Query 039257
Match_columns 210
No_of_seqs 161 out of 1795
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 13:08:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.6E-23 130.6 16.3 150 48-201 23-176 (229)
2 3rfs_A Internalin B, repeat mo 99.8 2.1E-18 7.3E-23 132.6 15.4 146 49-197 46-194 (272)
3 3m19_A Variable lymphocyte rec 99.8 3.9E-18 1.3E-22 129.7 16.7 155 47-206 17-176 (251)
4 2o6q_A Variable lymphocyte rec 99.8 7.6E-18 2.6E-22 129.4 16.7 130 64-196 59-193 (270)
5 4fcg_A Uncharacterized protein 99.8 2.6E-18 8.8E-23 135.7 13.9 145 48-196 85-241 (328)
6 2v9t_B SLIT homolog 2 protein 99.8 6.2E-18 2.1E-22 126.2 15.2 150 47-200 14-168 (220)
7 2v70_A SLIT-2, SLIT homolog 2 99.8 9.4E-18 3.2E-22 125.2 14.8 153 47-203 14-172 (220)
8 2o6s_A Variable lymphocyte rec 99.8 1.7E-17 5.8E-22 122.6 16.1 151 47-201 10-165 (208)
9 4fcg_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 134.9 12.9 155 47-203 107-272 (328)
10 3rfs_A Internalin B, repeat mo 99.8 1.4E-17 4.6E-22 128.2 15.4 152 47-201 66-222 (272)
11 2o6q_A Variable lymphocyte rec 99.8 2.4E-17 8.3E-22 126.6 16.8 157 47-208 19-180 (270)
12 3m19_A Variable lymphocyte rec 99.8 1.8E-17 6.1E-22 126.0 15.8 149 48-199 39-194 (251)
13 4ezg_A Putative uncharacterize 99.8 7.3E-18 2.5E-22 123.7 13.2 144 48-197 48-194 (197)
14 4g8a_A TOLL-like receptor 4; l 99.8 7.5E-18 2.6E-22 143.0 15.0 155 47-207 34-195 (635)
15 2xot_A Amphoterin-induced prot 99.8 2.6E-17 8.7E-22 131.6 15.5 156 47-207 21-185 (361)
16 1p9a_G Platelet glycoprotein I 99.7 2.8E-17 9.4E-22 127.7 13.9 138 63-205 52-192 (290)
17 1p9a_G Platelet glycoprotein I 99.7 9.8E-17 3.3E-21 124.5 15.4 149 47-199 58-210 (290)
18 1h6u_A Internalin H; cell adhe 99.7 1.5E-16 5E-21 124.6 16.3 140 48-196 45-185 (308)
19 1ozn_A Reticulon 4 receptor; N 99.7 8.9E-17 3E-21 124.2 14.9 145 48-196 15-165 (285)
20 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.7E-21 125.3 14.9 145 47-200 66-211 (308)
21 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.8E-21 123.1 14.6 155 47-207 10-171 (276)
22 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.8E-21 123.7 14.6 130 65-197 79-214 (285)
23 3vq2_A TLR4, TOLL-like recepto 99.7 7E-17 2.4E-21 136.9 14.5 156 46-207 13-175 (606)
24 1h6t_A Internalin B; cell adhe 99.7 3.1E-16 1E-20 121.8 15.9 141 48-197 50-191 (291)
25 2xwt_C Thyrotropin receptor; s 99.7 7.4E-17 2.5E-21 121.6 11.5 136 56-196 23-168 (239)
26 2z63_A TOLL-like receptor 4, v 99.7 1.6E-16 5.4E-21 133.6 14.8 156 45-206 8-170 (570)
27 2v9t_B SLIT homolog 2 protein 99.7 1.7E-16 5.8E-21 118.4 13.3 135 69-208 14-151 (220)
28 3zyj_A Leucine-rich repeat-con 99.7 2E-16 7E-21 129.4 14.6 140 63-206 133-276 (440)
29 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.1E-21 117.2 11.8 131 63-199 41-174 (197)
30 1h6t_A Internalin B; cell adhe 99.7 2E-16 6.9E-21 122.8 13.5 143 47-198 71-214 (291)
31 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.6E-21 127.5 11.6 149 48-199 35-189 (353)
32 2xwt_C Thyrotropin receptor; s 99.7 6.9E-17 2.4E-21 121.8 10.0 142 48-194 35-189 (239)
33 1xeu_A Internalin C; cellular 99.7 3.9E-16 1.3E-20 119.5 13.9 143 47-199 44-187 (263)
34 3zyi_A Leucine-rich repeat-con 99.7 4.1E-16 1.4E-20 128.1 14.8 147 47-196 57-208 (452)
35 3zyi_A Leucine-rich repeat-con 99.7 5E-16 1.7E-20 127.5 15.1 152 50-206 105-287 (452)
36 3zyj_A Leucine-rich repeat-con 99.7 6.2E-16 2.1E-20 126.6 15.3 146 47-195 46-196 (440)
37 2id5_A Lingo-1, leucine rich r 99.7 5.8E-16 2E-20 127.8 15.2 156 46-206 13-173 (477)
38 3v47_A TOLL-like receptor 5B a 99.7 4.5E-16 1.5E-20 127.6 14.2 155 42-201 8-171 (455)
39 1xeu_A Internalin C; cellular 99.7 2.1E-16 7.3E-21 121.0 11.4 139 51-199 26-165 (263)
40 2z66_A Variable lymphocyte rec 99.7 3.8E-16 1.3E-20 121.8 12.6 146 48-198 11-164 (306)
41 1w8a_A SLIT protein; signaling 99.7 4.4E-16 1.5E-20 113.7 12.1 131 69-203 11-145 (192)
42 3j0a_A TOLL-like receptor 5; m 99.7 8.9E-16 3E-20 135.0 16.2 152 46-201 6-165 (844)
43 3e6j_A Variable lymphocyte rec 99.7 8.4E-16 2.9E-20 115.3 13.6 135 68-208 21-158 (229)
44 2z62_A TOLL-like receptor 4, v 99.7 3.6E-16 1.2E-20 120.3 11.6 127 48-177 32-166 (276)
45 3t6q_A CD180 antigen; protein- 99.7 7.9E-16 2.7E-20 130.4 14.7 157 46-207 14-175 (606)
46 2wfh_A SLIT homolog 2 protein 99.7 1.2E-15 4.3E-20 111.4 13.6 127 69-200 13-142 (193)
47 3o6n_A APL1; leucine-rich repe 99.7 5.7E-16 1.9E-20 124.8 12.9 140 64-207 43-187 (390)
48 1m9s_A Internalin B; cell inva 99.7 9.1E-16 3.1E-20 130.1 14.4 140 49-197 70-210 (605)
49 2z66_A Variable lymphocyte rec 99.7 6.5E-16 2.2E-20 120.5 12.5 148 49-199 83-238 (306)
50 1ziw_A TOLL-like receptor 3; i 99.7 1.3E-15 4.4E-20 130.8 15.4 150 46-199 6-160 (680)
51 2ell_A Acidic leucine-rich nuc 99.7 1.9E-16 6.6E-21 113.0 8.6 127 66-197 24-160 (168)
52 2v70_A SLIT-2, SLIT homolog 2 99.7 1.5E-15 5.1E-20 113.3 13.5 136 68-208 13-152 (220)
53 2o6r_A Variable lymphocyte rec 99.7 1.5E-15 5.2E-20 109.3 13.2 130 68-201 9-141 (177)
54 3v47_A TOLL-like receptor 5B a 99.7 1.2E-15 4E-20 125.1 13.4 134 66-202 275-413 (455)
55 1m9s_A Internalin B; cell inva 99.7 1.7E-15 5.7E-20 128.5 14.5 143 48-199 47-190 (605)
56 1a9n_A U2A', U2A'; complex (nu 99.7 2E-16 6.9E-21 113.9 7.7 129 63-196 16-152 (176)
57 2xot_A Amphoterin-induced prot 99.7 6.6E-16 2.3E-20 123.4 10.9 149 48-199 43-204 (361)
58 2z81_A CD282 antigen, TOLL-lik 99.7 6.4E-16 2.2E-20 129.5 11.2 150 49-201 10-165 (549)
59 2z80_A TOLL-like receptor 2, v 99.6 1E-15 3.5E-20 121.8 11.3 154 47-204 55-217 (353)
60 4fmz_A Internalin; leucine ric 99.6 6.1E-15 2.1E-19 116.8 15.5 142 48-197 48-190 (347)
61 3oja_B Anopheles plasmodium-re 99.6 1.5E-15 5.2E-20 128.8 12.6 140 64-207 49-193 (597)
62 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-15 4.2E-20 119.7 11.2 130 65-199 119-252 (317)
63 2o6s_A Variable lymphocyte rec 99.6 6E-15 2.1E-19 108.8 14.0 134 69-207 10-146 (208)
64 2id5_A Lingo-1, leucine rich r 99.6 2.3E-15 7.9E-20 124.2 12.9 146 48-196 36-188 (477)
65 4fmz_A Internalin; leucine ric 99.6 4.9E-15 1.7E-19 117.4 14.3 152 50-208 183-335 (347)
66 2z7x_B TOLL-like receptor 1, v 99.6 3E-15 1E-19 124.8 13.4 113 86-203 372-487 (520)
67 2je0_A Acidic leucine-rich nuc 99.6 4.2E-16 1.4E-20 109.1 6.9 122 66-192 17-148 (149)
68 4g8a_A TOLL-like receptor 4; l 99.6 4.3E-15 1.5E-19 126.0 14.0 134 70-207 35-171 (635)
69 4b8c_D Glucose-repressible alc 99.6 7.7E-16 2.6E-20 133.2 9.4 114 85-203 221-335 (727)
70 1o6v_A Internalin A; bacterial 99.6 1.1E-14 3.6E-19 120.1 15.3 143 50-201 227-370 (466)
71 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 6.5E-15 2.2E-19 124.0 14.3 139 62-205 373-518 (562)
72 3o6n_A APL1; leucine-rich repe 99.6 3.4E-15 1.2E-19 120.2 11.7 128 66-199 226-354 (390)
73 1xku_A Decorin; proteoglycan, 99.6 2.3E-14 7.9E-19 112.9 16.2 140 63-206 168-316 (330)
74 2z63_A TOLL-like receptor 4, v 99.6 4.8E-15 1.6E-19 124.6 12.8 153 49-204 378-538 (570)
75 4eco_A Uncharacterized protein 99.6 6.1E-15 2.1E-19 126.0 13.2 33 134-166 511-543 (636)
76 3vq2_A TLR4, TOLL-like recepto 99.6 2.8E-15 9.7E-20 127.0 10.9 155 47-205 35-201 (606)
77 2z7x_B TOLL-like receptor 1, v 99.6 9.4E-15 3.2E-19 121.8 13.6 141 47-196 3-150 (520)
78 1xku_A Decorin; proteoglycan, 99.6 2.9E-14 9.9E-19 112.3 15.6 102 49-152 57-187 (330)
79 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.4E-14 4.8E-19 121.9 14.6 141 47-196 34-181 (562)
80 1ogq_A PGIP-2, polygalacturona 99.6 3.8E-15 1.3E-19 116.7 10.4 150 48-202 105-286 (313)
81 3oja_A Leucine-rich immune mol 99.6 5.4E-15 1.8E-19 122.6 11.4 128 65-197 119-250 (487)
82 3t6q_A CD180 antigen; protein- 99.6 1.4E-14 4.7E-19 122.8 14.2 150 49-201 259-417 (606)
83 1o6v_A Internalin A; bacterial 99.6 2.3E-14 7.8E-19 118.1 14.9 138 51-197 184-322 (466)
84 3oja_B Anopheles plasmodium-re 99.6 6.8E-15 2.3E-19 124.8 11.4 128 66-199 232-360 (597)
85 3rgz_A Protein brassinosteroid 99.6 2.9E-14 9.9E-19 124.2 15.5 86 114-201 633-721 (768)
86 1ogq_A PGIP-2, polygalacturona 99.6 7.4E-15 2.5E-19 115.1 10.6 106 61-169 71-184 (313)
87 3bz5_A Internalin-J, INLJ; leu 99.6 4.8E-14 1.6E-18 116.0 15.4 138 48-198 46-184 (457)
88 3rgz_A Protein brassinosteroid 99.6 1.2E-14 4.1E-19 126.6 12.4 141 62-206 414-560 (768)
89 2ft3_A Biglycan; proteoglycan, 99.6 2.9E-14 1E-18 112.4 13.5 143 47-196 36-184 (332)
90 2ell_A Acidic leucine-rich nuc 99.6 2.3E-14 7.8E-19 102.2 11.6 129 47-178 27-165 (168)
91 1wwl_A Monocyte differentiatio 99.6 1.1E-14 3.6E-19 114.1 10.7 126 66-197 149-287 (312)
92 4ecn_A Leucine-rich repeat pro 99.6 1.7E-14 5.7E-19 126.7 13.1 32 135-166 752-783 (876)
93 4glp_A Monocyte differentiatio 99.6 1E-14 3.5E-19 114.0 10.5 128 65-198 144-286 (310)
94 3cvr_A Invasion plasmid antige 99.6 1.6E-14 5.5E-19 121.5 12.2 138 48-201 84-247 (571)
95 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.1E-19 115.0 10.9 157 48-208 13-225 (350)
96 2ft3_A Biglycan; proteoglycan, 99.6 3E-14 1E-18 112.4 12.3 134 67-206 34-170 (332)
97 1wwl_A Monocyte differentiatio 99.6 2.3E-14 7.9E-19 112.2 11.2 154 48-205 99-273 (312)
98 1ziw_A TOLL-like receptor 3; i 99.6 3E-14 1E-18 122.4 12.7 156 47-206 28-192 (680)
99 4eco_A Uncharacterized protein 99.6 9.2E-14 3.2E-18 118.7 15.3 151 48-202 381-560 (636)
100 1a9n_A U2A', U2A'; complex (nu 99.6 2.2E-14 7.4E-19 103.2 9.5 121 47-169 22-150 (176)
101 1dce_A Protein (RAB geranylger 99.6 2.3E-14 7.8E-19 120.8 11.0 106 89-201 442-550 (567)
102 4ecn_A Leucine-rich repeat pro 99.5 3.4E-14 1.2E-18 124.7 12.1 151 47-202 551-745 (876)
103 2wfh_A SLIT homolog 2 protein 99.5 8.3E-14 2.9E-18 101.7 12.3 121 47-170 13-137 (193)
104 3bz5_A Internalin-J, INLJ; leu 99.5 3.6E-14 1.2E-18 116.7 11.4 133 61-206 37-170 (457)
105 2z81_A CD282 antigen, TOLL-lik 99.5 7.3E-14 2.5E-18 117.0 13.0 133 71-208 10-147 (549)
106 2je0_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 99.5 9.1 110 86-201 15-130 (149)
107 4glp_A Monocyte differentiatio 99.5 6E-14 2E-18 109.7 11.6 157 47-208 94-274 (310)
108 3oja_A Leucine-rich immune mol 99.5 2E-14 7E-19 119.1 9.1 105 88-197 120-227 (487)
109 4b8c_D Glucose-repressible alc 99.5 1.4E-15 5E-20 131.5 1.5 111 62-176 220-332 (727)
110 1w8a_A SLIT protein; signaling 99.5 2E-13 6.9E-18 99.5 12.1 121 47-170 11-137 (192)
111 3o53_A Protein LRIM1, AGAP0063 99.5 3.6E-14 1.2E-18 111.3 8.6 148 49-202 63-231 (317)
112 2o6r_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 97.1 12.7 124 47-174 10-138 (177)
113 1dce_A Protein (RAB geranylger 99.5 1.1E-13 3.7E-18 116.6 10.7 120 67-191 442-567 (567)
114 2r9u_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 96.8 11.2 98 69-169 15-115 (174)
115 3j0a_A TOLL-like receptor 5; m 99.5 2.4E-13 8.3E-18 119.6 12.5 136 69-208 7-147 (844)
116 3g39_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 96.3 11.2 98 69-169 12-112 (170)
117 3cvr_A Invasion plasmid antige 99.5 6.6E-13 2.3E-17 111.7 14.5 131 47-197 62-193 (571)
118 3g06_A SSPH2 (leucine-rich rep 99.5 7E-13 2.4E-17 112.7 13.9 120 66-201 181-301 (622)
119 1jl5_A Outer protein YOPM; leu 99.5 1.6E-12 5.6E-17 106.7 15.0 119 67-197 112-250 (454)
120 1jl5_A Outer protein YOPM; leu 99.4 2.5E-12 8.6E-17 105.7 14.6 135 48-197 135-270 (454)
121 3g06_A SSPH2 (leucine-rich rep 99.4 3.7E-12 1.3E-16 108.3 15.9 116 46-177 42-158 (622)
122 2r9u_A Variable lymphocyte rec 99.4 1.7E-12 5.8E-17 93.2 10.8 101 91-197 15-118 (174)
123 3g39_A Variable lymphocyte rec 99.4 2.7E-12 9.4E-17 91.7 10.6 103 91-199 12-117 (170)
124 1ds9_A Outer arm dynein; leuci 99.4 5E-15 1.7E-19 108.5 -5.0 104 62-169 44-150 (198)
125 2ast_B S-phase kinase-associat 99.4 4.4E-13 1.5E-17 105.6 4.6 107 62-169 89-205 (336)
126 1ds9_A Outer arm dynein; leuci 99.3 1.5E-14 5.1E-19 106.0 -4.6 128 68-201 25-157 (198)
127 4ay9_X Follicle-stimulating ho 99.3 1.8E-11 6.2E-16 97.2 10.0 135 69-207 12-151 (350)
128 2ifg_A High affinity nerve gro 99.3 3.2E-11 1.1E-15 95.5 11.3 98 71-169 13-113 (347)
129 2ast_B S-phase kinase-associat 99.3 6.7E-12 2.3E-16 98.8 6.8 127 65-194 117-257 (336)
130 2ca6_A RAN GTPase-activating p 99.2 3.2E-12 1.1E-16 102.7 3.9 112 86-200 185-319 (386)
131 2ca6_A RAN GTPase-activating p 99.2 3.5E-12 1.2E-16 102.5 2.1 107 88-198 159-288 (386)
132 2ifg_A High affinity nerve gro 99.2 1.3E-10 4.3E-15 92.0 10.4 100 48-149 12-116 (347)
133 3goz_A Leucine-rich repeat-con 99.1 2.6E-11 8.7E-16 96.7 4.0 148 48-198 26-210 (362)
134 3goz_A Leucine-rich repeat-con 99.1 4.8E-11 1.6E-15 95.1 3.8 148 47-198 54-239 (362)
135 3sb4_A Hypothetical leucine ri 99.1 8.9E-10 3.1E-14 86.6 10.3 35 87-123 100-134 (329)
136 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.1E-14 85.9 9.9 92 112-208 225-320 (329)
137 1z7x_W Ribonuclease inhibitor; 99.0 1.2E-10 4E-15 95.4 1.6 128 64-196 225-410 (461)
138 3un9_A NLR family member X1; l 98.9 2.8E-10 9.7E-15 91.1 1.5 129 66-197 101-252 (372)
139 1z7x_W Ribonuclease inhibitor; 98.8 5E-10 1.7E-14 91.7 1.0 131 63-197 25-183 (461)
140 3un9_A NLR family member X1; l 98.7 4.1E-09 1.4E-13 84.4 1.6 129 66-197 72-224 (372)
141 3ogk_B Coronatine-insensitive 98.6 4.2E-08 1.4E-12 82.7 4.9 34 110-144 217-251 (592)
142 4fdw_A Leucine rich hypothetic 98.5 9.1E-07 3.1E-11 71.4 10.8 139 63-207 177-344 (401)
143 3ogk_B Coronatine-insensitive 98.4 3.1E-07 1.1E-11 77.4 6.2 103 65-169 191-303 (592)
144 2ra8_A Uncharacterized protein 98.4 4.6E-07 1.6E-11 72.1 6.2 129 64-196 170-319 (362)
145 2p1m_B Transport inhibitor res 98.4 1.1E-07 3.6E-12 80.2 2.1 37 157-194 287-324 (594)
146 2p1m_B Transport inhibitor res 98.3 1.1E-07 3.7E-12 80.2 1.4 127 65-194 104-245 (594)
147 1io0_A Tropomodulin; LRR prote 98.3 6.4E-07 2.2E-11 64.5 4.8 107 85-196 33-163 (185)
148 3e4g_A ATP synthase subunit S, 98.3 4.9E-07 1.7E-11 64.4 4.0 86 88-174 61-154 (176)
149 4fdw_A Leucine rich hypothetic 98.3 1E-05 3.5E-10 65.2 11.7 103 85-195 177-282 (401)
150 3e4g_A ATP synthase subunit S, 98.2 3.5E-06 1.2E-10 59.9 6.1 85 114-199 62-154 (176)
151 3rw6_A Nuclear RNA export fact 98.2 1.5E-06 5E-11 66.2 4.3 78 111-190 168-257 (267)
152 3rw6_A Nuclear RNA export fact 98.1 3.1E-06 1E-10 64.4 5.4 80 118-201 148-237 (267)
153 1io0_A Tropomodulin; LRR prote 98.0 5.6E-06 1.9E-10 59.5 5.0 102 66-169 36-161 (185)
154 2ra8_A Uncharacterized protein 97.7 4E-05 1.4E-09 60.9 5.8 126 65-195 192-341 (362)
155 4h09_A Hypothetical leucine ri 97.7 0.00041 1.4E-08 55.1 10.9 114 85-206 237-353 (379)
156 3rfe_A Platelet glycoprotein I 97.5 0.00022 7.6E-09 48.1 5.9 55 140-197 12-68 (130)
157 4gt6_A Cell surface protein; l 97.2 0.0036 1.2E-07 50.0 11.0 104 85-195 262-368 (394)
158 4fs7_A Uncharacterized protein 97.0 0.0096 3.3E-07 47.5 11.4 86 104-194 288-376 (394)
159 2a5y_B CED-4; apoptosis; HET: 97.0 0.0002 6.8E-09 60.1 1.4 38 5-42 432-472 (549)
160 4h09_A Hypothetical leucine ri 96.9 0.019 6.4E-07 45.5 12.5 115 85-207 214-331 (379)
161 4fs7_A Uncharacterized protein 96.8 0.0048 1.6E-07 49.3 8.3 37 155-193 158-194 (394)
162 4gt6_A Cell surface protein; l 96.8 0.0073 2.5E-07 48.2 9.2 102 101-208 253-356 (394)
163 3rfe_A Platelet glycoprotein I 96.4 0.0088 3E-07 40.1 5.9 34 89-123 32-65 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.0 0.053 1.8E-06 39.0 5.9 107 87-196 40-169 (197)
165 3sfz_A APAF-1, apoptotic pepti 94.4 0.025 8.5E-07 51.5 3.7 40 2-41 410-452 (1249)
166 1pgv_A TMD-1, tropomodulin TMD 93.0 0.19 6.4E-06 36.1 5.3 85 109-194 37-136 (197)
167 1vt4_I APAF-1 related killer D 88.6 0.19 6.5E-06 45.4 2.2 34 2-35 403-437 (1221)
168 1z6t_A APAF-1, apoptotic prote 86.9 0.37 1.3E-05 40.4 2.9 36 2-37 410-448 (591)
169 2lz0_A Uncharacterized protein 61.9 8.9 0.0003 23.9 3.5 43 101-145 8-52 (100)
170 2lz0_A Uncharacterized protein 56.5 18 0.00063 22.4 4.3 38 130-168 14-52 (100)
No 1
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=1.4e-18 Score=130.56 Aligned_cols=150 Identities=25% Similarity=0.305 Sum_probs=133.5
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.+.|.+..++.+|... .++++.|++++|.++.++.. ..+++|+.|+++ ++.+..++...|..+++|++|++++| .
T Consensus 23 ~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLGTN-Q 99 (229)
T ss_dssp EEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred EeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECCCC-c
Confidence 4778888888888633 37899999999999987443 788999999999 99999999887899999999999999 9
Q ss_pred ee-ec-ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 126 LK-FL-VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 126 ~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
++ ++ ..+..+++|++|++++|.++.+|..+..+++|++|++++| .+..+|...+..+++|+.|++++|++....+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 75 5578899999999999999999999999999999999999 8899987668999999999999999976654
No 2
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=2.1e-18 Score=132.65 Aligned_cols=146 Identities=24% Similarity=0.433 Sum_probs=89.3
Q ss_pred EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK- 127 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 127 (210)
+.+.+..+..++.+..+++++.|++++|.+..++....+++|++|+++ ++.++.+++..+..+++|++|++++| .++
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 123 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVEN-QLQS 123 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCC-cCCc
Confidence 445555666666666666677777776666665544566666666666 66666666554566666666666666 666
Q ss_pred ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
++ ..++.+++|++|++++|.++.+|.. ++.+++|+.|++++| .++.+|...++.+++|++|++++|.+.
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC
Confidence 43 3455666666666666666655543 355666666666666 555555544556666666666666654
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.80 E-value=3.9e-18 Score=129.67 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=98.7
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|..-. ..++.|++++|.+..++.. ..+++|++|+++ ++.++.+++..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n- 93 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN- 93 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhccCCcCCEEECCCC-
Confidence 456777777777775322 4677777777777665442 556677777777 66666666655666777777777777
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
.++ +| ..+..+++|++|++++|.++.+|.. +..+++|+.|++++| .++.+|...++.+++|++|++++|.+. .++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~ 171 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCC
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC-ccC
Confidence 666 53 4556666777777777766666544 356666777777766 666666544666666777777666663 334
Q ss_pred hhhhh
Q 039257 202 VSTWE 206 (210)
Q Consensus 202 ~~~f~ 206 (210)
+..|.
T Consensus 172 ~~~~~ 176 (251)
T 3m19_A 172 HGAFD 176 (251)
T ss_dssp TTTTT
T ss_pred HHHHh
Confidence 33333
No 4
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.6e-18 Score=129.38 Aligned_cols=130 Identities=23% Similarity=0.367 Sum_probs=66.6
Q ss_pred CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257 64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ 139 (210)
Q Consensus 64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~ 139 (210)
.+++++.|++.+|.++.++.. ..+++|++|+++ ++.+..++...|..+++|++|++++| .++ + +..+..+++|+
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 136 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLT 136 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCC
Confidence 334444444444444444332 334455555555 44455544443445555555555555 555 3 23344555555
Q ss_pred EEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 140 LLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
+|++++|.++.+|.. +..+++|+.|++++| .++.+|...+..+++|++|++++|.+
T Consensus 137 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 555555555555433 455555666666555 55555544355556666666665555
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=2.6e-18 Score=135.69 Aligned_cols=145 Identities=21% Similarity=0.294 Sum_probs=71.7
Q ss_pred EEEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 48 FLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 48 ~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.+.+.+..++.+|. +..++++++|++++|.+..+|.. ..+++|++|+++ ++.+..+|.. +..+++|++|++++|..
T Consensus 85 ~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls-~n~l~~lp~~-l~~l~~L~~L~L~~n~~ 162 (328)
T 4fcg_A 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLA-RNPLRALPAS-IASLNRLRELSIRACPE 162 (328)
T ss_dssp EEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEE-SCCCCCCCGG-GGGCTTCCEEEEEEETT
T ss_pred EEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECC-CCccccCcHH-HhcCcCCCEEECCCCCC
Confidence 34555666666654 44556666666666666655543 555666666666 5555555554 55555555555555412
Q ss_pred ee-ecccccC---------CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 126 LK-FLVGMSK---------LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 126 ~~-l~~~~~~---------l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
.. +|..++. +++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++.+++|++|++++|.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~-l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPA-IHHLPKLEELDLRGCT 240 (328)
T ss_dssp CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGG-GGGCTTCCEEECTTCT
T ss_pred ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchh-hccCCCCCEEECcCCc
Confidence 22 4433322 44444444444444444444444444444444444 33333332 3334444444444433
Q ss_pred c
Q 039257 196 A 196 (210)
Q Consensus 196 ~ 196 (210)
+
T Consensus 241 ~ 241 (328)
T 4fcg_A 241 A 241 (328)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=6.2e-18 Score=126.21 Aligned_cols=150 Identities=25% Similarity=0.298 Sum_probs=130.8
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+..++.+|..-. +.++.|++.+|.++.++.. ..+++|+.|+++ ++.+..+++..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N- 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN- 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS-
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC-
Confidence 467888899999886332 6899999999999988753 778999999999 99999887666999999999999999
Q ss_pred cee-ecc-cccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 125 NLK-FLV-GMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 125 ~~~-l~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.++ +|. .+.++++|++|++++|.++.+ |..+..+++|++|++++| .++.++...+..+++|+.|++++|++..+-
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 999 864 468899999999999999977 467889999999999999 888888766899999999999999986543
No 7
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=9.4e-18 Score=125.23 Aligned_cols=153 Identities=16% Similarity=0.233 Sum_probs=131.6
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
..+.+.+..++.+|..- ...++.|++++|.++.++. ...+++|+.|+++ ++.++.+++..|.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECCCC
Confidence 36778888888888532 3568999999999998743 3678999999999 99999998876999999999999999
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.++ + +..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .++.+++..+..+++|+.|++++|++.++.
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 -RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp -CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred -ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 999 6 46689999999999999999977 577889999999999999 888885555999999999999999997766
Q ss_pred chh
Q 039257 201 KVS 203 (210)
Q Consensus 201 ~~~ 203 (210)
+..
T Consensus 170 ~l~ 172 (220)
T 2v70_A 170 YLA 172 (220)
T ss_dssp GGH
T ss_pred chH
Confidence 543
No 8
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.7e-17 Score=122.59 Aligned_cols=151 Identities=21% Similarity=0.318 Sum_probs=131.4
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+.+++.+|... .++++.|++++|.++.++.. ..+++|++|+++ ++.++.++...|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n- 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLSTN- 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCCC-
Confidence 46778888888888433 46899999999999987764 678999999999 89999999877889999999999999
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
.++ +| ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+.+..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 999 75 5578999999999999999988765 688999999999999 8888888768899999999999999877655
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=3.5e-18 Score=134.94 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=134.7
Q ss_pred cEEEecCCCCccCCC-ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhH--------hcCCCCCc
Q 039257 47 NFLVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGF--------FQLMPSLK 116 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~--------~~~l~~L~ 116 (210)
..+.+.++.++.+|. +..+++|++|++++|.+..+|.. ..+++|+.|++++++....+|... +.++++|+
T Consensus 107 ~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~ 186 (328)
T 4fcg_A 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186 (328)
T ss_dssp SEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCC
T ss_pred CEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCC
Confidence 356677778888875 67888999999999999988765 788999999999557777777652 23499999
Q ss_pred EEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 117 VLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 117 ~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
+|++++| .++ +|..++.+++|++|++++|.++.+|..++.+++|+.|++++|...+.+|.. ++.+++|+.|++++|.
T Consensus 187 ~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 187 SLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCS 264 (328)
T ss_dssp EEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCT
T ss_pred EEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCC
Confidence 9999999 999 999999999999999999999999999999999999999999777888875 9999999999999999
Q ss_pred cCCCcchh
Q 039257 196 ASSQLKVS 203 (210)
Q Consensus 196 ~~~~~~~~ 203 (210)
+.+.+|..
T Consensus 265 ~~~~~p~~ 272 (328)
T 4fcg_A 265 NLLTLPLD 272 (328)
T ss_dssp TCCBCCTT
T ss_pred chhhcchh
Confidence 98888753
No 10
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=1.4e-17 Score=128.16 Aligned_cols=152 Identities=25% Similarity=0.366 Sum_probs=134.3
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..+..++.+..+++++.|++++|.++.++.. ..+++|++|+++ ++.+..+++..+..+++|++|++++|
T Consensus 66 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n- 143 (272)
T 3rfs_A 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAHN- 143 (272)
T ss_dssp CEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC-CCcCCccCHHHhccCCCCCEEECCCC-
Confidence 45677788888888888899999999999999987763 778999999999 89999998877889999999999999
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
.++ +| ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .+..++...++.+++|+.|++++|++.+..|
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 144 QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 999 75 5578999999999999999988754 588999999999999 7888887668999999999999999887765
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.4e-17 Score=126.57 Aligned_cols=157 Identities=21% Similarity=0.402 Sum_probs=134.5
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|..- ...++.|++++|.+..++. ...+++|+.|+++ ++.++.++...|..+++|++|++++|
T Consensus 19 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n- 95 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN-DNKLQTLPAGIFKELKNLETLWVTDN- 95 (270)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECC-SSCCSCCCTTTTSSCTTCCEEECCSS-
T ss_pred CEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECC-CCccCeeChhhhcCCCCCCEEECCCC-
Confidence 46788888999888533 2679999999999998875 3788999999999 89999999887889999999999999
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
.++ +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..+|...+..+++|+.|++++|.+. .++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCC
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc-EeC
Confidence 999 75 567889999999999999998765 4689999999999999 889998876899999999999999884 456
Q ss_pred hhhhhhc
Q 039257 202 VSTWENL 208 (210)
Q Consensus 202 ~~~f~~l 208 (210)
...|.++
T Consensus 174 ~~~~~~l 180 (270)
T 2o6q_A 174 EGAFDKL 180 (270)
T ss_dssp TTTTTTC
T ss_pred hhHhccC
Confidence 5555543
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=1.8e-17 Score=126.00 Aligned_cols=149 Identities=25% Similarity=0.337 Sum_probs=130.7
Q ss_pred EEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 48 FLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 48 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
.+.+.+..+..++. +..+++++.|++++|.++.++.. ..+++|++|+++ ++.++.+++..|..+++|++|++++|
T Consensus 39 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~N 117 (251)
T 3m19_A 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYLGGN 117 (251)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-CCcccccChhHhcccCCCCEEEcCCC
Confidence 45667777777653 66778999999999999987664 778999999999 99999999877899999999999999
Q ss_pred ccee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 124 WNLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.++ +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .++.+|...+..+++|+.|++++|++...
T Consensus 118 -~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 118 -QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred -cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999 76 456889999999999999998876 5789999999999999 88888876689999999999999999765
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=7.3e-18 Score=123.66 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=111.4
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..++.+|.+..+++++.|++++|.++.++....+++|+.|+++ ++.+.......+..+++|++|++++| .++
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEECCSS-BCB
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEecCC-ccC
Confidence 4566777777778778888888888888877776666778888888888 77777532222778888888888888 777
Q ss_pred --ecccccCCCcCCEEeccCCc-CcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 --FLVGMSKLGSLQLLDISQNA-IEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 --l~~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
.|..++.+++|++|++++|. ++.+| .+..+++|+.|++++| .++.++. +..+++|++|++++|++.
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 56778888888888888886 77776 6788888888888888 7777773 788888888888888764
No 14
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=7.5e-18 Score=142.99 Aligned_cols=155 Identities=22% Similarity=0.262 Sum_probs=131.9
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+.+++.+|..- ...+++|++++|.++.++.. ..+++|++|+++ ++.++.++++.|.++++|++|++++|
T Consensus 34 ~~~~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N- 110 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN- 110 (635)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred CEEECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCC-
Confidence 45678888999998532 25799999999999998754 889999999999 99999999887999999999999999
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCC--CcccccCCCCCCeEEeeccccCCC
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKI--PRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.++ +| ..+.++.+|++|++++|.++.+|. .++++++|++|++++| .+..+ |. .++.+++|++|++++|.+.+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~- 187 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPE-YFSNLTNLEHLDLSSNKIQS- 187 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCG-GGGGCTTCCEEECCSSCCCE-
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCch-hhccchhhhhhcccCccccc-
Confidence 999 86 678999999999999999998875 4799999999999999 66654 55 48899999999999998854
Q ss_pred cchhhhhh
Q 039257 200 LKVSTWEN 207 (210)
Q Consensus 200 ~~~~~f~~ 207 (210)
+++..|..
T Consensus 188 ~~~~~l~~ 195 (635)
T 4g8a_A 188 IYCTDLRV 195 (635)
T ss_dssp ECGGGGHH
T ss_pred cccccccc
Confidence 44455544
No 15
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=2.6e-17 Score=131.56 Aligned_cols=156 Identities=23% Similarity=0.341 Sum_probs=132.5
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--C-CCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--P-TCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
..+.|.+..++.+|..- ...++.|++++|.++.++.. . .+++|+.|+++ ++.+..+++..|.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCC
Confidence 36788889999988532 35799999999999987665 3 88999999999 99999999877999999999999999
Q ss_pred ccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccc---cCCCCCCeEEeeccccC
Q 039257 124 WNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLI---SNFSRLRGLRKFITCAS 197 (210)
Q Consensus 124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~---~~l~~L~~L~l~~~~~~ 197 (210)
.++ ++ ..+.++.+|++|++++|.++.+ |..+..+++|+.|++++| .+..+|...+ ..+++|+.|++++|.+.
T Consensus 99 -~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 99 -HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred -cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999 75 5788999999999999999977 567899999999999999 8999998755 57999999999999984
Q ss_pred CCcchhhhhh
Q 039257 198 SQLKVSTWEN 207 (210)
Q Consensus 198 ~~~~~~~f~~ 207 (210)
.++...|..
T Consensus 177 -~l~~~~~~~ 185 (361)
T 2xot_A 177 -KLPLTDLQK 185 (361)
T ss_dssp -CCCHHHHHH
T ss_pred -ccCHHHhhh
Confidence 566655543
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=2.8e-17 Score=127.65 Aligned_cols=138 Identities=24% Similarity=0.286 Sum_probs=93.4
Q ss_pred cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCE
Q 039257 63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQL 140 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~ 140 (210)
..+++++.|++++|.++.++....+++|++|+++ ++.++.+|.. +..+++|++|++++| .++ +| ..+.++++|++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLS-HNQLQSLPLL-GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECC-SSCCSSCCCC-TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccCCCCCCcCCEEECC-CCcCCcCchh-hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCE
Confidence 3444555555555555555444556667777777 6667766665 567777777777777 777 54 56777777777
Q ss_pred EeccCCcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhh
Q 039257 141 LDISQNAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTW 205 (210)
Q Consensus 141 L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f 205 (210)
|++++|.++.+|.. +..+++|+.|++++| .++.+|..++..+++|++|++++|.+. .+|...|
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 77777777766644 466777777777777 677777665667777888888777774 5555444
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=9.8e-17 Score=124.54 Aligned_cols=149 Identities=22% Similarity=0.176 Sum_probs=132.0
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
..+.+.++.++.++....+++++.|++++|.++.++.. ..+++|+.|+++ ++.++.+++..|.++++|++|++++| .
T Consensus 58 ~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~L~~N-~ 135 (290)
T 1p9a_G 58 TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGN-E 135 (290)
T ss_dssp CEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEECTTS-C
T ss_pred CEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEECCCC-C
Confidence 35667777888887778888999999999999988876 788999999999 99999999777999999999999999 9
Q ss_pred ee-ec-ccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 126 LK-FL-VGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 126 ~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
++ +| ..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .++.+|.. +..+++|+.+++++|++...
T Consensus 136 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~-~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG-FFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCCCSEEECCSCCBCCS
T ss_pred CCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChh-hcccccCCeEEeCCCCccCc
Confidence 99 75 55788999999999999999998654 78999999999999 89999997 78889999999999998654
No 18
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.5e-16 Score=124.56 Aligned_cols=140 Identities=24% Similarity=0.338 Sum_probs=83.7
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..+..++.+..+++++.|++++|.+..++....+++|+.|+++ ++.++.++. +..+++|++|++++| .++
T Consensus 45 ~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~ 120 (308)
T 1h6u_A 45 TLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELS-GNPLKNVSA--IAGLQSIKTLDLTST-QIT 120 (308)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECC-SCCCSCCGG--GTTCTTCCEEECTTS-CCC
T ss_pred EEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEcc-CCcCCCchh--hcCCCCCCEEECCCC-CCC
Confidence 4455566666666666667777777777776665555556666666666 555666543 556666666666666 666
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
++. +..+++|++|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|++|++++|.+
T Consensus 121 ~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 121 DVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred Cchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc
Confidence 543 5555666666666665555543 455555555555555 4555544 45555555555555554
No 19
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=8.9e-17 Score=124.22 Aligned_cols=145 Identities=23% Similarity=0.337 Sum_probs=66.8
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
.+.|.+..++.+|.. ..++++.|+++++.++.++.. ..+++|+.|+++ ++.++.+++..+..+++|++|++++| .
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~ 91 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN-A 91 (285)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSC-T
T ss_pred EEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCCccCCCEEeCCCC-C
Confidence 345555555555531 224555555555555544321 444555555555 44444443333444555555555554 3
Q ss_pred -ee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 126 -LK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 126 -~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
++ + |..+..+++|++|++++|.++.+ |..+..+++|++|++++| .++.++...++.+++|++|++++|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 165 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRI 165 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcc
Confidence 44 3 34444444444444444444433 223344444444444444 34444433334444444444444433
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.1e-16 Score=125.28 Aligned_cols=145 Identities=18% Similarity=0.225 Sum_probs=105.0
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
..+.+.+..+..++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++. +..+++|++|++++| .+
T Consensus 66 ~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l 141 (308)
T 1h6u_A 66 IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT-STQITDVTP--LAGLSNLQVLYLDLN-QI 141 (308)
T ss_dssp CEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT-TSCCCCCGG--GTTCTTCCEEECCSS-CC
T ss_pred CEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC-CCCCCCchh--hcCCCCCCEEECCCC-cc
Confidence 34566677777777777777888888888888777666777888888888 777777665 677778888888877 77
Q ss_pred e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
+ ++. ++.+++|++|++++|.++.++. +..+++|+.|++++| .++.++. +..+++|++|++++|.+.+..
T Consensus 142 ~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 142 TNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCG
T ss_pred CcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCccCccc
Confidence 7 654 6677777777777777776655 667777777777777 6666665 666777777777777664433
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=1.1e-16 Score=123.12 Aligned_cols=155 Identities=22% Similarity=0.272 Sum_probs=126.3
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+..+..+|..- .+.++.|++++|.++.++. ...+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n- 86 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN- 86 (276)
T ss_dssp TEEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-
T ss_pred ceEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCC-
Confidence 35678888888888632 2579999999999988764 3778999999999 88888888766889999999999999
Q ss_pred cee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccCCC
Q 039257 125 NLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 125 ~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.++ + +..+.++++|++|++++|.++.++. .++.+++|++|++++| .+.. +|.. ++.+++|++|++++|.+. .
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~-~ 163 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ-S 163 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCC-E
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCC-c
Confidence 888 6 4778899999999999999887765 5788999999999999 6766 5664 889999999999999884 3
Q ss_pred cchhhhhh
Q 039257 200 LKVSTWEN 207 (210)
Q Consensus 200 ~~~~~f~~ 207 (210)
++...|..
T Consensus 164 ~~~~~~~~ 171 (276)
T 2z62_A 164 IYCTDLRV 171 (276)
T ss_dssp ECGGGGHH
T ss_pred CCHHHhhh
Confidence 44444443
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=1.1e-16 Score=123.70 Aligned_cols=130 Identities=23% Similarity=0.332 Sum_probs=64.3
Q ss_pred CCCccEEEeeccc-ccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCC
Q 039257 65 WENVRRLSLMQNQ-IETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQ 139 (210)
Q Consensus 65 ~~~l~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~ 139 (210)
+++++.|++++|. +..++.. ..+++|++|+++ ++.+..+++..+..+++|++|++++| .++ ++ ..++.+++|+
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLT 156 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC-CCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCcc
Confidence 3444444444443 3333211 344455555555 44444444333445555555555555 555 33 3344555555
Q ss_pred EEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 140 LLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 140 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+|++++|.++.+|. .+..+++|+.|++++| .+..++...++.+++|+.|++++|.+.
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCC
Confidence 55555555554443 2455555555555555 444442223555666666666666553
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.72 E-value=7e-17 Score=136.91 Aligned_cols=156 Identities=21% Similarity=0.236 Sum_probs=133.8
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
...+.|.+.+++.+|... .++++.|++++|.++.++.. ..+++|++|+++ ++.++.+++..|.++++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCC
Confidence 456789999999999633 37899999999999987663 789999999999 88999887776899999999999999
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCC--CCCcccccCCCCCCeEEeeccccCC
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLN--KIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
.++ + |..++++++|++|++++|.++.+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|.+.+
T Consensus 91 -~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 91 -PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp -CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCE
T ss_pred -cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCccee
Confidence 898 6 889999999999999999998776 67899999999999999 666 46775 9999999999999998854
Q ss_pred Ccchhhhhh
Q 039257 199 QLKVSTWEN 207 (210)
Q Consensus 199 ~~~~~~f~~ 207 (210)
+++..|..
T Consensus 168 -~~~~~~~~ 175 (606)
T 3vq2_A 168 -ITVNDLQF 175 (606)
T ss_dssp -ECTTTTHH
T ss_pred -cChhhhhh
Confidence 44444443
No 24
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=3.1e-16 Score=121.78 Aligned_cols=141 Identities=21% Similarity=0.343 Sum_probs=95.0
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..+..++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++. +..+++|++|++++| .++
T Consensus 50 ~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~L~~n-~i~ 125 (291)
T 1h6t_A 50 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLD-ENKVKDLSS--LKDLKKLKSLSLEHN-GIS 125 (291)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCGGG--GTTCTTCCEEECTTS-CCC
T ss_pred EEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECC-CCcCCCChh--hccCCCCCEEECCCC-cCC
Confidence 4556666777777777777777888877777766656667777777777 666766554 667777777777777 666
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++| .+..++. +..+++|++|++++|.+.
T Consensus 126 ~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 126 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC
Confidence 53 456666677777777766665 45566666666666666 5666654 566666666666666553
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=7.4e-17 Score=121.64 Aligned_cols=136 Identities=15% Similarity=0.284 Sum_probs=69.9
Q ss_pred CccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCC-CcccchhHhcCCCCCcEEecCC-cccee-ec-
Q 039257 56 LEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGE-LKMIADGFFQLMPSLKVLKMSN-CWNLK-FL- 129 (210)
Q Consensus 56 ~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~-l~- 129 (210)
++.+|. -...++.|++++|.++.++.. ..+++|+.|+++ ++. ++.+++..|.++++|++|++++ | .++ +|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVS-IDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEE-CCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCC-CCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCH
Confidence 445554 223566666666665555442 445566666665 443 5555554455566666666655 5 555 43
Q ss_pred ccccCCCcCCEEeccCCcCcccchhhhcCCCCc---EEEccCCCCCCCCCcccccCCCCCC-eEEeecccc
Q 039257 130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLT---CLNLRGTGQLNKIPRQLISNFSRLR-GLRKFITCA 196 (210)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~---~L~l~~~~~~~~lp~~~~~~l~~L~-~L~l~~~~~ 196 (210)
..+.++++|++|++++|.++.+|. +..+++|+ .|++++|..++.+|...+..+++|+ .|++++|.+
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 345555555555555555555543 44444444 5555444334444443344444454 555544444
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=133.62 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=131.8
Q ss_pred cccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 45 KINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
....+.|.+.+++.+|.. -.+.++.|++++|.++.++.. ..+++|++|+++ ++.+..+++..|.++++|++|++++
T Consensus 8 ~~~~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTTEEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCcEEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcC
Confidence 345788888899999863 236899999999999887643 789999999999 8889988877789999999999999
Q ss_pred cccee-e-cccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccC
Q 039257 123 CWNLK-F-LVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 123 ~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
| .++ + |..++++.+|++|++++|.++.+|. .++++++|++|++++| .+.. +|.. ++++++|++|++++|.+.
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 86 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp C-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred C-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccc
Confidence 9 898 6 5789999999999999999998875 5889999999999999 6665 6775 999999999999999884
Q ss_pred CCcchhhhh
Q 039257 198 SQLKVSTWE 206 (210)
Q Consensus 198 ~~~~~~~f~ 206 (210)
+ +++..|.
T Consensus 163 ~-~~~~~~~ 170 (570)
T 2z63_A 163 S-IYCTDLR 170 (570)
T ss_dssp E-ECGGGGH
T ss_pred e-ecHHHcc
Confidence 4 4444444
No 27
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.7e-16 Score=118.41 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=116.5
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~ 146 (210)
+.++..++.++.+|.... +.++.|+++ ++.++.+++..|..+++|++|++++| .++ + |..+.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC
Confidence 568888888888877532 789999999 99999999876899999999999999 999 6 789999999999999999
Q ss_pred cCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 147 AIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 147 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
.++.+|.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+. .++...|..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 151 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPL 151 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCC
Confidence 99999876 478999999999999 888887666999999999999999985 4455555543
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=2e-16 Score=129.43 Aligned_cols=140 Identities=24% Similarity=0.335 Sum_probs=70.6
Q ss_pred cCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 63 KEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
..+++|+.|++++|.++.++.. ..+++|+.|++++++.+..++...|.++++|++|++++| .++ +| .+..+.+|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcccc-ccCCCcccC
Confidence 3344444444444444443331 334444444444223444444433444555555555555 554 44 244455555
Q ss_pred EEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257 140 LLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE 206 (210)
Q Consensus 140 ~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~ 206 (210)
+|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+. .++...|.
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 276 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT 276 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTS
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhc
Confidence 555555555544 344555666666666666 555554444566666666666666653 34444443
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.2e-16 Score=117.16 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=116.2
Q ss_pred cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257 63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL 140 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~ 140 (210)
..+++++.|+++++.+..++....+++|++|+++ ++.+..++. +..+++|++|++++| .++ .+..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~-~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTIN-NIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEE-SCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEcc-CCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 4557899999999999988866889999999999 778877764 889999999999999 888 5888999999999
Q ss_pred EeccCCcCcc-cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 141 LDISQNAIEE-LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 141 L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
|++++|.++. .|..++.+++|++|++++|..++.+|. +..+++|++|++++|.+...
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh
Confidence 9999999984 678889999999999999943899984 89999999999999998653
No 30
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2e-16 Score=122.82 Aligned_cols=143 Identities=21% Similarity=0.312 Sum_probs=128.7
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
..+.+.++.++.++.+..+++++.|++.+|.++.++....+++|+.|+++ ++.+..++. +..+++|+.|++++| .+
T Consensus 71 ~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~i~~~~~--l~~l~~L~~L~l~~n-~l 146 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYLGNN-KI 146 (291)
T ss_dssp CEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS-CC
T ss_pred CEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECC-CCcCCCChh--hcCCCCCCEEEccCC-cC
Confidence 35677788888888888889999999999999988878889999999999 888998864 789999999999999 99
Q ss_pred e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257 127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
+ + ..++.+++|++|++++|.++.++. +..+++|+.|++++| .++.+|. +..+++|+.|++++|.+..
T Consensus 147 ~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 147 TDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred Ccc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC-cCCCChh--hccCCCCCEEECcCCcccC
Confidence 9 8 578899999999999999998876 899999999999999 8999975 8999999999999998743
No 31
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=127.48 Aligned_cols=149 Identities=23% Similarity=0.298 Sum_probs=115.2
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
...+.+..++.+|.. -.++++.|++++|.++.++. ...+++|++|+++ ++.++.+++..|.++++|++|++++| .
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCC-c
Confidence 356667788888753 23578899999998888765 3778888888888 77888777665788888888888888 8
Q ss_pred ee-eccc-ccCCCcCCEEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 126 LK-FLVG-MSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 126 ~~-l~~~-~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
++ +|.. ++++++|++|++++|.++.+|. .+..+++|++|++++|..++.++...++.+++|++|++++|.+.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 88 7644 7788888888888888888776 5678888888888888556776554477888888888888877443
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=6.9e-17 Score=121.79 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=84.9
Q ss_pred EEEecCCCCccCCC--ccCCCCccEEEeeccc-ccccCCC--CCCCCccEEEcccC-CCCcccchhHhcCCCCCcEEecC
Q 039257 48 FLVCAGAGLEEAPD--VKEWENVRRLSLMQNQ-IETLSEV--PTCPHFVTLFLDFN-GELKMIADGFFQLMPSLKVLKMS 121 (210)
Q Consensus 48 ~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~l~~~--~~~~~L~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~ 121 (210)
.+.+.+..++.+|. +..+++++.|++++|. ++.++.. ..+++|++|+++ + +.++.+++..|.++++|++|+++
T Consensus 35 ~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~~~f~~l~~L~~L~l~ 113 (239)
T 2xwt_C 35 TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLKFLGIF 113 (239)
T ss_dssp EEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECTTSEECCTTCCEEEEE
T ss_pred EEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCHHHhCCCCCCCEEeCC
Confidence 45556666666654 5566778888888885 7766643 567778888887 5 77777776557777777777777
Q ss_pred Ccccee-ecccccCCCcCC---EEeccCC-cCcccchh-hhcCCCCc-EEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257 122 NCWNLK-FLVGMSKLGSLQ---LLDISQN-AIEELPEE-LKLLINLT-CLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT 194 (210)
Q Consensus 122 ~~~~~~-l~~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 194 (210)
+| .++ +|. +..+.+|+ +|++++| .++.+|.. +..+++|+ .|++++| .++.+|...+.. ++|+.|++++|
T Consensus 114 ~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 114 NT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEECTTC
T ss_pred CC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEcCCC
Confidence 77 666 654 44444444 5555555 55544432 44455555 5555554 444444432222 44444444444
No 33
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=3.9e-16 Score=119.52 Aligned_cols=143 Identities=18% Similarity=0.286 Sum_probs=120.0
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
..+.+.+..++.++.+..+++++.|++++|.++.++....+++|+.|+++ ++.++.++. +.. ++|++|++++| .+
T Consensus 44 ~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~-~N~l~~l~~--~~~-~~L~~L~L~~N-~l 118 (263)
T 1xeu_A 44 QNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN-RNRLKNLNG--IPS-ACLSRLFLDNN-EL 118 (263)
T ss_dssp SEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC-SSCCSCCTT--CCC-SSCCEEECCSS-CC
T ss_pred cEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC-CCccCCcCc--ccc-CcccEEEccCC-cc
Confidence 35667778888888888888999999999998887777788899999999 888888876 334 88999999999 88
Q ss_pred e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
+ ++ .+..+++|++|++++|.++.+| .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+...
T Consensus 119 ~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 119 RDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTT--STTCCCCCEEEEEEEEEECC
T ss_pred CCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHH--hccCCCCCEEeCCCCcccCC
Confidence 8 76 5888999999999999998886 6888999999999999 7888743 88999999999999987543
No 34
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=4.1e-16 Score=128.05 Aligned_cols=147 Identities=25% Similarity=0.314 Sum_probs=99.7
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+..++.+|..- .++++.|++++|.++.++.. ..+++|+.|+++ ++.+..+++..|.++++|++|++++|
T Consensus 57 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~n- 133 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG-RNSIRQIEVGAFNGLASLNTLELFDN- 133 (452)
T ss_dssp CEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-
T ss_pred cEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECC-CCccCCcChhhccCcccCCEEECCCC-
Confidence 35677888888888532 36788999999988876433 778888888888 78888777666788888888888888
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
.++ +| ..+..+++|++|++++|.++.+|. .+.++++|+.|++++|..++.++...+..+++|++|++++|.+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 888 64 457778888888888888776654 3445555555555554344444443344444444444444433
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=5e-16 Score=127.53 Aligned_cols=152 Identities=20% Similarity=0.277 Sum_probs=78.8
Q ss_pred EecCCCCccCC--CccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchh------------------
Q 039257 50 VCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADG------------------ 107 (210)
Q Consensus 50 ~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~------------------ 107 (210)
.+.++.+..++ .+..+++|+.|++++|.++.++.. ..+++|+.|+++ ++.+..++..
T Consensus 105 ~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~~~~ 183 (452)
T 3zyi_A 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR-NNPIESIPSYAFNRVPSLMRLDLGELKK 183 (452)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECCCCTT
T ss_pred ECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC-CCCcceeCHhHHhcCCcccEEeCCCCCC
Confidence 33444444333 233444555555555555544432 344555555555 4444444443
Q ss_pred -------HhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257 108 -------FFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 108 -------~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (210)
.|.++++|++|++++| .++ +| .+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++..
T Consensus 184 l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 260 (452)
T 3zyi_A 184 LEYISEGAFEGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERN 260 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTT
T ss_pred ccccChhhccCCCCCCEEECCCC-cccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHH
Confidence 3444445555555555 444 43 244455555555555555544 345566666666666666 55555444
Q ss_pred cccCCCCCCeEEeeccccCCCcchhhhh
Q 039257 179 LISNFSRLRGLRKFITCASSQLKVSTWE 206 (210)
Q Consensus 179 ~~~~l~~L~~L~l~~~~~~~~~~~~~f~ 206 (210)
.+..+++|+.|++++|.+. .++...|.
T Consensus 261 ~~~~l~~L~~L~L~~N~l~-~~~~~~~~ 287 (452)
T 3zyi_A 261 AFDGLASLVELNLAHNNLS-SLPHDLFT 287 (452)
T ss_dssp TTTTCTTCCEEECCSSCCS-CCCTTSST
T ss_pred HhcCCCCCCEEECCCCcCC-ccChHHhc
Confidence 4666677777777766663 44444443
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=6.2e-16 Score=126.57 Aligned_cols=146 Identities=25% Similarity=0.332 Sum_probs=98.0
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.|.+..++.+|..- .+.++.|++++|.++.++.. ..+++|+.|+++ ++.+..+++..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n- 122 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN- 122 (440)
T ss_dssp CEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEECCSS-
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEECCCC-
Confidence 35678888888888533 26788888888888876533 777888888888 77788777666788888888888888
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
.++ +| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++...+..+++|++|++++|.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~ 196 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence 887 65 467778888888888887776653 344555555555555434444444334444444444444433
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.69 E-value=5.8e-16 Score=127.80 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=115.6
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
...+.|.+..++.+|..- ...++.|++++|.++.++. ...+++|++|+++ ++.+..+++..|.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECCCC
Confidence 346778888888888532 3578889999988887643 3778888888888 77888776655888888888888888
Q ss_pred ccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 124 WNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.++ +| ..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|++|++++|.+. .+
T Consensus 91 -~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 167 (477)
T 2id5_A 91 -RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167 (477)
T ss_dssp -CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCS-SC
T ss_pred -cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCc-cc
Confidence 888 75 4567888888888888887755 456777888888888887 666665544777788888888777763 34
Q ss_pred chhhhh
Q 039257 201 KVSTWE 206 (210)
Q Consensus 201 ~~~~f~ 206 (210)
+...|.
T Consensus 168 ~~~~l~ 173 (477)
T 2id5_A 168 PTEALS 173 (477)
T ss_dssp CHHHHT
T ss_pred ChhHhc
Confidence 444443
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.69 E-value=4.5e-16 Score=127.57 Aligned_cols=155 Identities=22% Similarity=0.290 Sum_probs=129.1
Q ss_pred ccccccEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEE
Q 039257 42 EKEKINFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVL 118 (210)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L 118 (210)
|......+.|.+.+++.+|. -.+++++|++++|.++.++. ...+++|++|+++ .+.+. .+++..|.++++|++|
T Consensus 8 c~~~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 8 CSVIGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp CEEETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCCEE
T ss_pred eEEEccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECc-CCcccceECcccccccccCCEE
Confidence 33345568899999999997 34789999999999988633 3889999999999 77665 6776668999999999
Q ss_pred ecCCcccee-e-cccccCCCcCCEEeccCCcCcc-cchh--hhcCCCCcEEEccCCCCCCCC-CcccccCCCCCCeEEee
Q 039257 119 KMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEE-LPEE--LKLLINLTCLNLRGTGQLNKI-PRQLISNFSRLRGLRKF 192 (210)
Q Consensus 119 ~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~ 192 (210)
++++| .++ + |..++++++|++|++++|.++. .|.. +..+++|++|++++| .+..+ |..+++.+++|++|+++
T Consensus 85 ~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 85 KLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTC-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCC-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCC
Confidence 99999 888 5 8899999999999999999884 4444 889999999999999 67766 54447899999999999
Q ss_pred ccccCCCcc
Q 039257 193 ITCASSQLK 201 (210)
Q Consensus 193 ~~~~~~~~~ 201 (210)
+|.+.+..+
T Consensus 163 ~n~l~~~~~ 171 (455)
T 3v47_A 163 FNKVKSICE 171 (455)
T ss_dssp TCCBSCCCT
T ss_pred CCcccccCh
Confidence 999865544
No 39
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.1e-16 Score=120.96 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=122.3
Q ss_pred ecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec
Q 039257 51 CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL 129 (210)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~ 129 (210)
+.+..++.++.+..+++++.|++.+|.++.++....+++|+.|+++ ++.++.+++ +..+++|++|++++| .++ +|
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~-~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~ 101 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS-HNQISDLSP--LKDLTKLEELSVNRN-RLKNLN 101 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCSS-CCSCCT
T ss_pred hcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECC-CCccCCChh--hccCCCCCEEECCCC-ccCCcC
Confidence 3445666677777788999999999999998876889999999999 999999888 889999999999999 999 87
Q ss_pred ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.... .+|++|++++|.++.+| .+..+++|+.|++++| .++.++. ++.+++|++|++++|.+.+.
T Consensus 102 ~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp TCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC
T ss_pred cccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch
Confidence 5433 89999999999999885 5889999999999999 8999974 89999999999999998655
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=3.8e-16 Score=121.79 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=104.6
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCccc---chhHhcCCCCCcEEecCC
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMI---ADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~ 122 (210)
.+.|.+..++.+|.. ..+++++|++++|.++.++.. ..+++|+.|+++ ++.+..+ +.. +..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~-~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQS-DFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHH-HHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCcccc-cccccccCEEECCC
Confidence 567888888888853 236889999999988887764 678889999998 7777755 333 56788888888888
Q ss_pred cccee-ecccccCCCcCCEEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257 123 CWNLK-FLVGMSKLGSLQLLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 123 ~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
| .+. +|..+..+++|++|++++|.++.++. .+..+++|++|++++| .+...+...+..+++|++|++++|.+.+
T Consensus 88 n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 88 N-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp C-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred C-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc
Confidence 8 888 77777778888888888887776653 5666777777777777 4444433335566666666666665543
No 41
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=4.4e-16 Score=113.75 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=93.2
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchh-HhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADG-FFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQ 145 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~ 145 (210)
+.++++++.++.+|... ..+++.|+++ ++.++.+++. .|..+++|++|++++| .++ + |..+.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECC-CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 46667777776666542 2367777887 7777776653 3677888888888888 777 5 67777788888888888
Q ss_pred CcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257 146 NAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS 203 (210)
Q Consensus 146 ~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 203 (210)
|.++.++. .+..+++|++|++++| .++.+++..+..+++|++|++++|++.+..+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 88776654 3677788888888888 666654444777888888888888877665543
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.68 E-value=8.9e-16 Score=134.98 Aligned_cols=152 Identities=17% Similarity=0.176 Sum_probs=128.8
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
+..+.|.+..++.+|. .+++++.|++++|.++.+... ..+++|++|+++++..+..+++..|.++++|++|++++|
T Consensus 6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 4678899999999997 568999999999999886433 889999999999444677886666999999999999999
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCcc-cchh--hhcCCCCcEEEccCCCCCCCCC-cccccCCCCCCeEEeeccccC
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEE-LPEE--LKLLINLTCLNLRGTGQLNKIP-RQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L~~L~l~~~~~~ 197 (210)
.++ + |..++++++|++|++++|.++. +|.. ++++++|++|++++| .+..++ ...++++++|++|++++|.+.
T Consensus 84 -~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 84 -KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp -CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred -cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 898 5 8999999999999999999884 5554 889999999999999 666653 234899999999999999886
Q ss_pred CCcc
Q 039257 198 SQLK 201 (210)
Q Consensus 198 ~~~~ 201 (210)
+..+
T Consensus 162 ~~~~ 165 (844)
T 3j0a_A 162 LVCE 165 (844)
T ss_dssp CCCS
T ss_pred eeCH
Confidence 5443
No 43
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=8.4e-16 Score=115.29 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=115.8
Q ss_pred ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccC
Q 039257 68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQ 145 (210)
Q Consensus 68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~ 145 (210)
.+.++.+++.+..+|... .++|+.|+++ ++.+..+++..|.++++|++|++++| .++ +| ..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 456888888888887753 3889999999 99999887776899999999999999 999 76 5678999999999999
Q ss_pred CcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 146 NAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 146 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
|.++.+|.. +..+++|+.|++++| .++.+|.. +..+++|++|++++|.+. .++...|..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 158 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK-SIPHGAFDRL 158 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC-CCCTTTTTTC
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC-ccCHHHHhCC
Confidence 999988765 588999999999999 89999986 899999999999999885 5565556543
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.6e-16 Score=120.27 Aligned_cols=127 Identities=25% Similarity=0.340 Sum_probs=93.7
Q ss_pred EEEecCCCCccCC--CccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 48 FLVCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 48 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
.+.+.+..++.++ .+..+++++.|++++|.+..++. ...+++|++|+++ ++.+..+++..+.++++|++|++++|
T Consensus 32 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECC-CCccCccChhhhcCCccccEEECCCC
Confidence 4556666666665 35666788888888888877654 3667888888888 77777777655778888888888888
Q ss_pred ccee-ec-ccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 124 WNLK-FL-VGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 124 ~~~~-l~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
.+. ++ ..++.+++|++|++++|.++. +|..+..+++|++|++++| .++.++.
T Consensus 111 -~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~ 166 (276)
T 2z62_A 111 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYC 166 (276)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECG
T ss_pred -CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCH
Confidence 777 54 467778888888888887775 5777778888888888877 6665543
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.68 E-value=7.9e-16 Score=130.44 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=129.2
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
...+.|.+.+++.+|..- ...++.|++++|.++.++.. ..+++|++|+++ ++.+..+.+..|.++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCC
Confidence 456788888999988633 25799999999999987543 889999999999 88888887666899999999999999
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.+. + |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..++...+..+++|++|++++|.+. .+
T Consensus 92 -~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~ 168 (606)
T 3t6q_A 92 -PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIH-YL 168 (606)
T ss_dssp -CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCC-EE
T ss_pred -cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccc-cc
Confidence 888 5 78899999999999999999977 567889999999999999 777763222566999999999999884 44
Q ss_pred chhhhhh
Q 039257 201 KVSTWEN 207 (210)
Q Consensus 201 ~~~~f~~ 207 (210)
++..|..
T Consensus 169 ~~~~~~~ 175 (606)
T 3t6q_A 169 SKEDMSS 175 (606)
T ss_dssp CHHHHHT
T ss_pred Chhhhhh
Confidence 4444444
No 46
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=111.44 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=97.0
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~ 146 (210)
+.++++++.++.+|... .++++.|+++ ++.++.+|.. |..+++|++|++++| .++ + +..+.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~-~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLD-GNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECC-SSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECC-CCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 45666677776666542 2578888888 7778888754 788888888888888 888 6 466788888888888888
Q ss_pred cCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 147 AIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 147 ~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.++.+|. .+..+++|++|++++| .++.+|...+..+++|+.|++++|++..+-
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 8887764 5778888888888888 778888766778888888888888876543
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=5.7e-16 Score=124.78 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=109.1
Q ss_pred CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257 64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ 139 (210)
Q Consensus 64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~ 139 (210)
.+.+++.+++.++.++.+|.. ..+++|++|+++ ++.+..+++..|..+++|++|++++| .++ + |..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 456788888888888887764 667888888888 77788877755788888888888888 888 5 56678888888
Q ss_pred EEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 140 LLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
+|++++|.++.+|..+ ..+++|++|++++| .+..++...++.+++|++|++++|.+.. ++...+++
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~ 187 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS 187 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSB-CCGGGCTT
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCc-cccccccc
Confidence 8888888888887664 78888888888888 7777766557888888888888887743 34444443
No 48
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=9.1e-16 Score=130.09 Aligned_cols=140 Identities=22% Similarity=0.327 Sum_probs=80.9
Q ss_pred EEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK- 127 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~- 127 (210)
+.+.++.+..++.+..+++|+.|++++|.+..++....+++|+.|+++ .+.+..++. +..+++|+.|++++| .++
T Consensus 70 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~~ 145 (605)
T 1m9s_A 70 LFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE-HNGISDING--LVHLPQLESLYLGNN-KITD 145 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECT-TSCCCCCGG--GGGCTTCSEEECCSS-CCCC
T ss_pred EEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEec-CCCCCCCcc--ccCCCccCEEECCCC-ccCC
Confidence 344444444444444555555555555555555544555566666666 555555543 555666666666666 555
Q ss_pred ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+ ..++.+++|+.|++++|.++.++. +..+++|+.|++++| .+..+|. +..+++|+.|++++|.+.
T Consensus 146 l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~--l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 146 I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECL 210 (605)
T ss_dssp C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCSEEEE
T ss_pred c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCChH--HccCCCCCEEEccCCcCc
Confidence 5 345566666666666666665544 566666666666666 5566543 666666666666666553
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=6.5e-16 Score=120.50 Aligned_cols=148 Identities=20% Similarity=0.294 Sum_probs=86.4
Q ss_pred EEecCCCCccCCC-ccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
+.+.+..+..+|. +..+++++.|++++|.+..++. ...+++|+.|+++ ++.+...++..+..+++|++|++++|
T Consensus 83 L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n- 160 (306)
T 2z66_A 83 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGN- 160 (306)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTC-
T ss_pred EECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCC-
Confidence 3444444444432 3445566666666666665543 2556666666666 55555554444566666666666666
Q ss_pred cee---ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 125 NLK---FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 125 ~~~---l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.++ +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+.+.
T Consensus 161 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 161 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred ccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCccc
Confidence 554 355566666666666666666654 445556666666666666 55555543355666666666666665443
No 50
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=1.3e-15 Score=130.81 Aligned_cols=150 Identities=19% Similarity=0.221 Sum_probs=127.8
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
...+.|.+..++.+|..- .++++.|++++|.++.++.. ..+++|++|+++ ++.+..+++..+.++++|++|++++|
T Consensus 6 ~~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 6 HEVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SSEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CCeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCC
Confidence 346888999999988533 36899999999999887753 778999999999 88898887777899999999999999
Q ss_pred ccee-ecc-cccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 124 WNLK-FLV-GMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 124 ~~~~-l~~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
.++ +|. .++++.+|++|++++|.++.+| ..++++++|++|++++| .+...+...++++++|++|++++|.+.+.
T Consensus 84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred -ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCccccc
Confidence 999 864 6899999999999999998876 56889999999999999 66666554588999999999999987544
No 51
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.9e-16 Score=113.03 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=109.1
Q ss_pred CCccEEEeeccccc--ccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257 66 ENVRRLSLMQNQIE--TLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL 140 (210)
Q Consensus 66 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~ 140 (210)
++++.|++++|.+. .++.. ..+++|+.|+++ ++.++.+ .. +..+++|++|++++| .++ +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~-~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV-SN-LPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC-SS-CCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh-hh-hccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 67999999999988 67776 778999999999 8888887 33 788999999999999 888 5666777999999
Q ss_pred EeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEeeccccC
Q 039257 141 LDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 141 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~~~~~~ 197 (210)
|++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++++|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999999999876 67889999999999999 7888876 34889999999999998873
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.5e-15 Score=113.27 Aligned_cols=136 Identities=17% Similarity=0.274 Sum_probs=113.3
Q ss_pred ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccc-hhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEecc
Q 039257 68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIA-DGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDIS 144 (210)
Q Consensus 68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~ 144 (210)
-+.++++++.++.+|... ...++.|+++ ++.++.++ ...|..+++|++|++++| .++ ++ ..+.++++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI-PQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccCC-CCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 357899999998887642 3467899999 89999874 455789999999999999 999 75 589999999999999
Q ss_pred CCcCcccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 145 QNAIEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 145 ~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
+|.++.+|. .+..+++|++|++++| .+..+++..+..+++|++|++++|.+.+ +++..|..+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l 152 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTL 152 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCC
Confidence 999998865 4789999999999999 7888865559999999999999999855 444555543
No 53
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=1.5e-15 Score=109.28 Aligned_cols=130 Identities=18% Similarity=0.275 Sum_probs=105.5
Q ss_pred ccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccC
Q 039257 68 VRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQ 145 (210)
Q Consensus 68 l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~ 145 (210)
.+.+++.++.++.+|.. ..++++.|+++ ++.++.+++..+..+++|++|++++| .++ +| ..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 35667777777766643 23678899998 88888888776788999999999999 888 75 4568889999999999
Q ss_pred CcCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 146 NAIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 146 ~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 998887764 578899999999999 7888888756889999999999999877665
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.66 E-value=1.2e-15 Score=125.08 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=119.9
Q ss_pred CCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEE
Q 039257 66 ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLL 141 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L 141 (210)
..++.+++.+|.+..+... ..+++|+.|+++ ++.+..+++..+..+++|++|++++| .++ + |..+.++++|++|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA-QNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECC-CCcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence 5799999999999875433 778999999999 88999887766899999999999999 998 6 6888999999999
Q ss_pred eccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcch
Q 039257 142 DISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKV 202 (210)
Q Consensus 142 ~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~ 202 (210)
++++|.++.+ |..+..+++|++|++++| .++.+|...+..+++|+.|++++|++.+..|.
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ECCCCcccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 9999999976 678899999999999999 88999887678999999999999999988874
No 55
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=1.7e-15 Score=128.51 Aligned_cols=143 Identities=20% Similarity=0.337 Sum_probs=126.7
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..+..++.+..++.|+.|++++|.+..++....+++|+.|+++ .+.+..++. +..+++|+.|++++| .++
T Consensus 47 ~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~l~~--l~~l~~L~~L~Ls~N-~l~ 122 (605)
T 1m9s_A 47 QIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD-ENKIKDLSS--LKDLKKLKSLSLEHN-GIS 122 (605)
T ss_dssp CCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC-SSCCCCCTT--STTCTTCCEEECTTS-CCC
T ss_pred EEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc-CCCCCCChh--hccCCCCCEEEecCC-CCC
Confidence 3456677888888888999999999999999988777889999999999 888988774 889999999999999 998
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++| .+..+++ +..+++|+.|++++|.+.+.
T Consensus 123 ~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 123 DIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCc-cccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 75 588899999999999999988 67889999999999999 8888876 89999999999999988553
No 56
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2e-16 Score=113.88 Aligned_cols=129 Identities=21% Similarity=0.249 Sum_probs=110.5
Q ss_pred cCCCCccEEEeecccccccCCCCCCC-CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccc-cCCCcCC
Q 039257 63 KEWENVRRLSLMQNQIETLSEVPTCP-HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGM-SKLGSLQ 139 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~-~~l~~L~ 139 (210)
....+++.|++.+|.++.++....+. +|+.|+++ ++.++.++. +..+++|++|++++| .++ +|..+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLDG--FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEECC--CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECC-CCCCCcccc--cccCCCCCEEECCCC-cccccCcchhhcCCCCC
Confidence 34468999999999999887665544 99999999 888988843 889999999999999 999 87554 8899999
Q ss_pred EEeccCCcCcccch--hhhcCCCCcEEEccCCCCCCCCCcc---cccCCCCCCeEEeecccc
Q 039257 140 LLDISQNAIEELPE--ELKLLINLTCLNLRGTGQLNKIPRQ---LISNFSRLRGLRKFITCA 196 (210)
Q Consensus 140 ~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l~~~~~ 196 (210)
+|++++|.++.+|. .+..+++|+.|++++| .+..+|.. .++.+++|+.|++++|..
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999998887 7889999999999999 77888863 378899999999988875
No 57
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=6.6e-16 Score=123.38 Aligned_cols=149 Identities=23% Similarity=0.299 Sum_probs=127.9
Q ss_pred EEEecCCCCccCCCc--c-CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 48 FLVCAGAGLEEAPDV--K-EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~--~-~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
.+.+.++.++.++.. . .+.+|+.|++++|.++.++.. ..+++|+.|+++ +|.++.+++..|.++++|++|++++
T Consensus 43 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~ 121 (361)
T 2xot_A 43 LLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SNHLHTLDEFLFSDLQALEVLLLYN 121 (361)
T ss_dssp EEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CCcCCcCCHHHhCCCcCCCEEECCC
Confidence 567777777777642 2 678999999999999988753 788999999999 8999999987789999999999999
Q ss_pred cccee-e-cccccCCCcCCEEeccCCcCcccchhh----hcCCCCcEEEccCCCCCCCCCcccccCCCC--CCeEEeecc
Q 039257 123 CWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEEL----KLLINLTCLNLRGTGQLNKIPRQLISNFSR--LRGLRKFIT 194 (210)
Q Consensus 123 ~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~--L~~L~l~~~ 194 (210)
| .++ + |..+.++++|++|++++|.++.+|..+ ..+++|+.|++++| .++.+|...+..++. ++.|++++|
T Consensus 122 N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 122 N-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp S-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred C-cccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCC
Confidence 9 999 6 688999999999999999999998765 57999999999999 899999766778877 489999999
Q ss_pred ccCCC
Q 039257 195 CASSQ 199 (210)
Q Consensus 195 ~~~~~ 199 (210)
++..+
T Consensus 200 ~~~C~ 204 (361)
T 2xot_A 200 PLECD 204 (361)
T ss_dssp CEECC
T ss_pred CccCC
Confidence 98654
No 58
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.65 E-value=6.4e-16 Score=129.51 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=125.2
Q ss_pred EEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
..+.+..++.+|..- .+.+++|++++|.++.++. ...+++|++|+++ ++.+..+++..|..+++|++|++++| .+
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCC-cc
Confidence 455677888888633 3789999999999988643 3788999999999 88898888766899999999999999 99
Q ss_pred e-ec-ccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 127 K-FL-VGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 127 ~-l~-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
+ ++ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|...++.+++|++|++++|.+.+..|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 8 65 558999999999999999884 467788999999999999955788876558899999999999998865444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=121.77 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=127.4
Q ss_pred cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
..+.+.+..++.++. +..+++++.|++++|.++.++. ...+++|++|+++ ++.++.++...+.++++|++|++++
T Consensus 55 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~ 133 (353)
T 2z80_A 55 KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS-YNYLSNLSSSWFKPLSSLTFLNLLG 133 (353)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCSSCCHHHHTTCTTCSEEECTT
T ss_pred cEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC-CCcCCcCCHhHhCCCccCCEEECCC
Confidence 356677777777765 6778899999999999988754 3788999999999 9999999988789999999999999
Q ss_pred cccee-ecc--cccCCCcCCEEeccCC-cCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 123 CWNLK-FLV--GMSKLGSLQLLDISQN-AIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 123 ~~~~~-l~~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
| .++ +|. .+.++++|++|++++| .++.++ ..+..+++|+.|++++| .+..++...++.+++|++|++++|.+
T Consensus 134 n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l- 210 (353)
T 2z80_A 134 N-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQH- 210 (353)
T ss_dssp C-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSCS-
T ss_pred C-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCCCcc-
Confidence 9 999 875 7889999999999998 577664 57889999999999999 67666433488899999999988887
Q ss_pred CCcchhh
Q 039257 198 SQLKVST 204 (210)
Q Consensus 198 ~~~~~~~ 204 (210)
+.++...
T Consensus 211 ~~~~~~~ 217 (353)
T 2z80_A 211 ILLLEIF 217 (353)
T ss_dssp TTHHHHH
T ss_pred ccchhhh
Confidence 4455443
No 60
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=6.1e-15 Score=116.79 Aligned_cols=142 Identities=19% Similarity=0.273 Sum_probs=103.5
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..+..++.+..++++++|++++|.++.++....+++|++|+++ ++.++.++. +..+++|++|++++| .++
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 4566777777888888888888888888888877767778888888888 777877764 788888888888888 777
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
++. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 124 ~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 124 DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCccc
Confidence 665 66777778888777743333334666677777777766 5555554 566666666666666653
No 61
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.5e-15 Score=128.80 Aligned_cols=140 Identities=15% Similarity=0.213 Sum_probs=99.7
Q ss_pred CCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCC
Q 039257 64 EWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQ 139 (210)
Q Consensus 64 ~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~ 139 (210)
.+.+++.+++.++.+..+|.. ..+++|++|+++ ++.+..+++..|..+++|++|++++| .++ + |..++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 345677778887777777664 557778888887 77777777655777788888888888 777 5 45567778888
Q ss_pred EEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 140 LLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
+|++++|.++.+|..+ +++++|++|++++| .+..+++..++.+++|++|++++|.+.+ ++...|++
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~ 193 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTH-VDLSLIPS 193 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSB-CCGGGCTT
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCC-cChhhhhh
Confidence 8888888777777653 67778888888887 6666665457777888888887777643 34444443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.2e-15 Score=119.71 Aligned_cols=130 Identities=16% Similarity=0.132 Sum_probs=104.8
Q ss_pred CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHh-cCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257 65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFF-QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL 140 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 140 (210)
+++++.|++.+|.++.++.. ..+++|+.|+++ ++.+..+++..+ ..+++|++|++++| .++ ++.. ..+++|++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECC-CCCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCE
Confidence 45677777888777766443 567888999998 788887654434 46888999999999 888 7543 35888999
Q ss_pred EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
|++++|.++.+|..+..+++|+.|++++| .++.+|.. +..+++|+.|++++|++...
T Consensus 196 L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCCBHH
T ss_pred EECCCCcCCcchhhhcccCcccEEECcCC-cccchhhH-hhcCCCCCEEEccCCCccCc
Confidence 99999999988888889999999999999 88889886 88899999999999998633
No 63
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.64 E-value=6e-15 Score=108.81 Aligned_cols=134 Identities=22% Similarity=0.335 Sum_probs=113.1
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~ 146 (210)
+.++..++.++.+|... .++++.|+++ ++.++.++...+..+++|++|++++| .++ +| ..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 45677777777776542 4689999999 88999999877889999999999999 999 75 55688999999999999
Q ss_pred cCcccchh-hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 147 AIEELPEE-LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 147 ~l~~lp~~-~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++++|.+. .++...|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~ 146 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 146 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhcc
Confidence 99988765 589999999999999 888888866889999999999999885 455555554
No 64
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=124.21 Aligned_cols=146 Identities=21% Similarity=0.248 Sum_probs=90.6
Q ss_pred EEEecCCCCccCC--CccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 48 FLVCAGAGLEEAP--DVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 48 ~~~~~~~~~~~~~--~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
.+.+.+..++.++ .+..+++|+.|++++|.+..+.. ...+++|+.|+++ .+.++.++...|.++++|++|++++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n 114 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR-SNRLKLIPLGVFTGLSNLTKLDISEN 114 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCTTSSTTCTTCCEEECTTS
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC-CCcCCccCcccccCCCCCCEEECCCC
Confidence 3455555555553 35556677777777777766532 2566777777777 66677776655666777777777777
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecccc
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
.+. + |..+.++++|++|++++|.++.+ |..+..+++|+.|++++| .++.+|...+..+++|+.|++++|.+
T Consensus 115 -~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 115 -KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp -CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred -ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence 666 3 55666666677777766666644 334556666666666666 55555544455555555555555554
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.64 E-value=4.9e-15 Score=117.36 Aligned_cols=152 Identities=16% Similarity=0.248 Sum_probs=96.7
Q ss_pred EecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e
Q 039257 50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F 128 (210)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l 128 (210)
.+.+..+..++.+..++.++.+++.+|.+..++....+++|+.|+++ ++.+..+++ +..+++|++|++++| .++ +
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~ 258 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIG-NNKITDLSP--LANLSQLTWLEIGTN-QISDI 258 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCCCC
T ss_pred EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEcc-CCccCCCcc--hhcCCCCCEEECCCC-ccCCC
Confidence 33344444444444444555555555554444334556667777777 666666665 567777777777777 666 6
Q ss_pred cccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
+ .+..+++|++|++++|.++.+| .+..+++|+.|++++| .+...+...++.+++|++|++++|.+.+..|...+++|
T Consensus 259 ~-~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L 335 (347)
T 4fmz_A 259 N-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKM 335 (347)
T ss_dssp G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTC
T ss_pred h-hHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhcc
Confidence 3 4667777777777777777663 4667777888888887 56655544477788888888888887665554444443
No 66
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=124.77 Aligned_cols=113 Identities=19% Similarity=0.246 Sum_probs=66.6
Q ss_pred CCCCccEEEcccCCCCcc-cchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCEEeccCCcCcccchhhhcCCCCc
Q 039257 86 TCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLT 162 (210)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~ 162 (210)
.+++|++|+++ ++.+.. +|...+..+++|+.|++++| .++ +|..+. ++|++|++++|.++.+|..+..+++|+
T Consensus 372 ~l~~L~~L~Ls-~N~l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 372 QMKSLQQLDIS-QNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQ 447 (520)
T ss_dssp TCTTCCEEECC-SSCCBCCGGGCSCCCCTTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred hCCCCCEEECC-CCcCCcccccchhccCccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCC
Confidence 34444444444 444443 44333344444444444444 443 333222 466777777777777777667777777
Q ss_pred EEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257 163 CLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS 203 (210)
Q Consensus 163 ~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 203 (210)
+|++++| .++.+|...+..+++|+.|++++|++.++.+..
T Consensus 448 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 448 ELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred EEECCCC-cCCccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 7777777 667777654667777777777777776655443
No 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.2e-16 Score=109.08 Aligned_cols=122 Identities=25% Similarity=0.299 Sum_probs=94.6
Q ss_pred CCccEEEeeccccc--ccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--ecccccCCCcCCE
Q 039257 66 ENVRRLSLMQNQIE--TLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLGSLQL 140 (210)
Q Consensus 66 ~~l~~L~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~ 140 (210)
++++.|++++|.+. .++.. ..+++|+.|+++ ++.++.+ .. +..+++|++|++++| .++ +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~-~~-~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI-AN-LPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC-TT-CCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc-hh-hhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 57888888888887 56655 677888888888 7778777 32 778888888888888 777 5666667888888
Q ss_pred EeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCc---ccccCCCCCCeEEee
Q 039257 141 LDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPR---QLISNFSRLRGLRKF 192 (210)
Q Consensus 141 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~---~~~~~l~~L~~L~l~ 192 (210)
|++++|.++.+| ..++.+++|++|++++| .++.+|. ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 888888888765 67788888888888888 6777765 347778888888764
No 68
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=4.3e-15 Score=126.03 Aligned_cols=134 Identities=20% Similarity=0.184 Sum_probs=111.6
Q ss_pred EEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCc
Q 039257 70 RLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNA 147 (210)
Q Consensus 70 ~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~ 147 (210)
..+-++.+++.+|..- -+.++.|+++ +|.++.+++..|.++++|++|++++| .++ +| ..|.++++|++|++++|+
T Consensus 35 ~~~c~~~~l~~vP~~l-p~~~~~LdLs-~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNL-PFSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCC-CcCCCEEEee-CCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 3444455666676542 1479999999 99999999877999999999999999 999 85 678999999999999999
Q ss_pred Ccccch-hhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 148 IEELPE-ELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 148 l~~lp~-~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
++.+|. .+.++++|++|++++| .++.+|...++++++|++|++++|.+.+...+..|..
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~ 171 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 171 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhcc
Confidence 999885 4689999999999999 8899987668999999999999999865433344443
No 69
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=7.7e-16 Score=133.22 Aligned_cols=114 Identities=20% Similarity=0.205 Sum_probs=104.8
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcE
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTC 163 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 163 (210)
..+..|+.|+++ ++.+..++.. +..+++|++|++++| .++ +|..++++.+|++|++++|.++.+|..++.+++|++
T Consensus 221 ~~l~~L~~L~Ls-~n~l~~l~~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLS-NLQIFNISAN-IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECT-TSCCSCCCGG-GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECC-CCCCCCCChh-hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 667899999999 8889999988 558999999999999 999 999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchh
Q 039257 164 LNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVS 203 (210)
Q Consensus 164 L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~ 203 (210)
|++++| .++.+|.. ++.+++|++|++++|.+.+.+|..
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCSHHHHH
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccCCCChHH
Confidence 999999 88999987 999999999999999997766543
No 70
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=1.1e-14 Score=120.07 Aligned_cols=143 Identities=19% Similarity=0.267 Sum_probs=83.9
Q ss_pred EecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e
Q 039257 50 VCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F 128 (210)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l 128 (210)
.+.+..+..++.+..+++++.|++.+|.+..++....+++|+.|+++ ++.+..+++ +..+++|+.|++++| .++ +
T Consensus 227 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~ 302 (466)
T 1o6v_A 227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG-ANQISNISP--LAGLTALTNLELNEN-QLEDI 302 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECC-SSCCCCCGG--GTTCTTCSEEECCSS-CCSCC
T ss_pred ECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECC-CCccCcccc--ccCCCccCeEEcCCC-cccCc
Confidence 33444444444444455555555555555544444455566666666 555555554 555666666666666 555 4
Q ss_pred cccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 129 LVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
+. ++.+++|++|++++|.++..+. +..+++|+.|++++| .+..++. +..+++|+.|++++|.+.+..|
T Consensus 303 ~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 303 SP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVSS--LANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp GG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCBCGG
T ss_pred hh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCchh--hccCCCCCEEeCCCCccCccch
Confidence 43 5566666666666666665543 556666777777766 5666543 6667777777777777655544
No 71
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=6.5e-15 Score=123.97 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=89.1
Q ss_pred ccCCCCccEEEeecccccccCC----CCCCCCccEEEcccCCCCcc-cchhHhcCCCCCcEEecCCcccee--ecccccC
Q 039257 62 VKEWENVRRLSLMQNQIETLSE----VPTCPHFVTLFLDFNGELKM-IADGFFQLMPSLKVLKMSNCWNLK--FLVGMSK 134 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~ 134 (210)
+..+++++.|++.+|.++.++. ...+++|+.|+++ ++.+.. +|...+..+++|++|++++| .++ +|..+.
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~- 449 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP- 449 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT-TSCCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC-
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC-CCcCCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc-
Confidence 3444555555555555554332 2445556666666 555554 55444555566666666666 554 343332
Q ss_pred CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhh
Q 039257 135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTW 205 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f 205 (210)
++|++|++++|.++.+|..+..+++|+.|++++| .++.+|...+..+++|+.+++++|++.++.+...|
T Consensus 450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 5777888888877778777778888888888888 77778775577788888888888888776654433
No 72
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.62 E-value=3.4e-15 Score=120.23 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=93.4
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS 144 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~ 144 (210)
.+++.|++.+|.+...+....+++|+.|+++ ++.+..+++..+..+++|+.|++++| .++ +|..+..+++|++|+++
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECC
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECC-CCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECC
Confidence 4566677777766665545667777888887 77777665555777788888888887 777 77666777778888888
Q ss_pred CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
+|.++.+|..+..+++|+.|++++| .+..+| +..+++|+.|++++|++...
T Consensus 304 ~n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 304 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCcceecCccccccCcCCEEECCCC-ccceeC---chhhccCCEEEcCCCCccch
Confidence 8877777777777788888888887 666665 46677888888888776543
No 73
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.62 E-value=2.3e-14 Score=112.85 Aligned_cols=140 Identities=14% Similarity=0.226 Sum_probs=91.9
Q ss_pred cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCE
Q 039257 63 KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQL 140 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~ 140 (210)
..+++++.|++.+|.++.++.... ++|+.|+++ ++.++.+++..+..+++|++|++++| .++ + +..+..+++|++
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQGLP-PSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCE
T ss_pred cCCCCcCEEECCCCccccCCcccc-ccCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCE
Confidence 344566666666666665554322 667777777 66666665555677777777777777 777 5 346677777777
Q ss_pred EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccC------CCCCCeEEeeccccCC-Ccchhhhh
Q 039257 141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISN------FSRLRGLRKFITCASS-QLKVSTWE 206 (210)
Q Consensus 141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~------l~~L~~L~l~~~~~~~-~~~~~~f~ 206 (210)
|++++|.++.+|..+..+++|++|++++| .++.+|...+.. .+.++.+++++|++.. .+++..|.
T Consensus 245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp EECCSSCCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred EECCCCcCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccc
Confidence 77777777777777777777777777777 677776544432 3567777777777642 34444554
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.61 E-value=4.8e-15 Score=124.58 Aligned_cols=153 Identities=21% Similarity=0.324 Sum_probs=120.7
Q ss_pred EEecCCCCccCCC-ccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 49 LVCAGAGLEEAPD-VKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
+.+.+..+..++. +..+++++.|++.+|.+...+. ...+++|+.|+++ ++.+...++..+.++++|++|++++|
T Consensus 378 L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n- 455 (570)
T 2z63_A 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGN- 455 (570)
T ss_dssp EECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT-TSCCEECCTTTTTTCTTCCEEECTTC-
T ss_pred EECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc-CCcccccchhhhhcCCcCcEEECcCC-
Confidence 3344444444332 4556778888888888776533 3677889999999 77777766655888999999999999
Q ss_pred cee---ecccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCc
Q 039257 125 NLK---FLVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 125 ~~~---l~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
.+. +|..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .++.+|...+..+++|+.+++++|++.+..
T Consensus 456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 774 788889999999999999998866 678889999999999999 788887766889999999999999998887
Q ss_pred chhh
Q 039257 201 KVST 204 (210)
Q Consensus 201 ~~~~ 204 (210)
+...
T Consensus 535 ~~~~ 538 (570)
T 2z63_A 535 PRID 538 (570)
T ss_dssp TTTH
T ss_pred cchH
Confidence 7543
No 75
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=6.1e-15 Score=125.97 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=12.9
Q ss_pred CCCcCCEEeccCCcCcccchhhhcCCCCcEEEc
Q 039257 134 KLGSLQLLDISQNAIEELPEELKLLINLTCLNL 166 (210)
Q Consensus 134 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 166 (210)
.+++|++|++++|.++.+|..+..+++|+.|++
T Consensus 511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred cCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 333333333333333333333333333444433
No 76
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.61 E-value=2.8e-15 Score=127.02 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=124.0
Q ss_pred cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
..+.+.+..++.++. +..++++++|++++|.++.++.. ..+++|++|+++ ++.+..+++..|.++++|++|++++
T Consensus 35 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT-GNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred CEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC-CCcccccChhhcCCcccCCEEEccC
Confidence 356677777777764 67888999999999999887543 788999999999 8889988666689999999999999
Q ss_pred cccee-ec-ccccCCCcCCEEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCC----eEEeecc
Q 039257 123 CWNLK-FL-VGMSKLGSLQLLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLR----GLRKFIT 194 (210)
Q Consensus 123 ~~~~~-l~-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~----~L~l~~~ 194 (210)
| .++ ++ ..++++.+|++|++++|.++ .+|..++++++|++|++++| .++.++...++.+++|+ ++++++|
T Consensus 114 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 114 T-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp S-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred C-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceeeccCC
Confidence 9 988 64 78999999999999999987 57899999999999999999 77776654455554443 6777777
Q ss_pred ccCCCcchhhh
Q 039257 195 CASSQLKVSTW 205 (210)
Q Consensus 195 ~~~~~~~~~~f 205 (210)
.+. .++...|
T Consensus 192 ~l~-~~~~~~~ 201 (606)
T 3vq2_A 192 PID-FIQDQAF 201 (606)
T ss_dssp CCC-EECTTTT
T ss_pred Ccc-eeCcccc
Confidence 663 3444443
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=9.4e-15 Score=121.75 Aligned_cols=141 Identities=20% Similarity=0.249 Sum_probs=121.2
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|..-. ++++.|++++|.++.++. ...+++|++|+++ ++.++.+++..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC-
Confidence 467888888998886433 789999999999988764 3789999999999 88999887666999999999999999
Q ss_pred cee-ecccccCCCcCCEEeccCCcCcc--cchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCC--CeEEeecccc
Q 039257 125 NLK-FLVGMSKLGSLQLLDISQNAIEE--LPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL--RGLRKFITCA 196 (210)
Q Consensus 125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~ 196 (210)
.++ +|.. .+++|++|++++|.++. +|..++++++|++|++++| .+... .+..+++| +.|++++|.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeecccc
Confidence 999 9876 89999999999999885 5789999999999999999 66552 26778888 9999999988
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.60 E-value=2.9e-14 Score=112.29 Aligned_cols=102 Identities=20% Similarity=0.332 Sum_probs=51.2
Q ss_pred EEecCCCCccCCC--ccCCCCccEEEeeccccccc-CCC-CCCCCccEEEcccCCCC---------------------cc
Q 039257 49 LVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETL-SEV-PTCPHFVTLFLDFNGEL---------------------KM 103 (210)
Q Consensus 49 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l-~~~-~~~~~L~~L~l~~~~~~---------------------~~ 103 (210)
+.+.+..++.++. +..++++++|++++|.+..+ +.. ..+++|++|+++ ++.+ ..
T Consensus 57 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~l~~~~~~~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS-KNQLKELPEKMPKTLQELRVHENEITK 135 (330)
T ss_dssp EECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-SSCCSBCCSSCCTTCCEEECCSSCCCB
T ss_pred EECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC-CCcCCccChhhcccccEEECCCCcccc
Confidence 4455555555542 44555666666666665554 222 444555555555 4444 44
Q ss_pred cchhHhcCCCCCcEEecCCcccee----ecccccCCCcCCEEeccCCcCcccc
Q 039257 104 IADGFFQLMPSLKVLKMSNCWNLK----FLVGMSKLGSLQLLDISQNAIEELP 152 (210)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~----l~~~~~~l~~L~~L~l~~~~l~~lp 152 (210)
+++..+.++++|++|++++| .++ .+..+.++++|++|++++|.++.+|
T Consensus 136 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 136 VRKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp BCHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred cCHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 44444555555666665555 443 2344444555555555554444443
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.60 E-value=1.4e-14 Score=121.93 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=118.6
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|..- .++++.|++++|.++.++. ...+++|++|+++ ++.++.+++..|.++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCC-
Confidence 57788888999888633 3789999999999988764 3888999999999 88899887766899999999999999
Q ss_pred cee-ecccccCCCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCC--CeEEeecccc
Q 039257 125 NLK-FLVGMSKLGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRL--RGLRKFITCA 196 (210)
Q Consensus 125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L--~~L~l~~~~~ 196 (210)
.++ +|.. .+++|++|++++|.++.+| ..++++++|++|++++| .+...+ +..+++| +.|++++|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 999 9876 8899999999999988754 78899999999999998 565532 4555666 9999999887
No 80
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=3.8e-15 Score=116.75 Aligned_cols=150 Identities=16% Similarity=0.288 Sum_probs=83.5
Q ss_pred EEEecCCCCc-cCCC-ccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCC-CCcEEecC
Q 039257 48 FLVCAGAGLE-EAPD-VKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMP-SLKVLKMS 121 (210)
Q Consensus 48 ~~~~~~~~~~-~~~~-~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~-~L~~L~l~ 121 (210)
.+.+.+..+. .+|. +..++++++|++++|.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +..+. .|++|+++
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~-l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDS-YGSFSKLFTSMTIS 182 (313)
T ss_dssp EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGG-GGCCCTTCCEEECC
T ss_pred EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHH-HhhhhhcCcEEECc
Confidence 3344444444 3332 4555667777777776663 3333 556666666666 55555 44444 45554 56666666
Q ss_pred Ccccee--eccc-----------------------ccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCC-CC
Q 039257 122 NCWNLK--FLVG-----------------------MSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLN-KI 175 (210)
Q Consensus 122 ~~~~~~--l~~~-----------------------~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~l 175 (210)
+| .++ +|.. +..+++|++|++++|.++..+..+..+++|++|++++| .+. .+
T Consensus 183 ~N-~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~ 260 (313)
T 1ogq_A 183 RN-RLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTL 260 (313)
T ss_dssp SS-EEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECC
T ss_pred CC-eeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-cccCcC
Confidence 55 544 3444 44455555555555555433334555566666666666 443 55
Q ss_pred CcccccCCCCCCeEEeeccccCCCcch
Q 039257 176 PRQLISNFSRLRGLRKFITCASSQLKV 202 (210)
Q Consensus 176 p~~~~~~l~~L~~L~l~~~~~~~~~~~ 202 (210)
|.. +..+++|++|++++|.+.+.+|.
T Consensus 261 p~~-l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 261 PQG-LTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CGG-GGGCTTCCEEECCSSEEEEECCC
T ss_pred ChH-HhcCcCCCEEECcCCcccccCCC
Confidence 554 66666777777777766655554
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=5.4e-15 Score=122.57 Aligned_cols=128 Identities=16% Similarity=0.137 Sum_probs=100.8
Q ss_pred CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhc-CCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257 65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQ-LMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL 140 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 140 (210)
++.++.|++++|.+..++.. ..+++|+.|+++ +|.+..+++..+. .+++|++|++++| .++ +|. ...+++|++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK-LNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-QVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT-TSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC-CCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-cccCCCCCE
Confidence 45677788888777765432 567888888888 7777765443343 6888888888888 888 754 335888999
Q ss_pred EeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 141 LDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 141 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
|++++|.++.+|..+..+++|+.|++++| .+..+|.. ++.+++|+.|++++|++.
T Consensus 196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EECCSSCCCEECGGGGGGTTCSEEECTTS-CCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred EECCCCCCCCCCHhHcCCCCccEEEecCC-cCcccchh-hccCCCCCEEEcCCCCCc
Confidence 99999988888888888899999999998 78888886 888899999999998886
No 82
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.60 E-value=1.4e-14 Score=122.81 Aligned_cols=150 Identities=17% Similarity=0.158 Sum_probs=93.8
Q ss_pred EEecCCCCccCCC--ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 49 LVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 49 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
+.+.+..+..++. +..+++++.|++++|.++.+|.. ..+++|++|+++ ++.+..+++..+..+++|++|++++| .
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~ 336 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLS-ANKFENLCQISASNFPSLTHLSIKGN-T 336 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECT-TCCCSBGGGGCGGGCTTCSEEECCSC-S
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECc-cCCcCcCchhhhhccCcCCEEECCCC-C
Confidence 3455556665554 55667788888888888777665 667788888888 77777665544667777777777777 5
Q ss_pred ee--ec-ccccCCCcCCEEeccCCcCccc---chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 126 LK--FL-VGMSKLGSLQLLDISQNAIEEL---PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 126 ~~--l~-~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
+. +| ..+..+++|++|++++|.++.. |..+..+++|+.|++++| .+..++...++.+++|++|++++|.+.+.
T Consensus 337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 415 (606)
T 3t6q_A 337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVK 415 (606)
T ss_dssp SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence 54 43 3466666666666666666544 345566666666666666 44444333355556666666665555444
Q ss_pred cc
Q 039257 200 LK 201 (210)
Q Consensus 200 ~~ 201 (210)
.+
T Consensus 416 ~~ 417 (606)
T 3t6q_A 416 DA 417 (606)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 83
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=2.3e-14 Score=118.08 Aligned_cols=138 Identities=25% Similarity=0.322 Sum_probs=61.3
Q ss_pred ecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec
Q 039257 51 CAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL 129 (210)
Q Consensus 51 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~ 129 (210)
+.+..+..++.+..+++++.|++.+|.+..++....+++|+.|+++ ++.++.++. +..+++|++|++++| .++ ++
T Consensus 184 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~ 259 (466)
T 1o6v_A 184 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN-GNQLKDIGT--LASLTNLTDLDLANN-QISNLA 259 (466)
T ss_dssp CCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECC-SSCCCCCGG--GGGCTTCSEEECCSS-CCCCCG
T ss_pred CcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECC-CCCcccchh--hhcCCCCCEEECCCC-ccccch
Confidence 3334444444444444555555555544443333334444444444 444444332 344445555555554 444 33
Q ss_pred ccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 130 VGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
. +..+++|++|++++|.++.+|. +..+++|+.|++++| .+..++. ++.+++|+.|++++|.+.
T Consensus 260 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~L~~n~l~ 322 (466)
T 1o6v_A 260 P-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN-QLEDISP--ISNLKNLTYLTLYFNNIS 322 (466)
T ss_dssp G-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred h-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCC-cccCchh--hcCCCCCCEEECcCCcCC
Confidence 2 4444444444444444444433 344444444444444 3444333 344444444444444443
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=6.8e-15 Score=124.77 Aligned_cols=128 Identities=21% Similarity=0.206 Sum_probs=98.3
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS 144 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~ 144 (210)
..++.|++.+|.+...+....+++|+.|+++ ++.+..+++..|..+++|++|++++| .++ +|..++.+++|++|+++
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLS-YNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECC-SSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECC-CCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECC
Confidence 4577777777777665555677888888888 77777665555778888888888888 888 77777778888888888
Q ss_pred CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
+|.++.+|..+..+++|+.|++++| .+..+| +..+++|+.|++++|++.+.
T Consensus 310 ~N~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 310 HNHLLHVERNQPQFDRLENLYLDHN-SIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp SSCCCCCGGGHHHHTTCSEEECCSS-CCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCccCcccccCCCCCEEECCCC-CCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 8888888877888888888888888 677665 56778888888888887544
No 85
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.59 E-value=2.9e-14 Score=124.20 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=40.3
Q ss_pred CCcEEecCCcccee--ecccccCCCcCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEE
Q 039257 114 SLKVLKMSNCWNLK--FLVGMSKLGSLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLR 190 (210)
Q Consensus 114 ~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~ 190 (210)
+|++|++++| .++ +|..+++++.|++|++++|.++ .+|..++.+++|+.|++++|...+.+|.. ++.+++|++|+
T Consensus 633 ~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEID 710 (768)
T ss_dssp CCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEE
T ss_pred cccEEECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEE
Confidence 3444444444 443 3444444444445555554444 44444455555555555555222244443 44555555555
Q ss_pred eeccccCCCcc
Q 039257 191 KFITCASSQLK 201 (210)
Q Consensus 191 l~~~~~~~~~~ 201 (210)
+++|++.+.+|
T Consensus 711 ls~N~l~g~iP 721 (768)
T 3rgz_A 711 LSNNNLSGPIP 721 (768)
T ss_dssp CCSSEEEEECC
T ss_pred CcCCcccccCC
Confidence 55555544444
No 86
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=7.4e-15 Score=115.07 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=63.6
Q ss_pred CccCCCCccEEEeec-ccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccC
Q 039257 61 DVKEWENVRRLSLMQ-NQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSK 134 (210)
Q Consensus 61 ~~~~~~~l~~L~l~~-~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~ 134 (210)
.+..++.++.|++++ |.+.+ +|.. ..+++|++|+++ ++.+. .+|.. +..+++|++|++++| .++ +|..+..
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~ 147 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT-HTNVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISS 147 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE-EECCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGG
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc-CCeeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhc
Confidence 355566777777773 55543 3332 556666666666 55555 44443 566666666666666 665 4566666
Q ss_pred CCcCCEEeccCCcCc-ccchhhhcCC-CCcEEEccCC
Q 039257 135 LGSLQLLDISQNAIE-ELPEELKLLI-NLTCLNLRGT 169 (210)
Q Consensus 135 l~~L~~L~l~~~~l~-~lp~~~~~l~-~L~~L~l~~~ 169 (210)
+++|++|++++|.++ .+|..++.++ +|+.|++++|
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 666666666666665 5555555555 5555555555
No 87
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=4.8e-14 Score=115.99 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=105.9
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..++.+|.+..++++++|++++|.+++++ ...+++|+.|+++ ++.++.++ +..+++|++|++++| .++
T Consensus 46 ~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L~~N-~l~ 119 (457)
T 3bz5_A 46 SLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNCDTN-KLT 119 (457)
T ss_dssp EEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEECCSS-CCS
T ss_pred EEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEECCCC-cCC
Confidence 55677778888888888889999999999888875 5678889999998 88888775 678888999999998 888
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
+| ++.+++|++|++++|.++.+| ++.+++|+.|++++|..++.++ ++.+++|++|++++|.+.+
T Consensus 120 ~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC
T ss_pred eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce
Confidence 76 778888888888888888764 5667777777777775555552 5566666666666666533
No 88
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.58 E-value=1.2e-14 Score=126.64 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=105.8
Q ss_pred ccCCCCccEEEeecccccc-cCCC-CCCCCccEEEcccCCCCc-ccchhHhcCCCCCcEEecCCcccee--ecccccCCC
Q 039257 62 VKEWENVRRLSLMQNQIET-LSEV-PTCPHFVTLFLDFNGELK-MIADGFFQLMPSLKVLKMSNCWNLK--FLVGMSKLG 136 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~-l~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~~l~ 136 (210)
+..+++++.|++++|.+.+ +|.. ..+++|+.|+++ .+.+. .+|.. +..+++|++|++++| .++ +|..+++++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~ 490 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW-LNMLEGEIPQE-LMYVKTLETLILDFN-DLTGEIPSGLSNCT 490 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCCSCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCT
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC-CCcccCcCCHH-HcCCCCceEEEecCC-cccCcCCHHHhcCC
Confidence 4455667777777777664 3333 667778888888 66666 44444 778888888888888 777 677888888
Q ss_pred cCCEEeccCCcCc-ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257 137 SLQLLDISQNAIE-ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE 206 (210)
Q Consensus 137 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~ 206 (210)
+|++|++++|.++ .+|..++.+++|++|++++|...+.+|.. ++.+++|+.|++++|.+.+.+|...|.
T Consensus 491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhc
Confidence 8888888888877 67888888888888888888433467765 888888888888888888888876553
No 89
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.9e-14 Score=112.41 Aligned_cols=143 Identities=24% Similarity=0.354 Sum_probs=101.5
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|... .+.++.|++++|.+..++. ...+++|++|+++ ++.++.+++..+.++++|++|++++|
T Consensus 36 ~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLV-NNKISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECC-CCccCccCHhHhhCcCCCCEEECCCC-
Confidence 34667777777777533 3678888888888887654 3778888888888 77888776655788888888888888
Q ss_pred cee-ecccccCCCcCCEEeccCCcCcccch-hhhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeecccc
Q 039257 125 NLK-FLVGMSKLGSLQLLDISQNAIEELPE-ELKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 125 ~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
.++ +|..+. ++|++|++++|.++.+|. .+..+++|+.|++++| .++. ++...+..+ +|++|++++|.+
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888 776554 678888888888887764 4677888888888887 5542 222224444 555555555544
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.3e-14 Score=102.17 Aligned_cols=129 Identities=25% Similarity=0.305 Sum_probs=110.6
Q ss_pred cEEEecCCCCc--cCCCc-cCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 47 NFLVCAGAGLE--EAPDV-KEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 47 ~~~~~~~~~~~--~~~~~-~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
..+.+.+..+. .+|.. ..+++++.|++.+|.++.+.....+++|+.|+++ ++.+....+..+..+++|++|++++|
T Consensus 27 ~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N 105 (168)
T 2ell_A 27 RELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELS-ENRIFGGLDMLAEKLPNLTHLNLSGN 105 (168)
T ss_dssp SEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEE-SCCCCSCCCHHHHHCTTCCEEECBSS
T ss_pred CEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECc-CCcCchHHHHHHhhCCCCCEEeccCC
Confidence 45667777777 67765 7788999999999999988555889999999999 88888844444778999999999999
Q ss_pred ccee-ec--ccccCCCcCCEEeccCCcCcccch----hhhcCCCCcEEEccCCCCCCCCCcc
Q 039257 124 WNLK-FL--VGMSKLGSLQLLDISQNAIEELPE----ELKLLINLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 124 ~~~~-l~--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (210)
.++ +| ..+..+++|++|++++|.++.+|. .+..+++|++|++++| ...++|..
T Consensus 106 -~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 106 -KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp -SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCSS
T ss_pred -ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcccc
Confidence 999 76 788999999999999999998886 7889999999999999 77888763
No 91
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=114.10 Aligned_cols=126 Identities=22% Similarity=0.228 Sum_probs=61.1
Q ss_pred CCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcc---cchh-HhcCCCCCcEEecCCcccee-ec----ccccC
Q 039257 66 ENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM---IADG-FFQLMPSLKVLKMSNCWNLK-FL----VGMSK 134 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~-~~~~l~~L~~L~l~~~~~~~-l~----~~~~~ 134 (210)
+++++|++++|.+..++.. ..+++|+.|+++ ++.+.. ++.. .+..+++|++|++++| .++ ++ ..+.+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~ 226 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAA 226 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhc
Confidence 4555666666655554421 445555555555 444321 1111 0145555555555555 554 32 11234
Q ss_pred CCcCCEEeccCCcCcccc--hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 135 LGSLQLLDISQNAIEELP--EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+++|++|++++|.++..+ ..+..+++|++|++++| .++.+|.. +. ++|++|++++|.+.
T Consensus 227 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LP--AKLSVLDLSYNRLD 287 (312)
T ss_dssp TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CC--SEEEEEECCSSCCC
T ss_pred CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh-cc--CCceEEECCCCCCC
Confidence 455555555555555432 22334455555555555 45555543 32 45555555555553
No 92
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.7e-14 Score=126.66 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=12.0
Q ss_pred CCcCCEEeccCCcCcccchhhhcCCCCcEEEc
Q 039257 135 LGSLQLLDISQNAIEELPEELKLLINLTCLNL 166 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 166 (210)
+++|+.|++++|.++.+|..++.+++|+.|++
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~L 783 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGI 783 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGGCTTCCEEEC
T ss_pred CCCcCEEEeCCCCCCccchhhhcCCCCCEEEC
Confidence 33333333333333333333333333333333
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.58 E-value=1e-14 Score=114.01 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcc---cchh-HhcCCCCCcEEecCCcccee-ecc----ccc
Q 039257 65 WENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKM---IADG-FFQLMPSLKVLKMSNCWNLK-FLV----GMS 133 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~---~~~~-~~~~l~~L~~L~l~~~~~~~-l~~----~~~ 133 (210)
++++++|++++|.+..++.. ..+++|++|+++ +|.+.. ++.. .+..+++|++|++++| .++ ++. .++
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 45666777777766655432 456666677766 554432 2111 1245666666666666 665 432 134
Q ss_pred CCCcCCEEeccCCcCccc-chhhhcC---CCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC
Q 039257 134 KLGSLQLLDISQNAIEEL-PEELKLL---INLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS 198 (210)
Q Consensus 134 ~l~~L~~L~l~~~~l~~l-p~~~~~l---~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~ 198 (210)
.+++|++|++++|.++.. |..+..+ ++|++|++++| .++.+|.. +. ++|++|++++|.+.+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~-~~--~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG-LP--AKLRVLDLSSNRLNR 286 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC-CC--SCCSCEECCSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh-hc--CCCCEEECCCCcCCC
Confidence 556666666666666644 5444444 46666666666 55566654 32 566666666666644
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=1.6e-14 Score=121.49 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=87.4
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCC------------------CCCCccEEEcccCCCCcccchhHh
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVP------------------TCPHFVTLFLDFNGELKMIADGFF 109 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~------------------~~~~L~~L~l~~~~~~~~~~~~~~ 109 (210)
.+.+.++.++.+| ..+++++.|++++|.++.+|... .+++|+.|+++ +|.++.+|.
T Consensus 84 ~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls-~N~l~~lp~--- 157 (571)
T 3cvr_A 84 VLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINAD-NNQLTMLPE--- 157 (571)
T ss_dssp EEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC-SSCCSCCCC---
T ss_pred EEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCCcCccccEEeCC-CCccCcCCC---
Confidence 3444555555555 33455555555555555444311 34455555555 555555553
Q ss_pred cCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCC-------cEEEccCCCCCCCCCccccc
Q 039257 110 QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINL-------TCLNLRGTGQLNKIPRQLIS 181 (210)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L-------~~L~l~~~~~~~~lp~~~~~ 181 (210)
.+++|++|++++| .++ +|. ++ ++|++|++++|.++.+|. +.. +| +.|++++| .++.+|.. +.
T Consensus 158 -~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~-l~ 227 (571)
T 3cvr_A 158 -LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPEN-IL 227 (571)
T ss_dssp -CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSS-CCCCCCGG-GG
T ss_pred -cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCC-cceecCHH-Hh
Confidence 3456777777777 666 665 44 677888888887777776 433 56 88888888 78888886 66
Q ss_pred CCCCCCeEEeeccccCCCcc
Q 039257 182 NFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 182 ~l~~L~~L~l~~~~~~~~~~ 201 (210)
.+++|+.|++++|++.+.+|
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCH
Confidence 68888899998888866554
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.5e-14 Score=115.00 Aligned_cols=157 Identities=20% Similarity=0.230 Sum_probs=91.6
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCC------------------------
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGEL------------------------ 101 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~------------------------ 101 (210)
.+.|.+.+++.+|..- ...++.|++++|.++.++.. ..+++|++|+++ ++.+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEE-CCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECc-CCCCCCccChhHhhcchhhhhhhcccCC
Confidence 4567777777776421 24567777777777666543 556666666666 4443
Q ss_pred --cccchhHhcCCCCCcEEecCCcccee-ecc--------------------------cccCC-CcCCEEeccCCcCccc
Q 039257 102 --KMIADGFFQLMPSLKVLKMSNCWNLK-FLV--------------------------GMSKL-GSLQLLDISQNAIEEL 151 (210)
Q Consensus 102 --~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~--------------------------~~~~l-~~L~~L~l~~~~l~~l 151 (210)
..+++..|..+++|++|++++| .++ +|. .+..+ ..+++|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 3333333444555555555554 333 221 01111 1344555555555555
Q ss_pred chhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 152 PEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 152 p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
|.......+|+.+++.++..++.+|..++..+++|++|++++|.+ ..+|...|.+|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L 225 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENL 225 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CCCCSSSCTTC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-CccChhhhccc
Confidence 555445556677777654477777776677888888888888877 55666666655
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.57 E-value=3e-14 Score=112.38 Aligned_cols=134 Identities=19% Similarity=0.279 Sum_probs=115.6
Q ss_pred CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEecc
Q 039257 67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDIS 144 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~ 144 (210)
.++.+++.++.++.+|... .++++.|+++ ++.+..+++..+.++++|++|++++| .++ + |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 6899999999998887653 4789999999 88899888766899999999999999 999 6 7889999999999999
Q ss_pred CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCC-Ccchhhhh
Q 039257 145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASS-QLKVSTWE 206 (210)
Q Consensus 145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~-~~~~~~f~ 206 (210)
+|.++.+|..+. ++|++|++++| .+..+|...+..+++|++|++++|.+.. .+.+..|.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 999999987765 89999999999 8889988768999999999999998852 23334443
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=2.3e-14 Score=112.17 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=113.6
Q ss_pred EEEecCCCCc-cCCC-c--cCCCCccEEEeecccccccCCC-CCC-----CCccEEEcccCCCCcccchhHhcCCCCCcE
Q 039257 48 FLVCAGAGLE-EAPD-V--KEWENVRRLSLMQNQIETLSEV-PTC-----PHFVTLFLDFNGELKMIADGFFQLMPSLKV 117 (210)
Q Consensus 48 ~~~~~~~~~~-~~~~-~--~~~~~l~~L~l~~~~~~~l~~~-~~~-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 117 (210)
.+.+.+..+. .+|. + ..+++++.|++++|.+++++.. ..+ ++|++|+++ ++.+..+++..+..+++|++
T Consensus 99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALST 177 (312)
T ss_dssp EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCE
T ss_pred EEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-CCCCccchHHHhccCCCCCE
Confidence 4455555555 3443 2 5678899999999988877543 233 889999999 88888888666888999999
Q ss_pred EecCCcccee----ecccc--cCCCcCCEEeccCCcCcccc---hh-hhcCCCCcEEEccCCCCCCCCC-cccccCCCCC
Q 039257 118 LKMSNCWNLK----FLVGM--SKLGSLQLLDISQNAIEELP---EE-LKLLINLTCLNLRGTGQLNKIP-RQLISNFSRL 186 (210)
Q Consensus 118 L~l~~~~~~~----l~~~~--~~l~~L~~L~l~~~~l~~lp---~~-~~~l~~L~~L~l~~~~~~~~lp-~~~~~~l~~L 186 (210)
|++++| .+. +|..+ +.+++|++|++++|.++.++ .. +..+++|+.|++++| .+...+ ...+..+++|
T Consensus 178 L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 178 LDLSDN-PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp EECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTC
T ss_pred EECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCC
Confidence 999999 654 24444 78889999999999888544 22 357789999999999 666644 2336678999
Q ss_pred CeEEeeccccCCCcchhhh
Q 039257 187 RGLRKFITCASSQLKVSTW 205 (210)
Q Consensus 187 ~~L~l~~~~~~~~~~~~~f 205 (210)
++|++++|.+. .+|...+
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC
T ss_pred CEEECCCCccC-hhhhhcc
Confidence 99999999885 6665544
No 98
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=3e-14 Score=122.36 Aligned_cols=156 Identities=19% Similarity=0.232 Sum_probs=126.9
Q ss_pred cEEEecCCCCccCCC--ccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCC
Q 039257 47 NFLVCAGAGLEEAPD--VKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSN 122 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 122 (210)
..+.+.+..++.++. +..+++++.|++++|.+..++.. ..+++|++|+++ ++.+..+|...|.++++|++|++++
T Consensus 28 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 28 TVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ-HNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp SEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred cEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC-CCccCccChhhhccCCCCCEEECCC
Confidence 356677777777764 67778999999999999887544 678999999999 8889999986689999999999999
Q ss_pred cccee-ec-ccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCCCCCCCCccccc--CCCCCCeEEeeccccC
Q 039257 123 CWNLK-FL-VGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTGQLNKIPRQLIS--NFSRLRGLRKFITCAS 197 (210)
Q Consensus 123 ~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~lp~~~~~--~l~~L~~L~l~~~~~~ 197 (210)
| .++ ++ ..++++++|++|++++|.++.. |..++++++|++|++++| .++.++...+. .+++|++|++++|.+.
T Consensus 107 n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 107 N-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp S-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred C-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCCCccc
Confidence 9 888 64 7889999999999999988855 456789999999999999 77777654343 5689999999999875
Q ss_pred CCcchhhhh
Q 039257 198 SQLKVSTWE 206 (210)
Q Consensus 198 ~~~~~~~f~ 206 (210)
+ +++..|.
T Consensus 185 ~-~~~~~~~ 192 (680)
T 1ziw_A 185 E-FSPGCFH 192 (680)
T ss_dssp C-BCTTGGG
T ss_pred c-cChhhhh
Confidence 4 4444443
No 99
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=9.2e-14 Score=118.68 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=115.0
Q ss_pred EEEecCCCCccCCCccC---CCCccEEEeeccccccc-CCC-C-------CCCCccEEEcccCCCCcccchhHhcCCCCC
Q 039257 48 FLVCAGAGLEEAPDVKE---WENVRRLSLMQNQIETL-SEV-P-------TCPHFVTLFLDFNGELKMIADGFFQLMPSL 115 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~---~~~l~~L~l~~~~~~~l-~~~-~-------~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 115 (210)
.+.+.++.++.+|..-. +.+++.|++++|.+.+. |.. . .+++|+.|+++ ++.++.+|...+..+++|
T Consensus 381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls-~N~l~~lp~~~~~~l~~L 459 (636)
T 4eco_A 381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS-NNQISKFPKELFSTGSPL 459 (636)
T ss_dssp EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC-SSCCCSCCTHHHHTTCCC
T ss_pred EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc-CCccCcCCHHHHccCCCC
Confidence 34455556666664321 22577788888877652 221 2 56689999999 888899998877889999
Q ss_pred cEEecCCcccee-ecccccC-C-------CcCCEEeccCCcCcccchhhh--cCCCCcEEEccCCCCCCCCCcccccCCC
Q 039257 116 KVLKMSNCWNLK-FLVGMSK-L-------GSLQLLDISQNAIEELPEELK--LLINLTCLNLRGTGQLNKIPRQLISNFS 184 (210)
Q Consensus 116 ~~L~l~~~~~~~-l~~~~~~-l-------~~L~~L~l~~~~l~~lp~~~~--~l~~L~~L~l~~~~~~~~lp~~~~~~l~ 184 (210)
++|++++| .++ +|..+.. . ++|++|++++|.++.+|..+. .+++|+.|++++| .++.+|.. ++.++
T Consensus 460 ~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~l~ 536 (636)
T 4eco_A 460 SSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-PLNSS 536 (636)
T ss_dssp SEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGGCS
T ss_pred CEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChh-hhcCC
Confidence 99999999 998 8755443 2 289999999999999998887 9999999999999 77789886 88899
Q ss_pred CCCeEEee------ccccCCCcch
Q 039257 185 RLRGLRKF------ITCASSQLKV 202 (210)
Q Consensus 185 ~L~~L~l~------~~~~~~~~~~ 202 (210)
+|+.|+++ +|.+.+.+|.
T Consensus 537 ~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 537 TLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp SCCEEECCSCBCTTCCBCCCCCCT
T ss_pred CCCEEECCCCcccccCcccccChH
Confidence 99999984 4555555553
No 100
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=2.2e-14 Score=103.19 Aligned_cols=121 Identities=20% Similarity=0.256 Sum_probs=108.1
Q ss_pred cEEEecCCCCccCCCccCCC-CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 47 NFLVCAGAGLEEAPDVKEWE-NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
..+.+.+..++.+|.+..+. +++.|++++|.++.++....+++|+.|+++ ++.++.+++..+..+++|++|++++| .
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN-NNRICRIGEGLDQALPDLTELILTNN-S 99 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECC-SSCCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECC-CCcccccCcchhhcCCCCCEEECCCC-c
Confidence 34567788888888777666 899999999999988666889999999999 99999999876789999999999999 9
Q ss_pred ee-ecc--cccCCCcCCEEeccCCcCcccchh----hhcCCCCcEEEccCC
Q 039257 126 LK-FLV--GMSKLGSLQLLDISQNAIEELPEE----LKLLINLTCLNLRGT 169 (210)
Q Consensus 126 ~~-l~~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~ 169 (210)
++ +|. .++.+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99 886 888999999999999999988875 899999999999998
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.3e-14 Score=120.78 Aligned_cols=106 Identities=20% Similarity=0.237 Sum_probs=91.3
Q ss_pred CccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEcc
Q 039257 89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLR 167 (210)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 167 (210)
.|+.|+++ ++.++.+|. +..+++|+.|++++| .++ +|..++++++|++|++++|.++.+| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls-~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECT-TSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEec-CCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 58889999 888888876 788999999999999 898 8888999999999999999988888 78889999999999
Q ss_pred CCCCCCCC--CcccccCCCCCCeEEeeccccCCCcc
Q 039257 168 GTGQLNKI--PRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 168 ~~~~~~~l--p~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
+| .++.+ |.. ++.+++|+.|++++|.+.+..+
T Consensus 517 ~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS
T ss_pred CC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc
Confidence 99 77777 664 8889999999999998866544
No 102
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=3.4e-14 Score=124.73 Aligned_cols=151 Identities=19% Similarity=0.230 Sum_probs=98.8
Q ss_pred cEEEecCCCCccCCC---ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCC-CcEEecCC
Q 039257 47 NFLVCAGAGLEEAPD---VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPS-LKVLKMSN 122 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~---~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~ 122 (210)
..+.+.++.+..+|. +..+++|+.|++++|.+..+|....+++|+.|+++ ++.+..+|.. +..+++ |+.|++++
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls-~N~l~~lp~~-l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLD-YNQIEEIPED-FCAFTDQVEGLGFSH 628 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECC-SSCCSCCCTT-SCEECTTCCEEECCS
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECc-CCccccchHH-HhhccccCCEEECcC
Confidence 456777778888887 67788888999998888888855778888888888 7778887776 777887 88888888
Q ss_pred cccee-ecccccCCCc--CCEEeccCC-----------------------------cCcccchhhh-cCCCCcEEEccCC
Q 039257 123 CWNLK-FLVGMSKLGS--LQLLDISQN-----------------------------AIEELPEELK-LLINLTCLNLRGT 169 (210)
Q Consensus 123 ~~~~~-l~~~~~~l~~--L~~L~l~~~-----------------------------~l~~lp~~~~-~l~~L~~L~l~~~ 169 (210)
| .++ +|..++.+.. |+.|++++| .++.+|..+. .+++|+.|++++|
T Consensus 629 N-~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 629 N-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp S-CCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC
T ss_pred C-CCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC
Confidence 8 787 7766554432 455555544 4444444432 4555555555555
Q ss_pred CCCCCCCcccccCC-------CCCCeEEeeccccCCCcch
Q 039257 170 GQLNKIPRQLISNF-------SRLRGLRKFITCASSQLKV 202 (210)
Q Consensus 170 ~~~~~lp~~~~~~l-------~~L~~L~l~~~~~~~~~~~ 202 (210)
.+..+|...+... ++|+.|++++|.+. .+|.
T Consensus 708 -~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 708 -LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp -CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred -cCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 4555555322211 15556666555553 4443
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=8.3e-14 Score=101.69 Aligned_cols=121 Identities=25% Similarity=0.331 Sum_probs=107.2
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
..+.+.+..++.+|.. -.+.++.|++.+|.++.++.. ..+++|+.|+++ ++.++.+++..|.++++|++|++++| .
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N-~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLS-NNRISTLSNQSFSNMTQLLTLILSYN-R 89 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECC-CCcCCEeCHhHccCCCCCCEEECCCC-c
Confidence 4678889999999853 236899999999999988754 788999999999 99999999877999999999999999 9
Q ss_pred ee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEccCCC
Q 039257 126 LK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLRGTG 170 (210)
Q Consensus 126 ~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 170 (210)
++ + |..+.++++|++|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 99 6 56799999999999999999988864 7889999999999983
No 104
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=3.6e-14 Score=116.75 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=116.6
Q ss_pred CccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 61 DVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 61 ~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
.+..+++++.|+++++.+++++....+++|+.|+++ ++.++.++ +..+++|++|++++| .++ ++ ++++++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICT-SNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECC-SSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEcc-CCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 455668999999999999998877889999999999 88899886 789999999999999 999 86 88999999
Q ss_pred EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257 140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE 206 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~ 206 (210)
+|++++|.++.+| ++.+++|++|++++| .++.++ ++.+++|++|++++|...+.++...+.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~ 170 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQT 170 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCT
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCC
Confidence 9999999999886 889999999999999 788875 789999999999999776766544333
No 105
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.54 E-value=7.3e-14 Score=117.01 Aligned_cols=133 Identities=21% Similarity=0.274 Sum_probs=113.4
Q ss_pred EEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcC
Q 039257 71 LSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAI 148 (210)
Q Consensus 71 L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l 148 (210)
.+.+++.++.+|... .+.|++|+++ ++.++.+++..|.++++|++|++++| .++ + |..++++++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccC-CCCccEEECc-CCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence 566777888887753 3789999999 88899887665899999999999999 998 6 57899999999999999999
Q ss_pred cccchh-hhcCCCCcEEEccCCCCCCC--CCcccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 149 EELPEE-LKLLINLTCLNLRGTGQLNK--IPRQLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 149 ~~lp~~-~~~l~~L~~L~l~~~~~~~~--lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
+.+|.. ++++++|++|++++| .+.. +|.. ++.+++|++|++++|...+.++...|.++
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred CccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCccccccCHhhhhcc
Confidence 988765 899999999999999 7764 4554 89999999999999997788877666654
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=3.1e-14 Score=99.48 Aligned_cols=110 Identities=24% Similarity=0.309 Sum_probs=96.0
Q ss_pred CCCCccEEEcccCCCCc--ccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccCCcCcc-cchhhhcCCCC
Q 039257 86 TCPHFVTLFLDFNGELK--MIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQNAIEE-LPEELKLLINL 161 (210)
Q Consensus 86 ~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L 161 (210)
..++++.|+++ ++.+. .+|.. +..+++|++|++++| .++ + ..++.+++|++|++++|.++. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~-~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLD-NSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECT-TCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEcc-CCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 45789999999 77887 77775 789999999999999 999 8 778899999999999999997 78777889999
Q ss_pred cEEEccCCCCCCCCC--cccccCCCCCCeEEeeccccCCCcc
Q 039257 162 TCLNLRGTGQLNKIP--RQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp--~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
++|++++| .++.+| .. ++.+++|++|++++|.+.+..+
T Consensus 91 ~~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp CEEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGGGGSTT
T ss_pred CEEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcccchHH
Confidence 99999999 788875 43 8999999999999999865433
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=6e-14 Score=109.67 Aligned_cols=157 Identities=15% Similarity=0.081 Sum_probs=121.2
Q ss_pred cEEEecCCCCccC-CC-c--cCCCCccEEEeecccccccCC------CCCCCCccEEEcccCCCCcccchhHhcCCCCCc
Q 039257 47 NFLVCAGAGLEEA-PD-V--KEWENVRRLSLMQNQIETLSE------VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLK 116 (210)
Q Consensus 47 ~~~~~~~~~~~~~-~~-~--~~~~~l~~L~l~~~~~~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 116 (210)
..+.+.+..+... |. + ..+++++.|++++|.+..... ...+++|++|+++ ++.+..+++..+..+++|+
T Consensus 94 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 94 KELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIA-QAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEE-CCSSCCCCTTSCCCCTTCC
T ss_pred eEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEee-CCCcchhhHHHhccCCCCC
Confidence 3456666666543 32 2 567899999999999876322 1458899999999 8899988876688999999
Q ss_pred EEecCCcccee----ec--ccccCCCcCCEEeccCCcCcccchh----hhcCCCCcEEEccCCCCCCCC-CcccccCC--
Q 039257 117 VLKMSNCWNLK----FL--VGMSKLGSLQLLDISQNAIEELPEE----LKLLINLTCLNLRGTGQLNKI-PRQLISNF-- 183 (210)
Q Consensus 117 ~L~l~~~~~~~----l~--~~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~~~~~l-p~~~~~~l-- 183 (210)
+|++++| .+. ++ ..++.+++|++|++++|.++.+|.. ++.+++|++|++++| .++.. |.. +..+
T Consensus 173 ~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 173 SLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPS-APRCMW 249 (310)
T ss_dssp EEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSC-CSSCCC
T ss_pred EEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhh-HHhccC
Confidence 9999999 754 32 3346889999999999999877653 478899999999999 67766 664 6665
Q ss_pred -CCCCeEEeeccccCCCcchhhhhhc
Q 039257 184 -SRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 184 -~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
++|++|++++|.+. .+|...+.+|
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~~~L 274 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLPAKL 274 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCCSCC
T ss_pred cCcCCEEECCCCCCC-chhhhhcCCC
Confidence 69999999999996 6676554443
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=2e-14 Score=119.09 Aligned_cols=105 Identities=12% Similarity=0.136 Sum_probs=67.2
Q ss_pred CCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee--eccccc-CCCcCCEEeccCCcCcccchhhhcCCCCcEE
Q 039257 88 PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK--FLVGMS-KLGSLQLLDISQNAIEELPEELKLLINLTCL 164 (210)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--l~~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L 164 (210)
++|+.|+++ ++.+..+++..+..+++|++|++++| .++ .|..+. .+++|++|++++|.++.+|. ...+++|+.|
T Consensus 120 ~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L 196 (487)
T 3oja_A 120 QGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTL 196 (487)
T ss_dssp SSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEE
T ss_pred CCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEE
Confidence 445555555 55555554433566667777777777 666 355554 56677777777776666543 2346777777
Q ss_pred EccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 165 NLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 165 ~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
++++| .++.+|+. +..+++|+.|++++|.+.
T Consensus 197 ~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 197 DLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp ECCSS-CCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred ECCCC-CCCCCCHh-HcCCCCccEEEecCCcCc
Confidence 77777 66777665 677777777777777764
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=1.4e-15 Score=131.52 Aligned_cols=111 Identities=23% Similarity=0.257 Sum_probs=99.7
Q ss_pred ccCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCC
Q 039257 62 VKEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQ 139 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~ 139 (210)
+..+..++.|++++|.+..++.. ..+++|++|+++ +|.++.+|.. +..+++|++|++++| .++ +|..++++.+|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLN-GNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCT-TSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEee-CCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCC
Confidence 45567899999999999988765 778999999999 8899999977 899999999999999 999 999999999999
Q ss_pred EEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCC
Q 039257 140 LLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIP 176 (210)
Q Consensus 140 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp 176 (210)
+|++++|.++.+|..++.+++|++|++++| .+...+
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~ 332 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQF 332 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHH
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCC
Confidence 999999999999999999999999999999 666443
No 110
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=2e-13 Score=99.53 Aligned_cols=121 Identities=26% Similarity=0.356 Sum_probs=105.3
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCC---CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSE---VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
..+.+.+..++.+|..- ...++.|++.+|.++.++. ...+++|+.|+++ ++.++.+++..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELK-RNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECC-CCCCCCcCHhHcCCcccCCEEECCCC
Confidence 46788888999988633 3489999999999998765 3678999999999 99999887666999999999999999
Q ss_pred ccee-e-cccccCCCcCCEEeccCCcCccc-chhhhcCCCCcEEEccCCC
Q 039257 124 WNLK-F-LVGMSKLGSLQLLDISQNAIEEL-PEELKLLINLTCLNLRGTG 170 (210)
Q Consensus 124 ~~~~-l-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 170 (210)
.++ + +..+.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 -KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp -CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred -cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999 6 46688999999999999999965 6778899999999999994
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.51 E-value=3.6e-14 Score=111.31 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=96.1
Q ss_pred EEecCCCCccCCCccCCCCccEEEeecccccccCCC------------------CCCCCccEEEcccCCCCcccchhHhc
Q 039257 49 LVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV------------------PTCPHFVTLFLDFNGELKMIADGFFQ 110 (210)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~------------------~~~~~L~~L~l~~~~~~~~~~~~~~~ 110 (210)
+.+.++.++..+.+..+++++.|++++|.++.++.. ..+++|+.|+++ ++.++.+++..+.
T Consensus 63 L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~-~N~l~~~~~~~~~ 141 (317)
T 3o53_A 63 LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLA-NNKITMLRDLDEG 141 (317)
T ss_dssp EECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECC-SSCCCSGGGBCTG
T ss_pred EECCCCcCCcchhhhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECC-CCCCCCccchhhh
Confidence 344444444444445555566666666555443211 224456666666 6666666654466
Q ss_pred CCCCCcEEecCCcccee-e-cccc-cCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCC
Q 039257 111 LMPSLKVLKMSNCWNLK-F-LVGM-SKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLR 187 (210)
Q Consensus 111 ~l~~L~~L~l~~~~~~~-l-~~~~-~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~ 187 (210)
.+++|++|++++| .++ + +..+ ..+++|++|++++|.++.+|.. ..+++|+.|++++| .++.+|.. +..+++|+
T Consensus 142 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~ 217 (317)
T 3o53_A 142 CRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVT 217 (317)
T ss_dssp GGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSS-CCCEECGG-GGGGTTCS
T ss_pred ccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCC-cCCcchhh-hcccCccc
Confidence 7778888888888 777 4 4544 3577888888888887776543 35788888888888 77788776 77888888
Q ss_pred eEEeeccccCCCcch
Q 039257 188 GLRKFITCASSQLKV 202 (210)
Q Consensus 188 ~L~l~~~~~~~~~~~ 202 (210)
+|++++|.+. .+|.
T Consensus 218 ~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 218 WISLRNNKLV-LIEK 231 (317)
T ss_dssp EEECTTSCCC-EECT
T ss_pred EEECcCCccc-chhh
Confidence 8888888775 3443
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=3.1e-13 Score=97.10 Aligned_cols=124 Identities=21% Similarity=0.358 Sum_probs=106.3
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCC--CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEV--PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW 124 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 124 (210)
..+.+.+..++.+|.. ..+.++.|++.+|.++.++.. ..+++|++|+++ ++.++.+++..|..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~N- 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-QNQIQSLPDGVFDKLTKLTILYLHEN- 86 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECC-CCcceEeChhHccCCCccCEEECCCC-
Confidence 3577888888888843 347899999999999987764 678999999999 89999999877889999999999999
Q ss_pred cee-ec-ccccCCCcCCEEeccCCcCcccchhh-hcCCCCcEEEccCCCCCCC
Q 039257 125 NLK-FL-VGMSKLGSLQLLDISQNAIEELPEEL-KLLINLTCLNLRGTGQLNK 174 (210)
Q Consensus 125 ~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~L~~L~l~~~~~~~~ 174 (210)
.++ +| ..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Ceec
Confidence 999 75 55788999999999999999888764 78999999999999 4443
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.49 E-value=1.1e-13 Score=116.62 Aligned_cols=120 Identities=23% Similarity=0.291 Sum_probs=104.1
Q ss_pred CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEeccC
Q 039257 67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDISQ 145 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~ 145 (210)
.++.|++++|.++.+|....+++|+.|+++ +|.++.+|.. +..+++|++|++++| .++ +| .++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecC-cccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 588999999999998887888999999999 8889999886 889999999999999 999 98 889999999999999
Q ss_pred CcCccc--chhhhcCCCCcEEEccCCCCCCCCCcc---cccCCCCCCeEEe
Q 039257 146 NAIEEL--PEELKLLINLTCLNLRGTGQLNKIPRQ---LISNFSRLRGLRK 191 (210)
Q Consensus 146 ~~l~~l--p~~~~~l~~L~~L~l~~~~~~~~lp~~---~~~~l~~L~~L~l 191 (210)
|.++.+ |..++.+++|+.|++++| .++.+|+. .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 999987 889999999999999999 77777653 1234788888863
No 114
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=3.4e-13 Score=96.83 Aligned_cols=98 Identities=19% Similarity=0.305 Sum_probs=51.3
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc-cccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV-GMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~-~~~~l~~L~~L~l~~~ 146 (210)
+.++++++.+..+|... .++|+.|+++ ++.++.+++..|.++++|++|++++| .++ +|. .+.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 34555555555554432 1455555555 55555554443555555555555555 555 443 2345555555555555
Q ss_pred cCcccchh-hhcCCCCcEEEccCC
Q 039257 147 AIEELPEE-LKLLINLTCLNLRGT 169 (210)
Q Consensus 147 ~l~~lp~~-~~~l~~L~~L~l~~~ 169 (210)
.++.+|.. +..+++|++|++++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS
T ss_pred ccceeCHHHhccccCCCEEEeCCC
Confidence 55555443 455555555555555
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.48 E-value=2.4e-13 Score=119.55 Aligned_cols=136 Identities=17% Similarity=0.211 Sum_probs=113.9
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~ 146 (210)
+..+.+++.++.+|. -.+++++|+++ ++.++.+++..|.++++|++|++++|.... + |..++++++|++|++++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 457778888888887 56899999999 899998876669999999999999993344 6 788999999999999999
Q ss_pred cCccc-chhhhcCCCCcEEEccCCCCCCC-CCc-ccccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 147 AIEEL-PEELKLLINLTCLNLRGTGQLNK-IPR-QLISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 147 ~l~~l-p~~~~~l~~L~~L~l~~~~~~~~-lp~-~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
.++.+ |..++++++|++|++++| .+.. +|. ..++.+++|++|++++|.+.+..+...|.++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred cCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 99966 788999999999999999 6654 443 3488999999999999999776665566554
No 116
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=3.6e-13 Score=96.35 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=45.0
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCC
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQN 146 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~ 146 (210)
+.++++++.++.+|... .++++.|+++ ++.++.+++..|.++++|++|++++| .++ +| ..+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 34455555554444322 1444455555 44444444333444455555555555 444 33 22344444445555444
Q ss_pred cCcccchh-hhcCCCCcEEEccCC
Q 039257 147 AIEELPEE-LKLLINLTCLNLRGT 169 (210)
Q Consensus 147 ~l~~lp~~-~~~l~~L~~L~l~~~ 169 (210)
.++.+|.. +..+++|++|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 44444432 344444444444444
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=6.6e-13 Score=111.74 Aligned_cols=131 Identities=23% Similarity=0.266 Sum_probs=98.2
Q ss_pred cEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce
Q 039257 47 NFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL 126 (210)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 126 (210)
..+.+.+..++.+|..- +++++.|++++|.++.+| ..+++|+.|+++ +|.++.+|. +.+ +|++|++++| .+
T Consensus 62 ~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls-~N~l~~ip~--l~~--~L~~L~Ls~N-~l 132 (571)
T 3cvr_A 62 SELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP--ELPASLEYLDAC-DNRLSTLPE--LPA--SLKHLDVDNN-QL 132 (571)
T ss_dssp SEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC--CCCTTCCEEECC-SSCCSCCCC--CCT--TCCEEECCSS-CC
T ss_pred cEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc--cccCCCCEEEcc-CCCCCCcch--hhc--CCCEEECCCC-cC
Confidence 45778888888888632 478999999999999888 567899999999 888888887 443 7888888888 88
Q ss_pred e-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 127 K-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 127 ~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+ +|. .+++|++|++++|.++.+|. .+++|+.|++++| .++.+|. +. ++|+.|++++|.+.
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp SCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCS
T ss_pred CCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCC
Confidence 8 776 56777777777777777765 4566777777777 5666665 33 56666666666553
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.47 E-value=7e-13 Score=112.73 Aligned_cols=120 Identities=23% Similarity=0.265 Sum_probs=85.5
Q ss_pred CCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257 66 ENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS 144 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~ 144 (210)
++++.|++++|.++.++.. +++|+.|+++ ++.++.+|. .+++|+.|++++| .++ +| ..+++|++|+++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~-~N~l~~l~~----~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL--PSELYKLWAY-NNRLTSLPA----LPSGLKELIVSGN-RLTSLP---VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC----CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCCCCc--cchhhEEECc-CCcccccCC----CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECC
Confidence 3444444444444443321 2445555555 555554443 2367888888888 888 77 455788999999
Q ss_pred CCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcc
Q 039257 145 QNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 145 ~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
+|.++.+|. .+++|+.|++++| .++.+|.. +..+++|+.|++++|++.+..+
T Consensus 250 ~N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 250 GNRLTSLPM---LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCCCcCCc---ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEEecCCCCCCcCH
Confidence 999888886 6788999999999 88899986 8999999999999999865544
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=1.6e-12 Score=106.74 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=57.0
Q ss_pred CccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecc---------------
Q 039257 67 NVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLV--------------- 130 (210)
Q Consensus 67 ~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~--------------- 130 (210)
+++.|++++|.++.++.. .++|++|+++ ++.++.+|. +.++++|++|++++| .++ +|.
T Consensus 112 ~L~~L~l~~n~l~~l~~~--~~~L~~L~L~-~n~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDL--PPLLEYLGVS-NNQLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp TCCEEECCSSCCSCCCSC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCC
T ss_pred CCcEEECCCCccCcccCC--CCCCCEEECc-CCCCCCCcc--cCCCCCCCEEECCCC-cCcccCCCcccccEEECcCCcC
Confidence 344444444444333221 1345555555 444554442 445555555555555 444 443
Q ss_pred ----cccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 131 ----GMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 131 ----~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
.++++++|++|++++|.++.+|.. .++|+.|++++| .+..+|. ++.+++|++|++++|.+.
T Consensus 186 ~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 186 EELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred CcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCC
Confidence 234444444444444444443321 134555555555 4445553 566666666666666654
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.44 E-value=2.5e-12 Score=105.66 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=92.2
Q ss_pred EEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee
Q 039257 48 FLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK 127 (210)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 127 (210)
.+.+.+..++.+|.+..++++++|++++|.++++|.. ..+|+.|+++ ++.++.+|. +..+++|++|++++| .++
T Consensus 135 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~-~n~l~~l~~--~~~l~~L~~L~l~~N-~l~ 208 (454)
T 1jl5_A 135 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL--PPSLEFIAAG-NNQLEELPE--LQNLPFLTAIYADNN-SLK 208 (454)
T ss_dssp EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC--CTTCCEEECC-SSCCSSCCC--CTTCTTCCEEECCSS-CCS
T ss_pred EEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC--cccccEEECc-CCcCCcCcc--ccCCCCCCEEECCCC-cCC
Confidence 3455556666667667777777777777777766543 3477777777 777777763 778888888888888 777
Q ss_pred -ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 128 -FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 128 -l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+|... .+|++|++++|.++.+| .++.+++|++|++++| .++.+|.. +++|+.|++++|.+.
T Consensus 209 ~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 209 KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNN-LLKTLPDL----PPSLEALNVRDNYLT 270 (454)
T ss_dssp SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCSC----CTTCCEEECCSSCCS
T ss_pred cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCC-cCCccccc----ccccCEEECCCCccc
Confidence 66432 46777888888777777 3677777777777777 66666642 245555555555543
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.44 E-value=3.7e-12 Score=108.31 Aligned_cols=116 Identities=24% Similarity=0.281 Sum_probs=83.5
Q ss_pred ccEEEecCCCCccCCCccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccc
Q 039257 46 INFLVCAGAGLEEAPDVKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWN 125 (210)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 125 (210)
...+.+.+..++.+|.... ++++.|++++|.++.++. .+++|++|+++ ++.++.+|. .+++|++|++++| .
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N-~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLPV----LPPGLLELSIFSN-P 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCSCCCC----CCTTCCEEEECSC-C
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcC-CCcCCcCCC----CCCCCCEEECcCC-c
Confidence 3567888888888886433 789999999999888777 57889999999 888888776 5678888888888 7
Q ss_pred ee-ecccccCCCcCCEEeccCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 126 LK-FLVGMSKLGSLQLLDISQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 126 ~~-l~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
++ +|. .+.+|++|++++|.++.+|.. +++|++|++++| .++.+|.
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~ 158 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA 158 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC
T ss_pred CCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC
Confidence 77 765 445666666666666666543 355666666665 4554443
No 122
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.7e-12 Score=93.16 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=51.7
Q ss_pred cEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEcc
Q 039257 91 VTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLR 167 (210)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~ 167 (210)
+.++++ ++.++.+|.. + .+.|++|++++| .++ + |..+.++++|++|++++|.++.+|.. +..+++|++|+++
T Consensus 15 ~~l~~~-~n~l~~iP~~-~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAG-I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECC-SSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeC-CCCCCccCCC-c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 344555 5555555543 1 145555555555 555 3 34455555555555555555555443 2455555555555
Q ss_pred CCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 168 GTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 168 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
+| .+..+|...+..+++|++|++++|++.
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 55 455555433455555555555555553
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.7e-12 Score=91.69 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=53.1
Q ss_pred cEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCCcEEEcc
Q 039257 91 VTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINLTCLNLR 167 (210)
Q Consensus 91 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~ 167 (210)
++++++ ++.++.+|.. + .+.+++|++++| .++ + |..+.++.+|++|++++|.++.+|.. +..+++|++|+++
T Consensus 12 ~~l~~s-~n~l~~ip~~-~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCS-GKSLASVPTG-I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECT-TSCCSSCCSC-C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeC-CCCcCccCcc-C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 345555 5555555543 1 245555555555 555 3 34455555555555555555555433 2455555555555
Q ss_pred CCCCCCCCCcccccCCCCCCeEEeeccccCCC
Q 039257 168 GTGQLNKIPRQLISNFSRLRGLRKFITCASSQ 199 (210)
Q Consensus 168 ~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~ 199 (210)
+| .++.+|...+..+++|++|++++|++...
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 55 45555544355555555555555555433
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.37 E-value=5e-15 Score=108.55 Aligned_cols=104 Identities=27% Similarity=0.322 Sum_probs=63.1
Q ss_pred ccCCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCE
Q 039257 62 VKEWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQL 140 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~ 140 (210)
+..+++++.|++++|.++.++....+++|+.|+++ ++.+..+|.. +..+++|++|++++| .++ +| .++.+++|++
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~-~n~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLG-RNLIKKIENL-DAVADTLEELWISYN-QIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEE-EEEECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSE
T ss_pred HhcCCCCCEEECCCCCCccccccccCCCCCEEECC-CCCcccccch-hhcCCcCCEEECcCC-cCCcCC-ccccCCCCCE
Confidence 34455666666666666666533555666666666 5556666553 445566666666666 666 55 4555666666
Q ss_pred EeccCCcCcccch--hhhcCCCCcEEEccCC
Q 039257 141 LDISQNAIEELPE--ELKLLINLTCLNLRGT 169 (210)
Q Consensus 141 L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~ 169 (210)
|++++|.++.+|. .+..+++|++|++++|
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 6666666665543 4556666666666666
No 125
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=4.4e-13 Score=105.55 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=53.2
Q ss_pred ccCCCCccEEEeecccccc--cCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee---ecccccCC
Q 039257 62 VKEWENVRRLSLMQNQIET--LSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKL 135 (210)
Q Consensus 62 ~~~~~~l~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l 135 (210)
...+++++.|++++|.+.. ++.. ..+++|+.|+++ ++.+.......+..+++|++|++++|..++ ++..+.++
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~-~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE-GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT-TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc-CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 3445677777777776543 2222 455666666666 444443222225556666666666553233 23334445
Q ss_pred CcCCEEeccCC-cCcc--cchhhhcCC-CCcEEEccCC
Q 039257 136 GSLQLLDISQN-AIEE--LPEELKLLI-NLTCLNLRGT 169 (210)
Q Consensus 136 ~~L~~L~l~~~-~l~~--lp~~~~~l~-~L~~L~l~~~ 169 (210)
++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 55555555555 4442 333334444 4444444444
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=1.5e-14 Score=105.98 Aligned_cols=128 Identities=20% Similarity=0.224 Sum_probs=105.1
Q ss_pred ccEEEeecc--cccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ecccccCCCcCCEEec
Q 039257 68 VRRLSLMQN--QIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDI 143 (210)
Q Consensus 68 l~~L~l~~~--~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l 143 (210)
++...+.+. .++.++.. ..+++|+.|+++ ++.++.+| . +..+++|++|++++| .++ +|..+..+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEEC
Confidence 444444443 33333323 668899999999 88899888 3 889999999999999 999 9988888899999999
Q ss_pred cCCcCcccchhhhcCCCCcEEEccCCCCCCCCCc-ccccCCCCCCeEEeeccccCCCcc
Q 039257 144 SQNAIEELPEELKLLINLTCLNLRGTGQLNKIPR-QLISNFSRLRGLRKFITCASSQLK 201 (210)
Q Consensus 144 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~lp~-~~~~~l~~L~~L~l~~~~~~~~~~ 201 (210)
++|.++.+| .+..+++|++|++++| .++.++. ..+..+++|++|++++|.+.+..|
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 999999887 6889999999999999 7887764 338899999999999999866544
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.28 E-value=1.8e-11 Score=97.16 Aligned_cols=135 Identities=15% Similarity=0.114 Sum_probs=101.6
Q ss_pred cEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce-e-ec-ccccCCCcCCE-Eecc
Q 039257 69 RRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL-K-FL-VGMSKLGSLQL-LDIS 144 (210)
Q Consensus 69 ~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~-l~-~~~~~l~~L~~-L~l~ 144 (210)
+.++.++++++.+|... .++++.|+++ ++.++.+|+..|.++++|++|++++| .+ + +| ..+.+++++.. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence 46778888888887643 3679999999 99999999877999999999999999 76 4 65 56778888765 5666
Q ss_pred CCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 145 QNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 145 ~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
+|+++.+| ..+..+++|++|++++| .+..+|...+....++..+++.++.....++...|..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~ 151 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG 151 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhh
Confidence 78888875 55688999999999998 7777776434455556666665554445555544443
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=3.2e-11 Score=95.45 Aligned_cols=98 Identities=19% Similarity=0.270 Sum_probs=49.2
Q ss_pred EEeecc-cccccCCCCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCc
Q 039257 71 LSLMQN-QIETLSEVPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA 147 (210)
Q Consensus 71 L~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~ 147 (210)
++..++ .++.+|....+.+|+.|++++.|.++.+++..|.++++|++|++++| .++ + |..+.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCc
Confidence 344444 45555443344455555555115555555444555555555555555 555 3 3344555555555555555
Q ss_pred CcccchhhhcCCCCcEEEccCC
Q 039257 148 IEELPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 148 l~~lp~~~~~l~~L~~L~l~~~ 169 (210)
++.+|..+.....|+.|++.+|
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSS
T ss_pred cceeCHHHcccCCceEEEeeCC
Confidence 5555543332223555555555
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.26 E-value=6.7e-12 Score=98.78 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=52.6
Q ss_pred CCCccEEEeecccccc-cCC-CCCCCCccEEEcccCC-CCcc--cchhHhcCCCCCcEEecCCcccee---ecccccCCC
Q 039257 65 WENVRRLSLMQNQIET-LSE-VPTCPHFVTLFLDFNG-ELKM--IADGFFQLMPSLKVLKMSNCWNLK---FLVGMSKLG 136 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~-l~~-~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~l~~L~~L~l~~~~~~~---l~~~~~~l~ 136 (210)
+++++.|++.+|.+.. .+. ...+++|++|+++ ++ .++. ++.. +..+++|++|++++|..++ ++..+..++
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 3455555555554432 111 1334455555555 32 3332 2222 3444555555554442232 233344444
Q ss_pred -cCCEEeccCCc--C--cccchhhhcCCCCcEEEccCCCCCC-CCCcccccCCCCCCeEEeecc
Q 039257 137 -SLQLLDISQNA--I--EELPEELKLLINLTCLNLRGTGQLN-KIPRQLISNFSRLRGLRKFIT 194 (210)
Q Consensus 137 -~L~~L~l~~~~--l--~~lp~~~~~l~~L~~L~l~~~~~~~-~lp~~~~~~l~~L~~L~l~~~ 194 (210)
+|++|++++|. + ..+|..+..+++|+.|++++|..++ ..+.. ++.+++|++|++++|
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTC
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCC
Confidence 44555554442 2 1233334444444444444442122 12221 444444444444444
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.24 E-value=3.2e-12 Score=102.72 Aligned_cols=112 Identities=13% Similarity=0.111 Sum_probs=67.2
Q ss_pred CCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCccce-----e-ecccccCCCcCCEEeccCCcCcc----
Q 039257 86 TCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNL-----K-FLVGMSKLGSLQLLDISQNAIEE---- 150 (210)
Q Consensus 86 ~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~-----~-l~~~~~~l~~L~~L~l~~~~l~~---- 150 (210)
.+++|++|+++ ++.+.. +.+..+..+++|++|++++| .+ . +|..+..+++|++|++++|.++.
T Consensus 185 ~~~~L~~L~L~-~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 185 SHRLLHTVKMV-QNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HCTTCCEEECC-SSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred hCCCcCEEECc-CCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 34566666666 555541 11212556667777777777 66 4 55666666777777777776653
Q ss_pred -cchhh--hcCCCCcEEEccCCCCCCC-----CCcccccCCCCCCeEEeeccccCCCc
Q 039257 151 -LPEEL--KLLINLTCLNLRGTGQLNK-----IPRQLISNFSRLRGLRKFITCASSQL 200 (210)
Q Consensus 151 -lp~~~--~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~~~~~ 200 (210)
+|..+ +.+++|+.|++++| .++. +|..+..++++|++|++++|.+.+..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 24444 23677777777777 5555 66542255677777777777775544
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.20 E-value=3.5e-12 Score=102.48 Aligned_cols=107 Identities=22% Similarity=0.265 Sum_probs=69.3
Q ss_pred CCccEEEcccCCCCc--ccch--hHhcCCCCCcEEecCCcccee------e-cccccCCCcCCEEeccCCcC-----ccc
Q 039257 88 PHFVTLFLDFNGELK--MIAD--GFFQLMPSLKVLKMSNCWNLK------F-LVGMSKLGSLQLLDISQNAI-----EEL 151 (210)
Q Consensus 88 ~~L~~L~l~~~~~~~--~~~~--~~~~~l~~L~~L~l~~~~~~~------l-~~~~~~l~~L~~L~l~~~~l-----~~l 151 (210)
++|++|+++ ++.+. .++. ..+..+++|++|++++| .++ + |..+..+++|++|++++|.+ ..+
T Consensus 159 ~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICG-RNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL 236 (386)
T ss_dssp CCCCEEECC-SSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred CCCcEEECC-CCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence 567777777 66554 2221 12556777777777777 655 1 22566777777888877777 456
Q ss_pred chhhhcCCCCcEEEccCCCCCCCC-----Ccccc--cCCCCCCeEEeeccccCC
Q 039257 152 PEELKLLINLTCLNLRGTGQLNKI-----PRQLI--SNFSRLRGLRKFITCASS 198 (210)
Q Consensus 152 p~~~~~l~~L~~L~l~~~~~~~~l-----p~~~~--~~l~~L~~L~l~~~~~~~ 198 (210)
|..+..+++|+.|++++| .++.. +.. + +.+++|++|++++|.+..
T Consensus 237 ~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~-l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 237 AIALKSWPNLRELGLNDC-LLSARGAAAVVDA-FSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHH-HHTCSSCCCCEEECCSSCCBH
T ss_pred HHHHccCCCcCEEECCCC-CCchhhHHHHHHH-HhhccCCCeEEEECcCCcCCH
Confidence 666777777888888777 55543 332 4 337778888888877755
No 132
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=1.3e-10 Score=92.01 Aligned_cols=100 Identities=22% Similarity=0.254 Sum_probs=79.0
Q ss_pred EEEecCC-CCccCCCccCCCCccEEEeec-ccccccCC--CCCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 48 FLVCAGA-GLEEAPDVKEWENVRRLSLMQ-NQIETLSE--VPTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 48 ~~~~~~~-~~~~~~~~~~~~~l~~L~l~~-~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
.+.|.+. .++.+|.+..+.+|+.|++++ |.++.++. +..+++|+.|+++ +|.+..+++..|..+++|+.|++++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV-KSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC-SSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC-CCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4577777 788888877777888999986 88888765 3778889999998 88888888776888999999999999
Q ss_pred ccee-ecccccCCCcCCEEeccCCcCc
Q 039257 124 WNLK-FLVGMSKLGSLQLLDISQNAIE 149 (210)
Q Consensus 124 ~~~~-l~~~~~~l~~L~~L~l~~~~l~ 149 (210)
.++ +|..+.....|++|++.+|.+.
T Consensus 91 -~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 -ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp -CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred -ccceeCHHHcccCCceEEEeeCCCcc
Confidence 888 7654443334889999888876
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.13 E-value=2.6e-11 Score=96.71 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=94.2
Q ss_pred EEEecCCCCccCCC------ccCCC-CccEEEeecccccccCCC--CC-----CCCccEEEcccCCCCcccchhH----h
Q 039257 48 FLVCAGAGLEEAPD------VKEWE-NVRRLSLMQNQIETLSEV--PT-----CPHFVTLFLDFNGELKMIADGF----F 109 (210)
Q Consensus 48 ~~~~~~~~~~~~~~------~~~~~-~l~~L~l~~~~~~~l~~~--~~-----~~~L~~L~l~~~~~~~~~~~~~----~ 109 (210)
.+.+.+..+...+. +..++ +++.|++++|.+...... .. .++|++|+++ ++.++..+... +
T Consensus 26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l 104 (362)
T 3goz_A 26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS-GNFLSYKSSDELVKTL 104 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHHHHH
T ss_pred EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc-CCcCChHHHHHHHHHH
Confidence 45566666655542 23444 788888888877654221 22 2778888888 77777655432 3
Q ss_pred cCC-CCCcEEecCCcccee-ec-ccc----cC-CCcCCEEeccCCcCc-----ccchhhhcCC-CCcEEEccCCCCCCCC
Q 039257 110 QLM-PSLKVLKMSNCWNLK-FL-VGM----SK-LGSLQLLDISQNAIE-----ELPEELKLLI-NLTCLNLRGTGQLNKI 175 (210)
Q Consensus 110 ~~l-~~L~~L~l~~~~~~~-l~-~~~----~~-l~~L~~L~l~~~~l~-----~lp~~~~~l~-~L~~L~l~~~~~~~~l 175 (210)
..+ ++|++|++++| .++ .+ ..+ .. ..+|++|++++|.++ .++..+..++ +|++|++++| .++..
T Consensus 105 ~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~ 182 (362)
T 3goz_A 105 AAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASK 182 (362)
T ss_dssp HTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGS
T ss_pred HhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchh
Confidence 344 78888888888 777 43 332 33 257888888888777 3344455555 7888888888 66655
Q ss_pred Ccc----cccCC-CCCCeEEeeccccCC
Q 039257 176 PRQ----LISNF-SRLRGLRKFITCASS 198 (210)
Q Consensus 176 p~~----~~~~l-~~L~~L~l~~~~~~~ 198 (210)
+.. .+... ++|++|++++|.+..
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 432 13344 588888888888743
No 134
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.08 E-value=4.8e-11 Score=95.12 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=105.7
Q ss_pred cEEEecCCCCccCC--CccC-----CCCccEEEeecccccccCCC------CCC-CCccEEEcccCCCCcccchhHh---
Q 039257 47 NFLVCAGAGLEEAP--DVKE-----WENVRRLSLMQNQIETLSEV------PTC-PHFVTLFLDFNGELKMIADGFF--- 109 (210)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~~-----~~~l~~L~l~~~~~~~l~~~------~~~-~~L~~L~l~~~~~~~~~~~~~~--- 109 (210)
..+.+.++.+.... .+.. .+.++.|++++|.++..... ..+ ++|++|+++ ++.++..+...+
T Consensus 54 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~ 132 (362)
T 3goz_A 54 TSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG-WNDFSSKSSSEFKQA 132 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SSCGGGSCHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc-CCcCCcHHHHHHHHH
Confidence 34566777666542 1222 27899999999998764321 333 789999999 888887776433
Q ss_pred -cC-CCCCcEEecCCcccee-e-----cccccCCC-cCCEEeccCCcCcccc-h----hhhcC-CCCcEEEccCCCCCCC
Q 039257 110 -QL-MPSLKVLKMSNCWNLK-F-----LVGMSKLG-SLQLLDISQNAIEELP-E----ELKLL-INLTCLNLRGTGQLNK 174 (210)
Q Consensus 110 -~~-l~~L~~L~l~~~~~~~-l-----~~~~~~l~-~L~~L~l~~~~l~~lp-~----~~~~l-~~L~~L~l~~~~~~~~ 174 (210)
.. ..+|++|++++| .++ . +..+..++ +|++|++++|.++..+ . .+... ++|+.|++++| .++.
T Consensus 133 l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~ 210 (362)
T 3goz_A 133 FSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGL 210 (362)
T ss_dssp HTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGG
T ss_pred HHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCCh
Confidence 33 369999999999 776 2 33445555 8999999999987544 2 33445 59999999999 7776
Q ss_pred -----CCcccccC-CCCCCeEEeeccccCC
Q 039257 175 -----IPRQLISN-FSRLRGLRKFITCASS 198 (210)
Q Consensus 175 -----lp~~~~~~-l~~L~~L~l~~~~~~~ 198 (210)
++.. +.. .++|++|++++|.+..
T Consensus 211 ~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 211 KSYAELAYI-FSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp SCHHHHHHH-HHHSCTTCCEEECCSSCCCC
T ss_pred hHHHHHHHH-HhcCCCCceEEECcCCCCCc
Confidence 5554 444 4699999999998844
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.07 E-value=8.9e-10 Score=86.62 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=17.9
Q ss_pred CCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 87 CPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 87 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
+++|+.+.+. . .++.++...|.++.+|+.++++++
T Consensus 100 ~~~L~~l~L~-~-~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILS-E-KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBC-T-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECC-c-cccchhHHHhhcCcccceEEcCCC
Confidence 4555555555 3 455555544555555555555554
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.2e-09 Score=85.88 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=71.7
Q ss_pred CCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCCc-EEEccCCCCCCCCCcccccCCCCCC
Q 039257 112 MPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINLT-CLNLRGTGQLNKIPRQLISNFSRLR 187 (210)
Q Consensus 112 l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~-~L~l~~~~~~~~lp~~~~~~l~~L~ 187 (210)
+++|+.+++++| .++ +| ..|.++.+|+.+++..| ++.++ ..+.++.+|+ .+++.+ .++.++...|..+++|+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 678888888888 788 75 56778888888888886 67665 4567888888 888876 47788777788888899
Q ss_pred eEEeeccccCCCcchhhhhhc
Q 039257 188 GLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 188 ~L~l~~~~~~~~~~~~~f~~l 208 (210)
.+++.+|.+ ..++...|.++
T Consensus 301 ~l~l~~n~i-~~I~~~aF~~~ 320 (329)
T 3sb4_A 301 YVLATGDKI-TTLGDELFGNG 320 (329)
T ss_dssp EEEECSSCC-CEECTTTTCTT
T ss_pred EEEeCCCcc-CccchhhhcCC
Confidence 998877776 66777777654
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.96 E-value=1.2e-10 Score=95.41 Aligned_cols=128 Identities=20% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCCCccEEEeeccccccc------CCC-CCCCCccEEEcccCCCCcc-----cchhHhcCCCCCcEEecCCcccee-e--
Q 039257 64 EWENVRRLSLMQNQIETL------SEV-PTCPHFVTLFLDFNGELKM-----IADGFFQLMPSLKVLKMSNCWNLK-F-- 128 (210)
Q Consensus 64 ~~~~l~~L~l~~~~~~~l------~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~-l-- 128 (210)
.+++++.|++++|.+... +.. ..+++|+.|+++ ++.++. ++.. +..+++|++|++++| .++ .
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n-~i~~~~~ 301 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGDLCRV-LRAKESLKELSLAGN-ELGDEGA 301 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT-TSCCCHHHHHHHHHH-HHHCTTCCEEECTTC-CCHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc-CCCCCHHHHHHHHHH-HhhCCCcceEECCCC-CCchHHH
Confidence 345667777777665431 111 235566666666 555554 2332 444555666666555 443 1
Q ss_pred --------------------------------cccccCCCcCCEEeccCCcCccc-chhhhc-----CCCCcEEEccCCC
Q 039257 129 --------------------------------LVGMSKLGSLQLLDISQNAIEEL-PEELKL-----LINLTCLNLRGTG 170 (210)
Q Consensus 129 --------------------------------~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~-----l~~L~~L~l~~~~ 170 (210)
+..+..+++|++|++++|.++.. +..+.. .++|+.|++++|
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n- 380 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC- 380 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-
Confidence 22233345555555555554422 122211 456666666666
Q ss_pred CCC-----CCCcccccCCCCCCeEEeecccc
Q 039257 171 QLN-----KIPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 171 ~~~-----~lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
.++ .+|.. +..+++|++|++++|.+
T Consensus 381 ~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 381 DVSDSSCSSLAAT-LLANHSLRELDLSNNCL 410 (461)
T ss_dssp CCCHHHHHHHHHH-HHHCCCCCEEECCSSSC
T ss_pred CCChhhHHHHHHH-HHhCCCccEEECCCCCC
Confidence 455 44543 55666777777776665
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.90 E-value=2.8e-10 Score=91.10 Aligned_cols=129 Identities=18% Similarity=0.166 Sum_probs=92.2
Q ss_pred CCccEEEeecccccc--cCCC-CCCCCccEEEcccCCCCcccchhHh-----cCCCCCcEEecCCcccee------eccc
Q 039257 66 ENVRRLSLMQNQIET--LSEV-PTCPHFVTLFLDFNGELKMIADGFF-----QLMPSLKVLKMSNCWNLK------FLVG 131 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~--l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~------l~~~ 131 (210)
..++.|++++|.+.. +... ..+++|+.|+++ ++.++......+ ...+.|+.|++++| .++ ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls-~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQ-LNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECC-SSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcC-CCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHH
Confidence 578889999988754 2122 345678999999 777765443322 35678999999999 775 3345
Q ss_pred ccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCcc----cccCCCCCCeEEeeccccC
Q 039257 132 MSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPRQ----LISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 132 ~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~~----~~~~l~~L~~L~l~~~~~~ 197 (210)
+...++|++|++++|.++. ++..+...++|+.|++++| .++..... .+...++|++|++++|.+.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 5677889999999998773 3455667788999999999 66643221 2445688999999999873
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.84 E-value=5e-10 Score=91.66 Aligned_cols=131 Identities=18% Similarity=0.215 Sum_probs=95.6
Q ss_pred cCCCCccEEEeecccccc-----cCCC-CCCCCccEEEcccCCCCcccc-hhHhcCCC----CCcEEecCCcccee----
Q 039257 63 KEWENVRRLSLMQNQIET-----LSEV-PTCPHFVTLFLDFNGELKMIA-DGFFQLMP----SLKVLKMSNCWNLK---- 127 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~----~L~~L~l~~~~~~~---- 127 (210)
..+++++.|++++|.+.. ++.. ..+++|++|+++ ++.+.... ..++..++ +|++|++++| .++
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~ 102 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR-SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGC 102 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT-TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC-CCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHH
Confidence 455689999999998763 2332 557889999999 77776533 23344565 6999999999 766
Q ss_pred --ecccccCCCcCCEEeccCCcCccc-chhh-----hcCCCCcEEEccCCCCCCCC-----CcccccCCCCCCeEEeecc
Q 039257 128 --FLVGMSKLGSLQLLDISQNAIEEL-PEEL-----KLLINLTCLNLRGTGQLNKI-----PRQLISNFSRLRGLRKFIT 194 (210)
Q Consensus 128 --l~~~~~~l~~L~~L~l~~~~l~~l-p~~~-----~~l~~L~~L~l~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~ 194 (210)
++..+..+++|++|++++|.++.. +..+ ...++|++|++++| .++.. +. .+..+++|++|++++|
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~-~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLAS-VLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHH-HHHHCTTCCEEECCSS
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHH-HHhhCCCCCEEECcCC
Confidence 367788899999999999987632 2222 23567999999999 66653 33 3667899999999999
Q ss_pred ccC
Q 039257 195 CAS 197 (210)
Q Consensus 195 ~~~ 197 (210)
.+.
T Consensus 181 ~i~ 183 (461)
T 1z7x_W 181 DIN 183 (461)
T ss_dssp BCH
T ss_pred Ccc
Confidence 863
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=4.1e-09 Score=84.38 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=94.4
Q ss_pred CCccEEEeecccccccC-----CC--CCCCCccEEEcccCCCCcccch-hHhcCCCCCcEEecCCcccee-e-cccc---
Q 039257 66 ENVRRLSLMQNQIETLS-----EV--PTCPHFVTLFLDFNGELKMIAD-GFFQLMPSLKVLKMSNCWNLK-F-LVGM--- 132 (210)
Q Consensus 66 ~~l~~L~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-l-~~~~--- 132 (210)
+.++.|++++|.+.... .. ....+|+.|+++ ++.+..... .....+++|+.|++++| .++ . ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 47889999999886521 11 234689999999 877764322 22345678999999999 887 3 2333
Q ss_pred --cCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCC----cccccCCCCCCeEEeeccccC
Q 039257 133 --SKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIP----RQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 133 --~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp----~~~~~~l~~L~~L~l~~~~~~ 197 (210)
.....|++|++++|.++. ++..+...++|++|++++| .++... ...+...++|++|++++|.+.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 246789999999999874 4455677899999999999 665432 123667889999999999884
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.57 E-value=4.2e-08 Score=82.70 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=15.5
Q ss_pred cCCCCCcEEecCCcccee-ecccccCCCcCCEEecc
Q 039257 110 QLMPSLKVLKMSNCWNLK-FLVGMSKLGSLQLLDIS 144 (210)
Q Consensus 110 ~~l~~L~~L~l~~~~~~~-l~~~~~~l~~L~~L~l~ 144 (210)
..+++|+.|++++| .+. +|..+..+++|++|+++
T Consensus 217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEEC
T ss_pred hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhccc
Confidence 34455555555555 444 44333444444444443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.50 E-value=9.1e-07 Score=71.43 Aligned_cols=139 Identities=14% Similarity=0.133 Sum_probs=72.0
Q ss_pred cCCCCccEEEeecccccccCCC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcc-----------------
Q 039257 63 KEWENVRRLSLMQNQIETLSEV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCW----------------- 124 (210)
Q Consensus 63 ~~~~~l~~L~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------------- 124 (210)
..+.+|+.+.+.++.++.++.. .....|+.+.+. .+ ++.++...|.++.+|+.+.+..+-
T Consensus 177 ~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~ 254 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP-VT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVK 254 (401)
T ss_dssp TTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC-TT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEE
T ss_pred hCcccCCeeecCCCcceEechhhEeecccCEEEeC-Cc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEE
Confidence 3445566666666655554443 223455555554 22 455555555555555555554320
Q ss_pred ---cee-e-cccccCCCcCCEEeccCCcCc-----ccc-hhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257 125 ---NLK-F-LVGMSKLGSLQLLDISQNAIE-----ELP-EELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI 193 (210)
Q Consensus 125 ---~~~-l-~~~~~~l~~L~~L~l~~~~l~-----~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 193 (210)
.++ + +.+|.++.+|+.+.+.++.+. .++ ..+..+++|+.+++.. .+..++...|..+++|+.+.+..
T Consensus 255 lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 255 LPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT
T ss_pred eCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc
Confidence 122 3 234455556666666555433 232 3445566666666653 35666655566666677766633
Q ss_pred cccCCCcchhhhhh
Q 039257 194 TCASSQLKVSTWEN 207 (210)
Q Consensus 194 ~~~~~~~~~~~f~~ 207 (210)
+ ...++..+|.+
T Consensus 333 ~--l~~I~~~aF~~ 344 (401)
T 4fdw_A 333 N--VTQINFSAFNN 344 (401)
T ss_dssp T--CCEECTTSSSS
T ss_pred c--ccEEcHHhCCC
Confidence 3 24455555543
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.41 E-value=3.1e-07 Score=77.38 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=59.0
Q ss_pred CCCccEEEeecccccccC-----CC-CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCccce---e-ecccccC
Q 039257 65 WENVRRLSLMQNQIETLS-----EV-PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNL---K-FLVGMSK 134 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~-----~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~-l~~~~~~ 134 (210)
++.|+.|++.++.++.+. .. ..+++|++|++. .+.+..++.. +..+++|+.|+++..... . .+..+..
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~-~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG-DFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS-SCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc-CccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 345666666666554221 11 456889999998 6777776654 777888888888643111 1 2233444
Q ss_pred CCcCCEEeccCCcCcccchhhhcCCCCcEEEccCC
Q 039257 135 LGSLQLLDISQNAIEELPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 135 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 169 (210)
+++|+.|+++++....+|..+..+++|++|++++|
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTC
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCC
Confidence 55555555555443444444455555555555555
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.38 E-value=4.6e-07 Score=72.13 Aligned_cols=129 Identities=13% Similarity=0.173 Sum_probs=82.0
Q ss_pred CCCCccEEEeecccccccCCCCCCCCccEEEcccCCCCcccchhHh--cCCCCCcEEecCCc-------ccee-ecccc-
Q 039257 64 EWENVRRLSLMQNQIETLSEVPTCPHFVTLFLDFNGELKMIADGFF--QLMPSLKVLKMSNC-------WNLK-FLVGM- 132 (210)
Q Consensus 64 ~~~~l~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~-------~~~~-l~~~~- 132 (210)
.++.|+.|.+.++.-..++. ..+++|+.|.+. .+.+..-....+ ..+++|+.|+++.+ ..+. +...+
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~~~~~L~~L~L~-~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-KPRPNLKSLEII-SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-CBCTTCSEEEEE-CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred cCCCCcEEEEeCCCCceecc-ccCCCCcEEEEe-cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 44678888888773222333 237788888888 665543221112 36889999987531 0122 22223
Q ss_pred -cCCCcCCEEeccCCcCcc-cchhh---hcCCCCcEEEccCCCCCCC-----CCcccccCCCCCCeEEeecccc
Q 039257 133 -SKLGSLQLLDISQNAIEE-LPEEL---KLLINLTCLNLRGTGQLNK-----IPRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 133 -~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~~~~~-----lp~~~~~~l~~L~~L~l~~~~~ 196 (210)
..+++|++|++.+|.+.. .+..+ ..+++|++|+++.| .++. ++.. +..+++|+.|++++|.+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDH-VDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTT-HHHHTTCSEEECCSBBC
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhh-cccCCcceEEECCCCcC
Confidence 247889999999887762 22223 25778999999888 6655 2322 45678999999988875
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.36 E-value=1.1e-07 Score=80.22 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=19.6
Q ss_pred cCCCCcEEEccCCCCCCCC-CcccccCCCCCCeEEeecc
Q 039257 157 LLINLTCLNLRGTGQLNKI-PRQLISNFSRLRGLRKFIT 194 (210)
Q Consensus 157 ~l~~L~~L~l~~~~~~~~l-p~~~~~~l~~L~~L~l~~~ 194 (210)
.+++|+.|++++| .++.. ....+..+++|++|++++|
T Consensus 287 ~~~~L~~L~L~~~-~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTC-CCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCC-CCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 4556666666666 23321 1112345666777776655
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.33 E-value=1.1e-07 Score=80.18 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCccEEEeecccccccC--CC-CCCCCccEEEcccCCCCcc--cchhHhcCCCCCcEEecCCcccee-e-ccccc----
Q 039257 65 WENVRRLSLMQNQIETLS--EV-PTCPHFVTLFLDFNGELKM--IADGFFQLMPSLKVLKMSNCWNLK-F-LVGMS---- 133 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~l~--~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~---- 133 (210)
+++++.|+++++.+.... .. ..+++|++|++.++..+.. ++. .+..+++|++|++++| .++ . +..+.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-IAATCRNLKELDLRES-DVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-HHHHCTTCCEEECTTC-EEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-HHHhCCCCCEEeCcCC-ccCCcchHHHHHHhh
Confidence 457888888877654311 11 2467888888873324443 222 2457888888888888 665 2 33333
Q ss_pred CCCcCCEEeccCCc--Cc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeecc
Q 039257 134 KLGSLQLLDISQNA--IE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFIT 194 (210)
Q Consensus 134 ~l~~L~~L~l~~~~--l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~ 194 (210)
.+++|++|++++|. +. .++.-...+++|+.|++++|..+..+|.. +..+++|++|++..+
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGY 245 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBC
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccc
Confidence 45688888888875 22 22222345688888888887555555553 666777777775433
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=6.4e-07 Score=64.50 Aligned_cols=107 Identities=16% Similarity=0.186 Sum_probs=74.8
Q ss_pred CCCCCccEEEcccCC-CCcc-----cchhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc--
Q 039257 85 PTCPHFVTLFLDFNG-ELKM-----IADGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-- 150 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-- 150 (210)
...+.|++|+++ ++ .+.. +... +...+.|++|++++| .+. +.+.+...+.|++|++++|.+..
T Consensus 33 ~~~~~L~~L~L~-~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 33 NNDPDLEEVNLN-NIMNIPVPTLKACAEA-LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp TTCTTCCEEECT-TCTTCCHHHHHHHHHH-HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred hcCCCCCEEEec-CCCCCCHHHHHHHHHH-HHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 446778888888 66 6653 2222 556788899999988 776 23445556788999999998773
Q ss_pred ---cchhhhcCCCCcEEEc--cCCCCCCCC-----CcccccCCCCCCeEEeecccc
Q 039257 151 ---LPEELKLLINLTCLNL--RGTGQLNKI-----PRQLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 151 ---lp~~~~~l~~L~~L~l--~~~~~~~~l-----p~~~~~~l~~L~~L~l~~~~~ 196 (210)
+...+...++|++|++ ++| .++.- .. .+...++|++|++++|.+
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 3455667778999999 777 55542 22 245568899999988876
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=4.9e-07 Score=64.36 Aligned_cols=86 Identities=14% Similarity=0.165 Sum_probs=53.2
Q ss_pred CCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCC----CcCCEEeccCC-cCccc-chhhhcCC
Q 039257 88 PHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKL----GSLQLLDISQN-AIEEL-PEELKLLI 159 (210)
Q Consensus 88 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l----~~L~~L~l~~~-~l~~l-p~~~~~l~ 159 (210)
.+|+.|+++ ++.++...-..+.++++|+.|++++|..++ - -..+..+ ++|++|++++| +++.- -..+.+++
T Consensus 61 ~~L~~LDLs-~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDAT-DSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEE-SCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCc-CCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 467888888 555665443335677788888888775455 1 2334443 35777777776 35521 13445677
Q ss_pred CCcEEEccCCCCCCC
Q 039257 160 NLTCLNLRGTGQLNK 174 (210)
Q Consensus 160 ~L~~L~l~~~~~~~~ 174 (210)
+|++|++++|+.+++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777755554
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.27 E-value=1e-05 Score=65.24 Aligned_cols=103 Identities=14% Similarity=0.242 Sum_probs=50.4
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccchh-hhcCCCC
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELPEE-LKLLINL 161 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L 161 (210)
..+.+|+.+.+. .+.++.++...|. ..+|+.+.+.. .++ + ..+|.++.+|+.+.+..+ ++.++.. +.+ .+|
T Consensus 177 ~~c~~L~~l~l~-~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 177 YYCYNLKKADLS-KTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TTCTTCCEEECT-TSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred hCcccCCeeecC-CCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 444555555555 5555555555443 35555555543 244 4 345556666666666542 3333221 122 344
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
+.+.+.. .+..++...|..+++|+.+.+.++.
T Consensus 251 ~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~ 282 (401)
T 4fdw_A 251 TTVKLPN--GVTNIASRAFYYCPELAEVTTYGST 282 (401)
T ss_dssp SEEEEET--TCCEECTTTTTTCTTCCEEEEESSC
T ss_pred cEEEeCC--CccEEChhHhhCCCCCCEEEeCCcc
Confidence 4444422 2445544445555566666555443
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=3.5e-06 Score=59.93 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=51.5
Q ss_pred CCcEEecCCcccee-e-cccccCCCcCCEEeccCCc-Cccc-chhhhcC----CCCcEEEccCCCCCCCCCcccccCCCC
Q 039257 114 SLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNA-IEEL-PEELKLL----INLTCLNLRGTGQLNKIPRQLISNFSR 185 (210)
Q Consensus 114 ~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~l----~~L~~L~l~~~~~~~~lp~~~~~~l~~ 185 (210)
.|+.||++++ .++ . -..+.++++|+.|++++|. ++.- -..+..+ ++|++|++++|..+++-.-..+.++++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 5677777777 566 2 2445667777777777773 5421 1223332 357777777775565533333566777
Q ss_pred CCeEEeeccccCCC
Q 039257 186 LRGLRKFITCASSQ 199 (210)
Q Consensus 186 L~~L~l~~~~~~~~ 199 (210)
|++|++++++..++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777765554
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.16 E-value=1.5e-06 Score=66.19 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=39.2
Q ss_pred CCCCCcEEecCCcccee-ec---ccccCCCcCCEEeccCCcCcccchhhhcCC--CCcEEEccCCCCCCCCCc------c
Q 039257 111 LMPSLKVLKMSNCWNLK-FL---VGMSKLGSLQLLDISQNAIEELPEELKLLI--NLTCLNLRGTGQLNKIPR------Q 178 (210)
Q Consensus 111 ~l~~L~~L~l~~~~~~~-l~---~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~~~~lp~------~ 178 (210)
.++.|+.|++++| .++ ++ ..+..+++|+.|+|++|.++.+ ..+..+. +|+.|++++|+....+|. .
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4556666666666 555 32 3344556666666666655544 2233333 566666666632222331 1
Q ss_pred cccCCCCCCeEE
Q 039257 179 LISNFSRLRGLR 190 (210)
Q Consensus 179 ~~~~l~~L~~L~ 190 (210)
++..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244555555554
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=3.1e-06 Score=64.43 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=61.1
Q ss_pred EecCCcccee-ecc----cccCCCcCCEEeccCCcCcccc---hhhhcCCCCcEEEccCCCCCCCCCcccccCCC--CCC
Q 039257 118 LKMSNCWNLK-FLV----GMSKLGSLQLLDISQNAIEELP---EELKLLINLTCLNLRGTGQLNKIPRQLISNFS--RLR 187 (210)
Q Consensus 118 L~l~~~~~~~-l~~----~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~--~L~ 187 (210)
++++.| ... ++. ...++++|+.|++++|.++.++ ..+..+++|+.|+|++| .+..+.. +..++ +|+
T Consensus 148 l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~l~L~ 223 (267)
T 3rw6_A 148 IDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERE--LDKIKGLKLE 223 (267)
T ss_dssp CCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGG--GGGGTTSCCS
T ss_pred ccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchh--hhhcccCCcc
Confidence 455566 444 332 1246889999999999988654 56679999999999999 7887743 55555 999
Q ss_pred eEEeeccccCCCcc
Q 039257 188 GLRKFITCASSQLK 201 (210)
Q Consensus 188 ~L~l~~~~~~~~~~ 201 (210)
.|++++|++.+.+|
T Consensus 224 ~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 224 ELWLDGNSLCDTFR 237 (267)
T ss_dssp EEECTTSTTGGGCS
T ss_pred eEEccCCcCccccC
Confidence 99999999987665
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=5.6e-06 Score=59.50 Aligned_cols=102 Identities=14% Similarity=0.119 Sum_probs=77.1
Q ss_pred CCccEEEeecc-cccc-----cCCC-CCCCCccEEEcccCCCCcccc----hhHhcCCCCCcEEecCCcccee------e
Q 039257 66 ENVRRLSLMQN-QIET-----LSEV-PTCPHFVTLFLDFNGELKMIA----DGFFQLMPSLKVLKMSNCWNLK------F 128 (210)
Q Consensus 66 ~~l~~L~l~~~-~~~~-----l~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~------l 128 (210)
+.++.|++++| .+.. +... ...++|++|+++ ++.+..-. ...+...+.|++|++++| .++ +
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls-~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l 113 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-GTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL 113 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-TSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc-CCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence 57999999998 7753 2121 556789999999 88887422 122556789999999999 887 2
Q ss_pred cccccCCCcCCEEec--cCCcCcc-----cchhhhcCCCCcEEEccCC
Q 039257 129 LVGMSKLGSLQLLDI--SQNAIEE-----LPEELKLLINLTCLNLRGT 169 (210)
Q Consensus 129 ~~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~ 169 (210)
...+.....|++|++ ++|.+.. +...+...++|+.|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 466777788999999 8898873 3345566789999999998
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=4e-05 Score=60.95 Aligned_cols=126 Identities=15% Similarity=0.277 Sum_probs=82.2
Q ss_pred CCCccEEEeecccccc--cCCC--CCCCCccEEEcccC-C------CCcccchhHh--cCCCCCcEEecCCcccee--ec
Q 039257 65 WENVRRLSLMQNQIET--LSEV--PTCPHFVTLFLDFN-G------ELKMIADGFF--QLMPSLKVLKMSNCWNLK--FL 129 (210)
Q Consensus 65 ~~~l~~L~l~~~~~~~--l~~~--~~~~~L~~L~l~~~-~------~~~~~~~~~~--~~l~~L~~L~l~~~~~~~--l~ 129 (210)
.++|+.|.+..+.+.. +... ..+++|+.|+++.+ + .+..+... + ..+++|++|++.+| .+. .+
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~-l~~~~~p~Lr~L~L~~~-~i~~~~~ 269 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL-FSKDRFPNLKWLGIVDA-EEQNVVV 269 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG-SCTTTCTTCCEEEEESC-TTHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH-HhcCCCCCcCEEeCCCC-CCchHHH
Confidence 5789999999887653 1111 36889999988521 1 12222222 2 35899999999998 765 33
Q ss_pred ccc---cCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCcccccC-CCCCCeEEeeccc
Q 039257 130 VGM---SKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPRQLISN-FSRLRGLRKFITC 195 (210)
Q Consensus 130 ~~~---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~-l~~L~~L~l~~~~ 195 (210)
..+ ..+++|++|+++.|.+.. ++..+.++++|+.|++++| .++.--...+.. + ...++++.+.
T Consensus 270 ~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHHHHc--CCEEEecCCc
Confidence 222 357899999999998874 4455567899999999998 554322111222 2 3567777665
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.00041 Score=55.12 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=80.1
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINL 161 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 161 (210)
..+..|+.+.+. .+ ++.++...|.++.+|+.+.+..+ +. ++ ..+.++.+|+.+.+..+.++.++ ..+.++.+|
T Consensus 237 ~~~~~L~~i~lp-~~-v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 237 YGMKALDEIAIP-KN-VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTCSSCCEEEEC-TT-CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cCCccceEEEcC-CC-ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 556677777775 33 66677666778888888887654 44 53 56777888888888877777765 456778888
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhh
Q 039257 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWE 206 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~ 206 (210)
+.+.+..+ ++.++..+|.++++|+.+.+..+ ...+...+|.
T Consensus 313 ~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~ 353 (379)
T 4h09_A 313 SSVTLPTA--LKTIQVYAFKNCKALSTISYPKS--ITLIESGAFE 353 (379)
T ss_dssp CEEECCTT--CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTT
T ss_pred CEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhh
Confidence 88888654 77787777888888888877433 2445555554
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.49 E-value=0.00022 Score=48.06 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=31.2
Q ss_pred EEeccCCcCc--ccchhhhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeeccccC
Q 039257 140 LLDISQNAIE--ELPEELKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCAS 197 (210)
Q Consensus 140 ~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~ 197 (210)
.++-+++.++ .+|..+ ..++++|+|++| .++.+|..+|..+++|+.|++.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 4455555555 555432 234666666666 566666555566666666666666553
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.22 E-value=0.0036 Score=50.01 Aligned_cols=104 Identities=18% Similarity=0.298 Sum_probs=75.9
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-ec-ccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-FL-VGMSKLGSLQLLDISQNAIEELP-EELKLLINL 161 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 161 (210)
..+..|+.+.+. .. +..++...|.++..|+.+.+.. .++ ++ ..|.++.+|+.+.+..+ ++.+. ..+.++.+|
T Consensus 262 ~~c~~L~~i~lp-~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 262 DSCAYLASVKMP-DS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTCSSCCEEECC-TT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eecccccEEecc-cc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 556777777775 33 4456666688888888888864 455 64 66778888888888754 55554 456788889
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCCeEEeeccc
Q 039257 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITC 195 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~ 195 (210)
+.+.+..+ ++.++..+|.++++|+.+++.++.
T Consensus 337 ~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPSS--VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECTT--CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECcc--cCEEhHhHhhCCCCCCEEEECCce
Confidence 98888644 788887778888999998887654
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.99 E-value=0.0096 Score=47.52 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=64.4
Q ss_pred cchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcccc
Q 039257 104 IADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQLI 180 (210)
Q Consensus 104 ~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~~~ 180 (210)
++...|..+.+|+.+.+..+ ++ + ..++.++.+|+.+++.. .++.++ ..+.++.+|+.+++..+ +..++..+|
T Consensus 288 i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF 362 (394)
T 4fs7_A 288 VPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAF 362 (394)
T ss_dssp ECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTB
T ss_pred eccccccccccccccccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHh
Confidence 44444677788888887654 55 5 46677888999988864 366664 46678899999988765 788888778
Q ss_pred cCCCCCCeEEeecc
Q 039257 181 SNFSRLRGLRKFIT 194 (210)
Q Consensus 181 ~~l~~L~~L~l~~~ 194 (210)
..+++|+.+.+..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 99999999998654
No 159
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.97 E-value=0.0002 Score=60.09 Aligned_cols=38 Identities=8% Similarity=-0.099 Sum_probs=32.4
Q ss_pred hHHHHHhHhccceecC---CCeeEehHHHHHHHHHHHhhhc
Q 039257 5 YIVGTLVHVCLLEEIE---DDKVKMLDVVRDMALWIACETE 42 (210)
Q Consensus 5 ~~~~~L~~~~l~~~~~---~~~~~~hd~~~~~~~~~~~~~~ 42 (210)
+||++|++++|+++.. ...|+|||++|++|+.++.+.+
T Consensus 432 ~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 432 DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 3999999999999853 5689999999999998876544
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.93 E-value=0.019 Score=45.45 Aligned_cols=115 Identities=12% Similarity=0.206 Sum_probs=85.7
Q ss_pred CCCCCccEEEcccCCCCcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCC
Q 039257 85 PTCPHFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINL 161 (210)
Q Consensus 85 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L 161 (210)
..+..++.+.+. . .+..++...|.++..|+.+.+..+ ++ + ...+.++..|+.+.+..+ ++.++ ..+..+.+|
T Consensus 214 ~~~~~l~~i~~~-~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 214 SYGKNLKKITIT-S-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTCSSCSEEECC-T-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccceeeec-c-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 445667777664 3 356666666888889999888765 44 5 466777888998888653 55555 356788999
Q ss_pred cEEEccCCCCCCCCCcccccCCCCCCeEEeeccccCCCcchhhhhh
Q 039257 162 TCLNLRGTGQLNKIPRQLISNFSRLRGLRKFITCASSQLKVSTWEN 207 (210)
Q Consensus 162 ~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~~~~~~~~~~~~f~~ 207 (210)
+.+.+.++ .++.++...|.++.+|+.+.+..+ ...++..+|.+
T Consensus 289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 331 (379)
T 4h09_A 289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKN 331 (379)
T ss_dssp CEEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred cccccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhC
Confidence 99999887 788998888999999999999543 35677777765
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.82 E-value=0.0048 Score=49.27 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=19.9
Q ss_pred hhcCCCCcEEEccCCCCCCCCCcccccCCCCCCeEEeec
Q 039257 155 LKLLINLTCLNLRGTGQLNKIPRQLISNFSRLRGLRKFI 193 (210)
Q Consensus 155 ~~~l~~L~~L~l~~~~~~~~lp~~~~~~l~~L~~L~l~~ 193 (210)
+.++.+|+.+.+..+ +..++...+..+.+|+.+.+..
T Consensus 158 F~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 158 FATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred hcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 445556666666443 3445554455566666655543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.80 E-value=0.0073 Score=48.21 Aligned_cols=102 Identities=18% Similarity=0.238 Sum_probs=77.1
Q ss_pred CcccchhHhcCCCCCcEEecCCccceee-cccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccCCCCCCCCCcc
Q 039257 101 LKMIADGFFQLMPSLKVLKMSNCWNLKF-LVGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRGTGQLNKIPRQ 178 (210)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~lp~~ 178 (210)
+..+....|.++..|+.+.+..+ ...+ ...+.++..|+.+.+. +.++.++ ..+.++.+|+.+++..+ ++.++..
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~ 328 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD 328 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred ceEcccceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence 33455555788888999988776 4444 5677888999999886 3566665 45678899999999764 7888887
Q ss_pred cccCCCCCCeEEeeccccCCCcchhhhhhc
Q 039257 179 LISNFSRLRGLRKFITCASSQLKVSTWENL 208 (210)
Q Consensus 179 ~~~~l~~L~~L~l~~~~~~~~~~~~~f~~l 208 (210)
.|..+++|+.+.+..+ ...++..+|.+.
T Consensus 329 aF~~C~~L~~i~ip~s--v~~I~~~aF~~C 356 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS--VTKIPESAFSNC 356 (394)
T ss_dssp TTTTCTTCCEEEECTT--CCBCCGGGGTTC
T ss_pred HhhCCCCCCEEEECcc--cCEEhHhHhhCC
Confidence 8999999999999543 367788888753
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0088 Score=40.09 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=24.2
Q ss_pred CccEEEcccCCCCcccchhHhcCCCCCcEEecCCc
Q 039257 89 HFVTLFLDFNGELKMIADGFFQLMPSLKVLKMSNC 123 (210)
Q Consensus 89 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 123 (210)
+++.|+++ +|.++.++.+.|..+++|++|++++|
T Consensus 32 ~l~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLT-GNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECT-TSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECC-CCcCCccChhhhhhccccCEEEecCC
Confidence 46667777 77777777666677777777777777
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.00 E-value=0.053 Score=39.03 Aligned_cols=107 Identities=8% Similarity=0.049 Sum_probs=64.1
Q ss_pred CCCccEEEcccCC-CCcccc----hhHhcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----
Q 039257 87 CPHFVTLFLDFNG-ELKMIA----DGFFQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE----- 150 (210)
Q Consensus 87 ~~~L~~L~l~~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~----- 150 (210)
-+.|+.|+++ ++ .+..-. ...+..-..|+.|++++| .+. +.+.+..=..|+.|+|++|.|..
T Consensus 40 n~~L~~L~L~-~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 40 DTDLKEVNIN-NMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp CSSCCEEECT-TCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCCccEEECC-CCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 4567788887 53 555311 122556678888888888 776 12333344678888888888772
Q ss_pred cchhhhcCCCCcEEEccCCCCCCCCCc-------ccccCCCCCCeEEeecccc
Q 039257 151 LPEELKLLINLTCLNLRGTGQLNKIPR-------QLISNFSRLRGLRKFITCA 196 (210)
Q Consensus 151 lp~~~~~l~~L~~L~l~~~~~~~~lp~-------~~~~~l~~L~~L~l~~~~~ 196 (210)
+-+.+..-+.|+.|++++| ....+.. .++..=+.|+.|+++.|..
T Consensus 118 la~aL~~N~tL~~L~L~n~-~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ-RQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC-SSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCC-cCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 2233344456888888765 2212221 1133446788888876654
No 165
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.44 E-value=0.025 Score=51.53 Aligned_cols=40 Identities=15% Similarity=-0.036 Sum_probs=33.5
Q ss_pred hHhhHHHHHhHhccceecCCC---eeEehHHHHHHHHHHHhhh
Q 039257 2 RGYYIVGTLVHVCLLEEIEDD---KVKMLDVVRDMALWIACET 41 (210)
Q Consensus 2 ~~~~~~~~L~~~~l~~~~~~~---~~~~hd~~~~~~~~~~~~~ 41 (210)
.++.++++|++++|++..... .|+|||+++++++..+.+.
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 478899999999999986543 5999999999999876543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.95 E-value=0.19 Score=36.15 Aligned_cols=85 Identities=13% Similarity=0.095 Sum_probs=59.3
Q ss_pred hcCCCCCcEEecCCcccee------ecccccCCCcCCEEeccCCcCcc-----cchhhhcCCCCcEEEccCCCCCCCCCc
Q 039257 109 FQLMPSLKVLKMSNCWNLK------FLVGMSKLGSLQLLDISQNAIEE-----LPEELKLLINLTCLNLRGTGQLNKIPR 177 (210)
Q Consensus 109 ~~~l~~L~~L~l~~~~~~~------l~~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~~lp~ 177 (210)
...-+.|+.|+++++..+. +.+.+..=..|+.|++++|.+.. +...+..=+.|+.|+|+.| .++.-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 4567789999998742443 34556666789999999998873 2234445578999999999 6654221
Q ss_pred ----ccccCCCCCCeEEeecc
Q 039257 178 ----QLISNFSRLRGLRKFIT 194 (210)
Q Consensus 178 ----~~~~~l~~L~~L~l~~~ 194 (210)
+.+..=+.|+.|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 12445567999999765
No 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.61 E-value=0.19 Score=45.42 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=29.1
Q ss_pred hHhhHHHHHhHhccceec-CCCeeEehHHHHHHHH
Q 039257 2 RGYYIVGTLVHVCLLEEI-EDDKVKMLDVVRDMAL 35 (210)
Q Consensus 2 ~~~~~~~~L~~~~l~~~~-~~~~~~~hd~~~~~~~ 35 (210)
.++.++++|++++||+.. ....|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 478899999999999985 3678999999998653
No 168
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.89 E-value=0.37 Score=40.40 Aligned_cols=36 Identities=17% Similarity=-0.036 Sum_probs=30.4
Q ss_pred hHhhHHHHHhHhccceecC---CCeeEehHHHHHHHHHH
Q 039257 2 RGYYIVGTLVHVCLLEEIE---DDKVKMLDVVRDMALWI 37 (210)
Q Consensus 2 ~~~~~~~~L~~~~l~~~~~---~~~~~~hd~~~~~~~~~ 37 (210)
.++.++++|++++||+... ...|+||+++++++...
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 3678999999999998643 35799999999999866
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.87 E-value=8.9 Score=23.92 Aligned_cols=43 Identities=9% Similarity=0.063 Sum_probs=19.0
Q ss_pred CcccchhHhcCCCCCcEEecCCcccee-e-cccccCCCcCCEEeccC
Q 039257 101 LKMIADGFFQLMPSLKVLKMSNCWNLK-F-LVGMSKLGSLQLLDISQ 145 (210)
Q Consensus 101 ~~~~~~~~~~~l~~L~~L~l~~~~~~~-l-~~~~~~l~~L~~L~l~~ 145 (210)
++.+....|.++.+|+.+.+..+ ++ + ..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 33444444455555555544443 22 2 23444444554444443
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.54 E-value=18 Score=22.42 Aligned_cols=38 Identities=18% Similarity=0.079 Sum_probs=19.2
Q ss_pred ccccCCCcCCEEeccCCcCcccc-hhhhcCCCCcEEEccC
Q 039257 130 VGMSKLGSLQLLDISQNAIEELP-EELKLLINLTCLNLRG 168 (210)
Q Consensus 130 ~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~ 168 (210)
..|.++..|+.+.+-.+ ++.+. ..+.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 44555666665555442 23332 2345556666665544
Done!