Query 039261
Match_columns 182
No_of_seqs 134 out of 681
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:11:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x6i_A Hypothetical protein YG 99.9 8E-28 2.7E-32 178.8 9.3 74 68-147 10-83 (91)
2 2lm4_A Succinate dehydrogenase 99.9 1.4E-27 4.6E-32 183.4 9.4 84 58-144 17-103 (109)
3 2jr5_A UPF0350 protein VC_2471 99.9 7.3E-27 2.5E-31 174.8 9.1 73 68-146 8-80 (94)
4 1puz_A Conserved hypothetical 99.9 8E-27 2.8E-31 170.5 8.5 72 68-145 10-81 (82)
5 3erm_A Uncharacterized conserv 48.0 41 0.0014 24.7 5.6 46 79-124 32-77 (91)
6 4adn_A FAR1; antibiotic resist 34.8 27 0.00092 29.3 3.2 69 92-172 55-136 (222)
7 2fbh_A Transcriptional regulat 33.6 62 0.0021 22.4 4.6 27 84-110 111-137 (146)
8 1okr_A MECI, methicillin resis 33.1 46 0.0016 23.0 3.8 22 89-110 98-121 (123)
9 3oop_A LIN2960 protein; protei 33.0 63 0.0022 22.6 4.6 29 82-110 108-136 (143)
10 4aik_A Transcriptional regulat 32.7 59 0.002 23.8 4.5 30 81-110 102-131 (151)
11 1lj9_A Transcriptional regulat 32.4 66 0.0023 22.4 4.6 29 83-111 101-129 (144)
12 2nnn_A Probable transcriptiona 32.3 67 0.0023 22.1 4.5 26 85-110 112-137 (140)
13 3jw4_A Transcriptional regulat 31.7 62 0.0021 22.9 4.3 30 81-110 113-142 (148)
14 3boq_A Transcriptional regulat 31.5 67 0.0023 22.8 4.6 28 84-111 121-148 (160)
15 3ech_A MEXR, multidrug resista 31.4 69 0.0024 22.4 4.5 28 83-110 109-136 (142)
16 3euh_C MUKE, chromosome partit 31.3 55 0.0019 27.8 4.5 68 77-149 86-161 (234)
17 2wl8_A Peroxisomal biogenesis 31.3 68 0.0023 24.6 4.7 39 68-110 28-66 (126)
18 3eco_A MEPR; mutlidrug efflux 31.2 71 0.0024 22.1 4.5 27 84-110 106-132 (139)
19 1n1f_A Interleukin-19; cytokin 31.0 21 0.00073 28.2 1.9 22 76-98 136-157 (159)
20 3s2w_A Transcriptional regulat 30.8 71 0.0024 22.9 4.6 30 81-110 120-149 (159)
21 3bja_A Transcriptional regulat 30.7 75 0.0026 21.8 4.6 25 86-110 108-132 (139)
22 3kp7_A Transcriptional regulat 30.4 65 0.0022 22.8 4.3 31 81-111 109-139 (151)
23 3bpv_A Transcriptional regulat 30.1 76 0.0026 21.8 4.5 27 85-111 103-129 (138)
24 3fm5_A Transcriptional regulat 29.7 75 0.0026 22.5 4.5 35 76-110 102-139 (150)
25 2g9w_A Conserved hypothetical 29.3 37 0.0013 24.6 2.8 26 86-111 96-121 (138)
26 1k61_A Mating-type protein alp 29.2 89 0.003 19.5 4.4 38 85-122 12-51 (60)
27 3tgn_A ADC operon repressor AD 29.0 44 0.0015 23.4 3.1 40 71-110 94-139 (146)
28 3bro_A Transcriptional regulat 29.0 83 0.0028 21.7 4.6 26 85-110 110-135 (141)
29 3deu_A Transcriptional regulat 28.2 80 0.0027 23.2 4.6 36 76-111 116-154 (166)
30 2eth_A Transcriptional regulat 27.5 88 0.003 22.3 4.6 27 85-111 118-144 (154)
31 2rdp_A Putative transcriptiona 26.6 92 0.0032 21.8 4.5 25 86-110 117-141 (150)
32 2wiu_B HTH-type transcriptiona 26.4 34 0.0011 22.2 1.9 40 96-143 25-64 (88)
33 3cjn_A Transcriptional regulat 26.2 94 0.0032 22.2 4.6 25 86-110 127-151 (162)
34 2dmn_A Homeobox protein TGIF2L 25.7 1.1E+02 0.0037 20.8 4.6 40 84-123 20-61 (83)
35 3k0l_A Repressor protein; heli 25.6 95 0.0032 22.4 4.5 27 85-111 120-146 (162)
36 2gxg_A 146AA long hypothetical 25.6 1E+02 0.0034 21.4 4.5 26 86-111 111-136 (146)
37 2nyx_A Probable transcriptiona 25.1 87 0.003 22.8 4.3 27 85-111 119-145 (168)
38 2hr3_A Probable transcriptiona 24.5 82 0.0028 22.0 3.9 26 85-110 110-136 (147)
39 3k2a_A Homeobox protein MEIS2; 24.4 1.2E+02 0.0041 19.7 4.5 40 84-123 11-52 (67)
40 3a4c_A DNA replication factor 24.4 64 0.0022 24.3 3.3 47 68-114 22-68 (106)
41 3bj6_A Transcriptional regulat 24.4 1.1E+02 0.0037 21.4 4.5 27 85-111 114-140 (152)
42 2fbi_A Probable transcriptiona 24.4 61 0.0021 22.3 3.1 25 86-110 111-135 (142)
43 3nrv_A Putative transcriptiona 24.1 90 0.0031 21.8 4.0 26 85-110 114-139 (148)
44 2icg_A LIN2918 protein; hypoth 23.9 1.4E+02 0.0049 22.0 5.4 29 95-123 25-53 (160)
45 2fa5_A Transcriptional regulat 23.2 1.2E+02 0.0039 21.6 4.5 26 85-110 123-148 (162)
46 3bs3_A Putative DNA-binding pr 22.9 1.3E+02 0.0045 18.5 4.3 29 96-127 23-51 (76)
47 3e6m_A MARR family transcripti 22.8 1.2E+02 0.0041 21.8 4.6 26 85-110 127-152 (161)
48 1s3j_A YUSO protein; structura 22.0 1.3E+02 0.0044 21.1 4.5 26 86-111 112-137 (155)
49 3rjp_A COVR; winged helix-turn 21.3 1.9E+02 0.0065 19.3 6.8 52 96-151 22-78 (96)
50 2xi8_A Putative transcription 21.3 1.3E+02 0.0044 17.9 3.9 29 96-127 14-42 (66)
51 2qww_A Transcriptional regulat 21.1 88 0.003 22.0 3.5 25 86-110 120-144 (154)
52 1x2n_A Homeobox protein pknox1 21.0 1.5E+02 0.005 19.3 4.4 39 85-123 21-61 (73)
53 1sd4_A Penicillinase repressor 20.8 95 0.0033 21.4 3.6 16 95-110 106-121 (126)
54 2a61_A Transcriptional regulat 20.7 79 0.0027 21.9 3.1 26 86-111 108-133 (145)
55 3omt_A Uncharacterized protein 20.6 1.5E+02 0.005 18.5 4.2 29 96-127 21-49 (73)
56 1akh_A Protein (mating-type pr 20.4 1.6E+02 0.0054 18.3 4.3 40 81-122 16-55 (61)
57 3u2r_A Regulatory protein MARR 20.2 59 0.002 23.7 2.4 27 85-111 122-148 (168)
No 1
>1x6i_A Hypothetical protein YGFY; structural genomics, transcriptional regulation, structure 2 function project, S2F, unknown function; 1.20A {Escherichia coli} PDB: 1x6j_A
Probab=99.95 E-value=8e-28 Score=178.81 Aligned_cols=74 Identities=20% Similarity=0.521 Sum_probs=69.1
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhh
Q 039261 68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNL 147 (182)
Q Consensus 68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~ 147 (182)
+||+||| ||||+|||||||+|+++|+++||++|+++|+.||+++|+|||+|++|+++|| ++.+..|+++|++..
T Consensus 10 ~RL~~rs-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~w~~g~~~~p-----~~~~~~l~~~I~~~~ 83 (91)
T 1x6i_A 10 ARIHWAC-RRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPA-----DAELEMMVRLIQTRN 83 (91)
T ss_dssp HHHHHHT-CCSSHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHTSCHHHHHHHHTTSSBCS-----SHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHCCCCCC-----CHHHHHHHHHHHHHH
Confidence 4799999 9999999999999999999999999999999999999999999999999999 577888888888543
No 2
>2lm4_A Succinate dehydrogenase assembly factor 2, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.4e-27 Score=183.41 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCC---CCCCCCCCCCH
Q 039261 58 SNDEKKKRLFNRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQ---EQPPEAVKTNP 134 (182)
Q Consensus 58 s~~E~krrl~kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~---~~pPe~~~~d~ 134 (182)
.+.+.++ +||+|||+||||+|||||||+|+++++++||++|+++|+.||+++|+|||+|++|+ +++|+++...+
T Consensus 17 e~~~~rr---~RL~~rs~rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~wl~g~~~~~~~P~~~~~~~ 93 (109)
T 2lm4_A 17 EPLDKKR---ARLIYQSRKRGILETDLLLSGFAAKYLKKMNEEELEEYDSLLNELDWDIYYWATKNFKTSPLPDKWANSK 93 (109)
T ss_dssp SCHHHHH---HHHHHHHSCCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTSCHHHHHHHHTTCTTTSCCCHHHHTCH
T ss_pred CChHHHH---HHHHHHHhcccHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCCCCchhhHHH
Confidence 3455554 49999999999999999999999999999999999999999999999999999998 78887764347
Q ss_pred HHHHHHHHHH
Q 039261 135 VFSALHNKVM 144 (182)
Q Consensus 135 ~~~~Li~~Ir 144 (182)
+++.|++++.
T Consensus 94 i~~~Ir~~~~ 103 (109)
T 2lm4_A 94 LLKQLQEFSE 103 (109)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 3
>2jr5_A UPF0350 protein VC_2471; structure, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Vibrio cholerae}
Probab=99.94 E-value=7.3e-27 Score=174.78 Aligned_cols=73 Identities=30% Similarity=0.600 Sum_probs=66.6
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHh
Q 039261 68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNN 146 (182)
Q Consensus 68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~ 146 (182)
+||+|+| ||||+|||||||+|+++++++||++|+++|+.||+++|+|||+|++|+++|| ++....|++.|++.
T Consensus 8 ~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~W~~g~~~~p-----~~~~~~lv~~I~~~ 80 (94)
T 2jr5_A 8 ARIKWAC-RRGMLELDVVIMPFFEECFDSLTESEQDDFVALLESDDPDLFAWVMGHGRCE-----NLGLAAMVDKIVAH 80 (94)
T ss_dssp HHHHHHH-CCSSHHHHHTTTTHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHTCCCCS-----CHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCC-----CHHHHHHHHHHHHH
Confidence 4899966 9999999999999999999999999999999999999999999999999999 46677777777753
No 4
>1puz_A Conserved hypothetical protein; NMA1147, MR19, structural genomics, PSI, protein structure initiative; NMR {Neisseria meningitidis} SCOP: a.218.1.1
Probab=99.94 E-value=8e-27 Score=170.52 Aligned_cols=72 Identities=18% Similarity=0.562 Sum_probs=66.8
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHH
Q 039261 68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMN 145 (182)
Q Consensus 68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~ 145 (182)
+||+|+| ||||+|+|||||+|+++|+++||++|+++|+.||+++|+|||+|++|+++||+ +.+..|+++|++
T Consensus 10 ~RL~~~~-rRGmlElDllL~~F~~~~~~~ls~~el~~f~~LL~~~D~DL~~w~~g~~~~p~-----~~~~~lv~~I~~ 81 (82)
T 1puz_A 10 RKIRFQT-RRGLLELDLIFGRFMEKEFEHLSDKELSEFSEILEFQDQELLALINGHSETDK-----GHLIPMLEKIRR 81 (82)
T ss_dssp HHHHHHS-CCSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHTSCHHHHHHHHHTCSCCSC-----TTHHHHHHHHHH
T ss_pred HHHHHHh-hcchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHhCCCCCCC-----HHHHHHHHHHHh
Confidence 4799976 99999999999999999999999999999999999999999999999999994 667888888774
No 5
>3erm_A Uncharacterized conserved protein; APC85034, ppspto1197, seudomonas syringae PV. tomato STR. DC structural genomics, PSI-2; HET: MSE; 2.45A {Pseudomonas syringae PV}
Probab=47.97 E-value=41 Score=24.73 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=36.3
Q ss_pred hhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhCCC
Q 039261 79 FLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTGQE 124 (182)
Q Consensus 79 mlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~ 124 (182)
|+|+==-|..|+.+....|++++.+++--+|..+--.+..-|-|+.
T Consensus 32 MLdlAd~L~~~L~~~~~~ldE~~~E~l~l~LA~nkd~l~~~lKgkp 77 (91)
T 3erm_A 32 MLELAELLTDVLIKNVPGLSEKHAEDASIYMAKNRAVFAAAFKNNA 77 (91)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHTTHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence 7777778899999999999999999998888876655555555543
No 6
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=34.84 E-value=27 Score=29.29 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHhcCCCHHHHHHHHHHhcCC-CH--------HHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q 039261 92 EHIHSMDENGIKALVDVLNLE-NP--------DLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYASPETRSEPGQP 162 (182)
Q Consensus 92 ~~l~~Lse~el~~Fe~LLd~e-D~--------DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~~~~~~~e~r~~p~~~ 162 (182)
.-++.+++++.+.++.|.+.. +. +|-.|+..-.++.+ . .|++.|.....-..+.-...+
T Consensus 55 ~~f~~~~~eq~~lL~~i~~~~lt~~~~e~~L~~Lk~yV~pm~~lTe-----~-------qIrk~F~kaKkLklPdl~~~d 122 (222)
T 4adn_A 55 EIFGHIDDDIEESLKVLMNIRLSNKEIEAILNKFLEYVVPFELPSP-----Q-------KLQKVFKKVKKIKIPQFEEYD 122 (222)
T ss_dssp TTCSSCCHHHHHHHHHHTSTTCCHHHHHHHHHHHHTTBCCCCCCCH-----H-------HHHHHTTTSTTCCCCCCCHHH
T ss_pred HHcccCCHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcCCCCCCH-----H-------HHHHHhhhhhccCCCCcccCC
Confidence 446899999999999999988 53 35555555555552 2 444444442222222344557
Q ss_pred Ccc----cccccCC
Q 039261 163 WVR----GWDDFKK 172 (182)
Q Consensus 163 w~r----gw~d~~~ 172 (182)
|-+ ||.|.+-
T Consensus 123 w~~l~yLGW~D~~~ 136 (222)
T 4adn_A 123 LKVSSFVGWNELAS 136 (222)
T ss_dssp HHTCSEEEEEEGGG
T ss_pred cccCceEeeecCCC
Confidence 876 9999764
No 7
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=33.57 E-value=62 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=21.4
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 84 LVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 84 LLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
-.+..+.+..+..++++|++.|..+|+
T Consensus 111 ~~~~~~~~~~~~~l~~~e~~~l~~~l~ 137 (146)
T 2fbh_A 111 AIAASVRNDVLTGIDESEQALCQQVLL 137 (146)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344566677788999999999998886
No 8
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.11 E-value=46 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.9
Q ss_pred HHHHHh--cCCCHHHHHHHHHHhc
Q 039261 89 WVEEHI--HSMDENGIKALVDVLN 110 (182)
Q Consensus 89 F~~~~l--~~Lse~el~~Fe~LLd 110 (182)
++...+ ..|+++|+++|..+|+
T Consensus 98 ~~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 98 LVLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHh
Confidence 344555 8999999999999986
No 9
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=33.02 E-value=63 Score=22.60 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 82 LDLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 82 LDLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+.-....+.+..+..|+++|++.|..+|+
T Consensus 108 ~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 136 (143)
T 3oop_A 108 LRDIVEASCEKMFAGVTRTDLEQFTAILK 136 (143)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33345566777788999999999998886
No 10
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=32.74 E-value=59 Score=23.82 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 81 ELDLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 81 ELDLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
++.-....+.+..+..|+++|++.|..+|+
T Consensus 102 ~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~ 131 (151)
T 4aik_A 102 QVDGVISSTRKEILGGISSDEIAVLSGLID 131 (151)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 344455667778889999999999998886
No 11
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=32.37 E-value=66 Score=22.37 Aligned_cols=29 Identities=17% Similarity=0.032 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 83 DLVLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 83 DLLLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.-.+..+.+..+..++++|++.|..+|+.
T Consensus 101 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (144)
T 1lj9_A 101 VRENQHSNQVALQGLSEVEISQLADYLVR 129 (144)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566778889999999999988863
No 12
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=32.27 E-value=67 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.088 Sum_probs=21.2
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+..+.+..+..++++|++.|..+|+
T Consensus 112 ~~~~~~~~~~~~l~~~e~~~l~~~l~ 137 (140)
T 2nnn_A 112 AAREINRQALAPLSLQEQETLRGLLA 137 (140)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34566777788999999999998886
No 13
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=31.66 E-value=62 Score=22.87 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=23.4
Q ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 81 ELDLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 81 ELDLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
++.-....+.+..+..++++|++.|..+|+
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 142 (148)
T 3jw4_A 113 EFNNIFLEVEESITKGLTKDEQKQLMSILI 142 (148)
T ss_dssp HHHHHHHHHHHHTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 334455667777889999999999998886
No 14
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=31.54 E-value=67 Score=22.84 Aligned_cols=28 Identities=7% Similarity=0.105 Sum_probs=21.6
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 84 LVLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 84 LLLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
-.+..+.+..+..++++|++.|..+|+.
T Consensus 121 ~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 148 (160)
T 3boq_A 121 EAHNRILAELLRAVSDQDMVEASAALRG 148 (160)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445666777889999999999988863
No 15
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=31.40 E-value=69 Score=22.44 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=22.1
Q ss_pred HHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 83 DLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 83 DLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.-.+..+.+..+..++++|++.|..+|+
T Consensus 109 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 136 (142)
T 3ech_A 109 ELIMSRVHDELFAPLTPVEQATLVHLLD 136 (142)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3345666777788999999999998885
No 16
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_G
Probab=31.35 E-value=55 Score=27.77 Aligned_cols=68 Identities=22% Similarity=0.275 Sum_probs=47.8
Q ss_pred cchhHHHHhHHHHHHHHhcC---CCH----HHHHHHHHHhcC-CCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhh
Q 039261 77 RGFLELDLVLGKWVEEHIHS---MDE----NGIKALVDVLNL-ENPDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLN 148 (182)
Q Consensus 77 RGmlELDLLLg~F~~~~l~~---Lse----~el~~Fe~LLd~-eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~~ 148 (182)
+=+-|+|.++|..+---|-+ |.. ...+-|++|+.+ +..-|+.++..+..-. |-..+.|.+++++.+.
T Consensus 86 s~LSEleMlvGkvLc~lYLsperLa~~gift~qeL~eeL~sl~dE~kLlkl~~~R~~GS-----DlD~~kl~ekv~~sLr 160 (234)
T 3euh_C 86 SVLSELDMMVGKILCYLYLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGS-----DVDRQKLQEKVRSSLN 160 (234)
T ss_dssp EECCHHHHHHHHHHHHHHHCGGGGGGTTEEEHHHHHHHHHHHSCHHHHHHHHSSSCSSC-----HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHcCHHHHhcCCcccHHHHHHHHHHhhCHHHHHHHHhccCCCc-----hhhHHHHHHHHHHHHH
Confidence 44789999999988654322 333 234568888886 5588999998666553 5668888888887665
Q ss_pred h
Q 039261 149 S 149 (182)
Q Consensus 149 ~ 149 (182)
.
T Consensus 161 r 161 (234)
T 3euh_C 161 R 161 (234)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=31.28 E-value=68 Score=24.56 Aligned_cols=39 Identities=18% Similarity=0.368 Sum_probs=34.2
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
|=++|-. ||||.-=...|+++|-.+++.++.+.|++=.+
T Consensus 28 KevLYep----mKel~~kyP~WLe~nk~~l~~Ed~~RY~kQ~~ 66 (126)
T 2wl8_A 28 KDVLYPS----LKEITEKYPEWLQSHRESLPPEQFEKYQEQHS 66 (126)
T ss_dssp HHHHHHH----HHHHHTTHHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHhhhcc----HHHHHHHhhHHHHhCcccCCHHHHHHHHHHHH
Confidence 3488888 89999999999999999999999999985444
No 18
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=31.19 E-value=71 Score=22.14 Aligned_cols=27 Identities=7% Similarity=0.156 Sum_probs=21.5
Q ss_pred HhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 84 LVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 84 LLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
-.+..+.+..+..++++|++.|..+|+
T Consensus 106 ~~~~~~~~~~~~~l~~~e~~~l~~~l~ 132 (139)
T 3eco_A 106 SIFDEMEQTLVSQLSEEENEQMKANLT 132 (139)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 345566677788999999999998886
No 19
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=30.97 E-value=21 Score=28.21 Aligned_cols=22 Identities=27% Similarity=0.595 Sum_probs=17.5
Q ss_pred ccchhHHHHhHHHHHHHHhcCCC
Q 039261 76 QRGFLELDLVLGKWVEEHIHSMD 98 (182)
Q Consensus 76 rRGmlELDLLLg~F~~~~l~~Ls 98 (182)
.-.|=|+||+| .|+++++.+.+
T Consensus 136 ~KAiGELDILl-~wie~~~~~~~ 157 (159)
T 1n1f_A 136 IKSLGELDVFL-AWINKNHEVMS 157 (159)
T ss_dssp HHHHHTHHHHH-HHHHHHSCCBC
T ss_pred HHHHHHHHHHH-HHHHHHhhccc
Confidence 44578999998 79999987654
No 20
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=30.76 E-value=71 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.421 Sum_probs=22.9
Q ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 81 ELDLVLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 81 ELDLLLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
++.-.+..+.+..+..++++|++.|..+|+
T Consensus 120 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 149 (159)
T 3s2w_A 120 DMKKIASEWGEILFSSFDDRQRREITNSLE 149 (159)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455666777788999999999998886
No 21
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=30.67 E-value=75 Score=21.79 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+..+.+..+..++++|++.|..+|+
T Consensus 108 ~~~~~~~~~~~l~~~e~~~l~~~l~ 132 (139)
T 3bja_A 108 YSDFLKENCGCFTKEEEGILEDLLL 132 (139)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456667778999999999998886
No 22
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.44 E-value=65 Score=22.84 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=24.6
Q ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 81 ELDLVLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 81 ELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
++.-.+..+.+..+..++++|++.|..+|+-
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 139 (151)
T 3kp7_A 109 ERKAIMSHIASDMTSDFDSKEIEKVRQVLEI 139 (151)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444566777888899999999999998863
No 23
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=30.06 E-value=76 Score=21.80 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..++++|++.|..+|+.
T Consensus 103 ~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (138)
T 3bpv_A 103 VEERWEDLLFRDFTEDERKLFRKMCRR 129 (138)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445666777889999999999988763
No 24
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.71 E-value=75 Score=22.45 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=24.3
Q ss_pred ccchhHHHH---hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 76 QRGFLELDL---VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 76 rRGmlELDL---LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
-.|..-++- .+..+.+..+..++++|++.|..+|+
T Consensus 102 ~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 139 (150)
T 3fm5_A 102 EEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRDTLQ 139 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443333 34455667788999999999998876
No 25
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=29.31 E-value=37 Score=24.63 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
...+....+..||++|+++|..+|+-
T Consensus 96 ~~~~~~~~~~~ls~eE~~~L~~lL~~ 121 (138)
T 2g9w_A 96 RQAALVHFVERVGADEADALRRALAE 121 (138)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555666678999999999999873
No 26
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=29.25 E-value=89 Score=19.53 Aligned_cols=38 Identities=18% Similarity=0.528 Sum_probs=30.2
Q ss_pred hHHHHHHHH--hcCCCHHHHHHHHHHhcCCCHHHHHHHhC
Q 039261 85 VLGKWVEEH--IHSMDENGIKALVDVLNLENPDLWKWLTG 122 (182)
Q Consensus 85 LLg~F~~~~--l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G 122 (182)
+|..++..| -+-.+.++...+..-+.+....+-.|+..
T Consensus 12 ~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 12 ILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp HHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 455566665 45678999999999999999999999864
No 27
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=29.04 E-value=44 Score=23.37 Aligned_cols=40 Identities=13% Similarity=-0.018 Sum_probs=28.0
Q ss_pred HHHhhccchhHHHHhH------HHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 71 LYRSKQRGFLELDLVL------GKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 71 ~wRc~rRGmlELDLLL------g~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+.-.-.|.....-+. ..+....+..++++|++.|..+|+
T Consensus 94 ~~~lT~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 139 (146)
T 3tgn_A 94 FYQLTDLARPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFLT 139 (146)
T ss_dssp CCEECGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred EEEECHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344455655555444 556677888999999999998886
No 28
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=28.97 E-value=83 Score=21.69 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=21.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+..+.+..+..++++|++.|..+|+
T Consensus 110 ~~~~~~~~~~~~l~~~e~~~l~~~l~ 135 (141)
T 3bro_A 110 YMDSDQSQMTSGLNKEEVVFLEKILK 135 (141)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667777788999999999998875
No 29
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=28.17 E-value=80 Score=23.19 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=25.5
Q ss_pred ccchhHHH---HhHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 76 QRGFLELD---LVLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 76 rRGmlELD---LLLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
-.|..-++ -.+..+.+..+..++++|++.|..+|+.
T Consensus 116 ~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 154 (166)
T 3deu_A 116 EKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIAK 154 (166)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44544333 3455666777889999999999988863
No 30
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=27.52 E-value=88 Score=22.27 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=20.4
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..++++|++.|..+|+.
T Consensus 118 ~~~~~~~~~~~~l~~ee~~~l~~~L~~ 144 (154)
T 2eth_A 118 NFESLLKSVLEKFSEEDFKVVSEGFNR 144 (154)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344566677788999999999888763
No 31
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=26.59 E-value=92 Score=21.75 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+..+.+..+..++++|++.|..+|+
T Consensus 117 ~~~~~~~~~~~l~~~e~~~l~~~l~ 141 (150)
T 2rdp_A 117 RQRDLANVLESFSDEEIVVFERCLR 141 (150)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667778999999999998886
No 32
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=26.37 E-value=34 Score=22.17 Aligned_cols=40 Identities=5% Similarity=0.186 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Q 039261 96 SMDENGIKALVDVLNLENPDLWKWLTGQEQPPEAVKTNPVFSALHNKV 143 (182)
Q Consensus 96 ~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~I 143 (182)
.++.++ |...+...-.-|.+|..|+..|. -..+..|.+.+
T Consensus 25 glsq~~---lA~~~gis~~~i~~~e~g~~~~~-----~~~l~~i~~~l 64 (88)
T 2wiu_B 25 GWTQSE---LAKKIGIKQATISNFENNPDNTT-----LTTFFKILQSL 64 (88)
T ss_dssp TCCHHH---HHHHHTCCHHHHHHHHHCGGGCB-----HHHHHHHHHHT
T ss_pred CCCHHH---HHHHhCCCHHHHHHHHcCCCCCC-----HHHHHHHHHHh
Confidence 556443 55667788888999999977665 24455544433
No 33
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=26.22 E-value=94 Score=22.16 Aligned_cols=25 Identities=12% Similarity=0.204 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+..+.+..+..++++|++.|..+|+
T Consensus 127 ~~~~~~~~~~~l~~~e~~~l~~~l~ 151 (162)
T 3cjn_A 127 MRASHDRMFQGITPQERQAFLATLN 151 (162)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4456667778899999999988875
No 34
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=25.66 E-value=1.1e+02 Score=20.81 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=31.9
Q ss_pred HhHHHHHHHH--hcCCCHHHHHHHHHHhcCCCHHHHHHHhCC
Q 039261 84 LVLGKWVEEH--IHSMDENGIKALVDVLNLENPDLWKWLTGQ 123 (182)
Q Consensus 84 LLLg~F~~~~--l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~ 123 (182)
-+|..|+.+| -+-.+.++..++..-+.+....+-.||..+
T Consensus 20 ~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNr 61 (83)
T 2dmn_A 20 KILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINA 61 (83)
T ss_dssp HHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhh
Confidence 3556666655 357899999999999999999999998653
No 35
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=25.59 E-value=95 Score=22.35 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..++++|++.|..+|+-
T Consensus 120 ~~~~~~~~~~~~l~~~e~~~l~~~L~~ 146 (162)
T 3k0l_A 120 VVQQLEAQMLQGVDINLAFLIRNNLEL 146 (162)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455667777889999999999988863
No 36
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=25.58 E-value=1e+02 Score=21.38 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
+..+....+..++++|++.|..+|+.
T Consensus 111 ~~~~~~~~~~~l~~~e~~~l~~~l~~ 136 (146)
T 2gxg_A 111 YKKLANEVTGDLSEDEVILVLDKISK 136 (146)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556667788999999999888863
No 37
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=25.11 E-value=87 Score=22.84 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=20.9
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..++++|++.|..+|+.
T Consensus 119 ~~~~~~~~~~~~l~~ee~~~l~~~L~~ 145 (168)
T 2nyx_A 119 HRRTEIARIVEQMAPAERHGLVRALTA 145 (168)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566677788999999999988864
No 38
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.46 E-value=82 Score=21.96 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=19.8
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIH-SMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~-~Lse~el~~Fe~LLd 110 (182)
.+..+....+. .++++|++.|..+|+
T Consensus 110 ~~~~~~~~~~~~~l~~~e~~~l~~~l~ 136 (147)
T 2hr3_A 110 KREEWLVRAMHACLDESERALLAAAGP 136 (147)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 34455666776 899999999998776
No 39
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=24.42 E-value=1.2e+02 Score=19.74 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=31.6
Q ss_pred HhHHHHHHHHhc--CCCHHHHHHHHHHhcCCCHHHHHHHhCC
Q 039261 84 LVLGKWVEEHIH--SMDENGIKALVDVLNLENPDLWKWLTGQ 123 (182)
Q Consensus 84 LLLg~F~~~~l~--~Lse~el~~Fe~LLd~eD~DLy~Wl~G~ 123 (182)
-+|..|+..|+. -.+.++...+..-+.+....+-.|+..+
T Consensus 11 ~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNr 52 (67)
T 3k2a_A 11 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINA 52 (67)
T ss_dssp HHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHH
Confidence 356666666554 4889999999999999999999998754
No 40
>3a4c_A DNA replication factor CDT1; alpha-beta structure, cell cycle, DNA- binding, nucleus, phosphoprotein, proto-oncogene, UBL conjugation; HET: DNA; 1.89A {Mus musculus} PDB: 2rqq_A*
Probab=24.41 E-value=64 Score=24.27 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHhhccchhHHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCH
Q 039261 68 NRLLYRSKQRGFLELDLVLGKWVEEHIHSMDENGIKALVDVLNLENP 114 (182)
Q Consensus 68 kRL~wRc~rRGmlELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~ 114 (182)
=|..|-+-++|.+-||.++.+-..-|-..|+..|++.-.+||..-=|
T Consensus 22 lR~vFvaEkK~vl~~e~~~~ki~~Syr~~ls~~EmE~hl~lL~ellP 68 (106)
T 3a4c_A 22 LRNVFVSERKPALTMEVVCARMVDSCQTALSPGEMEKHLVLLAELLP 68 (106)
T ss_dssp HHHHHHTCSSSEEEHHHHHHHHHHTSCCSCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcccCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHhCc
Confidence 36789999999999999999999889999999999999999885333
No 41
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=24.40 E-value=1.1e+02 Score=21.43 Aligned_cols=27 Identities=7% Similarity=-0.176 Sum_probs=20.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..++++|++.|..+|+.
T Consensus 114 ~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (152)
T 3bj6_A 114 DEMAKLALFSEGFSSVELTAYHKVQLA 140 (152)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344566667788999999999988763
No 42
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=24.36 E-value=61 Score=22.34 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+..+.+..+..++++|++.|..+|+
T Consensus 111 ~~~~~~~~~~~l~~~e~~~l~~~l~ 135 (142)
T 2fbi_A 111 MEKNYQRIQERFGEEKLAQLLELLN 135 (142)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 4455666677889999999988875
No 43
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.10 E-value=90 Score=21.83 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=19.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+..+.+..+..++++|++.|..+|+
T Consensus 114 ~~~~~~~~~~~~l~~~e~~~l~~~l~ 139 (148)
T 3nrv_A 114 FAIEREKQLLEEFEEAEKDQLFILLK 139 (148)
T ss_dssp HTHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455666778888888888888775
No 44
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=23.89 E-value=1.4e+02 Score=21.97 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=25.9
Q ss_pred cCCCHHHHHHHHHHhcCCCHHHHHHHhCC
Q 039261 95 HSMDENGIKALVDVLNLENPDLWKWLTGQ 123 (182)
Q Consensus 95 ~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~ 123 (182)
...+++++..+|+-|...=|+=|.+++.+
T Consensus 25 ~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~ 53 (160)
T 2icg_A 25 GTGTPELIKIYQDALGNEFPETYKLFLEK 53 (160)
T ss_dssp CCCCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 58899999999999999999999998654
No 45
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.22 E-value=1.2e+02 Score=21.60 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=19.5
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+..+.+..+..++++|++.|..+|+
T Consensus 123 ~~~~~~~~~~~~l~~~e~~~l~~~l~ 148 (162)
T 2fa5_A 123 LVNEMEQRLMSVFSAEEQQTLERLID 148 (162)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34456666778889999888888776
No 46
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=22.94 E-value=1.3e+02 Score=18.49 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 039261 96 SMDENGIKALVDVLNLENPDLWKWLTGQEQPP 127 (182)
Q Consensus 96 ~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pP 127 (182)
.++.+ +|.+.+...-..+..|..|+..|+
T Consensus 23 g~s~~---~lA~~~gis~~~i~~~e~g~~~~~ 51 (76)
T 3bs3_A 23 QRTNR---WLAEQMGKSENTISRWCSNKSQPS 51 (76)
T ss_dssp TCCHH---HHHHHHTCCHHHHHHHHTTSSCCC
T ss_pred CCCHH---HHHHHHCcCHHHHHHHHcCCCCCC
Confidence 45543 456677888899999999988765
No 47
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=22.78 E-value=1.2e+02 Score=21.76 Aligned_cols=26 Identities=15% Similarity=0.454 Sum_probs=20.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
.+..+.+..+..++++|++.|..+|+
T Consensus 127 ~~~~~~~~~~~~l~~~e~~~l~~~L~ 152 (161)
T 3e6m_A 127 LINDFHAELVGNVDPDKLQTCIEVLG 152 (161)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44556667788999999999998886
No 48
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=21.96 E-value=1.3e+02 Score=21.10 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
+..+.+..+..++++|++.|..+|+-
T Consensus 112 ~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (155)
T 1s3j_A 112 RKAIMARYLSFLTEEEMLQAAHITAK 137 (155)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666778888888888887764
No 49
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=21.33 E-value=1.9e+02 Score=19.25 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHhcCCC-----HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHhhhhcC
Q 039261 96 SMDENGIKALVDVLNLEN-----PDLWKWLTGQEQPPEAVKTNPVFSALHNKVMNNLNSYA 151 (182)
Q Consensus 96 ~Lse~el~~Fe~LLd~eD-----~DLy~Wl~G~~~pPe~~~~d~~~~~Li~~Ir~~~~~~~ 151 (182)
.|+..|.+-|..|+...+ .+|++-+-|...++. +..+...+..+|+.+....
T Consensus 22 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~----~~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVE----TNVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp ECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCC----THHHHHHHHHHHHHHCCTT
T ss_pred EcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCC----cchHHHHHHHHHHHhcccC
Confidence 578888888888887755 678888887654442 4678888999998886543
No 50
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=21.31 E-value=1.3e+02 Score=17.86 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 039261 96 SMDENGIKALVDVLNLENPDLWKWLTGQEQPP 127 (182)
Q Consensus 96 ~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pP 127 (182)
.++.+ +|...+...-..+..|..|+..|+
T Consensus 14 g~s~~---~lA~~~gis~~~i~~~e~g~~~~~ 42 (66)
T 2xi8_A 14 KISQS---ELAALLEVSRQTINGIEKNKYNPS 42 (66)
T ss_dssp TCCHH---HHHHHHTSCHHHHHHHHTTSCCCC
T ss_pred CCCHH---HHHHHHCcCHHHHHHHHcCCCCCC
Confidence 56644 456677888899999999988765
No 51
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=21.13 E-value=88 Score=22.03 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhc
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLN 110 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd 110 (182)
+..+.+..+..++++|++.|..+|+
T Consensus 120 ~~~~~~~~~~~l~~~e~~~l~~~l~ 144 (154)
T 2qww_A 120 MYKAMMKVFENLTENEIEELIRLNK 144 (154)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456667778899999999988876
No 52
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.98 E-value=1.5e+02 Score=19.28 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=30.1
Q ss_pred hHHHHHHHH--hcCCCHHHHHHHHHHhcCCCHHHHHHHhCC
Q 039261 85 VLGKWVEEH--IHSMDENGIKALVDVLNLENPDLWKWLTGQ 123 (182)
Q Consensus 85 LLg~F~~~~--l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G~ 123 (182)
+|..|+.+| -+-.+.++...+..-+.+....+-.||..+
T Consensus 21 ~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNr 61 (73)
T 1x2n_A 21 VMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINA 61 (73)
T ss_dssp HHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHH
Confidence 345555554 456799999999999999999999998643
No 53
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=20.76 E-value=95 Score=21.39 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=14.7
Q ss_pred cCCCHHHHHHHHHHhc
Q 039261 95 HSMDENGIKALVDVLN 110 (182)
Q Consensus 95 ~~Lse~el~~Fe~LLd 110 (182)
..||++|+++|..+|+
T Consensus 106 ~~ls~ee~~~l~~~L~ 121 (126)
T 1sd4_A 106 EELNNKEIEELRDILN 121 (126)
T ss_dssp TCSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6899999999999886
No 54
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.74 E-value=79 Score=21.89 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 86 LGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 86 Lg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
+..+.+..+..++++|++.|..+|+.
T Consensus 108 ~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (145)
T 2a61_A 108 RENFIEKITSDLGKEKSSKILDYLKE 133 (145)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555666677889999888887763
No 55
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=20.60 E-value=1.5e+02 Score=18.46 Aligned_cols=29 Identities=24% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHhCCCCCC
Q 039261 96 SMDENGIKALVDVLNLENPDLWKWLTGQEQPP 127 (182)
Q Consensus 96 ~Lse~el~~Fe~LLd~eD~DLy~Wl~G~~~pP 127 (182)
.++..| |...+...-..+..|..|+..|+
T Consensus 21 glsq~~---lA~~~gis~~~is~~e~g~~~~~ 49 (73)
T 3omt_A 21 GKTNLW---LTETLDKNKTTVSKWCTNDVQPS 49 (73)
T ss_dssp TCCHHH---HHHHTTCCHHHHHHHHTTSSCCC
T ss_pred CCCHHH---HHHHHCcCHHHHHHHHcCCCCCC
Confidence 466444 55678888899999999997766
No 56
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=20.44 E-value=1.6e+02 Score=18.31 Aligned_cols=40 Identities=5% Similarity=0.180 Sum_probs=30.5
Q ss_pred HHHHhHHHHHHHHhcCCCHHHHHHHHHHhcCCCHHHHHHHhC
Q 039261 81 ELDLVLGKWVEEHIHSMDENGIKALVDVLNLENPDLWKWLTG 122 (182)
Q Consensus 81 ELDLLLg~F~~~~l~~Lse~el~~Fe~LLd~eD~DLy~Wl~G 122 (182)
.+++|-..|..+ +-.+.++...+..-|.+....+-.|+..
T Consensus 16 q~~~Le~~f~~~--~yp~~~~r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 16 ARAFLEEVFRRK--QSLNSKEKEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp HHHHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 345555555444 4578899999999999999999999864
No 57
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=20.19 E-value=59 Score=23.66 Aligned_cols=27 Identities=11% Similarity=0.341 Sum_probs=21.1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhcC
Q 039261 85 VLGKWVEEHIHSMDENGIKALVDVLNL 111 (182)
Q Consensus 85 LLg~F~~~~l~~Lse~el~~Fe~LLd~ 111 (182)
.+..+.+..+..|+++|++.|..+|+-
T Consensus 122 ~~~~~~~~~~~~l~~~e~~~l~~~L~~ 148 (168)
T 3u2r_A 122 PVRQCHERQLGHLAADELHELIRLMEL 148 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 455666677778999999999988874
Done!