchHH-hhhHHHHHHHHHhhh-h
Confidence 35566677777787665656799999999999988877 666889999999 9999999998 889999999999999 8
Q ss_pred ee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257 126 LK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 126 ~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (210)
+. +|+.++.+ .|..||++.|++..+|-.+.++..|++|-|.+| .+.+=|.+
T Consensus 201 l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN-PLqSPPAq 252 (722)
T KOG0532|consen 201 LEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN-PLQSPPAQ 252 (722)
T ss_pred hhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccC-CCCCChHH
Confidence 88 99888855 488999999999999999999999999999999 78877765
No 35
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.57 E-value=3.1e-09 Score=89.82 Aligned_cols=142 Identities=25% Similarity=0.364 Sum_probs=103.9
Q ss_pred EEecCCCCccCCCccCCCCccEEEeeccccccc---------------------------------CCCCCCCCccEEEc
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETL---------------------------------SEVPTCPHFVTLFL 95 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l---------------------------------~~~~~~~~L~~L~l 95 (210)
+.....+-++.-++..+++||+|.+.++.+..+ ........|.+.++
T Consensus 92 ~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~f 171 (1096)
T KOG1859|consen 92 LPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASF 171 (1096)
T ss_pred cccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhc
Confidence 344455555544566788999999998865321 11133456677777
Q ss_pred ccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCC
Q 039257 96 DFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLN 173 (210)
Q Consensus 96 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~ 173 (210)
+ +|.+.....+ +.-++.++.|++++| ++. +. .+..++.|++||+++|.+..+|. +...+ +|..|.+++| .++
T Consensus 172 s-yN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~ 245 (1096)
T KOG1859|consen 172 S-YNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALT 245 (1096)
T ss_pred c-hhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHH
Confidence 7 7777766666 677888999999999 887 65 67788899999999998888773 22233 3888899988 788
Q ss_pred CCCcccccCCCCCCeEEeeccccCC
Q 039257 174 KIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 174 ~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
.+-. +.++++|+.||++.|.+.+
T Consensus 246 tL~g--ie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 246 TLRG--IENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhh--HHhhhhhhccchhHhhhhc
Confidence 8876 8889999999999888754
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.54 E-value=7e-08 Score=76.37 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=26.7
Q ss_pred cCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCC
Q 039257 110 QLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~ 169 (210)
..++.|++|++++| .++ ++..+...++|++|++++|.++. ++..+..+++|++|++++|
T Consensus 162 ~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 162 RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 34445555555555 433 11222333455555555554431 2223334455555555555
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=9.6e-08 Score=75.59 Aligned_cols=128 Identities=21% Similarity=0.289 Sum_probs=90.3
Q ss_pred CCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCcccee------e
Q 039257 66 ENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNLK------F 128 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------l 128 (210)
+.++.+++.+|.+.. +... ..+.+|++|+++ .+.+.. ++.. +..+++|++|++++| .++ +
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLA-NNGIGDAGIRALAEG-LKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECc-CCCCchHHHHHHHHH-HHhCCCCCEEeccCC-ccChHHHHHH
Confidence 577888888887762 1111 455789999998 666662 2222 456679999999999 775 2
Q ss_pred cccccCCCcCCEEeccCCcCccc-chhhh-----cCCCCcEEEccCCCCCC-----CCCcccccCCCCCCeEEeeccccC
Q 039257 129 LVGMSKLGSLQLLDISQNAIEEL-PEELK-----LLINLTCLNLRGTGQLN-----KIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~~~-----~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+..+..+++|++|++++|.++.. ...+. ..+.|+.|++++| .++ .+... +..+++|+.+++++|.+.
T Consensus 214 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 214 AETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEV-LAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHH-HhcCCCccEEECCCCCCc
Confidence 34566788999999999987732 12221 2478999999999 664 23332 566789999999999984
Q ss_pred C
Q 039257 198 S 198 (210)
Q Consensus 198 ~ 198 (210)
.
T Consensus 292 ~ 292 (319)
T cd00116 292 E 292 (319)
T ss_pred H
Confidence 3
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.50 E-value=2.2e-07 Score=51.24 Aligned_cols=39 Identities=44% Similarity=0.630 Sum_probs=22.3
Q ss_pred cCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCC
Q 039257 137 SLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP 176 (210)
Q Consensus 137 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp 176 (210)
+|++|++++|+++.+|..++++++|+.|++++| .+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 456666666666666555666666666666666 555554
No 39
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.47 E-value=3.1e-07 Score=66.62 Aligned_cols=120 Identities=22% Similarity=0.326 Sum_probs=74.2
Q ss_pred EEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccC-CCcCCEEeccCC
Q 039257 70 RLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSK-LGSLQLLDISQN 146 (210)
Q Consensus 70 ~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~-l~~L~~L~l~~~ 146 (210)
.+++.+.++..+... ....+...++++ .+.+..++. |..++.|.+|.+.+| +++ +.+.+.. +++|+.|.+.+|
T Consensus 23 e~~LR~lkip~ienlg~~~d~~d~iDLt-dNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 23 ELDLRGLKIPVIENLGATLDQFDAIDLT-DNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccchhhccccccccceeccc-ccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCc
Confidence 344444444333222 223456667777 777776665 677777777777777 777 6544543 466777777777
Q ss_pred cCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEeecc
Q 039257 147 AIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKFIT 194 (210)
Q Consensus 147 ~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~ 194 (210)
++.++. ..+..+++|++|.+-+| .++.... .++..+++|+.||+...
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred chhhhhhcchhccCCccceeeecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence 777553 23456677777777777 5554432 34567778888877544
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.38 E-value=1.7e-08 Score=68.90 Aligned_cols=108 Identities=17% Similarity=0.260 Sum_probs=78.5
Q ss_pred ccEEEeecccccccCCC----CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEe
Q 039257 68 VRRLSLMQNQIETLSEV----PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLD 142 (210)
Q Consensus 68 l~~L~l~~~~~~~l~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~ 142 (210)
+..++++.+++..+++. .....|...+++ .|.++.+|+.+-.+++..+.+++++| .++ +|..+-.++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls-~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLS-DNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecc-cchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 34455555655433322 444567777888 88888888875566778888888888 888 887787888888888
Q ss_pred ccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257 143 ISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 143 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (210)
++.|.+...|..+..|.++..|+..+| ....+|-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 888888877877777888888888777 66677654
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=5.9e-07 Score=49.47 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccc
Q 039257 113 PSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELP 152 (210)
Q Consensus 113 ~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp 152 (210)
++|++|++++| .++ +|..++++++|++|++++|.++.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 36778888888 888 7767788888888888888777654
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=4.9e-09 Score=88.63 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=103.4
Q ss_pred ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc-cccCCCcC
Q 039257 62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV-GMSKLGSL 138 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~-~~~~l~~L 138 (210)
...|.+|...++++|.+..+... .-++.++.|+++ .|.+.++.. +..+++|..||++.| .+. +|. ....+ .|
T Consensus 160 s~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLs-hNk~~~v~~--Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 160 SPVWNKLATASFSYNRLVLMDESLQLLPALESLNLS-HNKFTKVDN--LRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL 234 (1096)
T ss_pred chhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccc-hhhhhhhHH--HHhcccccccccccc-hhccccccchhhh-hh
Confidence 33567888999999998876665 567899999999 888888774 789999999999999 998 773 12233 39
Q ss_pred CEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccC
Q 039257 139 QLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 139 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~ 197 (210)
+.|.+++|.++++ .++.+|.+|+.||++.| .+..... ..++.+..|+.|.+.||++.
T Consensus 235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999999888 67889999999999999 6544322 22677888999999999874
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.31 E-value=1.2e-07 Score=78.06 Aligned_cols=108 Identities=27% Similarity=0.438 Sum_probs=79.9
Q ss_pred ccCCCCccEEEeecccccccCC-CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 62 VKEWENVRRLSLMQNQIETLSE-VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
+..+.++..+++.+|.++.+.. ...+++|+.|+++ .+.++.+.. +..+..|+.|++.+| .++ +. .+..+..|+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls-~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLS-FNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLK 165 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecc-ccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhh
Confidence 4556778888888888888777 5778888888888 888888777 567777888888888 777 54 344577888
Q ss_pred EEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCC
Q 039257 140 LLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKI 175 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~l 175 (210)
.+++++|.+..+... ...+.+++.+.+.+| .+..+
T Consensus 166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i 201 (414)
T KOG0531|consen 166 LLDLSYNRIVDIENDELSELISLEELDLGGN-SIREI 201 (414)
T ss_pred cccCCcchhhhhhhhhhhhccchHHHhccCC-chhcc
Confidence 888888887766542 456677777777777 44433
No 44
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.3e-07 Score=75.81 Aligned_cols=61 Identities=28% Similarity=0.332 Sum_probs=33.5
Q ss_pred CCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc-cc-----ccCCCCCCeEEeecccc
Q 039257 135 LGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR-QL-----ISNFSRLRGLRKFITCA 196 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~-~~-----~~~l~~L~~L~l~~~~~ 196 (210)
+..|+.|++++|++..++ ...+.++.|+.|+++.| .+.++.. .+ ...+++|+.|++..|++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 345566666666555444 34566666666666666 4444321 00 12456677777766666
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=1.7e-07 Score=77.18 Aligned_cols=144 Identities=26% Similarity=0.299 Sum_probs=106.2
Q ss_pred EEEecCCCCccCCC-ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 48 FLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 48 ~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
.+...++.+..+.. ...+.+++.|++++|.|+.+.....+..|+.|++. +|.+..+.. +..+..|+.+++++| .+
T Consensus 99 ~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~-~N~i~~~~~--~~~l~~L~~l~l~~n-~i 174 (414)
T KOG0531|consen 99 ALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS-GNLISDISG--LESLKSLKLLDLSYN-RI 174 (414)
T ss_pred eeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec-cCcchhccC--CccchhhhcccCCcc-hh
Confidence 44566788888888 78889999999999999998888888889999999 999998887 677999999999999 88
Q ss_pred e-eccc-ccCCCcCCEEeccCCcCcccch---------------------hhhcCCC--CcEEEccCCCCCCCCCccccc
Q 039257 127 K-FLVG-MSKLGSLQLLDISQNAIEELPE---------------------ELKLLIN--LTCLNLRGTGQLNKIPRQLIS 181 (210)
Q Consensus 127 ~-l~~~-~~~l~~L~~L~l~~~~l~~lp~---------------------~~~~l~~--L~~L~l~~~~~~~~lp~~~~~ 181 (210)
. +... ...+..++.+.+.+|.+..+.. ++..+.. |+.+++.+| .+...+.. +.
T Consensus 175 ~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n-~i~~~~~~-~~ 252 (414)
T KOG0531|consen 175 VDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGN-RISRSPEG-LE 252 (414)
T ss_pred hhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccC-cccccccc-cc
Confidence 8 6542 4677788888888887664421 0111111 556666666 55555332 55
Q ss_pred CCCCCCeEEeeccccC
Q 039257 182 NFSRLRGLRKFITCAS 197 (210)
Q Consensus 182 ~l~~L~~L~l~~~~~~ 197 (210)
.++.+..+++..|.+.
T Consensus 253 ~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 253 NLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccccccchhhcccc
Confidence 6666777777666654
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=1.1e-05 Score=65.45 Aligned_cols=57 Identities=16% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
..++.|++++|.++.+|.. .++|++|.+.+++.++.+|.. + ..+|+.|.+++|..+.
T Consensus 52 ~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 52 RASGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred cCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccc
Confidence 4455555555555555421 123555555544444444432 1 1345555555553333
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=8.3e-07 Score=71.26 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=38.5
Q ss_pred CCCCcEEecCCcccee-ec--ccccCCCcCCEEeccCCcCccc--chh-----hhcCCCCcEEEccCCCCCCCCCc-ccc
Q 039257 112 MPSLKVLKMSNCWNLK-FL--VGMSKLGSLQLLDISQNAIEEL--PEE-----LKLLINLTCLNLRGTGQLNKIPR-QLI 180 (210)
Q Consensus 112 l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~~L~l~~~~l~~l--p~~-----~~~l~~L~~L~l~~~~~~~~lp~-~~~ 180 (210)
+..|+.|++++| .+- .+ ...+.++.|..|+++.|.+..+ |+. ....++|++|++..| .+..++. +-+
T Consensus 245 ~~~L~~LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l 322 (505)
T KOG3207|consen 245 LQTLQELDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHL 322 (505)
T ss_pred hhHHhhccccCC-cccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchh
Confidence 334455555555 333 32 3344555555555555554422 221 234455566666555 4444432 002
Q ss_pred cCCCCCCeEEeeccccC
Q 039257 181 SNFSRLRGLRKFITCAS 197 (210)
Q Consensus 181 ~~l~~L~~L~l~~~~~~ 197 (210)
..+++|+.+.+..|.+.
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 33444555555555443
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=1.6e-06 Score=75.27 Aligned_cols=128 Identities=20% Similarity=0.248 Sum_probs=88.1
Q ss_pred CCccEEEeecccccc--cCC--CCCCCCccEEEcccCCCCccc-chhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 66 ENVRRLSLMQNQIET--LSE--VPTCPHFVTLFLDFNGELKMI-ADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~--l~~--~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
.+|+.|++++...-. .+. ..-+|.|++|.+. +..+..- -...+.++++|..||++++ +++ + .+++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~-~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVIS-GRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEec-CceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHH
Confidence 467778877754321 111 1568999999998 5444321 1233678999999999999 988 7 5788999999
Q ss_pred EEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---c---cccCCCCCCeEEeeccccC
Q 039257 140 LLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---Q---LISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 140 ~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~---~~~~l~~L~~L~l~~~~~~ 197 (210)
.|.+.+=.+..-. ..+.+|++|++||++... -...+. . .-..+++||.||.+++.+.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~-~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK-NNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc-cccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988876655332 466899999999999873 333321 0 0235889999999877653
No 49
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=6.1e-06 Score=60.03 Aligned_cols=100 Identities=23% Similarity=0.378 Sum_probs=83.2
Q ss_pred CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec--ccccCCCcCCEEec
Q 039257 67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL--VGMSKLGSLQLLDI 143 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~~L~l 143 (210)
....+++++|.+..++....++.|.+|.+. .|.++.+.+..-.-+++|..|.+.+| .+. +. ..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~-nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLN-NNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEec-CCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 355789999999888888899999999999 99999999885566788999999999 887 53 44567889999999
Q ss_pred cCCcCcccc----hhhhcCCCCcEEEccC
Q 039257 144 SQNAIEELP----EELKLLINLTCLNLRG 168 (210)
Q Consensus 144 ~~~~l~~lp----~~~~~l~~L~~L~l~~ 168 (210)
-+|++++.. --+..+++|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 999888654 2467899999999765
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=5.1e-06 Score=72.21 Aligned_cols=109 Identities=21% Similarity=0.212 Sum_probs=80.3
Q ss_pred CCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee---ecccccCCCcCCEEeccCCcCcccchhhhcCCCCc
Q 039257 87 CPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT 162 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 162 (210)
-.+|+.|+++|...+. ..+.....-+|+|+.|.+.+- .+. +..-..++++|..||+++++++.+ .++++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 4578899998544333 334443456899999999887 554 334445789999999999999988 7899999999
Q ss_pred EEEccCCCCCCCCC-cccccCCCCCCeEEeeccccCC
Q 039257 163 CLNLRGTGQLNKIP-RQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 163 ~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
.|.+++= .+.... -..+.+|++|++||+|......
T Consensus 199 ~L~mrnL-e~e~~~~l~~LF~L~~L~vLDIS~~~~~~ 234 (699)
T KOG3665|consen 199 VLSMRNL-EFESYQDLIDLFNLKKLRVLDISRDKNND 234 (699)
T ss_pred HHhccCC-CCCchhhHHHHhcccCCCeeecccccccc
Confidence 9988765 333322 1127889999999998887643
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.87 E-value=1.1e-06 Score=60.15 Aligned_cols=86 Identities=26% Similarity=0.351 Sum_probs=75.1
Q ss_pred CccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEec
Q 039257 67 NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDI 143 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l 143 (210)
.+...++++|.+..+|.. ..++.+++++++ ++.+.++|.+ +..++.|+.++++.| .+. .|.-+-.+.++.+|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~-~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLA-NNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcc-hhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 566778999998887766 566789999999 9999999999 899999999999999 998 8888888999999999
Q ss_pred cCCcCcccchhh
Q 039257 144 SQNAIEELPEEL 155 (210)
Q Consensus 144 ~~~~l~~lp~~~ 155 (210)
.+|.+.++|...
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999888888654
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.45 E-value=0.00027 Score=57.59 Aligned_cols=98 Identities=17% Similarity=0.365 Sum_probs=65.2
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCC-cCcccchhhhcCCCCc
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQN-AIEELPEELKLLINLT 162 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~ 162 (210)
..+.+++.|+++ .+.++.+|. + ..+|+.|.++++..++ +|+.+. .+|++|.+++| .+..+|+. |+
T Consensus 49 ~~~~~l~~L~Is-~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le 115 (426)
T PRK15386 49 EEARASGRLYIK-DCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VR 115 (426)
T ss_pred HHhcCCCEEEeC-CCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cc
Confidence 346889999999 778888873 2 3469999999876777 786553 57899999988 67677654 33
Q ss_pred EEEccCC--CCCCCCCcccccCC------------------CCCCeEEeecccc
Q 039257 163 CLNLRGT--GQLNKIPRQLISNF------------------SRLRGLRKFITCA 196 (210)
Q Consensus 163 ~L~l~~~--~~~~~lp~~~~~~l------------------~~L~~L~l~~~~~ 196 (210)
.|++..+ ..+..+|.+ +..| ++|++|++++|..
T Consensus 116 ~L~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred eEEeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCc
Confidence 3444332 124455543 3222 3677888877665
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.40 E-value=6.6e-05 Score=58.96 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=76.7
Q ss_pred CCccEEEeecccccccCCC------CCCCCccEEEcccCCCCcc----cchhHhcCCCCCcEEecCCcccee------ec
Q 039257 66 ENVRRLSLMQNQIETLSEV------PTCPHFVTLFLDFNGELKM----IADGFFQLMPSLKVLKMSNCWNLK------FL 129 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~------~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~------l~ 129 (210)
.+||.+....|.+..-+.. ...+.|..+.++ .+.+.. +-...|..+++|++||+.+| .++ +.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~-qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~La 234 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS-QNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALA 234 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEe-cccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHH
Confidence 4677777777765542211 344667777776 555542 11222667778888888887 665 23
Q ss_pred ccccCCCcCCEEeccCCcCcc-----cchhh-hcCCCCcEEEccCCCCCCCCCc----ccccCCCCCCeEEeecccc
Q 039257 130 VGMSKLGSLQLLDISQNAIEE-----LPEEL-KLLINLTCLNLRGTGQLNKIPR----QLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~l~~-----lp~~~-~~l~~L~~L~l~~~~~~~~lp~----~~~~~l~~L~~L~l~~~~~ 196 (210)
+.++.+++|+.|+++.|.++. +.+.+ ...++|+.|.+.+| .++.--. ..+...+.|+.|++.+|.+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 566667778888888776652 11222 23577888888777 4432110 0134567788888888877
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.38 E-value=6.1e-05 Score=59.16 Aligned_cols=128 Identities=23% Similarity=0.303 Sum_probs=68.5
Q ss_pred CCccEEEeecccccc--cCCC----CCCCCccEEEcccCCCCcccchhH-------------hcCCCCCcEEecCCccce
Q 039257 66 ENVRRLSLMQNQIET--LSEV----PTCPHFVTLFLDFNGELKMIADGF-------------FQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~--l~~~----~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~ 126 (210)
++++.+++++|.+.. ++.. ..+..|+.|.+. ++.+....... ...-+.||+++.++| ++
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~-N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rl 169 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN-NCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RL 169 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhh-cCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cc
Confidence 478888888886532 2221 446667777777 66554322221 123456777777777 55
Q ss_pred e-e-----cccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc----ccccCCCCCCeEEe
Q 039257 127 K-F-----LVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR----QLISNFSRLRGLRK 191 (210)
Q Consensus 127 ~-l-----~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~----~~~~~l~~L~~L~l 191 (210)
. - ...+...+.|+.+.+..|.|.. +-..+..+++|+.||+++| .++.-.. ..+..+++|+.+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchheeecc
Confidence 4 2 2334445566666666665441 1123456666666666666 3322111 11344556666666
Q ss_pred ecccc
Q 039257 192 FITCA 196 (210)
Q Consensus 192 ~~~~~ 196 (210)
..|.+
T Consensus 249 ~dcll 253 (382)
T KOG1909|consen 249 GDCLL 253 (382)
T ss_pred ccccc
Confidence 55554
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.8e-06 Score=63.01 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=24.5
Q ss_pred CCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCc
Q 039257 87 CPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNC 123 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 123 (210)
-..|+.+++++++.++..... .+..+..|..|++++|
T Consensus 233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc 270 (419)
T KOG2120|consen 233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC 270 (419)
T ss_pred cccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence 356777777766666654432 2567777888888877
No 56
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=8.4e-06 Score=62.27 Aligned_cols=99 Identities=24% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccch--hhhcCCCCcE
Q 039257 87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTC 163 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~ 163 (210)
+.+++.|+.- ++.+.+|.- ..+|+.|++|.|+-| .|+ +. .+..+.+|+.|.|+.|.|..+.+ -+.++++|+.
T Consensus 18 l~~vkKLNcw-g~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCW-GCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhccc-CCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 3444555555 555555543 456777777777777 666 42 24566677777777776665542 2356777777
Q ss_pred EEccCCCCCCCCCc----ccccCCCCCCeEE
Q 039257 164 LNLRGTGQLNKIPR----QLISNFSRLRGLR 190 (210)
Q Consensus 164 L~l~~~~~~~~lp~----~~~~~l~~L~~L~ 190 (210)
|.|..|+....-+. .++.-+++|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777654444333 2244566666665
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.36 E-value=0.00013 Score=55.13 Aligned_cols=101 Identities=24% Similarity=0.326 Sum_probs=58.5
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCC--CCc-ccchhHhcCCCCCcEEecCCcccee-ec--ccccCCCcCC
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNG--ELK-MIADGFFQLMPSLKVLKMSNCWNLK-FL--VGMSKLGSLQ 139 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-l~--~~~~~l~~L~ 139 (210)
..++.+++.+..++.+.....+++|+.|.++ .+ .+. .++.- ...+++|+++++++| ++. +. ..+..+.+|.
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~ls-dn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELS-DNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhccc-CCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 3556666666666666666667777777777 55 222 22222 344577777777777 666 32 3344556666
Q ss_pred EEeccCCcCcccc----hhhhcCCCCcEEEccCC
Q 039257 140 LLDISQNAIEELP----EELKLLINLTCLNLRGT 169 (210)
Q Consensus 140 ~L~l~~~~l~~lp----~~~~~l~~L~~L~l~~~ 169 (210)
.|++..|..+.+- ..+.-+++|++|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 7777776555432 12345566666654443
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00012 Score=55.39 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=67.9
Q ss_pred CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee----ecccccCCCcCCEEeccCCcCcccc--hhhhcCCC
Q 039257 87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK----FLVGMSKLGSLQLLDISQNAIEELP--EELKLLIN 160 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~ 160 (210)
+..|..+.+. +..++.+.. |..+++|+.|.++.| ... ++-....+++|+++++++|.+..+. +....+.+
T Consensus 42 ~~~le~ls~~-n~gltt~~~--~P~Lp~LkkL~lsdn-~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVI-NVGLTTLTN--FPKLPKLKKLELSDN-YRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhh-ccceeeccc--CCCcchhhhhcccCC-cccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3445555555 555555544 678899999999988 333 4433445699999999999877432 34467788
Q ss_pred CcEEEccCCCCCCCCCc---ccccCCCCCCeEEe
Q 039257 161 LTCLNLRGTGQLNKIPR---QLISNFSRLRGLRK 191 (210)
Q Consensus 161 L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l 191 (210)
|..|++.+| ..+.+.. .++.-+++|++|+-
T Consensus 118 L~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccC-CccccccHHHHHHHHhhhhccccc
Confidence 999999999 4444432 34566778887764
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.09 E-value=0.0038 Score=42.42 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=39.5
Q ss_pred CccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccceee-cccccCCCcCCEEec
Q 039257 67 NVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLKF-LVGMSKLGSLQLLDI 143 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l 143 (210)
+++.+.+.. .++.+... ..+.+++.+.+. .. +..++...|..+++++.+.+..+ ...+ ...+..+.+++.+.+
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~-~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFP-NN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEES-ST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccc-cc-ccccceeeeeccccccccccccc-cccccccccccccccccccc
Confidence 445555443 33333332 444456666655 32 55555554555555666666443 2223 234444555666655
Q ss_pred cCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCC
Q 039257 144 SQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL 186 (210)
Q Consensus 144 ~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L 186 (210)
..+ +..++. .+.+. .++.+.+.. .+..++...|.+.++|
T Consensus 89 ~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 89 PSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred Ccc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 443 333332 22333 555555443 2344444444444443
No 60
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=9.4e-05 Score=56.70 Aligned_cols=94 Identities=23% Similarity=0.348 Sum_probs=69.2
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCccce
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~ 126 (210)
-+.|.+.++.++.-...++.++.|.++-|+|..+.....+..|+.|++. .|.+..+..- .+.++++|+.|.+..|+..
T Consensus 23 KLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLR-kN~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 23 KLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLR-KNCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred hhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHH-hcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4567777777777777788899999999999888777888899999998 8888876642 2578889999988887433
Q ss_pred e-ecc-----cccCCCcCCEEe
Q 039257 127 K-FLV-----GMSKLGSLQLLD 142 (210)
Q Consensus 127 ~-l~~-----~~~~l~~L~~L~ 142 (210)
. -+. -+.-+++|+.||
T Consensus 102 ~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 102 GEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cccchhHHHHHHHHcccchhcc
Confidence 2 221 234466777665
No 61
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00018 Score=55.75 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=32.3
Q ss_pred cCCCcCCEEeccCC-cCc-ccchhhhcCCCCcEEEccCCCCCCCCCccc---ccCCCCCCeEEeeccc
Q 039257 133 SKLGSLQLLDISQN-AIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQL---ISNFSRLRGLRKFITC 195 (210)
Q Consensus 133 ~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~---~~~l~~L~~L~l~~~~ 195 (210)
..+++|..||++.| .++ ..-..+.+++.|++|.++.|.. ++++. +..+++|.+|+++|+.
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEecccc
Confidence 34566666666665 233 1223445666677777766632 22211 3556667777776554
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.82 E-value=0.00054 Score=31.54 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=7.6
Q ss_pred CCEEeccCCcCcccchh
Q 039257 138 LQLLDISQNAIEELPEE 154 (210)
Q Consensus 138 L~~L~l~~~~l~~lp~~ 154 (210)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.50 E-value=0.012 Score=39.97 Aligned_cols=113 Identities=18% Similarity=0.306 Sum_probs=64.1
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCC
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINL 161 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L 161 (210)
..+.+|+.+.+. . .++.++...|..+..++.+.+..+ +. ++ ..+.+++.++.+.+.. .+..++. .+..++.+
T Consensus 9 ~~~~~l~~i~~~-~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFP-N-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEET-S-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred hCCCCCCEEEEC-C-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456688888886 4 577888877889989999998775 45 54 5677787899999865 5555553 44568899
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
+.+++..+ +..++...+.+. .|+.+.+.. ....++...|.+
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~ 124 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKN 124 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccc
Confidence 99998654 667777667776 899888754 335566677754
No 64
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.00099 Score=51.74 Aligned_cols=19 Identities=26% Similarity=0.273 Sum_probs=10.8
Q ss_pred ccCCCCCCeEEeeccccCC
Q 039257 180 ISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 180 ~~~l~~L~~L~l~~~~~~~ 198 (210)
+..+++|+.|.+.++++..
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HcCCchhheeeccCCcccc
Confidence 3455666666666665543
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.21 E-value=0.0032 Score=28.87 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=13.9
Q ss_pred CCcEEecCCcccee-ecccccC
Q 039257 114 SLKVLKMSNCWNLK-FLVGMSK 134 (210)
Q Consensus 114 ~L~~L~l~~~~~~~-l~~~~~~ 134 (210)
+|++|++++| .++ +|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677778887 777 7766554
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.0044 Score=48.26 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=40.9
Q ss_pred CCCCCccEEEcccCCCCcccch--hHhcCCCCCcEEecCCcccee-ecccc-cCCCcCCEEeccCCcCc--ccchhhhcC
Q 039257 85 PTCPHFVTLFLDFNGELKMIAD--GFFQLMPSLKVLKMSNCWNLK-FLVGM-SKLGSLQLLDISQNAIE--ELPEELKLL 158 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l~~L~~L~l~~~~l~--~lp~~~~~l 158 (210)
..+..++.+++. +|.+.+... ..+..+|.|++|+++.| .+. .-+.+ -.+.+|+.|-+.++.+. ...+....+
T Consensus 68 ~~~~~v~elDL~-~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 68 SSVTDVKELDLT-GNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred HHhhhhhhhhcc-cchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 344556666666 555553332 11455666666666666 544 11222 23455666666555433 233334455
Q ss_pred CCCcEEEccCC
Q 039257 159 INLTCLNLRGT 169 (210)
Q Consensus 159 ~~L~~L~l~~~ 169 (210)
+.++.|.++.|
T Consensus 146 P~vtelHmS~N 156 (418)
T KOG2982|consen 146 PKVTELHMSDN 156 (418)
T ss_pred hhhhhhhhccc
Confidence 55555555544
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.78 E-value=0.0067 Score=25.90 Aligned_cols=14 Identities=43% Similarity=0.684 Sum_probs=4.6
Q ss_pred CCEEeccCCcCccc
Q 039257 138 LQLLDISQNAIEEL 151 (210)
Q Consensus 138 L~~L~l~~~~l~~l 151 (210)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 34444444444333
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.24 E-value=0.05 Score=42.10 Aligned_cols=133 Identities=22% Similarity=0.230 Sum_probs=84.3
Q ss_pred ccCCCCccEEEeecccccc-cCCC-----CCCCCccEEEcccCCCCcccchhHhc-------------CCCCCcEEecCC
Q 039257 62 VKEWENVRRLSLMQNQIET-LSEV-----PTCPHFVTLFLDFNGELKMIADGFFQ-------------LMPSLKVLKMSN 122 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~-l~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~-------------~l~~L~~L~l~~ 122 (210)
...+++++..++++|.+.. .+.. .....|..|.++ +|.+..+....++ .-+.|++.+..+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3455788899999997753 2211 566788888898 7777654432222 456788888888
Q ss_pred cccee-eccc-----ccCCCcCCEEeccCCcCccc--c----hhhhcCCCCcEEEccCCCCCCCCCcc----cccCCCCC
Q 039257 123 CWNLK-FLVG-----MSKLGSLQLLDISQNAIEEL--P----EELKLLINLTCLNLRGTGQLNKIPRQ----LISNFSRL 186 (210)
Q Consensus 123 ~~~~~-l~~~-----~~~l~~L~~L~l~~~~l~~l--p----~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~~l~~L 186 (210)
| ++. .|.. +..-.+|+.+.+..|.|..= . .+...+.+|+.||++.| ..+...+. .+..++.|
T Consensus 167 N-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 N-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred c-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchh
Confidence 8 776 4422 22234678888888876621 0 23356678888888888 55433221 23456677
Q ss_pred CeEEeeccccC
Q 039257 187 RGLRKFITCAS 197 (210)
Q Consensus 187 ~~L~l~~~~~~ 197 (210)
+.|.+-.|.++
T Consensus 245 rEL~lnDClls 255 (388)
T COG5238 245 RELRLNDCLLS 255 (388)
T ss_pred hhccccchhhc
Confidence 88887666654
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.70 E-value=0.00069 Score=50.80 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=43.4
Q ss_pred CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEE
Q 039257 87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLN 165 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~ 165 (210)
+...+.|+++ .+.+-.+... |+.+..+..|+++.+ .+. +|+.++....+..+++..|..+..|.+.+.++++++++
T Consensus 41 ~kr~tvld~~-s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLS-SNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhh-hhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 3445555555 4444444433 444445555555555 555 55555555555555555555555565555566666555
Q ss_pred ccCC
Q 039257 166 LRGT 169 (210)
Q Consensus 166 l~~~ 169 (210)
+-++
T Consensus 118 ~k~~ 121 (326)
T KOG0473|consen 118 QKKT 121 (326)
T ss_pred hccC
Confidence 5555
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.05 E-value=0.057 Score=25.59 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=8.2
Q ss_pred cCCEEeccCCcCcccch
Q 039257 137 SLQLLDISQNAIEELPE 153 (210)
Q Consensus 137 ~L~~L~l~~~~l~~lp~ 153 (210)
+|++|++++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44445555554444443
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.05 E-value=0.057 Score=25.59 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=8.2
Q ss_pred cCCEEeccCCcCcccch
Q 039257 137 SLQLLDISQNAIEELPE 153 (210)
Q Consensus 137 ~L~~L~l~~~~l~~lp~ 153 (210)
+|++|++++|.++.+|.
T Consensus 3 ~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 3 NLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCEEECCCCcCCcCCH
Confidence 44445555554444443
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.79 E-value=0.062 Score=25.46 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=11.3
Q ss_pred CCCcEEEccCCCCCCCCCcc
Q 039257 159 INLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~ 178 (210)
++|+.|++.+| .++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45566666666 56666554
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.79 E-value=0.062 Score=25.46 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=11.3
Q ss_pred CCCcEEEccCCCCCCCCCcc
Q 039257 159 INLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~ 178 (210)
++|+.|++.+| .++.+|..
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45566666666 56666554
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=92.15 E-value=0.13 Score=42.00 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=15.7
Q ss_pred CCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 159 INLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 159 ~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
..+..+.+.+|+.+.+--.+.+...++|+-+++.+++..
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 344444444443332222122333444444444444443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=0.021 Score=42.00 Aligned_cols=80 Identities=24% Similarity=0.202 Sum_probs=48.4
Q ss_pred CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--eccccc-CCCcCCEEeccCC-cCcccc-hhhhcCCCCcE
Q 039257 89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMS-KLGSLQLLDISQN-AIEELP-EELKLLINLTC 163 (210)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~-~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~ 163 (210)
.++.++-+ +..+....-.-+.+++.++.|.+.+|..+. --+.++ -.++|+.|++++| +|++-- ..+..+++|+.
T Consensus 102 ~IeaVDAs-ds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDAS-DSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecC-CchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45667776 665654443336677777888887774444 112233 3467888888887 566321 34566777777
Q ss_pred EEccCC
Q 039257 164 LNLRGT 169 (210)
Q Consensus 164 L~l~~~ 169 (210)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766554
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.18 E-value=0.057 Score=39.78 Aligned_cols=60 Identities=23% Similarity=0.186 Sum_probs=26.8
Q ss_pred CCCCCccEEEcccCCCCcccchhHhc-CCCCCcEEecCCcccee-e-cccccCCCcCCEEecc
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQ-LMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDIS 144 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~ 144 (210)
..+..++.|.+..+..+.+..-+.+. ..++|+.|++++|++|+ - -..+..+++|+.|.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 44455555555533333322211121 23556666666665555 2 1344445555555444
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.18 E-value=0.003 Score=47.50 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=61.2
Q ss_pred CccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcC
Q 039257 61 DVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSL 138 (210)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L 138 (210)
++..+...+.|+++.+..-.+-.. .-+..+..++++ .+.+..+|.+ +.....++.+++..| ..+ .|.+++..+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~s-knq~~~~~~d-~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLS-KNQIKFLPKD-AKQQRETVNAASHKN-NHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhcc-HhhHhhChhh-HHHHHHHHHHHhhcc-chhhCCccccccCCc
Confidence 344556677777777765543322 334556677887 7777777877 677777777888888 888 88888888888
Q ss_pred CEEeccCCcCc
Q 039257 139 QLLDISQNAIE 149 (210)
Q Consensus 139 ~~L~l~~~~l~ 149 (210)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 88888887654
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.32 E-value=0.17 Score=41.39 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=72.4
Q ss_pred CCCCCccEEEcccCCCCcccch-hHhcCCCCCcEEecCCcccee-ec-ccc-cCCCcCCEEeccCCcCc---ccchhhhc
Q 039257 85 PTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNCWNLK-FL-VGM-SKLGSLQLLDISQNAIE---ELPEELKL 157 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-l~-~~~-~~l~~L~~L~l~~~~l~---~lp~~~~~ 157 (210)
..+..|+.+..+++.++++.+- ..-.+..+|+++.++++..++ .. ..+ .+.++|+.+++.++... ++-.--.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 4567778888876666664432 223567888888888885555 21 222 35678888888887432 12222257
Q ss_pred CCCCcEEEccCCCCCCCC-----CcccccCCCCCCeEEeeccccCC
Q 039257 158 LINLTCLNLRGTGQLNKI-----PRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 158 l~~L~~L~l~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
++.|+.+.+++|+.+++- ... -..+..|..+.+.+++...
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~-~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSS-SCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhc-cccccccceeeecCCCCch
Confidence 788999999988665544 221 3456778888888887743
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.07 E-value=0.33 Score=23.13 Aligned_cols=17 Identities=47% Similarity=0.761 Sum_probs=9.7
Q ss_pred cCCEEeccCCcCcccch
Q 039257 137 SLQLLDISQNAIEELPE 153 (210)
Q Consensus 137 ~L~~L~l~~~~l~~lp~ 153 (210)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45556666666655553
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=86.82 E-value=1 Score=35.19 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=84.1
Q ss_pred CCCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcc----cch------hHhcCCCCCcEEecCCcccee-
Q 039257 65 WENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKM----IAD------GFFQLMPSLKVLKMSNCWNLK- 127 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~----~~~------~~~~~l~~L~~L~l~~~~~~~- 127 (210)
+..+..+++++|.+.. +... ..-.+|+..+++ ...... ++. ..+-+++.|+..++++| -+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs-d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS-DAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh-hhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCc
Confidence 4578889999997753 1111 334677777777 443332 221 11557899999999999 777
Q ss_pred -eccc----ccCCCcCCEEeccCCcCcccch--------------hhhcCCCCcEEEccCCCCCCCCCccc----ccCCC
Q 039257 128 -FLVG----MSKLGSLQLLDISQNAIEELPE--------------ELKLLINLTCLNLRGTGQLNKIPRQL----ISNFS 184 (210)
Q Consensus 128 -l~~~----~~~l~~L~~L~l~~~~l~~lp~--------------~~~~l~~L~~L~l~~~~~~~~lp~~~----~~~l~ 184 (210)
.|+. +.....|.+|.+.+|.+-.+.. ....-+.|+......| .+...|... +..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCcHHHHHHHHHhhc
Confidence 5544 3455678999999887664431 1234577888888888 777666531 22335
Q ss_pred CCCeEEeecccc
Q 039257 185 RLRGLRKFITCA 196 (210)
Q Consensus 185 ~L~~L~l~~~~~ 196 (210)
.|+.+.+..|-+
T Consensus 186 ~lk~vki~qNgI 197 (388)
T COG5238 186 NLKEVKIQQNGI 197 (388)
T ss_pred CceeEEeeecCc
Confidence 788888877765
No 81
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=83.37 E-value=0.77 Score=38.31 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=49.3
Q ss_pred CCCccEEEcccCCCCcc--cchhHhcCCCCCcEEecCCc-ccee-ec----ccccCCCcCCEEeccCCc-Ccccc-hhh-
Q 039257 87 CPHFVTLFLDFNGELKM--IADGFFQLMPSLKVLKMSNC-WNLK-FL----VGMSKLGSLQLLDISQNA-IEELP-EEL- 155 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~-l~----~~~~~l~~L~~L~l~~~~-l~~lp-~~~- 155 (210)
++.|+.+.+.++..+.. +.+. ....+.|+.|+++++ ..+. .+ .....+.+|+.|+++++. ++..- ..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHH-HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 45555555554444443 2222 445666666666551 0111 11 122234556666666654 33211 111
Q ss_pred hcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccC
Q 039257 156 KLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 156 ~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~ 197 (210)
..+++|+.|.+.+|..+++-.- .+...++.|++|+++++...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2255666666555532322211 11234555666666655543
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=81.49 E-value=1.3 Score=36.88 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=40.1
Q ss_pred CCCCCccEEEccc-CCCCcccc---hhHhcCCCCCcEEecCCcccee-e-ccccc-CCCcCCEEeccCCc-Cc--ccchh
Q 039257 85 PTCPHFVTLFLDF-NGELKMIA---DGFFQLMPSLKVLKMSNCWNLK-F-LVGMS-KLGSLQLLDISQNA-IE--ELPEE 154 (210)
Q Consensus 85 ~~~~~L~~L~l~~-~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~-~l~~L~~L~l~~~~-l~--~lp~~ 154 (210)
..+++|+.|++.+ ...+...+ ......++.|+.++++++..++ . -..+. .+++|+.|.+.++. ++ .+-..
T Consensus 211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI 290 (482)
T ss_pred hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence 4456666666652 11111111 1113345566666666662144 1 11222 25566666655553 33 12122
Q ss_pred hhcCCCCcEEEccCCCCC
Q 039257 155 LKLLINLTCLNLRGTGQL 172 (210)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~ 172 (210)
...++.|++|+++.|..+
T Consensus 291 ~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhcCcccEEeeecCccc
Confidence 345556666666666443
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.95 E-value=1.9 Score=20.52 Aligned_cols=13 Identities=54% Similarity=0.739 Sum_probs=6.4
Q ss_pred cCCEEeccCCcCc
Q 039257 137 SLQLLDISQNAIE 149 (210)
Q Consensus 137 ~L~~L~l~~~~l~ 149 (210)
+|+.|+++.|.|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4455555555444
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.66 E-value=1.7 Score=20.40 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=5.4
Q ss_pred CCCcEEEccCC
Q 039257 159 INLTCLNLRGT 169 (210)
Q Consensus 159 ~~L~~L~l~~~ 169 (210)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555555
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.25 E-value=1.5 Score=20.06 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=6.4
Q ss_pred CcCCEEeccCCcCc
Q 039257 136 GSLQLLDISQNAIE 149 (210)
Q Consensus 136 ~~L~~L~l~~~~l~ 149 (210)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555666555544
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.76 E-value=6 Score=18.94 Aligned_cols=13 Identities=46% Similarity=0.634 Sum_probs=7.4
Q ss_pred cCCEEeccCCcCc
Q 039257 137 SLQLLDISQNAIE 149 (210)
Q Consensus 137 ~L~~L~l~~~~l~ 149 (210)
+|++|++++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666544
No 87
>PF14162 YozD: YozD-like protein
Probab=56.43 E-value=7.4 Score=21.75 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.3
Q ss_pred ChHhhHHHHHhHhcccee
Q 039257 1 NRGYYIVGTLVHVCLLEE 18 (210)
Q Consensus 1 ~~~~~~~~~L~~~~l~~~ 18 (210)
++|+-++.+|+.||++..
T Consensus 12 EIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHccCCCc
Confidence 368889999999999875
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=56.31 E-value=8.8 Score=32.93 Aligned_cols=61 Identities=28% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCCCCcEEecCCcccee-ec--ccc-cCCCcCCEEeccCC--cCcccchhhh--cCCCCcEEEccCCCCCC
Q 039257 111 LMPSLKVLKMSNCWNLK-FL--VGM-SKLGSLQLLDISQN--AIEELPEELK--LLINLTCLNLRGTGQLN 173 (210)
Q Consensus 111 ~l~~L~~L~l~~~~~~~-l~--~~~-~~l~~L~~L~l~~~--~l~~lp~~~~--~l~~L~~L~l~~~~~~~ 173 (210)
+.+.+..+.+++| ++. +. .++ ...+.|.+|+|++| .++..+ ++. +...|+.|-+.+|+..+
T Consensus 216 n~p~i~sl~lsnN-rL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNN-RLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccc-hhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcccc
Confidence 4455555666666 554 32 112 22455666666665 222211 111 22335556666664333
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=45.20 E-value=16 Score=17.19 Aligned_cols=23 Identities=26% Similarity=0.164 Sum_probs=12.5
Q ss_pred CCCeEEeeccccCCCcchhhhhhccC
Q 039257 185 RLRGLRKFITCASSQLKVSTWENLLS 210 (210)
Q Consensus 185 ~L~~L~l~~~~~~~~~~~~~f~~l~~ 210 (210)
+|++|++....+ .....|.+|+|
T Consensus 1 sLKtL~L~~v~f---~~~~~l~~LlS 23 (26)
T PF07723_consen 1 SLKTLHLDSVVF---SDEDSLERLLS 23 (26)
T ss_pred CCeEEEeeEEEE---CChhHHHHhhc
Confidence 366777765554 22235666654
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.55 E-value=21 Score=30.76 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=33.9
Q ss_pred CCCCCccEEEcccCCCCcccch--hHhcCCCCCcEEecCCcccee--ecccccCC--CcCCEEeccCCcCc
Q 039257 85 PTCPHFVTLFLDFNGELKMIAD--GFFQLMPSLKVLKMSNCWNLK--FLVGMSKL--GSLQLLDISQNAIE 149 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l--~~L~~L~l~~~~l~ 149 (210)
...+.+..+.++ +|.+.++.. ..-+..++|..|+|++| ... ...++.++ .-|++|-+.||++.
T Consensus 215 ~n~p~i~sl~ls-nNrL~~Ld~~sslsq~apklk~L~LS~N-~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLS-NNRLYHLDALSSLSQIAPKLKTLDLSHN-HSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecc-cchhhchhhhhHHHHhcchhheeecccc-hhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 445566666666 666655443 22345566777777776 222 22233322 33666777777654
No 91
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=34.34 E-value=1e+02 Score=19.91 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=24.9
Q ss_pred hHhhHHHHHhHhccceecCCC---eeEehHHHHHHHH
Q 039257 2 RGYYIVGTLVHVCLLEEIEDD---KVKMLDVVRDMAL 35 (210)
Q Consensus 2 ~~~~~~~~L~~~~l~~~~~~~---~~~~hd~~~~~~~ 35 (210)
.|..|++.|++++++...+.. .+.+=+--.++..
T Consensus 47 ~~~~yi~~L~~~Gli~~~~~~~~~~y~lT~KG~~fle 83 (95)
T COG3432 47 RAQKYIEMLVEKGLIIKQDNGRRKVYELTEKGKRFLE 83 (95)
T ss_pred HHHHHHHHHHhCCCEEeccCCccceEEEChhHHHHHH
Confidence 588999999999977775543 6777765555543
No 92
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=31.27 E-value=1.7e+02 Score=19.88 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=38.9
Q ss_pred ChHhhHHHHHhHhccceecCCCeeEe--------------hHHHHHHHHHHHhhhccccccEEEecCCCCccCCC
Q 039257 1 NRGYYIVGTLVHVCLLEEIEDDKVKM--------------LDVVRDMALWIACETEKEKINFLVCAGAGLEEAPD 61 (210)
Q Consensus 1 ~~~~~~~~~L~~~~l~~~~~~~~~~~--------------hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (210)
|.+.++...|++.+++.+....++-. ..+...+|+++.-+...+...|.+....+...+|.
T Consensus 44 DN~~~~vRALl~~grV~v~~eGRYLl~l~~~~s~~plr~kE~~ak~vA~~L~~rF~vea~yfSV~gs~~~D~IP~ 118 (132)
T PF14468_consen 44 DNQSEVVRALLQAGRVKVNKEGRYLLDLDLFDSDWPLRKKEAMAKHVAGWLRHRFGVEAGYFSVLGSQDYDGIPS 118 (132)
T ss_pred cCcCHHHHHHHHcCceeeccCceeeeecccccCCCchHHHHHHHHHHHHHHHHHhCcceeEEEecCCCCCCcCcc
Confidence 45678899999999999966444422 11344455555555555555666666677777774
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.94 E-value=55 Score=34.08 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=19.4
Q ss_pred cccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 95 LDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 95 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
|+ +|.+..++...|..+++|+.|+|++|
T Consensus 2 LS-nN~LstLp~g~F~~L~sL~~LdLsgN 29 (2740)
T TIGR00864 2 IS-NNKISTIEEGICANLCNLSEIDLSGN 29 (2740)
T ss_pred CC-CCcCCccChHHhccCCCceEEEeeCC
Confidence 45 66677777766777777777777776
No 94
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=22.15 E-value=1.9e+02 Score=17.44 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=25.1
Q ss_pred hHhhHHHHHhHhccceecCCCeeEehHHHHHHHHHH
Q 039257 2 RGYYIVGTLVHVCLLEEIEDDKVKMLDVVRDMALWI 37 (210)
Q Consensus 2 ~~~~~~~~L~~~~l~~~~~~~~~~~hd~~~~~~~~~ 37 (210)
.+..|+++|.+++++.. +...|.+=+--.++...+
T Consensus 35 ~~~~yL~~L~~~gLI~~-~~~~Y~lTekG~~~l~~l 69 (77)
T PF14947_consen 35 TLKKYLKELEEKGLIKK-KDGKYRLTEKGKEFLEEL 69 (77)
T ss_dssp HHHHHHHHHHHTTSEEE-ETTEEEE-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCeeC-CCCEEEECccHHHHHHHH
Confidence 46789999999999965 566777766655555433
No 95
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=21.64 E-value=1.3e+02 Score=15.55 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=14.8
Q ss_pred HhhHHHHHhHhccceecCCCeeEe
Q 039257 3 GYYIVGTLVHVCLLEEIEDDKVKM 26 (210)
Q Consensus 3 ~~~~~~~L~~~~l~~~~~~~~~~~ 26 (210)
...++..|.+.+++.... ..+.+
T Consensus 25 v~~~l~~L~~~g~l~~~~-~~~~i 47 (48)
T smart00419 25 VSRTLKRLEKEGLISREG-GRIVI 47 (48)
T ss_pred HHHHHHHHHHCCCEEEeC-CEEEE
Confidence 456777888888877644 44444
Done!