Query 039262
Match_columns 885
No_of_seqs 539 out of 4236
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6E-102 1E-106 903.8 53.0 841 16-879 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.5E-63 7.6E-68 613.2 55.2 625 155-847 184-912 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1E-44 2.2E-49 385.8 16.9 280 160-442 1-284 (287)
4 KOG4194 Membrane glycoprotein 99.8 3.6E-22 7.9E-27 209.8 3.2 324 513-866 100-461 (873)
5 PLN00113 leucine-rich repeat r 99.8 2.4E-20 5.2E-25 232.5 18.3 304 513-839 116-439 (968)
6 KOG0444 Cytoskeletal regulator 99.8 1.1E-22 2.4E-27 214.6 -2.4 325 495-846 34-380 (1255)
7 KOG4194 Membrane glycoprotein 99.8 1.5E-21 3.3E-26 205.2 3.9 276 537-846 173-462 (873)
8 PLN03210 Resistant to P. syrin 99.8 1.5E-19 3.3E-24 225.0 22.3 313 498-843 594-945 (1153)
9 PLN00113 leucine-rich repeat r 99.8 7.9E-20 1.7E-24 227.9 19.5 309 513-848 138-472 (968)
10 KOG0444 Cytoskeletal regulator 99.8 9.6E-21 2.1E-25 200.2 -5.2 317 511-858 28-367 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 2.5E-19 5.4E-24 180.7 -4.1 307 510-839 201-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 5.8E-18 1.3E-22 171.0 -8.3 261 538-839 46-308 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.7E-14 3.7E-19 166.5 16.2 256 493-815 201-456 (788)
14 KOG4658 Apoptotic ATPase [Sign 99.5 4.7E-15 1E-19 175.1 7.4 324 498-849 528-868 (889)
15 KOG0617 Ras suppressor protein 99.5 1.8E-16 3.9E-21 141.7 -5.3 167 505-684 23-192 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 159.3 15.2 255 516-839 202-456 (788)
17 KOG0618 Serine/threonine phosp 99.5 2.7E-15 5.9E-20 167.3 -3.1 266 516-816 220-488 (1081)
18 PRK15370 E3 ubiquitin-protein 99.5 2.7E-13 5.8E-18 157.9 12.9 118 515-646 199-316 (754)
19 KOG0618 Serine/threonine phosp 99.4 6E-15 1.3E-19 164.6 -3.3 287 515-840 199-488 (1081)
20 PRK15370 E3 ubiquitin-protein 99.4 3.7E-13 7.9E-18 156.8 10.8 248 516-815 179-426 (754)
21 KOG0617 Ras suppressor protein 99.4 5.9E-15 1.3E-19 132.1 -4.6 141 527-679 23-164 (264)
22 PRK04841 transcriptional regul 99.4 2.6E-11 5.7E-16 150.8 23.8 291 154-487 13-332 (903)
23 KOG4237 Extracellular matrix p 99.4 3.1E-14 6.8E-19 144.2 -2.4 292 497-813 50-355 (498)
24 PRK00411 cdc6 cell division co 99.4 2.3E-10 5.1E-15 127.4 27.3 297 154-468 29-358 (394)
25 KOG4237 Extracellular matrix p 99.3 3.8E-14 8.3E-19 143.6 -4.7 280 526-838 57-356 (498)
26 TIGR02928 orc1/cdc6 family rep 99.2 8.2E-09 1.8E-13 113.8 29.0 296 155-468 15-350 (365)
27 TIGR03015 pepcterm_ATPase puta 99.2 3.5E-09 7.7E-14 111.3 23.6 182 174-363 41-242 (269)
28 PF01637 Arch_ATPase: Archaeal 99.2 1.8E-10 4E-15 118.5 12.4 196 157-358 1-233 (234)
29 COG2909 MalT ATP-dependent tra 99.1 4.8E-09 1E-13 118.0 20.2 291 155-487 19-338 (894)
30 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.9E-15 110.2 5.7 128 511-643 15-149 (175)
31 PRK00080 ruvB Holliday junctio 99.1 1.7E-09 3.7E-14 116.5 15.0 272 155-468 25-310 (328)
32 TIGR00635 ruvB Holliday juncti 99.1 8E-09 1.7E-13 110.7 19.6 272 156-468 5-289 (305)
33 PF14580 LRR_9: Leucine-rich r 99.0 3.4E-10 7.4E-15 107.4 4.7 139 524-672 6-147 (175)
34 PF05729 NACHT: NACHT domain 99.0 3.4E-09 7.4E-14 102.5 11.8 142 177-327 1-163 (166)
35 cd00116 LRR_RI Leucine-rich re 99.0 7.4E-11 1.6E-15 127.8 -0.4 34 749-783 220-260 (319)
36 cd00116 LRR_RI Leucine-rich re 98.9 2.1E-10 4.6E-15 124.2 1.7 93 712-813 217-316 (319)
37 COG3899 Predicted ATPase [Gene 98.9 2.4E-08 5.1E-13 119.4 17.6 307 157-485 2-384 (849)
38 PRK06893 DNA replication initi 98.8 2.4E-08 5.3E-13 101.2 11.6 153 175-360 38-204 (229)
39 PTZ00112 origin recognition co 98.8 5.9E-07 1.3E-11 102.3 22.9 208 154-363 754-986 (1164)
40 KOG0532 Leucine-rich repeat (L 98.8 2.3E-10 4.9E-15 121.9 -4.4 192 516-726 76-270 (722)
41 COG2256 MGS1 ATPase related to 98.8 7.1E-07 1.5E-11 92.6 19.4 210 167-406 39-265 (436)
42 PRK13342 recombination factor 98.7 1.2E-06 2.6E-11 97.5 20.9 175 155-360 12-197 (413)
43 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.5E-07 3.3E-12 96.0 12.7 168 160-360 22-202 (226)
44 KOG4341 F-box protein containi 98.7 1.1E-09 2.4E-14 112.8 -3.7 284 516-843 139-441 (483)
45 KOG4341 F-box protein containi 98.7 1.1E-09 2.5E-14 112.6 -3.6 281 537-860 138-436 (483)
46 KOG1259 Nischarin, modulator o 98.6 4.3E-09 9.3E-14 103.4 -0.6 126 514-645 283-410 (490)
47 KOG3207 Beta-tubulin folding c 98.6 7.1E-09 1.5E-13 107.5 0.9 208 534-782 118-335 (505)
48 PRK04195 replication factor C 98.6 2.3E-06 5E-11 97.1 20.6 241 155-442 14-271 (482)
49 KOG0532 Leucine-rich repeat (L 98.6 5E-09 1.1E-13 111.9 -0.9 126 515-646 121-246 (722)
50 PRK07003 DNA polymerase III su 98.6 2.6E-06 5.7E-11 96.8 19.4 195 155-361 16-223 (830)
51 KOG3207 Beta-tubulin folding c 98.6 1.3E-08 2.9E-13 105.5 1.0 157 513-680 119-286 (505)
52 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.5E-11 92.8 17.0 176 156-358 5-189 (313)
53 COG4886 Leucine-rich repeat (L 98.6 6.2E-08 1.3E-12 108.1 5.9 82 562-646 116-198 (394)
54 KOG1259 Nischarin, modulator o 98.6 2.2E-08 4.7E-13 98.5 1.7 106 561-679 283-388 (490)
55 PF13173 AAA_14: AAA domain 98.5 1.4E-07 3.1E-12 86.2 6.9 120 176-319 2-127 (128)
56 PRK08727 hypothetical protein; 98.5 9.7E-07 2.1E-11 89.8 13.3 167 157-356 22-201 (233)
57 TIGR02903 spore_lon_C ATP-depe 98.5 1.9E-05 4.1E-10 91.7 24.5 202 155-362 154-398 (615)
58 PF13855 LRR_8: Leucine rich r 98.5 1.1E-07 2.3E-12 74.1 4.0 58 538-597 2-60 (61)
59 PRK12402 replication factor C 98.5 2.3E-06 5.1E-11 93.3 15.8 193 155-357 15-224 (337)
60 KOG2028 ATPase related to the 98.5 3.4E-06 7.4E-11 85.7 15.0 173 157-355 140-332 (554)
61 cd00009 AAA The AAA+ (ATPases 98.5 1.4E-06 3E-11 82.2 11.5 124 158-298 1-131 (151)
62 PRK14949 DNA polymerase III su 98.5 2.8E-06 6.2E-11 98.5 15.8 181 155-359 16-220 (944)
63 PRK14960 DNA polymerase III su 98.4 1.2E-05 2.5E-10 90.7 19.4 190 155-357 15-217 (702)
64 PRK14961 DNA polymerase III su 98.4 7.3E-06 1.6E-10 89.4 17.5 189 155-356 16-217 (363)
65 COG4886 Leucine-rich repeat (L 98.4 2.7E-07 6E-12 102.9 6.6 101 516-619 117-219 (394)
66 COG1474 CDC6 Cdc6-related prot 98.4 2.5E-05 5.5E-10 84.1 20.1 201 155-359 17-238 (366)
67 PRK12323 DNA polymerase III su 98.4 5.2E-06 1.1E-10 93.2 15.2 197 155-358 16-224 (700)
68 PRK14963 DNA polymerase III su 98.4 7.8E-06 1.7E-10 92.0 16.8 194 155-362 14-221 (504)
69 PRK08084 DNA replication initi 98.4 4.1E-06 9E-11 85.3 13.0 171 156-359 24-209 (235)
70 PRK00440 rfc replication facto 98.4 9.6E-06 2.1E-10 87.7 16.5 178 155-356 17-200 (319)
71 PF05496 RuvB_N: Holliday junc 98.4 4.4E-06 9.6E-11 81.1 11.8 176 155-364 24-226 (233)
72 cd01128 rho_factor Transcripti 98.4 1.1E-06 2.3E-11 89.3 8.0 91 175-268 15-113 (249)
73 PRK09087 hypothetical protein; 98.3 8.1E-06 1.7E-10 82.2 14.2 139 175-358 43-194 (226)
74 PRK07471 DNA polymerase III su 98.3 1.9E-05 4.2E-10 85.2 17.9 195 155-359 19-238 (365)
75 PLN03025 replication factor C 98.3 7.8E-06 1.7E-10 87.7 14.6 180 155-356 13-197 (319)
76 PF13191 AAA_16: AAA ATPase do 98.3 1.3E-06 2.9E-11 86.0 7.7 45 156-200 1-48 (185)
77 PF13855 LRR_8: Leucine rich r 98.3 5.3E-07 1.1E-11 70.2 3.6 57 562-619 1-59 (61)
78 PF13401 AAA_22: AAA domain; P 98.3 1.4E-06 3.1E-11 80.3 6.8 117 175-296 3-125 (131)
79 PRK14962 DNA polymerase III su 98.3 2E-05 4.3E-10 88.0 17.0 186 155-363 14-223 (472)
80 PRK14957 DNA polymerase III su 98.3 1.6E-05 3.5E-10 89.6 16.3 184 155-362 16-224 (546)
81 PRK06645 DNA polymerase III su 98.3 2.6E-05 5.6E-10 87.4 17.8 193 155-356 21-226 (507)
82 KOG2120 SCF ubiquitin ligase, 98.3 2.2E-08 4.7E-13 98.7 -5.6 133 692-838 235-373 (419)
83 PLN03150 hypothetical protein; 98.3 2.1E-06 4.6E-11 100.4 9.0 104 538-644 419-525 (623)
84 PRK14956 DNA polymerase III su 98.3 1.2E-05 2.7E-10 88.0 14.2 189 155-356 18-219 (484)
85 PTZ00202 tuzin; Provisional 98.2 1.1E-05 2.5E-10 85.4 13.0 161 154-327 261-434 (550)
86 PRK13341 recombination factor 98.2 1.8E-05 4E-10 92.5 16.2 167 156-356 29-214 (725)
87 KOG1859 Leucine-rich repeat pr 98.2 8.1E-08 1.8E-12 105.5 -3.0 155 510-678 104-292 (1096)
88 PRK05642 DNA replication initi 98.2 1.3E-05 2.7E-10 81.6 12.6 152 176-360 45-209 (234)
89 KOG1909 Ran GTPase-activating 98.2 2.4E-07 5.2E-12 93.9 0.0 87 534-620 27-131 (382)
90 PRK07940 DNA polymerase III su 98.2 3.7E-05 8E-10 83.8 16.6 186 155-359 5-213 (394)
91 PRK07994 DNA polymerase III su 98.2 1.5E-05 3.3E-10 91.2 14.1 191 155-358 16-219 (647)
92 PRK14964 DNA polymerase III su 98.2 3.2E-05 7E-10 85.9 16.2 179 155-356 13-214 (491)
93 TIGR02397 dnaX_nterm DNA polym 98.2 5.7E-05 1.2E-09 83.0 18.1 182 155-360 14-219 (355)
94 PRK14958 DNA polymerase III su 98.2 2.3E-05 5E-10 88.5 15.0 179 155-356 16-217 (509)
95 TIGR01242 26Sp45 26S proteasom 98.2 1.4E-05 3E-10 87.6 12.8 171 155-353 122-328 (364)
96 PRK08691 DNA polymerase III su 98.2 1.8E-05 4E-10 90.1 13.8 178 155-356 16-217 (709)
97 TIGR00678 holB DNA polymerase 98.2 6.5E-05 1.4E-09 74.0 16.1 160 166-355 3-187 (188)
98 PRK09112 DNA polymerase III su 98.2 2.7E-05 5.8E-10 83.6 14.3 196 155-360 23-241 (351)
99 PRK14951 DNA polymerase III su 98.2 4.2E-05 9.1E-10 87.5 16.4 194 155-357 16-223 (618)
100 PRK05896 DNA polymerase III su 98.2 2.6E-05 5.7E-10 87.9 14.5 194 155-361 16-223 (605)
101 PRK09376 rho transcription ter 98.2 4.9E-06 1.1E-10 87.8 8.2 98 167-268 159-266 (416)
102 PRK08903 DnaA regulatory inact 98.2 1.8E-05 3.9E-10 80.6 12.1 170 157-363 21-203 (227)
103 PRK14955 DNA polymerase III su 98.1 3.2E-05 6.9E-10 85.5 13.4 196 155-356 16-225 (397)
104 PF00308 Bac_DnaA: Bacterial d 98.1 2.2E-05 4.7E-10 78.9 11.0 181 156-358 10-207 (219)
105 PRK14959 DNA polymerase III su 98.1 0.00016 3.5E-09 82.2 18.9 196 155-363 16-225 (624)
106 KOG1909 Ran GTPase-activating 98.1 4.5E-07 9.7E-12 91.9 -1.6 120 558-678 26-170 (382)
107 PRK14970 DNA polymerase III su 98.1 9.5E-05 2.1E-09 81.3 16.5 179 155-356 17-206 (367)
108 PRK14952 DNA polymerase III su 98.1 8.4E-05 1.8E-09 84.8 16.2 197 155-364 13-225 (584)
109 COG3903 Predicted ATPase [Gene 98.1 5.7E-06 1.2E-10 86.7 6.2 289 175-486 13-313 (414)
110 KOG0531 Protein phosphatase 1, 98.1 3.8E-07 8.2E-12 101.9 -2.6 82 533-619 91-172 (414)
111 PRK09111 DNA polymerase III su 98.1 7.4E-05 1.6E-09 85.7 15.7 194 155-358 24-232 (598)
112 PRK14969 DNA polymerase III su 98.1 6E-05 1.3E-09 85.8 14.9 183 155-360 16-222 (527)
113 PF12799 LRR_4: Leucine Rich r 98.1 4.7E-06 1E-10 59.2 3.8 39 563-602 2-40 (44)
114 PRK07764 DNA polymerase III su 98.0 9.2E-05 2E-09 87.9 16.5 195 155-362 15-225 (824)
115 TIGR00767 rho transcription te 98.0 1.4E-05 3.1E-10 85.0 8.5 92 175-268 167-265 (415)
116 PLN03150 hypothetical protein; 98.0 1.3E-05 2.8E-10 93.9 8.9 105 563-675 419-525 (623)
117 KOG2120 SCF ubiquitin ligase, 98.0 2.6E-07 5.6E-12 91.2 -4.4 82 563-645 186-271 (419)
118 TIGR02880 cbbX_cfxQ probable R 98.0 0.00019 4.1E-09 75.3 15.4 154 156-329 23-210 (284)
119 PRK03992 proteasome-activating 98.0 7E-05 1.5E-09 82.3 12.7 171 155-353 131-337 (389)
120 PRK14087 dnaA chromosomal repl 97.9 6.1E-05 1.3E-09 84.1 12.0 166 177-360 142-320 (450)
121 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 57.3 3.9 41 586-627 1-41 (44)
122 PRK08451 DNA polymerase III su 97.9 0.00027 5.9E-09 79.4 17.0 182 155-359 14-218 (535)
123 PRK11331 5-methylcytosine-spec 97.9 7.6E-05 1.6E-09 80.9 12.0 69 155-226 175-243 (459)
124 PRK07133 DNA polymerase III su 97.9 0.00023 5.1E-09 82.2 16.6 188 155-360 18-221 (725)
125 PRK14954 DNA polymerase III su 97.9 0.00022 4.8E-09 82.0 16.5 200 155-360 16-230 (620)
126 PRK14971 DNA polymerase III su 97.9 0.00023 4.9E-09 82.4 16.7 178 155-356 17-219 (614)
127 KOG2982 Uncharacterized conser 97.9 4.3E-06 9.3E-11 82.8 2.1 56 560-619 69-131 (418)
128 TIGR02881 spore_V_K stage V sp 97.9 0.00013 2.9E-09 75.8 13.2 154 156-329 7-193 (261)
129 PRK14953 DNA polymerase III su 97.9 0.00032 6.8E-09 78.9 17.0 177 155-359 16-220 (486)
130 PRK14950 DNA polymerase III su 97.9 0.00034 7.4E-09 81.2 17.8 193 155-359 16-221 (585)
131 PRK06305 DNA polymerase III su 97.9 0.00036 7.9E-09 77.9 17.2 182 155-360 17-224 (451)
132 COG2255 RuvB Holliday junction 97.9 0.00087 1.9E-08 66.8 17.4 170 155-359 26-223 (332)
133 PRK15386 type III secretion pr 97.9 5.1E-05 1.1E-09 81.3 9.6 62 535-603 50-112 (426)
134 PRK15386 type III secretion pr 97.9 3.1E-05 6.8E-10 82.9 7.9 82 514-606 51-135 (426)
135 CHL00181 cbbX CbbX; Provisiona 97.9 0.00028 6E-09 73.9 14.9 154 156-329 24-211 (287)
136 PRK14948 DNA polymerase III su 97.9 0.00041 8.8E-09 80.3 17.3 194 155-359 16-222 (620)
137 PF05621 TniB: Bacterial TniB 97.8 0.00081 1.8E-08 68.9 16.8 198 156-356 35-258 (302)
138 PF14516 AAA_35: AAA-like doma 97.8 0.0014 3E-08 70.5 19.7 200 154-365 10-245 (331)
139 KOG4579 Leucine-rich repeat (L 97.8 2.8E-06 6.1E-11 74.4 -0.8 109 517-628 29-141 (177)
140 KOG0531 Protein phosphatase 1, 97.8 3.2E-06 6.9E-11 94.5 -0.8 126 512-645 92-219 (414)
141 PRK06620 hypothetical protein; 97.8 0.00013 2.8E-09 72.9 10.7 133 177-356 45-186 (214)
142 TIGR00362 DnaA chromosomal rep 97.8 0.0003 6.6E-09 78.3 14.8 158 177-356 137-307 (405)
143 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00033 7.2E-09 84.4 15.8 180 155-353 187-390 (852)
144 KOG2543 Origin recognition com 97.8 0.00015 3.3E-09 74.9 10.9 163 154-326 5-192 (438)
145 KOG0989 Replication factor C, 97.8 0.0003 6.6E-09 70.7 12.4 181 155-353 36-224 (346)
146 PRK14088 dnaA chromosomal repl 97.8 0.00018 3.9E-09 80.3 11.9 159 176-356 130-302 (440)
147 PRK06647 DNA polymerase III su 97.8 0.00088 1.9E-08 76.7 17.6 189 155-356 16-217 (563)
148 PRK12422 chromosomal replicati 97.8 0.00051 1.1E-08 76.4 15.3 152 177-352 142-306 (445)
149 PTZ00361 26 proteosome regulat 97.7 0.00021 4.6E-09 78.6 11.8 171 156-353 184-389 (438)
150 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.9E-10 92.2 3.2 131 515-647 122-263 (699)
151 PTZ00454 26S protease regulato 97.7 0.00074 1.6E-08 73.9 15.3 172 155-353 145-351 (398)
152 PRK00149 dnaA chromosomal repl 97.7 0.00031 6.6E-09 79.3 12.4 159 176-356 148-319 (450)
153 KOG2227 Pre-initiation complex 97.7 0.0024 5.2E-08 68.2 17.9 204 154-362 149-375 (529)
154 KOG2982 Uncharacterized conser 97.7 2.1E-05 4.6E-10 78.0 2.6 107 563-677 46-158 (418)
155 PRK14965 DNA polymerase III su 97.7 0.00064 1.4E-08 78.5 14.8 195 155-362 16-224 (576)
156 PRK07399 DNA polymerase III su 97.7 0.0015 3.2E-08 69.3 16.4 195 156-359 5-221 (314)
157 PRK05563 DNA polymerase III su 97.7 0.0014 3.1E-08 75.3 17.3 189 155-356 16-217 (559)
158 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.7E-10 89.8 4.1 79 538-618 123-204 (699)
159 PHA02544 44 clamp loader, smal 97.6 0.00033 7.3E-09 75.4 11.3 145 155-325 21-171 (316)
160 PRK14086 dnaA chromosomal repl 97.6 0.0012 2.6E-08 74.9 15.8 158 177-356 315-485 (617)
161 TIGR02639 ClpA ATP-dependent C 97.6 0.00048 1E-08 82.4 13.1 154 156-327 183-358 (731)
162 PRK05707 DNA polymerase III su 97.6 0.0021 4.6E-08 68.5 16.5 94 258-359 106-203 (328)
163 COG1373 Predicted ATPase (AAA+ 97.6 0.0011 2.4E-08 73.0 14.2 165 159-358 21-191 (398)
164 PF05673 DUF815: Protein of un 97.5 0.0051 1.1E-07 61.1 16.5 46 155-200 27-76 (249)
165 KOG1644 U2-associated snRNP A' 97.5 0.00012 2.6E-09 69.0 4.6 85 558-644 60-150 (233)
166 COG1222 RPT1 ATP-dependent 26S 97.5 0.0017 3.8E-08 66.9 13.2 196 156-379 152-392 (406)
167 PRK08116 hypothetical protein; 97.4 0.00021 4.6E-09 74.0 6.4 103 177-297 115-221 (268)
168 TIGR03689 pup_AAA proteasome A 97.4 0.00086 1.9E-08 75.0 11.5 161 156-328 183-379 (512)
169 TIGR01241 FtsH_fam ATP-depende 97.4 0.0018 3.8E-08 74.1 14.4 172 155-353 55-260 (495)
170 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0015 3.3E-08 71.6 12.7 170 156-352 191-395 (802)
171 CHL00095 clpC Clp protease ATP 97.4 0.00067 1.5E-08 82.2 11.4 154 156-326 180-353 (821)
172 PRK10865 protein disaggregatio 97.4 0.0012 2.5E-08 80.1 13.1 45 156-200 179-223 (857)
173 KOG1859 Leucine-rich repeat pr 97.4 8.5E-06 1.8E-10 90.1 -4.6 126 563-702 165-290 (1096)
174 TIGR00763 lon ATP-dependent pr 97.4 0.011 2.4E-07 71.4 20.7 46 155-200 320-371 (775)
175 PRK08769 DNA polymerase III su 97.4 0.0077 1.7E-07 63.7 16.8 174 161-360 10-209 (319)
176 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0012 2.5E-08 80.4 12.1 155 156-327 174-349 (852)
177 PRK11034 clpA ATP-dependent Cl 97.3 0.00092 2E-08 79.0 10.6 155 156-327 187-362 (758)
178 PRK08058 DNA polymerase III su 97.3 0.0058 1.3E-07 65.7 15.9 161 156-326 6-181 (329)
179 COG0593 DnaA ATPase involved i 97.3 0.0017 3.7E-08 70.0 11.6 139 175-335 112-265 (408)
180 COG3267 ExeA Type II secretory 97.3 0.014 2.9E-07 57.9 16.6 184 173-361 48-247 (269)
181 PRK08118 topology modulation p 97.3 0.00017 3.6E-09 69.1 3.2 36 177-212 2-37 (167)
182 PRK06835 DNA replication prote 97.3 0.0046 1E-07 65.8 14.3 37 176-215 183-219 (329)
183 CHL00176 ftsH cell division pr 97.2 0.0034 7.3E-08 72.9 13.8 171 155-352 183-387 (638)
184 KOG2123 Uncharacterized conser 97.2 3E-05 6.5E-10 76.3 -2.6 103 535-642 17-125 (388)
185 KOG1644 U2-associated snRNP A' 97.2 0.0005 1.1E-08 64.9 5.0 81 563-646 43-125 (233)
186 PRK10536 hypothetical protein; 97.2 0.0023 5.1E-08 64.3 9.8 54 156-212 56-109 (262)
187 PF13177 DNA_pol3_delta2: DNA 97.1 0.0047 1E-07 58.8 11.4 137 159-315 1-162 (162)
188 COG0466 Lon ATP-dependent Lon 97.1 0.038 8.3E-07 62.6 19.7 155 155-327 323-508 (782)
189 smart00382 AAA ATPases associa 97.1 0.0013 2.7E-08 61.2 7.4 88 176-270 2-90 (148)
190 KOG1947 Leucine rich repeat pr 97.1 7E-05 1.5E-09 86.2 -1.5 110 536-645 187-306 (482)
191 PF04665 Pox_A32: Poxvirus A32 97.1 0.0013 2.9E-08 65.7 7.7 36 177-215 14-49 (241)
192 TIGR00602 rad24 checkpoint pro 97.1 0.002 4.3E-08 74.2 9.9 46 155-200 84-134 (637)
193 PRK12377 putative replication 97.1 0.0012 2.5E-08 67.2 7.1 74 175-268 100-173 (248)
194 PRK06871 DNA polymerase III su 97.1 0.026 5.6E-07 59.9 17.3 176 163-356 10-200 (325)
195 PRK06090 DNA polymerase III su 97.1 0.025 5.5E-07 59.8 17.1 176 162-359 10-201 (319)
196 PRK12608 transcription termina 97.1 0.0032 6.9E-08 67.0 10.4 103 164-268 120-230 (380)
197 PRK10787 DNA-binding ATP-depen 97.1 0.023 5E-07 68.0 18.5 47 154-200 321-373 (784)
198 KOG4579 Leucine-rich repeat (L 97.0 0.00014 3E-09 64.0 -0.2 87 516-605 54-142 (177)
199 PF00004 AAA: ATPase family as 97.0 0.0015 3.2E-08 60.0 6.6 22 179-200 1-22 (132)
200 TIGR01243 CDC48 AAA family ATP 97.0 0.006 1.3E-07 73.4 13.3 173 156-355 179-383 (733)
201 PRK07261 topology modulation p 97.0 0.0027 5.8E-08 61.2 8.3 67 178-269 2-68 (171)
202 KOG0741 AAA+-type ATPase [Post 97.0 0.024 5.3E-07 61.4 15.5 145 175-349 537-704 (744)
203 COG2812 DnaX DNA polymerase II 97.0 0.0038 8.2E-08 69.4 10.0 187 155-354 16-215 (515)
204 PF10443 RNA12: RNA12 protein; 96.9 0.053 1.2E-06 58.4 17.8 199 160-370 1-289 (431)
205 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.2E-09 68.4 1.9 86 558-644 61-153 (260)
206 KOG2228 Origin recognition com 96.8 0.012 2.5E-07 60.4 11.4 170 155-327 24-219 (408)
207 TIGR01243 CDC48 AAA family ATP 96.8 0.022 4.7E-07 68.6 15.7 171 156-353 454-657 (733)
208 PRK07993 DNA polymerase III su 96.8 0.044 9.6E-07 58.7 16.2 177 163-357 10-202 (334)
209 PRK06921 hypothetical protein; 96.8 0.0013 2.7E-08 68.1 4.4 39 175-215 116-154 (266)
210 PRK07952 DNA replication prote 96.8 0.0056 1.2E-07 62.1 8.9 88 163-269 84-173 (244)
211 PRK06964 DNA polymerase III su 96.8 0.062 1.3E-06 57.5 17.0 92 257-360 131-226 (342)
212 COG1223 Predicted ATPase (AAA+ 96.8 0.043 9.4E-07 54.1 14.2 171 155-353 121-319 (368)
213 KOG0991 Replication factor C, 96.8 0.004 8.6E-08 60.1 7.0 65 155-220 27-91 (333)
214 CHL00195 ycf46 Ycf46; Provisio 96.7 0.014 2.9E-07 65.7 12.5 173 155-353 228-429 (489)
215 PRK08181 transposase; Validate 96.7 0.0016 3.4E-08 67.2 4.6 72 176-268 106-177 (269)
216 smart00763 AAA_PrkA PrkA AAA d 96.7 0.0022 4.9E-08 67.8 5.4 45 156-200 52-102 (361)
217 KOG1514 Origin recognition com 96.7 0.072 1.6E-06 60.2 16.9 194 156-359 397-621 (767)
218 COG0542 clpA ATP-binding subun 96.6 0.051 1.1E-06 63.4 16.2 103 156-269 492-604 (786)
219 TIGR02639 ClpA ATP-dependent C 96.6 0.014 3.1E-07 69.9 12.4 46 155-200 454-508 (731)
220 KOG0730 AAA+-type ATPase [Post 96.6 0.025 5.3E-07 63.4 12.9 164 156-342 435-630 (693)
221 PF00448 SRP54: SRP54-type pro 96.6 0.0061 1.3E-07 59.9 7.4 89 176-267 1-92 (196)
222 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4E-08 58.4 3.6 23 178-200 1-23 (121)
223 PF07693 KAP_NTPase: KAP famil 96.6 0.075 1.6E-06 57.5 16.6 41 160-200 1-44 (325)
224 KOG1947 Leucine rich repeat pr 96.5 0.00052 1.1E-08 79.0 -0.4 115 558-677 184-307 (482)
225 COG5238 RNA1 Ran GTPase-activa 96.5 0.00088 1.9E-08 66.0 1.1 83 536-619 29-130 (388)
226 PRK09183 transposase/IS protei 96.5 0.0026 5.6E-08 65.7 4.6 26 175-200 101-126 (259)
227 PRK04296 thymidine kinase; Pro 96.5 0.003 6.5E-08 62.0 4.9 113 177-298 3-117 (190)
228 PRK06526 transposase; Provisio 96.5 0.0029 6.2E-08 64.9 4.8 26 175-200 97-122 (254)
229 cd01133 F1-ATPase_beta F1 ATP 96.5 0.011 2.3E-07 60.6 8.7 91 175-268 68-173 (274)
230 TIGR02640 gas_vesic_GvpN gas v 96.5 0.063 1.4E-06 55.8 14.6 55 162-224 9-63 (262)
231 KOG2739 Leucine-rich acidic nu 96.5 0.0018 4E-08 64.0 2.7 104 514-619 42-153 (260)
232 PRK09361 radB DNA repair and r 96.4 0.012 2.6E-07 59.7 8.9 46 175-224 22-67 (225)
233 PRK04132 replication factor C 96.4 0.055 1.2E-06 64.4 14.9 151 184-357 574-729 (846)
234 PF01695 IstB_IS21: IstB-like 96.4 0.0026 5.7E-08 61.5 3.3 73 175-268 46-118 (178)
235 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.015 3.3E-07 59.4 9.2 57 175-233 18-78 (235)
236 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.015 3.3E-07 54.4 8.0 116 177-298 3-139 (159)
237 PRK06696 uridine kinase; Valid 96.3 0.0057 1.2E-07 61.9 5.7 42 159-200 2-46 (223)
238 TIGR02237 recomb_radB DNA repa 96.3 0.018 3.9E-07 57.7 9.3 48 175-226 11-58 (209)
239 COG0470 HolB ATPase involved i 96.3 0.026 5.7E-07 61.0 11.3 139 156-313 2-167 (325)
240 cd01393 recA_like RecA is a b 96.3 0.034 7.3E-07 56.5 11.4 92 175-268 18-124 (226)
241 PF08423 Rad51: Rad51; InterP 96.3 0.021 4.6E-07 58.8 9.8 58 175-234 37-98 (256)
242 PF07728 AAA_5: AAA domain (dy 96.3 0.0054 1.2E-07 56.9 4.9 42 179-226 2-43 (139)
243 TIGR02012 tigrfam_recA protein 96.3 0.011 2.3E-07 62.3 7.4 86 175-268 54-143 (321)
244 cd03238 ABC_UvrA The excision 96.3 0.016 3.4E-07 55.8 8.0 125 175-311 20-161 (176)
245 cd00983 recA RecA is a bacter 96.2 0.011 2.4E-07 62.3 7.3 85 175-267 54-142 (325)
246 TIGR03345 VI_ClpV1 type VI sec 96.2 0.011 2.3E-07 71.6 8.1 46 155-200 566-620 (852)
247 PRK10865 protein disaggregatio 96.2 0.041 8.9E-07 66.9 13.1 46 155-200 568-622 (857)
248 PF13604 AAA_30: AAA domain; P 96.2 0.015 3.2E-07 57.4 7.7 36 165-200 7-42 (196)
249 cd01131 PilT Pilus retraction 96.2 0.0074 1.6E-07 59.7 5.5 110 177-300 2-112 (198)
250 PRK09354 recA recombinase A; P 96.2 0.013 2.8E-07 62.2 7.5 86 175-268 59-148 (349)
251 TIGR03346 chaperone_ClpB ATP-d 96.2 0.021 4.6E-07 69.6 10.2 46 155-200 565-619 (852)
252 KOG0731 AAA+-type ATPase conta 96.2 0.068 1.5E-06 61.9 13.5 174 156-356 312-521 (774)
253 cd01394 radB RadB. The archaea 96.1 0.037 8.1E-07 55.8 10.5 43 175-220 18-60 (218)
254 COG0572 Udk Uridine kinase [Nu 96.1 0.014 3.1E-07 57.0 6.8 79 175-259 7-85 (218)
255 PRK05541 adenylylsulfate kinas 96.1 0.014 3E-07 56.7 6.9 36 175-213 6-41 (176)
256 PRK15455 PrkA family serine pr 96.1 0.0068 1.5E-07 67.6 5.1 45 156-200 77-127 (644)
257 PRK08699 DNA polymerase III su 96.1 0.11 2.5E-06 55.4 14.2 85 259-355 114-202 (325)
258 PRK06762 hypothetical protein; 96.1 0.043 9.4E-07 52.6 10.2 25 176-200 2-26 (166)
259 CHL00095 clpC Clp protease ATP 96.1 0.016 3.4E-07 70.5 8.7 46 155-200 509-563 (821)
260 TIGR02238 recomb_DMC1 meiotic 96.0 0.039 8.5E-07 58.5 10.3 60 175-235 95-157 (313)
261 KOG0733 Nuclear AAA ATPase (VC 96.0 0.097 2.1E-06 58.1 13.2 172 157-353 513-718 (802)
262 KOG0736 Peroxisome assembly fa 96.0 0.16 3.5E-06 58.0 15.2 170 155-351 672-877 (953)
263 KOG0728 26S proteasome regulat 96.0 0.053 1.2E-06 53.0 10.0 166 157-346 148-350 (404)
264 cd03247 ABCC_cytochrome_bd The 96.0 0.027 5.8E-07 54.8 8.3 127 175-311 27-169 (178)
265 cd01120 RecA-like_NTPases RecA 96.0 0.035 7.7E-07 52.9 9.1 40 178-220 1-40 (165)
266 PF00560 LRR_1: Leucine Rich R 95.9 0.0032 6.9E-08 37.1 0.9 18 588-605 2-19 (22)
267 COG2607 Predicted ATPase (AAA+ 95.9 0.034 7.3E-07 54.4 8.2 46 155-200 60-109 (287)
268 PRK06547 hypothetical protein; 95.9 0.012 2.5E-07 56.5 5.1 35 166-200 5-39 (172)
269 PRK08939 primosomal protein Dn 95.9 0.027 5.9E-07 59.5 8.3 117 159-296 135-260 (306)
270 KOG2004 Mitochondrial ATP-depe 95.9 0.1 2.2E-06 59.0 12.9 63 156-224 412-480 (906)
271 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.038 8.3E-07 51.4 8.5 104 175-301 25-131 (144)
272 KOG0652 26S proteasome regulat 95.8 0.19 4.2E-06 49.5 13.1 53 148-200 162-229 (424)
273 cd03216 ABC_Carb_Monos_I This 95.8 0.016 3.4E-07 55.4 5.7 116 175-300 25-145 (163)
274 PF06309 Torsin: Torsin; Inte 95.8 0.05 1.1E-06 48.2 8.0 45 156-200 26-77 (127)
275 PF14532 Sigma54_activ_2: Sigm 95.8 0.013 2.7E-07 54.3 4.7 43 158-200 1-45 (138)
276 COG1484 DnaC DNA replication p 95.8 0.044 9.6E-07 56.3 9.0 90 159-268 87-177 (254)
277 PRK10733 hflB ATP-dependent me 95.7 0.1 2.2E-06 61.6 13.1 170 156-352 153-356 (644)
278 COG4608 AppF ABC-type oligopep 95.7 0.041 8.9E-07 55.5 8.3 127 175-305 38-178 (268)
279 cd03214 ABC_Iron-Siderophores_ 95.7 0.037 8.1E-07 53.9 8.0 122 175-300 24-161 (180)
280 PLN03187 meiotic recombination 95.7 0.044 9.5E-07 58.6 9.0 60 175-235 125-187 (344)
281 KOG2035 Replication factor C, 95.7 0.28 6.2E-06 49.2 13.8 209 156-382 14-261 (351)
282 COG1618 Predicted nucleotide k 95.7 0.013 2.8E-07 53.6 4.2 34 177-212 6-39 (179)
283 PF00485 PRK: Phosphoribulokin 95.7 0.087 1.9E-06 52.0 10.6 82 178-262 1-87 (194)
284 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.07 1.5E-06 54.6 10.2 48 175-227 20-67 (237)
285 PRK00771 signal recognition pa 95.7 0.075 1.6E-06 58.8 11.0 58 175-235 94-152 (437)
286 KOG0744 AAA+-type ATPase [Post 95.7 0.034 7.4E-07 56.7 7.4 81 176-269 177-261 (423)
287 cd03246 ABCC_Protease_Secretio 95.7 0.028 6.1E-07 54.3 6.8 127 175-311 27-168 (173)
288 cd03228 ABCC_MRP_Like The MRP 95.6 0.044 9.5E-07 52.9 8.1 126 175-311 27-167 (171)
289 cd03230 ABC_DR_subfamily_A Thi 95.6 0.034 7.4E-07 53.7 7.3 120 175-301 25-159 (173)
290 cd01121 Sms Sms (bacterial rad 95.6 0.061 1.3E-06 58.4 9.9 86 175-267 81-167 (372)
291 KOG0734 AAA+-type ATPase conta 95.6 0.029 6.2E-07 61.0 7.0 45 156-200 305-361 (752)
292 cd03222 ABC_RNaseL_inhibitor T 95.6 0.032 7E-07 53.7 6.9 27 174-200 23-49 (177)
293 COG2884 FtsE Predicted ATPase 95.6 0.073 1.6E-06 50.3 8.7 125 175-304 27-204 (223)
294 COG1102 Cmk Cytidylate kinase 95.6 0.036 7.7E-07 50.8 6.5 45 178-236 2-46 (179)
295 PF00154 RecA: recA bacterial 95.6 0.18 4E-06 53.1 12.8 87 175-269 52-142 (322)
296 PRK11034 clpA ATP-dependent Cl 95.6 0.023 5E-07 67.4 6.9 46 155-200 458-512 (758)
297 PRK05800 cobU adenosylcobinami 95.6 0.009 2E-07 57.2 2.9 83 177-267 2-85 (170)
298 PRK14722 flhF flagellar biosyn 95.5 0.057 1.2E-06 58.2 9.2 89 175-268 136-225 (374)
299 COG1136 SalX ABC-type antimicr 95.5 0.058 1.2E-06 53.5 8.5 126 175-304 30-210 (226)
300 TIGR02239 recomb_RAD51 DNA rep 95.5 0.07 1.5E-06 56.8 9.8 60 175-235 95-157 (316)
301 PRK13539 cytochrome c biogenes 95.5 0.042 9.2E-07 54.9 7.7 26 175-200 27-52 (207)
302 COG5238 RNA1 Ran GTPase-activa 95.5 0.016 3.5E-07 57.4 4.4 86 560-646 28-132 (388)
303 cd03223 ABCD_peroxisomal_ALDP 95.5 0.056 1.2E-06 51.8 8.2 125 175-311 26-160 (166)
304 KOG0735 AAA+-type ATPase [Post 95.5 0.033 7.1E-07 62.7 7.3 72 176-268 431-504 (952)
305 PRK06067 flagellar accessory p 95.5 0.087 1.9E-06 53.8 10.1 88 175-268 24-130 (234)
306 PRK04301 radA DNA repair and r 95.5 0.11 2.3E-06 55.7 11.1 58 175-234 101-162 (317)
307 PRK10867 signal recognition pa 95.5 0.099 2.1E-06 57.8 10.9 26 175-200 99-124 (433)
308 cd03115 SRP The signal recogni 95.5 0.05 1.1E-06 52.6 7.8 23 178-200 2-24 (173)
309 PRK09270 nucleoside triphospha 95.5 0.019 4.2E-07 58.3 5.1 27 174-200 31-57 (229)
310 PRK10463 hydrogenase nickel in 95.4 0.058 1.3E-06 55.7 8.4 35 166-200 94-128 (290)
311 PTZ00301 uridine kinase; Provi 95.4 0.025 5.5E-07 56.1 5.6 25 176-200 3-27 (210)
312 PHA00729 NTP-binding motif con 95.4 0.021 4.6E-07 56.5 4.8 35 166-200 7-41 (226)
313 PRK07667 uridine kinase; Provi 95.4 0.023 5E-07 56.0 5.1 37 164-200 3-41 (193)
314 PRK13531 regulatory ATPase Rav 95.3 0.027 5.8E-07 62.2 6.0 44 155-200 20-63 (498)
315 PF13238 AAA_18: AAA domain; P 95.3 0.014 3E-07 53.2 3.3 22 179-200 1-22 (129)
316 cd03229 ABC_Class3 This class 95.3 0.036 7.8E-07 53.9 6.3 26 175-200 25-50 (178)
317 PRK04328 hypothetical protein; 95.3 0.084 1.8E-06 54.3 9.1 42 175-219 22-63 (249)
318 PF00560 LRR_1: Leucine Rich R 95.3 0.0089 1.9E-07 35.2 1.1 21 563-584 1-21 (22)
319 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.035 7.5E-07 52.7 5.9 117 175-302 24-145 (157)
320 PRK11889 flhF flagellar biosyn 95.3 0.15 3.3E-06 54.7 11.0 87 175-267 240-329 (436)
321 PF13306 LRR_5: Leucine rich r 95.3 0.049 1.1E-06 49.6 6.7 101 534-642 9-111 (129)
322 COG0541 Ffh Signal recognition 95.3 0.92 2E-05 49.0 16.7 57 175-235 99-157 (451)
323 KOG1969 DNA replication checkp 95.2 0.04 8.7E-07 62.3 7.0 72 175-269 325-398 (877)
324 TIGR03499 FlhF flagellar biosy 95.2 0.075 1.6E-06 55.7 8.8 87 175-266 193-280 (282)
325 PRK07132 DNA polymerase III su 95.2 0.86 1.9E-05 47.9 16.5 167 164-358 5-184 (299)
326 PRK12727 flagellar biosynthesi 95.2 0.12 2.7E-06 57.7 10.6 88 175-267 349-437 (559)
327 cd02019 NK Nucleoside/nucleoti 95.2 0.016 3.6E-07 46.0 3.0 23 178-200 1-23 (69)
328 PLN00020 ribulose bisphosphate 95.2 0.044 9.6E-07 57.9 6.8 27 174-200 146-172 (413)
329 TIGR00390 hslU ATP-dependent p 95.2 0.043 9.3E-07 59.3 6.9 46 155-200 12-71 (441)
330 PRK08233 hypothetical protein; 95.2 0.017 3.6E-07 56.5 3.6 25 176-200 3-27 (182)
331 PRK08972 fliI flagellum-specif 95.2 0.06 1.3E-06 58.9 8.0 89 175-268 161-262 (444)
332 TIGR00959 ffh signal recogniti 95.2 0.079 1.7E-06 58.5 9.0 26 175-200 98-123 (428)
333 COG0464 SpoVK ATPases of the A 95.1 0.29 6.3E-06 56.2 14.0 152 156-330 243-426 (494)
334 PRK12678 transcription termina 95.1 0.046 1E-06 60.9 6.8 91 175-267 415-512 (672)
335 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.16 3.5E-06 51.6 10.6 41 175-218 19-59 (229)
336 cd03217 ABC_FeS_Assembly ABC-t 95.1 0.055 1.2E-06 53.7 7.0 25 175-199 25-49 (200)
337 PF12775 AAA_7: P-loop contain 95.1 0.032 7E-07 57.9 5.3 88 165-268 23-110 (272)
338 PRK05480 uridine/cytidine kina 95.1 0.02 4.4E-07 57.3 3.7 26 175-200 5-30 (209)
339 TIGR00708 cobA cob(I)alamin ad 95.0 0.12 2.5E-06 49.1 8.4 117 176-297 5-140 (173)
340 COG0563 Adk Adenylate kinase a 95.0 0.035 7.6E-07 53.5 5.1 23 178-200 2-24 (178)
341 PF13481 AAA_25: AAA domain; P 95.0 0.09 1.9E-06 51.9 8.2 43 176-218 32-81 (193)
342 cd01135 V_A-ATPase_B V/A-type 95.0 0.13 2.7E-06 52.7 9.2 95 175-269 68-177 (276)
343 PF13671 AAA_33: AAA domain; P 95.0 0.022 4.7E-07 53.1 3.5 23 178-200 1-23 (143)
344 PF13306 LRR_5: Leucine rich r 95.0 0.068 1.5E-06 48.6 6.7 112 516-636 13-128 (129)
345 PLN03186 DNA repair protein RA 94.9 0.18 3.8E-06 54.1 10.6 60 175-235 122-184 (342)
346 TIGR02858 spore_III_AA stage I 94.9 0.15 3.3E-06 52.7 9.7 128 165-301 99-233 (270)
347 PRK05986 cob(I)alamin adenolsy 94.9 0.11 2.3E-06 50.1 8.0 118 175-297 21-158 (191)
348 TIGR00554 panK_bact pantothena 94.9 0.16 3.5E-06 52.9 9.9 27 174-200 60-86 (290)
349 cd01124 KaiC KaiC is a circadi 94.9 0.097 2.1E-06 51.3 8.0 45 178-227 1-45 (187)
350 KOG2123 Uncharacterized conser 94.9 0.0049 1.1E-07 61.1 -1.2 68 504-572 30-98 (388)
351 PRK13765 ATP-dependent proteas 94.8 0.052 1.1E-06 63.0 6.7 75 155-234 31-105 (637)
352 TIGR00064 ftsY signal recognit 94.8 0.14 3E-06 53.2 9.3 89 175-267 71-163 (272)
353 TIGR02236 recomb_radA DNA repa 94.8 0.14 3.1E-06 54.7 9.8 59 175-234 94-155 (310)
354 PRK03839 putative kinase; Prov 94.8 0.024 5.3E-07 55.2 3.5 23 178-200 2-24 (180)
355 PRK13543 cytochrome c biogenes 94.8 0.11 2.3E-06 52.3 8.2 26 175-200 36-61 (214)
356 COG0468 RecA RecA/RadA recombi 94.8 0.12 2.6E-06 53.2 8.6 88 175-267 59-150 (279)
357 PRK05201 hslU ATP-dependent pr 94.8 0.07 1.5E-06 57.7 7.1 79 154-232 14-107 (443)
358 TIGR00150 HI0065_YjeE ATPase, 94.8 0.056 1.2E-06 48.9 5.4 39 162-200 6-46 (133)
359 PTZ00088 adenylate kinase 1; P 94.8 0.03 6.5E-07 56.4 4.1 23 178-200 8-30 (229)
360 PF00006 ATP-synt_ab: ATP synt 94.8 0.16 3.5E-06 50.5 9.2 88 175-267 14-114 (215)
361 PRK12597 F0F1 ATP synthase sub 94.8 0.093 2E-06 58.2 8.1 92 175-268 142-247 (461)
362 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.14 3E-06 53.0 9.1 40 175-217 35-74 (259)
363 KOG0737 AAA+-type ATPase [Post 94.7 0.48 1E-05 49.8 12.6 50 156-208 93-156 (386)
364 TIGR00235 udk uridine kinase. 94.7 0.026 5.6E-07 56.4 3.5 26 175-200 5-30 (207)
365 PF06745 KaiC: KaiC; InterPro 94.7 0.045 9.8E-07 55.6 5.2 88 175-268 18-125 (226)
366 PRK11823 DNA repair protein Ra 94.7 0.13 2.8E-06 57.6 9.2 54 175-234 79-132 (446)
367 PRK12726 flagellar biosynthesi 94.7 0.33 7.1E-06 52.1 11.6 88 175-267 205-294 (407)
368 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.19 4E-06 50.8 9.3 123 175-300 29-202 (254)
369 KOG0735 AAA+-type ATPase [Post 94.7 0.85 1.9E-05 51.9 15.1 173 156-355 668-872 (952)
370 PTZ00035 Rad51 protein; Provis 94.7 0.31 6.8E-06 52.3 11.7 59 175-235 117-179 (337)
371 PF00910 RNA_helicase: RNA hel 94.6 0.025 5.4E-07 49.6 2.7 22 179-200 1-22 (107)
372 TIGR01425 SRP54_euk signal rec 94.6 0.12 2.7E-06 56.6 8.6 26 175-200 99-124 (429)
373 cd03369 ABCC_NFT1 Domain 2 of 94.6 0.2 4.3E-06 50.1 9.6 26 175-200 33-58 (207)
374 PRK14974 cell division protein 94.6 0.27 5.8E-06 52.5 10.9 57 175-235 139-197 (336)
375 PF07726 AAA_3: ATPase family 94.6 0.023 5E-07 50.4 2.3 28 179-209 2-29 (131)
376 COG1428 Deoxynucleoside kinase 94.6 0.031 6.8E-07 53.9 3.4 49 176-230 4-52 (216)
377 PRK09519 recA DNA recombinatio 94.6 0.097 2.1E-06 61.6 8.1 86 175-268 59-148 (790)
378 PF01583 APS_kinase: Adenylyls 94.6 0.042 9.1E-07 51.2 4.2 36 176-214 2-37 (156)
379 TIGR01360 aden_kin_iso1 adenyl 94.6 0.032 7E-07 54.8 3.7 26 175-200 2-27 (188)
380 cd03215 ABC_Carb_Monos_II This 94.5 0.079 1.7E-06 51.7 6.3 26 175-200 25-50 (182)
381 PRK09280 F0F1 ATP synthase sub 94.5 0.14 2.9E-06 56.7 8.6 92 175-268 143-248 (463)
382 PRK00625 shikimate kinase; Pro 94.5 0.031 6.7E-07 53.7 3.2 23 178-200 2-24 (173)
383 PRK06851 hypothetical protein; 94.5 0.36 7.9E-06 51.9 11.6 57 157-219 199-255 (367)
384 PRK06217 hypothetical protein; 94.5 0.058 1.3E-06 52.7 5.3 23 178-200 3-25 (183)
385 PRK12723 flagellar biosynthesi 94.5 0.19 4.1E-06 54.8 9.5 89 175-267 173-263 (388)
386 TIGR03575 selen_PSTK_euk L-ser 94.5 0.12 2.5E-06 55.2 7.8 22 179-200 2-23 (340)
387 PRK06002 fliI flagellum-specif 94.5 0.12 2.7E-06 56.7 8.2 90 175-268 164-264 (450)
388 PF08298 AAA_PrkA: PrkA AAA do 94.4 0.058 1.3E-06 56.7 5.2 46 155-200 61-112 (358)
389 PRK04040 adenylate kinase; Pro 94.4 0.037 8.1E-07 54.0 3.6 24 177-200 3-26 (188)
390 cd03213 ABCG_EPDR ABCG transpo 94.3 0.11 2.4E-06 51.2 7.0 26 175-200 34-59 (194)
391 PRK08927 fliI flagellum-specif 94.3 0.18 3.8E-06 55.5 9.0 89 175-268 157-258 (442)
392 PRK08533 flagellar accessory p 94.3 0.23 4.9E-06 50.4 9.3 49 175-228 23-71 (230)
393 KOG2170 ATPase of the AAA+ sup 94.3 0.065 1.4E-06 54.3 5.1 45 156-200 83-134 (344)
394 TIGR03305 alt_F1F0_F1_bet alte 94.3 0.13 2.8E-06 56.7 7.9 92 175-268 137-242 (449)
395 PRK12724 flagellar biosynthesi 94.3 0.15 3.2E-06 55.6 8.1 25 176-200 223-247 (432)
396 TIGR03498 FliI_clade3 flagella 94.3 0.13 2.8E-06 56.5 7.8 89 175-268 139-240 (418)
397 PRK08149 ATP synthase SpaL; Va 94.3 0.19 4.1E-06 55.2 9.0 89 175-268 150-251 (428)
398 KOG1532 GTPase XAB1, interacts 94.2 0.05 1.1E-06 54.1 4.1 61 175-236 18-87 (366)
399 PRK14721 flhF flagellar biosyn 94.2 0.27 5.9E-06 54.0 10.2 60 175-235 190-250 (420)
400 cd01129 PulE-GspE PulE/GspE Th 94.2 0.16 3.4E-06 52.7 8.0 105 158-275 62-166 (264)
401 TIGR00416 sms DNA repair prote 94.2 0.23 5.1E-06 55.7 9.9 40 175-217 93-132 (454)
402 PF00625 Guanylate_kin: Guanyl 94.2 0.068 1.5E-06 52.2 5.0 36 176-214 2-37 (183)
403 COG1066 Sms Predicted ATP-depe 94.2 0.33 7.1E-06 51.8 10.1 95 166-268 81-178 (456)
404 COG1419 FlhF Flagellar GTP-bin 94.2 0.43 9.4E-06 51.3 11.2 60 175-235 202-262 (407)
405 PRK05922 type III secretion sy 94.2 0.17 3.7E-06 55.6 8.5 89 175-268 156-257 (434)
406 PTZ00185 ATPase alpha subunit; 94.1 0.24 5.1E-06 54.9 9.3 94 175-269 188-300 (574)
407 COG1124 DppF ABC-type dipeptid 94.1 0.06 1.3E-06 53.1 4.3 26 175-200 32-57 (252)
408 PRK05703 flhF flagellar biosyn 94.1 0.29 6.3E-06 54.4 10.3 87 176-267 221-308 (424)
409 TIGR01359 UMP_CMP_kin_fam UMP- 94.1 0.036 7.9E-07 54.2 2.9 23 178-200 1-23 (183)
410 PRK14527 adenylate kinase; Pro 94.1 0.072 1.6E-06 52.4 5.0 26 175-200 5-30 (191)
411 PRK06936 type III secretion sy 94.1 0.18 3.8E-06 55.5 8.4 89 175-268 161-262 (439)
412 PF13504 LRR_7: Leucine rich r 94.1 0.03 6.6E-07 30.5 1.3 16 587-602 2-17 (17)
413 TIGR00764 lon_rel lon-related 94.1 0.16 3.5E-06 59.2 8.6 75 155-234 18-92 (608)
414 PRK05973 replicative DNA helic 94.1 0.3 6.6E-06 49.2 9.4 49 175-228 63-111 (237)
415 cd02024 NRK1 Nicotinamide ribo 94.1 0.038 8.2E-07 53.6 2.9 23 178-200 1-23 (187)
416 PRK00131 aroK shikimate kinase 94.1 0.05 1.1E-06 52.7 3.8 25 176-200 4-28 (175)
417 cd02023 UMPK Uridine monophosp 94.1 0.036 7.8E-07 55.0 2.8 23 178-200 1-23 (198)
418 cd01125 repA Hexameric Replica 94.0 0.29 6.3E-06 50.1 9.6 23 178-200 3-25 (239)
419 PF02562 PhoH: PhoH-like prote 94.0 0.055 1.2E-06 53.0 3.9 53 159-214 4-56 (205)
420 TIGR01039 atpD ATP synthase, F 94.0 0.21 4.5E-06 55.1 8.7 92 175-268 142-247 (461)
421 COG4618 ArpD ABC-type protease 94.0 0.22 4.7E-06 54.4 8.6 26 175-200 361-386 (580)
422 TIGR02030 BchI-ChlI magnesium 94.0 0.086 1.9E-06 56.4 5.6 45 156-200 5-49 (337)
423 KOG0727 26S proteasome regulat 94.0 0.087 1.9E-06 51.6 5.1 45 156-200 156-213 (408)
424 COG0542 clpA ATP-binding subun 94.0 0.064 1.4E-06 62.6 4.9 151 156-327 171-346 (786)
425 cd02028 UMPK_like Uridine mono 94.0 0.051 1.1E-06 52.7 3.6 23 178-200 1-23 (179)
426 PF03205 MobB: Molybdopterin g 94.0 0.077 1.7E-06 49.0 4.6 39 177-217 1-39 (140)
427 cd02025 PanK Pantothenate kina 94.0 0.039 8.4E-07 55.5 2.8 23 178-200 1-23 (220)
428 PF10236 DAP3: Mitochondrial r 93.9 2 4.4E-05 45.6 15.8 49 308-356 258-306 (309)
429 cd01136 ATPase_flagellum-secre 93.9 0.28 6E-06 52.0 9.1 89 175-268 68-169 (326)
430 TIGR02322 phosphon_PhnN phosph 93.9 0.051 1.1E-06 52.9 3.5 24 177-200 2-25 (179)
431 KOG3864 Uncharacterized conser 93.8 0.01 2.3E-07 56.4 -1.4 64 749-818 124-190 (221)
432 PRK05439 pantothenate kinase; 93.8 0.41 8.8E-06 50.4 10.1 26 175-200 85-110 (311)
433 COG3598 RepA RecA-family ATPas 93.8 0.19 4.2E-06 51.4 7.3 60 178-237 91-158 (402)
434 KOG0729 26S proteasome regulat 93.8 0.34 7.3E-06 48.0 8.8 45 156-200 178-235 (435)
435 CHL00081 chlI Mg-protoporyphyr 93.8 0.079 1.7E-06 56.7 4.9 46 155-200 17-62 (350)
436 PRK10751 molybdopterin-guanine 93.8 0.061 1.3E-06 51.2 3.7 26 175-200 5-30 (173)
437 COG3640 CooC CO dehydrogenase 93.8 0.11 2.4E-06 50.9 5.4 41 178-220 2-42 (255)
438 PRK13407 bchI magnesium chelat 93.8 0.082 1.8E-06 56.4 5.0 46 155-200 8-53 (334)
439 COG0467 RAD55 RecA-superfamily 93.8 0.076 1.6E-06 55.2 4.7 54 175-234 22-75 (260)
440 KOG3864 Uncharacterized conser 93.8 0.0066 1.4E-07 57.7 -2.8 71 711-789 120-192 (221)
441 COG4088 Predicted nucleotide k 93.7 0.054 1.2E-06 51.7 3.1 24 177-200 2-25 (261)
442 COG1703 ArgK Putative periplas 93.7 0.1 2.3E-06 53.1 5.3 60 165-225 38-99 (323)
443 KOG0743 AAA+-type ATPase [Post 93.7 1.6 3.5E-05 47.3 14.4 148 177-363 236-413 (457)
444 TIGR01420 pilT_fam pilus retra 93.7 0.11 2.4E-06 56.2 6.0 113 174-299 120-232 (343)
445 TIGR01040 V-ATPase_V1_B V-type 93.7 0.25 5.5E-06 54.2 8.6 93 175-268 140-257 (466)
446 PF00158 Sigma54_activat: Sigm 93.7 0.093 2E-06 50.1 4.8 44 157-200 1-46 (168)
447 cd02020 CMPK Cytidine monophos 93.7 0.051 1.1E-06 50.8 3.0 23 178-200 1-23 (147)
448 PF05970 PIF1: PIF1-like helic 93.6 0.15 3.3E-06 55.8 6.9 38 163-200 9-46 (364)
449 cd03250 ABCC_MRP_domain1 Domai 93.6 0.28 6.1E-06 48.8 8.4 26 175-200 30-55 (204)
450 PRK13947 shikimate kinase; Pro 93.6 0.056 1.2E-06 52.1 3.2 23 178-200 3-25 (171)
451 PRK06995 flhF flagellar biosyn 93.6 0.27 5.9E-06 54.9 8.9 59 176-235 256-315 (484)
452 cd00227 CPT Chloramphenicol (C 93.6 0.067 1.4E-06 51.8 3.7 25 176-200 2-26 (175)
453 PRK13949 shikimate kinase; Pro 93.6 0.059 1.3E-06 51.7 3.2 23 178-200 3-25 (169)
454 PRK10875 recD exonuclease V su 93.6 0.15 3.2E-06 59.2 7.0 55 176-230 167-221 (615)
455 cd02021 GntK Gluconate kinase 93.6 0.053 1.1E-06 51.0 2.9 23 178-200 1-23 (150)
456 KOG3347 Predicted nucleotide k 93.5 0.12 2.5E-06 46.7 4.7 35 176-218 7-41 (176)
457 cd00071 GMPK Guanosine monopho 93.5 0.061 1.3E-06 49.5 3.2 23 178-200 1-23 (137)
458 PF03308 ArgK: ArgK protein; 93.5 0.12 2.7E-06 51.8 5.4 61 163-224 14-76 (266)
459 COG0396 sufC Cysteine desulfur 93.5 0.33 7.1E-06 47.6 8.1 64 248-311 152-218 (251)
460 COG0465 HflB ATP-dependent Zn 93.5 0.7 1.5E-05 52.7 11.9 174 155-355 150-357 (596)
461 TIGR02655 circ_KaiC circadian 93.5 0.43 9.2E-06 54.4 10.5 96 166-267 251-362 (484)
462 PRK00889 adenylylsulfate kinas 93.4 0.074 1.6E-06 51.5 3.7 25 176-200 4-28 (175)
463 PF13245 AAA_19: Part of AAA d 93.4 0.15 3.3E-06 41.2 4.9 26 175-200 9-35 (76)
464 PRK05688 fliI flagellum-specif 93.4 0.24 5.2E-06 54.7 7.9 89 175-268 167-268 (451)
465 PF03193 DUF258: Protein of un 93.4 0.11 2.5E-06 48.6 4.6 35 163-200 25-59 (161)
466 PRK15453 phosphoribulokinase; 93.4 0.37 8E-06 49.5 8.6 26 175-200 4-29 (290)
467 PRK00279 adk adenylate kinase; 93.4 0.11 2.4E-06 52.3 5.0 23 178-200 2-24 (215)
468 PRK09099 type III secretion sy 93.4 0.3 6.5E-06 54.0 8.6 90 175-268 162-263 (441)
469 PF08433 KTI12: Chromatin asso 93.3 0.075 1.6E-06 55.0 3.7 24 177-200 2-25 (270)
470 COG0003 ArsA Predicted ATPase 93.3 0.13 2.8E-06 54.4 5.5 48 176-226 2-49 (322)
471 cd01132 F1_ATPase_alpha F1 ATP 93.3 0.3 6.5E-06 50.0 7.9 89 175-268 68-171 (274)
472 PRK05057 aroK shikimate kinase 93.3 0.08 1.7E-06 51.0 3.7 25 176-200 4-28 (172)
473 PF13086 AAA_11: AAA domain; P 93.3 0.17 3.6E-06 51.6 6.4 53 178-230 19-75 (236)
474 PRK14530 adenylate kinase; Pro 93.3 0.073 1.6E-06 53.5 3.5 24 177-200 4-27 (215)
475 TIGR01069 mutS2 MutS2 family p 93.3 0.055 1.2E-06 64.7 3.0 114 257-381 401-522 (771)
476 PRK15429 formate hydrogenlyase 93.2 0.21 4.6E-06 59.8 7.9 45 156-200 377-423 (686)
477 cd03281 ABC_MSH5_euk MutS5 hom 93.2 0.066 1.4E-06 53.6 3.0 23 176-198 29-51 (213)
478 PRK10416 signal recognition pa 93.2 0.83 1.8E-05 48.6 11.5 26 175-200 113-138 (318)
479 TIGR03263 guanyl_kin guanylate 93.2 0.069 1.5E-06 52.0 3.1 24 177-200 2-25 (180)
480 PF08477 Miro: Miro-like prote 93.2 0.075 1.6E-06 47.5 3.1 22 179-200 2-23 (119)
481 cd00464 SK Shikimate kinase (S 93.2 0.074 1.6E-06 50.2 3.2 22 179-200 2-23 (154)
482 COG1936 Predicted nucleotide k 93.2 0.07 1.5E-06 49.7 2.9 20 178-197 2-21 (180)
483 TIGR00073 hypB hydrogenase acc 93.1 0.096 2.1E-06 52.3 4.1 32 169-200 15-46 (207)
484 TIGR02868 CydC thiol reductant 93.1 0.28 6E-06 57.1 8.5 27 174-200 359-385 (529)
485 PRK07594 type III secretion sy 93.1 0.31 6.7E-06 53.7 8.2 90 174-268 153-255 (433)
486 PRK07276 DNA polymerase III su 93.1 3.4 7.3E-05 43.2 15.4 66 257-324 103-172 (290)
487 cd00820 PEPCK_HprK Phosphoenol 93.1 0.081 1.8E-06 45.7 2.9 23 175-197 14-36 (107)
488 COG0194 Gmk Guanylate kinase [ 93.1 0.11 2.4E-06 49.1 4.1 25 176-200 4-28 (191)
489 TIGR01041 ATP_syn_B_arch ATP s 93.1 0.37 8E-06 53.6 8.7 93 175-268 140-248 (458)
490 PRK10078 ribose 1,5-bisphospho 93.0 0.076 1.6E-06 52.0 3.1 24 177-200 3-26 (186)
491 TIGR02902 spore_lonB ATP-depen 93.0 0.13 2.8E-06 59.2 5.4 45 156-200 66-110 (531)
492 PRK00300 gmk guanylate kinase; 93.0 0.08 1.7E-06 52.8 3.4 26 175-200 4-29 (205)
493 cd01122 GP4d_helicase GP4d_hel 93.0 0.6 1.3E-05 48.9 10.1 53 175-231 29-81 (271)
494 PRK13948 shikimate kinase; Pro 93.0 0.099 2.2E-06 50.6 3.8 26 175-200 9-34 (182)
495 PF03266 NTPase_1: NTPase; In 93.0 0.082 1.8E-06 50.5 3.2 22 179-200 2-23 (168)
496 KOG1051 Chaperone HSP104 and r 93.0 0.65 1.4E-05 55.3 11.1 100 156-269 563-671 (898)
497 PRK12339 2-phosphoglycerate ki 93.0 0.095 2E-06 51.5 3.7 25 176-200 3-27 (197)
498 PRK13545 tagH teichoic acids e 92.9 0.55 1.2E-05 52.9 9.9 26 175-200 49-74 (549)
499 PRK13946 shikimate kinase; Pro 92.9 0.094 2E-06 51.2 3.6 25 176-200 10-34 (184)
500 COG1116 TauB ABC-type nitrate/ 92.9 0.083 1.8E-06 52.6 3.2 26 175-200 28-53 (248)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.3e-102 Score=903.79 Aligned_cols=841 Identities=41% Similarity=0.708 Sum_probs=707.2
Q ss_pred hhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCch
Q 039262 16 FNRCLDCFLGKAAYIRNLQQNVEALGTELGTLIAKKNDLMSRVVNAEQQQMRRLDHVQVWLSRVDAVKADADELIRDGPQ 95 (885)
Q Consensus 16 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~Wl~~~~~~~~~~ed~ld~~~~ 95 (885)
++++.+++.++...+.++++.+..+++++..|++++.|+ ++++. +...+..|.+.+++++|++||+++.|..
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~-------~a~~~-~~~~~~~~~e~~~~~~~~~e~~~~~~~v 80 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDL-------DAKRD-DLERRVNWEEDVGDLVYLAEDIIWLFLV 80 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-------Hhhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999999999999999999994 44443 3466789999999999999999998765
Q ss_pred hhh----------------cccccCCcCCCccccchHHHHHHHHHHHHHHHHccCCceeecc-cCCCCCcccCCCCCcc-
Q 039262 96 EIE----------------KLCLGGYCSKNCHSSYEFGKQVAKKLSDVKTLMGEGVFEVVAE-EKPEPAVDERPTDATV- 157 (885)
Q Consensus 96 ~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~- 157 (885)
+.. +.|..+++.......+.+++++...+++++.+..++.+..+.. ..+......+|..+..
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 81 EEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred HHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 432 2233456666777778889999999999999887776766654 2232333444443333
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 158 VGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
||.+..++++++.|.+++.++++|+||||+||||||++++|+...+..+||.++||+||+.++...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999998889999999999999999999999994489999999999999999999999999999998766
Q ss_pred cccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhh-ccCcceEEeccCCh
Q 039262 238 TWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL-MEAHKKFKVECLSH 316 (885)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~~ 316 (885)
.+.....++.+..+.+.|++|||+|||||||+..+|+.++.++| ...+||+|++|||+..||.. +++...++++.|++
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC-CccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 66666668899999999999999999999999999999999999 67889999999999999998 78888999999999
Q ss_pred hhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhcc-CCCCCCCCcchhh
Q 039262 317 NDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRTS-SSQFPGLGNEVYP 395 (885)
Q Consensus 317 ~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~-~~~~~~~~~~~~~ 395 (885)
+|||.||++.++......++.++++|++++++|+|+|||++++|+.|+.+++.++|+++.+.+.+. ..+.+++.+.+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 999999999999886666677999999999999999999999999999999999999999999887 5556677789999
Q ss_pred hHHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccC-cchhhHHHHHHHHHHHHHHcccccccc----C
Q 039262 396 LLKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNE-SVNFGVQKEGYHIVGTLVHACLLEEVE----E 470 (885)
Q Consensus 396 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~-~~~~~~~~~~~~~l~~L~~~sll~~~~----~ 470 (885)
+|.+||+.||+ ++|.||+|||+||+||.|+++.|+.+|+||||+.+ .....++++|+.|+++|++++|++... .
T Consensus 400 iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 99999999996 99999999999999999999999999999999998 667889999999999999999999863 4
Q ss_pred CeEEehHHHHHHHHHHHhhcccccccEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCcc-
Q 039262 471 DEVQMHDVIRDMALWLACDVEKEKEDYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQ- 549 (885)
Q Consensus 471 ~~~~mHdlv~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~- 549 (885)
.+|+|||+||++|.++|++.+++++++++..+.+..+.|....|..+|++++++|.+..++....+++|++|.+.+|..
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 7899999999999999999999888888888777777888899999999999999999998888999999999999953
Q ss_pred ccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchh
Q 039262 550 LLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRL 629 (885)
Q Consensus 550 l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~ 629 (885)
+..++..||..|+.|++|||++|..+.++|++|+.|.|||||+|++|.|+.||.++++|.+|.+|++..+..+..+| ++
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP-GI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc-ch
Confidence 77888899999999999999999899999999999999999999999999999999999999999999997777665 55
Q ss_pred hcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccc
Q 039262 630 ISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDV 709 (885)
Q Consensus 630 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 709 (885)
...|++|++|.+....... +...+.++..|++|+.+.+.......+..+....++.+..+.+.+.++...+. .
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~-----~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~--~ 710 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSN-----DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL--I 710 (889)
T ss_pred hhhcccccEEEeecccccc-----chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee--e
Confidence 6779999999998765222 23467788888899888886555433344444444555555665544222221 2
Q ss_pred cccccCCCcceEeecccCccceEEecccccccCCCccc-ccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccc
Q 039262 710 SALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPF-VFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQE 788 (885)
Q Consensus 710 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~ 788 (885)
.++..+.+|++|.|.+|...+. ...+..... .. .|+++.++.+.+|.....+.|....|+|+.|.+..|..+++
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e~-~~~~~~~~~----~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISEI-VIEWEESLI----VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED 785 (889)
T ss_pred cccccccCcceEEEEcCCCchh-hcccccccc----hhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence 3677889999999999976542 223332100 11 27789999999999999999988999999999999999998
Q ss_pred ccccccccc---ccCccCCcccee-ecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCCCCcccc---ceEEEech
Q 039262 789 IVSDVPEVM---RNLNLFAKLQYL-GLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLDSNSAKE---RKIVIRGY 861 (885)
Q Consensus 789 i~~~~~~~~---~~~~~~p~L~~L-~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~~~~---~l~~i~~~ 861 (885)
+.+...... .....|.++..+ .+.+.+.+..+.+....+|+|+.+.+..||++..+|........ .......+
T Consensus 786 ~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 786 IIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred CCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCC
Confidence 876432111 124567777777 57788888888877788999999999999999999998665422 23344455
Q ss_pred hhhhccCcccccchhhhc
Q 039262 862 GEWWEQLQWENQATQNAF 879 (885)
Q Consensus 862 ~~~~~~l~w~~~~~~~~~ 879 (885)
.+|.+.+.|+++..+..+
T Consensus 866 ~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 866 GEWLEGVYWEDELTKLRF 883 (889)
T ss_pred ccceeeEEehhhhhhhhc
Confidence 678899999999988765
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.5e-63 Score=613.17 Aligned_cols=625 Identities=22% Similarity=0.329 Sum_probs=437.4
Q ss_pred CcccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE---cCc-----------
Q 039262 155 ATVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV---SKD----------- 218 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~----------- 218 (885)
+.+|||+..++++..+|.- ++.++|+||||||+||||||+++|+.. ..+|+..+|+.. +..
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccccc
Confidence 4689999999999998853 578999999999999999999999987 678998888742 111
Q ss_pred cC-HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCCh
Q 039262 219 LR-LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 219 ~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (885)
+. ...+++.++.++....+ .... ....+++.++++|+||||||||+...|+.+..... +.++||+||||||+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~----~~~~-~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~-~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKD----IKIY-HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQ-WFGSGSRIIVITKDK 334 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCC----cccC-CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCc-cCCCCcEEEEEeCcH
Confidence 01 12344444444322110 0111 12457788999999999999999999988876555 678899999999999
Q ss_pred hHhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHH
Q 039262 298 EVCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQ 377 (885)
Q Consensus 298 ~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~ 377 (885)
.++..++..+.|+++.|++++||+||+++||... ..++++.+++++|+++|+|+|||++++|+.|++ ++..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9998777788999999999999999999998765 334568899999999999999999999999997 57899999999
Q ss_pred HHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHH
Q 039262 378 VLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVG 457 (885)
Q Consensus 378 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~ 457 (885)
.++... +..+..+|++||++|+++..|.||+++|+|+.+..++ .+..|++.+.... +..++
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------~~~l~ 473 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------NIGLK 473 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------hhChH
Confidence 987642 2479999999999998745899999999999887553 4777888764432 22388
Q ss_pred HHHHccccccccCCeEEehHHHHHHHHHHHhhccc--ccccEEEEc---------CCc-------------cCCC----C
Q 039262 458 TLVHACLLEEVEEDEVQMHDVIRDMALWLACDVEK--EKEDYLVYA---------GAR-------------LSEA----P 509 (885)
Q Consensus 458 ~L~~~sll~~~~~~~~~mHdlv~d~a~~~~~~~~~--~~~~~~~~~---------~~~-------------~~~~----~ 509 (885)
.|+++||++.. .+.+.|||++|++|+.++.++.. .++.++... +.+ ..+. .
T Consensus 474 ~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~ 552 (1153)
T PLN03210 474 NLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHEN 552 (1153)
T ss_pred HHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHH
Confidence 99999999875 46799999999999999876421 112222110 000 0000 0
Q ss_pred Cccccc-------------------------------ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhh
Q 039262 510 DVRKWE-------------------------------KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFF 558 (885)
Q Consensus 510 ~~~~~~-------------------------------~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~ 558 (885)
....+. ++|.|.+.++.+..+|......+|+.|++.+| .+..++.+ +
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~~L~~~-~ 630 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLEKLWDG-V 630 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-cccccccc-c
Confidence 011122 35555555555555555445677777777777 56666655 5
Q ss_pred cCCCcccEEEecCCCccccCchhHhccccCCEeecCCC-CccccchhhhccCCCcEEecCCccccccccchhhcCCCCCc
Q 039262 559 QCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDT-NVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLH 637 (885)
Q Consensus 559 ~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 637 (885)
..+++|++|+|+++..+..+| .++.+++|++|+|++| .+..+|..+++|++|++|++++|..++.+|.+ + ++++|+
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~ 707 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLY 707 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCC
Confidence 677888888888775677777 4777888888888876 56778888888888888888888777888864 2 678888
Q ss_pred EEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhcc---------------------------cccc
Q 039262 638 VLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSS---------------------------HRLR 690 (885)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~---------------------------~~~~ 690 (885)
+|++.+|..... +.. ...+|+.|++..+.+..++..... ....
T Consensus 708 ~L~Lsgc~~L~~--------~p~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~ 777 (1153)
T PLN03210 708 RLNLSGCSRLKS--------FPD--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLS 777 (1153)
T ss_pred EEeCCCCCCccc--------ccc--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhcc
Confidence 888877643221 000 123555566655554333321100 0012
Q ss_pred ccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccC
Q 039262 691 SCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLA 770 (885)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~ 770 (885)
++|+.|.+.+++....++. .+.++++|+.|++++|..++.++... .+++|++|++++|..+..+|.+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-----------~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-----------NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred ccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-----------CccccCEEECCCCCcccccccc-
Confidence 3455555555544444432 34555666666666665555432211 2556666666666555555432
Q ss_pred CCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCC
Q 039262 771 FAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLD 847 (885)
Q Consensus 771 ~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~ 847 (885)
.++|+.|+|+++ .++.+|. .+..+++|+.|+|.+|++++.++.....+++|+.+++.+|++|+.++..
T Consensus 845 -~~nL~~L~Ls~n-~i~~iP~-------si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~ 912 (1153)
T PLN03210 845 -STNISDLNLSRT-GIEEVPW-------WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN 912 (1153)
T ss_pred -ccccCEeECCCC-CCccChH-------HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC
Confidence 345666666553 4554443 5678999999999999999999888888999999999999999877653
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-44 Score=385.79 Aligned_cols=280 Identities=34% Similarity=0.637 Sum_probs=230.7
Q ss_pred hHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 160 LQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 160 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
||.++++|.+.|.+ ++.++|+|+||||+||||||++++++. .++.+|+.++|+.++...+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 79999999999998 789999999999999999999999995 358999999999999999999999999999987644
Q ss_pred cc-cccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhhccC-cceEEeccCC
Q 039262 238 TW-KNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEA-HKKFKVECLS 315 (885)
Q Consensus 238 ~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~ 315 (885)
.. ...+..+....+.+.|.++++||||||||+...|+.+...++ ....|++||||||+..++..+.. ...|++++|+
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred ccccccccccccccchhhhccccceeeeeeecccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence 33 455677789999999999999999999999999999888887 66779999999999999877655 6789999999
Q ss_pred hhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhccCCCCCCCCcchhh
Q 039262 316 HNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRTSSSQFPGLGNEVYP 395 (885)
Q Consensus 316 ~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 395 (885)
.+||++||.+.++......++.+.+++++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999976542334555678999999999999999999999976567889999998888765444444568999
Q ss_pred hHHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccC
Q 039262 396 LLKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNE 442 (885)
Q Consensus 396 ~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 442 (885)
++.+||+.||+ ++|.||+|||+||+++.|+++.++++|+++|+|+.
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999999 89999999999999999999999999999999986
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.6e-22 Score=209.80 Aligned_cols=324 Identities=16% Similarity=0.199 Sum_probs=178.8
Q ss_pred cccceeEEEeecCCcccCCCCCCC-CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCE
Q 039262 513 KWEKVRRLSLMENQIDNLSGVPTC-PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQH 590 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~ 590 (885)
++++++.+++..|.+..+|.+... .+|+.|+|.+| .+.++....++.++.||+||||.| .|.++|. ++..-.++++
T Consensus 100 nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 100 NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred cCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 345666666666666666665433 34666666666 555555555666666666666666 6666553 2334456666
Q ss_pred eecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 591 LDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 591 L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
|+|++|.|+.+. ..+.+|.+|-+|.|+.| .++.+|...+++|++|+.|++..|.+.-. ..-.++.|++|+.
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv-------e~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV-------EGLTFQGLPSLQN 249 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee-------hhhhhcCchhhhh
Confidence 666666666665 34666666666666666 45666665566666666666666544221 1122445555555
Q ss_pred EEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCccccc
Q 039262 670 LSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVF 749 (885)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (885)
|.+..|++..+..-.+. .+.+++.|.|..+ .+..+...++-+++.|+.|++++|..-..-...|. ..
T Consensus 250 lklqrN~I~kL~DG~Fy--~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws----------ft 316 (873)
T KOG4194|consen 250 LKLQRNDISKLDDGAFY--GLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS----------FT 316 (873)
T ss_pred hhhhhcCcccccCccee--eecccceeecccc-hhhhhhcccccccchhhhhccchhhhheeecchhh----------hc
Confidence 55555554443332221 1234555555442 23333333455555555555555532221122332 24
Q ss_pred CcccEEEeccCCCCCCCC--------------------------ccCCCCCcceEeEeccccccccccccccccccCccC
Q 039262 750 HSLRKIQIDDCNKLKDLT--------------------------FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLF 803 (885)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~--------------------------~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~ 803 (885)
++|+.|+|++ +.++.++ .+..+.+|++|+|+++. +.-... +....+.++
T Consensus 317 qkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IE---Daa~~f~gl 391 (873)
T KOG4194|consen 317 QKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIE---DAAVAFNGL 391 (873)
T ss_pred ccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEe---cchhhhccc
Confidence 4555555544 3344433 23345566666665532 222211 223467889
Q ss_pred CccceeecCCcccccccCCC-CCCCCCcceEEEccCCCCCCCCCCCCcc--------ccceEEEechhhhhc
Q 039262 804 AKLQYLGLSSLSNFQSIYWK-PLPFPHLKEMKVIHCNKLKKLPLDSNSA--------KERKIVIRGYGEWWE 866 (885)
Q Consensus 804 p~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~i~~c~~L~~lp~~~~~~--------~~~l~~i~~~~~~~~ 866 (885)
|+|+.|.|.+ +++++|+.. ...++.|++|++.+++ +.++....+.. ...-...+|.-.|..
T Consensus 392 ~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl~ 461 (873)
T KOG4194|consen 392 PSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWLA 461 (873)
T ss_pred hhhhheeecC-ceeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHHH
Confidence 9999999998 678888753 4568999999997774 66555443322 111234577777764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2.4e-20 Score=232.48 Aligned_cols=304 Identities=21% Similarity=0.185 Sum_probs=175.8
Q ss_pred cccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 513 KWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
.++++++|++++|.+........+++|++|++++|.....+|.. ++.+++|++|+|++|.....+|..++++++|++|+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 44567777777766654323345667777777777322234433 67777777777777733346777777777777777
Q ss_pred cCCCCcc-ccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEE
Q 039262 593 LSDTNVA-VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLS 671 (885)
Q Consensus 593 L~~~~i~-~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (885)
|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|.+... .+..++.+++|+.|+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGP-------IPSSLGNLKNLQYLF 266 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccc-------cChhHhCCCCCCEEE
Confidence 7777653 56777777777777777777544456654 67777777777776655431 344566777777777
Q ss_pred EEecccch-hhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccC
Q 039262 672 LTLNNSRA-LHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFH 750 (885)
Q Consensus 672 l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (885)
++.|.... ++... ....+|+.|.+.++.-...++ ..+..+++|+.|++++|.....+ +.... .++
T Consensus 267 L~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~---------~l~ 332 (968)
T PLN00113 267 LYQNKLSGPIPPSI---FSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKI-PVALT---------SLP 332 (968)
T ss_pred CcCCeeeccCchhH---hhccCcCEEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcC-ChhHh---------cCC
Confidence 77665432 11111 112466677776654222222 23556677777777766443322 22222 366
Q ss_pred cccEEEeccCCCCCCCC-ccCCCCCcceEeEeccccccccccccc-----------------cccccCccCCccceeecC
Q 039262 751 SLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDVP-----------------EVMRNLNLFAKLQYLGLS 812 (885)
Q Consensus 751 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~-----------------~~~~~~~~~p~L~~L~L~ 812 (885)
+|+.|++++|.-...+| .++.+++|+.|++++|.....++.... .....+..+++|+.|++.
T Consensus 333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~ 412 (968)
T PLN00113 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412 (968)
T ss_pred CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECc
Confidence 77777777654333444 356667777777766543222222100 001134456677777776
Q ss_pred CcccccccCCCCCCCCCcceEEEccCC
Q 039262 813 SLSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 813 ~~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
+|.-...++.....+|+|+.|++++|.
T Consensus 413 ~n~l~~~~p~~~~~l~~L~~L~Ls~N~ 439 (968)
T PLN00113 413 DNSFSGELPSEFTKLPLVYFLDISNNN 439 (968)
T ss_pred CCEeeeECChhHhcCCCCCEEECcCCc
Confidence 655444444445557777777777663
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=1.1e-22 Score=214.63 Aligned_cols=325 Identities=22% Similarity=0.301 Sum_probs=222.1
Q ss_pred ccEEEEcCCccCCCCC-cccccceeEEEeecCCcccCCC-CCCCCCceeeeccCCc-cccccCchhhcCCCcccEEEecC
Q 039262 495 EDYLVYAGARLSEAPD-VRKWEKVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNK-QLLIMDRGFFQCMPRLKVLNLSG 571 (885)
Q Consensus 495 ~~~~~~~~~~~~~~~~-~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~-~l~~~~~~~~~~l~~Lr~L~Ls~ 571 (885)
-.|+..+...+..+|. ...+.++.||++..|++..+.+ ++.++.||++++..|. .-..+|+.+| +|+-|.+||||+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecch
Confidence 3577777666666653 3556789999999998877643 6889999999999883 2345788855 689999999999
Q ss_pred CCccccCchhHhccccCCEeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCC
Q 039262 572 AKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSD 650 (885)
Q Consensus 572 ~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~ 650 (885)
| .+.+.|..+.+-+++-.|+||+|+|..+|.. +.+|+.|-+|||++| .++.+|+. +..|.+|++|.+++|.....
T Consensus 113 N-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hf- 188 (1255)
T KOG0444|consen 113 N-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHF- 188 (1255)
T ss_pred h-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHH-
Confidence 9 8999999999999999999999999999965 678999999999999 78999998 89999999999998765431
Q ss_pred CcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccc
Q 039262 651 GIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELE 730 (885)
Q Consensus 651 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~ 730 (885)
.+..|-+++.|++|.+++.+-. +..+........+|..+.++. +++..+|. .+-++.+|+.|++++|. ++
T Consensus 189 ------QLrQLPsmtsL~vLhms~TqRT-l~N~Ptsld~l~NL~dvDlS~-N~Lp~vPe-cly~l~~LrrLNLS~N~-it 258 (1255)
T KOG0444|consen 189 ------QLRQLPSMTSLSVLHMSNTQRT-LDNIPTSLDDLHNLRDVDLSE-NNLPIVPE-CLYKLRNLRRLNLSGNK-IT 258 (1255)
T ss_pred ------HHhcCccchhhhhhhcccccch-hhcCCCchhhhhhhhhccccc-cCCCcchH-HHhhhhhhheeccCcCc-ee
Confidence 2344555566666766654321 111111111224556666654 33343432 45567788888888874 33
Q ss_pred eEEecccccccCCCcccccCcccEEEeccCCCCCCCCc-cCCCCCcceEeEecccc-ccccccccc--------------
Q 039262 731 ELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF-LAFAPNLKSIEVNSCHG-IQEIVSDVP-------------- 794 (885)
Q Consensus 731 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~-l~~i~~~~~-------------- 794 (885)
.+..... .-.+|++|+++. +.++.+|. +.+|++|+.|.+.++.. .+.||+...
T Consensus 259 eL~~~~~----------~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~ 327 (1255)
T KOG0444|consen 259 ELNMTEG----------EWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK 327 (1255)
T ss_pred eeeccHH----------HHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc
Confidence 3322211 245677777766 46666663 56666666666655321 112222100
Q ss_pred -c-ccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCC
Q 039262 795 -E-VMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 795 -~-~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~ 846 (885)
+ .+..+..+++|+.|.|+. +.|-.+|....-+|.|+.|++..+|+|..-|.
T Consensus 328 LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 328 LELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 0 113566778888888874 67777777777788888888888888875443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-21 Score=205.16 Aligned_cols=276 Identities=22% Similarity=0.301 Sum_probs=166.8
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCCCCcccc-chhhhccCCCcEE
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSDTNVAVL-PKELNALVNLKCL 614 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i~~L-p~~l~~L~~L~~L 614 (885)
.+++.|+|++| .++.+..+-|..+.+|-.|.|+.| .++.+|.- |.+|++|+.|+|..|.|+.. .-.+..|.+|+.|
T Consensus 173 ~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nl 250 (873)
T KOG4194|consen 173 VNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNL 250 (873)
T ss_pred CCceEEeeccc-cccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhh
Confidence 34444444444 444444444444444444444444 44444432 22355555555555544444 2334445555555
Q ss_pred ecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccce
Q 039262 615 NLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQ 694 (885)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 694 (885)
.+..| .+..+..|++..|.++++|++..|.+... .-+.+-+|+.|+.|+++.|.+..+... ...+..+|+
T Consensus 251 klqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-------n~g~lfgLt~L~~L~lS~NaI~rih~d--~WsftqkL~ 320 (873)
T KOG4194|consen 251 KLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAV-------NEGWLFGLTSLEQLDLSYNAIQRIHID--SWSFTQKLK 320 (873)
T ss_pred hhhhc-CcccccCcceeeecccceeecccchhhhh-------hcccccccchhhhhccchhhhheeecc--hhhhcccce
Confidence 55544 34455555555666666666665554432 234466788888888888887655432 223346888
Q ss_pred eeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCC----CC-Ccc
Q 039262 695 ALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLK----DL-TFL 769 (885)
Q Consensus 695 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~----~l-~~l 769 (885)
.|+|++ +.++.++..++..++.|++|.++.|. +..+....+. .+++|++|+|++. .+. +- ..+
T Consensus 321 ~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~---------~lssL~~LdLr~N-~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 321 ELDLSS-NRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFV---------GLSSLHKLDLRSN-ELSWCIEDAAVAF 388 (873)
T ss_pred eEeccc-cccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHH---------HhhhhhhhcCcCC-eEEEEEecchhhh
Confidence 888887 45677777788888899999998874 3333222121 4789999999873 222 21 135
Q ss_pred CCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCC-CCCCCCCcceEEEc------cCCCCC
Q 039262 770 AFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYW-KPLPFPHLKEMKVI------HCNKLK 842 (885)
Q Consensus 770 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~-~~~~~p~L~~L~i~------~c~~L~ 842 (885)
..+++|+.|.+.+ +.++.|+. .++.+|+.|+.|+|.+.+ +.+|.. .+..+ .|++|.+. +| .|+
T Consensus 389 ~gl~~LrkL~l~g-Nqlk~I~k------rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nSssflCDC-ql~ 458 (873)
T KOG4194|consen 389 NGLPSLRKLRLTG-NQLKSIPK------RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNSSSFLCDC-QLK 458 (873)
T ss_pred ccchhhhheeecC-ceeeecch------hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcccceEEec-cHH
Confidence 6799999999999 57888887 468899999999999854 455433 23344 67777654 56 566
Q ss_pred CCCC
Q 039262 843 KLPL 846 (885)
Q Consensus 843 ~lp~ 846 (885)
-++.
T Consensus 459 Wl~q 462 (873)
T KOG4194|consen 459 WLAQ 462 (873)
T ss_pred HHHH
Confidence 5554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.5e-19 Score=224.96 Aligned_cols=313 Identities=19% Similarity=0.281 Sum_probs=234.4
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF 576 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~ 576 (885)
+...+..++.+|....+.+++.|++.++.+..++. +..+++|+.|+++++..+..+|. +..+++|+.|+|++|..+.
T Consensus 594 L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~ 671 (1153)
T PLN03210 594 LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV 671 (1153)
T ss_pred EEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc
Confidence 33344445556655567899999999999888754 57789999999999867778875 7889999999999998899
Q ss_pred cCchhHhccccCCEeecCCC-CccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccc
Q 039262 577 YFPLVISKLVSLQHLDLSDT-NVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIRE 655 (885)
Q Consensus 577 ~lp~~i~~L~~L~~L~L~~~-~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 655 (885)
.+|.+++++.+|++|++++| .++.+|..+ ++++|++|++++|..+..+|. ..++|+.|++.++.+.........
T Consensus 672 ~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l 746 (1153)
T PLN03210 672 ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRL 746 (1153)
T ss_pred ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccccc
Confidence 99999999999999999997 789999876 799999999999987777774 246788888877764332100000
Q ss_pred cchh----------------------hhcCCCCccEEEEEeccc-chhhhhhccccccccceeeEecCCCCCCccccccc
Q 039262 656 GELE----------------------ELLGLKYLEVLSLTLNNS-RALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSAL 712 (885)
Q Consensus 656 ~~~~----------------------~l~~L~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 712 (885)
..+. .....++|+.|+++.+.. ..++.. ...+++|+.|.+.+|..++.++..
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~s---i~~L~~L~~L~Ls~C~~L~~LP~~-- 821 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS---IQNLHKLEHLEIENCINLETLPTG-- 821 (1153)
T ss_pred cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChh---hhCCCCCCEEECCCCCCcCeeCCC--
Confidence 0000 011134677777776542 222222 223468999999999888877643
Q ss_pred ccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEecccccccccc
Q 039262 713 ADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVS 791 (885)
Q Consensus 713 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~ 791 (885)
.++++|++|++++|..+..++ ....+|+.|+|++ +.++.+| ++..+++|+.|+|++|+.++.++.
T Consensus 822 ~~L~sL~~L~Ls~c~~L~~~p-------------~~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 822 INLESLESLDLSGCSRLRTFP-------------DISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred CCccccCEEECCCCCcccccc-------------ccccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 268899999999998776432 1356899999998 4788887 588999999999999999998875
Q ss_pred ccccccccCccCCccceeecCCcccccccCCCC-------------CCCCCcceEEEccCCCCCC
Q 039262 792 DVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKP-------------LPFPHLKEMKVIHCNKLKK 843 (885)
Q Consensus 792 ~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~-------------~~~p~L~~L~i~~c~~L~~ 843 (885)
....+++|+.|++++|++|+.++... ..+|+...+.+.+|.+|..
T Consensus 888 -------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 888 -------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred -------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 56778999999999999988665421 1356667778888888764
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=7.9e-20 Score=227.91 Aligned_cols=309 Identities=17% Similarity=0.179 Sum_probs=183.7
Q ss_pred cccceeEEEeecCCccc-CCC-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCE
Q 039262 513 KWEKVRRLSLMENQIDN-LSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQH 590 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~-l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (885)
.++++++|++.+|.+.. +|. +..+++|++|++++|.....+|.. +.++++|++|+|++|.....+|..++++.+|++
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 45577777777776643 332 456777777777777323344443 667777777777777333456777777777777
Q ss_pred eecCCCCcc-ccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 591 LDLSDTNVA-VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 591 L~L~~~~i~-~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
|+|++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++..|.+... .+..+..+++|+.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~ 288 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-------IPPSIFSLQKLIS 288 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-------CchhHhhccCcCE
Confidence 777777664 56777777777777777777544455554 67777777777776654331 2334455555555
Q ss_pred EEEEecccch-hhhhhcc---------------------ccccccceeeEecCCCCCCcccccccccCCCcceEeecccC
Q 039262 670 LSLTLNNSRA-LHCVLSS---------------------HRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECY 727 (885)
Q Consensus 670 L~l~~~~~~~-~~~~~~~---------------------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 727 (885)
|+++.|.... ++..... ....++|+.|.+.++.-...++ ..+..+++|+.|++++|.
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCe
Confidence 5555444321 1111110 0011334444444432211111 123344455555555443
Q ss_pred ccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEeccccccccccccccccccCccCCcc
Q 039262 728 ELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKL 806 (885)
Q Consensus 728 ~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L 806 (885)
....+ +.+.. .+++|+.|+++++.-...+| .++.+++|+.|++++|.....++. .+..+++|
T Consensus 368 l~~~~-p~~~~---------~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-------~~~~l~~L 430 (968)
T PLN00113 368 LTGEI-PEGLC---------SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-------EFTKLPLV 430 (968)
T ss_pred eEeeC-ChhHh---------CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-------hHhcCCCC
Confidence 22211 11111 35677778887764333444 467788899999988754434433 56789999
Q ss_pred ceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCCC
Q 039262 807 QYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLDS 848 (885)
Q Consensus 807 ~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~~ 848 (885)
+.|+++++.-...++.....+|+|+.|++.+|.-...+|...
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred CEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 999999876555555555679999999999997766777644
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=9.6e-21 Score=200.15 Aligned_cols=317 Identities=19% Similarity=0.254 Sum_probs=235.1
Q ss_pred cccccceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc--cCchhHhcccc
Q 039262 511 VRKWEKVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF--YFPLVISKLVS 587 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~--~lp~~i~~L~~ 587 (885)
...++.++.|.+....+..+|. +..|.+|+.|.+.+| .+.++... +..++.||.+++.+| +++ -+|..|..|..
T Consensus 28 v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 28 VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKD 104 (1255)
T ss_pred HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhccccc
Confidence 3455688999998888888876 578899999999999 67677655 789999999999999 665 48999999999
Q ss_pred CCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCc
Q 039262 588 LQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYL 667 (885)
Q Consensus 588 L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L 667 (885)
|..||||+|++++.|..+.+-+|+-.|+|++| .++.+|..++-+|+-|-.|++++|.... .+.....|.+|
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~--------LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM--------LPPQIRRLSML 175 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh--------cCHHHHHHhhh
Confidence 99999999999999999999999999999999 7899999888999999999999987654 45668889999
Q ss_pred cEEEEEecccchhhhhhccccccccceeeEecCCCC-CCcccccccccCCCcceEeecccCccceEEecccccccCCCcc
Q 039262 668 EVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKS-SKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQP 746 (885)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~ 746 (885)
++|.+++|+...++- .....+.+|+.|.+++... +..+| .++..+.+|..++++.| .+..+|....
T Consensus 176 qtL~Ls~NPL~hfQL--rQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N-~Lp~vPecly--------- 242 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQL--RQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSEN-NLPIVPECLY--------- 242 (1255)
T ss_pred hhhhcCCChhhHHHH--hcCccchhhhhhhcccccchhhcCC-Cchhhhhhhhhcccccc-CCCcchHHHh---------
Confidence 999999987643321 0111124556666655332 22233 25777899999999887 4443333333
Q ss_pred cccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEecccccccccccc------------------ccccccCccCCccc
Q 039262 747 FVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDV------------------PEVMRNLNLFAKLQ 807 (885)
Q Consensus 747 ~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~------------------~~~~~~~~~~p~L~ 807 (885)
.+++|+.|+|++ +.++.+. ..+.-.+|+.|+++. +.++.+|... .+.++.++.+.+|+
T Consensus 243 -~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 243 -KLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred -hhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence 388999999999 5788885 355668999999999 4677777621 12223444455555
Q ss_pred eeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCCCCccccceEEE
Q 039262 808 YLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLDSNSAKERKIVI 858 (885)
Q Consensus 808 ~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~~~~~l~~i 858 (885)
.+...+ ++|+-.|.+...|+.|+.|.+ +|+.|-.||.++.. +..+.+.
T Consensus 320 vf~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHl-L~~l~vL 367 (1255)
T KOG0444|consen 320 VFHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHL-LPDLKVL 367 (1255)
T ss_pred HHHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhh-cCCccee
Confidence 555544 456666666677888888888 56688888887754 3334433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=2.5e-19 Score=180.75 Aligned_cols=307 Identities=22% Similarity=0.269 Sum_probs=199.0
Q ss_pred CcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCC
Q 039262 510 DVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQ 589 (885)
Q Consensus 510 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (885)
..+.++++..|+++.|.+..+|.++.|..|..|.+..| .+..+|....+++.+|.+|||.+| .++++|..++.|.+|.
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 45667889999999999999999999999999999999 898999998889999999999999 9999999999999999
Q ss_pred EeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCC--CCcEEEe--ecccccCCCC------cccccchh
Q 039262 590 HLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFS--SLHVLRM--FGIGYSSSDG------IIREGELE 659 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~--~L~~L~l--~~~~~~~~~~------~~~~~~~~ 659 (885)
+||+|+|.|..+|.++++| .|+.|-+.||+ +..+-.+++.+-+ =|++|.- ..-+.+...+ ......+.
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 9999999999999999999 99999999994 4555444333221 1233321 0001110000 11112333
Q ss_pred hhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCC----------------------CCCcccccccccCCC
Q 039262 660 ELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFK----------------------SSKSLDVSALADLKH 717 (885)
Q Consensus 660 ~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~~l~~l~~ 717 (885)
......+.+.|+++..+...++.-.+......-.....++... +..++....++.+++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 3445566677777766555444332221111112222322211 001111112344556
Q ss_pred cceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEecccccccccccccccc
Q 039262 718 LKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVM 797 (885)
Q Consensus 718 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 797 (885)
|..|++++| .+.++|.++.. +..|+.|+++. ++...+|-..+.+...++.+...+.+..++.
T Consensus 437 Lt~L~L~NN-~Ln~LP~e~~~----------lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~------ 498 (565)
T KOG0472|consen 437 LTFLDLSNN-LLNDLPEEMGS----------LVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDP------ 498 (565)
T ss_pred ceeeecccc-hhhhcchhhhh----------hhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccCh------
Confidence 666666655 34444444432 45566666665 3555555433333222333333345555543
Q ss_pred ccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCC
Q 039262 798 RNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 798 ~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
..++.+.+|..|+|.+ +.+..+|-..+.|.+|++|++.+.|
T Consensus 499 ~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCc
Confidence 3477889999999997 6789999889999999999999996
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.60 E-value=5.8e-18 Score=170.98 Aligned_cols=261 Identities=22% Similarity=0.306 Sum_probs=135.5
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecC
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLE 617 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~ 617 (885)
-|..|++++| .+..+.+. +.++..|.+|++++| .+..+|.+|+.+..++.|+.++|++.++|+.++.+.+|++|+.+
T Consensus 46 ~l~~lils~N-~l~~l~~d-l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHN-DLEVLRED-LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccC-chhhccHh-hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 3445555555 34444443 455666666666666 56666666666666666666666666666666666666666666
Q ss_pred CccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeE
Q 039262 618 NAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALY 697 (885)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 697 (885)
.| .+..+|++ ++.+..|..|+..+|.+.+ .++++.++.+|..+.+.++....++.-.-. ++.+++|+
T Consensus 123 ~n-~~~el~~~-i~~~~~l~dl~~~~N~i~s--------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~---m~~L~~ld 189 (565)
T KOG0472|consen 123 SN-ELKELPDS-IGRLLDLEDLDATNNQISS--------LPEDMVNLSKLSKLDLEGNKLKALPENHIA---MKRLKHLD 189 (565)
T ss_pred cc-ceeecCch-HHHHhhhhhhhcccccccc--------CchHHHHHHHHHHhhccccchhhCCHHHHH---HHHHHhcc
Confidence 66 34555554 5566666666555555443 234444444454454444443222111000 11222222
Q ss_pred ecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc--cCCCCCc
Q 039262 698 LKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF--LAFAPNL 775 (885)
Q Consensus 698 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~~L 775 (885)
... +.++.+|. .+..+.+|..|++..|. +..+ |++. .++.|++|+++. +.++.+|. +.++++|
T Consensus 190 ~~~-N~L~tlP~-~lg~l~~L~~LyL~~Nk-i~~l-Pef~----------gcs~L~Elh~g~-N~i~~lpae~~~~L~~l 254 (565)
T KOG0472|consen 190 CNS-NLLETLPP-ELGGLESLELLYLRRNK-IRFL-PEFP----------GCSLLKELHVGE-NQIEMLPAEHLKHLNSL 254 (565)
T ss_pred cch-hhhhcCCh-hhcchhhhHHHHhhhcc-cccC-CCCC----------ccHHHHHHHhcc-cHHHhhHHHHhcccccc
Confidence 111 11222221 34455556666665553 2222 2333 255666666655 45555552 3456666
Q ss_pred ceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCC
Q 039262 776 KSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 776 ~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
..|++.+ +.++++|. .+..+.+|++|++++ +.+..++...+.+ .|+.|-+.+.|
T Consensus 255 ~vLDLRd-Nklke~Pd-------e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPD-------EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeeccc-cccccCch-------HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 6666666 35555554 344556666666665 4455565555555 56666666655
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.7e-14 Score=166.53 Aligned_cols=256 Identities=21% Similarity=0.210 Sum_probs=179.9
Q ss_pred ccccEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCC
Q 039262 493 EKEDYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGA 572 (885)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~ 572 (885)
+....+...+..++.+|.. -+.+++.|++.+|.+..+|.. .++|++|++++| .+..+|.. .++|+.|+|++|
T Consensus 201 ~~~~~LdLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l----p~sL~~L~Ls~N 272 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGN-QLTSLPVL----PPGLLELSIFSN 272 (788)
T ss_pred CCCcEEEcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCC-ccCcccCc----ccccceeeccCC
Confidence 3345566666677777652 235789999999999888764 589999999999 78788752 468999999999
Q ss_pred CccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 573 KQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 573 ~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
.+..+|.. ..+|+.|++++|+++.+|.. +++|++|++++| .+..+|.. ..+|+.|++.+|.+....
T Consensus 273 -~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~LP-- 338 (788)
T PRK15387 273 -PLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSLP-- 338 (788)
T ss_pred -chhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccccc--
Confidence 78888863 36788999999999999863 478999999998 67777752 235777888777654311
Q ss_pred ccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceE
Q 039262 653 IREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEEL 732 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 732 (885)
. ...+|+.|+++.|.+..++.. ..+++.|.+.++ .+..++. + ..+|+.|++++|. +..+
T Consensus 339 -------~--lp~~Lq~LdLS~N~Ls~LP~l------p~~L~~L~Ls~N-~L~~LP~--l--~~~L~~LdLs~N~-Lt~L 397 (788)
T PRK15387 339 -------T--LPSGLQELSVSDNQLASLPTL------PSELYKLWAYNN-RLTSLPA--L--PSGLKELIVSGNR-LTSL 397 (788)
T ss_pred -------c--cccccceEecCCCccCCCCCC------Ccccceehhhcc-ccccCcc--c--ccccceEEecCCc-ccCC
Confidence 1 124788999988887765542 246677776653 3333331 1 2578888888773 3322
Q ss_pred EecccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecC
Q 039262 733 KMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLS 812 (885)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~ 812 (885)
+. .+++|+.|+++++ .++.+|.+ ..+|+.|++++| .++.+|. .+..+++|+.|+|+
T Consensus 398 P~-------------l~s~L~~LdLS~N-~LssIP~l--~~~L~~L~Ls~N-qLt~LP~-------sl~~L~~L~~LdLs 453 (788)
T PRK15387 398 PV-------------LPSELKELMVSGN-RLTSLPML--PSGLLSLSVYRN-QLTRLPE-------SLIHLSSETTVNLE 453 (788)
T ss_pred CC-------------cccCCCEEEccCC-cCCCCCcc--hhhhhhhhhccC-cccccCh-------HHhhccCCCeEECC
Confidence 11 2467888888885 67777743 357888888874 5777765 46678888888888
Q ss_pred Ccc
Q 039262 813 SLS 815 (885)
Q Consensus 813 ~~~ 815 (885)
+++
T Consensus 454 ~N~ 456 (788)
T PRK15387 454 GNP 456 (788)
T ss_pred CCC
Confidence 765
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.55 E-value=4.7e-15 Score=175.15 Aligned_cols=324 Identities=22% Similarity=0.295 Sum_probs=206.9
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCC--cccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQ--IDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~--~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
++..+.....++.....++++.|-+..|. +..++. +..++.||+|+|++|..+..+|.. ++.+-+||||+|+++
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t- 605 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT- 605 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-
Confidence 33333344444444455689999999986 566665 688999999999999888999987 899999999999999
Q ss_pred ccccCchhHhccccCCEeecCCCC-ccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 574 QLFYFPLVISKLVSLQHLDLSDTN-VAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 574 ~i~~lp~~i~~L~~L~~L~L~~~~-i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
.+..+|.++++|..|.|||+..+. +..+|..+..|.+||+|.+.... .......++.+.+|++|....+.....
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~--- 680 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSV--- 680 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchh---
Confidence 999999999999999999999984 45556666779999999997763 111222255666666666555433321
Q ss_pred ccccchhhhcCCCCccEEEEEec-ccchhhhhhccccccccceeeEecCCCCCCcccc--cc--ccc-CCCcceEeeccc
Q 039262 653 IREGELEELLGLKYLEVLSLTLN-NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDV--SA--LAD-LKHLKRLQIVEC 726 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~--l~~-l~~L~~L~l~~~ 726 (885)
..+..+..+..|..+..... ................+++.|.+.+|...+.... .. ... ++++..+.+.+|
T Consensus 681 ---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 681 ---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred ---HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 11233333333332211111 0011112222233346888888888876432110 01 111 446777777777
Q ss_pred CccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEeccccccccccccccccccCccCCc
Q 039262 727 YELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAK 805 (885)
Q Consensus 727 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~ 805 (885)
..... +.|.. ..++|+.|.+..|..++++. ....+..+..+.+..+ .+.... .....++||+
T Consensus 758 ~~~r~--l~~~~---------f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~-~~~~l~-----~~~~l~~l~~ 820 (889)
T KOG4658|consen 758 HMLRD--LTWLL---------FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN-KLEGLR-----MLCSLGGLPQ 820 (889)
T ss_pred ccccc--cchhh---------ccCcccEEEEecccccccCCCHHHHhhhcccEEeccc-ccccce-----eeecCCCCce
Confidence 76663 44443 47899999999998888764 3444555554333222 222221 1124556666
Q ss_pred cceeecCCcccccccCCCC----CCCCCcceEEEccC-CCCCCCCCCCC
Q 039262 806 LQYLGLSSLSNFQSIYWKP----LPFPHLKEMKVIHC-NKLKKLPLDSN 849 (885)
Q Consensus 806 L~~L~L~~~~~l~~i~~~~----~~~p~L~~L~i~~c-~~L~~lp~~~~ 849 (885)
+..+.+... .+..|.... ..+|.+.++.+.+| +++..+|.+-.
T Consensus 821 i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~ 868 (889)
T KOG4658|consen 821 LYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEW 868 (889)
T ss_pred eEecccCcc-chhheehhcCcccccCccccccceeccccceeecCCccc
Confidence 666666653 255555544 55899999999997 89999998643
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.8e-16 Score=141.75 Aligned_cols=167 Identities=23% Similarity=0.352 Sum_probs=142.6
Q ss_pred cCCCCCcccccceeEEEeecCCcccCC-CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHh
Q 039262 505 LSEAPDVRKWEKVRRLSLMENQIDNLS-GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVIS 583 (885)
Q Consensus 505 ~~~~~~~~~~~~lr~L~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~ 583 (885)
+.+++.....+.+.+|.++.|.+..+| .+..+.+|++|++++| .+..+|.+ ++.++.||.|+++-| .+..+|..+|
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~-issl~klr~lnvgmn-rl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChh-hhhchhhhheecchh-hhhcCccccC
Confidence 334566667788999999999988775 4688999999999999 89999987 889999999999988 8889999999
Q ss_pred ccccCCEeecCCCCc--cccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhh
Q 039262 584 KLVSLQHLDLSDTNV--AVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEEL 661 (885)
Q Consensus 584 ~L~~L~~L~L~~~~i--~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 661 (885)
.++-|+.|||.+|++ ..+|..+..+..|+-|+++.| ..+.+|++ ++++++||.|.+.++.... .+.++
T Consensus 100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~--------lpkei 169 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS--------LPKEI 169 (264)
T ss_pred CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh--------CcHHH
Confidence 999999999999987 568988888999999999999 56888988 8999999999998887654 56788
Q ss_pred cCCCCccEEEEEecccchhhhhh
Q 039262 662 LGLKYLEVLSLTLNNSRALHCVL 684 (885)
Q Consensus 662 ~~L~~L~~L~l~~~~~~~~~~~~ 684 (885)
+.|..|+.|++.+|....++.-+
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 99999999999998876665443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.51 E-value=1.3e-13 Score=159.32 Aligned_cols=255 Identities=20% Similarity=0.173 Sum_probs=191.0
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
+-..|.+..+.+..+|... .++|+.|++.+| .++.+|. .+++|++|+|++| .++.+|.. ..+|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCC-cCCCCCC----CCCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 3457888889888887632 258999999999 7888875 2589999999999 89999853 47899999999
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
|.+..+|.. +.+|+.|++++| .+..+|. .+++|+.|++.+|.+.... . ...+|+.|+++.|
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~Lp---------~--lp~~L~~L~Ls~N 332 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASLP---------A--LPSELCKLWAYNN 332 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccCC---------C--CcccccccccccC
Confidence 999999863 367889999999 6788885 3478999999988765421 1 1235777888888
Q ss_pred ccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEE
Q 039262 676 NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKI 755 (885)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 755 (885)
.+..++.+ ..+|+.|.++++ .++.++. + ..+|+.|++++|. +..++. .+.+|+.|
T Consensus 333 ~L~~LP~l------p~~Lq~LdLS~N-~Ls~LP~--l--p~~L~~L~Ls~N~-L~~LP~-------------l~~~L~~L 387 (788)
T PRK15387 333 QLTSLPTL------PSGLQELSVSDN-QLASLPT--L--PSELYKLWAYNNR-LTSLPA-------------LPSGLKEL 387 (788)
T ss_pred cccccccc------ccccceEecCCC-ccCCCCC--C--Ccccceehhhccc-cccCcc-------------cccccceE
Confidence 77665542 247889999874 4454442 2 3578888888773 433321 24679999
Q ss_pred EeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEE
Q 039262 756 QIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKV 835 (885)
Q Consensus 756 ~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i 835 (885)
+++++ .++.+|.. .++|+.|++++| .+..+|. .+.+|+.|++++ ++++.+|.....+++|+.|++
T Consensus 388 dLs~N-~Lt~LP~l--~s~L~~LdLS~N-~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdL 452 (788)
T PRK15387 388 IVSGN-RLTSLPVL--PSELKELMVSGN-RLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNL 452 (788)
T ss_pred EecCC-cccCCCCc--ccCCCEEEccCC-cCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEEC
Confidence 99985 67877754 478999999996 4666653 135788999987 568888877778999999999
Q ss_pred ccCC
Q 039262 836 IHCN 839 (885)
Q Consensus 836 ~~c~ 839 (885)
++++
T Consensus 453 s~N~ 456 (788)
T PRK15387 453 EGNP 456 (788)
T ss_pred CCCC
Confidence 9885
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.46 E-value=2.7e-15 Score=167.29 Aligned_cols=266 Identities=23% Similarity=0.283 Sum_probs=129.0
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
++++|....|.+..+...+.-.+|.+++++.| .+..+| ++++.+.+|+.|+..+| .+..+|..+....+|++|++..
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchh-hhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 34444444443332222222334455555544 444444 34445555555555555 4445555555555555555555
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccchhhcCCCC-CcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSS-LHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|.++.+|.....++.|++|+|..| .+..+|+..+..+.. |+.|..+.+...... .. +=..++.|+.|.+.+
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp------~~-~e~~~~~Lq~Lylan 368 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLP------SY-EENNHAALQELYLAN 368 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccc------cc-cchhhHHHHHHHHhc
Confidence 555555544444555555555544 344444432222221 333332222211110 00 001122344444444
Q ss_pred cccc--hhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcc
Q 039262 675 NNSR--ALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSL 752 (885)
Q Consensus 675 ~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 752 (885)
|... .++.+. ...+|+.|.|.++ .+..++.+.+.++..|++|+++|| .++.++.+.. .+..|
T Consensus 369 N~Ltd~c~p~l~----~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva----------~~~~L 432 (1081)
T KOG0618|consen 369 NHLTDSCFPVLV----NFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVA----------NLGRL 432 (1081)
T ss_pred Ccccccchhhhc----cccceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHH----------hhhhh
Confidence 4321 122211 1246777777663 345555556777777777777777 4555543332 36677
Q ss_pred cEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCccc
Q 039262 753 RKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSN 816 (885)
Q Consensus 753 ~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~ 816 (885)
++|...+ +.+..+|.+.+++.|+.++|+. +.+..+.... ...+ |+|++|+|++.+.
T Consensus 433 ~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~-----~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 433 HTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPE-----ALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhh-----hCCC-cccceeeccCCcc
Confidence 7777665 4666677777777788887765 4455442211 1111 6778888877654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.46 E-value=2.7e-13 Score=157.92 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=61.6
Q ss_pred cceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 515 EKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
+.++.|.+.+|.+..+|.. .+++|++|++++| .+..+|..+. .+|+.|+|++| .+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~-l~~nL~~L~Ls~N-~LtsLP~~l~---~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPEN-LQGNIKTLYANSN-QLTSIPATLP---DTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChh-hccCCCEEECCCC-ccccCChhhh---ccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 3555666666655555432 1245666666655 4555554322 24566666666 5555555543 356666666
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|++..+|..+. .+|++|++++| .+..+|.. + .++|+.|++.+|.+
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-L--PSGITHLNVQSNSL 316 (754)
T ss_pred CCccCccccccC--CCCcEEECCCC-ccccCccc-c--hhhHHHHHhcCCcc
Confidence 666655555443 35666666655 44555542 1 13455555555443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.43 E-value=6e-15 Score=164.60 Aligned_cols=287 Identities=23% Similarity=0.293 Sum_probs=207.7
Q ss_pred cceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 515 EKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
.+++.+....|.+..+. ...++|+.|..+.|. +..+... ..-.+|++++++++ .+..+|+.++.+.+|+.|+..
T Consensus 199 ~~l~~l~c~rn~ls~l~--~~g~~l~~L~a~~n~-l~~~~~~--p~p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 199 ANLEVLHCERNQLSELE--ISGPSLTALYADHNP-LTTLDVH--PVPLNLQYLDISHN-NLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred cchhhhhhhhcccceEE--ecCcchheeeeccCc-ceeeccc--cccccceeeecchh-hhhcchHHHHhcccceEeccc
Confidence 34444444444444332 344789999999994 4433332 23467999999999 899999999999999999999
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCC-CccEEEEE
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLK-YLEVLSLT 673 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~ 673 (885)
+|.+..+|..+....+|+.|.+..| .++.+|+. ...+++|++|++..|.+.... ...+..+. .|+.|..+
T Consensus 273 ~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~-le~~~sL~tLdL~~N~L~~lp-------~~~l~v~~~~l~~ln~s 343 (1081)
T KOG0618|consen 273 HNRLVALPLRISRITSLVSLSAAYN-ELEYIPPF-LEGLKSLRTLDLQSNNLPSLP-------DNFLAVLNASLNTLNVS 343 (1081)
T ss_pred chhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc-ccccceeeeeeehhccccccc-------hHHHhhhhHHHHHHhhh
Confidence 9999999999999999999999999 68999985 677999999999988765532 12222222 25555555
Q ss_pred ecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCccc
Q 039262 674 LNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLR 753 (885)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~ 753 (885)
.+.....+.... .....|+.|++.++ .++.-.+..+.++.+|+.|++++| .+.+++..... .+..|+
T Consensus 344 ~n~l~~lp~~~e--~~~~~Lq~LylanN-~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~---------kle~Le 410 (1081)
T KOG0618|consen 344 SNKLSTLPSYEE--NNHAALQELYLANN-HLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLR---------KLEELE 410 (1081)
T ss_pred hccccccccccc--hhhHHHHHHHHhcC-cccccchhhhccccceeeeeeccc-ccccCCHHHHh---------chHHhH
Confidence 555554443222 12346777777663 334333346788999999999998 45555555544 588999
Q ss_pred EEEeccCCCCCCCC-ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCC-CCCCCcc
Q 039262 754 KIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKP-LPFPHLK 831 (885)
Q Consensus 754 ~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~-~~~p~L~ 831 (885)
.|+|+| ++++.+| .+..++.|+.|...++ .+...| .+..+|.|+.++++ |++|..+.... ...|+|+
T Consensus 411 eL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN-~l~~fP--------e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 411 ELNLSG-NKLTTLPDTVANLGRLHTLRAHSN-QLLSFP--------ELAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HHhccc-chhhhhhHHHHhhhhhHHHhhcCC-ceeech--------hhhhcCcceEEecc-cchhhhhhhhhhCCCcccc
Confidence 999999 6899998 4778899999998774 565555 35678999999998 46777655432 2348999
Q ss_pred eEEEccCCC
Q 039262 832 EMKVIHCNK 840 (885)
Q Consensus 832 ~L~i~~c~~ 840 (885)
+|+++++++
T Consensus 480 yLdlSGN~~ 488 (1081)
T KOG0618|consen 480 YLDLSGNTR 488 (1081)
T ss_pred eeeccCCcc
Confidence 999999875
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.43 E-value=3.7e-13 Score=156.82 Aligned_cols=248 Identities=17% Similarity=0.200 Sum_probs=168.8
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
+...|.+.++.+..+|... .++|+.|++++| .+..+|..++ .+|++|++++| .++.+|..+. .+|+.|+|++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N-~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNN-ELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCC-CCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 4567888888877777521 358999999999 7888987654 58999999999 8999998764 5899999999
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
|.+..+|..+. .+|+.|++++| .+..+|.. + .++|++|++++|.+.... ..+ .++|+.|+++.|
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP--------~~l--p~sL~~L~Ls~N 314 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPEN-L--PEELRYLSVYDNSIRTLP--------AHL--PSGITHLNVQSN 314 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCccccc-c--CCCCcEEECCCCccccCc--------ccc--hhhHHHHHhcCC
Confidence 99999998765 58999999988 67888875 3 258999999988765421 111 135777778777
Q ss_pred ccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEE
Q 039262 676 NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKI 755 (885)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 755 (885)
....++.. ...+|+.|.+.++. ++.++. .+ +++|+.|++++|. +..++. . .+++|+.|
T Consensus 315 ~Lt~LP~~-----l~~sL~~L~Ls~N~-Lt~LP~-~l--~~sL~~L~Ls~N~-L~~LP~-~-----------lp~~L~~L 372 (754)
T PRK15370 315 SLTALPET-----LPPGLKTLEAGENA-LTSLPA-SL--PPELQVLDVSKNQ-ITVLPE-T-----------LPPTITTL 372 (754)
T ss_pred ccccCCcc-----ccccceeccccCCc-cccCCh-hh--cCcccEEECCCCC-CCcCCh-h-----------hcCCcCEE
Confidence 76544321 12467777777653 333432 22 2578888888774 333321 1 24578888
Q ss_pred EeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcc
Q 039262 756 QIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 756 ~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
+|++| .+..+|.- -.++|+.|++++| .+..+|.... .....+|++..|.+.+++
T Consensus 373 dLs~N-~Lt~LP~~-l~~sL~~LdLs~N-~L~~LP~sl~---~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 373 DVSRN-ALTNLPEN-LPAALQIMQASRN-NLVRLPESLP---HFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred ECCCC-cCCCCCHh-HHHHHHHHhhccC-CcccCchhHH---HHhhcCCCccEEEeeCCC
Confidence 88875 56666631 1236778888774 4556554211 123445777777777654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=5.9e-15 Score=132.15 Aligned_cols=141 Identities=23% Similarity=0.333 Sum_probs=116.6
Q ss_pred cccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhh
Q 039262 527 IDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELN 606 (885)
Q Consensus 527 ~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~ 606 (885)
+.++++...++++..|.+++| .+..+|++ +..+++|++|++++| .++++|.+|+.++.|+.|++.-|++..+|.+++
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345666778889999999999 78888888 788999999999999 999999999999999999999999999999999
Q ss_pred ccCCCcEEecCCccccc-cccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccch
Q 039262 607 ALVNLKCLNLENAWMLT-VIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 607 ~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
.++-|+.||+..|..-+ .+|.. +-.++.|+.|++.++.+.- .+.+.+.|++|+.|.+..|...+
T Consensus 100 s~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~--------lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI--------LPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred CCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc--------CChhhhhhcceeEEeeccCchhh
Confidence 99999999999884333 35644 6677888888888776543 45678888888888877665443
No 22
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=2.6e-11 Score=150.80 Aligned_cols=291 Identities=15% Similarity=0.182 Sum_probs=179.4
Q ss_pred CCcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHc
Q 039262 154 DATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKI 232 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l 232 (885)
.+.++-|++-.+.+-+ ....+++.|.|++|.||||++.++.... . .++|+++.. +.+...+...++..+
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHH
Confidence 3467888766555532 2367899999999999999999988543 2 599999864 445566666666666
Q ss_pred CCCCcc----c-------cccchhHHHHHHHHHhc--cCcEEEEEccccch--hccc-ccccCCCCCCCCCcEEEEecCC
Q 039262 233 GLVNDT----W-------KNRRTEQKALDIFRNLK--EKKFVLLLDDIWER--VDLS-KVGIPLPGRLNNKSKVVFTTRS 296 (885)
Q Consensus 233 ~~~~~~----~-------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~-~~~~~l~~~~~~gs~iivTtR~ 296 (885)
...... . ...+.......+...+. +.+++|||||+... .... .+...+. ....+.++|||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~-~~~~~~~lv~~sR~ 161 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLR-HQPENLTLVVLSRN 161 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHH-hCCCCeEEEEEeCC
Confidence 311100 0 00112223333333333 57999999999432 1122 2222223 34567788899998
Q ss_pred hhH---hhhccCcceEEec----cCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCCh
Q 039262 297 EEV---CGLMEAHKKFKVE----CLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMP 369 (885)
Q Consensus 297 ~~v---~~~~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 369 (885)
..- ...........+. +|+.+|+.+||....+... + .+....|.+.|+|.|+++..++..+......
T Consensus 162 ~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~---~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~ 235 (903)
T PRK04841 162 LPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI---E---AAESSRLCDDVEGWATALQLIALSARQNNSS 235 (903)
T ss_pred CCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC---C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc
Confidence 421 1111122344555 9999999999987765332 1 3447899999999999999888776543211
Q ss_pred HHHHHHHHHHhccCCCCCCC-CcchhhhHHh-hhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhh
Q 039262 370 EEWSYAIQVLRTSSSQFPGL-GNEVYPLLKF-SYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFG 447 (885)
Q Consensus 370 ~~w~~~~~~l~~~~~~~~~~-~~~~~~~l~~-sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 447 (885)
. ......+ .+. ...+...+.- .|+.||+ ..+.+++..|+++ .++.+ +.. .+..
T Consensus 236 ~--~~~~~~~-------~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 236 L--HDSARRL-------AGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMNDA-LIV-----RVTG------ 290 (903)
T ss_pred h--hhhhHhh-------cCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCHH-HHH-----HHcC------
Confidence 0 0101111 111 1235554433 4789999 8999999999987 23322 221 1111
Q ss_pred HHHHHHHHHHHHHHcccccc-c--cCCeEEehHHHHHHHHHHH
Q 039262 448 VQKEGYHIVGTLVHACLLEE-V--EEDEVQMHDVIRDMALWLA 487 (885)
Q Consensus 448 ~~~~~~~~l~~L~~~sll~~-~--~~~~~~mHdlv~d~a~~~~ 487 (885)
.+.+...+++|.+.+++.. . ....|+.|++++++.+...
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1234677999999999753 2 3347999999999998764
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=3.1e-14 Score=144.25 Aligned_cols=292 Identities=17% Similarity=0.199 Sum_probs=161.7
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+.+++++|.. -+.....+.+..|.|..+|. |..+++||.|+|++| .+..|.+..|++++.|-.|-+-++..
T Consensus 50 ~VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCc
Confidence 344455666666542 23466677777777777765 567777888888877 67777777777777777766665337
Q ss_pred cccCchh-HhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 575 LFYFPLV-ISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 575 i~~lp~~-i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
|+.+|.. |++|..|+.|.+.-|++..++ ..+..|++|..|.+..| .+..++.+.+..+.+++++.+..+.+..+.+.
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCcccccccc
Confidence 7777754 677777777777777777666 45777777777777777 56777776667777777776655443221100
Q ss_pred c-----cccchhhhcCCCCccEEEEEecccchhhhhhccccccccceee---EecCCCCCCcccccccccCCCcceEeec
Q 039262 653 I-----REGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQAL---YLKDFKSSKSLDVSALADLKHLKRLQIV 724 (885)
Q Consensus 653 ~-----~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 724 (885)
. ......+++.........+........+. .++.-+++.+ ....|......+...+..+++|+.|+++
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a----~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDA----RKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccch----hhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 0 00000111111111100010000000000 0000011111 1111211222233357778888888888
Q ss_pred ccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCcc
Q 039262 725 ECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNL 802 (885)
Q Consensus 725 ~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~ 802 (885)
+|. +..+...|+. ....++.|.|.. ++++.+. .+..+..|+.|+|.++ .|+.+.. ..+..
T Consensus 283 nN~-i~~i~~~aFe---------~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~------~aF~~ 344 (498)
T KOG4237|consen 283 NNK-ITRIEDGAFE---------GAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAP------GAFQT 344 (498)
T ss_pred CCc-cchhhhhhhc---------chhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEEEec------ccccc
Confidence 874 4434444444 366777777776 4666654 3566777777777773 4555433 24455
Q ss_pred CCccceeecCC
Q 039262 803 FAKLQYLGLSS 813 (885)
Q Consensus 803 ~p~L~~L~L~~ 813 (885)
+.+|.+|.+-.
T Consensus 345 ~~~l~~l~l~~ 355 (498)
T KOG4237|consen 345 LFSLSTLNLLS 355 (498)
T ss_pred cceeeeeehcc
Confidence 55566665543
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.36 E-value=2.3e-10 Score=127.42 Aligned_cols=297 Identities=14% Similarity=0.065 Sum_probs=172.1
Q ss_pred CCcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
++.++||++++++|...+.. .....+.|+|++|+|||++++.++++.. .....-..+++.+....+...++..|+
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 35799999999999998743 3456789999999999999999999872 222223566777777777888999999
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh------cccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV------DLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
.++..........+..+....+.+.+. +++.+||||+++... .+..+...+....+....+|.++....+..
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~ 187 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLY 187 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhh
Confidence 998652211123345566667777765 456899999997532 122222222101111223566666544322
Q ss_pred hcc-------CcceEEeccCChhhHHHHHHHHhcC---CccCCCchhHHHHHHHHHHhCCchhHHHHHHHHh--c--C-C
Q 039262 302 LME-------AHKKFKVECLSHNDAWELFRQKVGG---ETLNCHPDILELAETVAKECGGLPLALITIGRAM--S--C-K 366 (885)
Q Consensus 302 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l--~--~-~ 366 (885)
... ....+.+.+++.++..+++..++.. .....+..++.+++......|..+.|+..+-... + . .
T Consensus 188 ~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~ 267 (394)
T PRK00411 188 ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGS 267 (394)
T ss_pred hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 211 1346789999999999999987632 1112222233334444333456777776654321 1 1 1
Q ss_pred --CChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcC-C-CCcccchHHHHHH--HHHcCCc
Q 039262 367 --RMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLY-P-EDYRISKENLIDC--WIGEGFL 440 (885)
Q Consensus 367 --~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f-p-~~~~i~~~~li~~--w~a~g~i 440 (885)
-+.+....+.+... .....-.+..||. +.|..+..++.. . ....+....+... .+++.+-
T Consensus 268 ~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 268 RKVTEEDVRKAYEKSE-------------IVHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred CCcCHHHHHHHHHHHH-------------HHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 24455555544331 1223456789998 555555444422 1 1123444444432 2222111
Q ss_pred cCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 441 NESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
.. .-......+|+.+|...+++...
T Consensus 334 ~~---~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YE---PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC---cCcHHHHHHHHHHHHhcCCeEEE
Confidence 00 11234567789999999998753
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.33 E-value=3.8e-14 Score=143.62 Aligned_cols=280 Identities=19% Similarity=0.248 Sum_probs=176.8
Q ss_pred CcccCCCCCCC-CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCC-CCccccc
Q 039262 526 QIDNLSGVPTC-PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSD-TNVAVLP 602 (885)
Q Consensus 526 ~~~~l~~~~~~-~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~-~~i~~Lp 602 (885)
.+.++|. ++ +.-..+.|..| .+..+|+..|+.+++||.||||+| .|+.+ |..|..|..|-.|-+.+ |+|+.+|
T Consensus 57 GL~eVP~--~LP~~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 57 GLTEVPA--NLPPETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CcccCcc--cCCCcceEEEeccC-CcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 4445543 22 35677889999 899999999999999999999999 78765 88899999988887766 8999999
Q ss_pred h-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccch--
Q 039262 603 K-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA-- 679 (885)
Q Consensus 603 ~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-- 679 (885)
+ .+++|..|+.|.+.-| .+..++.+.+..|++|..|.++++.+..-. -..+..+..++.+.+..|....
T Consensus 133 k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~-------~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSIC-------KGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred hhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhc-------cccccchhccchHhhhcCcccccc
Confidence 5 5899999999999888 678888888999999999999988765421 1134555566666655444110
Q ss_pred -hhhhhcc-------ccccccceeeEecCCCCCCcccccccccCCCcceE--ee-cccCccceEEecccccccCCCcccc
Q 039262 680 -LHCVLSS-------HRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRL--QI-VECYELEELKMDYTGVVQNRSQPFV 748 (885)
Q Consensus 680 -~~~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L--~l-~~~~~l~~l~~~~~~~~~~~~~~~~ 748 (885)
++-.... .....+.....+.+.. ...++...+. ..++++ .+ +.|......+..- ...
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~R-i~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~c---------f~~ 272 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKR-INQEDARKFL--CSLESLPSRLSSEDFPDSICPAKC---------FKK 272 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHH-hcccchhhhh--hhHHhHHHhhccccCcCCcChHHH---------Hhh
Confidence 0000000 0000011111111100 0000000000 111111 00 1110000001111 225
Q ss_pred cCcccEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccC-CCCC
Q 039262 749 FHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIY-WKPL 825 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~-~~~~ 825 (885)
+++|++|+|++ ++++.+. ++..+..|++|.|..+ .++.+.. ..+.++..|+.|+|.+ ++++.+. ..+.
T Consensus 273 L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~------~~f~~ls~L~tL~L~~-N~it~~~~~aF~ 343 (498)
T KOG4237|consen 273 LPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRN-KLEFVSS------GMFQGLSGLKTLSLYD-NQITTVAPGAFQ 343 (498)
T ss_pred cccceEeccCC-CccchhhhhhhcchhhhhhhhcCcc-hHHHHHH------HhhhccccceeeeecC-CeeEEEeccccc
Confidence 88999999998 5788774 6888999999999884 5666544 4678899999999998 4555543 3444
Q ss_pred CCCCcceEEEccC
Q 039262 826 PFPHLKEMKVIHC 838 (885)
Q Consensus 826 ~~p~L~~L~i~~c 838 (885)
...+|.+|.+-.+
T Consensus 344 ~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 344 TLFSLSTLNLLSN 356 (498)
T ss_pred ccceeeeeehccC
Confidence 5667777777543
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.21 E-value=8.2e-09 Score=113.81 Aligned_cols=296 Identities=14% Similarity=0.115 Sum_probs=170.2
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC---CEEEEEEEcCccCHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNF---DVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~~~ 227 (885)
+.++||++++++|...+.. ...+.+.|+|++|+|||++++.+++......... -..+|+.+....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4689999999999999864 3456899999999999999999998762111111 24677787777777889999
Q ss_pred HHHHcC---CCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh-c----ccccccC--CCCCCCCCcEEEEecC
Q 039262 228 IGEKIG---LVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV-D----LSKVGIP--LPGRLNNKSKVVFTTR 295 (885)
Q Consensus 228 i~~~l~---~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~----~~~~~~~--l~~~~~~gs~iivTtR 295 (885)
|++++. ...+ ....+..+....+.+.+. +++++||||+++... . +..+... .....+....+|.+|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 999883 2211 122234455555666654 567899999997541 1 1222111 1101112334455554
Q ss_pred ChhHhhhcc-------CcceEEeccCChhhHHHHHHHHhcC--CccCCCchhHHHHHHHHHHhCCchhHH-HHHHHHh--
Q 039262 296 SEEVCGLME-------AHKKFKVECLSHNDAWELFRQKVGG--ETLNCHPDILELAETVAKECGGLPLAL-ITIGRAM-- 363 (885)
Q Consensus 296 ~~~v~~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~GlPLai-~~~~~~l-- 363 (885)
.......+. ....+.+++++.+|..+++..++.. .....+++..+....++..+.|.|-.+ .++-...
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211111 1246889999999999999988741 111123333445566777778888544 2221111
Q ss_pred --cC---CCChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcC--CCCcccchHHHHHHH--
Q 039262 364 --SC---KRMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLY--PEDYRISKENLIDCW-- 434 (885)
Q Consensus 364 --~~---~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~f--p~~~~i~~~~li~~w-- 434 (885)
.. .-+.+..+.+.+.+. .....-++..||. +.+..+..++.. .++..+....+...+
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 123444444433321 1233456678888 666555544321 133445555555533
Q ss_pred HHcCCccCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 435 IGEGFLNESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 435 ~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
+++.+ .. ..-......+++..|...+++...
T Consensus 320 ~~~~~-~~--~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 320 VCEDI-GV--DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHhc-CC--CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12211 10 112346677888999999998764
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.19 E-value=3.5e-09 Score=111.32 Aligned_cols=182 Identities=13% Similarity=0.171 Sum_probs=113.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
.+.+++.|+|++|+||||+++.+++.. . .... ..+|+ +....+..+++..|+..++.... ..+.......+.+
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l-~-~~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~---~~~~~~~~~~l~~ 113 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRL-D-QERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE---GRDKAALLRELED 113 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhc-C-CCCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC---CCCHHHHHHHHHH
Confidence 456789999999999999999999987 2 1211 22333 33345677889999998876532 2222223333333
Q ss_pred H-----hccCcEEEEEccccchh--cccccccCCC--CCCCCCcEEEEecCChhHhhhcc----------CcceEEeccC
Q 039262 254 N-----LKEKKFVLLLDDIWERV--DLSKVGIPLP--GRLNNKSKVVFTTRSEEVCGLME----------AHKKFKVECL 314 (885)
Q Consensus 254 ~-----l~~k~~LlVlDdv~~~~--~~~~~~~~l~--~~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L 314 (885)
. ..+++.++|+||++... .++.+..... ........|++|.... ....+. ....+.++++
T Consensus 114 ~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 114 FLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred HHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCC
Confidence 2 25788999999997642 3444332111 0122233455555432 211111 1345789999
Q ss_pred ChhhHHHHHHHHhcCCccC-CCchhHHHHHHHHHHhCCchhHHHHHHHHh
Q 039262 315 SHNDAWELFRQKVGGETLN-CHPDILELAETVAKECGGLPLALITIGRAM 363 (885)
Q Consensus 315 ~~~e~~~Lf~~~~~~~~~~-~~~~l~~~~~~i~~~c~GlPLai~~~~~~l 363 (885)
+.+|..+++...+...... ...-..+..+.|++.++|.|..|..++..+
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999876432211 111225678999999999999998888766
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=1.8e-10 Score=118.53 Aligned_cols=196 Identities=19% Similarity=0.234 Sum_probs=103.9
Q ss_pred ccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHH--------
Q 039262 157 VVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAI-------- 228 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i-------- 228 (885)
|+||++++++|.+.+..+..+.+.|+|+.|+|||+|++.+.+.. . ...+ .++|+........ .....+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~-~-~~~~-~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINEL-K-EKGY-KVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHC-T---EE-CCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh-h-hcCC-cEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 79999999999999988778999999999999999999999986 1 1122 3444444333322 112222
Q ss_pred ------HHHcCCCCc-c---ccccchhHHHHHHHHHhc--cCcEEEEEccccchh-cc-------cccccCCCC-CCCCC
Q 039262 229 ------GEKIGLVND-T---WKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV-DL-------SKVGIPLPG-RLNNK 287 (885)
Q Consensus 229 ------~~~l~~~~~-~---~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-~~-------~~~~~~l~~-~~~~g 287 (885)
...+..... . ............+.+.+. +++++||+||+.... .. ..+...+.. .....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111111000 0 011122333444444444 356999999996544 11 111111110 11233
Q ss_pred cEEEEecCChhHhhh--------ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 288 SKVVFTTRSEEVCGL--------MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 288 s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
..+|+++.+..+... .+....+.+++|+.+++++++...+... ... +.-.+..++|...+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 445555555544322 1223458999999999999999976433 111 12245569999999999998864
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.10 E-value=4.8e-09 Score=117.99 Aligned_cols=291 Identities=16% Similarity=0.157 Sum_probs=185.6
Q ss_pred CcccchHHHHHHHHHHHccC-CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQE-PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l 232 (885)
...|-|. ++++.|... +.+.+.|..++|.|||||+.+..... ..-..+.|++.+.. .+.......++..+
T Consensus 19 ~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 19 DNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred ccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 3456665 455555553 78999999999999999999998733 33457999998764 56777778887777
Q ss_pred CCCCcc-----------ccccchhHHHHHHHHHhc--cCcEEEEEccccc---hhcccccccCCCCCCCCCcEEEEecCC
Q 039262 233 GLVNDT-----------WKNRRTEQKALDIFRNLK--EKKFVLLLDDIWE---RVDLSKVGIPLPGRLNNKSKVVFTTRS 296 (885)
Q Consensus 233 ~~~~~~-----------~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~iivTtR~ 296 (885)
+.-.+. ....+.......+...+. .++..+||||..- +.--..+...+. +...+-..|||||+
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~-~~P~~l~lvv~SR~ 169 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLK-HAPENLTLVVTSRS 169 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHH-hCCCCeEEEEEecc
Confidence 632211 112223334444444444 3689999999742 221122222223 55578899999998
Q ss_pred hhHhh---hccCcceEEe----ccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCCh
Q 039262 297 EEVCG---LMEAHKKFKV----ECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMP 369 (885)
Q Consensus 297 ~~v~~---~~~~~~~~~l----~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~ 369 (885)
..-.. .--....+++ =.|+.+|+-++|....+..- .+.-.+.+.+..+|-+-|+..++=.++.+.+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 74321 1111222333 24889999999988764322 13347899999999999999988777743333
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchhhh-HHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhH
Q 039262 370 EEWSYAIQVLRTSSSQFPGLGNEVYPL-LKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGV 448 (885)
Q Consensus 370 ~~w~~~~~~l~~~~~~~~~~~~~~~~~-l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~ 448 (885)
+.--.. +.+..+.+..- ..=-++.||+ .+|.+++-||+++.-. +.|+..- .-
T Consensus 244 ~q~~~~----------LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f~----~eL~~~L------------tg 296 (894)
T COG2909 244 EQSLRG----------LSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRFN----DELCNAL------------TG 296 (894)
T ss_pred HHHhhh----------ccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHhh----HHHHHHH------------hc
Confidence 222111 11111122222 2335778999 8999999999986421 1222221 12
Q ss_pred HHHHHHHHHHHHHccccccc---cCCeEEehHHHHHHHHHHH
Q 039262 449 QKEGYHIVGTLVHACLLEEV---EEDEVQMHDVIRDMALWLA 487 (885)
Q Consensus 449 ~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~~ 487 (885)
++.+...+++|.+++|+-.. ....|+.|.++.+|.+.-.
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 35577789999999998754 6789999999999987543
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.3e-10 Score=110.22 Aligned_cols=128 Identities=30% Similarity=0.339 Sum_probs=46.4
Q ss_pred cccccceeEEEeecCCcccCCCCC-CCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhH-hccccC
Q 039262 511 VRKWEKVRRLSLMENQIDNLSGVP-TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVI-SKLVSL 588 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L 588 (885)
..++.+.+.|++.+|.|..+.... .+.+|++|++++| .+..++. +..++.|+.|++++| .|+.+++.+ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCC-CCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcC
Confidence 334446778888888877776664 4678888888888 6766654 677888888888888 777776555 357888
Q ss_pred CEeecCCCCccccc--hhhhccCCCcEEecCCcccccccc---chhhcCCCCCcEEEeec
Q 039262 589 QHLDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIP---RRLISSFSSLHVLRMFG 643 (885)
Q Consensus 589 ~~L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~ 643 (885)
++|+|++|+|..+. ..+..+++|++|++.+|+.. ..+ .-++..+++|+.|+...
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEE
Confidence 88888888776654 34667778888888877532 222 12456677777776543
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.07 E-value=1.7e-09 Score=116.49 Aligned_cols=272 Identities=15% Similarity=0.154 Sum_probs=151.2
Q ss_pred CcccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
.+|+|+++.++.+...+.. ...+.+.|+|++|+||||+|+.+++.. . ..+ .++..+ .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l-~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM-G--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh-C--CCe---EEEecc-cccChHHHHHHH
Confidence 4699999999998877753 345688999999999999999999987 2 221 122221 111122233334
Q ss_pred HHcCCCC----ccccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhhcc-
Q 039262 230 EKIGLVN----DTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLME- 304 (885)
Q Consensus 230 ~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~- 304 (885)
..+.... ++....+ ......++..+.+.+..+|+|+..+...+. ..++ +.+-|..|||...+...+.
T Consensus 98 ~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~---~~l~----~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFRLDIMIGKGPAARSIR---LDLP----PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcceeeeeccCcccccee---ecCC----CceEEeecCCcccCCHHHHH
Confidence 4332211 0001111 112233455566666677777654332221 1122 2455666777554432221
Q ss_pred -CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhccC
Q 039262 305 -AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRTSS 383 (885)
Q Consensus 305 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 383 (885)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..+...+. .|... ...
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~----~~~- 235 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQV----KGD- 235 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHH----cCC-
Confidence 1346899999999999999998865443333 35689999999999965554444321 12110 000
Q ss_pred CCCC-CCCcchhhhHHhhhcCCChhhHHHHHH-HHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHH-HHH
Q 039262 384 SQFP-GLGNEVYPLLKFSYDNLPNETIRSCLL-YCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVG-TLV 460 (885)
Q Consensus 384 ~~~~-~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~ 460 (885)
.... ..-......+...+..|++ ..+..+. ....|+.+ .+..+.+.... | ...+.+++.++ .|+
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--------~~~~~~~~~~e~~Li 302 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--------EERDTIEDVYEPYLI 302 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------CCcchHHHHhhHHHH
Confidence 0000 0001233445566778887 5666664 66677655 45544442221 1 11234444455 788
Q ss_pred Hccccccc
Q 039262 461 HACLLEEV 468 (885)
Q Consensus 461 ~~sll~~~ 468 (885)
+.+|++..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 88888764
No 32
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.06 E-value=8e-09 Score=110.67 Aligned_cols=272 Identities=16% Similarity=0.157 Sum_probs=152.0
Q ss_pred cccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
+|+|+++.+++|..++.. .....+.++|++|+|||+||+.+++.. . ..+ ..+..+....... +...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~-~--~~~---~~~~~~~~~~~~~-l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM-G--VNL---KITSGPALEKPGD-LAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--CCE---EEeccchhcCchh-HHHHHH
Confidence 689999999999888863 345678999999999999999999987 2 222 1222211111122 222233
Q ss_pred HcCCCC----ccccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhhcc--
Q 039262 231 KIGLVN----DTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLME-- 304 (885)
Q Consensus 231 ~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~-- 304 (885)
.++... ++....+ ......++..+.+.+..+|+|+..+...+. ..++ +.+-|..||+...+...+.
T Consensus 78 ~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~---~~~~----~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR---LDLP----PFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee---ecCC----CeEEEEecCCccccCHHHHhh
Confidence 332211 1111111 122344666667777778887765544333 1222 3455666777654433211
Q ss_pred CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhccCC
Q 039262 305 AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRTSSS 384 (885)
Q Consensus 305 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~ 384 (885)
....+.+++++.++..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |.... ..+...-
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCc
Confidence 1346789999999999999998864332222 4457889999999997765444332 11100 0000000
Q ss_pred CCCCCCcchhhhHHhhhcCCChhhHHHHHH-HHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHH-HHHHc
Q 039262 385 QFPGLGNEVYPLLKFSYDNLPNETIRSCLL-YCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVG-TLVHA 462 (885)
Q Consensus 385 ~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~-~L~~~ 462 (885)
. ...-......+...|..++. +.+..+. ..+.++.+ .+..+.+.... | .....+...++ .|+++
T Consensus 218 t-~~~v~~~l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~l---g--------~~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 218 N-RDIALKALEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAAL---G--------EDADTIEDVYEPYLLQI 283 (305)
T ss_pred C-HHHHHHHHHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHHh---C--------CCcchHHHhhhHHHHHc
Confidence 0 00001122224556788888 6666665 55666543 34433332211 1 12345556677 69999
Q ss_pred cccccc
Q 039262 463 CLLEEV 468 (885)
Q Consensus 463 sll~~~ 468 (885)
+|++..
T Consensus 284 ~li~~~ 289 (305)
T TIGR00635 284 GFLQRT 289 (305)
T ss_pred CCcccC
Confidence 999765
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.99 E-value=3.4e-10 Score=107.42 Aligned_cols=139 Identities=27% Similarity=0.329 Sum_probs=52.0
Q ss_pred cCCcccCCCCCCCCCceeeeccCCccccccCchhhc-CCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccc
Q 039262 524 ENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQ-CMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLP 602 (885)
Q Consensus 524 ~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~-~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp 602 (885)
.+.|+..+...++.++|.|+|.+| .+..+.. +. .+.+|++|+|++| .|+.++ .+..+++|++|++++|.|+.++
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n-~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGN-QISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp -------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-C
T ss_pred cccccccccccccccccccccccc-ccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccc
Confidence 345566666677788999999999 6766643 44 6889999999999 899887 6888999999999999999998
Q ss_pred hhh-hccCCCcEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEE
Q 039262 603 KEL-NALVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSL 672 (885)
Q Consensus 603 ~~l-~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 672 (885)
..+ ..+++|++|++++| .+..+.. ..++.+++|++|++.+|.+....+ ....-+..+++|+.||-
T Consensus 81 ~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~----YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVCEKKN----YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT----HHHHHHHH-TT-SEETT
T ss_pred cchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcccchhh----HHHHHHHHcChhheeCC
Confidence 666 46899999999998 4444432 226788999999999887764321 12333556777777764
No 34
>PF05729 NACHT: NACHT domain
Probab=98.99 E-value=3.4e-09 Score=102.49 Aligned_cols=142 Identities=18% Similarity=0.238 Sum_probs=90.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCC----CCEEEEEEEcCccCHH---HHHHHHHHHcCCCCccccccchhHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTN----FDVVIWVVVSKDLRLE---NIQEAIGEKIGLVNDTWKNRRTEQKAL 249 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~ 249 (885)
|++.|+|.+|+||||+++.++..... ... +...+|++........ .+...|........ .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~~~--- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-----APIEE--- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-----hhhHH---
Confidence 58999999999999999999988732 222 4567777776544332 34444444433211 11111
Q ss_pred HHHHH-hccCcEEEEEccccchhc---------ccc-cccCCCCCCCCCcEEEEecCChhH---hhhccCcceEEeccCC
Q 039262 250 DIFRN-LKEKKFVLLLDDIWERVD---------LSK-VGIPLPGRLNNKSKVVFTTRSEEV---CGLMEAHKKFKVECLS 315 (885)
Q Consensus 250 ~l~~~-l~~k~~LlVlDdv~~~~~---------~~~-~~~~l~~~~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~ 315 (885)
.+... -..++++||+|++++... +.. +...++.....++++|||+|.... .........+.+.+|+
T Consensus 72 ~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 72 LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFS 151 (166)
T ss_pred HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCC
Confidence 12222 246899999999965432 111 222233123568999999998766 3333445679999999
Q ss_pred hhhHHHHHHHHh
Q 039262 316 HNDAWELFRQKV 327 (885)
Q Consensus 316 ~~e~~~Lf~~~~ 327 (885)
+++..+++.+.+
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.98 E-value=7.4e-11 Score=127.81 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=16.4
Q ss_pred cCcccEEEeccCCCCCCC--Ccc-C----CCCCcceEeEecc
Q 039262 749 FHSLRKIQIDDCNKLKDL--TFL-A----FAPNLKSIEVNSC 783 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l--~~l-~----~l~~L~~L~L~~~ 783 (885)
+++|+.|++++| .+.+. ..+ . ..+.|++|++++|
T Consensus 220 ~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 220 LKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred cCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 456666666664 23321 011 0 1356666666665
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=2.1e-10 Score=124.22 Aligned_cols=93 Identities=18% Similarity=0.105 Sum_probs=49.1
Q ss_pred cccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCC-----C-CccCCCCCcceEeEecccc
Q 039262 712 LADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKD-----L-TFLAFAPNLKSIEVNSCHG 785 (885)
Q Consensus 712 l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l-~~l~~l~~L~~L~L~~~~~ 785 (885)
+..+++|++|++++|.... ....... ... ....++|++|++.+| .+++ + ..+..+++|++|++++|.
T Consensus 217 ~~~~~~L~~L~ls~n~l~~-~~~~~l~---~~~-~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~- 289 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTD-AGAAALA---SAL-LSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNK- 289 (319)
T ss_pred hcccCCCCEEecCCCcCch-HHHHHHH---HHH-hccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCC-
Confidence 4567889999998874321 1111100 000 002478999999987 4432 1 124456889999998864
Q ss_pred ccccccccccccccCccC-CccceeecCC
Q 039262 786 IQEIVSDVPEVMRNLNLF-AKLQYLGLSS 813 (885)
Q Consensus 786 l~~i~~~~~~~~~~~~~~-p~L~~L~L~~ 813 (885)
+.+-+.. ........+ +.|+.|++.+
T Consensus 290 l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 290 FGEEGAQ--LLAESLLEPGNELESLWVKD 316 (319)
T ss_pred CcHHHHH--HHHHHHhhcCCchhhcccCC
Confidence 3321110 001133444 5666666655
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.91 E-value=2.4e-08 Score=119.39 Aligned_cols=307 Identities=16% Similarity=0.204 Sum_probs=176.0
Q ss_pred ccchHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC---HHHHHHHHHH
Q 039262 157 VVGLQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR---LENIQEAIGE 230 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~---~~~~~~~i~~ 230 (885)
++||+.+++.|...+.+ ....++.+.|..|||||+|+++|.....+.++.|-...+-....+.. ..+..++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 68999999999998865 45679999999999999999999998743322221111111222221 2233344444
Q ss_pred Hc-------------------CCCCcc--------------------ccccchhHH-----HHHHHHHh-ccCcEEEEEc
Q 039262 231 KI-------------------GLVNDT--------------------WKNRRTEQK-----ALDIFRNL-KEKKFVLLLD 265 (885)
Q Consensus 231 ~l-------------------~~~~~~--------------------~~~~~~~~~-----~~~l~~~l-~~k~~LlVlD 265 (885)
++ +..... ......... ...+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 111000 000000111 11122222 3469999999
Q ss_pred cc-cchhc-ccccccCCCC-----CCCCCcEEEEecCCh--hHhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCc
Q 039262 266 DI-WERVD-LSKVGIPLPG-----RLNNKSKVVFTTRSE--EVCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHP 336 (885)
Q Consensus 266 dv-~~~~~-~~~~~~~l~~-----~~~~gs~iivTtR~~--~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~ 336 (885)
|+ |-+.. ++-+...... ...+..-.+.|.+.. .+.........+.|.||+..+.-.+.....+.....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--- 238 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL--- 238 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc---
Confidence 99 64432 2211111110 000111122233322 222233345689999999999999999988764322
Q ss_pred hhHHHHHHHHHHhCCchhHHHHHHHHhcCC------CChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHH
Q 039262 337 DILELAETVAKECGGLPLALITIGRAMSCK------RMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIR 410 (885)
Q Consensus 337 ~l~~~~~~i~~~c~GlPLai~~~~~~l~~~------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k 410 (885)
..+..+.|+++.+|+|+.+..+-..+... .+...|..-...+.. ++..+.+...+..-.+.||. ..|
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-----~~~~~~vv~~l~~rl~kL~~-~t~ 311 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-----LATTDAVVEFLAARLQKLPG-TTR 311 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-----chhhHHHHHHHHHHHhcCCH-HHH
Confidence 24468999999999999998888777653 344555543222211 11223466678889999999 899
Q ss_pred HHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHHHHHHccccccc-------cCC---eEEehHHHH
Q 039262 411 SCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVGTLVHACLLEEV-------EED---EVQMHDVIR 480 (885)
Q Consensus 411 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~-------~~~---~~~mHdlv~ 480 (885)
..+-..|++...+ +.+.|-..+-. ....++...++.|....++-.. ... +-..||.++
T Consensus 312 ~Vl~~AA~iG~~F--~l~~La~l~~~----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vq 379 (849)
T COG3899 312 EVLKAAACIGNRF--DLDTLAALAED----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQ 379 (849)
T ss_pred HHHHHHHHhCccC--CHHHHHHHHhh----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHH
Confidence 9999999987554 45555444421 2234455555555555554321 122 226788888
Q ss_pred HHHHH
Q 039262 481 DMALW 485 (885)
Q Consensus 481 d~a~~ 485 (885)
+.|-.
T Consensus 380 qaaY~ 384 (849)
T COG3899 380 QAAYN 384 (849)
T ss_pred HHHhc
Confidence 87744
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=2.4e-08 Score=101.23 Aligned_cols=153 Identities=13% Similarity=0.177 Sum_probs=95.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
..+.+.|+|.+|+|||+|++.+++... .....+.|+++.... .... .+.+.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~---~~~~~~~y~~~~~~~---~~~~-----------------------~~~~~ 88 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYL---LNQRTAIYIPLSKSQ---YFSP-----------------------AVLEN 88 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEeeHHHhh---hhhH-----------------------HHHhh
Confidence 446789999999999999999999862 223345677653210 0000 11111
Q ss_pred hccCcEEEEEccccch---hcccc-cccCCCCCCCCCcEEEE-ecCC---------hhHhhhccCcceEEeccCChhhHH
Q 039262 255 LKEKKFVLLLDDIWER---VDLSK-VGIPLPGRLNNKSKVVF-TTRS---------EEVCGLMEAHKKFKVECLSHNDAW 320 (885)
Q Consensus 255 l~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~e~~ 320 (885)
+. +.-+||+||+|.. ..|+. +...+......|..+|| |++. +++...+.....++++++++++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 2348999999863 33442 22222211123555654 4443 355555556678999999999999
Q ss_pred HHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 321 ELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 321 ~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
+++.+.+.......+ ++...-|++.+.|..-.+..+-
T Consensus 168 ~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 168 IVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 999998864433333 4568889999988776664443
No 39
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=5.9e-07 Score=102.27 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=120.5
Q ss_pred CCcccchHHHHHHHHHHHcc----C-CCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCCC--EEEEEEEcCccCHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQ----E-PAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNFD--VVIWVVVSKDLRLENI 224 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~--~~~wv~~s~~~~~~~~ 224 (885)
++.+.|||+++++|...|.. . ...++.|+|.+|+|||++++.|.+..... ..... .+++|.+..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 34688999999999988864 2 33578899999999999999998776211 11222 3677777776778888
Q ss_pred HHHHHHHcCCCCccccccchhHHHHHHHHHhc---cCcEEEEEccccchh--cccccccCCCCCCCCCcEEEE--ecCCh
Q 039262 225 QEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK---EKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVF--TTRSE 297 (885)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv--TtR~~ 297 (885)
+..|+.++....+. ......+....+...+. +...+||||+|+.-. .-+.+...+......+++|+| +|.+.
T Consensus 834 YqvI~qqL~g~~P~-~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 834 YQVLYKQLFNKKPP-NALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHcCCCCC-ccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999888433221 22233344455555442 234589999996421 111111111101123455544 34322
Q ss_pred h--------HhhhccCcceEEeccCChhhHHHHHHHHhcCCc-cCCCchhHHHHHHHHHHhCCchhHHHHHHHHh
Q 039262 298 E--------VCGLMEAHKKFKVECLSHNDAWELFRQKVGGET-LNCHPDILELAETVAKECGGLPLALITIGRAM 363 (885)
Q Consensus 298 ~--------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l 363 (885)
+ +...+. ...+...|++.++..+++..++.... .-.+..++-+|+.++...|-.-.||.++-...
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2 222221 23467799999999999999885422 12222333344444444444555665544333
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.3e-10 Score=121.94 Aligned_cols=192 Identities=22% Similarity=0.247 Sum_probs=139.0
Q ss_pred ceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
.....+++.|.+.++|. ...|..|..+.+..| .+..+|.. ++++..|.+|||+.| .+..+|..++.|+ |+.|-++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEe
Confidence 44556677777777765 456778888888887 67777776 788899999999999 8888998888765 8899999
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
+|+++.+|..++.+..|.+||.+.| .+..+|.. ++.+.+|+.|.+..|.+.. .+.++..|+ |..|++++
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l~~--------lp~El~~Lp-Li~lDfSc 220 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHLED--------LPEELCSLP-LIRLDFSC 220 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhhhh--------CCHHHhCCc-eeeeeccc
Confidence 9999999988988888999999888 56778876 7888899988888877654 466777664 77888888
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCccccc--ccccCCCcceEeeccc
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVS--ALADLKHLKRLQIVEC 726 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~ 726 (885)
|++..++.-... ++.|+.|.|.+++ +.+-+.. .-+...=.|+|++..|
T Consensus 221 Nkis~iPv~fr~---m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 221 NKISYLPVDFRK---MRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Cceeecchhhhh---hhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 887766543222 3567777777643 2222211 1112233456666555
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.75 E-value=7.1e-07 Score=92.60 Aligned_cols=210 Identities=19% Similarity=0.194 Sum_probs=121.7
Q ss_pred HHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhH
Q 039262 167 VWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQ 246 (885)
Q Consensus 167 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 246 (885)
|...+..+.+....+||++|+||||||+.+.... ...| ..++...+-.+-++.+++...
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f-----~~~sAv~~gvkdlr~i~e~a~------------- 97 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAF-----EALSAVTSGVKDLREIIEEAR------------- 97 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCce-----EEeccccccHHHHHHHHHHHH-------------
Confidence 4445556788889999999999999999999986 3443 344444333333333333221
Q ss_pred HHHHHHHHhccCcEEEEEcccc--chhcccccccCCCCCCCCCcEEEE--ecCChhH---hhhccCcceEEeccCChhhH
Q 039262 247 KALDIFRNLKEKKFVLLLDDIW--ERVDLSKVGIPLPGRLNNKSKVVF--TTRSEEV---CGLMEAHKKFKVECLSHNDA 319 (885)
Q Consensus 247 ~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~e~ 319 (885)
.....+++.+|.+|.|. +..+.+.+ +| .-..|.-|+| ||-|+.. ........++.+++|+.+|-
T Consensus 98 -----~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp-~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di 168 (436)
T COG2256 98 -----KNRLLGRRTILFLDEIHRFNKAQQDAL---LP-HVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDI 168 (436)
T ss_pred -----HHHhcCCceEEEEehhhhcChhhhhhh---hh-hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHH
Confidence 12234889999999995 33444433 34 4456777777 7777643 22234567899999999999
Q ss_pred HHHHHHHhcCCccCC---Cchh-HHHHHHHHHHhCCchhHHHHH---HHHhcCCCChHHHHHHHHHHhccCCCCC---CC
Q 039262 320 WELFRQKVGGETLNC---HPDI-LELAETVAKECGGLPLALITI---GRAMSCKRMPEEWSYAIQVLRTSSSQFP---GL 389 (885)
Q Consensus 320 ~~Lf~~~~~~~~~~~---~~~l-~~~~~~i~~~c~GlPLai~~~---~~~l~~~~~~~~w~~~~~~l~~~~~~~~---~~ 389 (885)
..++.+.+......- ...+ ++....++..++|---+.-.. +..+........-+.+.+.++......+ +.
T Consensus 169 ~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~ 248 (436)
T COG2256 169 KKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDA 248 (436)
T ss_pred HHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcch
Confidence 999999553221111 1112 446788899999876544222 2222222111112222222222211111 11
Q ss_pred CcchhhhHHhhhcCCCh
Q 039262 390 GNEVYPLLKFSYDNLPN 406 (885)
Q Consensus 390 ~~~~~~~l~~sy~~L~~ 406 (885)
.-++.+++..|...-++
T Consensus 249 hYdliSA~hKSvRGSD~ 265 (436)
T COG2256 249 HYDLISALHKSVRGSDP 265 (436)
T ss_pred HHHHHHHHHHhhccCCc
Confidence 12567777777777766
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.70 E-value=1.2e-06 Score=97.46 Aligned_cols=175 Identities=17% Similarity=0.171 Sum_probs=107.1
Q ss_pred CcccchHHHHHH---HHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 155 ATVVGLQSQLER---VWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
++++|.+..+.. +...+.......+.++|++|+||||+|+.+++.. ... |+.++.......-.+.+.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~-----~~~l~a~~~~~~~ir~ii~~ 83 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT---DAP-----FEALSAVTSGVKDLREVIEE 83 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----EEEEecccccHHHHHHHHHH
Confidence 358999888766 7888877777889999999999999999999886 222 23332221111111222221
Q ss_pred cCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE--ecCChhH---hhhc
Q 039262 232 IGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF--TTRSEEV---CGLM 303 (885)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~ 303 (885)
. .. ...+++.+|++|+++.. ...+.+...+. .|..++| ||.+... ....
T Consensus 84 ~-------------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~ 140 (413)
T PRK13342 84 A-------------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALL 140 (413)
T ss_pred H-------------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHh
Confidence 1 11 12457889999999753 23344433333 2444444 4454321 1122
Q ss_pred cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
.....+.+.+++.++.+.++.+.+.........-..+..+.|++.|+|.+..+..+.
T Consensus 141 SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 141 SRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred ccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 234678999999999999999876431100001124567889999999997764443
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=1.5e-07 Score=96.01 Aligned_cols=168 Identities=13% Similarity=0.112 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc
Q 039262 160 LQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW 239 (885)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~ 239 (885)
.+..++.+.+++.....+.|.|+|..|+|||+||+.+++... ......++++++.-.. ..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~---~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE---ERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH---hcCCcEEEEeHHHHHH------hH-----------
Confidence 455677777776666778999999999999999999998862 2233456665443211 00
Q ss_pred cccchhHHHHHHHHHhccCcEEEEEccccchh---cc-cccccCCCCCCCCCcEEEEecCChh---------HhhhccCc
Q 039262 240 KNRRTEQKALDIFRNLKEKKFVLLLDDIWERV---DL-SKVGIPLPGRLNNKSKVVFTTRSEE---------VCGLMEAH 306 (885)
Q Consensus 240 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~ 306 (885)
..+...+.+ .-+||+||++... .| +.+...+......+.++|+||+... +...+...
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 011111222 2389999996432 22 2232222111123457888887532 22222234
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
..+++.++++++...++...+.......+ .+..+.+++.+.|.|..+..+.
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 57899999999999999876532222222 3456888888999998775554
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.1e-09 Score=112.78 Aligned_cols=284 Identities=15% Similarity=0.171 Sum_probs=154.1
Q ss_pred ceeEEEeecCCcccCCC----CCCCCCceeeeccCCccccccC-chhhcCCCcccEEEecCCCccccC--chhHhccccC
Q 039262 516 KVRRLSLMENQIDNLSG----VPTCPYLLTLFLNNNKQLLIMD-RGFFQCMPRLKVLNLSGAKQLFYF--PLVISKLVSL 588 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~Ls~~~~i~~l--p~~i~~L~~L 588 (885)
.++.|++.++.-..... ...|+++..|.+.+|..++... .++-..++.|++|+|..|..++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 45667776654332222 2577888888888875444332 233467888888888887566542 2234457788
Q ss_pred CEeecCCC-Cccc--cchhhhccCCCcEEecCCccccccccchhhc----CCCCCcEEEeecccccCCCCcccccchhhh
Q 039262 589 QHLDLSDT-NVAV--LPKELNALVNLKCLNLENAWMLTVIPRRLIS----SFSSLHVLRMFGIGYSSSDGIIREGELEEL 661 (885)
Q Consensus 589 ~~L~L~~~-~i~~--Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~----~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 661 (885)
.||++++| .|.. +..-...+.+|+.+.+.||. ..+...+. ...-+-.+++..|...++
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~---e~~le~l~~~~~~~~~i~~lnl~~c~~lTD------------ 283 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL---ELELEALLKAAAYCLEILKLNLQHCNQLTD------------ 283 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccc---cccHHHHHHHhccChHhhccchhhhccccc------------
Confidence 88888877 3332 22223344555566555652 22222111 111122222222211111
Q ss_pred cCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCccccccc-ccCCCcceEeecccCccceEEecccccc
Q 039262 662 LGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSAL-ADLKHLKRLQIVECYELEELKMDYTGVV 740 (885)
Q Consensus 662 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 740 (885)
..+......+..++.|...++...+......+ .++++|+.|.+.+|..+........+.
T Consensus 284 -------------------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r- 343 (483)
T KOG4341|consen 284 -------------------EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR- 343 (483)
T ss_pred -------------------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc-
Confidence 11111112234556666666655554443333 346788888888887655433333321
Q ss_pred cCCCcccccCcccEEEeccCCCCCCC--Cc-cCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccc
Q 039262 741 QNRSQPFVFHSLRKIQIDDCNKLKDL--TF-LAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNF 817 (885)
Q Consensus 741 ~~~~~~~~~~~L~~L~L~~c~~l~~l--~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l 817 (885)
..+.|+.+++.+|....+- -. -.++|.|+.|.|++|..+++-... .......+...|+.|.|++||.+
T Consensus 344 -------n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~--~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 344 -------NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR--HLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred -------CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh--hhhhccccccccceeeecCCCCc
Confidence 4677888888887544433 11 235678888888888777664211 01123355667788888888876
Q ss_pred cccCCC-CCCCCCcceEEEccCCCCCC
Q 039262 818 QSIYWK-PLPFPHLKEMKVIHCNKLKK 843 (885)
Q Consensus 818 ~~i~~~-~~~~p~L~~L~i~~c~~L~~ 843 (885)
++-... ...+++|+.+++.+|....+
T Consensus 415 ~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hHHHHHHHhhCcccceeeeechhhhhh
Confidence 654332 23467888888877766554
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.1e-09 Score=112.65 Aligned_cols=281 Identities=19% Similarity=0.209 Sum_probs=164.7
Q ss_pred CCceeeeccCCccccccC-chhhcCCCcccEEEecCCCccccC--chhHhccccCCEeecCCC-Cccccc--hhhhccCC
Q 039262 537 PYLLTLFLNNNKQLLIMD-RGFFQCMPRLKVLNLSGAKQLFYF--PLVISKLVSLQHLDLSDT-NVAVLP--KELNALVN 610 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~Ls~~~~i~~l--p~~i~~L~~L~~L~L~~~-~i~~Lp--~~l~~L~~ 610 (885)
..||.|.+.|+.....-+ ..+...++++..|++.+|..++.- -+.-..+.+|++|+|..| .|+..- .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 457888888874332222 234567788888888888544431 111234667777777664 443322 12334566
Q ss_pred CcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhcccccc
Q 039262 611 LKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLR 690 (885)
Q Consensus 611 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 690 (885)
|++|+++.|..+.. .+++ .-..++++++.+...++.....+.+.......
T Consensus 218 L~~lNlSwc~qi~~---------~gv~---------------------~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG---------NGVQ---------------------ALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred HHHhhhccCchhhc---------Ccch---------------------HHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 77777766643222 0000 00122233333333333333333333333333
Q ss_pred ccceeeEecCCCCCCccccccc-ccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--
Q 039262 691 SCTQALYLKDFKSSKSLDVSAL-ADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-- 767 (885)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-- 767 (885)
..+.++++..|..++..+...+ ..+..|+.|..++|...........+ ...++|+.|.+++|..+++.-
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft 339 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFT 339 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhh
Confidence 4455666667766665553222 34678999999998776543333332 257899999999998877653
Q ss_pred ccC-CCCCcceEeEeccccccccccccccccccCccCCccceeecCCccccccc-----CCCCCCCCCcceEEEccCCCC
Q 039262 768 FLA-FAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSI-----YWKPLPFPHLKEMKVIHCNKL 841 (885)
Q Consensus 768 ~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i-----~~~~~~~p~L~~L~i~~c~~L 841 (885)
.++ ..+.|+.|++..|..+.+- .......++|.|+.|.+++|...+.- .....++..|+.+++.+||.+
T Consensus 340 ~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 340 MLGRNCPHLERLDLEECGLITDG-----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhcCChhhhhhcccccceehhh-----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 333 5789999999998766553 11134567899999999999877654 223456788999999999988
Q ss_pred CCCCCCCC---ccccceEEEec
Q 039262 842 KKLPLDSN---SAKERKIVIRG 860 (885)
Q Consensus 842 ~~lp~~~~---~~~~~l~~i~~ 860 (885)
+.--+... ..++.+..+++
T Consensus 415 ~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 415 TDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred hHHHHHHHhhCcccceeeeech
Confidence 76333222 23444444444
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=4.3e-09 Score=103.39 Aligned_cols=126 Identities=25% Similarity=0.396 Sum_probs=56.8
Q ss_pred ccceeEEEeecCCcccCCCC-CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 514 WEKVRRLSLMENQIDNLSGV-PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
|..+..+++++|.|..+... .-.|.+|.|++++| .+..+.. +..+.+|..||||+| .+.++-..=.+|-|.+.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 34445555555555444332 22345555555555 3333332 444555555555555 4444333333444455555
Q ss_pred cCCCCccccchhhhccCCCcEEecCCccccccccc-hhhcCCCCCcEEEeeccc
Q 039262 593 LSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIG 645 (885)
Q Consensus 593 L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 645 (885)
|++|.|+.|. ++++|.+|..||+++| .++.+.. ..|++|+.|++|.+.+|.
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 5555554443 3445555555555555 2233221 114444444444444443
No 47
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.1e-09 Score=107.52 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=115.5
Q ss_pred CCCCCceeeeccCCccccccCc-hhhcCCCcccEEEecCCCccc---cCchhHhccccCCEeecCCCCccccchh--hhc
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDR-GFFQCMPRLKVLNLSGAKQLF---YFPLVISKLVSLQHLDLSDTNVAVLPKE--LNA 607 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~-~~~~~l~~Lr~L~Ls~~~~i~---~lp~~i~~L~~L~~L~L~~~~i~~Lp~~--l~~ 607 (885)
.++++||...|.++ .+...+. ...+.|++++.||||+| -+. .+.+-...|++|+.|+|+.|++.....+ -..
T Consensus 118 sn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 118 SNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred hhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 57788899988887 4443332 35678899999999988 443 3445567789999999999877554432 335
Q ss_pred cCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccc
Q 039262 608 LVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSH 687 (885)
Q Consensus 608 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 687 (885)
++.|+.|.|++|.....--......+++|+.|++..|.... .....-.-++.|+.|+++.|+...++..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-------~~~~~~~i~~~L~~LdLs~N~li~~~~~---- 264 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-------IKATSTKILQTLQELDLSNNNLIDFDQG---- 264 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-------eecchhhhhhHHhhccccCCcccccccc----
Confidence 67888888888842211111123467778888777763111 0111123345566666665554333221
Q ss_pred cccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceE-EecccccccCCCcccccCcccEEEeccCCCCCCC
Q 039262 688 RLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEEL-KMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDL 766 (885)
Q Consensus 688 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l 766 (885)
.....++.|..|.++.|. +.++ .++... ......|++|++|.+... ++.++
T Consensus 265 ----------------------~~~~~l~~L~~Lnls~tg-i~si~~~d~~s----~~kt~~f~kL~~L~i~~N-~I~~w 316 (505)
T KOG3207|consen 265 ----------------------YKVGTLPGLNQLNLSSTG-IASIAEPDVES----LDKTHTFPKLEYLNISEN-NIRDW 316 (505)
T ss_pred ----------------------cccccccchhhhhccccC-cchhcCCCccc----hhhhcccccceeeecccC-ccccc
Confidence 233344555555555542 2221 111100 000124677777777763 44444
Q ss_pred Cc---cCCCCCcceEeEec
Q 039262 767 TF---LAFAPNLKSIEVNS 782 (885)
Q Consensus 767 ~~---l~~l~~L~~L~L~~ 782 (885)
+. +..+++|+.|.+..
T Consensus 317 ~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 317 RSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cccchhhccchhhhhhccc
Confidence 43 34456666666543
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=2.3e-06 Score=97.14 Aligned_cols=241 Identities=18% Similarity=0.228 Sum_probs=137.3
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.+++|.++.++++.+++.. ...+.+.|+|++|+||||+|+.+++.. . |+ ++-+++++...... ...++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-~----~~-~ielnasd~r~~~~-i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-G----WE-VIELNASDQRTADV-IERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-C----CC-EEEEcccccccHHH-HHHHHH
Confidence 4689999999999998864 226789999999999999999999987 1 33 33344444333222 222222
Q ss_pred HcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh------cccccccCCCCCCCCCcEEEEecCChh-Hh--h
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV------DLSKVGIPLPGRLNNKSKVVFTTRSEE-VC--G 301 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR~~~-v~--~ 301 (885)
...... .....++-+||+|+++... .+..+...+. ..+..||+|+.+.. .. .
T Consensus 87 ~~~~~~----------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 87 EAATSG----------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HhhccC----------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhh
Confidence 221100 0011367799999997532 1333333332 22344666664321 11 1
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCC---ChHHHHHHHHH
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKR---MPEEWSYAIQV 378 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~---~~~~w~~~~~~ 378 (885)
.-.....+.+.+++.++....+.+.+.......+ .+....|++.++|..-.+......+.... +.+.-..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~---- 220 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKT---- 220 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHH----
Confidence 1123467899999999999999887754433333 45689999999997766644333343321 2222211
Q ss_pred HhccCCCCCCCCcchhhhHHhhhc-CCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccC
Q 039262 379 LRTSSSQFPGLGNEVYPLLKFSYD-NLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNE 442 (885)
Q Consensus 379 l~~~~~~~~~~~~~~~~~l~~sy~-~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 442 (885)
+.. .....+++.++..-+. .-+. .....+..+ .++. ..+-.|+.+.+...
T Consensus 221 ~~~-----~d~~~~if~~l~~i~~~k~~~-~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 221 LGR-----RDREESIFDALDAVFKARNAD-QALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred hhc-----CCCCCCHHHHHHHHHCCCCHH-HHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 111 1122466777766554 2222 333322221 1222 34678999988765
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.62 E-value=5e-09 Score=111.91 Aligned_cols=126 Identities=24% Similarity=0.332 Sum_probs=60.3
Q ss_pred cceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 515 EKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
..+..+++..|.+..+|.-.-.--|++|.+++| .++.+|.. ++...+|..||.+.| .+..+|..++++..|+.|+++
T Consensus 121 ~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 121 EALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hHHHHhhhccchhhcCChhhhcCcceeEEEecC-ccccCCcc-cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh
Confidence 344444455454444443222223455555555 44444444 334455555555555 455555555555555555555
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
.|++..+|..++. -.|..||++.| ++..+|-. +.+|+.|++|-+..|..
T Consensus 198 Rn~l~~lp~El~~-LpLi~lDfScN-kis~iPv~-fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 198 RNHLEDLPEELCS-LPLIRLDFSCN-KISYLPVD-FRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhCCHHHhC-CceeeeecccC-ceeecchh-hhhhhhheeeeeccCCC
Confidence 5555555554442 23455555544 44455543 44555555555544443
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=2.6e-06 Score=96.79 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=111.8
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
++++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+... -...++. ..++. -...+.|...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn-Ce~~~~~---~PCG~----C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN-CETGVTS---QPCGV----CRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CccCCCC---CCCcc----cHHHHHHhcCCC
Confidence 3689999999999999987664 4568999999999999999988761 1111100 00000 011111111000
Q ss_pred CCC---ccccccchhHHHHHHHHH----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hh-hh
Q 039262 234 LVN---DTWKNRRTEQKALDIFRN----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VC-GL 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~~ 302 (885)
... +.......++....+... ..++.-++|||++... ..+..+...+. ......++|+||++.. +. ..
T Consensus 88 ~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchh
Confidence 000 000011111111111111 1244558899999654 33555555554 3345677777776643 32 22
Q ss_pred ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch-hHHHHHHH
Q 039262 303 MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP-LALITIGR 361 (885)
Q Consensus 303 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-Lai~~~~~ 361 (885)
......|++++++.++..+.+.+.+..+....+ .+..+.|++.++|.. -|+..+-.
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 233567999999999999999988755442222 456789999999865 45554433
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.3e-08 Score=105.54 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=108.3
Q ss_pred cccceeEEEeecCCcccCC---CCCCCCCceeeeccCCcccccc--CchhhcCCCcccEEEecCCCccccCchh--Hhcc
Q 039262 513 KWEKVRRLSLMENQIDNLS---GVPTCPYLLTLFLNNNKQLLIM--DRGFFQCMPRLKVLNLSGAKQLFYFPLV--ISKL 585 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~---~~~~~~~Lr~L~l~~~~~l~~~--~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~--i~~L 585 (885)
+++++|.+++.++.+...+ ....|+++|.|+|+.| .+..+ -..+...+++|+.|+|+.| .+...-++ -..+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhh
Confidence 3457888888877766554 3478899999999998 44333 2345788999999999998 44332211 2357
Q ss_pred ccCCEeecCCCCcc--ccchhhhccCCCcEEecCCccccc--cccchhhcCCCCCcEEEeecccccCCCCcccccchhhh
Q 039262 586 VSLQHLDLSDTNVA--VLPKELNALVNLKCLNLENAWMLT--VIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEEL 661 (885)
Q Consensus 586 ~~L~~L~L~~~~i~--~Lp~~l~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 661 (885)
.+|+.|.|++|.+. .+-..+..+++|..|++..|..+. ..+ ...+..|+.|++.+|.+.... .....
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~---~~i~~~L~~LdLs~N~li~~~------~~~~~ 267 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS---TKILQTLQELDLSNNNLIDFD------QGYKV 267 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---hhhhhHHhhccccCCcccccc------ccccc
Confidence 89999999999774 333445677899999999884222 122 345678889999988766543 33456
Q ss_pred cCCCCccEEEEEecccchh
Q 039262 662 LGLKYLEVLSLTLNNSRAL 680 (885)
Q Consensus 662 ~~L~~L~~L~l~~~~~~~~ 680 (885)
+.++.|+.|.++.+.+.++
T Consensus 268 ~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccccchhhhhccccCcchh
Confidence 7778888888877766544
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.6e-06 Score=92.78 Aligned_cols=176 Identities=14% Similarity=0.179 Sum_probs=116.1
Q ss_pred cccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhc---CCCCCCCEEEEEEE-cCccCHHHHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFL---GSPTNFDVVIWVVV-SKDLRLENIQEAIGE 230 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~ 230 (885)
+++|-+..++.+.+.+..+.. +...++|+.|+||||+|+.+++... ....|+|...|... +....+++ .+++.+
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 578999999999999987655 5678999999999999999998641 12456776666542 22233333 233333
Q ss_pred HcCCCCccccccchhHHHHHHHHHhccCcEEEEEccc--cchhcccccccCCCCCCCCCcEEEEecCChhHh--hhccCc
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDI--WERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC--GLMEAH 306 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv--~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~--~~~~~~ 306 (885)
.+.... ..+++=++|+|++ .+...+..+...+. ....++.+|++|.+.+.. ......
T Consensus 84 ~~~~~p------------------~~~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 84 EVNKKP------------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHhcCc------------------ccCCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 332110 1134446666665 45556777777776 566788888888765421 112335
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
..+.+.++++++....+.+.+.... .+.+..++..++|.|.-+..
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHHH
Confidence 6889999999999888876653211 23367889999999876543
No 53
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=6.2e-08 Score=108.13 Aligned_cols=82 Identities=34% Similarity=0.485 Sum_probs=39.1
Q ss_pred CcccEEEecCCCccccCchhHhccc-cCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEE
Q 039262 562 PRLKVLNLSGAKQLFYFPLVISKLV-SLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLR 640 (885)
Q Consensus 562 ~~Lr~L~Ls~~~~i~~lp~~i~~L~-~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 640 (885)
+.++.|++.++ .+.++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|.. .+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhhee
Confidence 44555555554 4455544444442 555555555555555444455555555555554 34444432 22444555555
Q ss_pred eecccc
Q 039262 641 MFGIGY 646 (885)
Q Consensus 641 l~~~~~ 646 (885)
+.++.+
T Consensus 193 ls~N~i 198 (394)
T COG4886 193 LSGNKI 198 (394)
T ss_pred ccCCcc
Confidence 544443
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=2.2e-08 Score=98.52 Aligned_cols=106 Identities=22% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEE
Q 039262 561 MPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLR 640 (885)
Q Consensus 561 l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~ 640 (885)
.+.|..||||+| .|+.+-++..-++.++.|++|+|.|..+.. +..|++|++||+++| .+..+. ++-.+|-|.++|.
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhh-hhHhhhcCEeeee
Confidence 345666666666 566666666666666666666666655544 556666666666665 333332 2223455556665
Q ss_pred eecccccCCCCcccccchhhhcCCCCccEEEEEecccch
Q 039262 641 MFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 641 l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
+..|.+. .+..|+.|-+|..|++..|++..
T Consensus 359 La~N~iE---------~LSGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 359 LAQNKIE---------TLSGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred hhhhhHh---------hhhhhHhhhhheeccccccchhh
Confidence 5554432 23334444455555555555443
No 55
>PF13173 AAA_14: AAA domain
Probab=98.55 E-value=1.4e-07 Score=86.18 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
.+++.|.|+.|+||||++++++.+. . ....+++++..+......... + ....+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~-~---~~~~~~yi~~~~~~~~~~~~~------------------~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL-L---PPENILYINFDDPRDRRLADP------------------D-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-c---ccccceeeccCCHHHHHHhhh------------------h-hHHHHHHhh
Confidence 4789999999999999999999887 1 345677776655432110000 0 122233333
Q ss_pred ccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhh------ccCcceEEeccCChhhH
Q 039262 256 KEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL------MEAHKKFKVECLSHNDA 319 (885)
Q Consensus 256 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~e~ 319 (885)
..++.+++||++....+|......+- +.....+|++|+.+...... .+....++|.||+..|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 34678999999988888877766665 44456899999988765422 12234689999998763
No 56
>PRK08727 hypothetical protein; Validated
Probab=98.54 E-value=9.7e-07 Score=89.76 Aligned_cols=167 Identities=11% Similarity=0.071 Sum_probs=97.9
Q ss_pred ccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCC
Q 039262 157 VVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVN 236 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (885)
++|-...+..+.....+.....+.|+|..|+|||+|++.+++... .....++|+++.+ ....+.
T Consensus 22 ~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~---~~~~~~~y~~~~~------~~~~~~------- 85 (233)
T PRK08727 22 IAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE---QAGRSSAYLPLQA------AAGRLR------- 85 (233)
T ss_pred cCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEeHHH------hhhhHH-------
Confidence 334444444444444344446799999999999999999998862 2223566665422 111110
Q ss_pred ccccccchhHHHHHHHHHhccCcEEEEEccccchh---cccc-cccCCCCCCCCCcEEEEecCCh---------hHhhhc
Q 039262 237 DTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV---DLSK-VGIPLPGRLNNKSKVVFTTRSE---------EVCGLM 303 (885)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~~~~~gs~iivTtR~~---------~v~~~~ 303 (885)
...+.+ .+.-+||+||+.... .|.. +...+......|..||+|++.. ++.+.+
T Consensus 86 -------------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl 151 (233)
T PRK08727 86 -------------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL 151 (233)
T ss_pred -------------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH
Confidence 011111 123589999985321 2221 1111110113466799999853 222333
Q ss_pred cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.....+++++++.++-.+++.+++.......+ ++....|++.+.|-.-.+
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 34568899999999999999987744332222 456788888888766554
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.51 E-value=1.9e-05 Score=91.66 Aligned_cols=202 Identities=14% Similarity=0.080 Sum_probs=119.3
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC---CEEEEEEEcCc---cCHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNF---DVVIWVVVSKD---LRLENIQEAI 228 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~---~~~~~~~~~i 228 (885)
+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.. .....+ ...-|+.+... .+...+...+
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~-~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~l 232 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEA-KKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPL 232 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhh-hhccCCcccCCCCeEEEechhccCCHHHHhHHh
Confidence 3689999999999888876667789999999999999999998775 222222 12345544321 1222221111
Q ss_pred ---------------HHHcCCCC----------------ccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccc
Q 039262 229 ---------------GEKIGLVN----------------DTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSK 275 (885)
Q Consensus 229 ---------------~~~l~~~~----------------~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~ 275 (885)
+...+... ++.... ....+..+.+.+.++++.++-|+.|.. ..|+.
T Consensus 233 lg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-d~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 233 LGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-DPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred cCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-CHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 11111110 011111 123466788888889999997776643 45666
Q ss_pred cccCCCCCCCCCcEEEE--ecCChhH-hhhc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC
Q 039262 276 VGIPLPGRLNNKSKVVF--TTRSEEV-CGLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGG 351 (885)
Q Consensus 276 ~~~~l~~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G 351 (885)
+...+. ...+...|++ ||++... ...+ .....+.+.+++.+|.+.++.+.+.......+ .++...|++.+..
T Consensus 312 ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls---~eal~~L~~ys~~ 387 (615)
T TIGR02903 312 IKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA---AGVEELIARYTIE 387 (615)
T ss_pred hhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHCCCc
Confidence 665555 4444444555 5665432 1111 22346789999999999999998753321122 3445566665554
Q ss_pred chhHHHHHHHH
Q 039262 352 LPLALITIGRA 362 (885)
Q Consensus 352 lPLai~~~~~~ 362 (885)
-+-|+..++..
T Consensus 388 gRraln~L~~~ 398 (615)
T TIGR02903 388 GRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHH
Confidence 46666655544
No 58
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=1.1e-07 Score=74.09 Aligned_cols=58 Identities=38% Similarity=0.493 Sum_probs=32.6
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCC
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTN 597 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 597 (885)
+|++|++++| .+..+|...|.++++|++|++++| .++.+|. .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555666655 555555555566666666666655 4555442 44555555555555554
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.49 E-value=2.3e-06 Score=93.27 Aligned_cols=193 Identities=12% Similarity=0.118 Sum_probs=109.5
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHH---
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGE--- 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~--- 230 (885)
+.++|++..++.+.+++..+..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+ .....+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~--~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY--GDPWENNFTEFNVADFFD--QGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc--CcccccceEEechhhhhh--cchhhhhcCcc
Confidence 46899999999999999887767889999999999999999998862 22222 234444433110 00000000
Q ss_pred ---HcCCCCccccccchhHHHHHHHHHh------ccCcEEEEEccccchh--cccccccCCCCCCCCCcEEEEecCChh-
Q 039262 231 ---KIGLVNDTWKNRRTEQKALDIFRNL------KEKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVFTTRSEE- 298 (885)
Q Consensus 231 ---~l~~~~~~~~~~~~~~~~~~l~~~l------~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~- 298 (885)
.++.. .. ......+....+.+.. .+.+-++|+||+.... ....+...+. .....+++|+||.+..
T Consensus 91 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 91 FAHFLGTD-KR-IRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSK 167 (337)
T ss_pred hhhhhhhh-hh-hccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhh
Confidence 00000 00 0001111111111111 1334589999995432 2223333332 2234567777775432
Q ss_pred Hhhhc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 299 VCGLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 299 v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
+...+ .....+.+.+++.++...++.+.+.......+ .+....+++.++|.+-.+.
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22211 23456889999999999999887654332222 4568889999988766553
No 60
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.48 E-value=3.4e-06 Score=85.67 Aligned_cols=173 Identities=21% Similarity=0.220 Sum_probs=114.3
Q ss_pred ccchHHHH---HHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 157 VVGLQSQL---ERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 157 ~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.||.+..+ .-|.+.+..+....+.+||++|+||||||+.+...- +... ..||..|....-..-.++|.++..
T Consensus 140 yvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ts-k~~S----yrfvelSAt~a~t~dvR~ife~aq 214 (554)
T KOG2028|consen 140 YVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTS-KKHS----YRFVELSATNAKTNDVRDIFEQAQ 214 (554)
T ss_pred hcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhc-CCCc----eEEEEEeccccchHHHHHHHHHHH
Confidence 45555433 234555667888999999999999999999999886 2222 667887776665556666666542
Q ss_pred CCCccccccchhHHHHHHHHHhccCcEEEEEcccc--chhcccccccCCCCCCCCCcEEEE--ecCChhH---hhhccCc
Q 039262 234 LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIW--ERVDLSKVGIPLPGRLNNKSKVVF--TTRSEEV---CGLMEAH 306 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~iiv--TtR~~~v---~~~~~~~ 306 (885)
. ...+..+|.+|.+|.|. +..+.+.+ +| .-.+|.-++| ||.++.. +..+...
T Consensus 215 ~-----------------~~~l~krkTilFiDEiHRFNksQQD~f---LP-~VE~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 215 N-----------------EKSLTKRKTILFIDEIHRFNKSQQDTF---LP-HVENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred H-----------------HHhhhcceeEEEeHHhhhhhhhhhhcc---cc-eeccCceEEEecccCCCccchhHHHHhcc
Confidence 1 12345789999999994 33444433 45 5567777776 7887754 2334456
Q ss_pred ceEEeccCChhhHHHHHHHHhc---CCcc---C-CCc---hhHHHHHHHHHHhCCchhH
Q 039262 307 KKFKVECLSHNDAWELFRQKVG---GETL---N-CHP---DILELAETVAKECGGLPLA 355 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~---~~~~---~-~~~---~l~~~~~~i~~~c~GlPLa 355 (885)
.++.|++|+.++...++.+... .... . .++ -...+..-++..|+|-.-+
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 7899999999999999988442 2111 1 111 1245677788888886543
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.4e-06 Score=82.19 Aligned_cols=124 Identities=26% Similarity=0.205 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 158 VGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
+|++..+..+...+.....+.+.|+|.+|+||||+++.+++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~------ 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF------ 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh------
Confidence 47889999999998877778999999999999999999999872 222346666655433322211111000
Q ss_pred cccccchhHHHHHHHHHhccCcEEEEEccccch-----hcccccccCCCCC--CCCCcEEEEecCChh
Q 039262 238 TWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER-----VDLSKVGIPLPGR--LNNKSKVVFTTRSEE 298 (885)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----~~~~~~~~~l~~~--~~~gs~iivTtR~~~ 298 (885)
............++.++|+||++.. ..+......+... ...+..||+||....
T Consensus 72 --------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 --------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred --------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999742 1222222222100 135788888887653
No 62
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.8e-06 Score=98.50 Aligned_cols=181 Identities=18% Similarity=0.241 Sum_probs=110.7
Q ss_pred CcccchHHHHHHHHHHHccCCCcE-EEEEcCCCCcHHHHHHHHHHhhcCCCCC-------------------CCEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGI-VGLYGMGGVGKTTLMALINNKFLGSPTN-------------------FDVVIWVV 214 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 214 (885)
.+++|-+..++.|.+.+..++..- +.++|..|+||||+|+.+++... -... |.-++++.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Ln-ce~~~~~~pCg~C~sC~~i~~g~~~DviEid 94 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLN-CEQGVTATPCGVCSSCVEIAQGRFVDLIEVD 94 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhcc-CccCCCCCCCCCchHHHHHhcCCCceEEEec
Confidence 468999999999999998877665 58999999999999999998862 1111 11112221
Q ss_pred EcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEE
Q 039262 215 VSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVF 292 (885)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iiv 292 (885)
.+....+.. .+.|.+.+. ..-..+++-++|||++.. ......+...+. ......++|+
T Consensus 95 Aas~~kVDd-IReLie~v~------------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFIL 154 (944)
T PRK14949 95 AASRTKVDD-TRELLDNVQ------------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLL 154 (944)
T ss_pred cccccCHHH-HHHHHHHHH------------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEE
Confidence 111111111 112221110 011235677999999964 344555555554 3344566665
Q ss_pred ec-CChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 293 TT-RSEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 293 Tt-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
+| ....+... ......|++.+|+.++....+.+.+.......+ .+....|++.++|.|--+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 54 44444322 233568999999999999999987744322222 456788999999988644333
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.2e-05 Score=90.68 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=109.3
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.|.+++..++. ..+.++|+.|+||||+|+.+++..- ..+ ++... ....-...+.|...-.
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln--C~~-----~~~~~-pCg~C~sC~~I~~g~h 86 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN--CET-----GVTST-PCEVCATCKAVNEGRF 86 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCc-----CCCCC-CCccCHHHHHHhcCCC
Confidence 3689999999999999987754 5779999999999999999988761 110 10000 0000011111111000
Q ss_pred CCC---ccccccchhHHHHHHHHH-----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHh-h
Q 039262 234 LVN---DTWKNRRTEQKALDIFRN-----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVC-G 301 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~ 301 (885)
... +.......++.. .+... ..+++-++|+|++... .....+...+. ....+.++|++|.+. .+. .
T Consensus 87 pDviEIDAAs~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~T 164 (702)
T PRK14960 87 IDLIEIDAASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPIT 164 (702)
T ss_pred CceEEecccccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHH
Confidence 000 000001111111 11111 2356668999999643 34444544444 334556777766553 332 2
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
.......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+-.+.
T Consensus 165 IlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 165 VISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2234568999999999999999988754432222 4457889999999875443
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=7.3e-06 Score=89.37 Aligned_cols=189 Identities=17% Similarity=0.187 Sum_probs=107.1
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++... -..... ..+...-.....+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-c~~~~~-------~~pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-CQNGIT-------SNPCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCCCHHHHHHhcCCC
Confidence 4689999999999999887655 4678999999999999999998761 110000 000000001111111100
Q ss_pred CCCccc---cccchhHHHHHHHHHh-----ccCcEEEEEccccchh--cccccccCCCCCCCCCcEEEEecCCh-hHhhh
Q 039262 234 LVNDTW---KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGL 302 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~ 302 (885)
...... .....++ ...+.+.+ .+++-++|+|++.... .++.+...+. ......++|++|.+. .+...
T Consensus 88 ~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 88 LDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHH
Confidence 000000 0011111 11222221 2345699999996543 3445554554 334566677766543 33222
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.+....+++.+++.++..+.+.+.+.......+ ++.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 223467899999999999998887643321122 345788999999988644
No 65
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.43 E-value=2.7e-07 Score=102.91 Aligned_cols=101 Identities=31% Similarity=0.423 Sum_probs=47.2
Q ss_pred ceeEEEeecCCcccCCCCCCCC--CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeec
Q 039262 516 KVRRLSLMENQIDNLSGVPTCP--YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDL 593 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (885)
.+..+.+.++.+..++...... +|+.|++++| .+..+|.. +..+++|+.|++++| .+..+|...+.+.+|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhccccccccc-chhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhheec
Confidence 3444455544444444433332 4555555554 34444211 344455555555555 44455444444455555555
Q ss_pred CCCCccccchhhhccCCCcEEecCCc
Q 039262 594 SDTNVAVLPKELNALVNLKCLNLENA 619 (885)
Q Consensus 594 ~~~~i~~Lp~~l~~L~~L~~L~l~~~ 619 (885)
++|++..+|..+..+..|++|.+++|
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCC
Confidence 55555555544444444555555444
No 66
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.5e-05 Score=84.14 Aligned_cols=201 Identities=17% Similarity=0.264 Sum_probs=127.0
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
..+.+||.+++++...|.. ....-+.|+|..|+|||+.++.+...........+ +++|.+-...+..+++..|+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHH
Confidence 3489999999999988754 33445999999999999999999999832222222 899999999999999999999
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchhcc--cccccCCCCCCCCCcEEEE--ecCChhHhhhcc
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERVDL--SKVGIPLPGRLNNKSKVVF--TTRSEEVCGLME 304 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~--~~~~~~l~~~~~~gs~iiv--TtR~~~v~~~~~ 304 (885)
+++... ..+.+..+....+.+.+. ++.+++|||+++....- +-+...+.......++|++ .+-+......++
T Consensus 96 ~~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 96 KLGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HcCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 996322 134455666667777665 47899999999643221 1111111101112454433 444433322221
Q ss_pred -------CcceEEeccCChhhHHHHHHHHhc---CCccCCCchhHHHHHHHHHHhCC-chhHHHHH
Q 039262 305 -------AHKKFKVECLSHNDAWELFRQKVG---GETLNCHPDILELAETVAKECGG-LPLALITI 359 (885)
Q Consensus 305 -------~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~~ 359 (885)
....+...|-+.+|-...+..++. .... .+++.-++...++..-+| --.||..+
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 123378899999999999999873 2232 233333444444444444 44455433
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=5.2e-06 Score=93.23 Aligned_cols=197 Identities=16% Similarity=0.123 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.++||-+..++.|.+.+..++.. .+.++|..|+||||+|+.+.+... ...-+..--+. +.....-...+.|...-.
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn--C~~p~~~~g~~-~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN--CTGADGEGGIT-AQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCccccccCC-CCCCcccHHHHHHHcCCC
Confidence 36899999999999999887654 568999999999999999988762 10000000000 000000011111111000
Q ss_pred CCC---ccccccchhHHHHHHHHH----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE-EecCChhHhhh-
Q 039262 234 LVN---DTWKNRRTEQKALDIFRN----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV-FTTRSEEVCGL- 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~~~- 302 (885)
... +.......++....+... ..++.-++|+|++... ..+..+...+. ....++++| +||....+...
T Consensus 93 pDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 93 VDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred CcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhhhHH
Confidence 000 000011122222111111 1355669999999643 34555555554 333455554 55555555322
Q ss_pred ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 303 MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 303 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
......+.+..++.++..+.+.+.+.......+ .+..+.|++.++|.|.-...
T Consensus 172 rSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 172 LSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 233567899999999999999887754332222 34568899999999965443
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.8e-06 Score=92.00 Aligned_cols=194 Identities=19% Similarity=0.137 Sum_probs=112.3
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..++.|..++..+... .+.++|++|+||||+|+.+++... -.+.+....|.|.+. +.+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~-c~~~~~~~cg~C~sc--------~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN-CSGEDPKPCGECESC--------LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh-ccCCCCCCCCcChhh--------HHHhcCCC
Confidence 35899999999999998887654 569999999999999999998872 112222223332211 00000000
Q ss_pred CCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecC-ChhHhhh
Q 039262 234 LVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTR-SEEVCGL 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR-~~~v~~~ 302 (885)
... +.......+. ...+.+.+ .+++-++|+|+++.. ..+..+...+. .....+.+|++|. ...+...
T Consensus 85 ~dv~el~~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 85 PDVLEIDAASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred CceEEecccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChH
Confidence 000 0000111111 11222222 245669999999743 34555555554 3334555555554 3444322
Q ss_pred c-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH-HHHHHH
Q 039262 303 M-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL-ITIGRA 362 (885)
Q Consensus 303 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai-~~~~~~ 362 (885)
. .....+++.+++.++..+.+.+.+.......+ .+....|++.++|.+--+ ..+-..
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2 23567899999999999999998754332222 456789999999988544 444333
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.37 E-value=4.1e-06 Score=85.29 Aligned_cols=171 Identities=13% Similarity=0.131 Sum_probs=101.1
Q ss_pred cccchH-HHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 156 TVVGLQ-SQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 156 ~~vGr~-~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.++|.. ..+..+.++....+.+.+.|+|+.|+|||+|++.+++... ..-..+.++.+.....
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~~~~~v~y~~~~~~~~-------------- 86 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS---QRGRAVGYVPLDKRAW-------------- 86 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEEHHHHhh--------------
Confidence 445633 3344444444445567899999999999999999998862 2234566766543110
Q ss_pred CCccccccchhHHHHHHHHHhccCcEEEEEccccch---hcccccc-cCCCCCCCCC-cEEEEecCCh---------hHh
Q 039262 235 VNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER---VDLSKVG-IPLPGRLNNK-SKVVFTTRSE---------EVC 300 (885)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~-~~l~~~~~~g-s~iivTtR~~---------~v~ 300 (885)
... .+.+.+.. --++++||+... ..|+... ..+......| .++|+||+.. ++.
T Consensus 87 --------~~~----~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~ 153 (235)
T PRK08084 87 --------FVP----EVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLA 153 (235)
T ss_pred --------hhH----HHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHH
Confidence 000 11111111 237899999542 2333211 1111011123 4789998754 233
Q ss_pred hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 301 GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 301 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
+.+....+++++++++++-.+.+.+++.......+ +++..-|++.+.|..-++..+
T Consensus 154 SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 154 SRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 44455678999999999999999886643322222 456888888888776655443
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.36 E-value=9.6e-06 Score=87.69 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=105.9
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE--cCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV--SKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l 232 (885)
.+++|+++.++.+.+++.....+.+.++|..|+||||+|+.+++... ...+. ..++.+ +.......+ .+.+..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~--~~~~~-~~~i~~~~~~~~~~~~~-~~~i~~~ 92 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY--GEDWR-ENFLELNASDERGIDVI-RNKIKEF 92 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc--CCccc-cceEEeccccccchHHH-HHHHHHH
Confidence 35899999999999999877777789999999999999999999862 22222 122222 222221111 1111111
Q ss_pred CCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhh-hccCcce
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCG-LMEAHKK 308 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~-~~~~~~~ 308 (885)
....+ .....+-++++|++... .....+...+. .....+++|+++... .+.. .......
T Consensus 93 ~~~~~----------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 93 ARTAP----------------VGGAPFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HhcCC----------------CCCCCceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 10000 00123558999998532 22333333333 233456677766432 2211 1123346
Q ss_pred EEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 309 FKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 309 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+++.+++.++....+...+.......+ .+....+++.++|.+--+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 899999999999999887754432222 446788999999987654
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=4.4e-06 Score=81.13 Aligned_cols=176 Identities=18% Similarity=0.219 Sum_probs=91.6
Q ss_pred CcccchHHHHHHHHHHHc-----cCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLV-----QEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
.+|+|-++.++.+.-.+. ++....+.+||++|+||||||..+++.. ...|. +.+... .....-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~~-i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGPA-IEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECCC---SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccchh-hhhHHHHHHHH
Confidence 468999988887655443 2457789999999999999999999997 33342 222211 11011111222
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccc--hh-------ccccccc--CCCCC---------CCCCcE
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWE--RV-------DLSKVGI--PLPGR---------LNNKSK 289 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~-------~~~~~~~--~l~~~---------~~~gs~ 289 (885)
..+ +++-+|.+|++.. .. ..++... ..... ..+-+-
T Consensus 97 ~~l------------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 97 TNL------------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp HT--------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred Hhc------------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 222 1234566677632 11 1111110 00000 011233
Q ss_pred EEEecCChhHhhhccCc--ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhc
Q 039262 290 VVFTTRSEEVCGLMEAH--KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMS 364 (885)
Q Consensus 290 iivTtR~~~v~~~~~~~--~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~ 364 (885)
|=-|||...+...+... -..+++..+.+|-..+..+.+..-....+ ++.+.+|+++|.|-|--..-+-+..+
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 44588876554444332 34589999999999999887754332222 56799999999999976655544443
No 72
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=1.1e-06 Score=89.34 Aligned_cols=91 Identities=20% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc--cCHHHHHHHHHH-----HcCCCCccccccchhHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD--LRLENIQEAIGE-----KIGLVNDTWKNRRTEQK 247 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~-----~l~~~~~~~~~~~~~~~ 247 (885)
.-..++|+|.+|+|||||++.+++.. . ..+|+.++|+.+... .++.++++.+.. +++.+... ........
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~-~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPER-HVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHH-HHHHHHHH
Confidence 45689999999999999999999997 3 348999999998776 789999999833 33221100 00000111
Q ss_pred HHHHHH-HhccCcEEEEEcccc
Q 039262 248 ALDIFR-NLKEKKFVLLLDDIW 268 (885)
Q Consensus 248 ~~~l~~-~l~~k~~LlVlDdv~ 268 (885)
...... .-.++++++++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 112222 134799999999984
No 73
>PRK09087 hypothetical protein; Validated
Probab=98.34 E-value=8.1e-06 Score=82.25 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=87.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
..+.+.|+|..|+|||+|++.++... . ..+++.. .+..++...
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-~-------~~~i~~~------~~~~~~~~~----------------------- 85 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-D-------ALLIHPN------EIGSDAANA----------------------- 85 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-C-------CEEecHH------HcchHHHHh-----------------------
Confidence 45679999999999999999988764 1 1133221 111111111
Q ss_pred hccCcEEEEEccccch----hcccccccCCCCCCCCCcEEEEecCC---------hhHhhhccCcceEEeccCChhhHHH
Q 039262 255 LKEKKFVLLLDDIWER----VDLSKVGIPLPGRLNNKSKVVFTTRS---------EEVCGLMEAHKKFKVECLSHNDAWE 321 (885)
Q Consensus 255 l~~k~~LlVlDdv~~~----~~~~~~~~~l~~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~e~~~ 321 (885)
+.+ -+|++||+... ..+-.+...+ ...|..||+|++. ++....+.....++++++++++-.+
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~---~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSV---RQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHH---HhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 111 27888999532 1222222222 2346779998874 2334445566789999999999999
Q ss_pred HHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 322 LFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 322 Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
++.+++.......+ +++..-|++.+.|..-++..
T Consensus 161 iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 161 VIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 99998854432223 45688888888888776654
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=1.9e-05 Score=85.24 Aligned_cols=195 Identities=12% Similarity=0.043 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCC-CCCCE-EE-EEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSP-TNFDV-VI-WVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~-~~-wv~~s~~~~~~~~~~~i~~ 230 (885)
.+++|.++.++.|.+.+..++.. .+.++|+.|+||+|+|..+++..--.. ...+. .. -.+.... ..-...+.|..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~c~~i~~ 97 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPVARRIAA 97 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChHHHHHHc
Confidence 46899999999999999887655 588999999999999999888762100 00000 00 0000000 00011111111
Q ss_pred HcCCC-------Cccc-----cccchhHHHHHHHHHhc-----cCcEEEEEccccc--hhcccccccCCCCCCCCCcEEE
Q 039262 231 KIGLV-------NDTW-----KNRRTEQKALDIFRNLK-----EKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVV 291 (885)
Q Consensus 231 ~l~~~-------~~~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~ii 291 (885)
.--.+ .++. .....++ +..+.+.+. +.+-++|+||+.. ......+...+. ....++.+|
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~I 175 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFL 175 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEE
Confidence 10000 0000 0111222 333444433 4567999999953 233444444443 333456666
Q ss_pred EecCChh-Hhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 292 FTTRSEE-VCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 292 vTtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
++|.+.. +... ......+.+.+++.++..+++.+...... .+....+++.++|.|.....+
T Consensus 176 L~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 6666543 3222 23356789999999999999987653211 112367899999999866554
No 75
>PLN03025 replication factor C subunit; Provisional
Probab=98.33 E-value=7.8e-06 Score=87.72 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.++.++.|.+++..++.+.+.++|++|+||||+|+.+++... ...|. .++-+..++..... ..+++++.+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~eln~sd~~~~~-~vr~~i~~~~ 89 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL--GPNYKEAVLELNASDDRGID-VVRNKIKMFA 89 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh--cccCccceeeecccccccHH-HHHHHHHHHH
Confidence 35899999999998888777777788999999999999999998862 22232 22222333322222 2222222211
Q ss_pred CCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--cccccccCCCCCCCCCcEEEEecCCh-hHhhh-ccCcceE
Q 039262 234 LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGL-MEAHKKF 309 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~ 309 (885)
.... . .-.++.-++|+|+++... ....+...+. .....+++|+++... .+... ......+
T Consensus 90 ~~~~-----~----------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 90 QKKV-----T----------LPPGRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred hccc-----c----------CCCCCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcc
Confidence 0000 0 001345689999996532 2233333332 234456777766442 22111 1223578
Q ss_pred EeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 310 KVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 310 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
++.++++++....+...+.......+ .+....|++.++|..-.+
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 99999999999999988754432222 345788999999876444
No 76
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.3e-06 Score=85.98 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHHc---cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLV---QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+||+++++++.+.+. ....+.+.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999993 2456899999999999999999999987
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=5.3e-07 Score=70.15 Aligned_cols=57 Identities=39% Similarity=0.617 Sum_probs=37.3
Q ss_pred CcccEEEecCCCccccCch-hHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCc
Q 039262 562 PRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENA 619 (885)
Q Consensus 562 ~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~ 619 (885)
++|++|++++| .+..+|. .+.++++|++|++++|.+..+| ..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35667777776 6666663 4566677777777777666666 34566666777766666
No 78
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=1.4e-06 Score=80.26 Aligned_cols=117 Identities=21% Similarity=0.244 Sum_probs=78.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
+.+++.|+|.+|+|||++++.+.+..... ...-..++|+.+....+...+...|+..++..... ..+..+....+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~~~ 80 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSLLI 80 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHHHH
Confidence 35689999999999999999999886210 00134677999988889999999999999876532 245666777788
Q ss_pred HHhccCcE-EEEEccccch---hcccccccCCCCCCCCCcEEEEecCC
Q 039262 253 RNLKEKKF-VLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRS 296 (885)
Q Consensus 253 ~~l~~k~~-LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~ 296 (885)
+.+...+. +||+||+... ..++.+.... ...+.++|+..+.
T Consensus 81 ~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLFSDEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHHTHHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcCCHHHHHHHHHHH---hCCCCeEEEEECh
Confidence 88876555 9999999653 2233333222 2556677776654
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2e-05 Score=88.04 Aligned_cols=186 Identities=18% Similarity=0.216 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCC-C-----------------CCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPT-N-----------------FDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~-----------------f~~~~wv~~ 215 (885)
++++|.+.....|...+..+.. +.+.++|++|+||||+|+.+++....... . +..++.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4689999988888888877766 45899999999999999999887621000 0 001222222
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
+.......+ +.|.+.... .-..+++-++|+|++..- ...+.+...+. .......+|++
T Consensus 94 a~~~gid~i-R~i~~~~~~------------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ila 153 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGY------------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLA 153 (472)
T ss_pred cccCCHHHH-HHHHHHHhh------------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEE
Confidence 111111111 111111100 012245669999999642 23444444443 22233444444
Q ss_pred cCC-hhHhhhc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC-chhHHHHHHHHh
Q 039262 294 TRS-EEVCGLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGG-LPLALITIGRAM 363 (885)
Q Consensus 294 tR~-~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~~~~~l 363 (885)
|.+ ..+...+ .....+.+.+++.++....+.+.+.......+ .+....|++.++| .+.|+..+..+.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 433 3443322 33467899999999999999887743332222 3457888888865 567776665543
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.6e-05 Score=89.63 Aligned_cols=184 Identities=20% Similarity=0.191 Sum_probs=110.1
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCC------------------CCCCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSP------------------TNFDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 215 (885)
.+++|-+..++.|...+..++. ..+.++|+.|+||||+|+.+++...... +.|...+++..
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 3689999999999999987655 4578999999999999999998651100 01222223322
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE-
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV- 291 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii- 291 (885)
.....++++ +.+++ .+.. -..+++-++|+|++... ..++.+...+. .....+.+|
T Consensus 96 as~~gvd~i-r~ii~-------------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL 154 (546)
T PRK14957 96 ASRTGVEET-KEILD-------------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFIL 154 (546)
T ss_pred ccccCHHHH-HHHHH-------------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEE
Confidence 111111111 11111 1111 12356679999999643 34555555554 333455555
Q ss_pred EecCChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHHHH
Q 039262 292 FTTRSEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIGRA 362 (885)
Q Consensus 292 vTtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~~~ 362 (885)
+||....+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+- |+..+-.+
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e---~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSD---EQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45544444322 334578999999999998888886643322222 4457889999999664 55554433
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.6e-05 Score=87.44 Aligned_cols=193 Identities=15% Similarity=0.130 Sum_probs=110.3
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.+++|-+..+..|...+..+.. +.+.++|+.|+||||+|+.+++.... ..... .-.+..+... .....|....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc-~~~~~~~~~~~~C~~C----~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC-SALITENTTIKTCEQC----TNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-ccccccCcCcCCCCCC----hHHHHHhcCC
Confidence 3579999999999888777654 57899999999999999999988621 11000 0000011111 0111111100
Q ss_pred CCCCcc---ccccchhHHHHHHHH----HhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhhh
Q 039262 233 GLVNDT---WKNRRTEQKALDIFR----NLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCGL 302 (885)
Q Consensus 233 ~~~~~~---~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (885)
....-. ......++....+.. -+.+++-++|+|+++.. ..+..+...+. .....+.+|+ ||+...+...
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~t 174 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPAT 174 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHH
Confidence 000000 001111221111111 12356779999999753 44666655554 3345556554 5555555433
Q ss_pred c-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 303 M-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 303 ~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+ .....+++.+++.++....+.+.+.......+ .+....|++.++|.+--+
T Consensus 175 I~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 175 IISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 3 23467899999999999999998854432222 345678999999977544
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.2e-08 Score=98.65 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=74.7
Q ss_pred cceeeEecCCCCCCccccc-ccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCC---CCC
Q 039262 692 CTQALYLKDFKSSKSLDVS-ALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLK---DLT 767 (885)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~---~l~ 767 (885)
+|+.|.|+.|++++..... .+.+|+.|.+|+++.|...... ....- .+.-++|+.|+|+||.+-- .+.
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~ 306 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAV-------AHISETLTQLNLSGYRRNLQKSHLS 306 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHH-------hhhchhhhhhhhhhhHhhhhhhHHH
Confidence 4455555555554443322 3456677777777777443321 11100 1134577777887775321 122
Q ss_pred c-cCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccc-cCCCCCCCCCcceEEEccC
Q 039262 768 F-LAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQS-IYWKPLPFPHLKEMKVIHC 838 (885)
Q Consensus 768 ~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~-i~~~~~~~p~L~~L~i~~c 838 (885)
. ...+|+|.+|+|++|..++.- ....+..|+.|++|.++.|..+-- --......|+|.+|++.+|
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~------~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKND------CFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHhCCceeeeccccccccCch------HHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 2 236778888888887766551 113566778888888877765321 1123456788888888776
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=2.1e-06 Score=100.39 Aligned_cols=104 Identities=22% Similarity=0.316 Sum_probs=67.3
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCcc-ccCchhHhccccCCEeecCCCCcc-ccchhhhccCCCcEEe
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL-FYFPLVISKLVSLQHLDLSDTNVA-VLPKELNALVNLKCLN 615 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i-~~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~l~~L~~L~~L~ 615 (885)
.++.|+|++|.....+|.. +..+++|+.|+|++| .+ ..+|..++.+.+|++|+|++|.+. .+|..+++|++|++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 3666777776322344443 667777777777777 44 367777777777777777777774 5677777777777777
Q ss_pred cCCccccccccchhhcC-CCCCcEEEeecc
Q 039262 616 LENAWMLTVIPRRLISS-FSSLHVLRMFGI 644 (885)
Q Consensus 616 l~~~~~l~~lp~~~i~~-l~~L~~L~l~~~ 644 (885)
|++|.....+|.. ++. +.++..+++.+|
T Consensus 497 Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 497 LNGNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CcCCcccccCChH-HhhccccCceEEecCC
Confidence 7777555566665 333 344555655554
No 84
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-05 Score=88.01 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=110.2
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..+..|..++..+... .+.++|+.|+||||+|+.+++... ...... ...+.....- +.+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln--ce~~~~--~~pCg~C~sC----~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN--CENPIG--NEPCNECTSC----LEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC--cccccC--ccccCCCcHH----HHHHccCC
Confidence 36899999999999999887764 589999999999999999998862 111110 0011111111 12221111
Q ss_pred CCCccc---cccchhHHHHHHHHH-----hccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEE-EecCChhHhhh
Q 039262 234 LVNDTW---KNRRTEQKALDIFRN-----LKEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVV-FTTRSEEVCGL 302 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~~~ 302 (885)
...-.. .....++ ...+.+. ..++.-++|+|++.. ...+..+...+. .......+| .||....+...
T Consensus 90 ~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 90 SDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred ccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHH
Confidence 100000 0111111 1122222 235666999999964 344565555554 223344444 45554544322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
......|.+.+++.++..+.+.+.+.......+ .+....|++.++|.+.-+
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHH
Confidence 233467999999999999999887754332222 456789999999988543
No 85
>PTZ00202 tuzin; Provisional
Probab=98.25 E-value=1.1e-05 Score=85.35 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=97.1
Q ss_pred CCcccchHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.+.|+||+.+...+...|.+ +..+++.|+|++|+|||||++.+.... . ...++.-.. +..++++.|+.
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l-~------~~qL~vNpr--g~eElLr~LL~ 331 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE-G------MPAVFVDVR--GTEDTLRSVVK 331 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC-C------ceEEEECCC--CHHHHHHHHHH
Confidence 46799999999999999864 234699999999999999999999765 1 123333333 67999999999
Q ss_pred HcCCCCccccccchhHHHHHHHHH-hc-cCcEEEEEc-----cccchhcccccccCCCCCCCCCcEEEEecCChhHhhh-
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRN-LK-EKKFVLLLD-----DIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL- 302 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~-l~-~k~~LlVlD-----dv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~- 302 (885)
+|+.........-.......+.+. -. +++.+||+- ++.. .+.+. ..+- ....-|.|++----+.+.-.
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~r--vyne~-v~la-~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQR--VYNEV-VALA-CDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHH--HHHHH-HHHH-ccchhheeeeeehHhhcchhc
Confidence 999743211111122233333332 12 567777762 2210 01110 0111 22345667664433332111
Q ss_pred --ccCcceEEeccCChhhHHHHHHHHh
Q 039262 303 --MEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 303 --~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
...-..|.+++++.++|.++-.+..
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhcc
Confidence 1223468899999999998877754
No 86
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.25 E-value=1.8e-05 Score=92.54 Aligned_cols=167 Identities=21% Similarity=0.304 Sum_probs=98.9
Q ss_pred cccchHHHHH---HHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGLQSQLE---RVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
+|+|.+..+. .+.+.+..+....+.++|++|+||||+|+.+++.. ...|. .+..+. ....+
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~-~~i~d--------- 92 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL-AGVKD--------- 92 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh-hhhHH---------
Confidence 5789888774 46666777777788999999999999999999876 33441 111110 00000
Q ss_pred CCCCccccccchhHHHHHHHHHh--ccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEE--ecCChh--Hhh-hc
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNL--KEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVF--TTRSEE--VCG-LM 303 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iiv--TtR~~~--v~~-~~ 303 (885)
..+......+.+ .+++.++|+||++. ....+.+...+ ..|+.++| ||.+.. +.. ..
T Consensus 93 -----------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l----E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 93 -----------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV----ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred -----------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh----cCceEEEEEecCCChHhhhhhHhh
Confidence 011111111111 24677999999964 33344443333 23555555 444432 211 11
Q ss_pred cCcceEEeccCChhhHHHHHHHHhcC-------CccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVGG-------ETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~~-------~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.....+.+++++.++...++.+.+.. .....+ ++....|++.+.|..-.+
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSL 214 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHH
Confidence 23457899999999999999987641 111112 455788888888865433
No 87
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.24 E-value=8.1e-08 Score=105.48 Aligned_cols=155 Identities=31% Similarity=0.363 Sum_probs=107.6
Q ss_pred CcccccceeEEEeecCCcccCCCC---------------------------------CCCCCceeeeccCCccccccCch
Q 039262 510 DVRKWEKVRRLSLMENQIDNLSGV---------------------------------PTCPYLLTLFLNNNKQLLIMDRG 556 (885)
Q Consensus 510 ~~~~~~~lr~L~l~~~~~~~l~~~---------------------------------~~~~~Lr~L~l~~~~~l~~~~~~ 556 (885)
.+..++++|+|.+.++++....++ ...-.|.+.++++| .+..+..+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN-~L~~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYN-RLVLMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchh-hHHhHHHH
Confidence 345567999999988876543222 11123444455555 34434333
Q ss_pred hhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCC
Q 039262 557 FFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSS 635 (885)
Q Consensus 557 ~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~ 635 (885)
+.-++.|+.|||++| .+.+.- .+..|++|++|||++|.+..+|. +...+. |+.|.+++| .++.+-. +.+|.+
T Consensus 183 -Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL~g--ie~Lks 255 (1096)
T KOG1859|consen 183 -LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTLRG--IENLKS 255 (1096)
T ss_pred -HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhhhh--HHhhhh
Confidence 666788999999999 777765 78889999999999999988884 233333 999999988 5666654 788999
Q ss_pred CcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccc
Q 039262 636 LHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 636 L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
|+.|++..|-+.... .+.-|..|..|+.|++.+|+..
T Consensus 256 L~~LDlsyNll~~hs------eL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 256 LYGLDLSYNLLSEHS------ELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhccchhHhhhhcch------hhhHHHHHHHHHHHhhcCCccc
Confidence 999999887665432 4445666777788888877653
No 88
>PRK05642 DNA replication initiation factor; Validated
Probab=98.23 E-value=1.3e-05 Score=81.62 Aligned_cols=152 Identities=14% Similarity=0.211 Sum_probs=91.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
...+.|+|..|+|||.|++.+++... ..-..++|++..+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~---~~~~~v~y~~~~~------~~~~--------------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE---QRGEPAVYLPLAE------LLDR--------------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEeeHHH------HHhh--------------------hHHHHHhh
Confidence 36789999999999999999988762 1224567776432 1110 01222233
Q ss_pred ccCcEEEEEccccch---hcccc-cccCCCCCCCCCcEEEEecCChhH---------hhhccCcceEEeccCChhhHHHH
Q 039262 256 KEKKFVLLLDDIWER---VDLSK-VGIPLPGRLNNKSKVVFTTRSEEV---------CGLMEAHKKFKVECLSHNDAWEL 322 (885)
Q Consensus 256 ~~k~~LlVlDdv~~~---~~~~~-~~~~l~~~~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~e~~~L 322 (885)
.+-. +||+||+... ..|+. +...+......|..||+|++...- .+.+.....++++++++++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3222 6788999522 23332 222222112346778998875321 22233346789999999999999
Q ss_pred HHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 323 FRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 323 f~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
+..++.......+ +++..-|++.+.|..-.+..+-
T Consensus 175 l~~ka~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 175 LQLRASRRGLHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 9976643322222 4668888888888766654443
No 89
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.22 E-value=2.4e-07 Score=93.86 Aligned_cols=87 Identities=25% Similarity=0.166 Sum_probs=52.5
Q ss_pred CCCCCceeeeccCCccccc---cCchhhcCCCcccEEEecCC---CccccCchh-------HhccccCCEeecCCCCc--
Q 039262 534 PTCPYLLTLFLNNNKQLLI---MDRGFFQCMPRLKVLNLSGA---KQLFYFPLV-------ISKLVSLQHLDLSDTNV-- 598 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~---~~~~~~~~l~~Lr~L~Ls~~---~~i~~lp~~-------i~~L~~L~~L~L~~~~i-- 598 (885)
..+..+..|+|++|..-.. .-...+.+.+.||..++|+- +...++|+. +-.+++|++||||.|-+
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4556777788887731110 11223566677888888764 122334543 33456888888888854
Q ss_pred ---cccchhhhccCCCcEEecCCcc
Q 039262 599 ---AVLPKELNALVNLKCLNLENAW 620 (885)
Q Consensus 599 ---~~Lp~~l~~L~~L~~L~l~~~~ 620 (885)
..+-.-+.++.+|++|+|.+|.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCC
Confidence 2233446677888888888883
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=3.7e-05 Score=83.76 Aligned_cols=186 Identities=9% Similarity=0.001 Sum_probs=103.2
Q ss_pred CcccchHHHHHHHHHHHccCC----------CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEP----------AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
++++|-+..++.|.+.+..+. .+-+.++|+.|+||||+|+.++.... ...-+ +-+++.. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~--c~~~~---~~~Cg~C----~~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQ--CTDPD---EPGCGEC----RA 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCCCC---CCCCCCC----HH
Confidence 368999999999999997753 45688999999999999999988651 11000 0001110 00
Q ss_pred HHHHHHHcCCCC----ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 225 QEAIGEKIGLVN----DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 225 ~~~i~~~l~~~~----~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
.+.+...-.... ........++ +..+.+.+ .+++-++|+|++... .....+...+. ....+..+|++
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE-ep~~~~~fIL~ 153 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE-EPPPRTVWLLC 153 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh-cCCCCCeEEEE
Confidence 111110000000 0000011111 11222222 244558888999643 23333444443 33445666665
Q ss_pred cCCh-hHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 294 TRSE-EVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 294 tR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
|.+. .+... ......+.+.+++.++..+.+.+..+. + .+.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~-----~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV-----D---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 5553 44322 233468899999999999988754321 1 344788999999999765443
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.5e-05 Score=91.15 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=108.5
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.++||-+..++.|...+..+... .+.++|..|+||||+|+.+++..-- ...+. +.....-...+.|...-.
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c-~~~~~-------~~pCg~C~~C~~i~~g~~ 87 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC-ETGIT-------ATPCGECDNCREIEQGRF 87 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh-ccCCC-------CCCCCCCHHHHHHHcCCC
Confidence 46899999999999999887664 4689999999999999999887621 00000 000011112222211000
Q ss_pred CCC---ccccccchhHHHHHHHHH-----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhh-
Q 039262 234 LVN---DTWKNRRTEQKALDIFRN-----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCG- 301 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~- 301 (885)
... +.......++. ..+.+. ..+++-++|+|++... .....+...+. ......++|+ ||....+..
T Consensus 88 ~D~ieidaas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 88 VDLIEIDAASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCceeecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchH
Confidence 000 00000111111 112111 2356679999999643 34455544443 3334555555 554444432
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
.......|.+.+++.++....+.+.+.......+ .+....|++.++|.+--+..
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e---~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFE---PRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 2233568999999999999999887643321111 34568899999998864433
No 92
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3.2e-05 Score=85.85 Aligned_cols=179 Identities=17% Similarity=0.187 Sum_probs=110.0
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCC------------------CCCCCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGS------------------PTNFDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~~ 215 (885)
.+++|-+..++.|.+.+..+... .+.++|+.|+||||+|+.++...--. .+.+.-++.+..
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 46899999999999888877665 79999999999999999998753100 011122333333
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
+....+.++ ++|.+..... -..+++-++|+|++... .....+...+. .....+++|++
T Consensus 93 as~~~vddI-R~Iie~~~~~------------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIla 152 (491)
T PRK14964 93 ASNTSVDDI-KVILENSCYL------------------PISSKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILA 152 (491)
T ss_pred ccCCCHHHH-HHHHHHHHhc------------------cccCCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEE
Confidence 322222221 1222221100 01245568999999542 33444544554 33455666655
Q ss_pred c-CChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 294 T-RSEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 294 t-R~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
| ....+... ......+.+.+++.++....+.+.+.......+ .+....|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 44455332 234567899999999999999988754432222 345788999999987544
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=5.7e-05 Score=82.96 Aligned_cols=182 Identities=13% Similarity=0.176 Sum_probs=109.0
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCC-C------------------CCCCEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGS-P------------------TNFDVVIWVV 214 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-~------------------~~f~~~~wv~ 214 (885)
.+++|.+..++.+.+.+..+.. ..+.++|+.|+||||+|+.+....... . .+++. +++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 3589999999999999987654 467899999999999999998875210 0 12222 2222
Q ss_pred EcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE
Q 039262 215 VSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF 292 (885)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv 292 (885)
.+...... ..+++.+.+... -..+++-++|+|++... .....+...+. .....+.+|+
T Consensus 93 ~~~~~~~~-~~~~l~~~~~~~------------------p~~~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl 152 (355)
T TIGR02397 93 AASNNGVD-DIREILDNVKYA------------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFIL 152 (355)
T ss_pred ccccCCHH-HHHHHHHHHhcC------------------cccCCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEE
Confidence 22111111 112222221100 01234558899998543 33444444443 3344566666
Q ss_pred ecCChh-Hhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 293 TTRSEE-VCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 293 TtR~~~-v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
+|.+.. +... ......+++.++++++..+.+...+.......+ .+.+..+++.++|.|..+....
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 665543 2222 223457889999999999999887743332222 3568889999999987664443
No 94
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.3e-05 Score=88.48 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=107.8
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCC------------------CCCCCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGS------------------PTNFDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~~f~~~~wv~~ 215 (885)
.++||-+..++.|.+++..+... .+.++|+.|+||||+|+.+++..--. .+.|.-++.+..
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 36899999999999999887665 47899999999999999998876110 011112333332
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
+....++++ +++++.+... -..++.-++|+|++... .....+...+. .....+++|++
T Consensus 96 as~~~v~~i-R~l~~~~~~~------------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIla 155 (509)
T PRK14958 96 ASRTKVEDT-RELLDNIPYA------------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILA 155 (509)
T ss_pred cccCCHHHH-HHHHHHHhhc------------------cccCCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEE
Confidence 222222221 2222222110 01245568999999642 34444444444 33445666655
Q ss_pred cC-ChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 294 TR-SEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 294 tR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
|. ...+... ......+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDA 217 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 44 3333322 233467899999999988887777643332222 345678899999988544
No 95
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.19 E-value=1.4e-05 Score=87.59 Aligned_cols=171 Identities=20% Similarity=0.255 Sum_probs=99.2
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|+++.+++|.+.+.. ...+-+.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~~---- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVVG---- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecch----
Confidence 3689999999999887642 134569999999999999999999987 2333 22211
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh----------------cccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV----------------DLSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 283 (885)
..+ ..... . ........+.+.. ...+.+|++||++... .+..+...+.. .
T Consensus 190 ~~l----~~~~~-------g-~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 190 SEL----VRKYI-------G-EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHH----HHHhh-------h-HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 111 11110 0 0111112222222 2467899999986421 01111111110 1
Q ss_pred CCCCcEEEEecCChhH-----hhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 284 LNNKSKVVFTTRSEEV-----CGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
...+.+||.||..... .........+.+...+.++..++|...+.......+-+ ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1346778888875432 11112245789999999999999998875443222122 467777887764
No 96
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=1.8e-05 Score=90.08 Aligned_cols=178 Identities=13% Similarity=0.168 Sum_probs=105.2
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCC-------------------CCEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTN-------------------FDVVIWVV 214 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-------------------f~~~~wv~ 214 (885)
.+++|.+..+..|.+++..++. ..+.++|..|+||||+|+.+.+..- -... |..++.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln-C~~~~~~~pCg~C~sCr~i~~g~~~DvlEid 94 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN-CENAQHGEPCGVCQSCTQIDAGRYVDLLEID 94 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc-ccCCCCCCCCcccHHHHHHhccCccceEEEe
Confidence 3689999999999999988765 4689999999999999999988751 1100 11111221
Q ss_pred EcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--cccccccCCCCCCCCCcEEEE
Q 039262 215 VSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVF 292 (885)
Q Consensus 215 ~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iiv 292 (885)
.+....+. ..+++++... ..-..+++-++|+|++.... ....+...+. .....+++|+
T Consensus 95 aAs~~gVd-~IRelle~a~------------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fIL 154 (709)
T PRK08691 95 AASNTGID-NIREVLENAQ------------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFIL 154 (709)
T ss_pred ccccCCHH-HHHHHHHHHH------------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEE
Confidence 11111111 1111111100 00012456689999996432 2333444443 2234556666
Q ss_pred ecCCh-hHhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 293 TTRSE-EVCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 293 TtR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+|.+. .+.. ..+....+.+.+++.++....+.+.+.......+ .+....|++.++|.+.-+
T Consensus 155 aTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 155 ATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHH
Confidence 66443 3321 1223456889999999999999988754432222 446789999999988544
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=6.5e-05 Score=73.96 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=93.7
Q ss_pred HHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCC-------------------CCCCEEEEEEEcC-ccCHHHH
Q 039262 166 RVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSP-------------------TNFDVVIWVVVSK-DLRLENI 224 (885)
Q Consensus 166 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s~-~~~~~~~ 224 (885)
.+.+.+..+.. ..+.++|+.|+||||+|+.+.+...... .+.|. .++.... .... +.
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~-~~ 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKV-DQ 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCH-HH
Confidence 45566666655 5799999999999999999988862110 12222 2221111 1111 11
Q ss_pred HHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhh
Q 039262 225 QEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCG 301 (885)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~ 301 (885)
.+++.+.+... -..+.+-++|+||+... ...+.+...+. .....+.+|++|++. .+..
T Consensus 81 i~~i~~~~~~~------------------~~~~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~ 141 (188)
T TIGR00678 81 VRELVEFLSRT------------------PQESGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLP 141 (188)
T ss_pred HHHHHHHHccC------------------cccCCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChH
Confidence 11222222110 01245668999998543 33455555554 344566677766654 2222
Q ss_pred h-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 302 L-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 302 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
. ......+.+.+++.++..+.+.+. + . + .+.+..|++.++|.|..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 1 123467899999999999988876 2 1 1 35688999999998853
No 98
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=2.7e-05 Score=83.64 Aligned_cols=196 Identities=10% Similarity=0.066 Sum_probs=111.5
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCC-CCCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSP-TNFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
..++|.++..+.+...+..+.. ..+.|+|..|+||||+|..+++...... ..+... ............+.|...-
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCC
Confidence 4689999999999999988754 4699999999999999999998862110 001111 0011111112333333221
Q ss_pred C-------CCCccc-----cccchhHHHHHHHHHhc-----cCcEEEEEccccch--hcccccccCCCCCCCCCcE-EEE
Q 039262 233 G-------LVNDTW-----KNRRTEQKALDIFRNLK-----EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSK-VVF 292 (885)
Q Consensus 233 ~-------~~~~~~-----~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~-iiv 292 (885)
. ...+.. .....++ +..+.+++. +++-++|+|++... .....+...+. ....... |++
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiLi 177 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFILI 177 (351)
T ss_pred CCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEEE
Confidence 0 000000 1112232 234444443 46679999999643 23333433343 2223444 445
Q ss_pred ecCChhHhhhc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 293 TTRSEEVCGLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 293 TtR~~~v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
|++...+.... .....+++.+++.++..+++.+...... -..+....+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 54444332222 2346899999999999999987432111 113446789999999998665443
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.2e-05 Score=87.47 Aligned_cols=194 Identities=15% Similarity=0.176 Sum_probs=108.6
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCC-CCCCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGS-PTNFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
+++||-+..+..|.+++..++. ..+.++|..|+||||+|+.+++..--. .........-.+ ..-...+.|...-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~~i~~g~ 91 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACRDIDSGR 91 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHHHHHcCC
Confidence 3689999999999999988766 466899999999999999998775100 000000000001 1111122221100
Q ss_pred CCCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe-cCChhHh-
Q 039262 233 GLVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT-TRSEEVC- 300 (885)
Q Consensus 233 ~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT-tR~~~v~- 300 (885)
.... +.......++.. .+.+.. .++.-++|+|+|... ..+..+...+. ......++|++ |....+.
T Consensus 92 h~D~~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 92 FVDYTELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCceeecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhH
Confidence 0000 000011111111 111111 234558999999643 34555555554 33345556554 4444443
Q ss_pred hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 301 GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 301 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
........+++++++.++....+.+.+.......+ .+....|++.++|.+--+.
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 22334578999999999999999988754432222 3457889999999775543
No 100
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.6e-05 Score=87.89 Aligned_cols=194 Identities=13% Similarity=0.134 Sum_probs=107.8
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+++... +.+ |.... ....-...+.+.....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~--C~~-----~~~~~-~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN--CLN-----PKDGD-CCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc--CCC-----CCCCC-CCcccHHHHHHHcCCC
Confidence 4689999999999999877654 4688999999999999999998862 111 11100 0111111111111110
Q ss_pred CCCccc---cccchhHHHHHHHHH-----hccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEE-ecCChhHhh-
Q 039262 234 LVNDTW---KNRRTEQKALDIFRN-----LKEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCG- 301 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~- 301 (885)
...-.. .....++. +.+.+. ..+++=++|+|++.. ...+..+...+. .....+.+|+ |+....+..
T Consensus 88 ~DiieIdaas~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 88 VDIVELDAASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CceEEeccccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHH
Confidence 000000 00111111 111111 112344799999864 234445544443 2334555554 444444432
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHHH
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIGR 361 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~~ 361 (885)
.......+++.+++.++....+...+.......+ .+.+..+++.++|.+- |+..+-.
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2234567899999999999999887743322222 3457889999999664 4444443
No 101
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.16 E-value=4.9e-06 Score=87.83 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=64.2
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHcCCCCccccccc
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL--RLENIQEAIGEKIGLVNDTWKNRR 243 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~ 243 (885)
+++.+.- ..-...+|+|++|+||||||+++|+... ..+|+.++||.+.+.. .+.++++.|...+-.. .++...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s--t~d~~~ 234 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS--TFDEPA 234 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE--CCCCCH
Confidence 3444432 3445789999999999999999999983 3499999999999887 7778888886322111 111111
Q ss_pred hh-----HHHHHHHHH--hccCcEEEEEcccc
Q 039262 244 TE-----QKALDIFRN--LKEKKFVLLLDDIW 268 (885)
Q Consensus 244 ~~-----~~~~~l~~~--l~~k~~LlVlDdv~ 268 (885)
.. ..+....++ -.++.++|++|++-
T Consensus 235 ~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 235 ERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 11 111111111 35799999999983
No 102
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.16 E-value=1.8e-05 Score=80.62 Aligned_cols=170 Identities=12% Similarity=0.074 Sum_probs=95.8
Q ss_pred ccchHHHH-HHHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 157 VVGLQSQL-ERVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 157 ~vGr~~~~-~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
+.|..... ..+.++... ...+.+.|+|..|+|||+||+.+++... .... ...+++...... . +
T Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~-~~~~i~~~~~~~------~----~-- 85 (227)
T PRK08903 21 VAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADAS--YGGR-NARYLDAASPLL------A----F-- 85 (227)
T ss_pred ccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--hCCC-cEEEEehHHhHH------H----H--
Confidence 33554443 444444332 3456899999999999999999998762 1222 344554433110 0 0
Q ss_pred CCccccccchhHHHHHHHHHhccCcEEEEEccccchhc--ccccccCCCCCCCCCc-EEEEecCChhHhh--------hc
Q 039262 235 VNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD--LSKVGIPLPGRLNNKS-KVVFTTRSEEVCG--------LM 303 (885)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~l~~~~~~gs-~iivTtR~~~v~~--------~~ 303 (885)
... ...-++|+||+..... ...+...+......+. .+|+|++...... .+
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 011 1234788999954321 1122222210112333 4667766543221 22
Q ss_pred cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHh
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAM 363 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l 363 (885)
.....+++.++++++-..++.+.+.......+ ++....+++.+.|.+..+..+-..+
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 23467899999998877777765432222222 4567888889999998886666544
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=3.2e-05 Score=85.46 Aligned_cols=196 Identities=12% Similarity=0.141 Sum_probs=109.8
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE-EcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV-VSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 232 (885)
.+++|.+..++.|.+++..+... .+.++|+.|+||||+|+.+++... -....+...|.. .......-...+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~-c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhc-CCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 46899999999999999887665 488999999999999999998862 111111111110 000111111111221111
Q ss_pred CCCCccc---cccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEec-CChhHhh
Q 039262 233 GLVNDTW---KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTT-RSEEVCG 301 (885)
Q Consensus 233 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~ 301 (885)
....... .....++.. .+.+.+ .+++-++|+|++... ..+..+...+. .....+.+|++| +...+..
T Consensus 95 ~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHH
Confidence 1000000 001112222 222333 245568899998643 34555555554 334566665554 4444433
Q ss_pred hc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 302 LM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 302 ~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.. .....+++.++++++....+...+.......+ .+.+..|++.++|.+--+
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 22 23457899999999999888887643321122 456899999999977544
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.09 E-value=2.2e-05 Score=78.86 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=99.3
Q ss_pred cccchH-HHHHHHHHHHccC---CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 156 TVVGLQ-SQLERVWRCLVQE---PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 156 ~~vGr~-~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.++|-. +..-.....+.++ ....+.|+|..|+|||.|.+++++...+ ...-..+++++. .+....+...
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~-~~~~~~v~y~~~------~~f~~~~~~~ 82 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK-QHPGKRVVYLSA------EEFIREFADA 82 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH-HCTTS-EEEEEH------HHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh-ccccccceeecH------HHHHHHHHHH
Confidence 445642 3333334444332 3457899999999999999999998721 111224666643 4455555554
Q ss_pred cCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh---cccc-cccCCCCCCCCCcEEEEecCCh---------h
Q 039262 232 IGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV---DLSK-VGIPLPGRLNNKSKVVFTTRSE---------E 298 (885)
Q Consensus 232 l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~-~~~~l~~~~~~gs~iivTtR~~---------~ 298 (885)
+... ....+++.+.+ -=+|++||+.... .|++ +...+......|.+||+|++.. +
T Consensus 83 ~~~~-----------~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~ 150 (219)
T PF00308_consen 83 LRDG-----------EIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPD 150 (219)
T ss_dssp HHTT-----------SHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HH
T ss_pred HHcc-----------cchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChh
Confidence 4211 11234444443 3488999996432 2222 1111111123567899999653 2
Q ss_pred HhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 299 VCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 299 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
+.+.+...-.+++++.++++-.+++.+.+.......+ ++++.-|++.+.+..-.+..
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHH
Confidence 3344455668999999999999999998854443333 45677777777766555543
No 105
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00016 Score=82.19 Aligned_cols=196 Identities=15% Similarity=0.147 Sum_probs=111.1
Q ss_pred CcccchHHHHHHHHHHHccCC-CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEP-AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..++.|.+.+..+. ...+.++|+.|+||||+|+.+++... -....+. .....-...+.|.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~-C~~~~~~-------~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN-CETAPTG-------EPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc-ccCCCCC-------CCCcccHHHHHHhcCCC
Confidence 368999999999999888765 46788999999999999999998862 1110000 00011111111111100
Q ss_pred CCCccc---cccchhHHHHHHHHH-----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCC-hhHhhh
Q 039262 234 LVNDTW---KNRRTEQKALDIFRN-----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRS-EEVCGL 302 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 302 (885)
...-.. .....++ +..+.+. ..+++-++|+|++... .....+...+. .......+|++|.+ ..+...
T Consensus 88 pDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 88 VDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHH
Confidence 000000 0011111 1112222 2355679999999643 33455555553 22344555555544 444322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch-hHHHHHHHHh
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP-LALITIGRAM 363 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-Lai~~~~~~l 363 (885)
......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 233457899999999999999887644332222 456788999999965 6777766554
No 106
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.07 E-value=4.5e-07 Score=91.94 Aligned_cols=120 Identities=23% Similarity=0.193 Sum_probs=79.2
Q ss_pred hcCCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCC----Cccccchh-------hhccCCCcEEecCCccc
Q 039262 558 FQCMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDT----NVAVLPKE-------LNALVNLKCLNLENAWM 621 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~----~i~~Lp~~-------l~~L~~L~~L~l~~~~~ 621 (885)
...+..+..|+||+| .+.. +.+.+.+.++|+.-++|+- ...++|+. +...++|++|+|+.|-.
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 567889999999999 5543 5556777889999999874 23555654 34556999999999954
Q ss_pred cccccc---hhhcCCCCCcEEEeecccccCCCCcccc------cchhhhcCCCCccEEEEEecccc
Q 039262 622 LTVIPR---RLISSFSSLHVLRMFGIGYSSSDGIIRE------GELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 622 l~~lp~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
-...++ .+++++++|++|++.+|......+..-. .......+-++|+++....|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 333332 2467899999999998876543210000 01222345567777777766543
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=9.5e-05 Score=81.34 Aligned_cols=179 Identities=12% Similarity=0.153 Sum_probs=103.8
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCC-----CCCCCEE-EEEEEcCccCHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGS-----PTNFDVV-IWVVVSKDLRLENIQEA 227 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~-~wv~~s~~~~~~~~~~~ 227 (885)
.+++|.+..++.+.+.+..+.. +.+.++|+.|+||||+|+.+.+..... ...|... +-+......... ..+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~~ 95 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD-DIRN 95 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH-HHHH
Confidence 3589999999999999987654 488899999999999999998876210 1112211 111111111111 1112
Q ss_pred HHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEec-CChhHhh-hc
Q 039262 228 IGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTT-RSEEVCG-LM 303 (885)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTt-R~~~v~~-~~ 303 (885)
+.+.+... -..+++-++|+|++... ..+..+...+. .....+.+|++| ....+.. ..
T Consensus 96 l~~~~~~~------------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 96 LIDQVRIP------------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHhhc------------------cccCCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHH
Confidence 22221100 01234558999998543 23444433343 223345555544 4333322 22
Q ss_pred cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.....++..++++++....+...+.......+ .+....+++.++|.+-.+
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 33457899999999999999887754332222 356888889999866533
No 108
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=8.4e-05 Score=84.77 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=111.0
Q ss_pred CcccchHHHHHHHHHHHccCCCcE-EEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGI-VGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.|.+++..+.... +.++|+.|+||||+|+.+++..-- ....+ +-.++.. ...+.|...-+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c-~~~~~---~~pCg~C----~~C~~i~~~~~ 84 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC-AQGPT---ATPCGVC----ESCVALAPNGP 84 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-ccCCC---CCccccc----HHHHHhhcccC
Confidence 468999999999999998876654 689999999999999999987620 01000 0011111 11111111000
Q ss_pred CCC-----ccccccchhHHHHHHHHH-----hccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEE-ecCChhHh
Q 039262 234 LVN-----DTWKNRRTEQKALDIFRN-----LKEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVF-TTRSEEVC 300 (885)
Q Consensus 234 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~ 300 (885)
... +.......++. ..+.+. ..+++-++|+|++.. ......+...+. .......+|+ ||....+.
T Consensus 85 ~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll 162 (584)
T PRK14952 85 GSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVL 162 (584)
T ss_pred CCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhH
Confidence 000 00000111111 112211 124556889999853 234445555554 3334555554 55555544
Q ss_pred hh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHHHHhc
Q 039262 301 GL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIGRAMS 364 (885)
Q Consensus 301 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~~~l~ 364 (885)
.. ......+++.+++.++..+.+.+.+.......+ .+....|++.++|.+- |+..+-.++.
T Consensus 163 ~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 163 PTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred HHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 32 234578999999999999898887644332222 3457888999999774 5555554443
No 109
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.06 E-value=5.7e-06 Score=86.73 Aligned_cols=289 Identities=18% Similarity=0.188 Sum_probs=173.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..+.+.++|.|||||||++-++.. . ...|. .+.++....-.+...+.-.....++.... +-+.....+..
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~-----~g~~~~~~~~~ 83 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ-----PGDSAVDTLVR 83 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccc-----cchHHHHHHHH
Confidence 467899999999999999999988 4 34554 66666666666666666666666766431 22233445667
Q ss_pred HhccCcEEEEEccccchhc-ccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEeccCChh-hHHHHHHHHhcCCc
Q 039262 254 NLKEKKFVLLLDDIWERVD-LSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKVECLSHN-DAWELFRQKVGGET 331 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~~~~~-~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~~~~ 331 (885)
...++|.++|+||.....+ -......+. .+...-.|+.|+|... .+.....+.+.+|+.. ++.++|...+....
T Consensus 84 ~~~~rr~llvldncehl~~~~a~~i~all-~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 84 RIGDRRALLVLDNCEHLLDACAALIVALL-GACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHhhhhHHHHhcCcHHHHHHHHHHHHHHH-ccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHHHHHHHHhc
Confidence 7788999999999743211 011111121 2334456788888652 2234556778888765 78999887763221
Q ss_pred --cCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHH----HHHHhccCCCCCCCCcchhhhHHhhhcCCC
Q 039262 332 --LNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYA----IQVLRTSSSQFPGLGNEVYPLLKFSYDNLP 405 (885)
Q Consensus 332 --~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~----~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~ 405 (885)
.............|.++.+|.|++|...++..+.- ...+-... ...+........--+......+..||.-|.
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt 238 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT 238 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh
Confidence 11223335678999999999999999988887653 22222111 112222111111112367788999999998
Q ss_pred hhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHHHHHHccccccc---cCCeEEehHHHHHH
Q 039262 406 NETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVGTLVHACLLEEV---EEDEVQMHDVIRDM 482 (885)
Q Consensus 406 ~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~d~ 482 (885)
. -.+--|.-++.|...+... ...|.+.|-... ......-..+..+++.+++... +...|+.-+-++.|
T Consensus 239 g-we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Y 309 (414)
T COG3903 239 G-WERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRY 309 (414)
T ss_pred h-HHHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 8 6888888888887765443 334444442211 0112233345666777776543 23334444445555
Q ss_pred HHHH
Q 039262 483 ALWL 486 (885)
Q Consensus 483 a~~~ 486 (885)
+..+
T Consensus 310 alae 313 (414)
T COG3903 310 ALAE 313 (414)
T ss_pred HHHH
Confidence 5433
No 110
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=3.8e-07 Score=101.87 Aligned_cols=82 Identities=26% Similarity=0.311 Sum_probs=36.5
Q ss_pred CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCc
Q 039262 533 VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLK 612 (885)
Q Consensus 533 ~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~ 612 (885)
...+++|..|++.+| .+..+... +..|++|++|+|++| .|+.+. .+..+..|+.|++++|.|..++. +..+.+|+
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLK 165 (414)
T ss_pred cccccceeeeecccc-chhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhccC-Cccchhhh
Confidence 344444555555544 33333321 334445555555554 444443 23444445555555554444432 22344444
Q ss_pred EEecCCc
Q 039262 613 CLNLENA 619 (885)
Q Consensus 613 ~L~l~~~ 619 (885)
.+++++|
T Consensus 166 ~l~l~~n 172 (414)
T KOG0531|consen 166 LLDLSYN 172 (414)
T ss_pred cccCCcc
Confidence 4444444
No 111
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=7.4e-05 Score=85.71 Aligned_cols=194 Identities=13% Similarity=0.108 Sum_probs=109.9
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC--EEEEEEEcCccCHHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFD--VVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.+++|.+..++.|.+.+..++.. -+.++|+.|+||||+|+.+++...- ..... ...+-.+... .-.+.|...
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c-~~~~~~~~~~~~~cg~c----~~C~~i~~g 98 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY-EGPDGDGGPTIDLCGVG----EHCQAIMEG 98 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc-CCccccCCCccccCccc----HHHHHHhcC
Confidence 46899999999999999887654 6899999999999999999987620 10000 0000001111 111222221
Q ss_pred cCCCCcc---ccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHh
Q 039262 232 IGLVNDT---WKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVC 300 (885)
Q Consensus 232 l~~~~~~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~ 300 (885)
-....-. ......++.. .+.+.+ .+++-++|+|++... .....+...+. ....++.+|+ ||....+.
T Consensus 99 ~h~Dv~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll 176 (598)
T PRK09111 99 RHVDVLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVP 176 (598)
T ss_pred CCCceEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhh
Confidence 1110000 0011122211 122222 234558999998543 33444544443 3344566655 44444443
Q ss_pred hhc-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 301 GLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 301 ~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
..+ .....+++.+++.++....+.+.+.......+ .+....|++.++|.+.-+..
T Consensus 177 ~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 177 VTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 222 23467899999999999999988754332222 35678899999998865543
No 112
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=6e-05 Score=85.79 Aligned_cols=183 Identities=14% Similarity=0.176 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCC------------------CCCCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSP------------------TNFDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv~~ 215 (885)
.+++|-+..++.+.+++..+... .+.++|..|+||||+|+.+++...-.. +.|...+++..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 46899999999999999887665 568999999999999999988761000 01111222222
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
+....+.. .+++++..... -..+++-++|+|++... .....+...+. .....+.+|++
T Consensus 96 ~~~~~vd~-ir~l~~~~~~~------------------p~~~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~ 155 (527)
T PRK14969 96 ASNTQVDA-MRELLDNAQYA------------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILA 155 (527)
T ss_pred cccCCHHH-HHHHHHHHhhC------------------cccCCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEE
Confidence 11111111 11222211100 01245669999999643 23444444444 33345556655
Q ss_pred c-CChhHhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHH
Q 039262 294 T-RSEEVCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIG 360 (885)
Q Consensus 294 t-R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~ 360 (885)
| ..+.+.. .......+++.+++.++....+.+.+.......+ .+....|++.++|.+- |+..+-
T Consensus 156 t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~---~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 156 TTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFD---ATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred eCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 5 4443321 1223467899999999999988887743322212 3456889999999775 444443
No 113
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=4.7e-06 Score=59.17 Aligned_cols=39 Identities=31% Similarity=0.471 Sum_probs=21.0
Q ss_pred cccEEEecCCCccccCchhHhccccCCEeecCCCCccccc
Q 039262 563 RLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLP 602 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp 602 (885)
+|++|++++| .++.+|..+++|++|++|++++|+|+.+|
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4555555555 55555555555555555555555555443
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=9.2e-05 Score=87.90 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=109.2
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.|...+..+.+. .+.++|..|+||||+|+.+.+...-. ...... .+..+ ...+.|...-.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~-~~~~~~---pCg~C----~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCV-EGPTST---PCGEC----DSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcc-cCCCCC---CCccc----HHHHHHHcCCC
Confidence 35899999999999999887665 57899999999999999998887210 110000 00000 00111111000
Q ss_pred CCC-----ccccccchhHHHHHHHHH-----hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHh
Q 039262 234 LVN-----DTWKNRRTEQKALDIFRN-----LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVC 300 (885)
Q Consensus 234 ~~~-----~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~ 300 (885)
... +.......++.. .+++. ..+++-++|||++... .....+...+. .....+.+|+ ||....+.
T Consensus 87 ~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred CCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhh
Confidence 000 000001111111 12221 2345568899999643 33445555554 3334555555 44444454
Q ss_pred hh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH-HHHHHH
Q 039262 301 GL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL-ITIGRA 362 (885)
Q Consensus 301 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai-~~~~~~ 362 (885)
.. ......|++..++.++...++.+.+.......+ .+....|++.++|.+..+ ..+-.+
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al~eLEKL 225 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSLSVLDQL 225 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 32 234568899999999999998887643332222 345678999999988433 444333
No 115
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.03 E-value=1.4e-05 Score=84.97 Aligned_cols=92 Identities=17% Similarity=0.150 Sum_probs=62.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHcCCCC-ccccc--cchh-HHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD--LRLENIQEAIGEKIGLVN-DTWKN--RRTE-QKA 248 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~-~~~~~--~~~~-~~~ 248 (885)
.-..++|+|.+|+|||||++.+++... .++|+..+||.+.+. .++.++++.+...+-... +.... .... ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 456899999999999999999999983 448999999999866 789999999854432211 00000 0000 111
Q ss_pred HHHHH-HhccCcEEEEEcccc
Q 039262 249 LDIFR-NLKEKKFVLLLDDIW 268 (885)
Q Consensus 249 ~~l~~-~l~~k~~LlVlDdv~ 268 (885)
..... .-.+++++|++|++.
T Consensus 245 e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChh
Confidence 11111 135799999999984
No 116
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=1.3e-05 Score=93.85 Aligned_cols=105 Identities=26% Similarity=0.317 Sum_probs=81.8
Q ss_pred cccEEEecCCCccccCchhHhccccCCEeecCCCCcc-ccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEe
Q 039262 563 RLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVA-VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRM 641 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 641 (885)
.++.|+|++|..-..+|..++.+.+|++|+|++|.+. .+|..++.+++|+.|+|++|.....+|.. ++++++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 4788999999433478999999999999999999985 88999999999999999999655577865 899999999999
Q ss_pred ecccccCCCCcccccchhhhcCC-CCccEEEEEec
Q 039262 642 FGIGYSSSDGIIREGELEELLGL-KYLEVLSLTLN 675 (885)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~ 675 (885)
.+|.+... .+..+..+ .++..+++.+|
T Consensus 498 s~N~l~g~-------iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 498 NGNSLSGR-------VPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred cCCccccc-------CChHHhhccccCceEEecCC
Confidence 98876542 23334332 34455555544
No 117
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.6e-07 Score=91.24 Aligned_cols=82 Identities=26% Similarity=0.200 Sum_probs=45.7
Q ss_pred cccEEEecCCCcccc--CchhHhccccCCEeecCCCCccc-cchhhhccCCCcEEecCCccccccccc-hhhcCCCCCcE
Q 039262 563 RLKVLNLSGAKQLFY--FPLVISKLVSLQHLDLSDTNVAV-LPKELNALVNLKCLNLENAWMLTVIPR-RLISSFSSLHV 638 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~~-Lp~~l~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~ 638 (885)
.|++||||+. .|+. +---++.+.+|+.|.|.++.+.. +-..+.+-.+|+.|+|+.|..++.... -++.+++.|..
T Consensus 186 Rlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4777777776 5542 33345566777777777766532 234455666777777777654443321 12344555555
Q ss_pred EEeeccc
Q 039262 639 LRMFGIG 645 (885)
Q Consensus 639 L~l~~~~ 645 (885)
|++..|.
T Consensus 265 LNlsWc~ 271 (419)
T KOG2120|consen 265 LNLSWCF 271 (419)
T ss_pred cCchHhh
Confidence 5554443
No 118
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.96 E-value=0.00019 Score=75.27 Aligned_cols=154 Identities=12% Similarity=0.123 Sum_probs=82.1
Q ss_pred cccchHHHHHHHHHHHc---c------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 156 TVVGLQSQLERVWRCLV---Q------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.++|.+..+++|.+... . ....-+.++|.+|+||||+|+.++..... .+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH---
Confidence 46777766666544321 1 01236889999999999999888776621 12222123444442
Q ss_pred HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch-----------hcccccccCCCCCCCCCcE
Q 039262 221 LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER-----------VDLSKVGIPLPGRLNNKSK 289 (885)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 289 (885)
.+ +...+... +.... ..+.+.. ..-+|+||++... ..+..+...+. ....+.+
T Consensus 99 -~~----l~~~~~g~-------~~~~~-~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~ 162 (284)
T TIGR02880 99 -DD----LVGQYIGH-------TAPKT-KEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLV 162 (284)
T ss_pred -HH----HhHhhccc-------chHHH-HHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 11 22222111 11111 1122222 2358889998521 11233333333 3344567
Q ss_pred EEEecCChhHhhhcc--------CcceEEeccCChhhHHHHHHHHhcC
Q 039262 290 VVFTTRSEEVCGLME--------AHKKFKVECLSHNDAWELFRQKVGG 329 (885)
Q Consensus 290 iivTtR~~~v~~~~~--------~~~~~~l~~L~~~e~~~Lf~~~~~~ 329 (885)
||.++.......... ....+.+++++.+|...++...+..
T Consensus 163 vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 163 VILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred EEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 777765443321111 1356899999999999999887743
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=7e-05 Score=82.34 Aligned_cols=171 Identities=18% Similarity=0.256 Sum_probs=97.9
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
+++.|+++.++++.+.+.- ...+-|.++|++|+|||++|+.+++.. ... |+.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~-----~i~v~~---- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NAT-----FIRVVG---- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCC-----EEEeeh----
Confidence 3578999999999887632 245679999999999999999999986 222 233221
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh------------c----ccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV------------D----LSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 283 (885)
..+ ..... +.. ......+.+.. ...+.+|+|||++... . +..+...+.. .
T Consensus 199 ~~l----~~~~~-------g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 SEL----VQKFI-------GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HHH----hHhhc-------cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 001 11222222222 3467899999996421 0 1111111110 1
Q ss_pred CCCCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 284 LNNKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
...+..||.||...+.... + .-...+.+++.+.++-.++|+.++.........+ ...+++.+.|.-
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1235677777765433211 1 1245689999999999999998875443222222 456677777653
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=6.1e-05 Score=84.05 Aligned_cols=166 Identities=11% Similarity=0.107 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
..+.|+|..|+|||+|++++.+.... ...--.+++++. .++...+...+.... .....+++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~------~~f~~~~~~~l~~~~---------~~~~~~~~~~~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSG------DEFARKAVDILQKTH---------KEIEQFKNEIC 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHHHHhh---------hHHHHHHHHhc
Confidence 56899999999999999999997521 111224455543 456666666553210 11223444444
Q ss_pred cCcEEEEEccccchh----cccccccCCCCCCCCCcEEEEecCCh---------hHhhhccCcceEEeccCChhhHHHHH
Q 039262 257 EKKFVLLLDDIWERV----DLSKVGIPLPGRLNNKSKVVFTTRSE---------EVCGLMEAHKKFKVECLSHNDAWELF 323 (885)
Q Consensus 257 ~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 323 (885)
. .-+||+||+.... ..+.+...+......|..||+|+... ++...+...-.+.+++++.++-.+++
T Consensus 206 ~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 Q-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAII 284 (450)
T ss_pred c-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHH
Confidence 3 4488899995321 12223222221123455788887643 23334445567899999999999999
Q ss_pred HHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 324 RQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
.+++...... ..--+++..-|++.++|.|-.+..+.
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 9988533210 01125678999999999998775444
No 121
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=1.1e-05 Score=57.34 Aligned_cols=41 Identities=41% Similarity=0.588 Sum_probs=34.5
Q ss_pred ccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccc
Q 039262 586 VSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPR 627 (885)
Q Consensus 586 ~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~ 627 (885)
++|++|++++|+|+.+|..+++|++|++|++++| .++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4799999999999999988999999999999999 5666664
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.94 E-value=0.00027 Score=79.38 Aligned_cols=182 Identities=13% Similarity=0.184 Sum_probs=107.5
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCC-CCC----------------CC-EEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGS-PTN----------------FD-VVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~----------------f~-~~~wv~~ 215 (885)
.+++|-+..++.+...+..+... .+.++|..|+||||+|+.+++..... ... +. .++.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 36899999999999999877665 56899999999999999988875110 000 00 1122211
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEe
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFT 293 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivT 293 (885)
+....+..+ +++++.... .-..+++-++|+|++... .....+...+. .....+++|++
T Consensus 94 as~~gId~I-Relie~~~~------------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ 153 (535)
T PRK08451 94 ASNRGIDDI-RELIEQTKY------------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILA 153 (535)
T ss_pred ccccCHHHH-HHHHHHHhh------------------CcccCCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEE
Confidence 111111111 111111100 001144568899999643 33444444443 33455666666
Q ss_pred cCCh-hHhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 294 TRSE-EVCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 294 tR~~-~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
|.+. .+.. .......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+.-+...
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 6553 2221 2223567899999999999999887754432222 456789999999988655443
No 123
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.93 E-value=7.6e-05 Score=80.94 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=57.4
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (885)
.++++.+..++.+...|.. .+.|.++|++|+|||++|+.+++.. .....|+.+.||++++..+..+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhc
Confidence 3578889999999998875 4578889999999999999999987 4456788999999999887666654
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.00023 Score=82.15 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=106.5
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.|...+..++. +.+.++|+.|+||||+|+.++...- ..+.. ..+-.+..+ ... .+
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln--C~~~~-~~~~pC~~C-------~~~---~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN--CSHKT-DLLEPCQEC-------IEN---VN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc--ccccC-CCCCchhHH-------HHh---hc
Confidence 3589999999999999987654 4568999999999999999988751 11100 000000000 000 00
Q ss_pred CCCc-----cccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE-EecCChhHh
Q 039262 234 LVND-----TWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV-FTTRSEEVC 300 (885)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~ 300 (885)
...+ .......++ ++.+.+.+ .+++-++|+|++... ..+..+...+. .....+.+| +||+...+.
T Consensus 85 ~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl 162 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIP 162 (725)
T ss_pred CCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhh
Confidence 0000 000011111 12222222 245669999998532 34455544443 223344444 555555554
Q ss_pred hh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHH
Q 039262 301 GL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIG 360 (885)
Q Consensus 301 ~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~ 360 (885)
.. ......+++.+++.++....+...+.......+ .+.+..|++.++|.+- |+..+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 334568999999999999999886643321222 3457889999999765 444433
No 125
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00022 Score=81.98 Aligned_cols=200 Identities=14% Similarity=0.163 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE-EcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV-VSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~~l 232 (885)
.+++|-+..+..|.+.+..+... .+.++|+.|+||||+|+.+++... -....+...|.. +......-...+.+...-
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~-c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~ 94 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVN-CQRMIDDPVYLQEVTEPCGECESCRDFDAGT 94 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC-CCCcCCccccccccCCCCccCHHHHHHhccC
Confidence 46899999999999998877664 488999999999999999988862 111111011111 000111111111111111
Q ss_pred CCCCccc---cccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhh
Q 039262 233 GLVNDTW---KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCG 301 (885)
Q Consensus 233 ~~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~ 301 (885)
....... .....++.. .+.+.+ .+++-++|+|++... ...+.+...+. .....+.+|+ |++...+..
T Consensus 95 ~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 95 SLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred CCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhH
Confidence 0000000 011122222 222222 244558899998643 33445555554 3334455554 544444433
Q ss_pred h-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHH
Q 039262 302 L-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIG 360 (885)
Q Consensus 302 ~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~ 360 (885)
. ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..- |+..+-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 2 334678999999999998888876643221122 4468889999999654 444433
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00023 Score=82.41 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=108.6
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcC--------------------CCCCCCEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLG--------------------SPTNFDVVIWV 213 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~wv 213 (885)
.+++|.+..++.|.+.+..+... .+.++|..|+||||+|+.++....- ...+|+. ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~~l 95 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-HEL 95 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-EEe
Confidence 36899999999999999887665 5789999999999999998887510 0113332 222
Q ss_pred EEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE
Q 039262 214 VVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV 291 (885)
Q Consensus 214 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (885)
..+....+..+. ++++++... -..+++=++|+|++... ..+..+...+. ....++.+|
T Consensus 96 d~~~~~~vd~Ir-~li~~~~~~------------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifI 155 (614)
T PRK14971 96 DAASNNSVDDIR-NLIEQVRIP------------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFI 155 (614)
T ss_pred cccccCCHHHHH-HHHHHHhhC------------------cccCCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEE
Confidence 222222222211 122221110 01234558899998643 34555555554 333456555
Q ss_pred E-ecCChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 292 F-TTRSEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 292 v-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+ ||+...+... ......+++.+++.++....+.+.+.......+ .+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 5 5555555432 234567899999999999999887754332222 345788999999976544
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=4.3e-06 Score=82.81 Aligned_cols=56 Identities=29% Similarity=0.426 Sum_probs=26.0
Q ss_pred CCCcccEEEecCCCcccc---CchhHhccccCCEeecCCCCc----cccchhhhccCCCcEEecCCc
Q 039262 560 CMPRLKVLNLSGAKQLFY---FPLVISKLVSLQHLDLSDTNV----AVLPKELNALVNLKCLNLENA 619 (885)
Q Consensus 560 ~l~~Lr~L~Ls~~~~i~~---lp~~i~~L~~L~~L~L~~~~i----~~Lp~~l~~L~~L~~L~l~~~ 619 (885)
.+.+++.|||.+| .|+. +-..+.+|++|++|+|++|.+ +.+| -.+.||++|-|.|+
T Consensus 69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGT 131 (418)
T ss_pred Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCC
Confidence 4445555555555 3332 222234455555555555532 3333 23345555555554
No 128
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.91 E-value=0.00013 Score=75.84 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=78.9
Q ss_pred cccchHHHHHHHHHHHc---c------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 156 TVVGLQSQLERVWRCLV---Q------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.++|.+..+++|.+... - .....+.++|++|+||||+|+.+++..... +.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH--
Confidence 47888877766654321 0 134568899999999999999998875211 11111122333221
Q ss_pred HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch----------hcccccccCCCCCCCCCcEE
Q 039262 221 LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER----------VDLSKVGIPLPGRLNNKSKV 290 (885)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~i 290 (885)
++ ....- ..... ....+.+... .-+|++|++..- ...+.+...+. .......+
T Consensus 84 --~l----~~~~~-------g~~~~-~~~~~~~~a~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~v 146 (261)
T TIGR02881 84 --DL----VGEYI-------GHTAQ-KTREVIKKAL--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVL 146 (261)
T ss_pred --Hh----hhhhc-------cchHH-HHHHHHHhcc--CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEE
Confidence 11 11110 00111 1111112111 348899999641 12233333333 22233355
Q ss_pred EEecCChhHhh------hc-c-CcceEEeccCChhhHHHHHHHHhcC
Q 039262 291 VFTTRSEEVCG------LM-E-AHKKFKVECLSHNDAWELFRQKVGG 329 (885)
Q Consensus 291 ivTtR~~~v~~------~~-~-~~~~~~l~~L~~~e~~~Lf~~~~~~ 329 (885)
|+++...+... .. . ....+.+++++.+|-.+++.+.+..
T Consensus 147 ila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 147 ILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred EecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 55554332211 01 1 1346789999999999999887753
No 129
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00032 Score=78.94 Aligned_cols=177 Identities=12% Similarity=0.140 Sum_probs=104.6
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCC--CC----------------CCCEEEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGS--PT----------------NFDVVIWVVV 215 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~--~~----------------~f~~~~wv~~ 215 (885)
..++|-+..+..+.+.+..+... .+.++|+.|+||||+|+.++...... .. .|...+++..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 35899999999999999876554 56789999999999999998875100 00 0111122211
Q ss_pred cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCc
Q 039262 216 SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKS 288 (885)
Q Consensus 216 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs 288 (885)
+... ..++ ...+.+.. .+++-++|+|++... .....+...+. ......
T Consensus 96 as~~-----------------------gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~ 150 (486)
T PRK14953 96 ASNR-----------------------GIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRT 150 (486)
T ss_pred ccCC-----------------------CHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCe
Confidence 1111 1111 11222222 245669999998643 23444444443 323344
Q ss_pred EEEE-ecCChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 289 KVVF-TTRSEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 289 ~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
.+|+ ||+...+... ......+.+.+++.++....+.+.+.......+ .+.+..|++.++|.+..+...
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4554 4444444322 233457899999999999988887643332222 345788889999977655433
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00034 Score=81.23 Aligned_cols=193 Identities=16% Similarity=0.173 Sum_probs=109.4
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..++.|..++..+.. ..+.++|..|+||||+|+.+++... -..... -..........+.|.....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-c~~~~~------~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-CTTNDP------KGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC------CCCCCccCHHHHHHhcCCC
Confidence 4689999999999998887655 4568999999999999999998761 100000 0001111122333322211
Q ss_pred CCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCC-hhHhhh
Q 039262 234 LVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRS-EEVCGL 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~ 302 (885)
... +.......++. ..+.+.+ .+++-++|+|++... ...+.+...+. .....+.+|++|.+ ..+...
T Consensus 89 ~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 89 VDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHH
Confidence 110 00001111111 1222222 245668999998533 33445544443 33345666665543 333322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
......+.+.+++.++....+...+.......+ .+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 223457889999999999988887754332222 356789999999988655433
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00036 Score=77.95 Aligned_cols=182 Identities=16% Similarity=0.184 Sum_probs=106.1
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCC--------------------CCCCEEEEE
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSP--------------------TNFDVVIWV 213 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~wv 213 (885)
.+++|.+..++.+.+.+..+.. ..+.++|..|+||||+|+.+++...... .+++ .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i 95 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEI 95 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEe
Confidence 4689999999999999987665 5688999999999999999988762100 0111 1111
Q ss_pred EEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE
Q 039262 214 VVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV 291 (885)
Q Consensus 214 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii 291 (885)
.......... .+.+.+.+. ..-..+++-++|+|++... ...+.+...+. ....+..+|
T Consensus 96 ~g~~~~gid~-ir~i~~~l~------------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~I 155 (451)
T PRK06305 96 DGASHRGIED-IRQINETVL------------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFF 155 (451)
T ss_pred eccccCCHHH-HHHHHHHHH------------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEE
Confidence 1101111111 111111110 0011255678899998543 23344444443 333455666
Q ss_pred EecC-ChhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHH
Q 039262 292 FTTR-SEEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIG 360 (885)
Q Consensus 292 vTtR-~~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~ 360 (885)
++|. ...+... ......+++.++++++....+...+.......+ .+.+..|++.++|.+- |+..+-
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 6553 3333222 233567899999999999988887643321222 4568889999999764 444443
No 132
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00087 Score=66.79 Aligned_cols=170 Identities=20% Similarity=0.219 Sum_probs=97.8
Q ss_pred CcccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
.+|+|-++.++++.=++.. +.+..|.++|++|.||||||.-+++.. .+ .+ -++-+.......-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-gv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-GV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-cC--Ce----EecccccccChhhHHHHH
Confidence 3689999988888666643 467789999999999999999999997 22 22 111111111111222222
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch---------hcccccccC-CCCCCCCC-----------c
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER---------VDLSKVGIP-LPGRLNNK-----------S 288 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~~~-l~~~~~~g-----------s 288 (885)
..+. .. =++.+|.+... ...+++..- .- ..+++ +
T Consensus 99 t~Le-----------------------~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~I-G~gp~Arsv~ldLppFT 153 (332)
T COG2255 99 TNLE-----------------------EG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIII-GKGPAARSIRLDLPPFT 153 (332)
T ss_pred hcCC-----------------------cC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEE-ccCCccceEeccCCCee
Confidence 2221 11 13334444211 001111000 00 11222 2
Q ss_pred EEEEecCChhHhhhccC--cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 289 KVVFTTRSEEVCGLMEA--HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 289 ~iivTtR~~~v~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
-|=-|||.-.+...+.. ..+.+++..+.+|-.+...+.+..-....+ ++.+.+|+++..|-|--..-+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHH
Confidence 23358887665443322 346789999999999999988743332222 456899999999999654433
No 133
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=5.1e-05 Score=81.25 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=38.4
Q ss_pred CCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCC-Cccccch
Q 039262 535 TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDT-NVAVLPK 603 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~-~i~~Lp~ 603 (885)
.|.+++.|++++| .+..+|. + -.+|+.|.+++|..++.+|..+ ..+|++|++++| .+..+|.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc
Confidence 4566777777776 5666652 1 1247777777766666666554 246777777766 5666664
No 134
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=3.1e-05 Score=82.87 Aligned_cols=82 Identities=18% Similarity=0.300 Sum_probs=60.8
Q ss_pred ccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeec
Q 039262 514 WEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDL 593 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (885)
+.++++|++++|.+..+|.++ ++|++|.+++|..+..+|..+ ..+|++|++++|..+..+|. +|+.|++
T Consensus 51 ~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPE------SVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCchh---hhhhhheEccCccccccccc------ccceEEe
Confidence 457889999998888887433 369999999987777777542 25899999999977888885 4667777
Q ss_pred CCCC---ccccchhhh
Q 039262 594 SDTN---VAVLPKELN 606 (885)
Q Consensus 594 ~~~~---i~~Lp~~l~ 606 (885)
+++. +..||.++.
T Consensus 120 ~~n~~~~L~~LPssLk 135 (426)
T PRK15386 120 KGSATDSIKNVPNGLT 135 (426)
T ss_pred CCCCCcccccCcchHh
Confidence 7654 567776544
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=97.88 E-value=0.00028 Score=73.90 Aligned_cols=154 Identities=12% Similarity=0.149 Sum_probs=81.8
Q ss_pred cccchHHHHHHHHHHH---cc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 156 TVVGLQSQLERVWRCL---VQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L---~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.++|.+..+++|.+.. .- .....+.++|.+|+||||+|+.+++.... .+.-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~-~g~~~~~~~~~v~~~-- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYK-LGYIKKGHLLTVTRD-- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHH-cCCCCCCceEEecHH--
Confidence 4677776666554432 10 12235889999999999999999886521 111111224444421
Q ss_pred HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch-----------hcccccccCCCCCCCCCcE
Q 039262 221 LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER-----------VDLSKVGIPLPGRLNNKSK 289 (885)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 289 (885)
. +...+... .... ...+.+.. ..-+|++|++... .....+...+. ....+.+
T Consensus 101 --~----l~~~~~g~-------~~~~-~~~~l~~a--~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~ 163 (287)
T CHL00181 101 --D----LVGQYIGH-------TAPK-TKEVLKKA--MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLV 163 (287)
T ss_pred --H----HHHHHhcc-------chHH-HHHHHHHc--cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEE
Confidence 1 22222110 1111 11122211 2348999998532 11222333333 3334567
Q ss_pred EEEecCChhHhhhc--------cCcceEEeccCChhhHHHHHHHHhcC
Q 039262 290 VVFTTRSEEVCGLM--------EAHKKFKVECLSHNDAWELFRQKVGG 329 (885)
Q Consensus 290 iivTtR~~~v~~~~--------~~~~~~~l~~L~~~e~~~Lf~~~~~~ 329 (885)
||+++....+.... .....+.+++++.+|..+++...+..
T Consensus 164 vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 164 VIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 77777654432211 12346899999999999998887743
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00041 Score=80.33 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=108.3
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|.+..++.|..++..+.. ..+.++|..|+||||+|+.+++... ....+.... .....-...+.+.....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~--c~~~~~~~~----~~Cg~C~~C~~i~~g~h 89 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN--CLNSDKPTP----EPCGKCELCRAIAAGNA 89 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc--CCCcCCCCC----CCCcccHHHHHHhcCCC
Confidence 3589999999999999987654 5788999999999999999999862 111110000 01111122222222211
Q ss_pred CCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhhh
Q 039262 234 LVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCGL 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (885)
... +.......++. ..+.+.+ .+++-++|+|++... ..+..+...+. .....+.+|+ |+....+...
T Consensus 90 ~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 90 LDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred ccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHH
Confidence 100 00001111111 1111111 244568899999643 34555555554 3233454454 4443333322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
......+++.+++.++....+...+.......+ .+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 233567888999999988888877644321222 345789999999987655433
No 137
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.83 E-value=0.00081 Score=68.89 Aligned_cols=198 Identities=16% Similarity=0.101 Sum_probs=114.9
Q ss_pred cccchH---HHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCC---CCEEEEEEEcCccCHHHHHH
Q 039262 156 TVVGLQ---SQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTN---FDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 156 ~~vGr~---~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~ 226 (885)
..+|-. +.++++.+.+.. ...+-+.|||.+|.|||++++++........+. --.++.|.....++...++.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 455543 234445555543 245679999999999999999999876221110 11477888888999999999
Q ss_pred HHHHHcCCCCccccccchhHHHHHHHHHhcc-CcEEEEEccccch-----hccccc---ccCCCCCCCCCcEEEEecCCh
Q 039262 227 AIGEKIGLVNDTWKNRRTEQKALDIFRNLKE-KKFVLLLDDIWER-----VDLSKV---GIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~-----~~~~~~---~~~l~~~~~~gs~iivTtR~~ 297 (885)
.|+.+++..... ..+.........+.++. +-=+||+|++.+. ..-..+ ...+. ..-.-+-|.+-|+.-
T Consensus 115 ~IL~~lgaP~~~--~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~-NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 115 AILEALGAPYRP--RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG-NELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHhCcccCC--CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh-hccCCCeEEeccHHH
Confidence 999999976532 23334444444455554 4458999999652 111111 11122 222334456666543
Q ss_pred hHhhhcc-----CcceEEeccCChh-hHHHHHHHHhcCC--ccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 298 EVCGLME-----AHKKFKVECLSHN-DAWELFRQKVGGE--TLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 298 ~v~~~~~-----~~~~~~l~~L~~~-e~~~Lf~~~~~~~--~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.-+-..+ ...++.+.....+ |...|+......- ..++.-...+++..|...++|+.--+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 2221111 1245666666544 4445544322111 11222344678999999999987544
No 138
>PF14516 AAA_35: AAA-like domain
Probab=97.83 E-value=0.0014 Score=70.53 Aligned_cols=200 Identities=14% Similarity=0.156 Sum_probs=118.6
Q ss_pred CCcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-----cCHHHHH---
Q 039262 154 DATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-----LRLENIQ--- 225 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~--- 225 (885)
.+..|.|...-+++.+.+.+. -..+.|.|+-.+|||+|...+.+... +..+ .++++++..- .+....+
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~ 85 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWF 85 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHH
Confidence 345678987777778777653 46899999999999999999998872 2333 4567876652 2345444
Q ss_pred -HHHHHHcCCCCc---ccc--ccchhHHHHHHHHHh-c--cCcEEEEEccccchhc--------------ccccccCCCC
Q 039262 226 -EAIGEKIGLVND---TWK--NRRTEQKALDIFRNL-K--EKKFVLLLDDIWERVD--------------LSKVGIPLPG 282 (885)
Q Consensus 226 -~~i~~~l~~~~~---~~~--~~~~~~~~~~l~~~l-~--~k~~LlVlDdv~~~~~--------------~~~~~~~l~~ 282 (885)
..|.++++.... .+. ..+.......+.+.+ . +++.+|+||+|+.... |..-+..-+
T Consensus 86 ~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~- 164 (331)
T PF14516_consen 86 CEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP- 164 (331)
T ss_pred HHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc-
Confidence 445555554321 011 112222333344432 2 5899999999964321 111111111
Q ss_pred CCCCCcEEEEecCChhH-hh----hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 283 RLNNKSKVVFTTRSEEV-CG----LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 283 ~~~~gs~iivTtR~~~v-~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
.-..-+-|++.+..... .. .......+.|++++.+|...|..+.-..-. ....++|...+||+|.-+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 00111122222211111 11 112235789999999999999887643211 2238999999999999999
Q ss_pred HHHHHhcC
Q 039262 358 TIGRAMSC 365 (885)
Q Consensus 358 ~~~~~l~~ 365 (885)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99999865
No 139
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=2.8e-06 Score=74.37 Aligned_cols=109 Identities=18% Similarity=0.242 Sum_probs=88.1
Q ss_pred eeEEEeecCCcccCCC----CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 517 VRRLSLMENQIDNLSG----VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 517 lr~L~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
...+.++++.+..++. ......|...++++| .+.++|+.+-..++.++.|+|++| .+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 3344555555544332 356678888999999 888999988888889999999999 8999999999999999999
Q ss_pred cCCCCccccchhhhccCCCcEEecCCccccccccch
Q 039262 593 LSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRR 628 (885)
Q Consensus 593 L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~ 628 (885)
++.|.+...|.-+..|.+|-.|+..++ -...+|.+
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 999999999988888999999998888 45666654
No 140
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.82 E-value=3.2e-06 Score=94.49 Aligned_cols=126 Identities=25% Similarity=0.352 Sum_probs=98.2
Q ss_pred ccccceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCE
Q 039262 512 RKWEKVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQH 590 (885)
Q Consensus 512 ~~~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (885)
..+.++..+++.+|.+..+.. ...+++|++|++++| .+..+.. +..+..|+.|++++| .|..++ .+..+.+|+.
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 445689999999999999988 788999999999999 7777765 678888999999999 788776 4566899999
Q ss_pred eecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccc
Q 039262 591 LDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIG 645 (885)
Q Consensus 591 L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (885)
+++++|.+..++.. +..+.+|+.+++.+|. +..+.. +..+..+..+.+..+.
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhccccc
Confidence 99999999888765 6888999999999984 333332 3334444444444443
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.81 E-value=0.00013 Score=72.91 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=80.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
+.+.|+|++|+|||+|++.+++.. .. .++. ..+. . . +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~--~~~~----------------------~-~-------~~~- 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIK--DIFF----------------------N-E-------EIL- 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcc--hhhh----------------------c-h-------hHH-
Confidence 679999999999999999987765 11 1111 0000 0 0 011
Q ss_pred cCcEEEEEccccchh--cccccccCCCCCCCCCcEEEEecCChh-------HhhhccCcceEEeccCChhhHHHHHHHHh
Q 039262 257 EKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVFTTRSEE-------VCGLMEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 257 ~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
+..-++++||+.... .+-.+...+. ..|..||+|++... ..+.+...-.++++++++++-..++.+.+
T Consensus 84 ~~~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 EKYNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred hcCCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 123478889995321 1111211121 35678999887542 22333445579999999999999988877
Q ss_pred cCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 328 GGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 328 ~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.......+ +++..-|++.+.|.--.+
T Consensus 161 ~~~~l~l~---~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 161 SISSVTIS---RQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHcCCCCC---HHHHHHHHHHccCCHHHH
Confidence 53322222 456788888887765544
No 142
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.81 E-value=0.0003 Score=78.34 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=92.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
..+.|+|..|+|||+|++++++... ....-..++++++ .++...+...+... .. ..+.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~-~~~~~~~v~yi~~------~~~~~~~~~~~~~~-------~~----~~~~~~~~ 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEIL-ENNPNAKVVYVSS------EKFTNDFVNALRNN-------KM----EEFKEKYR 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH-HhCCCCcEEEEEH------HHHHHHHHHHHHcC-------CH----HHHHHHHH
Confidence 5689999999999999999999872 1111124566643 33344444444211 11 12333333
Q ss_pred cCcEEEEEccccchhc---c-cccccCCCCCCCCCcEEEEecCCh-h--------HhhhccCcceEEeccCChhhHHHHH
Q 039262 257 EKKFVLLLDDIWERVD---L-SKVGIPLPGRLNNKSKVVFTTRSE-E--------VCGLMEAHKKFKVECLSHNDAWELF 323 (885)
Q Consensus 257 ~k~~LlVlDdv~~~~~---~-~~~~~~l~~~~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~e~~~Lf 323 (885)
+ .-+|||||+..... + +.+...+......|..+|+|+... . +...+.....+.+++.+.++-..++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 3 34889999964211 1 112221210112355688877642 1 2223333457899999999999999
Q ss_pred HHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 324 RQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.+.+.......+ +++...|++.+.|.+-.+
T Consensus 278 ~~~~~~~~~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEGLELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCCHHHH
Confidence 998854432222 456888888888876644
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.80 E-value=0.00033 Score=84.39 Aligned_cols=180 Identities=14% Similarity=0.109 Sum_probs=99.2
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--C-CCCCEEEE-EEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS--P-TNFDVVIW-VVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~w-v~~s~~~~~~~~~~~i~~ 230 (885)
+.++||+.++.++++.|......-+.++|.+|+||||+|+.+++..... . .-.+..+| +..+.- ..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l----------~a 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL----------QA 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------hc
Confidence 3589999999999999988776777899999999999999999986211 0 01122332 222110 00
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh-------ccc--ccccCCCCCCCCC-cEEEEecCChh
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV-------DLS--KVGIPLPGRLNNK-SKVVFTTRSEE 298 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~-------~~~--~~~~~l~~~~~~g-s~iivTtR~~~ 298 (885)
... .....++....+.+.+. +++.+|++|++..-. ..+ .+..+.. ..| -++|-||...+
T Consensus 257 ---g~~---~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 ---GAS---VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTIAATTWAE 327 (852)
T ss_pred ---ccc---cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEEEecCHHH
Confidence 000 01112222222222222 468999999985321 111 1222222 233 45666665533
Q ss_pred Hhhh-------ccCcceEEeccCChhhHHHHHHHHhcCCcc-CCCchhHHHHHHHHHHhCCch
Q 039262 299 VCGL-------MEAHKKFKVECLSHNDAWELFRQKVGGETL-NCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 299 v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~-~~~~~l~~~~~~i~~~c~GlP 353 (885)
.... ......+.+++++.++..+++......-.. ..-.-..+....+++.+++..
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2111 123357999999999999997654421110 000112445667777776543
No 144
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.79 E-value=0.00015 Score=74.93 Aligned_cols=163 Identities=18% Similarity=0.203 Sum_probs=103.6
Q ss_pred CCcccchHHHHHHHHHHHccCC---CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQEP---AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~---~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.+.+.+|+.++..+...+.+.. ...|.|+|.+|.|||.+++++.+.. .. ..+|+++-..++.+.++..|+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-NL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-CC-----cceeeehHHhccHHHHHHHHHH
Confidence 3578999999999999998753 3456899999999999999999987 21 3689999999999999999999
Q ss_pred HcCCCCc-ccc-c---cchhHHHHHHHH--Hhc--cCcEEEEEccccchhcccccc--------cCCCCCCCCCcEEEEe
Q 039262 231 KIGLVND-TWK-N---RRTEQKALDIFR--NLK--EKKFVLLLDDIWERVDLSKVG--------IPLPGRLNNKSKVVFT 293 (885)
Q Consensus 231 ~l~~~~~-~~~-~---~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~--------~~l~~~~~~gs~iivT 293 (885)
+.+.... ... . .........+.+ ... ++.++||||+++.-.+.+.+. ..++ -+.. +|++
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~---~~~i-~iil 154 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN---EPTI-VIIL 154 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC---CCce-EEEE
Confidence 9852221 101 1 111222233333 222 358999999997654433321 1121 1223 3333
Q ss_pred cCC--hhHh-hhccCcc--eEEeccCChhhHHHHHHHH
Q 039262 294 TRS--EEVC-GLMEAHK--KFKVECLSHNDAWELFRQK 326 (885)
Q Consensus 294 tR~--~~v~-~~~~~~~--~~~l~~L~~~e~~~Lf~~~ 326 (885)
+-- +..- ..++... ++....-+.+|...++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 322 2221 1133333 4566788889988888653
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.78 E-value=0.0003 Score=70.73 Aligned_cols=181 Identities=13% Similarity=0.160 Sum_probs=112.7
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEE-EEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVI-WVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..+.-+.+.+......+...+|++|.|||+-|..++... --.+-|.+++ =.++|......-+-..+
T Consensus 36 de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Ki----- 109 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKI----- 109 (346)
T ss_pred HhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhh-----
Confidence 4689999999999999988888999999999999999999998886 2235555443 23444433221000000
Q ss_pred CCCccccccchhHHHHHHHHHh--ccCc-EEEEEccccch--hcccccccCCCCCCCCCcEEE-EecCChhHhhhc-cCc
Q 039262 234 LVNDTWKNRRTEQKALDIFRNL--KEKK-FVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV-FTTRSEEVCGLM-EAH 306 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v~~~~-~~~ 306 (885)
.+............ ..++ -.+|||+++.. ..|..++..+. .....++.| ||+--..+.... ...
T Consensus 110 --------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 110 --------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred --------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhH
Confidence 00000000000000 0133 37889999754 56877777665 444555555 444333332221 223
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
..|+.++|.+++...-++..+..+....+ .+..+.|++.++|--
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDID---DDALKLIAKISDGDL 224 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcH
Confidence 56899999999999999998866554444 345788999998854
No 146
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00018 Score=80.28 Aligned_cols=159 Identities=17% Similarity=0.172 Sum_probs=95.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
..-+.|+|..|+|||+|++.+++... ..+.+ .++|++. .++...+...+... ... .+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~-------~~~----~f~~~ 190 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG-------KLN----EFREK 190 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc-------cHH----HHHHH
Confidence 34699999999999999999999872 22233 5666654 34555555554311 111 23333
Q ss_pred hccCcEEEEEccccchh---cc-cccccCCCCCCCCCcEEEEecC-ChhH--------hhhccCcceEEeccCChhhHHH
Q 039262 255 LKEKKFVLLLDDIWERV---DL-SKVGIPLPGRLNNKSKVVFTTR-SEEV--------CGLMEAHKKFKVECLSHNDAWE 321 (885)
Q Consensus 255 l~~k~~LlVlDdv~~~~---~~-~~~~~~l~~~~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~e~~~ 321 (885)
+..+.-+|++||+.... .+ +.+...+......|..||+||. .+.- ...+.....+.+++.+.+.-.+
T Consensus 191 ~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 191 YRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred HHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 33445689999996321 11 1221122101123457888874 3321 2223344578999999999999
Q ss_pred HHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 322 LFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 322 Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
++.+.+.......+ +++...|++.+.|..-.+
T Consensus 271 IL~~~~~~~~~~l~---~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 271 IARKMLEIEHGELP---EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHhccccCHHHH
Confidence 99998854332222 456888888888865544
No 147
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00088 Score=76.68 Aligned_cols=189 Identities=12% Similarity=0.102 Sum_probs=107.3
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|-+..++.|...+..+... .+.++|+.|+||||+|+.+++..- -...... ..+....+- +.|...-.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~-c~~~~~~---~pC~~C~~C----~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN-CVNGPTP---MPCGECSSC----KSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc-cccCCCC---CCCccchHH----HHHHcCCC
Confidence 36899999999999999876554 588999999999999999998862 1111000 001111111 11111100
Q ss_pred CCC---ccccccchhHHHHHHHHH-----hccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEEecC-ChhHhhh
Q 039262 234 LVN---DTWKNRRTEQKALDIFRN-----LKEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVFTTR-SEEVCGL 302 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iivTtR-~~~v~~~ 302 (885)
... +.......++.. .+.+. ..+++-++|+|++.. ...+..+...+. .....+.+|++|. ...+...
T Consensus 88 ~dv~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCeEEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHH
Confidence 000 000001112211 12111 234566899999854 334555555554 3345566665554 3444322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
......+++.+++.++....+.+.+.......+ .+.+..|++.++|.+-.+
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 223456899999999999888887643332222 456788999999987544
No 148
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.76 E-value=0.00051 Score=76.43 Aligned_cols=152 Identities=13% Similarity=0.094 Sum_probs=88.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
.-+.|+|..|+|||+|++.+++... .....+++++. ..+...+...+... . ...+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~---~~~~~v~yi~~------~~f~~~~~~~l~~~-------~----~~~f~~~~~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALR---ESGGKILYVRS------ELFTEHLVSAIRSG-------E----MQRFRQFYR 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHH---HcCCCEEEeeH------HHHHHHHHHHHhcc-------h----HHHHHHHcc
Confidence 5689999999999999999999872 12233455542 33444444444211 1 122333333
Q ss_pred cCcEEEEEccccchhc----ccccccCCCCCCCCCcEEEEecCCh---------hHhhhccCcceEEeccCChhhHHHHH
Q 039262 257 EKKFVLLLDDIWERVD----LSKVGIPLPGRLNNKSKVVFTTRSE---------EVCGLMEAHKKFKVECLSHNDAWELF 323 (885)
Q Consensus 257 ~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 323 (885)
..-+|++||+..... .+.+...+......|..||+||... .+...+.....+.+.+++.++-..++
T Consensus 202 -~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL 280 (445)
T PRK12422 202 -NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFL 280 (445)
T ss_pred -cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHH
Confidence 344888899854211 1122222110112356788888542 22333444567899999999999999
Q ss_pred HHHhcCCccCCCchhHHHHHHHHHHhCCc
Q 039262 324 RQKVGGETLNCHPDILELAETVAKECGGL 352 (885)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (885)
.+++.......+ +++..-|+..+.|.
T Consensus 281 ~~k~~~~~~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 281 ERKAEALSIRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHcCCCCC---HHHHHHHHHhcCCC
Confidence 988754332222 34566677766644
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.74 E-value=0.00021 Score=78.64 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=96.0
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++.|.+.++++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f-----i~V~~s---- 251 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF-----LRVVGS---- 251 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE-----EEEecc----
Confidence 578999999998887641 234578899999999999999999986 3333 222111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----------------ccccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----------------LSKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 285 (885)
.+ ..... ..........+.....+.+.+++||+++.... +..+...+.. ...
T Consensus 252 eL----~~k~~-------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 EL----IQKYL-------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred hh----hhhhc-------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11 11110 01111111122222345788999999853210 0011111110 113
Q ss_pred CCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 286 NKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 286 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.+.+||+||...+.... + .....+.+...+.++..++|..++.......+.+ ...++..+.|+-
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 35678888876544322 1 1245789999999999999998775443222223 345555665543
No 150
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.8e-05 Score=92.20 Aligned_cols=131 Identities=17% Similarity=0.177 Sum_probs=86.3
Q ss_pred cceeEEEeecCCcccC--C-C-CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCE
Q 039262 515 EKVRRLSLMENQIDNL--S-G-VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQH 590 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l--~-~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (885)
.++++|++.+...-.- + . ...+|+|++|.+.+-.....--...+.++++|+.||+|++ +++.+ ..+++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 3788898877532210 0 0 2467899999988752111101123578899999999999 88888 68999999999
Q ss_pred eecCCCCccccc--hhhhccCCCcEEecCCccccccc--cch---hhcCCCCCcEEEeeccccc
Q 039262 591 LDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVI--PRR---LISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 591 L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~l--p~~---~i~~l~~L~~L~l~~~~~~ 647 (885)
|.+++-.+..-+ ..+.+|++|++||++........ ... .-..|++|+.|+.+++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998887665533 45778999999999887433221 110 0134777787877765443
No 151
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.71 E-value=0.00074 Score=73.90 Aligned_cols=172 Identities=16% Similarity=0.192 Sum_probs=96.7
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f-----i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF-----IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEeh----
Confidence 3578999999888876631 245679999999999999999999986 2232 22211
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh------------c----ccccccCCCC-CC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV------------D----LSKVGIPLPG-RL 284 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 284 (885)
.. +..... ..........+.......+.+|++|+++... . +..+...+.. ..
T Consensus 213 s~----l~~k~~-------ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 SE----FVQKYL-------GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred HH----HHHHhc-------chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 11 111110 0111111122222334578999999985320 0 1111111110 12
Q ss_pred CCCcEEEEecCChhHhhh--c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 285 NNKSKVVFTTRSEEVCGL--M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
..+..||+||...+.... . .-...+.+...+.++...+|...........+.+ ...+++.+.|..
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 345678888876543221 1 2245688888899998888887764433222223 355666676654
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.68 E-value=0.00031 Score=79.32 Aligned_cols=159 Identities=18% Similarity=0.167 Sum_probs=93.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
...+.|+|..|+|||+|++.+++... ....--.+++++.. ++...+...+.. ... ..+.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~-~~~~~~~v~yi~~~------~~~~~~~~~~~~-------~~~----~~~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYIL-EKNPNAKVVYVTSE------KFTNDFVNALRN-------NTM----EEFKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEEHH------HHHHHHHHHHHc-------CcH----HHHHHHH
Confidence 35689999999999999999999972 11112245566442 333344444321 111 2233333
Q ss_pred ccCcEEEEEccccchh----cccccccCCCCCCCCCcEEEEecCChh---------HhhhccCcceEEeccCChhhHHHH
Q 039262 256 KEKKFVLLLDDIWERV----DLSKVGIPLPGRLNNKSKVVFTTRSEE---------VCGLMEAHKKFKVECLSHNDAWEL 322 (885)
Q Consensus 256 ~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~e~~~L 322 (885)
+ +.-+||+||+.... ..+.+...+......|..||+||.... +...+.....+++++.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 24489999995321 112222211101123456888776532 233344456789999999999999
Q ss_pred HHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 323 FRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 323 f~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+.+.+.......+ +++...|++.+.|..-.+
T Consensus 289 l~~~~~~~~~~l~---~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 289 LKKKAEEEGIDLP---DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHcCcCCCHHHH
Confidence 9998854332222 456888999999877644
No 153
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.0024 Score=68.18 Aligned_cols=204 Identities=16% Similarity=0.150 Sum_probs=118.9
Q ss_pred CCcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
+..++||+.+++.+.+++.. ...+.+.|.|.+|.|||.+...++.+....... ..++++.+..-.....++..|.
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 34689999999999998865 467889999999999999999999987211111 2457777666556677777777
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhcc--CcEEEEEccccchh--cccccccCCCCCCCCCcEEEEecCC--hhHhh--
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKE--KKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKVVFTTRS--EEVCG-- 301 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~iivTtR~--~~v~~-- 301 (885)
..+..... ......+....+.....+ +.+|+|+|..+.-. .-..+...|.-..-+++|+|+.--. -+..+
T Consensus 228 ~~~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 228 SSLLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 77621110 111224445555555554 36899999985421 1111111111011345665543211 11111
Q ss_pred ---h----ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHh----CCchhHHHHHHHH
Q 039262 302 ---L----MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKEC----GGLPLALITIGRA 362 (885)
Q Consensus 302 ---~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c----~GlPLai~~~~~~ 362 (885)
. .-....+...|.+.++-.++|.++...... ........+.++++| |.+--|+-+.-+.
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 1 112346788999999999999998855431 122223344444554 4444555444433
No 154
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=2.1e-05 Score=78.04 Aligned_cols=107 Identities=24% Similarity=0.276 Sum_probs=67.7
Q ss_pred cccEEEecCCCccccCc--hhH-hccccCCEeecCCCCccc---cchhhhccCCCcEEecCCccccccccchhhcCCCCC
Q 039262 563 RLKVLNLSGAKQLFYFP--LVI-SKLVSLQHLDLSDTNVAV---LPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSL 636 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp--~~i-~~L~~L~~L~L~~~~i~~---Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 636 (885)
.+..|.+.+| .|...- ..+ ....+++.|||.+|.|.. +-.-+.+|+.|++|+|+.|+.-..+.. .-.-+.+|
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNL 123 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-Ccccccce
Confidence 4556677777 554432 122 356889999999998744 444567899999999998842111111 00134588
Q ss_pred cEEEeecccccCCCCcccccchhhhcCCCCccEEEEEeccc
Q 039262 637 HVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNS 677 (885)
Q Consensus 637 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 677 (885)
++|-+.+.+..... .-..+..++.++.|+++.|+.
T Consensus 124 ~~lVLNgT~L~w~~------~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQ------STSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhh------hhhhhhcchhhhhhhhccchh
Confidence 88888877665432 223456677777777776543
No 155
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00064 Score=78.52 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=107.4
Q ss_pred CcccchHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..+..|.+.+..+... .+.++|..|+||||+|+.+++..-- ....+. .....-...+.|...-.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c-~~~~~~-------~~c~~c~~c~~i~~g~~ 87 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC-EQGLTA-------EPCNVCPPCVEITEGRS 87 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC-CCCCCC-------CCCCccHHHHHHhcCCC
Confidence 46899999999999999887654 5689999999999999999887521 111000 00000011111111000
Q ss_pred CCCccc---cccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhhh
Q 039262 234 LVNDTW---KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCGL 302 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (885)
...-.. .....++ +..+.+.+ .+++-++|+|++... .....+...+. .....+.+|+ ||....+...
T Consensus 88 ~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 88 VDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHH
Confidence 000000 0011111 12222222 234558899998543 33444444443 2234555554 5555555432
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch-hHHHHHHHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP-LALITIGRA 362 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-Lai~~~~~~ 362 (885)
......+++.+++.++....+...+.......+ .+....|++.++|.. .|+..+-..
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 234567889999999998888876643332222 345788999999865 455554433
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0015 Score=69.28 Aligned_cols=195 Identities=16% Similarity=0.150 Sum_probs=109.4
Q ss_pred cccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCC------------CCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGS------------PTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~------------~~~f~~~~wv~~s~~~~~~ 222 (885)
+++|.+..++.+.+.+..++. ....++|..|+||+++|..+++..--. ...++-..|+.-....+-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~ 84 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGK 84 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccccc
Confidence 589999999999999988764 789999999999999999988875211 1112223444321100000
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhc-----cCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ec
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK-----EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TT 294 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-Tt 294 (885)
.+-.+-++..+...........++ ++.+.+.+. +++-++|+|++... .....+...+. ... .+.+|+ |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp-~~~fILi~~ 161 (314)
T PRK07399 85 LITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLE-EPG-NGTLILIAP 161 (314)
T ss_pred ccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHh-CCC-CCeEEEEEC
Confidence 000111111111000000111122 233444443 45668999998643 33444444443 223 334554 44
Q ss_pred CChhHhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 295 RSEEVCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 295 R~~~v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
....+.. .......+++.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4444432 223456889999999999999988753211 0111367899999999766443
No 157
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0014 Score=75.34 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=105.0
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.+.+.+..++. +.+.++|+.|+||||+|+.+++... -...-+ ..+.+.-...+.|.....
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~-c~~~~~-------~~pC~~C~~C~~i~~g~~ 87 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN-CLNPPD-------GEPCNECEICKAITNGSL 87 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCC-------CCCCCccHHHHHHhcCCC
Confidence 4689999999999999987654 4577899999999999999988751 111000 001111111222211111
Q ss_pred CCCccc---cccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEE-ecCChhHhhh
Q 039262 234 LVNDTW---KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVF-TTRSEEVCGL 302 (885)
Q Consensus 234 ~~~~~~---~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iiv-TtR~~~v~~~ 302 (885)
...-.. .....+ ....+.+.. .+++-++|+|++... ..+..+...+. .......+|+ ||....+...
T Consensus 88 ~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 88 MDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHH
Confidence 000000 011111 111222221 345668899999643 33444544443 2233444454 5544444322
Q ss_pred -ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 303 -MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 303 -~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
......+.+.+++.++....+...+.......+ .+....|++.++|.+.-+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 233457889999999999988887743332222 345788889999877544
No 158
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.6e-05 Score=89.80 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=34.7
Q ss_pred CceeeeccCCcc-ccccCchhhcCCCcccEEEecCCCcc--ccCchhHhccccCCEeecCCCCccccchhhhccCCCcEE
Q 039262 538 YLLTLFLNNNKQ-LLIMDRGFFQCMPRLKVLNLSGAKQL--FYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCL 614 (885)
Q Consensus 538 ~Lr~L~l~~~~~-l~~~~~~~~~~l~~Lr~L~Ls~~~~i--~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L 614 (885)
+|+.|+++|... ....+..+...+|.|+.|.+++- .+ .++-.-..+++||..||+|+|+++.+ .++++|+||+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 455555544321 11222333344555555555543 11 11122233445555555555555555 445555555555
Q ss_pred ecCC
Q 039262 615 NLEN 618 (885)
Q Consensus 615 ~l~~ 618 (885)
.+.+
T Consensus 201 ~mrn 204 (699)
T KOG3665|consen 201 SMRN 204 (699)
T ss_pred hccC
Confidence 4443
No 159
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.63 E-value=0.00033 Score=75.41 Aligned_cols=145 Identities=12% Similarity=0.134 Sum_probs=83.2
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+...+.+..++..+.. .++.++|.+|+||||+|+.+++.. ... ...+..+. .....+ +..+..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~-~~~~~i-~~~l~~~~ 92 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD-CRIDFV-RNRLTRFA 92 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc-ccHHHH-HHHHHHHH
Confidence 4689999999999999887654 567779999999999999998875 111 23344433 111111 11111110
Q ss_pred CCCccccccchhHHHHHHHHHhccCcEEEEEccccch--h-cccccccCCCCCCCCCcEEEEecCChhH-hh-hccCcce
Q 039262 234 LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--V-DLSKVGIPLPGRLNNKSKVVFTTRSEEV-CG-LMEAHKK 308 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~-~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~-~~~~~~~ 308 (885)
.. ..+.+.+-++|+||+... . ....+...+. ....++++|+||....- .. .......
T Consensus 93 ~~-----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 93 ST-----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred Hh-----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceE
Confidence 00 001134558899999643 1 1222222232 33456788888865431 11 1122345
Q ss_pred EEeccCChhhHHHHHHH
Q 039262 309 FKVECLSHNDAWELFRQ 325 (885)
Q Consensus 309 ~~l~~L~~~e~~~Lf~~ 325 (885)
+.+...+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 67777777777666544
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.63 E-value=0.0012 Score=74.87 Aligned_cols=158 Identities=20% Similarity=0.144 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
..+.|+|..|+|||.|++.+++.... ...--.+++++. .++..++...+.. .. ...+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yita------eef~~el~~al~~-------~~----~~~f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSS------EEFTNEFINSIRD-------GK----GDSFRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeH------HHHHHHHHHHHHh-------cc----HHHHHHHhh
Confidence 45899999999999999999998721 111124556643 3344444443321 11 112333333
Q ss_pred cCcEEEEEccccch---hcc-cccccCCCCCCCCCcEEEEecCCh---------hHhhhccCcceEEeccCChhhHHHHH
Q 039262 257 EKKFVLLLDDIWER---VDL-SKVGIPLPGRLNNKSKVVFTTRSE---------EVCGLMEAHKKFKVECLSHNDAWELF 323 (885)
Q Consensus 257 ~k~~LlVlDdv~~~---~~~-~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~~~Lf 323 (885)
+ .=+|||||+... ..| +.+...+......|..|||||+.. ++...+...-.+.+.+.+.+.-.+++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 247889999532 112 122222211123456788888753 23344455678899999999999999
Q ss_pred HHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 324 RQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.+++.......+ +++..-|++.+.+..-.+
T Consensus 456 ~kka~~r~l~l~---~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQEQLNAP---PEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhcCCCCC---HHHHHHHHHhccCCHHHH
Confidence 998855443333 456777888777665444
No 161
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00048 Score=82.42 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=88.5
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCC-CEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNF-DVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.++||+++++++++.|......-+.++|.+|+|||++|+.+++..... ...+ +..+|. ++ .. .+....
T Consensus 183 ~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~----~l~a~~ 253 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG----SLLAGT 253 (731)
T ss_pred cccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH----HHhhhc
Confidence 589999999999999987766677899999999999999999886211 1111 334442 11 11 111100
Q ss_pred CCCCccccccchhHHHHHHHHHhc-cCcEEEEEccccchh----------cccccccCCCCCCCCC-cEEEEecCChhHh
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLK-EKKFVLLLDDIWERV----------DLSKVGIPLPGRLNNK-SKVVFTTRSEEVC 300 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~g-s~iivTtR~~~v~ 300 (885)
. ...+.++....+.+.++ .++.+|++|++..-. +...+..+.. ..| -++|-+|...+..
T Consensus 254 ~------~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 254 K------YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYK 324 (731)
T ss_pred c------ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHH
Confidence 0 01122333334444333 467899999985321 1112222211 223 3455544432221
Q ss_pred h-------hccCcceEEeccCChhhHHHHHHHHh
Q 039262 301 G-------LMEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 301 ~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
. .......+.++.++.++..+++....
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 11123578999999999999998654
No 162
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.0021 Score=68.53 Aligned_cols=94 Identities=10% Similarity=0.119 Sum_probs=59.6
Q ss_pred CcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hh-hhccCcceEEeccCChhhHHHHHHHHhcCCccC
Q 039262 258 KKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VC-GLMEAHKKFKVECLSHNDAWELFRQKVGGETLN 333 (885)
Q Consensus 258 k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~ 333 (885)
++-++|+|+++.. .....+...+. ....++.+|+||.+.. +. ........+.+.+++.+++.+.+.+......
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~-- 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD-- 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC--
Confidence 3445577999643 33444444444 3345677777776653 32 2223456789999999999999987642111
Q ss_pred CCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 334 CHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 334 ~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
.+.+..++..++|.|..+..+
T Consensus 183 -----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 -----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999765544
No 163
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.56 E-value=0.0011 Score=72.95 Aligned_cols=165 Identities=21% Similarity=0.182 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc
Q 039262 159 GLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT 238 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~ 238 (885)
-|..-..++.+.+..... ++.|.|+-++||||+++.+.... .+. .+++..-+......-+.+....
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~~~~~l~d~~~~------- 86 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRLDRIELLDLLRA------- 86 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhcchhhHHHHHHH-------
Confidence 344555566666554433 99999999999999997777665 222 5665543322111111111111
Q ss_pred ccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHh-----hh-ccCcceEEec
Q 039262 239 WKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC-----GL-MEAHKKFKVE 312 (885)
Q Consensus 239 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~-----~~-~~~~~~~~l~ 312 (885)
+...-..++..++||.|....+|+.....+. +.+.. +|++|+-+.... .. .+....+++.
T Consensus 87 ------------~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~ 152 (398)
T COG1373 87 ------------YIELKEREKSYIFLDEIQNVPDWERALKYLY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELY 152 (398)
T ss_pred ------------HHHhhccCCceEEEecccCchhHHHHHHHHH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEEC
Confidence 1111112778999999999999998877776 44555 899988876542 22 2345678999
Q ss_pred cCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 313 CLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 313 ~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
||+..|-..+-. ..... ... ...-.-.-..||.|.++..
T Consensus 153 PlSF~Efl~~~~-----~~~~~-~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 153 PLSFREFLKLKG-----EEIEP-SKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred CCCHHHHHhhcc-----cccch-hHH-HHHHHHHHHhCCCcHHHhC
Confidence 999999876543 00000 011 1122233356888887754
No 164
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.51 E-value=0.0051 Score=61.09 Aligned_cols=46 Identities=28% Similarity=0.465 Sum_probs=38.8
Q ss_pred CcccchHHHHHHHHHHH----ccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCL----VQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.++|.|.+++.|++-. ......-+.+||..|+|||++++++.+.+
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY 76 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH
Confidence 46899999998887643 33466778899999999999999999988
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00012 Score=68.96 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=37.6
Q ss_pred hcCCCcccEEEecCCCccccCchhHhc-cccCCEeecCCCCccccc--hhhhccCCCcEEecCCcccccccc---chhhc
Q 039262 558 FQCMPRLKVLNLSGAKQLFYFPLVISK-LVSLQHLDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIP---RRLIS 631 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~lp~~i~~-L~~L~~L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp---~~~i~ 631 (885)
|.+++.|..|.|++| .|+.+-..+.. +++|..|.|.+|+|.+|- ..+..++.|++|.+-+|+. +.-+ .-++.
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch-hcccCceeEEEE
Confidence 444444444545444 44443322222 334555555555444433 1234445555555555421 1111 11345
Q ss_pred CCCCCcEEEeecc
Q 039262 632 SFSSLHVLRMFGI 644 (885)
Q Consensus 632 ~l~~L~~L~l~~~ 644 (885)
++++|+.|++..+
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 5666666666543
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0017 Score=66.90 Aligned_cols=196 Identities=19% Similarity=0.244 Sum_probs=113.2
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++=|-++++++|.+.+.- +..+=|.++|++|.|||-||++|++.. ... |+.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrvvgS---- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRVVGS---- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEeccH----
Confidence 356899999999888642 366789999999999999999999986 333 3433321
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhcc-CcEEEEEccccchh----------------cccccccCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKE-KKFVLLLDDIWERV----------------DLSKVGIPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 284 (885)
++.+..-+. -..+...+.+.-+. .+.+|.+|.++... ..-++..-+.+ +.
T Consensus 220 ----ElVqKYiGE--------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 ----ELVQKYIGE--------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred ----HHHHHHhcc--------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 222222111 12334444444443 68899999885310 01111111210 23
Q ss_pred CCCcEEEEecCChhHhhh-----ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch----hH
Q 039262 285 NNKSKVVFTTRSEEVCGL-----MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP----LA 355 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP----La 355 (885)
...-|||..|...++... ..-...+++..-+.+.-.+.|.-++.......+-++ +.+++.|.|.- -|
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCchHHHHH
Confidence 446789998876665322 122456777755556666777777765554444443 56667777654 34
Q ss_pred HHHHHHHhc--CCC---ChHHHHHHHHHH
Q 039262 356 LITIGRAMS--CKR---MPEEWSYAIQVL 379 (885)
Q Consensus 356 i~~~~~~l~--~~~---~~~~w~~~~~~l 379 (885)
+.+=|++++ ..+ +.+++..+.++.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 555566653 222 345555554443
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.45 E-value=0.00021 Score=74.01 Aligned_cols=103 Identities=24% Similarity=0.280 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
..+.++|..|+|||.||.++++... .....+++++ ..+++..+........ ..+ ...+.+.+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~---~~~~~v~~~~------~~~ll~~i~~~~~~~~----~~~----~~~~~~~l~ 177 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI---EKGVPVIFVN------FPQLLNRIKSTYKSSG----KED----ENEIIRSLV 177 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEE------HHHHHHHHHHHHhccc----ccc----HHHHHHHhc
Confidence 4589999999999999999999972 2234456665 3445555555443211 111 122334444
Q ss_pred cCcEEEEEcccc--chhcccc--cccCCCCCCCCCcEEEEecCCh
Q 039262 257 EKKFVLLLDDIW--ERVDLSK--VGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 257 ~k~~LlVlDdv~--~~~~~~~--~~~~l~~~~~~gs~iivTtR~~ 297 (885)
+-. ||||||+. ...+|.. +...+......|..+||||...
T Consensus 178 ~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 178 NAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred CCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 444 89999993 2233322 2222211123456789998653
No 168
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.45 E-value=0.00086 Score=75.01 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=88.3
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCCCEEEEEEEcCccC
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~ 220 (885)
++.|.+..+++|.+.+.- ...+-+.++|++|+|||++|+.+++..... ........|+.+...
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~-- 260 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP-- 260 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--
Confidence 477899999998887642 134569999999999999999999987210 001223445544331
Q ss_pred HHHHHHHHHHHcCCCCccccccchhHHHHHHHHH-hccCcEEEEEccccchh---------c-----ccccccCCCCC-C
Q 039262 221 LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN-LKEKKFVLLLDDIWERV---------D-----LSKVGIPLPGR-L 284 (885)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~---------~-----~~~~~~~l~~~-~ 284 (885)
+++...... ............+.. -.+++++++||+++... + ...+...+... .
T Consensus 261 ------eLl~kyvGe----te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ------ELLNKYVGE----TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ------hhcccccch----HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 111111000 000011111111211 12478999999996421 1 11222222211 1
Q ss_pred CCCcEEEEecCChhHhh-hc----cCcceEEeccCChhhHHHHHHHHhc
Q 039262 285 NNKSKVVFTTRSEEVCG-LM----EAHKKFKVECLSHNDAWELFRQKVG 328 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~e~~~Lf~~~~~ 328 (885)
..+..||.||...+... .+ .-...+.++..+.++..++|..++.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 13445566665544321 11 2245689999999999999998874
No 169
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.44 E-value=0.0018 Score=74.15 Aligned_cols=172 Identities=16% Similarity=0.137 Sum_probs=92.7
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++++.+.+. . ...+-+.++|++|+|||++|+.+++.. ... ++.++..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~-----~~~i~~~---- 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVP-----FFSISGS---- 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCC-----eeeccHH----
Confidence 357888877766655442 1 233468899999999999999999886 222 2222211
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc------------c----cccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD------------L----SKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------------~----~~~~~~l~~-~~~ 285 (885)
++ ..... ..........+.......+.+|+|||++.-.. + ..+...+.. ...
T Consensus 123 ~~----~~~~~-------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 123 DF----VEMFV-------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred HH----HHHHh-------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 11 11110 01112222223333345678999999854210 0 111111110 122
Q ss_pred CCcEEEEecCChhHh-----hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 286 NKSKVVFTTRSEEVC-----GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 286 ~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.+..||.||...... +...-...+.+...+.++-.++|...+.......+. ....+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~----~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDV----DLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcch----hHHHHHHhCCCCC
Confidence 344566677654321 111234578888889988899998877543212111 2457888887743
No 170
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0015 Score=71.58 Aligned_cols=170 Identities=18% Similarity=0.216 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLEN 223 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (885)
++-|.++.+.++.+.+.. ...+-|.++|++|+|||.||++++++. .+ -++.++.+
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~v-------Pf~~isAp----- 257 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GV-------PFLSISAP----- 257 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CC-------ceEeecch-----
Confidence 467899988888877643 255679999999999999999999997 22 23444332
Q ss_pred HHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--------hc-----cccccc---CCC--CCCC
Q 039262 224 IQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--------VD-----LSKVGI---PLP--GRLN 285 (885)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~-----~~~~~~---~l~--~~~~ 285 (885)
+|.... .+.++......+.+....-++++++|+++-. .+ ..++.. -+. ...+
T Consensus 258 ---eivSGv-------SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ---EIVSGV-------SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ---hhhccc-------CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122222 2233344444444555678999999998631 00 111111 111 1223
Q ss_pred CCcEEEE-ecCChhHhhhc---c-CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc
Q 039262 286 NKSKVVF-TTRSEEVCGLM---E-AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL 352 (885)
Q Consensus 286 ~gs~iiv-TtR~~~v~~~~---~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (885)
.+.-||- |+|...+-..+ + -...|.+.--++..-.++++..+.+-....+-+ -++|++..-|.
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGf 395 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGF 395 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCc
Confidence 3333333 44544332111 1 235677777777666667766654332222223 35566655554
No 171
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.43 E-value=0.00067 Score=82.20 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=88.3
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcC--CCCCC-CEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLG--SPTNF-DVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.++||+++++++++.|......-+.++|.+|+|||++|+.++..... +.... +..+|. + +...+ +.
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a-- 248 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA-- 248 (821)
T ss_pred CCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc--
Confidence 47999999999999998866667789999999999999999888621 11111 234442 1 11111 11
Q ss_pred CCCCccccccchhHHHHHHHHHhc-cCcEEEEEccccchh---------cccccccCCCCCCCCCcEEEEecCChhHhhh
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLK-EKKFVLLLDDIWERV---------DLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL 302 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (885)
... -....++....+.+.+. .++.+|++|++..-. +...+..+.. . ...-++|.+|........
T Consensus 249 -g~~---~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l-~-rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 -GTK---YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL-A-RGELQCIGATTLDEYRKH 322 (821)
T ss_pred -cCC---CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH-h-CCCcEEEEeCCHHHHHHH
Confidence 100 01122333333333333 468999999985221 1112222221 1 122455666655543211
Q ss_pred -------ccCcceEEeccCChhhHHHHHHHH
Q 039262 303 -------MEAHKKFKVECLSHNDAWELFRQK 326 (885)
Q Consensus 303 -------~~~~~~~~l~~L~~~e~~~Lf~~~ 326 (885)
......+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 122346788888999988888754
No 172
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.42 E-value=0.0012 Score=80.06 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=41.2
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++||+.++.++++.|......-+.++|.+|+||||+|+.++...
T Consensus 179 ~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred cCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999988777778899999999999999999886
No 173
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=8.5e-06 Score=90.09 Aligned_cols=126 Identities=22% Similarity=0.232 Sum_probs=90.7
Q ss_pred cccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEee
Q 039262 563 RLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMF 642 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (885)
.|.+-+.++| .+..+-+++.-+++|+.|||++|++...- .+..|++|+||||+.| .+..+|.-....+ .|+.|.+.
T Consensus 165 ~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeec
Confidence 3555566666 66667778888999999999999998776 7889999999999999 6888886212233 39999998
Q ss_pred cccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCC
Q 039262 643 GIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFK 702 (885)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 702 (885)
+|... .+.++.+|++|+.|+++.|-+.....+.... ....|+.|.|.+++
T Consensus 241 nN~l~---------tL~gie~LksL~~LDlsyNll~~hseL~pLw-sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 NNALT---------TLRGIENLKSLYGLDLSYNLLSEHSELEPLW-SLSSLIVLWLEGNP 290 (1096)
T ss_pred ccHHH---------hhhhHHhhhhhhccchhHhhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence 87654 3556778889999999988665443332211 12456666666643
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.38 E-value=0.011 Score=71.41 Aligned_cols=46 Identities=33% Similarity=0.380 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.++.+++|.+++.. ....++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999887642 134589999999999999999999987
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0077 Score=63.66 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCC----------------CCCCEEEEEEEcCccCHHH
Q 039262 161 QSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSP----------------TNFDVVIWVVVSKDLRLEN 223 (885)
Q Consensus 161 ~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~----------------~~f~~~~wv~~s~~~~~~~ 223 (885)
+...+.+...+..++.. .+.++|+.|+||+++|..++...--.. .|-| ..||.......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~~--- 85 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNRT--- 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCcc---
Confidence 34566777777776654 588999999999999999887752100 0111 11221000000
Q ss_pred HHHHHHHHcCCCCccccccchhHHHHHHHHHhc-----cCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCC
Q 039262 224 IQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK-----EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRS 296 (885)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~ 296 (885)
+ .........+ .+..+.+.+. +++=++|+|+++.. ..-..+...+. ....++.+|++|.+
T Consensus 86 ---------~--~k~~~~I~id-qIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~ 152 (319)
T PRK08769 86 ---------G--DKLRTEIVIE-QVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQ 152 (319)
T ss_pred ---------c--ccccccccHH-HHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECC
Confidence 0 0000000111 1222222222 45568999999643 22333333443 33456767766665
Q ss_pred h-hHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 297 E-EVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 297 ~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
. .+... ......+.+.+++.+++.+.+.+. + . + ...+..++..++|.|+.+..+.
T Consensus 153 ~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~-~----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 153 PARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G-V----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C-C----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 3 33322 234567899999999999888753 1 1 1 2226678999999998765443
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.35 E-value=0.0012 Score=80.39 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=87.7
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CC-CCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS--PT-NFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.++||+.++.++++.|......-+.++|.+|+|||++|+.++...... .. .....+|.. +...+ ....
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l----~a~~ 244 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL----IAGA 244 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH----hhcc
Confidence 489999999999999988766777799999999999999998886210 00 012233321 11111 1000
Q ss_pred CCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh---------cccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV---------DLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
. ...+.+.....+.+.+. +++.+|++|++..-. +...+..+.. ..+ .-++|-+|.....-.
T Consensus 245 ~------~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g-~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 245 K------YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARG-ELHCIGATTLDEYRK 316 (852)
T ss_pred h------hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcC-ceEEEEeCcHHHHHH
Confidence 0 01122233333333332 468999999985321 1112222222 111 234555555443311
Q ss_pred h-------ccCcceEEeccCChhhHHHHHHHHh
Q 039262 302 L-------MEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 302 ~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
. ......+.++..+.++...++....
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123467888899999999887654
No 177
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.33 E-value=0.00092 Score=78.98 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=89.1
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCC---CCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTN---FDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.++||++++.++++.|......-+.++|.+|+|||++|+.++......... .++.+|.. +... ++.
T Consensus 187 ~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla-- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA-- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc--
Confidence 489999999999999988655667799999999999999999875211111 23444421 1111 110
Q ss_pred CCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccch----------hcccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWER----------VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
+.. -..+.+.....+.+.+ +..+.+|++|++..- .+...+..++. . ...-++|-+|...+...
T Consensus 256 G~~----~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-~-~g~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 GTK----YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-S-SGKIRVIGSTTYQEFSN 329 (758)
T ss_pred ccc----hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-h-CCCeEEEecCChHHHHH
Confidence 000 0112233333333333 345789999999532 11222222322 1 12344555554443311
Q ss_pred h-------ccCcceEEeccCChhhHHHHHHHHh
Q 039262 302 L-------MEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 302 ~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
. ...-..+.++..+.++..+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1123578999999999999998754
No 178
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0058 Score=65.66 Aligned_cols=161 Identities=7% Similarity=0.043 Sum_probs=85.6
Q ss_pred cccc-hHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 156 TVVG-LQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 156 ~~vG-r~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.++| -+..++.+.+.+..++. ....++|+.|+||||+|+.+.+...- .+..... .+... ...+.+...-.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c-~~~~~~~---~cg~C----~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFC-LERNGVE---PCGTC----TNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCC-CCCCCCC---CCCcC----HHHHHHhcCCC
Confidence 4567 67778888888877655 46699999999999999999887521 1100000 00000 00000000000
Q ss_pred CC----CccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hhh
Q 039262 234 LV----NDTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VCG 301 (885)
Q Consensus 234 ~~----~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~ 301 (885)
.+ ..+......++.. .+.+.+ .+.+=++|+|++... .....+...+. ....++.+|++|.+.. +..
T Consensus 78 pD~~~i~~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCEEEeccccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCcH
Confidence 00 0000001111111 122221 244557899998643 23444444554 4456777777776543 322
Q ss_pred -hccCcceEEeccCChhhHHHHHHHH
Q 039262 302 -LMEAHKKFKVECLSHNDAWELFRQK 326 (885)
Q Consensus 302 -~~~~~~~~~l~~L~~~e~~~Lf~~~ 326 (885)
.......+++.+++.++..+.+.+.
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2234567899999999998888653
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.0017 Score=69.95 Aligned_cols=139 Identities=18% Similarity=0.191 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC--EEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD--VVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
....+.|+|..|.|||.|++++.+.. ..... .+++++ .+....+++..+.. .....++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~---~~~~~~a~v~y~~------se~f~~~~v~a~~~-----------~~~~~Fk 171 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA---LANGPNARVVYLT------SEDFTNDFVKALRD-----------NEMEKFK 171 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH---HhhCCCceEEecc------HHHHHHHHHHHHHh-----------hhHHHHH
Confidence 36799999999999999999999997 33333 344332 22333333333321 1223444
Q ss_pred HHhccCcEEEEEccccchhc----ccccccCCCCCCCCCcEEEEecCCh---------hHhhhccCcceEEeccCChhhH
Q 039262 253 RNLKEKKFVLLLDDIWERVD----LSKVGIPLPGRLNNKSKVVFTTRSE---------EVCGLMEAHKKFKVECLSHNDA 319 (885)
Q Consensus 253 ~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~e~ 319 (885)
+.. .-=++++||++.-.. -+.+...|..-...|..||+|++.. ++.+.+...-.+.+.+.+.+..
T Consensus 172 ~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r 249 (408)
T COG0593 172 EKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETR 249 (408)
T ss_pred Hhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHH
Confidence 444 333889999964211 1222222221223455899999653 3445556667899999999999
Q ss_pred HHHHHHHhcCCccCCC
Q 039262 320 WELFRQKVGGETLNCH 335 (885)
Q Consensus 320 ~~Lf~~~~~~~~~~~~ 335 (885)
...+.+++.......+
T Consensus 250 ~aiL~kka~~~~~~i~ 265 (408)
T COG0593 250 LAILRKKAEDRGIEIP 265 (408)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999998755443333
No 180
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.014 Score=57.89 Aligned_cols=184 Identities=19% Similarity=0.191 Sum_probs=102.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEc-CccCHHHHHHHHHHHcCCCCccccccchhHHHHHH
Q 039262 173 QEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVS-KDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDI 251 (885)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 251 (885)
.++.+++.++|.-|.|||++++....... + +.++-|.+. ...+...+...|...+.......-.....+....+
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~---~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L 122 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLN---E--DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDREL 122 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcC---C--CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHH
Confidence 35778999999999999999996655541 1 112223333 34566778888888886632110111122223333
Q ss_pred HHHh-ccCc-EEEEEccccch--hcccccccC--CCCCCCCCcEEEEec--------CChhHhhhccCcce-EEeccCCh
Q 039262 252 FRNL-KEKK-FVLLLDDIWER--VDLSKVGIP--LPGRLNNKSKVVFTT--------RSEEVCGLMEAHKK-FKVECLSH 316 (885)
Q Consensus 252 ~~~l-~~k~-~LlVlDdv~~~--~~~~~~~~~--l~~~~~~gs~iivTt--------R~~~v~~~~~~~~~-~~l~~L~~ 316 (885)
.... +++| ..+++||..+. ...+.++.. +-.....--+|+..- |-......-..... |++.|+++
T Consensus 123 ~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~ 202 (269)
T COG3267 123 AALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTE 202 (269)
T ss_pred HHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcCh
Confidence 3333 3566 89999998532 222222111 110111111232211 11111111111233 89999999
Q ss_pred hhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHH
Q 039262 317 NDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGR 361 (885)
Q Consensus 317 ~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~ 361 (885)
++...+++.+......+.+---.+....|.....|.|.+|..++.
T Consensus 203 ~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 203 AETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 999999999875443222212245678899999999999977663
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=97.29 E-value=0.00017 Score=69.11 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEE
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIW 212 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 212 (885)
+.|.|+|++|+||||||+.+++...-..-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999997322356787776
No 182
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.29 E-value=0.0046 Score=65.79 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=29.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV 215 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (885)
...+.++|..|+|||+||..+++... ... ..++++++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~--~~g-~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELL--DRG-KSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH--HCC-CeEEEEEH
Confidence 37799999999999999999999872 222 35667654
No 183
>CHL00176 ftsH cell division protein; Validated
Probab=97.25 E-value=0.0034 Score=72.91 Aligned_cols=171 Identities=15% Similarity=0.163 Sum_probs=95.5
Q ss_pred CcccchHHHHHHHHHHH---ccC---------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCL---VQE---------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L---~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.++.|.++.++++.+.+ ... ..+-|.++|++|+|||++|+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p-----~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVP-----FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC-----eeeccHH----
Confidence 35788887666655443 321 24569999999999999999999876 112 2332211
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----------------cccccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 285 (885)
++. .... ..........+.+.....+.+|++||++.-. .+..+...+.. ...
T Consensus 251 ~f~----~~~~-------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 251 EFV----EMFV-------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred HHH----HHhh-------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 111 1100 0111122223344445678999999995321 11122211210 123
Q ss_pred CCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc
Q 039262 286 NKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL 352 (885)
Q Consensus 286 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (885)
.+..||.||...+.... + .-...+.++..+.++-.++++.++....... ......+++.+.|.
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~----d~~l~~lA~~t~G~ 387 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP----DVSLELIARRTPGF 387 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch----hHHHHHHHhcCCCC
Confidence 45567777766543221 1 1235788888999999999988875432111 22356788888773
No 184
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=3e-05 Score=76.26 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccc--hhhhccCCCc
Q 039262 535 TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLP--KELNALVNLK 612 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp--~~l~~L~~L~ 612 (885)
.+.+.+.|++.|| .+..+. +..+|+.|++|.||-| .|+.+- .+..+++|+.|.|+.|.|..|- ..+.+|++|+
T Consensus 17 dl~~vkKLNcwg~-~L~DIs--ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS--ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCC-CccHHH--HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3456777888888 666654 3678999999999999 888875 5788999999999999988876 4578999999
Q ss_pred EEecCCccccccccc----hhhcCCCCCcEEEee
Q 039262 613 CLNLENAWMLTVIPR----RLISSFSSLHVLRMF 642 (885)
Q Consensus 613 ~L~l~~~~~l~~lp~----~~i~~l~~L~~L~l~ 642 (885)
.|-|..|+....-+. .++..|+||+.|+-.
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 999988876555442 346778888888643
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.0005 Score=64.94 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=40.0
Q ss_pred cccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhc-cCCCcEEecCCccccccccc-hhhcCCCCCcEEE
Q 039262 563 RLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNA-LVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLR 640 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~-L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~ 640 (885)
+.-.+||++| .+..++ .+..+..|.+|.|..|.|..+-..+.. +++|+.|.+.+| .+.++-. .-+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4445666666 454444 344555666666666666555444432 344666666555 2222211 0034455555555
Q ss_pred eecccc
Q 039262 641 MFGIGY 646 (885)
Q Consensus 641 l~~~~~ 646 (885)
+.+|..
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 555443
No 186
>PRK10536 hypothetical protein; Provisional
Probab=97.16 E-value=0.0023 Score=64.27 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEE
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIW 212 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 212 (885)
.+.+|......++.++.+. .+|.+.|.+|+|||+||.++..+.. ..+.|+.++-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l-~~~~~~kIiI 109 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEAL-IHKDVDRIIV 109 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHH-hcCCeeEEEE
Confidence 3567888888888888663 5999999999999999999888631 1234554443
No 187
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0047 Score=58.78 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHccCCCc-EEEEEcCCCCcHHHHHHHHHHhhcCCCC-----------------CCCEEEEEEEcCc--
Q 039262 159 GLQSQLERVWRCLVQEPAG-IVGLYGMGGVGKTTLMALINNKFLGSPT-----------------NFDVVIWVVVSKD-- 218 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----------------~f~~~~wv~~s~~-- 218 (885)
|-++..+.|.+.+..+... .+.++|..|+||+|+|..+++..-.... ...-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567778888888777654 6899999999999999998887621111 1122333322221
Q ss_pred -cCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecC
Q 039262 219 -LRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTR 295 (885)
Q Consensus 219 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR 295 (885)
..++++. ++.+.+.... ..+++=++|+||++.. .....+...+. ....++++|++|+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~------------------~~~~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~ 140 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSP------------------SEGKYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITN 140 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-------------------TTSSSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES
T ss_pred hhhHHHHH-HHHHHHHHHH------------------hcCCceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEEC
Confidence 1222221 3333332211 1234568999999753 34455554454 4456888988888
Q ss_pred Chh-H-hhhccCcceEEeccCC
Q 039262 296 SEE-V-CGLMEAHKKFKVECLS 315 (885)
Q Consensus 296 ~~~-v-~~~~~~~~~~~l~~L~ 315 (885)
+.+ + .........+.+.+++
T Consensus 141 ~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 141 NPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GGGS-HHHHTTSEEEEE----
T ss_pred ChHHChHHHHhhceEEecCCCC
Confidence 764 2 2222334566776654
No 188
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.038 Score=62.58 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=88.3
Q ss_pred CcccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAI 228 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (885)
.+-+|.++.+++|++.|.- -.-+++.+||++|+|||.|++.++... ...|- -++++.--|..++-..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~Rkfv---R~sLGGvrDEAEIRGH- 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFV---RISLGGVRDEAEIRGH- 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEE---EEecCccccHHHhccc-
Confidence 3459999999999999852 244799999999999999999999987 33342 2233443333333110
Q ss_pred HHHcCCCCccccccchhHHHHHHHHH---hccCcEEEEEccccch---------hcccccccC-----CC----CCCCCC
Q 039262 229 GEKIGLVNDTWKNRRTEQKALDIFRN---LKEKKFVLLLDDIWER---------VDLSKVGIP-----LP----GRLNNK 287 (885)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~---------~~~~~~~~~-----l~----~~~~~g 287 (885)
...-...+--++.+. .+-+.-+++||.++.. ..+-++..| |. .-.-.=
T Consensus 396 -----------RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 -----------RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred -----------cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 000011111122222 2346679999998642 112222221 00 011122
Q ss_pred cEEE-EecCC-hh-H-hhhccCcceEEeccCChhhHHHHHHHHh
Q 039262 288 SKVV-FTTRS-EE-V-CGLMEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 288 s~ii-vTtR~-~~-v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
|.|+ |||-| -+ + +..++...++++.+.+++|-.+.-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444 34433 22 2 2334566789999999999888777665
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.13 E-value=0.0013 Score=61.22 Aligned_cols=88 Identities=20% Similarity=0.081 Sum_probs=48.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
...+.|+|.+|+||||+|+.++.... .....++++..+........... ........ ...........+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIVGGKK---ASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhhhccC---CCCCHHHHHHHHHHHH
Confidence 35799999999999999999999872 22234556655443322222111 01111000 1122222333444444
Q ss_pred ccC-cEEEEEccccch
Q 039262 256 KEK-KFVLLLDDIWER 270 (885)
Q Consensus 256 ~~k-~~LlVlDdv~~~ 270 (885)
... ..++++|+++..
T Consensus 75 ~~~~~~viiiDei~~~ 90 (148)
T smart00382 75 RKLKPDVLILDEITSL 90 (148)
T ss_pred HhcCCCEEEEECCccc
Confidence 443 489999999754
No 190
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.13 E-value=7e-05 Score=86.23 Aligned_cols=110 Identities=29% Similarity=0.323 Sum_probs=48.7
Q ss_pred CCCceeeeccCCccccccC-chhhcCCCcccEEEecCC-CccccCc----hhHhccccCCEeecCCCC-ccccc-hhh-h
Q 039262 536 CPYLLTLFLNNNKQLLIMD-RGFFQCMPRLKVLNLSGA-KQLFYFP----LVISKLVSLQHLDLSDTN-VAVLP-KEL-N 606 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~Ls~~-~~i~~lp----~~i~~L~~L~~L~L~~~~-i~~Lp-~~l-~ 606 (885)
+++|+.|.+.++..+.... ..+...+++|+.|+++++ ..+...+ .....+.+|+.|+++++. +...- ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666654443321 123455666666666652 1111111 123334556666666554 32221 111 1
Q ss_pred ccCCCcEEecCCcccccccc-chhhcCCCCCcEEEeeccc
Q 039262 607 ALVNLKCLNLENAWMLTVIP-RRLISSFSSLHVLRMFGIG 645 (885)
Q Consensus 607 ~L~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~ 645 (885)
.+++|++|.+.+|..++.-. ..+...+++|++|++..|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 24556666555553221111 0112344555555555443
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.13 E-value=0.0013 Score=65.71 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV 215 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (885)
-.++|+|..|+||||++..+.... ...|+.+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 367899999999999999999887 678888877754
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.11 E-value=0.002 Score=74.23 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=39.3
Q ss_pred CcccchHHHHHHHHHHHccC-----CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQE-----PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~-----~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|-++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999988752 34579999999999999999998875
No 193
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=0.0012 Score=67.22 Aligned_cols=74 Identities=28% Similarity=0.330 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
+...+.++|..|+|||+||.++++... ...-.++++++. ++...+...... ..... .+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~---~~g~~v~~i~~~------~l~~~l~~~~~~------~~~~~----~~l~~ 160 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLL---AKGRSVIVVTVP------DVMSRLHESYDN------GQSGE----KFLQE 160 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCCeEEEEHH------HHHHHHHHHHhc------cchHH----HHHHH
Confidence 446899999999999999999999982 233345666543 344444433311 01111 22222
Q ss_pred hccCcEEEEEcccc
Q 039262 255 LKEKKFVLLLDDIW 268 (885)
Q Consensus 255 l~~k~~LlVlDdv~ 268 (885)
+ .+.=||||||+.
T Consensus 161 l-~~~dLLiIDDlg 173 (248)
T PRK12377 161 L-CKVDLLVLDEIG 173 (248)
T ss_pred h-cCCCEEEEcCCC
Confidence 3 345699999993
No 194
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.09 E-value=0.026 Score=59.86 Aligned_cols=176 Identities=9% Similarity=0.033 Sum_probs=94.9
Q ss_pred HHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCC----c
Q 039262 163 QLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVN----D 237 (885)
Q Consensus 163 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~ 237 (885)
..+.+.+.+..+.. .-+.+.|+.|+||+++|+.++...-- ....... .++.. ...+.+...-..+. +
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC-~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~p 81 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC-QTPQGDQ---PCGQC----HSCHLFQAGNHPDFHILEP 81 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC-CCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEcc
Confidence 34567777766554 56779999999999999999887521 0100000 00000 11111110000000 0
Q ss_pred -cccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhhh-ccCcc
Q 039262 238 -TWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGL-MEAHK 307 (885)
Q Consensus 238 -~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~ 307 (885)
.......++ +..+.+.+ .+++=++|+|+++.. .....+...+. ....++.+|++|.+. .+... .....
T Consensus 82 ~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 82 IDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred ccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhce
Confidence 000111222 22222332 245568889998653 33444444444 345566777776654 44322 33456
Q ss_pred eEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 308 KFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 308 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
.+.+.+++.++..+.+....... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 88999999999999888764211 112567788999999644
No 195
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.025 Score=59.76 Aligned_cols=176 Identities=13% Similarity=0.057 Sum_probs=94.7
Q ss_pred HHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC-----
Q 039262 162 SQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV----- 235 (885)
Q Consensus 162 ~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~----- 235 (885)
...+++.+.+..++. ..+.+.|+.|+||+++|+.++...- ...-+. -.++.. ..-+.+...-..+
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll--C~~~~~---~~Cg~C----~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL--CQNYQS---EACGFC----HSCELMQSGNHPDLHVIK 80 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc--CCCCCC---CCCCCC----HHHHHHHcCCCCCEEEEe
Confidence 345566666666554 4788999999999999999888652 111000 001110 0000110000000
Q ss_pred Cc-cccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHh-hhccC
Q 039262 236 ND-TWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVC-GLMEA 305 (885)
Q Consensus 236 ~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~-~~~~~ 305 (885)
.+ .......++. ..+.+.+ .+++=++|+|++... .....+...+. ....++.+|++|.+. .+. +....
T Consensus 81 p~~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SR 158 (319)
T PRK06090 81 PEKEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSR 158 (319)
T ss_pred cCcCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhc
Confidence 00 0001112222 2222332 234458889998643 33444444444 345567666666554 443 33334
Q ss_pred cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 306 HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 306 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
...+.+.+++.+++.+.+..... + .+..++..++|.|+.+..+
T Consensus 159 Cq~~~~~~~~~~~~~~~L~~~~~------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 159 CQQWVVTPPSTAQAMQWLKGQGI------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ceeEeCCCCCHHHHHHHHHHcCC------c-----hHHHHHHHcCCCHHHHHHH
Confidence 56789999999999998865311 1 1356789999999977544
No 196
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.08 E-value=0.0032 Score=66.96 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=64.4
Q ss_pred HHHHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCE-EEEEEEcCc-cCHHHHHHHHHHHcCCCCcccc
Q 039262 164 LERVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDV-VIWVVVSKD-LRLENIQEAIGEKIGLVNDTWK 240 (885)
Q Consensus 164 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~ 240 (885)
..++++.+.- ..-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+. ..+.++++.+...+.....+..
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~ 197 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRP 197 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCC
Confidence 3446776653 3345679999999999999999999872 233344 477777664 4678888888876654321100
Q ss_pred c---cchhHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 241 N---RRTEQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 241 ~---~~~~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
. ...........+++ ++++++||+|++-
T Consensus 198 ~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 198 PDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 0 01111111222222 4799999999983
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.05 E-value=0.023 Score=67.97 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=39.9
Q ss_pred CCcccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 154 DATVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.+.+|.++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999988763 245689999999999999999999876
No 198
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.04 E-value=0.00014 Score=63.99 Aligned_cols=87 Identities=29% Similarity=0.367 Sum_probs=77.4
Q ss_pred ceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeec
Q 039262 516 KVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDL 593 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (885)
.+..+++++|.+..+|. ...++.+++|++.+| .+..+|.. +..|+.||.|+++.| .+...|.-|..|.+|-+|+.
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 56778899998888765 256778999999999 89999998 899999999999999 89999999999999999999
Q ss_pred CCCCccccchhh
Q 039262 594 SDTNVAVLPKEL 605 (885)
Q Consensus 594 ~~~~i~~Lp~~l 605 (885)
.+|.+..+|-.+
T Consensus 131 ~~na~~eid~dl 142 (177)
T KOG4579|consen 131 PENARAEIDVDL 142 (177)
T ss_pred CCCccccCcHHH
Confidence 999999998653
No 199
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.02 E-value=0.0015 Score=59.98 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|+|.+|+||||+|+.+++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999997
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.006 Score=73.43 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=93.0
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++.|.++.+++|.+.+.- ...+.|.++|.+|+|||+||+.+++.. ...| +.+..+
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~------ 246 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGP------ 246 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecH------
Confidence 478999999998877632 234678899999999999999999986 2222 222211
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------------cccccccCCCCCCCCCcE
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------------DLSKVGIPLPGRLNNKSK 289 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~~~~~gs~ 289 (885)
.+ .... ...........+.....+.+.+|++||++... ....+...+......+..
T Consensus 247 ~i----~~~~-------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 EI----MSKY-------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred HH----hccc-------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 11 1111 01111222222333334567899999985321 011122222111123334
Q ss_pred EEE-ecCChh-Hhhhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 290 VVF-TTRSEE-VCGLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 290 iiv-TtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
++| ||.... +...+ .-...+.+...+.++-.+++...........+. ....+++.+.|..-+
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~----~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDV----DLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcccc----CHHHHHHhCCCCCHH
Confidence 444 554332 21111 113457788888888888888655332211111 256788888886543
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.99 E-value=0.0027 Score=61.17 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhcc
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKE 257 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 257 (885)
.|.|+|++|+||||||+.+.....-..-+.|...|-.. +...+.++....+...+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----------------------WQERDDDDMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----------------------cccCCHHHHHHHHHHHHhC
Confidence 58999999999999999998775211224455555211 1122334455555666666
Q ss_pred CcEEEEEccccc
Q 039262 258 KKFVLLLDDIWE 269 (885)
Q Consensus 258 k~~LlVlDdv~~ 269 (885)
.+ .|+|+...
T Consensus 59 ~~--wIidg~~~ 68 (171)
T PRK07261 59 HD--WIIDGNYS 68 (171)
T ss_pred CC--EEEcCcch
Confidence 55 67788643
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.024 Score=61.43 Aligned_cols=145 Identities=23% Similarity=0.229 Sum_probs=89.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH-
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR- 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~- 253 (885)
+...+.+.|++|+|||+||..++.. ..|+.+--++..+ ..+.++.....++..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~---------------------miG~sEsaKc~~i~k~ 590 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPED---------------------MIGLSESAKCAHIKKI 590 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHH---------------------ccCccHHHHHHHHHHH
Confidence 4567889999999999999999776 4677554432211 122233333333333
Q ss_pred ---HhccCcEEEEEccccchhcccccccC------------CCCCCCCCcE--EEEecCChhHhhhccC----cceEEec
Q 039262 254 ---NLKEKKFVLLLDDIWERVDLSKVGIP------------LPGRLNNKSK--VVFTTRSEEVCGLMEA----HKKFKVE 312 (885)
Q Consensus 254 ---~l~~k~~LlVlDdv~~~~~~~~~~~~------------l~~~~~~gs~--iivTtR~~~v~~~~~~----~~~~~l~ 312 (885)
..+..=-.||+||+....+|-.++.. +.....+|-| |+-||....|...|+- ...|.++
T Consensus 591 F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vp 670 (744)
T KOG0741|consen 591 FEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVP 670 (744)
T ss_pred HHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecC
Confidence 34455679999999766666555432 2212234444 4447777778777763 3578899
Q ss_pred cCCh-hhHHHHHHHHhcCCccCCCchhHHHHHHHHHHh
Q 039262 313 CLSH-NDAWELFRQKVGGETLNCHPDILELAETVAKEC 349 (885)
Q Consensus 313 ~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c 349 (885)
.++. ++..+.++..- ...+.+...++++.+.+|
T Consensus 671 nl~~~~~~~~vl~~~n----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 671 NLTTGEQLLEVLEELN----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred ccCchHHHHHHHHHcc----CCCcchhHHHHHHHhccc
Confidence 9987 77777776542 112344566677777766
No 203
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0038 Score=69.44 Aligned_cols=187 Identities=15% Similarity=0.173 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
++++|-+.....|...+..+.. .-....|.-|+||||+|+.++...- ..+ + ....+...-...++|...-.
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalN--C~~-----~-~~~ePC~~C~~Ck~I~~g~~ 87 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALN--CEN-----G-PTAEPCGKCISCKEINEGSL 87 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhc--CCC-----C-CCCCcchhhhhhHhhhcCCc
Confidence 3579999999999999987644 4567899999999999999988761 111 0 11111122222233332210
Q ss_pred CCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEcccc--chhcccccccCCCCCCCCCcEEEEecC-ChhHh-h
Q 039262 234 LVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIW--ERVDLSKVGIPLPGRLNNKSKVVFTTR-SEEVC-G 301 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~--~~~~~~~~~~~l~~~~~~gs~iivTtR-~~~v~-~ 301 (885)
.+. +.......+ -.+.+.+.. .++.=+.|+|+|. +...|..+...+. ........|..|. .+.+. .
T Consensus 88 ~DviEiDaASn~gVd-diR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE-EPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 88 IDVIEIDAASNTGVD-DIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE-EPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred ccchhhhhhhccChH-HHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc-cCccCeEEEEecCCcCcCchh
Confidence 100 000111111 222233332 2344589999995 3455666666664 3344555555444 44443 3
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL 354 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 354 (885)
.......|.++.++.++-...+...+..+....+ .+....|++..+|..-
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 3445678999999999999999988866553333 3446777777777543
No 204
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.92 E-value=0.053 Score=58.43 Aligned_cols=199 Identities=16% Similarity=0.195 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHH-HHHHHhhcCCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHcCCC
Q 039262 160 LQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLM-ALINNKFLGSPTNFDVVIWVVVSKD---LRLENIQEAIGEKIGLV 235 (885)
Q Consensus 160 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~ 235 (885)
|.+.+++|..||.+..-.+|.|.|+-|+||+.|+ .++.++. +.++.+.+.+- .+-......++.++|..
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~ 73 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYF 73 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCC
Confidence 5677899999999988889999999999999999 7776664 11666665442 23344555555555431
Q ss_pred C-----------------------ccccccchhHHHHH-------HHH-------------------Hhc---cCcEEEE
Q 039262 236 N-----------------------DTWKNRRTEQKALD-------IFR-------------------NLK---EKKFVLL 263 (885)
Q Consensus 236 ~-----------------------~~~~~~~~~~~~~~-------l~~-------------------~l~---~k~~LlV 263 (885)
. ..+......++... |++ +|. .++-++|
T Consensus 74 PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVV 153 (431)
T PF10443_consen 74 PVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVV 153 (431)
T ss_pred cchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEE
Confidence 1 01111111111111 111 011 1356899
Q ss_pred Eccccch-----------hcccccccCCCCCCCCCcEEEEecCChhHhh----hcc--CcceEEeccCChhhHHHHHHHH
Q 039262 264 LDDIWER-----------VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG----LME--AHKKFKVECLSHNDAWELFRQK 326 (885)
Q Consensus 264 lDdv~~~-----------~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~----~~~--~~~~~~l~~L~~~e~~~Lf~~~ 326 (885)
+|+.-.. .+|... + -.++-.+||++|-+..... .+. ..+.+.|.-.+.+-|..+...+
T Consensus 154 IdnF~~k~~~~~~iy~~laeWAa~---L--v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~ 228 (431)
T PF10443_consen 154 IDNFLHKAEENDFIYDKLAEWAAS---L--VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQ 228 (431)
T ss_pred EcchhccCcccchHHHHHHHHHHH---H--HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHH
Confidence 9998432 234321 2 2345678999888765543 232 2356788999999999999998
Q ss_pred hcCCccC------------CC-----chhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChH
Q 039262 327 VGGETLN------------CH-----PDILELAETVAKECGGLPLALITIGRAMSCKRMPE 370 (885)
Q Consensus 327 ~~~~~~~------------~~-----~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~ 370 (885)
....... .+ ....+-....++..||--.-+..+++.++...+++
T Consensus 229 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 229 LDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred hcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 8543100 00 12344456777888999999999999988765554
No 205
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00043 Score=68.39 Aligned_cols=86 Identities=28% Similarity=0.363 Sum_probs=45.6
Q ss_pred hcCCCcccEEEecCC--CccccCchhHhccccCCEeecCCCCccccc--hhhhccCCCcEEecCCcccccccc---chhh
Q 039262 558 FQCMPRLKVLNLSGA--KQLFYFPLVISKLVSLQHLDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIP---RRLI 630 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~--~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp---~~~i 630 (885)
|..|++|+.|.+|.| +....++-...++++|++|+|++|+|+.+. ..+..+.||..|++.+|.... +- ..++
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 344555666666655 333334444445566666666666655432 224556667777777764322 21 2234
Q ss_pred cCCCCCcEEEeecc
Q 039262 631 SSFSSLHVLRMFGI 644 (885)
Q Consensus 631 ~~l~~L~~L~l~~~ 644 (885)
.-+++|..|+-..+
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 45666666655543
No 206
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.84 E-value=0.012 Score=60.40 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=100.7
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH-HHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE-NIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~ 229 (885)
..++|-.++..++-.++.. +...-|.|+|+.|.|||+|......+..+.. +..+-|........+ -.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~---E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENG---ENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcC---CeEEEEEECccchhhHHHHHHHH
Confidence 3589999998888888765 4666788999999999999988877742223 334444444433322 2345555
Q ss_pred HHcCCCCc--cccccchhHHHHHHHHHhcc------CcEEEEEccccchh------cccccccCCCCCCCCCcEEEEecC
Q 039262 230 EKIGLVND--TWKNRRTEQKALDIFRNLKE------KKFVLLLDDIWERV------DLSKVGIPLPGRLNNKSKVVFTTR 295 (885)
Q Consensus 230 ~~l~~~~~--~~~~~~~~~~~~~l~~~l~~------k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR 295 (885)
.++..... .....+..+....+...|+. -++++|+|.++--. -+-.+...-.....+-+-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 55432111 11233444555556666653 36899998875210 011111111113345666778999
Q ss_pred Chh-------HhhhccCcceEEeccCChhhHHHHHHHHh
Q 039262 296 SEE-------VCGLMEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 296 ~~~-------v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
-.- |-.......++-+++++-++...+++...
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 643 33333344466778888888888888766
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.80 E-value=0.022 Score=68.65 Aligned_cols=171 Identities=17% Similarity=0.181 Sum_probs=94.7
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++.|.+..+++|.+.+.- ...+-|.++|++|+|||++|+.+++.. ...| +.+...
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f-----i~v~~~---- 521 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF-----IAVRGP---- 521 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE-----EEEehH----
Confidence 467888888877776531 134568899999999999999999986 2222 222211
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--------------cccccccCCCC-CCCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--------------DLSKVGIPLPG-RLNNK 287 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------------~~~~~~~~l~~-~~~~g 287 (885)
++.... .+.+.......+...-...+.+|+||+++... ....+...+.+ ....+
T Consensus 522 ----~l~~~~-------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 ----EILSKW-------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred ----HHhhcc-------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 111111 11122222222223334567999999985321 01111111210 11234
Q ss_pred cEEEEecCChhHhhh--c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 288 SKVVFTTRSEEVCGL--M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 288 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.-||.||...+.... . .-...+.+...+.++-.++|...........+.+ ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 456667765543221 1 2345678888899999999987664433222223 466777787754
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.044 Score=58.73 Aligned_cols=177 Identities=8% Similarity=0.009 Sum_probs=94.5
Q ss_pred HHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC-----CC
Q 039262 163 QLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL-----VN 236 (885)
Q Consensus 163 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-----~~ 236 (885)
.-+++.+.+..+++ .-+.+.|+.|+||+|+|..++....-. ..-+.. .++... ..+.+...-.. ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~-~~~~~~---~Cg~C~----sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ-QPQGHK---SCGHCR----GCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC-CCCCCC---CCCCCH----HHHHHHcCCCCCEEEEec
Confidence 44667777776654 467899999999999999988775210 000000 011100 00000000000 00
Q ss_pred ccc-cccchhHHHHHHHHHhc-----cCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhhh-ccCc
Q 039262 237 DTW-KNRRTEQKALDIFRNLK-----EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGL-MEAH 306 (885)
Q Consensus 237 ~~~-~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~ 306 (885)
+.. .....++ ++.+.+.+. +++=++|+|+++.. .....+...+. ....++.+|.+|.+. .+... ....
T Consensus 82 ~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 82 EKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred ccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhcc
Confidence 000 0011222 222333332 45668999998643 33444444444 334566666666654 34322 3345
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
..+.+.+++.+++.+.+.+..+. + .+.+..++..++|.|....
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~-----~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTM-----S---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCC-----C---HHHHHHHHHHcCCCHHHHH
Confidence 67899999999999888654321 1 2236788999999996543
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.78 E-value=0.0013 Score=68.14 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV 215 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 215 (885)
....+.++|..|+|||+||.++++... ...-..+++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 456899999999999999999999872 221345667664
No 210
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.0056 Score=62.11 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=50.7
Q ss_pred HHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcccc
Q 039262 163 QLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWK 240 (885)
Q Consensus 163 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 240 (885)
.+..+.+...+ .+...+.++|.+|+|||+||.++++... ..-..++++++ .++...+-..... .
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~---~~g~~v~~it~------~~l~~~l~~~~~~-----~ 149 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELL---LRGKSVLIITV------ADIMSAMKDTFSN-----S 149 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEH------HHHHHHHHHHHhh-----c
Confidence 34444444432 2345789999999999999999999972 22345566643 4444444443321 1
Q ss_pred ccchhHHHHHHHHHhccCcEEEEEccccc
Q 039262 241 NRRTEQKALDIFRNLKEKKFVLLLDDIWE 269 (885)
Q Consensus 241 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 269 (885)
..+. ..+.+.+. +.=+||+||+..
T Consensus 150 ~~~~----~~~l~~l~-~~dlLvIDDig~ 173 (244)
T PRK07952 150 ETSE----EQLLNDLS-NVDLLVIDEIGV 173 (244)
T ss_pred cccH----HHHHHHhc-cCCEEEEeCCCC
Confidence 1111 12333444 344888899943
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.77 E-value=0.062 Score=57.46 Aligned_cols=92 Identities=14% Similarity=0.182 Sum_probs=57.3
Q ss_pred cCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCC-hhHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCcc
Q 039262 257 EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRS-EEVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETL 332 (885)
Q Consensus 257 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 332 (885)
+++=++|+|+++.. .....+...+. ....++.+|++|.+ ..+... ......+.+.+++.++..+.+.+. + .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~-~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G-V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C-C--
Confidence 34458889998643 34455555554 44556666655554 444322 334568899999999999988765 1 1
Q ss_pred CCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 333 NCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 333 ~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
++ ...++..++|.|..+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 2335778899997654443
No 212
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.77 E-value=0.043 Score=54.11 Aligned_cols=171 Identities=18% Similarity=0.283 Sum_probs=96.1
Q ss_pred CcccchHHHHHH---HHHHHccC------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHH
Q 039262 155 ATVVGLQSQLER---VWRCLVQE------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQ 225 (885)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (885)
++++|.++.+.+ |++.|.+. ..+-|..+|++|.|||.+|+++++.. .+ .| +.+.. .
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-kv--p~-----l~vka-------t 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-KV--PL-----LLVKA-------T 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-CC--ce-----EEech-------H
Confidence 357898876543 56666652 56789999999999999999999987 22 22 11111 1
Q ss_pred HHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccch----------hcc----cccccCCCC-CCCCCcE
Q 039262 226 EAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWER----------VDL----SKVGIPLPG-RLNNKSK 289 (885)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~----------~~~----~~~~~~l~~-~~~~gs~ 289 (885)
.-|.+..+ +-...+..+.++- +.-++++.+|.++.. .+. ..+..-+.+ ..+.|..
T Consensus 186 ~liGehVG---------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 186 ELIGEHVG---------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 11111111 1122233333332 246899999987531 011 111111110 2355766
Q ss_pred EEEecCChhHhhhc-c--CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 290 VVFTTRSEEVCGLM-E--AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 290 iivTtR~~~v~~~~-~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.|-.|.+.++.... . -.+.++..--+++|-..++...+..-..+.+.. .+.++++.+|..
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~----~~~~~~~t~g~S 319 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD----LRYLAAKTKGMS 319 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC----HHHHHHHhCCCC
Confidence 77777766654321 1 234566666788888899888875443333222 466677777653
No 213
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.75 E-value=0.004 Score=60.07 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=49.8
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.++||-|+.++++.-...+++.+-+.|.||+|+||||-+..+++.. -...+-+.+.-+.+|+.-.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRG 91 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERG 91 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccc
Confidence 3589999999999888888899999999999999999999998887 2222334555455554433
No 214
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.75 E-value=0.014 Score=65.68 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=91.7
Q ss_pred CcccchHHHHHHHHHHHc---c-------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q-------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~-------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
.++.|.+..++.+.+... . ...+-|.++|++|+|||.+|+.+++.. .-.| +-+..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~------- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGK------- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHH-------
Confidence 357788877766654321 1 234678999999999999999999987 2222 1122111
Q ss_pred HHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc--------------ccccccCCCCCCCCCcEE
Q 039262 225 QEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD--------------LSKVGIPLPGRLNNKSKV 290 (885)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~~~l~~~~~~gs~i 290 (885)
+.... .+.+.......+...-...+++|++|+++.... ...+...+. ....+.-|
T Consensus 295 ---l~~~~-------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-~~~~~V~v 363 (489)
T CHL00195 295 ---LFGGI-------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-EKKSPVFV 363 (489)
T ss_pred ---hcccc-------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-cCCCceEE
Confidence 11111 111111122222222234789999999963210 001111111 22334445
Q ss_pred EEecCChhH-h----hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 291 VFTTRSEEV-C----GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 291 ivTtR~~~v-~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
|.||.+.+. . ....-...+.++.-+.++-.++|..+.......... ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 667765532 1 111234577888889999999998887543211101 112466777776654
No 215
>PRK08181 transposase; Validated
Probab=96.74 E-value=0.0016 Score=67.19 Aligned_cols=72 Identities=24% Similarity=0.261 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
..-+.++|.+|+|||.||..+.+... .....++|+++ .++...+..... ..+... ..+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~---~~g~~v~f~~~------~~L~~~l~~a~~-------~~~~~~----~l~~l 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALI---ENGWRVLFTRT------TDLVQKLQVARR-------ELQLES----AIAKL 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHH---HcCCceeeeeH------HHHHHHHHHHHh-------CCcHHH----HHHHH
Confidence 45699999999999999999998762 22234556543 345554433221 111111 22222
Q ss_pred ccCcEEEEEcccc
Q 039262 256 KEKKFVLLLDDIW 268 (885)
Q Consensus 256 ~~k~~LlVlDdv~ 268 (885)
. +.=|||+||+.
T Consensus 166 ~-~~dLLIIDDlg 177 (269)
T PRK08181 166 D-KFDLLILDDLA 177 (269)
T ss_pred h-cCCEEEEeccc
Confidence 2 34599999994
No 216
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.68 E-value=0.0022 Score=67.83 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=40.4
Q ss_pred cccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+++|.++.++++++++.. ...+++.++|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999864 245799999999999999999999987
No 217
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.66 E-value=0.072 Score=60.21 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=115.0
Q ss_pred cccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcC-----CCCCCCEEEEEEEcCccCHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLG-----SPTNFDVVIWVVVSKDLRLENIQ 225 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-----~~~~f~~~~wv~~s~~~~~~~~~ 225 (885)
.+-+||.+..+|-+.+.. +..+.+.|.|.+|+|||..+..|.+.... ....|++ +.|..-.-....+++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHHHH
Confidence 466899999999888754 23458999999999999999999986521 1233442 345555556789999
Q ss_pred HHHHHHcCCCCccccccchhHHHHHHHHHhc-----cCcEEEEEccccch-----hcccccccCCCCCCCCCcEEEEecC
Q 039262 226 EAIGEKIGLVNDTWKNRRTEQKALDIFRNLK-----EKKFVLLLDDIWER-----VDLSKVGIPLPGRLNNKSKVVFTTR 295 (885)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR 295 (885)
..|..++.... .........+..+.. .+..++++|+++.. ..+..+.. +| ..++||.+|-+=
T Consensus 476 ~~I~~~lsg~~-----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-Wp--t~~~sKLvvi~I 547 (767)
T KOG1514|consen 476 EKIWEALSGER-----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-WP--TLKNSKLVVIAI 547 (767)
T ss_pred HHHHHhcccCc-----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-CC--cCCCCceEEEEe
Confidence 99999997643 333444455555544 35788889987532 11222211 11 245677665432
Q ss_pred Ch-----------hHhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 296 SE-----------EVCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 296 ~~-----------~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
.. .|+..+ ....+...|.+.++-.+....+..+...-.....+=++++|+.-.|-.-.|+.+.
T Consensus 548 aNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11 112221 1234667777888877777776644322222233344555555555555554443
No 218
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.051 Score=63.35 Aligned_cols=103 Identities=23% Similarity=0.342 Sum_probs=63.6
Q ss_pred cccchHHHHHHHHHHHcc---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (885)
.++|-+..++.+.+.+.. ...++....|+.|+|||-||++++... -+.=+..+-+..|.-... .
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~Ek----H 564 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEK----H 564 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHH----H
Confidence 589999999999988853 245688889999999999999999887 111134444444432221 1
Q ss_pred HHHHHcCCCCccccccchhHHHHHHHHHhccCcE-EEEEccccc
Q 039262 227 AIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKF-VLLLDDIWE 269 (885)
Q Consensus 227 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 269 (885)
.+.+-+|.+.+- . ..++ .-.|-+.++.++| ++.||+|..
T Consensus 565 sVSrLIGaPPGY-V--Gyee-GG~LTEaVRr~PySViLlDEIEK 604 (786)
T COG0542 565 SVSRLIGAPPGY-V--GYEE-GGQLTEAVRRKPYSVILLDEIEK 604 (786)
T ss_pred HHHHHhCCCCCC-c--eecc-ccchhHhhhcCCCeEEEechhhh
Confidence 222223322110 1 1111 2345556677877 788899963
No 219
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.63 E-value=0.014 Score=69.93 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHHcc------C---CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ------E---PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~---~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|-+..++.+.+.+.. + ...++.++|+.|+|||+||+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 4578989888888887753 1 23468999999999999999998876
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.025 Score=63.39 Aligned_cols=164 Identities=20% Similarity=0.198 Sum_probs=86.5
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++=|.|+.+.+|-+.+.- ...+-|..+|++|+|||++|+++++.. .-.| +.+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp---- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP---- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----
Confidence 445677777777665532 356789999999999999999999987 3344 222221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc-------------ccccccCCCCCCCC-Cc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD-------------LSKVGIPLPGRLNN-KS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~~~~~-gs 288 (885)
++.... -+.++......+++.-+--+.++.||.++.... +..+..-+.+-... +-
T Consensus 503 ----EL~sk~-------vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V 571 (693)
T KOG0730|consen 503 ----ELFSKY-------VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNV 571 (693)
T ss_pred ----HHHHHh-------cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcE
Confidence 111111 112222223333333334568888888753210 11111122211111 22
Q ss_pred EEEE-ecCChhHhh-hcc---CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHH
Q 039262 289 KVVF-TTRSEEVCG-LME---AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELA 342 (885)
Q Consensus 289 ~iiv-TtR~~~v~~-~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~ 342 (885)
-||- |-|...+-. .+. -...+.++.-+.+.-.++|+.++.......+-++.+++
T Consensus 572 ~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 572 LVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred EEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 2333 334443321 122 34566777767777789999988665544444544444
No 221
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.59 E-value=0.0061 Score=59.89 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=51.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCccc-cccchhHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDTW-KNRRTEQKALDIFR 253 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 253 (885)
++||.++|+.|+||||.+.+++.... ..-..+..++... .....+-++..++.++.+.... ...+..+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~---~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLK---LKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHh---hccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 36899999999999998888887772 2244567777543 2345566777888887542111 11123333333333
Q ss_pred HhccCc-EEEEEccc
Q 039262 254 NLKEKK-FVLLLDDI 267 (885)
Q Consensus 254 ~l~~k~-~LlVlDdv 267 (885)
....++ =++++|=.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333333 36667765
No 222
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.59 E-value=0.0019 Score=58.37 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 223
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.56 E-value=0.075 Score=57.48 Aligned_cols=41 Identities=17% Similarity=0.427 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 160 LQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 160 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|+...+.|.+.+.+ +...+|+|.|.-|+||||+.+.+.+..
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34556677777765 367799999999999999999999988
No 224
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.55 E-value=0.00052 Score=78.97 Aligned_cols=115 Identities=24% Similarity=0.258 Sum_probs=63.1
Q ss_pred hcCCCcccEEEecCCCcccc--CchhHhccccCCEeecCCC--Cccccc----hhhhccCCCcEEecCCccccccccchh
Q 039262 558 FQCMPRLKVLNLSGAKQLFY--FPLVISKLVSLQHLDLSDT--NVAVLP----KELNALVNLKCLNLENAWMLTVIPRRL 629 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~--~i~~Lp----~~l~~L~~L~~L~l~~~~~l~~lp~~~ 629 (885)
...++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+...+ .....+++|+.|++++|..++..--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 34467777777777755555 3345566777888887763 221111 233455777777777775333322111
Q ss_pred h-cCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEeccc
Q 039262 630 I-SSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNS 677 (885)
Q Consensus 630 i-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 677 (885)
+ ..+++|++|.+..|....+. ....-...+++|+.|+++.+..
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~-----gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDE-----GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhhCCCcceEccCCCCccchh-----HHHHHHHhcCcccEEeeecCcc
Confidence 2 23677777775555421211 1222234566777777775543
No 225
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.54 E-value=0.00088 Score=66.00 Aligned_cols=83 Identities=24% Similarity=0.205 Sum_probs=39.4
Q ss_pred CCCceeeeccCCccccccC---chhhcCCCcccEEEecCCCccc----cCch-------hHhccccCCEeecCCCCc-cc
Q 039262 536 CPYLLTLFLNNNKQLLIMD---RGFFQCMPRLKVLNLSGAKQLF----YFPL-------VISKLVSLQHLDLSDTNV-AV 600 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~---~~~~~~l~~Lr~L~Ls~~~~i~----~lp~-------~i~~L~~L~~L~L~~~~i-~~ 600 (885)
+..+..++|++|..-+.-. ...+.+-++|++.++++- ... ++|+ .+-+|++|+..+||.|-+ ..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4566667777763111111 112344566666666654 221 2232 233556666666666644 12
Q ss_pred cc----hhhhccCCCcEEecCCc
Q 039262 601 LP----KELNALVNLKCLNLENA 619 (885)
Q Consensus 601 Lp----~~l~~L~~L~~L~l~~~ 619 (885)
.| .-+.+-++|.||.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 22 22344455555555555
No 226
>PRK09183 transposase/IS protein; Provisional
Probab=96.54 E-value=0.0026 Score=65.68 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+.|+|.+|+|||+||..+.+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998775
No 227
>PRK04296 thymidine kinase; Provisional
Probab=96.53 E-value=0.003 Score=61.99 Aligned_cols=113 Identities=14% Similarity=0.040 Sum_probs=62.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
.++.|+|..|.||||+|..++.+.. .+-..++.+. ..++.+.....++++++............+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999888872 2233344342 1112222233456666543321111223334444444 23
Q ss_pred cCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEEecCChh
Q 039262 257 EKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVFTTRSEE 298 (885)
Q Consensus 257 ~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iivTtR~~~ 298 (885)
++.-+||+|.+.. ..+..++...+ ...|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l---~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL---DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH---HHcCCeEEEEecCcc
Confidence 3455899999842 12122222221 246788999998843
No 228
>PRK06526 transposase; Provisional
Probab=96.51 E-value=0.0029 Score=64.89 Aligned_cols=26 Identities=27% Similarity=0.215 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..-+.|+|.+|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 44578999999999999999998876
No 229
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.50 E-value=0.011 Score=60.59 Aligned_cols=91 Identities=21% Similarity=0.353 Sum_probs=56.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC-CEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNF-DVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT---- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~---- 244 (885)
.-.-++|.|.+|+|||||++.+++.. ..+| +.++++-+++.. .+.++.+++.+.-...... ..+...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHH
Confidence 44679999999999999999999997 3334 466777777654 3455666655432211100 011111
Q ss_pred --hHHHHHHHHHh---ccCcEEEEEcccc
Q 039262 245 --EQKALDIFRNL---KEKKFVLLLDDIW 268 (885)
Q Consensus 245 --~~~~~~l~~~l---~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dslt 173 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNIF 173 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeChh
Confidence 11222344444 3889999999983
No 230
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.49 E-value=0.063 Score=55.76 Aligned_cols=55 Identities=27% Similarity=0.284 Sum_probs=35.2
Q ss_pred HHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 162 SQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 162 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
+-++++...+.. -+-|.+.|.+|+|||++|+.++... .. ..+.+++....+..++
T Consensus 9 ~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 334455555544 2456799999999999999998754 11 2445565555554444
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.0018 Score=64.01 Aligned_cols=104 Identities=29% Similarity=0.325 Sum_probs=77.4
Q ss_pred ccceeEEEeecCCcccCCCCCCCCCceeeeccCCc--cccccCchhhcCCCcccEEEecCCCccccCc--hhHhccccCC
Q 039262 514 WEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNK--QLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP--LVISKLVSLQ 589 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp--~~i~~L~~L~ 589 (885)
...+.++++.+..+..+..++.+++|+.|.++.|. ....++.- ...+++|++|+|++| .+..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCC-ccccccccchhhhhcchh
Confidence 34777888888888888888999999999999983 22333332 456699999999999 665421 1356788899
Q ss_pred EeecCCCCccccc----hhhhccCCCcEEecCCc
Q 039262 590 HLDLSDTNVAVLP----KELNALVNLKCLNLENA 619 (885)
Q Consensus 590 ~L~L~~~~i~~Lp----~~l~~L~~L~~L~l~~~ 619 (885)
.|++..|....+- ..+.-+++|++|+-...
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 9999999776664 23567789999986655
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.45 E-value=0.012 Score=59.72 Aligned_cols=46 Identities=26% Similarity=0.335 Sum_probs=35.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
.-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHH
Confidence 356999999999999999999988762 234678999887 5554443
No 233
>PRK04132 replication factor C small subunit; Provisional
Probab=96.39 E-value=0.055 Score=64.41 Aligned_cols=151 Identities=11% Similarity=0.054 Sum_probs=92.5
Q ss_pred CCCCcHHHHHHHHHHhhcCCCCCC-CEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEE
Q 039262 184 MGGVGKTTLMALINNKFLGSPTNF-DVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVL 262 (885)
Q Consensus 184 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~Ll 262 (885)
+.++||||+|..++++.- .+.+ ..++-+++++......+. +++..+.... +. -..+.-++
T Consensus 574 Ph~lGKTT~A~ala~~l~--g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~------~~----------~~~~~KVv 634 (846)
T PRK04132 574 PTVLHNTTAALALARELF--GENWRHNFLELNASDERGINVIR-EKVKEFARTK------PI----------GGASFKII 634 (846)
T ss_pred CCcccHHHHHHHHHHhhh--cccccCeEEEEeCCCcccHHHHH-HHHHHHHhcC------Cc----------CCCCCEEE
Confidence 788999999999999861 1223 256777777765555443 3333321100 00 01245799
Q ss_pred EEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhhh-ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchh
Q 039262 263 LLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGL-MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDI 338 (885)
Q Consensus 263 VlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l 338 (885)
|+|+++.. .....+...+. .....+++|.+|.+. .+... ......+++.+++.++....+...+.......+
T Consensus 635 IIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--- 710 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--- 710 (846)
T ss_pred EEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---
Confidence 99999754 34455555444 333456666655543 33322 233568899999999999888877643322222
Q ss_pred HHHHHHHHHHhCCchhHHH
Q 039262 339 LELAETVAKECGGLPLALI 357 (885)
Q Consensus 339 ~~~~~~i~~~c~GlPLai~ 357 (885)
.+....|++.++|.+..+.
T Consensus 711 ~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 711 EEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHHHcCCCHHHHH
Confidence 4468899999999885543
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.37 E-value=0.0026 Score=61.48 Aligned_cols=73 Identities=25% Similarity=0.409 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
...-+.++|..|+|||.||..+.+... ... -.+.|+.+ .+++..+-..- ...... .+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~--~~g-~~v~f~~~------~~L~~~l~~~~-------~~~~~~----~~~~~ 105 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI--RKG-YSVLFITA------SDLLDELKQSR-------SDGSYE----ELLKR 105 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH--HTT---EEEEEH------HHHHHHHHCCH-------CCTTHC----HHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc--cCC-cceeEeec------Cceeccccccc-------cccchh----hhcCc
Confidence 456799999999999999999998873 222 34566653 34444443221 111111 22333
Q ss_pred hccCcEEEEEcccc
Q 039262 255 LKEKKFVLLLDDIW 268 (885)
Q Consensus 255 l~~k~~LlVlDdv~ 268 (885)
+.+ -=||||||+-
T Consensus 106 l~~-~dlLilDDlG 118 (178)
T PF01695_consen 106 LKR-VDLLILDDLG 118 (178)
T ss_dssp HHT-SSCEEEETCT
T ss_pred ccc-ccEecccccc
Confidence 333 3478899984
No 235
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.36 E-value=0.015 Score=59.45 Aligned_cols=57 Identities=23% Similarity=0.352 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----CCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----NFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.-.++.|+|.+|+|||++|.+++... .... ....++|++....++..++ .++++..+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 44699999999999999999997654 1122 1368999998887765444 33444433
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.35 E-value=0.015 Score=54.36 Aligned_cols=116 Identities=22% Similarity=0.154 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHc-----CCCCccccccchhH--
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD---LRLENIQEAIGEKI-----GLVNDTWKNRRTEQ-- 246 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l-----~~~~~~~~~~~~~~-- 246 (885)
+.|-|++..|.||||+|...+-+.. .+=-.+.++.+-.. ......++.+ ..+ +.. ..+...+..+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~-~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRG-FFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCC-CccCCCChHHHH
Confidence 5788999999999999988777762 22234555554332 3333333333 001 000 0001111111
Q ss_pred -----HHHHHHHHhccC-cEEEEEccccch-----hcccccccCCCCCCCCCcEEEEecCChh
Q 039262 247 -----KALDIFRNLKEK-KFVLLLDDIWER-----VDLSKVGIPLPGRLNNKSKVVFTTRSEE 298 (885)
Q Consensus 247 -----~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~~ 298 (885)
.....++.+... -=|+|||++-.. .+.+.+...+. ....+..+|+|.|+..
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 112233334443 449999998433 23344444444 4456788999999853
No 237
>PRK06696 uridine kinase; Validated
Probab=96.34 E-value=0.0057 Score=61.89 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 159 GLQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|++.+++|.+.+.. ++..+|+|.|.+|+||||+|+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467778888888753 467799999999999999999999887
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.33 E-value=0.018 Score=57.74 Aligned_cols=48 Identities=21% Similarity=0.337 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (885)
.-+++.|+|.+|+|||++|.+++.... .....++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 356999999999999999999888762 3356899999876 55555443
No 239
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.026 Score=61.04 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=82.1
Q ss_pred cccchHHHHHHHHHHHcc-CCCcE-EEEEcCCCCcHHHHHHHHHHhhcCCCC------------------CCCEEEEEEE
Q 039262 156 TVVGLQSQLERVWRCLVQ-EPAGI-VGLYGMGGVGKTTLMALINNKFLGSPT------------------NFDVVIWVVV 215 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv~~ 215 (885)
.++|-+....++..+..+ ++... +.++|+.|+||||+|..+++....... ..+.+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 357778888888888774 44555 999999999999999999988721100 1234555555
Q ss_pred cCccC---HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--cccccccCCCCCCCCCcEE
Q 039262 216 SKDLR---LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--DLSKVGIPLPGRLNNKSKV 290 (885)
Q Consensus 216 s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~~~~~gs~i 290 (885)
++... ..+..+++.+....... .++.-++++|+++... .-..+...+. .....+.+
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~------------------~~~~kviiidead~mt~~A~nallk~lE-ep~~~~~~ 142 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL------------------EGGYKVVIIDEADKLTEDAANALLKTLE-EPPKNTRF 142 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC------------------CCCceEEEeCcHHHHhHHHHHHHHHHhc-cCCCCeEE
Confidence 55444 34444444444432210 3566789999997542 2233333333 34566778
Q ss_pred EEecCCh-hHhhhc-cCcceEEecc
Q 039262 291 VFTTRSE-EVCGLM-EAHKKFKVEC 313 (885)
Q Consensus 291 ivTtR~~-~v~~~~-~~~~~~~l~~ 313 (885)
|++|.+. .+.... .....+++.+
T Consensus 143 il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 143 ILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred EEEcCChhhccchhhhcceeeecCC
Confidence 8777643 332222 2234566666
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.33 E-value=0.034 Score=56.54 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----CCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc-------ccccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----NFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT-------WKNRR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 243 (885)
.-.++.|+|.+|+|||++|.+++.... ..+ .=..++|++....++...+. .+++........ ....+
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~-~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQ-LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhh-cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 456999999999999999999887751 111 11568999988777765543 333333221100 01123
Q ss_pred hhHHHHHHHHHhc----cCcEEEEEcccc
Q 039262 244 TEQKALDIFRNLK----EKKFVLLLDDIW 268 (885)
Q Consensus 244 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 268 (885)
.++....+.+... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 3444444444332 244588999873
No 241
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.31 E-value=0.021 Score=58.76 Aligned_cols=58 Identities=26% Similarity=0.374 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCC----CCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSP----TNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-.+.=|+|.+|+|||.|+.+++-.. ... +.=..++|++-...+...++. +|+++.+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~ 98 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGL 98 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhcccc
Confidence 34699999999999999998887654 211 223479999999999887775 46776654
No 242
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.0054 Score=56.93 Aligned_cols=42 Identities=33% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHH
Q 039262 179 VGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (885)
|.++|.+|+|||+||+.+++.. . ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---G---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---T---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHh---h---cceEEEEecccccccccee
Confidence 6799999999999999999987 1 2344567777777776653
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.27 E-value=0.011 Score=62.33 Aligned_cols=86 Identities=17% Similarity=0.141 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---ccccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---WKNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (885)
.-+++-|+|.+|+||||||.++..... ..-..++||.....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456999999999999999999877762 234567899877665543 35555543221 1122334444444
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
...++ +..-++|+|-|-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 44443 456699999983
No 244
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.27 E-value=0.016 Score=55.85 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CC---CCC--EEEEEEEcCccCHHHHHHHHHHHcCCCCc----cccccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS--PT---NFD--VVIWVVVSKDLRLENIQEAIGEKIGLVND----TWKNRR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~---~f~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~~~~ 243 (885)
.-.+++|+|..|+|||||.+.+..+.-.+ .. .|. .+.|+ .+ .+.++.++.... .....+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LS 89 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLS 89 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCC
Confidence 45699999999999999999986431011 00 111 12232 11 455666664321 011112
Q ss_pred h-hHHHHHHHHHhccC--cEEEEEccccc---hhcccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 244 T-EQKALDIFRNLKEK--KFVLLLDDIWE---RVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 244 ~-~~~~~~l~~~l~~k--~~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
. +.....+.+.+..+ +=++++|+.-. ....+.+...+......|..||++|.+.+.... ....+.+
T Consensus 90 gGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 22233345555566 77888998733 222222222222111246678889988876542 4444444
No 245
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.24 E-value=0.011 Score=62.29 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=54.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---ccccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---WKNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (885)
.-+++-|+|++|+||||||.+++...+ ..-..++||+....++.. .+++++...+. ....+.++....+
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 456899999999999999999877762 234568899887766643 34455443221 1122334444444
Q ss_pred HHHhc-cCcEEEEEccc
Q 039262 252 FRNLK-EKKFVLLLDDI 267 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv 267 (885)
...++ +..-++|+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 35668999997
No 246
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.23 E-value=0.011 Score=71.63 Aligned_cols=46 Identities=28% Similarity=0.428 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHcc---------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ---------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..++.+.+.+.. ....++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999888742 134578999999999999999998876
No 247
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.22 E-value=0.041 Score=66.90 Aligned_cols=46 Identities=30% Similarity=0.436 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..++.+...+... ...++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999988888887531 22578999999999999999999876
No 248
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.20 E-value=0.015 Score=57.41 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=28.1
Q ss_pred HHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 165 ERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 165 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+.+..+...+.+++.|.|.+|+||||+++.+....
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344444444566899999999999999999988776
No 249
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.19 E-value=0.0074 Score=59.73 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=60.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH-HHHHHHHHHcCCCCccccccchhHHHHHHHHHh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE-NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL 255 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l 255 (885)
++|.|+|..|+||||++..+.... .......++. +.++.... .-...+..+-. ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~------vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILT-IEDPIEFVHESKRSLINQRE------VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEE-EcCCccccccCccceeeecc------cCCCccCHHHHHHHHh
Confidence 579999999999999999988776 2233334333 22221100 00000111000 0112233445567777
Q ss_pred ccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHh
Q 039262 256 KEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC 300 (885)
Q Consensus 256 ~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (885)
...+=.+++|++.+......+.... ..|-.++.|+-..++.
T Consensus 72 r~~pd~ii~gEird~e~~~~~l~~a----~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLALTAA----ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHHHHH----HcCCEEEEEecCCcHH
Confidence 7777899999997665544432221 2355577777665543
No 250
>PRK09354 recA recombinase A; Provisional
Probab=96.18 E-value=0.013 Score=62.22 Aligned_cols=86 Identities=19% Similarity=0.144 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---ccccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---WKNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (885)
.-+++-|+|.+|+||||||.++.... ...-..++||.....++.. .+++++...+. ....+.++....+
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45699999999999999999988776 2334678999988777652 45555543321 1122334444444
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
...++ +..-++|+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 44444 356689999983
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.16 E-value=0.021 Score=69.65 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=38.7
Q ss_pred CcccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..++.+.+.+... ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45899999999999888641 24578899999999999999999876
No 252
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.068 Score=61.86 Aligned_cols=174 Identities=19% Similarity=0.207 Sum_probs=99.6
Q ss_pred cccchHHH---HHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHH
Q 039262 156 TVVGLQSQ---LERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLEN 223 (885)
Q Consensus 156 ~~vGr~~~---~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (885)
++.|-|+. +++++++|.+. -++=|.++|++|+|||-||++++... . +-|+++|..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-g-------VPF~svSGS----- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-G-------VPFFSVSGS----- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-C-------CceeeechH-----
Confidence 46787765 45556666542 34568999999999999999999986 2 334555542
Q ss_pred HHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh-----------------cccccccCCCCCCC
Q 039262 224 IQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV-----------------DLSKVGIPLPGRLN 285 (885)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~~~~ 285 (885)
+..+.+... . ...+..+...- .+.+.++.+|+++... .+.++..-+.+...
T Consensus 379 ---EFvE~~~g~-------~-asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 379 ---EFVEMFVGV-------G-ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred ---HHHHHhccc-------c-hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 122222111 0 12222333322 3467888888875321 12222222221111
Q ss_pred C-CcEEEEecCChhHhhh-----ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 286 N-KSKVVFTTRSEEVCGL-----MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 286 ~-gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
. +--++-+|+..++.+. ..-+..+.++.-+.....++|.-++...... .+..++++ |+...-|.+=|.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 2 2223336666555322 1234567888888888999999988654422 34456677 999998888654
No 253
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.15 E-value=0.037 Score=55.84 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.-+++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 457999999999999999999988762 2334678887655543
No 254
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.014 Score=57.03 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=46.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.+.+|+|.|.+|+||||+|+.++..+ ...+ +.-++- +++-...-.....+......+.....+.+-....|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~---~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL---GVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh---CcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 34689999999999999999999998 2221 111221 12222222222233333332223445666677777777
Q ss_pred hccCc
Q 039262 255 LKEKK 259 (885)
Q Consensus 255 l~~k~ 259 (885)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 77876
No 255
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.11 E-value=0.014 Score=56.68 Aligned_cols=36 Identities=22% Similarity=0.483 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEE
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWV 213 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 213 (885)
...+|.+.|+.|+||||+|+.++... ...+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEE
Confidence 45699999999999999999999988 3445555555
No 256
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.11 E-value=0.0068 Score=67.59 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHHc------cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLV------QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+++|.++.+++|++.|. +...+++.++|+.|+||||||+.+.+-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 57999999999999983 3466899999999999999999999987
No 257
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.11 Score=55.38 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=45.8
Q ss_pred cEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hhhhc-cCcceEEeccCChhhHHHHHHHHhcCCccCC
Q 039262 259 KFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VCGLM-EAHKKFKVECLSHNDAWELFRQKVGGETLNC 334 (885)
Q Consensus 259 ~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~ 334 (885)
+=++|+|++... .....+...+. ....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.+.. .
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-~----- 186 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-V----- 186 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-C-----
Confidence 334556777532 22223333332 2223465666776643 43222 234678999999999998886541 1
Q ss_pred CchhHHHHHHHHHHhCCchhH
Q 039262 335 HPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 335 ~~~l~~~~~~i~~~c~GlPLa 355 (885)
... ...+..++|.|+.
T Consensus 187 ~~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEP-----EERLAFHSGAPLF 202 (325)
T ss_pred CcH-----HHHHHHhCCChhh
Confidence 111 1123568899964
No 258
>PRK06762 hypothetical protein; Provisional
Probab=96.10 E-value=0.043 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 259
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.08 E-value=0.016 Score=70.52 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=37.7
Q ss_pred CcccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|-+..++.+...+... ...++.++|+.|+|||+||+.+++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999998887531 23467899999999999999999876
No 260
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.03 E-value=0.039 Score=58.47 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC---CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS---PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
.-+++-|+|.+|+|||+++.+++-..+.. ...=..++||+....++.+++. +++++++..
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 44689999999999999998876543110 1122479999999888888775 467777654
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.097 Score=58.09 Aligned_cols=172 Identities=18% Similarity=0.223 Sum_probs=96.4
Q ss_pred ccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHH
Q 039262 157 VVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLEN 223 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (885)
+-|-++...++...+.. +...-|.++|++|+|||-||++|+|.. .-.| ++|-.+ +
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----E 580 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----E 580 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----H
Confidence 33456666666655543 234568899999999999999999997 3444 343332 1
Q ss_pred HHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------------cccccccCCCC-CCCCCcE
Q 039262 224 IQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------------DLSKVGIPLPG-RLNNKSK 289 (885)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~gs~ 289 (885)
++ ... .+.++......+.+.-..-+++|.||.++... ...++..-+.+ ....|.-
T Consensus 581 Ll----NkY-------VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 581 LL----NKY-------VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred HH----HHH-------hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceE
Confidence 11 111 11122222222333334579999999986420 11222222211 2345667
Q ss_pred EEEecCChhHhhh--c---cCcceEEeccCChhhHHHHHHHHhcCC--ccCCCchhHHHHHHHHHHhCCch
Q 039262 290 VVFTTRSEEVCGL--M---EAHKKFKVECLSHNDAWELFRQKVGGE--TLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 290 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
||-.|..+++... + .-....-++.-+.+|-.++++..+.+. ....+-++.+|++. .+|.|.-
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 7777766655322 1 123456677778899999999888632 22334456555554 3555554
No 262
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.16 Score=57.96 Aligned_cols=170 Identities=16% Similarity=0.124 Sum_probs=94.6
Q ss_pred CcccchHHHHHHHHHHHcc---------C---CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ---------E---PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
+++=|.++.+.+|.+.+.- . ..+=|.++|++|+|||-+|++|+.... .-|++|-.+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH----
Confidence 3567899999999887742 1 244688999999999999999999872 445555443
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------c----cc----ccc---cCCCCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------D----LS----KVG---IPLPGRL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------~----~~----~~~---~~l~~~~ 284 (885)
+++.. . -+.+++.......+.-..+++.|.||.+++.. | .+ ++. .-+....
T Consensus 740 ELLNM----Y-------VGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~ 808 (953)
T KOG0736|consen 740 ELLNM----Y-------VGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSS 808 (953)
T ss_pred HHHHH----H-------hcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCC
Confidence 11111 1 12233334444444445689999999987521 0 11 111 1122123
Q ss_pred CCCcEEEEecCChhHhhh-----ccCcceEEeccCChhhHHHHHHHHh-cCCccCCCchhHHHHHHHHHHhCC
Q 039262 285 NNKSKVVFTTRSEEVCGL-----MEAHKKFKVECLSHNDAWELFRQKV-GGETLNCHPDILELAETVAKECGG 351 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~-~~~~~~~~~~l~~~~~~i~~~c~G 351 (885)
..+--||-.|..++..+. ..-++-+.+++=+++++..=..+.. -.-....+-+ ..+|+++|.-
T Consensus 809 s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp~ 877 (953)
T KOG0736|consen 809 SQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCPP 877 (953)
T ss_pred CCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCCc
Confidence 445556666766655321 1224556677766666544333322 1111112223 4667777753
No 263
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.053 Score=52.97 Aligned_cols=166 Identities=19% Similarity=0.253 Sum_probs=88.7
Q ss_pred cc-chHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 157 VV-GLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 157 ~v-Gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++ |-|+++.+|.+.+.= .+.+-|.++|++|.|||-||++|+++. .+.|+.||...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsgse--- 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGSE--- 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechHH---
Confidence 44 567777777766531 256778999999999999999999886 25667777631
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHH-hccCcEEEEEccccchh----------c------ccccccCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN-LKEKKFVLLLDDIWERV----------D------LSKVGIPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~~-~~ 284 (885)
-+++-|.+. ......+.-. -..-+.+|..|.+++.. + .-++...+.+ ..
T Consensus 217 lvqk~igeg-------------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYIGEG-------------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHhhhh-------------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 111111110 0011111111 12346677777775320 0 0111111110 23
Q ss_pred CCCcEEEEecCChhHhhh-----ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHH
Q 039262 285 NNKSKVVFTTRSEEVCGL-----MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVA 346 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~ 346 (885)
.+.-+||..|..-++... ......++..+-+++.-.++++-+....+....-++..+|+++.
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ 350 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMP 350 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCC
Confidence 456788888776655332 12234567777777766777765553333223334444554443
No 264
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.99 E-value=0.027 Score=54.77 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc------------cccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT------------WKNR 242 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~------------~~~~ 242 (885)
.-.+++|+|..|.|||||++.+...... -...+++.-. +.......+...++...+. ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~----~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~L 99 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP----QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRF 99 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC----CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccC
Confidence 4568999999999999999999887521 1223333211 1111111111111110000 0111
Q ss_pred ch-hHHHHHHHHHhccCcEEEEEccccchhc---ccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 243 RT-EQKALDIFRNLKEKKFVLLLDDIWERVD---LSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 243 ~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
+. +.....+.+.+-.++=++++|+..+.-+ .+.+...+. ....+..||++|.+.+.... ....+.+
T Consensus 100 S~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 169 (178)
T cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH--MDKILFL 169 (178)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 11 2223335556667788999999753222 222222222 11235678888888776542 3444444
No 265
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.98 E-value=0.035 Score=52.88 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
++.|+|.+|+||||++..+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCcchH
Confidence 47899999999999999998887 22445678887765543
No 266
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0032 Score=37.10 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=8.2
Q ss_pred CCEeecCCCCccccchhh
Q 039262 588 LQHLDLSDTNVAVLPKEL 605 (885)
Q Consensus 588 L~~L~L~~~~i~~Lp~~l 605 (885)
|++|||++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 267
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.93 E-value=0.034 Score=54.40 Aligned_cols=46 Identities=35% Similarity=0.496 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHH----ccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCL----VQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.|...+.+++-- ..-...-|.+||..|+|||.|++++.+.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~ 109 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY 109 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH
Confidence 35899999888887643 23355679999999999999999999998
No 268
>PRK06547 hypothetical protein; Provisional
Probab=95.89 E-value=0.012 Score=56.54 Aligned_cols=35 Identities=26% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 166 RVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 166 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+...+......+|+|.|.+|+||||+|+.+....
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445556678899999999999999999998875
No 269
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.89 E-value=0.027 Score=59.50 Aligned_cols=117 Identities=21% Similarity=0.184 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 159 GLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
+|........+++.. ...+-+.++|..|+|||.||.++++... ...+. +.+++++ .++..+......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~-v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVS-STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCC-EEEEEHH------HHHHHHHHHHhc
Confidence 455555555555542 1346799999999999999999999983 33333 5555543 455555544421
Q ss_pred CCccccccchhHHHHHHHHHhccCcEEEEEccccc--hhcccc--cccCCCCCC-CCCcEEEEecCC
Q 039262 235 VNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWE--RVDLSK--VGIPLPGRL-NNKSKVVFTTRS 296 (885)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~~l~~~~-~~gs~iivTtR~ 296 (885)
.+..+ ..+.+. +-=||||||+.. ..+|.. +...+.... ..+-.+|+||--
T Consensus 206 -------~~~~~----~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -------GSVKE----KIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -------CcHHH----HHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11111 222222 345899999942 233432 322221011 234557777753
No 270
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.1 Score=59.02 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=47.6
Q ss_pred cccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
+-+|.++.+++|++++.- -+-+++..+|++|+|||.+|+.++... ...|- -++++.-.|+.+|
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf---RfSvGG~tDvAeI 480 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF---RFSVGGMTDVAEI 480 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE---EEeccccccHHhh
Confidence 459999999999998853 256799999999999999999999987 23331 2355555555444
No 271
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.88 E-value=0.038 Score=51.45 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=57.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.-.+++|+|..|.|||||++.+..... .....+|+.-. ..+.... +-..-+.....+.+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~~~-------------~~i~~~~---~lS~G~~~rv~lara 84 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIVTWGST-------------VKIGYFE---QLSGGEKMRLALAKL 84 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEEEECCe-------------EEEEEEc---cCCHHHHHHHHHHHH
Confidence 456999999999999999999988752 22344444210 0000000 001112223335556
Q ss_pred hccCcEEEEEccccc---hhcccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 255 LKEKKFVLLLDDIWE---RVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 255 l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
+..++-++++|+.-. ......+...+. .. +..||++|.+.+...
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~-~~--~~til~~th~~~~~~ 131 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALK-EY--PGTVILVSHDRYFLD 131 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHH-Hc--CCEEEEEECCHHHHH
Confidence 666778999998742 222333333333 11 246888887766543
No 272
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.19 Score=49.49 Aligned_cols=53 Identities=32% Similarity=0.519 Sum_probs=41.0
Q ss_pred cccCCCC--CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 148 VDERPTD--ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 148 ~~~~~~~--~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++++|++ +++-|-+++++++++.+.= ...+-|..+|++|.|||-+|++.+...
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 3455543 3477899999999998742 245678999999999999999987764
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.82 E-value=0.016 Score=55.40 Aligned_cols=116 Identities=18% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD--LRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
.-.+++|+|..|.|||||.+.++... ......+++.-..- .+..+.. ....+... +-..-+.....+.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~---qLS~G~~qrl~la 94 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY---QLSVGERQMVEIA 94 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE---ecCHHHHHHHHHH
Confidence 45699999999999999999998775 22344455432111 1111111 11111100 1111223333455
Q ss_pred HHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHh
Q 039262 253 RNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVC 300 (885)
Q Consensus 253 ~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (885)
+.+-.++-++++|+.-.. .....+...+......|..||++|.+....
T Consensus 95 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 666677889999997432 222222222221112366788888887643
No 274
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.77 E-value=0.05 Score=48.17 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=33.3
Q ss_pred cccchHHHHHHHHHHHc----c---CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLV----Q---EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|-.-..+.+++.+. . +..-|++.+|..|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46776655555555554 3 245599999999999999999888873
No 275
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.77 E-value=0.013 Score=54.31 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 158 VGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
||.-..++++.+.+.. .....|.|+|..|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 4666667777776654 455678999999999999999998876
No 276
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.044 Score=56.27 Aligned_cols=90 Identities=26% Similarity=0.306 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 159 GLQSQLERVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
++.+.+..+.+.... ++..-+.++|.+|+|||.||.++.++.. +..+ .+.++++ .++..++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~-sv~f~~~------~el~~~Lk~~~~~~-- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGI-SVLFITA------PDLLSKLKAAFDEG-- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEEEH------HHHHHHHHHHHhcC--
Confidence 444555555443321 3667899999999999999999999982 2233 4555543 45555655554321
Q ss_pred cccccchhHHHHHHHHHhccCcEEEEEcccc
Q 039262 238 TWKNRRTEQKALDIFRNLKEKKFVLLLDDIW 268 (885)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 268 (885)
.....+.+.+. +-=||||||+-
T Consensus 156 --------~~~~~l~~~l~-~~dlLIiDDlG 177 (254)
T COG1484 156 --------RLEEKLLRELK-KVDLLIIDDIG 177 (254)
T ss_pred --------chHHHHHHHhh-cCCEEEEeccc
Confidence 11112222222 22389999984
No 277
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.74 E-value=0.1 Score=61.58 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=88.7
Q ss_pred cccchHHHHHHHHHHH---cc---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHH
Q 039262 156 TVVGLQSQLERVWRCL---VQ---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLEN 223 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 223 (885)
++.|.+..++++.+.+ .+ .-.+-|.++|++|+|||++|+.+++.. ...| +.++.++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~------ 220 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSD------ 220 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHH------
Confidence 4567776665554433 22 113359999999999999999998886 2222 2222211
Q ss_pred HHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----------------ccccccCCCC-CCCC
Q 039262 224 IQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----------------LSKVGIPLPG-RLNN 286 (885)
Q Consensus 224 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~~ 286 (885)
+. .... ..........+...-...+.+|++|+++.... ...+...+.. ....
T Consensus 221 ~~----~~~~-------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~ 289 (644)
T PRK10733 221 FV----EMFV-------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 289 (644)
T ss_pred hH----Hhhh-------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC
Confidence 11 1110 01111222222333345688999999854210 1111111110 1233
Q ss_pred CcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc
Q 039262 287 KSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL 352 (885)
Q Consensus 287 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (885)
+.-+|.||...+.... . .-...+.+...+.++-.+++..+........+.+ ...+++.+.|.
T Consensus 290 ~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 290 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred CeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 4455567776654221 1 1245678888888888888888775433222222 34466666663
No 278
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.73 E-value=0.041 Score=55.47 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-----ccCHHHHHHHHHHHcCCCCcc-----ccccch
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-----DLRLENIQEAIGEKIGLVNDT-----WKNRRT 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~~-----~~~~~~ 244 (885)
.-.+++|+|.+|+||||+++.+..-.. -. .+.+++.-.+ .....+...++++..++..+. .+-..-
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~---pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE---PT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC---CC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 557999999999999999999988762 12 2233333111 222334456666766654321 111112
Q ss_pred hHHHHHHHHHhccCcEEEEEccccchhcc---cccccCCCC-CCCCCcEEEEecCChhHhhhccC
Q 039262 245 EQKALDIFRNLKEKKFVLLLDDIWERVDL---SKVGIPLPG-RLNNKSKVVFTTRSEEVCGLMEA 305 (885)
Q Consensus 245 ~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~~~l~~-~~~~gs~iivTtR~~~v~~~~~~ 305 (885)
+...-.+.+.|.-++-++|.|..-+.-+. .++...+.. ....|-..+..|-+-.|+..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 22233466778889999999986432111 111111110 12345668888888888776543
No 279
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.72 E-value=0.037 Score=53.87 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEc--CccCHHHHH------HHHHHHcCCCCc---cccccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVS--KDLRLENIQ------EAIGEKIGLVND---TWKNRR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s--~~~~~~~~~------~~i~~~l~~~~~---~~~~~~ 243 (885)
.-.+++|+|..|.|||||++.++.... ...+.+++.-. ...+..... -++++.++.... .....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 456999999999999999999988651 22334443211 111221211 124555554321 011112
Q ss_pred h-hHHHHHHHHHhccCcEEEEEccccch---hcccccccCCCCCCCC-CcEEEEecCChhHh
Q 039262 244 T-EQKALDIFRNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNN-KSKVVFTTRSEEVC 300 (885)
Q Consensus 244 ~-~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~-gs~iivTtR~~~v~ 300 (885)
. +...-.+.+.+...+-++++|+.-.. ...+.+...+...... |..||++|.+....
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2 22333455666778889999997432 2222232222211122 56788888876654
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.72 E-value=0.044 Score=58.58 Aligned_cols=60 Identities=20% Similarity=0.193 Sum_probs=43.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcC-C--CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLG-S--PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
.-+++-|+|.+|+|||+|+.+++-..+. . .+.-..++||+....|..+++.+ ++++++..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 4468889999999999999988644311 0 11224789999999999887654 66777654
No 281
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.72 E-value=0.28 Score=49.16 Aligned_cols=209 Identities=12% Similarity=0.156 Sum_probs=115.4
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC---CCCCCEEEEEEEcCc--------------
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS---PTNFDVVIWVVVSKD-------------- 218 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~-------------- 218 (885)
.+.++++...++.+....+..+-..++|++|.||-|.+..+.+..-.+ +-.-+...|.+.|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 367788888888887776678899999999999999887776664211 122344555543332
Q ss_pred -------cCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcE-EEEEccccch--hcccccccCCCCCCCCCc
Q 039262 219 -------LRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKF-VLLLDDIWER--VDLSKVGIPLPGRLNNKS 288 (885)
Q Consensus 219 -------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~gs 288 (885)
..-+-+.++|++..+...+- +.-..+.| ++|+-.+++- +....++.... .-...+
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi--------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTME-kYs~~~ 158 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI--------------ETQGQRPFKVVVINEADELTRDAQHALRRTME-KYSSNC 158 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch--------------hhccccceEEEEEechHhhhHHHHHHHHHHHH-HHhcCc
Confidence 11223344444443321100 00012344 4555554321 22222332222 223456
Q ss_pred EEEEecCC-hhHhhhcc-CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch-hHHHHHHHH-hc
Q 039262 289 KVVFTTRS-EEVCGLME-AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP-LALITIGRA-MS 364 (885)
Q Consensus 289 ~iivTtR~-~~v~~~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP-Lai~~~~~~-l~ 364 (885)
|+|+.-.+ ..+-.... ..-.+++...+++|....+++.+..+....+ .+++++|+++++|.- .|+-++-.. +.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 66653222 11111112 2335789999999999999998866554444 567999999999864 344333221 11
Q ss_pred CC--------CChHHHHHHHHHHhcc
Q 039262 365 CK--------RMPEEWSYAIQVLRTS 382 (885)
Q Consensus 365 ~~--------~~~~~w~~~~~~l~~~ 382 (885)
+. -..-+|+-+..+....
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 11 2345798877666543
No 282
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.013 Score=53.59 Aligned_cols=34 Identities=32% Similarity=0.354 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEE
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIW 212 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 212 (885)
.-|+|.|++|+||||+++.+.+... ...|...-+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~--~~g~kvgGf 39 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR--EKGYKVGGF 39 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH--hcCceeeeE
Confidence 4689999999999999999999873 333653333
No 283
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.69 E-value=0.087 Score=51.99 Aligned_cols=82 Identities=15% Similarity=0.059 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC---EEEEEEEcCccCHHHHHHHHHHHcC--CCCccccccchhHHHHHHH
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFD---VVIWVVVSKDLRLENIQEAIGEKIG--LVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~---~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~~~l~ 252 (885)
||+|.|.+|+||||+|+.+..... +.... ....++.......... ........ .........+.+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~--~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN--KRGIPAMEMDIILSLDDFYDDYHL-RDRKGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT--TCTTTCCCSEEEEEGGGGBHHHHH-HHHHHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC--ccCcCccceeEEEeecccccccch-hhHhhccccccCCCCccccCHHHHHHHHH
Confidence 799999999999999999999883 22332 2333333222221222 12222211 1111223455666667776
Q ss_pred HHhccCcEEE
Q 039262 253 RNLKEKKFVL 262 (885)
Q Consensus 253 ~~l~~k~~Ll 262 (885)
...+++.+-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 6666665433
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.69 E-value=0.07 Score=54.55 Aligned_cols=48 Identities=19% Similarity=0.154 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (885)
.-.++.|.|.+|+|||++|.++..... ..-..++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 457999999999999999999776641 2346788988765 34455444
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.69 E-value=0.075 Score=58.85 Aligned_cols=58 Identities=26% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 235 (885)
...+|.++|..|+||||+|..++.... ...+ .+..|++.. .....+.++.++++++.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 467999999999999999999998872 2223 344444332 122344566666766543
No 286
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.034 Score=56.66 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGS--PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
-|+|.++|++|.|||+|+++++++. .+ .+.+....-+.++.. .+....... .+.-...+..++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinsh----sLFSKWFsE--------SgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSH----SLFSKWFSE--------SGKLVAKMFQKIQE 243 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehh----HHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4789999999999999999999997 33 344444444433221 121111111 22334555566666
Q ss_pred HhccCcE--EEEEccccc
Q 039262 254 NLKEKKF--VLLLDDIWE 269 (885)
Q Consensus 254 ~l~~k~~--LlVlDdv~~ 269 (885)
.+.++.. .+.+|.|..
T Consensus 244 Lv~d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 244 LVEDRGNLVFVLIDEVES 261 (423)
T ss_pred HHhCCCcEEEEEeHHHHH
Confidence 6666543 344588843
No 287
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.65 E-value=0.028 Score=54.33 Aligned_cols=127 Identities=14% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC--ccCHHHHHHHHHHHcCCCCcc---ccc------cc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK--DLRLENIQEAIGEKIGLVNDT---WKN------RR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~---~~~------~~ 243 (885)
.-.+++|+|..|.|||||++.++.... .....+++.-.. ........ ..++..... ... .+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~~~~~~----~~i~~~~q~~~~~~~tv~~~lLS 98 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR----PTSGRVRLDGADISQWDPNELG----DHVGYLPQDDELFSGSIAENILS 98 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCCCeEEECCEEcccCCHHHHH----hheEEECCCCccccCcHHHHCcC
Confidence 456999999999999999999988752 122333332110 01111111 111110000 000 11
Q ss_pred -hhHHHHHHHHHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 244 -TEQKALDIFRNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 244 -~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
-+...-.+.+.+..++=++++|+.-.. .....+...+......|..||++|.+.+.... ..+.+.+
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 112233355556667779999997432 22222222222111236678888888766542 3444444
No 288
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.044 Score=52.86 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=63.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC--ccCHHHHHHHHHHHcCCCCc--cccc-------cc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK--DLRLENIQEAIGEKIGLVND--TWKN-------RR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~--~~~~-------~~ 243 (885)
.-.+++|+|..|.|||||.+.++.-.. ...+.+++.-.. ....... ...++.... ..-. .+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~----~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS 98 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD----PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILS 98 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC----CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhC
Confidence 556999999999999999999988752 123333332111 0011111 111111000 0000 11
Q ss_pred -hhHHHHHHHHHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 244 -TEQKALDIFRNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 244 -~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
-+...-.+.+.+..++=++++|+.... .....+...+. ....+..||++|.+.+.... ..+.+.+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 112223355566677889999997432 22222222222 11234678888888766543 3444444
No 289
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.64 E-value=0.034 Score=53.74 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc---cccc--------cc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND---TWKN--------RR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~~~~--------~~ 243 (885)
.-.+++|+|..|.|||||++.++.... .....+++.-....... ..+...++...+ -... .+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS 97 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK----PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLS 97 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcC
Confidence 456899999999999999999988652 22344444211100000 111111111000 0000 11
Q ss_pred -hhHHHHHHHHHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 244 -TEQKALDIFRNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 244 -~~~~~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
-+...-.+.+.+..++=++++|+.-.. .....+...+......|..||++|.+.....
T Consensus 98 ~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 98 GGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 112233456667778889999997432 2222222222111123677888888876544
No 290
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.63 E-value=0.061 Score=58.44 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++.... ..++ ..-+++++...+...-.. +.....+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~-e~~le~I~~~ 153 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLA-ETNLEDILAS 153 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEc-cCcHHHHHHH
Confidence 346999999999999999999988762 22346788876543 3333 222445554322111000 1112223333
Q ss_pred hc-cCcEEEEEccc
Q 039262 255 LK-EKKFVLLLDDI 267 (885)
Q Consensus 255 l~-~k~~LlVlDdv 267 (885)
+. .+.-++|+|.+
T Consensus 154 i~~~~~~lVVIDSI 167 (372)
T cd01121 154 IEELKPDLVIIDSI 167 (372)
T ss_pred HHhcCCcEEEEcch
Confidence 32 35668888887
No 291
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.029 Score=60.96 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=36.1
Q ss_pred cccchHH---HHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQS---QLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~---~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++-|-|+ ++++|+++|.+. =.+-|.++|++|.|||-||++++...
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 4567764 677888888762 23568999999999999999999886
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.59 E-value=0.032 Score=53.75 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.-.+++|+|..|.|||||++.+..-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345699999999999999999998765
No 293
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.57 E-value=0.073 Score=50.28 Aligned_cols=125 Identities=23% Similarity=0.227 Sum_probs=70.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE---------------------EcCcc--------------
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV---------------------VSKDL-------------- 219 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---------------------~s~~~-------------- 219 (885)
.-.++.++|++|.||||+.+.+|...... .+.+|+. |-+++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt----~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT----RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC----CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 45689999999999999999999986322 2234432 11111
Q ss_pred -------CHHHHHH---HHHHHcCCCCcc----ccccchhHHHHHHHHHhccCcEEEEEccc----cchhcccccccCCC
Q 039262 220 -------RLENIQE---AIGEKIGLVNDT----WKNRRTEQKALDIFRNLKEKKFVLLLDDI----WERVDLSKVGIPLP 281 (885)
Q Consensus 220 -------~~~~~~~---~i~~~l~~~~~~----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~~~l~ 281 (885)
...++.+ +.++..++.... ..-+.-++....+.+.+-+++-+++=|.- +....|+-+. .|.
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~-lfe 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMR-LFE 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHH-HHH
Confidence 1122222 223333332110 01112233344566777788889998864 3333444332 222
Q ss_pred CCCCCCcEEEEecCChhHhhhcc
Q 039262 282 GRLNNKSKVVFTTRSEEVCGLME 304 (885)
Q Consensus 282 ~~~~~gs~iivTtR~~~v~~~~~ 304 (885)
.-+..|..|+++|-+..+...+.
T Consensus 182 einr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 182 EINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHhhcCcEEEEEeccHHHHHhcc
Confidence 13467999999999998876653
No 294
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.57 E-value=0.036 Score=50.80 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCC
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVN 236 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 236 (885)
+|.|-|.+|+||||+|+.++++. .- .. | +.-.++++|++..+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl----~~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GL----KL---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CC----ce---e------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999997 11 11 1 23468899999988764
No 295
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.57 E-value=0.18 Score=53.06 Aligned_cols=87 Identities=18% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++-|+|..|+||||||..+.... +..-..++||.....++. ..+++++.+.+.. .....++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 45699999999999999999988876 233467999998877664 3445555543321 122334444444
Q ss_pred HHHhcc-CcEEEEEccccc
Q 039262 252 FRNLKE-KKFVLLLDDIWE 269 (885)
Q Consensus 252 ~~~l~~-k~~LlVlDdv~~ 269 (885)
.+.++. .--++|+|-|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 555544 344888998843
No 296
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.56 E-value=0.023 Score=67.44 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHcc---------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ---------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|-++.++.|.+.+.. .....+.++|+.|+|||++|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999988888762 124578999999999999999998886
No 297
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.56 E-value=0.009 Score=57.19 Aligned_cols=83 Identities=12% Similarity=0.187 Sum_probs=44.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccc-hhHHHHHHHHHh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRR-TEQKALDIFRNL 255 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~~l~~~l 255 (885)
.++.|.|.+|+||||+|..+.... . . .++++.-....+ .+..+.|..........|.... ...+...+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~-~--~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS-G--L---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc-C--C---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 368999999999999999998775 1 1 134444444333 3444444333222122222211 112333343333
Q ss_pred ccCcEEEEEccc
Q 039262 256 KEKKFVLLLDDI 267 (885)
Q Consensus 256 ~~k~~LlVlDdv 267 (885)
.+ .-++++|.+
T Consensus 75 ~~-~~~VlID~L 85 (170)
T PRK05800 75 AP-GRCVLVDCL 85 (170)
T ss_pred CC-CCEEEehhH
Confidence 33 337888987
No 298
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.057 Score=58.21 Aligned_cols=89 Identities=21% Similarity=0.303 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..+++.++|+.|+||||++.++..... .......+..++... .....+-++...+.++..... ..+..+.... ..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~-l~ 211 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLA-LA 211 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHH-HH
Confidence 356999999999999999999988751 111223555565332 223445566666666654321 1122222222 23
Q ss_pred HhccCcEEEEEcccc
Q 039262 254 NLKEKKFVLLLDDIW 268 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~ 268 (885)
.+.++ =++++|..-
T Consensus 212 ~l~~~-DlVLIDTaG 225 (374)
T PRK14722 212 ELRNK-HMVLIDTIG 225 (374)
T ss_pred HhcCC-CEEEEcCCC
Confidence 34454 456689873
No 299
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.54 E-value=0.058 Score=53.47 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE----------------------EcCcc-------------
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV----------------------VSKDL------------- 219 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~----------------------~s~~~------------- 219 (885)
.-.+|+|+|++|+|||||...+..-... -...+++. +-|.+
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~p----t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~ 105 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKP----TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVE 105 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC----CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHH
Confidence 4569999999999999999888764311 11222221 11111
Q ss_pred -----------CHHHHHHHHHHHcCCCCcc-----ccccchhHHHHHHHHHhccCcEEEEEccccc---hhcccccccCC
Q 039262 220 -----------RLENIQEAIGEKIGLVNDT-----WKNRRTEQKALDIFRNLKEKKFVLLLDDIWE---RVDLSKVGIPL 280 (885)
Q Consensus 220 -----------~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l 280 (885)
...+....+++.+++.... .+-..-++....+.+.|-..+-+|+-|+--. ...-+.+...+
T Consensus 106 lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 106 LPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred hHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 1123344555565554211 1111223334456777888888999997521 11111111112
Q ss_pred CC-CCCCCcEEEEecCChhHhhhcc
Q 039262 281 PG-RLNNKSKVVFTTRSEEVCGLME 304 (885)
Q Consensus 281 ~~-~~~~gs~iivTtR~~~v~~~~~ 304 (885)
.. ....|..||+.|-++.+|..++
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 10 2245788999999999998643
No 300
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.53 E-value=0.07 Score=56.77 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=41.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcC---CCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLG---SPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
...++.|+|.+|+|||||+..++..... ....-..++|++....+...+ +..+++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 4579999999999999999988764310 011223679999888777776 44556666543
No 301
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.51 E-value=0.042 Score=54.88 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.+....
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998864
No 302
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.51 E-value=0.016 Score=57.44 Aligned_cols=86 Identities=27% Similarity=0.280 Sum_probs=45.6
Q ss_pred CCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCCCc----cccc-------hhhhccCCCcEEecCCccccc
Q 039262 560 CMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDTNV----AVLP-------KELNALVNLKCLNLENAWMLT 623 (885)
Q Consensus 560 ~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i----~~Lp-------~~l~~L~~L~~L~l~~~~~l~ 623 (885)
.|..+..++|||| .|.. +...|.+-.+|+.-+++.-.. .++| +.+-+++.|+..+|+.|-.-.
T Consensus 28 ~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 28 MMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3556666666666 4432 444455556666666654211 2222 233455666666666664444
Q ss_pred cccc---hhhcCCCCCcEEEeecccc
Q 039262 624 VIPR---RLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 624 ~lp~---~~i~~l~~L~~L~l~~~~~ 646 (885)
..|+ +.|++-+.|.||.+.+|..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCC
Confidence 4443 2345556666666666554
No 303
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.50 E-value=0.056 Score=51.77 Aligned_cols=125 Identities=16% Similarity=0.197 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCC--C---CEEEEEEEcCccCH--HHHHHHHHHHcCCCCccccccchhHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTN--F---DVVIWVVVSKDLRL--ENIQEAIGEKIGLVNDTWKNRRTEQK 247 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~--f---~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~ 247 (885)
.-.+++|+|..|.|||||++.+........+. + ..+.++ .+.... ..+...+.-. ... .-..-+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~--~LS~G~~~ 98 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDD--VLSGGEQQ 98 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCC--CCCHHHHH
Confidence 45699999999999999999998875221111 1 112222 222211 1223332210 110 11122333
Q ss_pred HHHHHHHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 248 ALDIFRNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 248 ~~~l~~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
.-.+.+.+..++=++++|+.-.. .....+...+. .. +..||++|.+...... .++.+.+
T Consensus 99 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~--~~tiiivsh~~~~~~~--~d~i~~l 160 (166)
T cd03223 99 RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK-EL--GITVISVGHRPSLWKF--HDRVLDL 160 (166)
T ss_pred HHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHH-Hh--CCEEEEEeCChhHHhh--CCEEEEE
Confidence 34456666677788899986432 22222323332 11 3568888877765432 3344444
No 304
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.033 Score=62.69 Aligned_cols=72 Identities=26% Similarity=0.236 Sum_probs=48.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL--RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..-|.|.|..|+|||+||+++++... ++..-.+.+|+++.-. ..+.+++.+-.- +-+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-------------------fse 489 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-------------------FSE 489 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH-------------------HHH
Confidence 45789999999999999999999983 5566667777765421 222222222211 223
Q ss_pred HhccCcEEEEEcccc
Q 039262 254 NLKEKKFVLLLDDIW 268 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~ 268 (885)
.+...+-++||||++
T Consensus 490 ~~~~~PSiIvLDdld 504 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLD 504 (952)
T ss_pred HHhhCCcEEEEcchh
Confidence 344578899999985
No 305
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.47 E-value=0.087 Score=53.79 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc----------------
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---------------- 238 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------------- 238 (885)
.-+++.|+|.+|+|||++|.++..... ..=..++|++..+. ..++.+.+ ++++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~---~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL---KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH---hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 457999999999999999999866541 23457889988654 34555543 334322111
Q ss_pred --ccccchhHHHHHHHHHhcc-CcEEEEEcccc
Q 039262 239 --WKNRRTEQKALDIFRNLKE-KKFVLLLDDIW 268 (885)
Q Consensus 239 --~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 268 (885)
......++....+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234455556666654 55589999874
No 306
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.46 E-value=0.11 Score=55.75 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----CCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----NFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
...++-|+|.+|+|||+++.+++.... ... .=..++||+....++..++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 456899999999999999999887642 111 11479999998888877664 44455543
No 307
>PRK10867 signal recognition particle protein; Provisional
Probab=95.46 E-value=0.099 Score=57.77 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999988887766
No 308
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.45 E-value=0.05 Score=52.60 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998876
No 309
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.45 E-value=0.019 Score=58.33 Aligned_cols=27 Identities=33% Similarity=0.561 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|+|.|..|.|||||++.+....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999887
No 310
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.42 E-value=0.058 Score=55.72 Aligned_cols=35 Identities=23% Similarity=0.237 Sum_probs=29.4
Q ss_pred HHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 166 RVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 166 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..+++.+.+..+|.|.|.+|.|||||+..+.+..
T Consensus 94 ~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 94 RNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445555688999999999999999999999986
No 311
>PTZ00301 uridine kinase; Provisional
Probab=95.41 E-value=0.025 Score=56.12 Aligned_cols=25 Identities=28% Similarity=0.586 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4689999999999999999998776
No 312
>PHA00729 NTP-binding motif containing protein
Probab=95.37 E-value=0.021 Score=56.53 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.6
Q ss_pred HHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 166 RVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 166 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566689999999999999999999875
No 313
>PRK07667 uridine kinase; Provisional
Probab=95.35 E-value=0.023 Score=55.96 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred HHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 164 LERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 164 ~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+.|.+.+.. ....+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666654 345799999999999999999999887
No 314
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.35 E-value=0.027 Score=62.17 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=38.5
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++||++.++.+...+..+ .-|.|.|.+|+|||++|+.+....
T Consensus 20 ~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHh
Confidence 35899999999998888763 468899999999999999999876
No 315
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.33 E-value=0.014 Score=53.17 Aligned_cols=22 Identities=32% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|+|.|..|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998884
No 316
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.036 Score=53.85 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.++...
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998764
No 317
>PRK04328 hypothetical protein; Provisional
Probab=95.27 E-value=0.084 Score=54.30 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL 219 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (885)
.-.++.|.|.+|+|||+||.++.... ...-..++|++....+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~---~~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhcCCcEEEEEeeCCH
Confidence 45799999999999999999977664 1234568888876643
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.26 E-value=0.0089 Score=35.17 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=15.6
Q ss_pred cccEEEecCCCccccCchhHhc
Q 039262 563 RLKVLNLSGAKQLFYFPLVISK 584 (885)
Q Consensus 563 ~Lr~L~Ls~~~~i~~lp~~i~~ 584 (885)
+|++|||++| .++.+|+++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4778888888 77788776654
No 319
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.035 Score=52.72 Aligned_cols=117 Identities=23% Similarity=0.247 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc--CHHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL--RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
.-.+++|+|..|.|||||++.+.... ......+++.-.... ..... ...+.... +-..-+.....+.
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~---qlS~G~~~r~~l~ 92 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEEL----RRRIGYVP---QLSGGQRQRVALA 92 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHH----HhceEEEe---eCCHHHHHHHHHH
Confidence 34699999999999999999998875 223445554322111 11111 11111100 0111122333455
Q ss_pred HHhccCcEEEEEccccch---hcccccccCCCCCCCCCcEEEEecCChhHhhh
Q 039262 253 RNLKEKKFVLLLDDIWER---VDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL 302 (885)
Q Consensus 253 ~~l~~k~~LlVlDdv~~~---~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (885)
..+...+-++++|+.-.. .....+...+......+..+|++|.+......
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 566667889999997432 22222222221011225678888887766544
No 320
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.15 Score=54.67 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC--HHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR--LENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
+.++|+++|.+|+||||++..++.... ...+ .+..++.. .+. ..+-++..++.++.+.. ...+...+...+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~--v~~d~~~L~~aL~ 313 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVI--AVRDEAAMTRALT 313 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEE--ecCCHHHHHHHHH
Confidence 457999999999999999999988762 2222 34455443 222 22333444444543321 1233444444333
Q ss_pred HHhcc-CcEEEEEccc
Q 039262 253 RNLKE-KKFVLLLDDI 267 (885)
Q Consensus 253 ~~l~~-k~~LlVlDdv 267 (885)
..-.. +.=++++|-.
T Consensus 314 ~lk~~~~~DvVLIDTa 329 (436)
T PRK11889 314 YFKEEARVDYILIDTA 329 (436)
T ss_pred HHHhccCCCEEEEeCc
Confidence 32221 2236777776
No 321
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.26 E-value=0.049 Score=49.57 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCccccch-hhhccCCC
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVLPK-ELNALVNL 611 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L 611 (885)
..+++|+.+.+.. .+..++...|.++..|+.+.+.++ +..++. .+..+.+|+++.+.. .+..++. .+..+.+|
T Consensus 9 ~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred hCCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 4445555555543 244455555555555555555443 333322 234444555555543 3434442 23445555
Q ss_pred cEEecCCccccccccchhhcCCCCCcEEEee
Q 039262 612 KCLNLENAWMLTVIPRRLISSFSSLHVLRMF 642 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (885)
+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55555432 344444444444 55555443
No 322
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.25 E-value=0.92 Score=48.98 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=38.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc--cCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD--LRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~ 235 (885)
...||-.+|.-|.||||.|-.+++.+. . ....+-+...+. +..-+-++.++++.+.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lk---k-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLK---K-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHH---H-cCCceEEEecccCChHHHHHHHHHHHHcCCc
Confidence 457999999999999999999999883 2 222223333333 33445577778887654
No 323
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.24 E-value=0.04 Score=62.30 Aligned_cols=72 Identities=26% Similarity=0.371 Sum_probs=52.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.-++..++|++|+||||||..+++.. .| .++=|.+|+.-+...+-..|...+.... .
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s-----------------~ 381 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHS-----------------V 381 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhcc-----------------c
Confidence 35699999999999999999998875 23 3677888888777777666665553211 1
Q ss_pred h--ccCcEEEEEccccc
Q 039262 255 L--KEKKFVLLLDDIWE 269 (885)
Q Consensus 255 l--~~k~~LlVlDdv~~ 269 (885)
+ .+++.-||+|.++-
T Consensus 382 l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDG 398 (877)
T ss_pred cccCCCcceEEEecccC
Confidence 2 15677889998864
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.24 E-value=0.075 Score=55.72 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..++++|+|.+|+||||++..++.... ....-..+..|+..... .....+....+.++.... ...+..+....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~--~~~~~~~l~~~l~- 268 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVK--VARDPKELRKALD- 268 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCcee--ccCCHHHHHHHHH-
Confidence 456999999999999999999888762 11111345556543311 122333334444443321 1122333333333
Q ss_pred HhccCcEEEEEcc
Q 039262 254 NLKEKKFVLLLDD 266 (885)
Q Consensus 254 ~l~~k~~LlVlDd 266 (885)
.+.+ .=++++|.
T Consensus 269 ~~~~-~d~vliDt 280 (282)
T TIGR03499 269 RLRD-KDLILIDT 280 (282)
T ss_pred HccC-CCEEEEeC
Confidence 3333 34677775
No 325
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.24 E-value=0.86 Score=47.94 Aligned_cols=167 Identities=14% Similarity=0.059 Sum_probs=92.5
Q ss_pred HHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhc-------CCCCCCCEEEEEEE-cCccCHHHHHHHHHHHcCC
Q 039262 164 LERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFL-------GSPTNFDVVIWVVV-SKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 164 ~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~-------~~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~~ 234 (885)
++.+.+.+..+.. ++..++|..|.||+++|..+.+..- ....|-+...++.. +....++++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 4455556655544 4666999999999999999988751 11112223333322 122222222 233333322
Q ss_pred CCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCC-hhHhh-hccCcceEE
Q 039262 235 VNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRS-EEVCG-LMEAHKKFK 310 (885)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~~v~~-~~~~~~~~~ 310 (885)
.. .-.+.+=++|+||+... .....+...+. ....++.+|++|.+ ..+.. .......++
T Consensus 84 ~~-----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~ 145 (299)
T PRK07132 84 SS-----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFN 145 (299)
T ss_pred CC-----------------cccCCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEE
Confidence 11 00145668888888543 22344444454 44566777765544 44433 234467889
Q ss_pred eccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 311 VECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 311 l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
+.++++++..+.+... + . + ++.+..++...+|.--|+..
T Consensus 146 f~~l~~~~l~~~l~~~-~-~----~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 146 VKEPDQQKILAKLLSK-N-K----E---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCCHHHHHHHHHHc-C-C----C---hhHHHHHHHHcCCHHHHHHH
Confidence 9999999998877654 1 1 1 23366666677763345544
No 326
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.12 Score=57.67 Aligned_cols=88 Identities=20% Similarity=0.311 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..++|+|+|.+|+||||++..+..... .......+..++... .....+.++.....++.... ...+.......+ +
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL-~ 424 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLL-E 424 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHH-H
Confidence 457999999999999999999887752 122223455555422 11122223333333433221 111222333333 3
Q ss_pred HhccCcEEEEEccc
Q 039262 254 NLKEKKFVLLLDDI 267 (885)
Q Consensus 254 ~l~~k~~LlVlDdv 267 (885)
.+.+ .=+|++|..
T Consensus 425 ~l~~-~DLVLIDTa 437 (559)
T PRK12727 425 RLRD-YKLVLIDTA 437 (559)
T ss_pred Hhcc-CCEEEecCC
Confidence 3333 447888886
No 327
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.23 E-value=0.016 Score=45.98 Aligned_cols=23 Identities=26% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998884
No 328
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.23 E-value=0.044 Score=57.87 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.....++|||++|+|||.+|+++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999997
No 329
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.23 E-value=0.043 Score=59.31 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHHccC--------------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQE--------------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|.++.+..+.-.+... ..+.|.++|++|+|||++|+.++...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46899998888886655431 23679999999999999999999987
No 330
>PRK08233 hypothetical protein; Provisional
Probab=95.21 E-value=0.017 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|.+|+||||+|+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999886
No 331
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.20 E-value=0.06 Score=58.90 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC-HHHHHHHHHHHcCCCCcc----ccccchh----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR-LENIQEAIGEKIGLVNDT----WKNRRTE---- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~~----~~~~~~~---- 245 (885)
.-..++|+|..|+|||||++.+.+.. ..+.++.+-+++... +.++...++..-+....- ..+.+..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 45689999999999999999998654 225666676766543 445555554432221100 0111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 246 --QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 246 --~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1122233444 5799999999983
No 332
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.16 E-value=0.079 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...++.++|.+|+||||+|..++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998888775
No 333
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.13 E-value=0.29 Score=56.22 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+.|.+...+.+.+.+.- ...+.+.++|++|+|||.||+++++.. ...|-.+.+ .
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~-----~---- 310 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKG-----S---- 310 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeC-----H----
Confidence 355666666655554421 245589999999999999999999975 344433321 1
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc-------------ccccccCCCC-CCCCCc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD-------------LSKVGIPLPG-RLNNKS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~gs 288 (885)
++.... -..+.......+....+..+..|.+|+++.... ..++...+.. ....+.
T Consensus 311 ----~l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 311 ----ELLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred ----HHhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 111111 122223333334444457889999999854211 1112222210 122333
Q ss_pred EEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCC
Q 039262 289 KVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGE 330 (885)
Q Consensus 289 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 330 (885)
.||-||-....... + .-...+.+.+-+.++..+.|..+....
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 44555554433221 1 224578889999999999999988643
No 334
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.11 E-value=0.046 Score=60.93 Aligned_cols=91 Identities=21% Similarity=0.230 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEE-EEEEcCcc-CHHHHHHHHHHHcCC-CCcc--ccccchhHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVI-WVVVSKDL-RLENIQEAIGEKIGL-VNDT--WKNRRTEQKAL 249 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~-wv~~s~~~-~~~~~~~~i~~~l~~-~~~~--~~~~~~~~~~~ 249 (885)
.-.-..|+|.+|+|||||++.+++... ..+-++.+ .+-|.+.. .+.++.+.+-..+-. +.+. .........+.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~--~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT--TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh--hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 345789999999999999999999762 23444443 44455543 333333333111100 0000 00111122223
Q ss_pred HHHHHh--ccCcEEEEEccc
Q 039262 250 DIFRNL--KEKKFVLLLDDI 267 (885)
Q Consensus 250 ~l~~~l--~~k~~LlVlDdv 267 (885)
.+.+++ .++.+||++|++
T Consensus 493 ~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCc
Confidence 333444 578999999998
No 335
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.16 Score=51.62 Aligned_cols=41 Identities=29% Similarity=0.297 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD 218 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 218 (885)
.-.++.|.|.+|+||||+|.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL---RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEEccCC
Confidence 457999999999999999998776542 22357888887443
No 336
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.09 E-value=0.055 Score=53.69 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
.-.+++|+|..|.|||||.+.+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999886
No 337
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.06 E-value=0.032 Score=57.95 Aligned_cols=88 Identities=25% Similarity=0.355 Sum_probs=48.8
Q ss_pred HHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccch
Q 039262 165 ERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRT 244 (885)
Q Consensus 165 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 244 (885)
..+++.+... .+-|.++|..|+|||++++...... . ...| .+.-++.+...+...+++.+-..+..... .
T Consensus 23 ~~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l-~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~----~-- 92 (272)
T PF12775_consen 23 SYLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSL-D-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG----R-- 92 (272)
T ss_dssp HHHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCS-T-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT----E--
T ss_pred HHHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccC-C-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC----C--
Confidence 4456655554 4567899999999999999988765 2 1222 23445555554444443322222211000 0
Q ss_pred hHHHHHHHHHhccCcEEEEEcccc
Q 039262 245 EQKALDIFRNLKEKKFVLLLDDIW 268 (885)
Q Consensus 245 ~~~~~~l~~~l~~k~~LlVlDdv~ 268 (885)
...--.+|+.++.+||+.
T Consensus 93 ------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCcEEEEEecccC
Confidence 000013688899999984
No 338
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.05 E-value=0.02 Score=57.34 Aligned_cols=26 Identities=35% Similarity=0.526 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..+|+|.|.+|+||||||+.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999999886
No 339
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.03 E-value=0.12 Score=49.15 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=61.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE---cCccCHHHHHHHHHH---HcCCCCccccccch-----
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV---SKDLRLENIQEAIGE---KIGLVNDTWKNRRT----- 244 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~~~~~~~~~~i~~---~l~~~~~~~~~~~~----- 244 (885)
...|-|++..|.||||.|..++-+.. ...+ .+..+.+ .........+....- +.+... .+...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~-~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGF-TWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCC-eecCCCcHHHHH
Confidence 46888999999999999988877762 2233 3333332 222333334333200 001100 0111111
Q ss_pred --hHHHHHHHHHhccCcE-EEEEccccch-----hcccccccCCCCCCCCCcEEEEecCCh
Q 039262 245 --EQKALDIFRNLKEKKF-VLLLDDIWER-----VDLSKVGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 245 --~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (885)
.+.....++.+...+| |+|||.+-.. .+.+++...+. ....+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCC
Confidence 1122233344444444 9999998433 22334444444 455678999999986
No 340
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.035 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 341
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.01 E-value=0.09 Score=51.87 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC-------CEEEEEEEcCc
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNF-------DVVIWVVVSKD 218 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 218 (885)
-.++.|.|.+|+||||++..+..........| ..++|+.....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 35899999999999999999888774322221 36788876665
No 342
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.99 E-value=0.13 Score=52.73 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcC-CCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch-h--
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLG-SPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT-E-- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~-~-- 245 (885)
.-.-++|.|-.|+|||+|+..+.+...- .+++-+.++++-+++.. ...++..++.+.-...... ..+.+. .
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4457899999999999999998877510 12335788899888765 4556666665542221100 011111 1
Q ss_pred ---HHHHHHHHHhc---cCcEEEEEccccc
Q 039262 246 ---QKALDIFRNLK---EKKFVLLLDDIWE 269 (885)
Q Consensus 246 ---~~~~~l~~~l~---~k~~LlVlDdv~~ 269 (885)
..+..+.+++. ++.+|+++||+-.
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 11223444442 6899999999843
No 343
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.98 E-value=0.022 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999999886
No 344
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.96 E-value=0.068 Score=48.61 Aligned_cols=112 Identities=17% Similarity=0.306 Sum_probs=45.7
Q ss_pred ceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEee
Q 039262 516 KVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLD 592 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~ 592 (885)
+++.+.+.. .+..+.. +..+++|+.+.+.++ +..++...|.+++.|+.+.+.++ +..++. .+..+.+|+.++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 455555542 3333322 455666676666553 55566666666666777777542 333332 344466677777
Q ss_pred cCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCC
Q 039262 593 LSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSL 636 (885)
Q Consensus 593 L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L 636 (885)
+..+ +..++. .+.+. +|+.+.+.. .+..++.+.+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 6554 555553 34444 666666654 2455555555555444
No 345
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.95 E-value=0.18 Score=54.10 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcC--CC-CCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLG--SP-TNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
...++-|+|.+|+|||+++..++-.... .. ..-..++||+....+..+++ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 4568899999999999999887755311 01 11237999999999888776 4567776653
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.92 E-value=0.15 Score=52.73 Aligned_cols=128 Identities=14% Similarity=0.074 Sum_probs=67.5
Q ss_pred HHHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC-CCcc-c--
Q 039262 165 ERVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL-VNDT-W-- 239 (885)
Q Consensus 165 ~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~-~-- 239 (885)
+.++..+.+ ....-++|+|..|.|||||.+.+..... .....+++.-.+ ....+...+++..... .... .
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEE-eecchhHHHHHHHhccccccccccc
Confidence 344444433 3457899999999999999999998762 223333332100 0000111233322221 1100 0
Q ss_pred -cccchhHHHHHHHHHhc-cCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhh
Q 039262 240 -KNRRTEQKALDIFRNLK-EKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 240 -~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
+..+.......+...+. ..+=++++|.+-....+..+...+ ..|..||+||-+..+..
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----HAGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----hCCCEEEEEechhHHHH
Confidence 00111111223333333 578899999987665555554433 24778999998766643
No 347
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.91 E-value=0.11 Score=50.11 Aligned_cols=118 Identities=23% Similarity=0.181 Sum_probs=63.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc---cCHHHHHHHHH--HH--cCCCCccccccchh--
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD---LRLENIQEAIG--EK--IGLVNDTWKNRRTE-- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~--~~--l~~~~~~~~~~~~~-- 245 (885)
....|-|+|..|-||||.|..+.-+.. .+=-.+..+.+-.. ......+..+- .- .+... .+...+.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~-~~~~~~~~e~ 96 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGF-TWETQDRERD 96 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCC-cccCCCcHHH
Confidence 457899999999999999988877752 22234444544332 23333333310 00 01100 01111111
Q ss_pred -----HHHHHHHHHhccC-cEEEEEccccch-----hcccccccCCCCCCCCCcEEEEecCCh
Q 039262 246 -----QKALDIFRNLKEK-KFVLLLDDIWER-----VDLSKVGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 246 -----~~~~~l~~~l~~k-~~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (885)
+.....++.+... -=|+|||.+-.. .+.+++...+. ....+..||+|-|+.
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~ 158 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCC
Confidence 1122334444444 449999998433 23444444444 455678999999985
No 348
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.89 E-value=0.16 Score=52.93 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|+|.|..|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999998876655
No 349
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.87 E-value=0.097 Score=51.28 Aligned_cols=45 Identities=24% Similarity=0.194 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHH
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (885)
++.|.|.+|+|||++|.++..... ..=..++|++.... ..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999999887762 22245778876543 4444433
No 350
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0049 Score=61.14 Aligned_cols=68 Identities=26% Similarity=0.416 Sum_probs=38.9
Q ss_pred ccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCc-hhhcCCCcccEEEecCC
Q 039262 504 RLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDR-GFFQCMPRLKVLNLSGA 572 (885)
Q Consensus 504 ~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~-~~~~~l~~Lr~L~Ls~~ 572 (885)
++..+.-...++.+..|+++-|.|..+..+..|++|+.|+|..| .+.++.. ..++++++||+|-|..|
T Consensus 30 ~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 30 GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhccC
Confidence 33444334445566666666666666666666666666666666 4444422 23456666666666655
No 351
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.83 E-value=0.052 Score=63.01 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
+.++|.++.++.|...+... +.+.++|.+|+||||+|+.+.+... ..+++..+|... ...+...+++.++.+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcCH
Confidence 46899999888888777654 4799999999999999999998862 445788888765 344667777777766653
No 352
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.14 Score=53.25 Aligned_cols=89 Identities=20% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH--HHHHHHHHHHcCCCCcc-ccccchhHH-HHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL--ENIQEAIGEKIGLVNDT-WKNRRTEQK-ALD 250 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 250 (885)
+.++|.++|.+|+||||++..++.... ..-..+.+++.. .+.. .+-+...++..+...-. ....+.... ...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~---~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK---KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 467999999999999999999988772 222355566543 2322 23334445555432110 011122222 222
Q ss_pred HHHHhccCcEEEEEccc
Q 039262 251 IFRNLKEKKFVLLLDDI 267 (885)
Q Consensus 251 l~~~l~~k~~LlVlDdv 267 (885)
+.....+..=++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33333344457788876
No 353
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.82 E-value=0.14 Score=54.68 Aligned_cols=59 Identities=20% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC---CCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS---PTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-.++-|+|.+|+||||++.+++.....- ...-..++||+....++..++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 35689999999999999999998775210 0011379999998888877654 44555544
No 354
>PRK03839 putative kinase; Provisional
Probab=94.82 E-value=0.024 Score=55.22 Aligned_cols=23 Identities=43% Similarity=0.729 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 355
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.11 Score=52.32 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.+....
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998865
No 356
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.81 E-value=0.12 Score=53.24 Aligned_cols=88 Identities=19% Similarity=0.196 Sum_probs=55.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH-cCCCCccccccch---hHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK-IGLVNDTWKNRRT---EQKALD 250 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~-l~~~~~~~~~~~~---~~~~~~ 250 (885)
.-+++=|+|+.|.||||+|.+++-.. +..-..++|++.-..++...+.. ++.. +..-. .....+. .+.+..
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~-v~~~~~~e~q~~i~~~ 133 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLL-VSQPDTGEQQLEIAEK 133 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCCCCCHHHHHH-HHHhhhccee-EecCCCHHHHHHHHHH
Confidence 45789999999999999999987776 34444899999999888776643 3333 21100 0011222 223333
Q ss_pred HHHHhccCcEEEEEccc
Q 039262 251 IFRNLKEKKFVLLLDDI 267 (885)
Q Consensus 251 l~~~l~~k~~LlVlDdv 267 (885)
+......+--|+|+|.|
T Consensus 134 ~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 134 LARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHhccCCCCEEEEecC
Confidence 44444444568999987
No 357
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.80 E-value=0.07 Score=57.75 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=50.0
Q ss_pred CCcccchHHHHHHHHHHHcc---------C-----CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEc-Cc
Q 039262 154 DATVVGLQSQLERVWRCLVQ---------E-----PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVS-KD 218 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~---------~-----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~ 218 (885)
+.+++|.++.+..+..++.. . ..+.|.++|+.|+|||++|+.+......---+++..-|...+ ..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 34689999999888877743 0 146799999999999999999998861111122332222221 12
Q ss_pred cCHHHHHHHHHHHc
Q 039262 219 LRLENIQEAIGEKI 232 (885)
Q Consensus 219 ~~~~~~~~~i~~~l 232 (885)
.+.+.+.+.+.+..
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 25556666655543
No 358
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.80 E-value=0.056 Score=48.92 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 162 SQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++..++-+.|.. ....+|.+.|.-|.||||+++.+++..
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 344444444443 245699999999999999999999987
No 359
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.79 E-value=0.03 Score=56.42 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999886
No 360
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.78 E-value=0.16 Score=50.47 Aligned_cols=88 Identities=24% Similarity=0.418 Sum_probs=53.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCCCc----cccccchhH---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKIGLVND----TWKNRRTEQ--- 246 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~~--- 246 (885)
.-.-++|.|.+|+|||+|+..+.+.. .-+.++++.+++. ..+.++.+++...-..... ...+.....
T Consensus 14 ~Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~ 88 (215)
T PF00006_consen 14 RGQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYR 88 (215)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHH
T ss_pred cCCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhh
Confidence 34679999999999999999999986 1345588888765 3455666666443111100 001111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEccc
Q 039262 247 ---KALDIFRNL--KEKKFVLLLDDI 267 (885)
Q Consensus 247 ---~~~~l~~~l--~~k~~LlVlDdv 267 (885)
....+.+++ +++.+|+++||+
T Consensus 89 ~~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 89 APYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hhccchhhhHHHhhcCCceeehhhhh
Confidence 111222222 589999999998
No 361
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.75 E-value=0.093 Score=58.17 Aligned_cols=92 Identities=23% Similarity=0.298 Sum_probs=58.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 244 (885)
.-..++|.|.+|+|||||+.++.+... +.+-+.++++-+++.. .+.++..++...-...... ..+.+.
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~--~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS--KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 446899999999999999999988872 2356788888777654 4555666665432221100 011111
Q ss_pred -hHHHHHHHHHh---ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL---KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l---~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslT 247 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccch
Confidence 12223344554 3789999999983
No 362
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.75 E-value=0.14 Score=53.03 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
.-+++.|.|.+|+|||++|.+++.... ..-..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 456999999999999999999877652 2235788888864
No 363
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.48 Score=49.79 Aligned_cols=50 Identities=28% Similarity=0.383 Sum_probs=35.3
Q ss_pred cccchHHHHHHHHHHHcc--------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC
Q 039262 156 TVVGLQSQLERVWRCLVQ--------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD 208 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~ 208 (885)
++-|-|..++.+.+...= ...+-|.++|++|.|||-||++++.+. ...|-
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fI 156 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFI 156 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcc
Confidence 345566666655554321 145678999999999999999999987 45553
No 364
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.72 E-value=0.026 Score=56.43 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|.+|+||||||+.+....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999999876
No 365
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.69 E-value=0.045 Score=55.59 Aligned_cols=88 Identities=23% Similarity=0.221 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCC-CCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc-------------cc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTN-FDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT-------------WK 240 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------------~~ 240 (885)
.-.++.|.|.+|+|||++|.++..... .. =+.++||+...+. .++.+.+. +++..... ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~---~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGL---KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhh---hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 457999999999999999998765541 22 3467888876544 44444433 34321100 00
Q ss_pred -----ccchhHHHHHHHHHhcc-CcEEEEEcccc
Q 039262 241 -----NRRTEQKALDIFRNLKE-KKFVLLLDDIW 268 (885)
Q Consensus 241 -----~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 268 (885)
..+.......+.+.++. +...+|+|.+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 23455666666666654 55789999873
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.68 E-value=0.13 Score=57.65 Aligned_cols=54 Identities=26% Similarity=0.433 Sum_probs=36.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++.. -+++++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~-ra~rlg~ 132 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKL-RAERLGL 132 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHH-HHHHcCC
Confidence 356999999999999999999988872 22346788876543 333322 2455554
No 367
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.33 Score=52.06 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
+.+++.++|+.|+||||++..++.... ..-..+.+|+..... ...+-++..++.++.... ...+..+....+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~---~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~--~~~dp~dL~~al~~ 279 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL---KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI--VATSPAELEEAVQY 279 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE--ecCCHHHHHHHHHH
Confidence 467999999999999999999887662 112356666654322 234455666666654321 12334444333332
Q ss_pred Hhc-cCcEEEEEccc
Q 039262 254 NLK-EKKFVLLLDDI 267 (885)
Q Consensus 254 ~l~-~k~~LlVlDdv 267 (885)
.-. +..=++++|-.
T Consensus 280 l~~~~~~D~VLIDTA 294 (407)
T PRK12726 280 MTYVNCVDHILIDTV 294 (407)
T ss_pred HHhcCCCCEEEEECC
Confidence 211 23457777776
No 368
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.67 E-value=0.19 Score=50.78 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=68.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----------CC---CEEEEEEE----cCcc--CH--------------
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----------NF---DVVIWVVV----SKDL--RL-------------- 221 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------~f---~~~~wv~~----s~~~--~~-------------- 221 (885)
.-.+++|+|+.|.|||||.+.+..-....++ .+ ..+.||.= ...+ ++
T Consensus 29 ~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 29 KGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 3479999999999999999999884311110 01 35666641 1111 11
Q ss_pred --------HHHHHHHHHHcCCCCc---cccccchhHH-HHHHHHHhccCcEEEEEccccc------hhcccccccCCCCC
Q 039262 222 --------ENIQEAIGEKIGLVND---TWKNRRTEQK-ALDIFRNLKEKKFVLLLDDIWE------RVDLSKVGIPLPGR 283 (885)
Q Consensus 222 --------~~~~~~i~~~l~~~~~---~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~------~~~~~~~~~~l~~~ 283 (885)
.+...+.+++.+...- .....+-.+. ...+.+.|..++=|++||.--. ....-++...+.
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~-- 186 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR-- 186 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--
Confidence 1334445555544321 1112222222 3346677888999999998532 122333333333
Q ss_pred CCCCcEEEEecCChhHh
Q 039262 284 LNNKSKVVFTTRSEEVC 300 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~ 300 (885)
..|.-|+++|-+-...
T Consensus 187 -~eg~tIl~vtHDL~~v 202 (254)
T COG1121 187 -QEGKTVLMVTHDLGLV 202 (254)
T ss_pred -HCCCEEEEEeCCcHHh
Confidence 2388899999887543
No 369
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.85 Score=51.92 Aligned_cols=173 Identities=16% Similarity=0.133 Sum_probs=89.9
Q ss_pred cccchHHHHHHHHHHHcc----------CC---CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ----------EP---AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----------~~---~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++-|..+.++-+.+.+.- .+ ..-|.++|++|+|||-||.+++... . .-+|+|-.+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-N-------LRFISVKGP---- 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-C-------eeEEEecCH----
Confidence 345666666666665542 12 2358999999999999999998876 1 234555443
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------------cccccccCCCC-CCCCCc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------------DLSKVGIPLPG-RLNNKS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~gs 288 (885)
+++...- +.+++.....+.+.-.-+++++.||..++.. ...++..-+.+ .+-.|.
T Consensus 736 ----ElL~KyI-------GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV 804 (952)
T KOG0735|consen 736 ----ELLSKYI-------GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGV 804 (952)
T ss_pred ----HHHHHHh-------cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceE
Confidence 2222221 1222333333333445699999999986521 12223222321 233455
Q ss_pred EEEEecCChhHhhh--c--cC-cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 289 KVVFTTRSEEVCGL--M--EA-HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 289 ~iivTtR~~~v~~~--~--~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
-|+-.|..++..+. + +. ++.+.=+.-++.+-.+.|...+.......+.+ .+.++.+.+|..-|
T Consensus 805 ~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vd----l~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 805 YILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVD----LECLAQKTDGFTGA 872 (952)
T ss_pred EEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccc----hHHHhhhcCCCchh
Confidence 56654433333211 1 11 12222233455666777776654332222222 46677777776543
No 370
>PTZ00035 Rad51 protein; Provisional
Probab=94.66 E-value=0.31 Score=52.34 Aligned_cols=59 Identities=25% Similarity=0.292 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC----CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS----PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
.-.++.|+|.+|+|||||+..++-.. .. ...-..++|++....++.+++ ..++++++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~ 179 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLD 179 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCC
Confidence 45689999999999999999887654 21 112246779998877777664 4456665543
No 371
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.62 E-value=0.025 Score=49.60 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999988876
No 372
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.61 E-value=0.12 Score=56.61 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.++|..|+||||++..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988776
No 373
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.60 E-value=0.2 Score=50.07 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|.|..|.|||||++.+....
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45699999999999999999998764
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=94.59 E-value=0.27 Score=52.55 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC--HHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR--LENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~ 235 (885)
+..+|.++|+.|+||||++..++.... ...+ .++.+. .+.+. ..+.++..+..++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~--~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK--KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH--HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCc
Confidence 467999999999999999988887762 2333 333443 23332 233455666666653
No 375
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.57 E-value=0.023 Score=50.45 Aligned_cols=28 Identities=39% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcCCCCCCCE
Q 039262 179 VGLYGMGGVGKTTLMALINNKFLGSPTNFDV 209 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 209 (885)
|.|+|.+|+||||+|+.++... ...|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~---~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL---GLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT---T--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHc---CCceeE
Confidence 6799999999999999999987 556643
No 376
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.57 E-value=0.031 Score=53.89 Aligned_cols=49 Identities=29% Similarity=0.432 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
..+|+|-||=|+||||||+.++++. . |. ++.=.+.+++-++..+.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l-~----~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL-G----FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh-C----Cc-eeeecccCChHHHHHHHhHHH
Confidence 4689999999999999999999998 2 22 222334444444444444443
No 377
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.57 E-value=0.097 Score=61.60 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++-|.|.+|+||||||.+++...+ ..-..++|+.....++. ..+++++...+.. ...+.++....+
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 457899999999999999988766542 22356899988877773 3677777654321 222334444445
Q ss_pred HHHhcc-CcEEEEEcccc
Q 039262 252 FRNLKE-KKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~~-k~~LlVlDdv~ 268 (885)
...+.. +.-|+|+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 554543 56689999984
No 378
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.56 E-value=0.042 Score=51.19 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV 214 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 214 (885)
..||-|.|.+|+||||||+.+.... ...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEec
Confidence 3589999999999999999999998 23334455554
No 379
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.55 E-value=0.032 Score=54.77 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.|+|.+|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998775
No 380
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.52 E-value=0.079 Score=51.67 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.+....
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998875
No 381
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.51 E-value=0.14 Score=56.68 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=56.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccchh----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRTE---- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~---- 245 (885)
.-.-++|.|.+|+|||||+.++..... .++=+.++++-+++.. .+.++.+++...-...... ..+.+..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999877762 1222567777777654 4556666666532221100 0111111
Q ss_pred --HHHHHHHHHh---ccCcEEEEEcccc
Q 039262 246 --QKALDIFRNL---KEKKFVLLLDDIW 268 (885)
Q Consensus 246 --~~~~~l~~~l---~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslT 248 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIF 248 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchH
Confidence 1223345555 6799999999983
No 382
>PRK00625 shikimate kinase; Provisional
Probab=94.49 E-value=0.031 Score=53.67 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998886
No 383
>PRK06851 hypothetical protein; Provisional
Probab=94.49 E-value=0.36 Score=51.94 Aligned_cols=57 Identities=19% Similarity=0.140 Sum_probs=42.0
Q ss_pred ccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc
Q 039262 157 VVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL 219 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (885)
..|.-...+.+. ++-.+++.|.|.+|+|||||++.++.... ...++..++-|.+++.
T Consensus 199 p~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dPd 255 (367)
T PRK06851 199 PKGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDPD 255 (367)
T ss_pred CCcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCCC
Confidence 345555555554 44567899999999999999999999873 5667777777665553
No 384
>PRK06217 hypothetical protein; Validated
Probab=94.48 E-value=0.058 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 385
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.47 E-value=0.19 Score=54.82 Aligned_cols=89 Identities=17% Similarity=0.173 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCC-CCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCCCccccccchhHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSP-TNFDVVIWVVVSKD-LRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIF 252 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~ 252 (885)
..++|.++|..|+||||.+..++....... .+-..+..+++... ......++..++.++.+.. ...+..+....+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~--~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK--AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE--eeCcHHHHHHHHH
Confidence 457999999999999999999888762111 12234555554431 1223335666666665421 2223333333333
Q ss_pred HHhccCcEEEEEccc
Q 039262 253 RNLKEKKFVLLLDDI 267 (885)
Q Consensus 253 ~~l~~k~~LlVlDdv 267 (885)
+ + .+.-++++|..
T Consensus 251 ~-~-~~~DlVLIDTa 263 (388)
T PRK12723 251 Q-S-KDFDLVLVDTI 263 (388)
T ss_pred H-h-CCCCEEEEcCC
Confidence 3 2 34558888987
No 386
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.47 E-value=0.12 Score=55.17 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.+.|++|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999887
No 387
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.46 E-value=0.12 Score=56.75 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC-CCcc-c-cccch------h
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL-VNDT-W-KNRRT------E 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~-~~~~-~-~~~~~------~ 245 (885)
.-..++|+|..|+|||||++.+.... .....++++.-.+..++.++....+..... ...- . .+.+. .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 44689999999999999999887654 122344554433344455444433332210 0000 0 11111 1
Q ss_pred HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 246 QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 246 ~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~DslT 264 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSVT 264 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchH
Confidence 1122233333 4799999999983
No 388
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.39 E-value=0.058 Score=56.74 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=41.4
Q ss_pred CcccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..|+|.++.++++++.+.. ..-+|+.++|+-|.||||||..+-+-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999864 366899999999999999999998887
No 389
>PRK04040 adenylate kinase; Provisional
Probab=94.36 E-value=0.037 Score=54.04 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999887
No 390
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.34 E-value=0.11 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|.|..|.|||||.+.+..-.
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 55699999999999999999998754
No 391
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.18 Score=55.54 Aligned_cols=89 Identities=18% Similarity=0.294 Sum_probs=52.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC-HHHHHHHHHHHcCCCCc----cccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR-LENIQEAIGEKIGLVND----TWKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~~----~~~~~~~----- 244 (885)
.-..++|+|..|+|||||++.+++.. ..+.++++-+++... +.+...+.+..-+.... ...+.+.
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 55689999999999999999998765 124556666666543 34444444433222110 0011111
Q ss_pred -hHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslT 258 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVT 258 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcH
Confidence 11122233444 4799999999983
No 392
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.31 E-value=0.23 Score=50.40 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAI 228 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (885)
...++.|.|..|+||||+|.++..... +.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL--QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999877666541 122 4567776433 445665555
No 393
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.31 E-value=0.065 Score=54.34 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHHcc----C---CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ----E---PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~---~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|-.-.++.|+..+.+ . ..-+++.+|..|+||.-.++.++++.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 356655555555555543 2 44599999999999999999999987
No 394
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.30 E-value=0.13 Score=56.65 Aligned_cols=92 Identities=25% Similarity=0.387 Sum_probs=57.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 244 (885)
.-.-++|.|.+|+|||+|+.++..... +.+-+.++++-+++.. .+.++.+++...-...... ..+.+.
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 446799999999999999999888862 2334788888887765 3455666655432221100 011111
Q ss_pred -hHHHHHHHHHhc---cCcEEEEEcccc
Q 039262 245 -EQKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
...+..+.++++ ++.+|+++||+-
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslT 242 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIF 242 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChH
Confidence 122233445543 689999999983
No 395
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.29 E-value=0.15 Score=55.56 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++.++|.+|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998754
No 396
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.27 E-value=0.13 Score=56.51 Aligned_cols=89 Identities=22% Similarity=0.326 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCcc----ccccch-h---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDT----WKNRRT-E--- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~--- 245 (885)
.-..++|+|..|+|||||++.+.... . .+..+.+.+.. ...+.++.+..+..-+..... ..+.+. .
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~---~--~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNT---D--ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC---C--CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 44689999999999999999888764 1 12233333333 334555555544432221100 011111 1
Q ss_pred --HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 246 --QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 246 --~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~DslT 240 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSVT 240 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 1122234444 4789999999983
No 397
>PRK08149 ATP synthase SpaL; Validated
Probab=94.26 E-value=0.19 Score=55.18 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCCCcc----ccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKIGLVNDT----WKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 244 (885)
.-..++|+|..|+|||||+..+++.. .-+.++...+... .++.++..+.........-. ..+.+.
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 45689999999999999999988754 2234444445443 34555656665543221100 011111
Q ss_pred -hHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslT 251 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMT 251 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchH
Confidence 11222233333 4799999999983
No 398
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.24 E-value=0.05 Score=54.05 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE-------EcCccCHHHH--HHHHHHHcCCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV-------VSKDLRLENI--QEAIGEKIGLVN 236 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-------~s~~~~~~~~--~~~i~~~l~~~~ 236 (885)
+...|.++||+|.||||..+.++.+. ..+..-..++=+. ...+.++++. +++..++.++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGP 87 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGP 87 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCC
Confidence 45588999999999999999999987 2233333333322 2233455554 567788776543
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.27 Score=54.01 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 235 (885)
...+|+++|..|+||||++..++... ......+.+..++... .....+-+...++.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 34799999999999999999887764 1112223444444332 122333345555555544
No 400
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.20 E-value=0.16 Score=52.65 Aligned_cols=105 Identities=19% Similarity=0.289 Sum_probs=57.8
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 158 VGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
.|...+..+.+..+.....++|.|.|..|.||||+++.+..... ..-..++ .+.++.... +..+ .++..
T Consensus 62 lg~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i~---~~~~~ii--tiEdp~E~~--~~~~-~q~~v--- 130 (264)
T cd01129 62 LGLKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSELN---TPEKNII--TVEDPVEYQ--IPGI-NQVQV--- 130 (264)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhhC---CCCCeEE--EECCCceec--CCCc-eEEEe---
Confidence 34444333444444444567999999999999999998877651 1111233 232221100 0000 11111
Q ss_pred cccccchhHHHHHHHHHhccCcEEEEEccccchhcccc
Q 039262 238 TWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSK 275 (885)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 275 (885)
...........++..++..+=.++++++.+......
T Consensus 131 --~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~ 166 (264)
T cd01129 131 --NEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEI 166 (264)
T ss_pred --CCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHH
Confidence 111112345566777788888999999987765443
No 401
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.20 E-value=0.23 Score=55.66 Aligned_cols=40 Identities=25% Similarity=0.400 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
.-.++.|.|.+|+|||||+.++...... .-..++|++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EE 132 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEE 132 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcC
Confidence 4569999999999999999999877621 123578887654
No 402
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.19 E-value=0.068 Score=52.19 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV 214 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 214 (885)
.++|.|+|+.|+|||||++.+.... ...|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 4789999999999999999999987 57786555554
No 403
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.33 Score=51.80 Aligned_cols=95 Identities=24% Similarity=0.380 Sum_probs=56.9
Q ss_pred HHHHHHccC--CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccc
Q 039262 166 RVWRCLVQE--PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRR 243 (885)
Q Consensus 166 ~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~ 243 (885)
++-..|..+ .-.+|.|-|-+|+|||||.-++..+.+. .. .+++|+-.+. ..++ +--+++++...+... .-
T Consensus 81 EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~--~~--~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~-l~ 152 (456)
T COG1066 81 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK--RG--KVLYVSGEES--LQQI-KLRADRLGLPTNNLY-LL 152 (456)
T ss_pred HHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHh--cC--cEEEEeCCcC--HHHH-HHHHHHhCCCccceE-Ee
Confidence 344444443 4479999999999999999999999831 22 6777765443 3232 334566665432211 11
Q ss_pred hhHHHHHHHHHhc-cCcEEEEEcccc
Q 039262 244 TEQKALDIFRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 244 ~~~~~~~l~~~l~-~k~~LlVlDdv~ 268 (885)
.+...+.+.+.+. .++-++|+|-+.
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccc
Confidence 1222333444443 578899999983
No 404
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.18 E-value=0.43 Score=51.25 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~ 235 (885)
+.++|.++|+.|+||||-...++..+ .....=..+..|+...- ....+-++.-++-++.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp 262 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVP 262 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCc
Confidence 47999999999999975444444444 11233345666765432 23334445555555554
No 405
>PRK05922 type III secretion system ATPase; Validated
Probab=94.17 E-value=0.17 Score=55.55 Aligned_cols=89 Identities=12% Similarity=0.243 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~----- 244 (885)
.-..++|+|..|+|||||.+.+.+.. ..+....+.++... .....+.+........... ..+.+.
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 45679999999999999999998764 12334444444432 3334444444333221100 011111
Q ss_pred -hHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslT 257 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLS 257 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11122334444 4799999999993
No 406
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.14 E-value=0.24 Score=54.90 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHhhcCC-----CCCCCEEEEEEEcCccCHHHHHHHHHHHcC-CCCcc----ccccc
Q 039262 175 PAGIVGLYGMGGVGKTTLM-ALINNKFLGS-----PTNFDVVIWVVVSKDLRLENIQEAIGEKIG-LVNDT----WKNRR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~----~~~~~ 243 (885)
.-.-++|.|..|+|||+|| -.+.+.. .+ .++-+.++++-+++......-+.+.+++-+ +.... ..+.+
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 3457899999999999997 5566653 11 134467889999887654333444444433 21100 01111
Q ss_pred hh-H-----HHHHHHHHh--ccCcEEEEEccccc
Q 039262 244 TE-Q-----KALDIFRNL--KEKKFVLLLDDIWE 269 (885)
Q Consensus 244 ~~-~-----~~~~l~~~l--~~k~~LlVlDdv~~ 269 (885)
.. + .+..+.+++ +++.+|+|+||+-.
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 0 112233333 47899999999843
No 407
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.11 E-value=0.06 Score=53.12 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|.+|+|||||++.+..-.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 45699999999999999999998754
No 408
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.10 E-value=0.29 Score=54.39 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.+++.++|++|+||||++..++... .....-..+..|+..... .....++...+.++.... ...+..+....+.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~--~~~~~~~l~~~l~~- 296 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE--VVYDPKELAKALEQ- 296 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE--ccCCHHhHHHHHHH-
Confidence 4699999999999999999887776 101222456666653321 112223333444444321 12223333333332
Q ss_pred hccCcEEEEEccc
Q 039262 255 LKEKKFVLLLDDI 267 (885)
Q Consensus 255 l~~k~~LlVlDdv 267 (885)
+. ..=++++|..
T Consensus 297 ~~-~~DlVlIDt~ 308 (424)
T PRK05703 297 LR-DCDVILIDTA 308 (424)
T ss_pred hC-CCCEEEEeCC
Confidence 23 3457888865
No 409
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.10 E-value=0.036 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.431 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998886
No 410
>PRK14527 adenylate kinase; Provisional
Probab=94.09 E-value=0.072 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|+|.+|+||||+|+.++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 411
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.09 E-value=0.18 Score=55.48 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=53.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccchhH---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRTEQ--- 246 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~--- 246 (885)
.-..++|.|..|+|||||.+.+++.. .-+.++++-+++.. .+.++....+..-+..... ..+.+...
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 45689999999999999999998875 22567788777754 3444443433321111100 01111111
Q ss_pred ---HHHHHHHHh--ccCcEEEEEcccc
Q 039262 247 ---KALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 247 ---~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
.+..+.+++ +++.+|+++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112233333 4799999999983
No 412
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.09 E-value=0.03 Score=30.47 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=5.4
Q ss_pred cCCEeecCCCCccccc
Q 039262 587 SLQHLDLSDTNVAVLP 602 (885)
Q Consensus 587 ~L~~L~L~~~~i~~Lp 602 (885)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.08 E-value=0.16 Score=59.17 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=51.4
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
++++|.++.++.+...+... +.+.++|+.|+||||+|+.+.+... ...|...+++.-+ ..+...+++.++..++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 46899998888777777654 3566999999999999999998872 3344444444332 23444557777766643
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=94.07 E-value=0.3 Score=49.22 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAI 228 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 228 (885)
.-.++.|.|.+|+|||++|.++..... + .-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~-~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--K-SGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--h-cCCeEEEEEEeCC--HHHHHHHH
Confidence 456899999999999999999877762 2 2345777776554 34454443
No 415
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.07 E-value=0.038 Score=53.62 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999886
No 416
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.07 E-value=0.05 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 417
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.06 E-value=0.036 Score=54.96 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|.+|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 418
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.05 E-value=0.29 Score=50.12 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999988765
No 419
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.02 E-value=0.055 Score=53.04 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEE
Q 039262 159 GLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVV 214 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 214 (885)
.+..+....++.|. ...+|.+.|++|+|||.||.+.+-+. -..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34455666677776 46799999999999999999887665 2358888888875
No 420
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.01 E-value=0.21 Score=55.07 Aligned_cols=92 Identities=20% Similarity=0.313 Sum_probs=56.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCc----cccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVND----TWKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~----- 244 (885)
.-.-++|.|.+|+|||||+.++..... .++=+.++++-+++.. .+.+++.++...-..... ...+.+.
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 446899999999999999999887762 2233477788777654 456666666543222110 0011111
Q ss_pred -hHHHHHHHHHh---ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL---KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l---~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslT 247 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIF 247 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchh
Confidence 11223345555 4689999999993
No 421
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.00 E-value=0.22 Score=54.43 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|++|.||||||+.+..-.
T Consensus 361 ~G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 361 AGEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CCceEEEECCCCccHHHHHHHHHccc
Confidence 44689999999999999999987654
No 422
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.98 E-value=0.086 Score=56.38 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=39.3
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+||.++.+..++-.+.+....-|.|.|..|+|||||++.+..-.
T Consensus 5 ~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 579999999888777777677778899999999999999998765
No 423
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.087 Score=51.60 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++-|.|-.++++.+...= +..+-|.++|++|+|||.||++|+++.
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 456788788887776531 467889999999999999999999986
No 424
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.064 Score=62.57 Aligned_cols=151 Identities=20% Similarity=0.262 Sum_probs=85.3
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC-----CEEEEEEEcCccCHHHHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNF-----DVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.++||++++.++++.|....-.--.++|.+|+|||++|.-++.+.. .+.- +..++- -++..
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv--~g~VP~~L~~~~i~s------------LD~g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV--NGDVPESLKDKRIYS------------LDLGS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh--cCCCCHHHcCCEEEE------------ecHHH
Confidence 3799999999999999875444456789999999999988888762 1111 111110 01111
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc-cCcEEEEEccccchh----------cccccccCCCCCCCCC-cEEEE-ecCCh
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK-EKKFVLLLDDIWERV----------DLSKVGIPLPGRLNNK-SKVVF-TTRSE 297 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~----------~~~~~~~~l~~~~~~g-s~iiv-TtR~~ 297 (885)
-.... .-..+.++....+.+.++ .++.+|.+|.+.... +-..+..|.. ..| -++|- ||-++
T Consensus 237 LvAGa---kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL---ARGeL~~IGATT~~E 310 (786)
T COG0542 237 LVAGA---KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL---ARGELRCIGATTLDE 310 (786)
T ss_pred Hhccc---cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH---hcCCeEEEEeccHHH
Confidence 11111 122345555555555554 358999999985321 1112222221 223 24444 44433
Q ss_pred hHhhh-------ccCcceEEeccCChhhHHHHHHHHh
Q 039262 298 EVCGL-------MEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 298 ~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
.-.. ...-+.+.+..-+.+++...++-..
T Consensus 311 -YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 -YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred -HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 2111 1234567888888888888887543
No 425
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.96 E-value=0.051 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 426
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.96 E-value=0.077 Score=48.95 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=28.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
++|.|+|..|+|||||++.+.+... ...+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~--~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK--RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh--HcCCceEEEEEccC
Confidence 4899999999999999999999983 34555555665554
No 427
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.96 E-value=0.039 Score=55.49 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|.+|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 428
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.89 E-value=2 Score=45.61 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=34.9
Q ss_pred eEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 308 KFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 308 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
++++++++.+|+..++.......-.......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987744432222333556677777779998543
No 429
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.88 E-value=0.28 Score=52.02 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCcc----ccccch-----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDT----WKNRRT----- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~----- 244 (885)
.-..++|+|..|.|||||++.+.+.. . -+..+..-+.. ..++.++.......-+..... ..+.+.
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~-~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT-T----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC-C----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 45689999999999999999988765 1 23444455543 344555555555443221100 011111
Q ss_pred -hHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 245 -EQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 245 -~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dslt 169 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLT 169 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 11122233333 4799999999983
No 430
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.87 E-value=0.051 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|+|+.|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 431
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.01 Score=56.37 Aligned_cols=64 Identities=22% Similarity=0.445 Sum_probs=36.0
Q ss_pred cCcccEEEeccCCCCCCC--CccC-CCCCcceEeEeccccccccccccccccccCccCCccceeecCCccccc
Q 039262 749 FHSLRKIQIDDCNKLKDL--TFLA-FAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQ 818 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l--~~l~-~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~ 818 (885)
++.++.|.+.+|..+.+. ..++ ..|+|+.|+|++|+.|++- +...+..|++|+.|.|.+++...
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~------GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG------GLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh------HHHHHHHhhhhHHHHhcCchhhh
Confidence 555566666666555442 1122 3466777777776666652 22345666677777776665543
No 432
>PRK05439 pantothenate kinase; Provisional
Probab=93.82 E-value=0.41 Score=50.41 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..-+|+|.|.+|+||||+|+.+....
T Consensus 85 ~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 85 VPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 55699999999999999999988765
No 433
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.82 E-value=0.19 Score=51.39 Aligned_cols=60 Identities=27% Similarity=0.383 Sum_probs=38.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCC-------CEEEEEEEcCc-cCHHHHHHHHHHHcCCCCc
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNF-------DVVIWVVVSKD-LRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~ 237 (885)
++.|+|.||+|||||+-..+=.....++-| ..+++|++... .++-.-++.+..+++++..
T Consensus 91 ~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPa 158 (402)
T COG3598 91 VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPA 158 (402)
T ss_pred eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChH
Confidence 455669999999999866544332222223 46777776553 3455556778888887653
No 434
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.34 Score=48.04 Aligned_cols=45 Identities=31% Similarity=0.421 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++-|=.++++++.+...- +..+-|.++|++|.|||-+|++|+|+.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 455777888888776532 356779999999999999999999986
No 435
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.81 E-value=0.079 Score=56.67 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.+||-++.+..|...+.+...+-|.|.|..|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999888888888888899999999999999997765
No 436
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.81 E-value=0.061 Score=51.21 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|..|+|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999999887
No 437
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.79 E-value=0.11 Score=50.88 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=28.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.|+|.|-||+||||+|..+..... .++.| .+.-|....+++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~-~~~~~-~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLL-SKGGY-NVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHH-hcCCc-eEEEEeCCCCCC
Confidence 689999999999999999666652 22223 355566666555
No 438
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.79 E-value=0.082 Score=56.40 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.++|.++.++.+.-.+.+.+..-+.+.|..|+||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3589999999888765554455679999999999999999997765
No 439
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.76 E-value=0.076 Score=55.23 Aligned_cols=54 Identities=20% Similarity=0.238 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-+++.|+|.+|+|||++|.++.... ......++||+....+ ..+.+...+ ++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e~~--~~l~~~~~~-~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEESP--EELLENARS-FGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecCCH--HHHHHHHHH-cCC
Confidence 56799999999999999999999887 3458889999887753 344444333 543
No 440
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=0.0066 Score=57.66 Aligned_cols=71 Identities=21% Similarity=0.435 Sum_probs=54.6
Q ss_pred ccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCC--CCccCCCCCcceEeEeccccccc
Q 039262 711 ALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKD--LTFLAFAPNLKSIEVNSCHGIQE 788 (885)
Q Consensus 711 ~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~ 788 (885)
.+.+++.++.|.+.+|..+.+...+.++ +..++|+.|+|++|+++++ +.++..+++|+.|.|.+.+.+..
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~--------~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLG--------GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhc--------ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 5667788888889888776654344443 1588999999999999886 45788999999999988766554
Q ss_pred c
Q 039262 789 I 789 (885)
Q Consensus 789 i 789 (885)
.
T Consensus 192 ~ 192 (221)
T KOG3864|consen 192 L 192 (221)
T ss_pred h
Confidence 3
No 441
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.74 E-value=0.054 Score=51.65 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999999887
No 442
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.71 E-value=0.1 Score=53.05 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHH
Q 039262 165 ERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQ 225 (885)
Q Consensus 165 ~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (885)
.+++..+.. .+..+|+|.|.+|+|||||.-.+...+ ...++--.++=|.-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 345555543 467799999999999999999998887 334444566666666666544443
No 443
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=1.6 Score=47.32 Aligned_cols=148 Identities=19% Similarity=0.203 Sum_probs=78.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhc
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK 256 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~ 256 (885)
|--.++|++|+|||+++.++++.. .||... +..+...+ .. .|++.|.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L-----~ydIyd-LeLt~v~~-----------------------n~----dLr~LL~ 282 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL-----NYDIYD-LELTEVKL-----------------------DS----DLRHLLL 282 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc-----CCceEE-eeeccccC-----------------------cH----HHHHHHH
Confidence 457899999999999999999987 344221 11111111 01 1333332
Q ss_pred --cCcEEEEEccccchhc-----------cc---------ccccCCCC-CCCC-CcEEEE-ecCChhHh-----hhccCc
Q 039262 257 --EKKFVLLLDDIWERVD-----------LS---------KVGIPLPG-RLNN-KSKVVF-TTRSEEVC-----GLMEAH 306 (885)
Q Consensus 257 --~k~~LlVlDdv~~~~~-----------~~---------~~~~~l~~-~~~~-gs~iiv-TtR~~~v~-----~~~~~~ 306 (885)
..+-+||+.|++-..+ .+ .+...+.+ +... +=|||| ||...+-. +.....
T Consensus 283 ~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 283 ATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred hCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcce
Confidence 2456777777753211 00 01111110 1122 346665 66654331 211234
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHh
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAM 363 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l 363 (885)
..+.|.-=+.+....|+....+... .+ .+..+|.+...|.-+.=..++..|
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~--~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEE--DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCC--Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 4677888888888889888876543 11 235566655556554444555444
No 444
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.71 E-value=0.11 Score=56.21 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=62.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
.....|.|.|..|.||||+++.+.+.. .......++. +.++... ..... ..+-... + .+.........++.
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~-e-vg~~~~~~~~~l~~ 190 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIIT-IEDPIEY--VHRNK-RSLINQR-E-VGLDTLSFANALRA 190 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEE-EcCChhh--hccCc-cceEEcc-c-cCCCCcCHHHHHHH
Confidence 345799999999999999999988876 2333444443 3322111 10000 0000000 0 01112234556777
Q ss_pred HhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhH
Q 039262 254 NLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEV 299 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v 299 (885)
.+...+=.|++|.+.+...+...... ...|-.|+.|+-..++
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~a----a~tGh~v~~T~Ha~~~ 232 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTA----AETGHLVFGTLHTNSA 232 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHH----HHcCCcEEEEEcCCCH
Confidence 78888999999999876655432222 1235456666554433
No 445
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.71 E-value=0.25 Score=54.22 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=56.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCC--CCCC---------EEEEEEEcCccCHHHHHHHHHHHcC-CCCcc----
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSP--TNFD---------VVIWVVVSKDLRLENIQEAIGEKIG-LVNDT---- 238 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~---------~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~~---- 238 (885)
.-.-++|.|-+|+|||||+.++.+.. ... ...| .++++-+++.....+.+.+.+..-+ +....
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~a 218 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLN 218 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEE
Confidence 44579999999999999999998875 210 0022 6777778887666665555555544 21100
Q ss_pred ccccch------hHHHHHHHHHhc---cCcEEEEEcccc
Q 039262 239 WKNRRT------EQKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 239 ~~~~~~------~~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
..+.+. ...+..+.+++. ++.+|+++||+-
T Consensus 219 tsd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 219 LANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 011111 112223445554 589999999983
No 446
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.68 E-value=0.093 Score=50.13 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 157 VVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++|....+.++++.+.. ....-|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 46777788888777654 334567799999999999999999865
No 447
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.66 E-value=0.051 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|.|.|..|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 448
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.63 E-value=0.15 Score=55.76 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=31.6
Q ss_pred HHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 163 QLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 163 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+.+++.+.......+.|.|.||+|||+|.+.+.+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34556666666677899999999999999999999987
No 449
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.63 E-value=0.28 Score=48.84 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|.|..|.|||||++.+....
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 55699999999999999999998875
No 450
>PRK13947 shikimate kinase; Provisional
Probab=93.61 E-value=0.056 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|+|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.61 E-value=0.27 Score=54.92 Aligned_cols=59 Identities=22% Similarity=0.308 Sum_probs=35.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCC
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~ 235 (885)
.+|++++|..|+||||++.+++.... ....-..+..|.... .....+-++..++.++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 47999999999999999999987762 122122345554432 122333445555555543
No 452
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.60 E-value=0.067 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999998875
No 453
>PRK13949 shikimate kinase; Provisional
Probab=93.57 E-value=0.059 Score=51.70 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-|.|+|+.|+||||+++.+++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 454
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.57 E-value=0.15 Score=59.23 Aligned_cols=55 Identities=20% Similarity=0.228 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.++..|.|.+|+||||++..+.....+....-...+.+..........+...+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 4799999999999999999887765221111124566665555555555555544
No 455
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.56 E-value=0.053 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 456
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.12 Score=46.70 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD 218 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 218 (885)
.+-|.|.|-+|+||||+|.+++... . .-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-----~---~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-----G---LEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-----C---CceEehhhH
Confidence 3468899999999999999999665 1 346666653
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.53 E-value=0.061 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 458
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.53 E-value=0.12 Score=51.82 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=36.6
Q ss_pred HHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHH
Q 039262 163 QLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENI 224 (885)
Q Consensus 163 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 224 (885)
...++++.+.. .+..+|+|.|.+|.|||||...+...+. ..++--.++=|.-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 34455555543 4678999999999999999999888873 2233334555555555553333
No 459
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=0.33 Score=47.60 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=39.8
Q ss_pred HHHHHHHhccCcEEEEEccccchhcccccc---cCCCCCCCCCcEEEEecCChhHhhhccCcceEEe
Q 039262 248 ALDIFRNLKEKKFVLLLDDIWERVDLSKVG---IPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKV 311 (885)
Q Consensus 248 ~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~---~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 311 (885)
...+.+.+--++-+.|||..++--|.+.+. ..+..-...|+-++|.|-.+.++.......+|-+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl 218 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVL 218 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEE
Confidence 344556666678899999987654433321 1111122457778888888999888765555433
No 460
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.7 Score=52.67 Aligned_cols=174 Identities=20% Similarity=0.189 Sum_probs=89.1
Q ss_pred CcccchHHHHHH---HHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLER---VWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.++-|.|+.+++ +++.|.+. -.+-|..+|++|.|||.||++++... .+. .| +.|..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-~VP-Ff------~iSGS---- 217 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVP-FF------SISGS---- 217 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-CCC-ce------eccch----
Confidence 356788766555 55666542 23568999999999999999999986 332 22 11111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch------------h----cccccccCCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER------------V----DLSKVGIPLPGR-LN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~----~~~~~~~~l~~~-~~ 285 (885)
+..+.+ .............+..++-++++++|.++.. . .+.++..-..+. .+
T Consensus 218 ----~FVemf-------VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ----DFVEMF-------VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ----hhhhhh-------cCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 011111 0111122223334445566889999887532 1 122222222211 11
Q ss_pred CCcEEEEecCChhHhhh-----ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 286 NKSKVVFTTRSEEVCGL-----MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 286 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
.|--||-.|-.++|... ..-...+.++.-+-..-.+.++-++........-++ ..|++.+-|.--|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl----~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDL----KKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCH----HHHhhhCCCcccc
Confidence 23333434444555321 122345666666656666777766644332222233 3377777776543
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.50 E-value=0.43 Score=54.43 Aligned_cols=96 Identities=16% Similarity=0.130 Sum_probs=56.6
Q ss_pred HHHHHHccC--CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc----
Q 039262 166 RVWRCLVQE--PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---- 239 (885)
Q Consensus 166 ~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---- 239 (885)
.+-+.|..+ .-.++.|.|.+|+|||||+.++..... ..-+.+++++..+. ..++.+.+ ++++......
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g 324 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC---ANKERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQG 324 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCC
Confidence 344444442 557999999999999999999988762 23356777766553 44555543 4555432110
Q ss_pred ---------cccchhHHHHHHHHHhcc-CcEEEEEccc
Q 039262 240 ---------KNRRTEQKALDIFRNLKE-KKFVLLLDDI 267 (885)
Q Consensus 240 ---------~~~~~~~~~~~l~~~l~~-k~~LlVlDdv 267 (885)
.....++....+.+.+.. +.-.+|+|.+
T Consensus 325 ~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 325 LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 111224445555555543 4446777776
No 462
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.44 E-value=0.074 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|+|.+|+||||+|+.++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999887
No 463
>PF13245 AAA_19: Part of AAA domain
Probab=93.43 E-value=0.15 Score=41.18 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCCCcHHHHHH-HHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMA-LINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~-~v~~~~ 200 (885)
+.+++.|.|.+|.|||+++. .+..-.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788899999999995554 444443
No 464
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.39 E-value=0.24 Score=54.66 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCc-----cccccchh---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVND-----TWKNRRTE--- 245 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-----~~~~~~~~--- 245 (885)
.-..++|+|..|+|||||++.+.... ..+.++...+.... +..++...+...-+.... ..+.....
T Consensus 167 ~GqrigI~G~sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 167 RGQRLGLFAGTGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887653 22444444444433 445555555544332110 00111111
Q ss_pred --HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 246 --QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 246 --~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122233333 5799999999983
No 465
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.39 E-value=0.11 Score=48.60 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 163 QLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 163 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|.+.+.. +++.++|..|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 35667777654 799999999999999999998874
No 466
>PRK15453 phosphoribulokinase; Provisional
Probab=93.39 E-value=0.37 Score=49.46 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|.+|+||||+|+.+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998776
No 467
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.37 E-value=0.11 Score=52.25 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|++|+||||+|+.++...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 468
>PRK09099 type III secretion system ATPase; Provisional
Probab=93.36 E-value=0.3 Score=53.99 Aligned_cols=90 Identities=20% Similarity=0.279 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc----ccccch------
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT----WKNRRT------ 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~------ 244 (885)
.-..++|.|..|+|||||++.+.... .. -..+++..-.+...+.++.+.+...-+..... ..+.+.
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~-~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGT-QC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 55789999999999999999998765 11 12344433333444555555554432221100 011111
Q ss_pred hHHHHHHHHHh--ccCcEEEEEcccc
Q 039262 245 EQKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 245 ~~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
...+..+.+++ +++.+|+++||+-
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslT 263 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLT 263 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchh
Confidence 11122233444 4789999999983
No 469
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.35 E-value=0.075 Score=55.00 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.|.|.|.+|+||||+|+.+...+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999987
No 470
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.35 E-value=0.13 Score=54.37 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQE 226 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 226 (885)
.+++.+.|.||+||||+|.+.+-..+ ..+ ..++-|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA--~~g-~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLA--ESG-KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHH--HcC-CcEEEEEeCCCCchHhhhc
Confidence 47899999999999999999766663 222 4477777666555555544
No 471
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.32 E-value=0.3 Score=50.04 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=50.3
Q ss_pred CCcEEEEEcCCCCcHHHHH-HHHHHhhcCCCCCCCEE-EEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccchhH-
Q 039262 175 PAGIVGLYGMGGVGKTTLM-ALINNKFLGSPTNFDVV-IWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRTEQ- 246 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~- 246 (885)
.-.-++|.|.+|+|||+|| ..+.+.. +-+.+ +++-+++.. .+.++.+.+.+.-...... ..+.+...
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r 142 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQ 142 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHH
Confidence 3457999999999999996 5565542 22434 666676654 4556666665432221100 01111111
Q ss_pred -----HHHHHHHHh--ccCcEEEEEcccc
Q 039262 247 -----KALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 247 -----~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
.+..+.+++ +++.+|+|+||+-
T Consensus 143 ~~a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 143 YLAPYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 112223332 4789999999984
No 472
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.30 E-value=0.08 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|+|+.|+||||+++.+.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 4579999999999999999999886
No 473
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.30 E-value=0.17 Score=51.59 Aligned_cols=53 Identities=30% Similarity=0.360 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcC----CCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLG----SPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
+..|+|++|+||||++..+...... ....-+..+-++...+..+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 7999999999999877666665511 0123344444455444444444444444
No 474
>PRK14530 adenylate kinase; Provisional
Probab=93.28 E-value=0.073 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998886
No 475
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.25 E-value=0.055 Score=64.67 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred cCcEEEEEccccchhc---cc----ccccCCCCCCCCCcEEEEecCChhHhhhccCcceEEeccCChh-hHHHHHHHHhc
Q 039262 257 EKKFVLLLDDIWERVD---LS----KVGIPLPGRLNNKSKVVFTTRSEEVCGLMEAHKKFKVECLSHN-DAWELFRQKVG 328 (885)
Q Consensus 257 ~k~~LlVlDdv~~~~~---~~----~~~~~l~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~ 328 (885)
..+-|+++|..-...+ -. .+...+. ..|+.+|+||-...+.........+....+..+ +... |..+.-
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~---~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Ykl~ 476 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL---KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTYKLL 476 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEEEEC
Confidence 4789999999854322 11 1222222 357899999999887543322211111111111 1110 000110
Q ss_pred CCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhc
Q 039262 329 GETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRT 381 (885)
Q Consensus 329 ~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 381 (885)
... +. ...|-.|++++ |+|-.|.--|..+.. ....+.+.++..+..
T Consensus 477 ~G~--~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 477 KGI--PG---ESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSA 522 (771)
T ss_pred CCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 000 00 23477888777 788887777766654 234456666655544
No 476
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.25 E-value=0.21 Score=59.78 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|+...+.++.+.+.. ....-|.|+|..|+|||++|+.+++.-
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 589999888888776653 345578999999999999999998875
No 477
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.22 E-value=0.066 Score=53.56 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
.+++.|+|..|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 478
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.21 E-value=0.83 Score=48.64 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998887
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.20 E-value=0.069 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 480
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.19 E-value=0.075 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998876
No 481
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.18 E-value=0.074 Score=50.20 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 482
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.18 E-value=0.07 Score=49.70 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 039262 178 IVGLYGMGGVGKTTLMALIN 197 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~ 197 (885)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 483
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.14 E-value=0.096 Score=52.30 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=27.6
Q ss_pred HHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 169 RCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 169 ~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.+...++++|+++|..|+|||||..++.+..
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34455689999999999999999999998875
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.13 E-value=0.28 Score=57.08 Aligned_cols=27 Identities=33% Similarity=0.603 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.-..++|+|..|.|||||++.+..-.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356799999999999999999998765
No 485
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.10 E-value=0.31 Score=53.66 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=51.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCCCc----cccccchh---
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKIGLVND----TWKNRRTE--- 245 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~----~~~~~~~~--- 245 (885)
..-..++|+|..|+|||||++.+.+.. +.+..++..++.. ..+.+.+.+....-..... ...+.+..
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~ 227 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERV 227 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHH
Confidence 355689999999999999999887654 2344566666554 3344555544321111000 00111111
Q ss_pred ---HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 246 ---QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 246 ---~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+..+.+++ +++.+|+++||+-
T Consensus 228 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 228 RALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 1122233444 4789999999983
No 486
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=3.4 Score=43.19 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=38.7
Q ss_pred cCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhhhc-cCcceEEeccCChhhHHHHHH
Q 039262 257 EKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGLM-EAHKKFKVECLSHNDAWELFR 324 (885)
Q Consensus 257 ~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~e~~~Lf~ 324 (885)
+++=++|+||++.. .....+...+. ....++.+|++|.+. .+.... .....+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLE-EPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIE-EPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhc-CCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 45668999999653 34555555554 345566677766554 343322 2345677766 6666666654
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.06 E-value=0.081 Score=45.70 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALIN 197 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~ 197 (885)
.-..++|+|..|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34689999999999999999975
No 488
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.06 E-value=0.11 Score=49.12 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999998874
No 489
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.06 E-value=0.37 Score=53.58 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC--EEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----ccccch---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD--VVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----WKNRRT--- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~--~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~--- 244 (885)
.-.-++|.|-.|+|||||+.++.+.. ...+.+. .++++-+++.. .+.+++..+...-.+...- ..+.+.
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 34579999999999999999998875 2211121 56777776654 4555666665432221100 011111
Q ss_pred ---hHHHHHHHHHhc---cCcEEEEEcccc
Q 039262 245 ---EQKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 245 ---~~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
...+..+.++++ ++++|+++||+-
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslT 248 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMT 248 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChh
Confidence 112233455554 688999999983
No 490
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.05 E-value=0.076 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997765
No 491
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.04 E-value=0.13 Score=59.17 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+++|.+..++.+...+......-|.|+|..|+|||++|+.+++..
T Consensus 66 ~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999888776666678899999999999999998753
No 492
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.04 E-value=0.08 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998876
No 493
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.04 E-value=0.6 Score=48.90 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.-.++.|.|.+|+||||++.+++.... ..+-..++|++.... ..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI--TQHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH--HhcCceEEEEEcccC--HHHHHHHHHHH
Confidence 345899999999999999999887762 222356888887653 34555555443
No 494
>PRK13948 shikimate kinase; Provisional
Probab=93.03 E-value=0.099 Score=50.59 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+.|.++|+.|+||||+++.+.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999886
No 495
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.02 E-value=0.082 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 039262 179 VGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 179 v~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|.|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999999887
No 496
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.65 Score=55.34 Aligned_cols=100 Identities=18% Similarity=0.290 Sum_probs=64.3
Q ss_pred cccchHHHHHHHHHHHcc------C--CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ------E--PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (885)
.++|-++.+..|.+.+.. + +.-...+.|+.|+|||-||++++... -+..+..+-|+.|.-..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~e------- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQE------- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhh-------
Confidence 467888888888887764 1 34578899999999999999999887 45555555555444221
Q ss_pred HHHHcCCCCccccccchhHHHHHHHHHhccCcE-EEEEccccc
Q 039262 228 IGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKF-VLLLDDIWE 269 (885)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~ 269 (885)
+.+-.+.+. ...+ .+....+-+.++.++| +|.||||..
T Consensus 633 vskligsp~-gyvG---~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 633 VSKLIGSPP-GYVG---KEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred hhhccCCCc-cccc---chhHHHHHHHHhcCCceEEEEechhh
Confidence 222222211 1111 2233467777888877 566799964
No 497
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.97 E-value=0.095 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999885
No 498
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.94 E-value=0.55 Score=52.91 Aligned_cols=26 Identities=42% Similarity=0.654 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.++...
T Consensus 49 ~GEivgIiGpNGSGKSTLLkiLaGLl 74 (549)
T PRK13545 49 EGEIVGIIGLNGSGKSTLSNLIAGVT 74 (549)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998875
No 499
>PRK13946 shikimate kinase; Provisional
Probab=92.94 E-value=0.094 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+.|.++|+.|+||||+++.+.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 500
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.94 E-value=0.083 Score=52.58 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+|+|+|++|+|||||.+.++.-.
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998754
Done!