Query 039262
Match_columns 885
No_of_seqs 539 out of 4236
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-47 4E-52 442.8 22.8 312 156-490 129-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 4.5E-39 1.5E-43 372.3 17.0 286 155-483 128-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1E-36 3.5E-41 390.9 27.1 310 154-489 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-34 5.6E-39 338.9 26.7 305 154-487 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 7.2E-24 2.4E-28 231.3 21.9 290 510-846 39-328 (347)
6 4fmz_A Internalin; leucine ric 99.9 6.1E-23 2.1E-27 223.9 24.5 298 496-839 47-344 (347)
7 2id5_A Lingo-1, leucine rich r 99.9 9.1E-23 3.1E-27 232.8 26.1 309 497-838 15-330 (477)
8 2id5_A Lingo-1, leucine rich r 99.9 1.8E-22 6E-27 230.4 24.4 307 518-858 14-325 (477)
9 3v47_A TOLL-like receptor 5B a 99.9 2.7E-22 9.3E-27 227.6 25.6 337 496-860 13-402 (455)
10 4ecn_A Leucine-rich repeat pro 99.9 1.3E-22 4.5E-27 242.7 22.7 328 511-867 444-841 (876)
11 3o6n_A APL1; leucine-rich repe 99.9 1.3E-22 4.5E-27 225.0 20.4 290 513-849 43-338 (390)
12 1o6v_A Internalin A; bacterial 99.9 1.3E-21 4.3E-26 222.3 26.1 139 498-646 51-189 (466)
13 4eco_A Uncharacterized protein 99.9 2.1E-22 7.1E-27 237.2 20.1 327 511-865 202-599 (636)
14 2z81_A CD282 antigen, TOLL-lik 99.9 6E-22 2.1E-26 230.5 23.6 148 498-648 10-162 (549)
15 2ft3_A Biglycan; proteoglycan, 99.9 3E-22 1E-26 216.7 18.9 294 516-839 34-331 (332)
16 2z63_A TOLL-like receptor 4, v 99.9 1.6E-21 5.5E-26 228.1 25.2 145 497-646 11-161 (570)
17 3vq2_A TLR4, TOLL-like recepto 99.9 3.1E-21 1.1E-25 227.3 27.6 147 497-647 15-166 (606)
18 3oja_B Anopheles plasmodium-re 99.9 8.2E-22 2.8E-26 230.8 21.9 284 513-839 49-356 (597)
19 3t6q_A CD180 antigen; protein- 99.9 2E-21 7E-26 228.9 25.0 171 497-678 16-192 (606)
20 1o6v_A Internalin A; bacterial 99.9 2.3E-21 7.9E-26 220.1 24.3 291 513-845 44-347 (466)
21 1xku_A Decorin; proteoglycan, 99.9 2.7E-21 9.2E-26 209.1 23.1 293 516-838 32-329 (330)
22 3oja_B Anopheles plasmodium-re 99.9 4.9E-22 1.7E-26 232.7 18.5 284 534-850 48-345 (597)
23 3t6q_A CD180 antigen; protein- 99.9 3.2E-21 1.1E-25 227.2 24.8 138 582-727 274-411 (606)
24 2z7x_B TOLL-like receptor 1, v 99.9 3.9E-21 1.3E-25 221.9 24.7 142 496-646 3-150 (520)
25 2z63_A TOLL-like receptor 4, v 99.9 1.7E-21 5.7E-26 227.9 21.8 338 511-862 48-527 (570)
26 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-21 4.4E-26 230.6 20.7 179 661-859 346-551 (606)
27 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-21 1.7E-25 233.4 26.4 149 496-648 7-162 (844)
28 3o6n_A APL1; leucine-rich repe 99.9 3.5E-21 1.2E-25 213.5 22.1 270 534-847 42-313 (390)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-20 3.4E-25 220.4 27.0 142 496-646 34-181 (562)
30 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-21 1.1E-25 217.1 21.1 299 501-838 50-349 (457)
31 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.4E-26 219.0 19.2 289 510-846 37-335 (457)
32 4fcg_A Uncharacterized protein 99.9 2.4E-21 8.2E-26 208.5 17.2 90 536-628 80-169 (328)
33 3rgz_A Protein brassinosteroid 99.9 2.2E-21 7.5E-26 234.0 18.2 130 512-646 197-330 (768)
34 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-20 6.2E-25 223.9 25.0 171 496-677 7-183 (680)
35 2z7x_B TOLL-like receptor 1, v 99.9 1E-20 3.5E-25 218.4 22.0 124 518-648 3-129 (520)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.5E-20 1.2E-24 215.7 25.4 148 516-677 32-181 (562)
37 4ecn_A Leucine-rich repeat pro 99.9 1E-20 3.5E-25 226.3 20.8 306 513-846 489-844 (876)
38 3rgz_A Protein brassinosteroid 99.8 8.3E-21 2.8E-25 228.9 18.3 283 535-847 267-557 (768)
39 4eco_A Uncharacterized protein 99.8 4.7E-21 1.6E-25 225.6 15.4 306 513-847 247-605 (636)
40 3v47_A TOLL-like receptor 5B a 99.8 2.6E-20 9E-25 211.2 20.6 317 497-840 34-407 (455)
41 2z81_A CD282 antigen, TOLL-lik 99.8 2.5E-20 8.5E-25 216.8 20.7 132 511-645 46-183 (549)
42 4fcg_A Uncharacterized protein 99.8 1.7E-20 5.8E-25 201.9 17.5 86 560-648 79-164 (328)
43 3j0a_A TOLL-like receptor 5; m 99.8 1.1E-19 3.7E-24 221.6 26.1 175 518-702 7-185 (844)
44 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-19 7.6E-24 214.5 26.5 268 518-813 7-305 (680)
45 1ogq_A PGIP-2, polygalacturona 99.8 2.3E-20 7.7E-25 199.7 13.9 128 516-646 51-186 (313)
46 2z80_A TOLL-like receptor 2, v 99.8 1.3E-19 4.5E-24 197.7 17.5 148 520-677 36-186 (353)
47 1ogq_A PGIP-2, polygalacturona 99.8 1.2E-19 4.1E-24 194.1 15.6 253 537-846 50-309 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 8.5E-19 2.9E-23 207.9 23.2 142 500-646 38-185 (635)
49 2z80_A TOLL-like receptor 2, v 99.8 5E-19 1.7E-23 193.2 18.8 267 497-815 35-312 (353)
50 2z66_A Variable lymphocyte rec 99.8 4.9E-19 1.7E-23 189.1 18.0 241 519-814 11-258 (306)
51 1xku_A Decorin; proteoglycan, 99.8 1.5E-18 5.3E-23 187.4 21.4 263 537-839 31-304 (330)
52 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.6E-23 205.4 22.4 126 497-625 56-188 (635)
53 3zyi_A Leucine-rich repeat-con 99.8 9.3E-19 3.2E-23 197.8 18.7 221 515-784 75-301 (452)
54 3zyi_A Leucine-rich repeat-con 99.8 1.4E-18 4.7E-23 196.4 19.8 242 517-815 56-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.8 3.5E-18 1.2E-22 197.9 23.3 253 496-815 43-295 (622)
56 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-18 5.8E-23 187.2 18.9 280 498-815 38-331 (332)
57 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.3E-23 194.6 19.5 221 515-784 64-290 (440)
58 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.4E-22 191.8 24.0 255 516-839 41-295 (622)
59 2z66_A Variable lymphocyte rec 99.8 4.7E-18 1.6E-22 181.5 17.6 243 540-839 10-259 (306)
60 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 191.4 8.3 269 534-842 31-300 (317)
61 1jl5_A Outer protein YOPM; leu 99.8 3.5E-17 1.2E-21 183.9 25.3 178 515-727 111-288 (454)
62 3zyj_A Leucine-rich repeat-con 99.8 5.9E-18 2E-22 190.5 18.6 156 511-678 84-244 (440)
63 1jl5_A Outer protein YOPM; leu 99.8 3.1E-17 1.1E-21 184.4 23.3 281 497-843 115-410 (454)
64 3o53_A Protein LRIM1, AGAP0063 99.8 4.3E-18 1.5E-22 182.5 14.0 268 538-848 11-282 (317)
65 1ozn_A Reticulon 4 receptor; N 99.7 2.4E-17 8.3E-22 173.9 18.8 219 518-785 14-237 (285)
66 1ozn_A Reticulon 4 receptor; N 99.7 8.6E-18 2.9E-22 177.4 13.4 217 498-761 16-236 (285)
67 3oja_A Leucine-rich immune mol 99.7 3.1E-17 1.1E-21 186.2 15.2 237 534-836 31-270 (487)
68 3oja_A Leucine-rich immune mol 99.7 1.3E-17 4.3E-22 189.5 9.2 236 514-815 33-273 (487)
69 1h6u_A Internalin H; cell adhe 99.7 1.8E-16 6.3E-21 168.8 16.8 193 536-789 40-232 (308)
70 4ay9_X Follicle-stimulating ho 99.7 5.9E-16 2E-20 168.3 17.9 237 540-836 12-254 (350)
71 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 7.9E-21 161.6 13.7 112 527-644 23-140 (239)
72 1h6u_A Internalin H; cell adhe 99.7 1.7E-16 5.7E-21 169.1 13.0 192 558-815 37-228 (308)
73 2z62_A TOLL-like receptor 4, v 99.7 5.8E-16 2E-20 162.4 16.9 203 537-784 28-235 (276)
74 1p9a_G Platelet glycoprotein I 99.7 4.6E-16 1.6E-20 163.9 15.4 130 513-647 8-137 (290)
75 2xwt_C Thyrotropin receptor; s 99.7 3.2E-16 1.1E-20 160.6 13.1 93 550-647 23-118 (239)
76 2qen_A Walker-type ATPase; unk 99.7 5.4E-15 1.8E-19 161.0 23.6 291 154-484 11-349 (350)
77 3rfs_A Internalin B, repeat mo 99.7 3E-16 1E-20 164.0 12.2 130 512-646 38-169 (272)
78 1wwl_A Monocyte differentiatio 99.7 6.6E-17 2.2E-21 172.8 7.2 241 537-838 43-306 (312)
79 2o6q_A Variable lymphocyte rec 99.7 1.1E-15 3.6E-20 159.8 16.3 127 516-646 17-145 (270)
80 2o6q_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 158.4 17.1 169 497-676 20-192 (270)
81 4ay9_X Follicle-stimulating ho 99.7 7.7E-16 2.6E-20 167.4 15.2 239 519-782 13-255 (350)
82 2z62_A TOLL-like receptor 4, v 99.6 1.3E-15 4.6E-20 159.7 15.6 214 500-760 14-234 (276)
83 1wwl_A Monocyte differentiatio 99.6 1.9E-16 6.5E-21 169.2 8.6 244 516-814 44-306 (312)
84 2fna_A Conserved hypothetical 99.6 2.2E-14 7.5E-19 156.6 23.9 290 154-483 12-356 (357)
85 1p9a_G Platelet glycoprotein I 99.6 4.1E-15 1.4E-19 156.7 15.5 198 534-784 7-206 (290)
86 1w5s_A Origin recognition comp 99.6 1.1E-14 3.7E-19 162.5 18.8 291 155-468 22-371 (412)
87 1z7x_W Ribonuclease inhibitor; 99.6 7.4E-17 2.5E-21 183.1 -0.4 311 514-842 55-411 (461)
88 3rfs_A Internalin B, repeat mo 99.6 9.3E-15 3.2E-19 152.7 15.2 170 497-676 45-216 (272)
89 3ogk_B Coronatine-insensitive 99.6 2.4E-16 8.1E-21 185.0 2.4 87 749-843 435-527 (592)
90 3ogk_B Coronatine-insensitive 99.6 6.8E-16 2.3E-20 181.1 6.3 258 558-842 216-501 (592)
91 1z7x_W Ribonuclease inhibitor; 99.6 1E-16 3.5E-21 181.9 -0.9 88 749-842 283-383 (461)
92 2ast_B S-phase kinase-associat 99.6 1.1E-15 3.9E-20 165.3 5.4 104 537-644 70-178 (336)
93 1h6t_A Internalin B; cell adhe 99.6 1.6E-14 5.6E-19 152.2 14.1 170 511-727 42-211 (291)
94 3m19_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 146.6 15.6 150 516-676 15-166 (251)
95 3m19_A Variable lymphocyte rec 99.6 4.1E-14 1.4E-18 145.9 16.2 171 497-678 18-192 (251)
96 1m9s_A Internalin B; cell inva 99.6 4.2E-15 1.4E-19 171.9 9.2 105 533-646 39-143 (605)
97 4ezg_A Putative uncharacterize 99.5 1.5E-14 5.2E-19 143.0 11.3 152 512-678 41-194 (197)
98 2p1m_B Transport inhibitor res 99.5 1.2E-15 4.1E-20 179.2 3.0 83 749-840 431-518 (594)
99 2ast_B S-phase kinase-associat 99.5 3.9E-15 1.3E-19 161.1 6.5 128 515-645 70-206 (336)
100 2ca6_A RAN GTPase-activating p 99.5 3.6E-15 1.2E-19 164.7 5.9 139 534-678 29-200 (386)
101 3goz_A Leucine-rich repeat-con 99.5 2E-14 6.8E-19 157.0 9.5 244 536-815 21-295 (362)
102 1h6t_A Internalin B; cell adhe 99.5 2E-13 6.8E-18 143.9 16.8 166 496-679 49-214 (291)
103 1m9s_A Internalin B; cell inva 99.5 4.7E-14 1.6E-18 163.2 12.3 169 510-700 38-206 (605)
104 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 139.0 14.5 129 515-646 40-171 (229)
105 3qfl_A MLA10; coiled-coil, (CC 99.5 4.5E-14 1.6E-18 123.7 8.0 82 10-99 2-84 (115)
106 2ca6_A RAN GTPase-activating p 99.5 3.3E-15 1.1E-19 165.0 0.4 249 539-815 11-314 (386)
107 2v9t_B SLIT homolog 2 protein 99.5 1.6E-13 5.4E-18 138.1 12.6 148 519-677 15-164 (220)
108 1xeu_A Internalin C; cellular 99.5 1.6E-13 5.3E-18 142.3 11.9 155 506-679 32-186 (263)
109 4glp_A Monocyte differentiatio 99.5 5E-14 1.7E-18 150.3 7.9 209 561-815 90-305 (310)
110 2v9t_B SLIT homolog 2 protein 99.5 3.9E-13 1.3E-17 135.2 13.8 148 497-648 15-166 (220)
111 4ezg_A Putative uncharacterize 99.5 5.5E-13 1.9E-17 131.8 14.1 146 496-647 47-194 (197)
112 2p1m_B Transport inhibitor res 99.4 6.9E-15 2.4E-19 172.6 -0.1 81 513-595 154-244 (594)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 5E-13 1.7E-17 134.4 12.7 149 518-677 14-165 (220)
114 2o6s_A Variable lymphocyte rec 99.4 4E-13 1.4E-17 134.1 11.6 124 520-647 12-137 (208)
115 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.4E-18 145.3 10.1 129 516-647 92-237 (310)
116 2v70_A SLIT-2, SLIT homolog 2 99.4 6.1E-13 2.1E-17 133.8 12.7 149 497-649 15-168 (220)
117 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 130.1 14.9 146 498-647 12-161 (208)
118 3goz_A Leucine-rich repeat-con 99.4 4.9E-14 1.7E-18 153.9 4.5 259 542-839 3-295 (362)
119 1xeu_A Internalin C; cellular 99.4 8.1E-14 2.8E-18 144.4 5.8 165 515-727 19-183 (263)
120 3e6j_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 134.3 12.6 150 517-678 21-172 (229)
121 2qby_B CDC6 homolog 3, cell di 99.4 1.6E-11 5.6E-16 135.2 23.5 289 155-468 20-339 (384)
122 2xot_A Amphoterin-induced prot 99.4 8.6E-13 2.9E-17 143.8 12.3 169 498-677 23-201 (361)
123 2ell_A Acidic leucine-rich nuc 99.4 8.4E-13 2.9E-17 126.8 10.0 128 515-647 24-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.4 9.6E-13 3.3E-17 123.5 9.3 123 515-642 17-148 (149)
125 2v1u_A Cell division control p 99.4 1.9E-11 6.4E-16 134.9 20.8 290 155-468 19-351 (387)
126 3cvr_A Invasion plasmid antige 99.4 3.6E-12 1.2E-16 145.7 15.0 138 516-682 60-197 (571)
127 1a9n_A U2A', U2A'; complex (nu 99.4 8.8E-13 3E-17 127.6 8.3 128 513-645 17-151 (176)
128 3cvr_A Invasion plasmid antige 99.4 3.2E-12 1.1E-16 146.0 13.7 187 537-789 59-246 (571)
129 1fnn_A CDC6P, cell division co 99.3 7.3E-11 2.5E-15 130.3 23.7 287 155-468 17-351 (389)
130 2xot_A Amphoterin-induced prot 99.3 3.1E-12 1.1E-16 139.4 11.7 156 518-681 21-179 (361)
131 2qby_A CDC6 homolog 1, cell di 99.3 2.4E-11 8.2E-16 134.0 17.6 291 155-468 20-348 (386)
132 2ell_A Acidic leucine-rich nuc 99.3 3.4E-12 1.2E-16 122.5 9.4 136 535-679 22-161 (168)
133 2o6r_A Variable lymphocyte rec 99.3 2.4E-11 8.1E-16 117.7 12.4 127 518-648 10-138 (177)
134 2wfh_A SLIT homolog 2 protein 99.3 2.1E-11 7.1E-16 119.7 12.0 125 518-647 13-139 (193)
135 1w8a_A SLIT protein; signaling 99.3 1.4E-11 4.8E-16 120.9 10.6 127 518-648 11-140 (192)
136 2wfh_A SLIT homolog 2 protein 99.2 2.3E-11 7.8E-16 119.3 11.0 125 540-677 13-138 (193)
137 2je0_A Acidic leucine-rich nuc 99.2 7.3E-12 2.5E-16 117.4 6.8 129 535-672 15-147 (149)
138 1a9n_A U2A', U2A'; complex (nu 99.2 2.8E-11 9.7E-16 116.9 9.8 123 496-620 22-151 (176)
139 1njg_A DNA polymerase III subu 99.2 1.5E-10 5.2E-15 118.6 15.4 197 155-363 23-231 (250)
140 4b8c_D Glucose-repressible alc 99.2 2.1E-11 7.3E-16 144.7 10.1 115 553-678 215-329 (727)
141 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.1E-16 119.3 8.7 126 540-678 11-139 (192)
142 4b8c_D Glucose-repressible alc 99.2 2.4E-11 8.2E-16 144.3 9.3 109 534-647 221-329 (727)
143 1dce_A Protein (RAB geranylger 99.2 4.4E-11 1.5E-15 137.5 10.5 119 516-639 442-565 (567)
144 1dce_A Protein (RAB geranylger 99.2 6.4E-11 2.2E-15 136.1 11.0 123 538-671 442-566 (567)
145 1ds9_A Outer arm dynein; leuci 99.1 3.6E-12 1.2E-16 125.9 -1.9 109 533-647 44-153 (198)
146 2chg_A Replication factor C sm 99.1 4.8E-10 1.6E-14 113.0 13.6 183 155-360 17-204 (226)
147 2o6r_A Variable lymphocyte rec 99.1 3.4E-10 1.2E-14 109.4 11.7 121 498-621 12-136 (177)
148 3sb4_A Hypothetical leucine ri 99.1 3.4E-10 1.2E-14 121.5 11.5 121 513-642 23-156 (329)
149 2r9u_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 108.9 9.5 101 540-646 15-117 (174)
150 3g39_A Variable lymphocyte rec 99.0 4.1E-10 1.4E-14 107.8 9.4 103 539-647 11-115 (170)
151 3sb4_A Hypothetical leucine ri 99.0 8.9E-10 3.1E-14 118.2 13.0 99 514-618 48-157 (329)
152 2r9u_A Variable lymphocyte rec 99.0 6.7E-10 2.3E-14 106.7 10.4 106 518-627 15-122 (174)
153 4fdw_A Leucine rich hypothetic 99.0 1.8E-08 6.1E-13 110.5 21.0 98 538-642 136-234 (401)
154 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.6E-14 105.0 9.5 101 517-620 11-113 (170)
155 1ds9_A Outer arm dynein; leuci 99.0 2.7E-11 9.3E-16 119.6 -2.1 129 539-679 25-154 (198)
156 1sxj_B Activator 1 37 kDa subu 98.9 4.4E-09 1.5E-13 112.5 11.2 184 155-361 21-211 (323)
157 4fdw_A Leucine rich hypothetic 98.9 4.9E-08 1.7E-12 107.0 19.2 237 516-812 136-378 (401)
158 1hqc_A RUVB; extended AAA-ATPa 98.9 2.2E-08 7.5E-13 107.1 15.9 261 155-467 12-324 (324)
159 1iqp_A RFCS; clamp loader, ext 98.7 1.7E-08 5.8E-13 108.2 9.8 182 155-362 25-214 (327)
160 2ifg_A High affinity nerve gro 98.7 3.5E-08 1.2E-12 106.7 9.5 98 520-619 13-113 (347)
161 2ifg_A High affinity nerve gro 98.7 3.4E-08 1.1E-12 106.8 9.3 104 540-648 11-117 (347)
162 2chq_A Replication factor C sm 98.6 2.6E-07 9.1E-12 98.4 13.5 179 155-359 17-203 (319)
163 3te6_A Regulatory protein SIR3 98.6 4.7E-07 1.6E-11 94.4 14.8 170 156-328 21-212 (318)
164 1jr3_A DNA polymerase III subu 98.6 3.8E-07 1.3E-11 99.6 14.1 193 155-360 16-221 (373)
165 1jbk_A CLPB protein; beta barr 98.5 1.1E-07 3.7E-12 93.0 7.5 46 155-200 22-67 (195)
166 3bos_A Putative DNA replicatio 98.5 2.7E-07 9.1E-12 93.9 9.2 172 156-360 29-217 (242)
167 4fs7_A Uncharacterized protein 98.5 2.4E-06 8.3E-11 93.8 17.0 119 691-836 253-374 (394)
168 3un9_A NLR family member X1; l 98.4 2.2E-08 7.6E-13 108.6 0.0 156 516-678 73-252 (372)
169 3un9_A NLR family member X1; l 98.4 4.2E-08 1.4E-12 106.4 1.4 134 537-677 72-223 (372)
170 4fs7_A Uncharacterized protein 98.4 1.3E-05 4.3E-10 88.1 19.7 283 533-860 67-373 (394)
171 4gt6_A Cell surface protein; l 98.4 1.5E-05 5.1E-10 87.5 20.0 104 710-836 259-365 (394)
172 1sxj_A Activator 1 95 kDa subu 98.3 2.6E-06 8.8E-11 96.7 12.7 187 155-360 39-253 (516)
173 2z4s_A Chromosomal replication 98.3 1E-06 3.4E-11 97.7 9.1 179 156-357 106-303 (440)
174 3h4m_A Proteasome-activating n 98.3 8.1E-06 2.8E-10 85.2 15.5 176 155-357 17-228 (285)
175 1d2n_A N-ethylmaleimide-sensit 98.3 4.2E-05 1.5E-09 79.0 20.1 196 156-382 34-264 (272)
176 3pvs_A Replication-associated 98.3 1.3E-05 4.6E-10 88.4 17.1 174 155-358 26-213 (447)
177 1sxj_D Activator 1 41 kDa subu 98.3 2E-06 6.8E-11 93.0 10.0 192 155-359 37-234 (353)
178 3syl_A Protein CBBX; photosynt 98.2 4.7E-06 1.6E-10 88.2 10.9 154 156-329 32-219 (309)
179 1sxj_E Activator 1 40 kDa subu 98.2 2.6E-06 8.8E-11 92.2 8.7 195 155-360 14-237 (354)
180 3pfi_A Holliday junction ATP-d 98.2 2.4E-05 8.1E-10 83.9 16.0 171 155-359 29-226 (338)
181 3uk6_A RUVB-like 2; hexameric 98.1 3.9E-05 1.3E-09 83.3 16.7 195 155-358 44-301 (368)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.1 7.8E-05 2.7E-09 76.5 17.4 179 155-358 6-220 (262)
183 3d8b_A Fidgetin-like protein 1 98.1 6.9E-05 2.3E-09 80.6 17.5 179 155-360 84-295 (357)
184 1a5t_A Delta prime, HOLB; zinc 98.1 5.2E-05 1.8E-09 80.8 16.3 170 161-359 8-204 (334)
185 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00018 6.1E-09 76.1 19.9 180 155-360 12-223 (322)
186 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 81.8 3.0 86 751-843 62-154 (176)
187 4gt6_A Cell surface protein; l 98.0 0.00022 7.7E-09 78.0 20.4 259 516-814 65-367 (394)
188 3eie_A Vacuolar protein sortin 98.0 0.0001 3.4E-09 78.2 16.8 179 155-360 18-228 (322)
189 1l8q_A Chromosomal replication 98.0 3.5E-05 1.2E-09 81.9 13.2 167 163-355 22-203 (324)
190 3b9p_A CG5977-PA, isoform A; A 98.0 0.00015 5E-09 76.0 17.7 177 155-360 21-233 (297)
191 1sxj_C Activator 1 40 kDa subu 98.0 3.6E-05 1.2E-09 82.5 12.8 176 155-356 25-208 (340)
192 3cf0_A Transitional endoplasmi 98.0 0.00013 4.6E-09 76.3 16.7 174 155-355 15-223 (301)
193 2qp9_X Vacuolar protein sortin 98.0 9.7E-05 3.3E-09 79.3 15.6 177 155-360 51-261 (355)
194 3u61_B DNA polymerase accessor 98.0 4.1E-05 1.4E-09 81.4 12.6 174 155-356 26-212 (324)
195 2ra8_A Uncharacterized protein 98.0 5.2E-06 1.8E-10 89.1 5.5 62 714-783 250-317 (362)
196 3rw6_A Nuclear RNA export fact 97.9 3.4E-06 1.1E-10 85.7 3.5 83 558-642 166-259 (267)
197 2zan_A Vacuolar protein sortin 97.9 0.00026 8.9E-09 78.4 19.1 180 155-360 134-345 (444)
198 3e4g_A ATP synthase subunit S, 97.9 3.2E-06 1.1E-10 79.4 3.0 65 749-819 84-154 (176)
199 2p65_A Hypothetical protein PF 97.9 2.6E-05 9E-10 75.2 9.6 46 155-200 22-67 (187)
200 3vfd_A Spastin; ATPase, microt 97.9 0.00038 1.3E-08 75.8 19.5 179 155-360 115-326 (389)
201 2gno_A DNA polymerase III, gam 97.8 7.5E-05 2.5E-09 77.9 11.3 147 159-327 1-152 (305)
202 4b4t_J 26S protease regulatory 97.8 0.0004 1.4E-08 74.1 16.6 171 155-353 148-354 (405)
203 3pxg_A Negative regulator of g 97.8 0.00019 6.5E-09 80.1 14.2 149 155-328 180-339 (468)
204 1io0_A Tropomodulin; LRR prote 97.8 2.2E-05 7.5E-10 75.8 5.4 84 534-619 33-133 (185)
205 4h09_A Hypothetical leucine ri 97.7 0.00097 3.3E-08 72.4 18.9 285 515-835 46-340 (379)
206 2ra8_A Uncharacterized protein 97.7 3.3E-05 1.1E-09 82.9 6.7 137 534-678 169-320 (362)
207 1in4_A RUVB, holliday junction 97.7 0.00044 1.5E-08 73.5 15.0 169 155-358 25-221 (334)
208 3hu3_A Transitional endoplasmi 97.7 0.00044 1.5E-08 77.1 15.0 176 156-358 205-413 (489)
209 4b4t_H 26S protease regulatory 97.6 0.0006 2E-08 73.8 15.1 171 156-353 210-415 (467)
210 3n70_A Transport activator; si 97.6 5.4E-05 1.8E-09 69.7 5.9 45 156-200 2-48 (145)
211 4b4t_L 26S protease subunit RP 97.6 0.00069 2.4E-08 73.6 15.2 172 155-353 181-387 (437)
212 4b4t_K 26S protease regulatory 97.6 0.00082 2.8E-08 72.9 15.7 172 155-353 172-379 (428)
213 1io0_A Tropomodulin; LRR prote 97.6 2.4E-05 8.2E-10 75.5 3.4 118 556-678 30-164 (185)
214 4h09_A Hypothetical leucine ri 97.6 0.0032 1.1E-07 68.3 20.6 274 531-845 40-339 (379)
215 1lv7_A FTSH; alpha/beta domain 97.6 0.0012 4.2E-08 67.2 15.8 176 155-357 12-222 (257)
216 3rw6_A Nuclear RNA export fact 97.5 7.6E-05 2.6E-09 75.7 6.0 78 536-616 169-258 (267)
217 1qvr_A CLPB protein; coiled co 97.5 0.00017 5.7E-09 87.1 10.0 154 155-327 170-345 (854)
218 3pxi_A Negative regulator of g 97.5 0.00085 2.9E-08 80.0 15.8 151 155-328 180-339 (758)
219 4b4t_M 26S protease regulatory 97.5 0.00088 3E-08 72.7 14.3 171 155-353 181-387 (434)
220 3ec2_A DNA replication protein 97.5 3.6E-05 1.2E-09 73.9 2.9 41 160-200 19-62 (180)
221 4b4t_I 26S protease regulatory 97.5 0.0015 5.3E-08 69.9 15.6 171 155-353 182-388 (437)
222 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00091 3.1E-08 79.9 14.9 154 155-327 186-362 (758)
223 1ofh_A ATP-dependent HSL prote 97.5 0.0009 3.1E-08 70.4 13.3 46 155-200 15-74 (310)
224 2r62_A Cell division protease 97.5 0.00015 5.2E-09 74.6 7.1 173 155-354 11-219 (268)
225 2kjq_A DNAA-related protein; s 97.3 3.5E-05 1.2E-09 71.1 0.1 55 156-216 19-73 (149)
226 2ce7_A Cell division protein F 97.3 0.0028 9.7E-08 69.9 15.2 172 155-353 16-221 (476)
227 2w58_A DNAI, primosome compone 97.3 0.00055 1.9E-08 66.9 8.5 114 162-296 36-158 (202)
228 3co5_A Putative two-component 97.2 9.5E-05 3.2E-09 67.8 1.9 45 156-200 5-51 (143)
229 2c9o_A RUVB-like 1; hexameric 97.2 0.0025 8.6E-08 70.9 13.6 46 155-200 37-87 (456)
230 4fcw_A Chaperone protein CLPB; 97.2 0.00061 2.1E-08 71.8 8.0 45 156-200 18-71 (311)
231 2bjv_A PSP operon transcriptio 97.2 0.0013 4.3E-08 67.5 9.9 45 156-200 7-53 (265)
232 3cf2_A TER ATPase, transitiona 97.0 0.0023 7.7E-08 75.0 11.3 172 156-354 205-408 (806)
233 1ojl_A Transcriptional regulat 97.0 0.0021 7.1E-08 67.2 9.5 46 155-200 2-49 (304)
234 3pxi_A Negative regulator of g 96.9 0.0016 5.6E-08 77.5 8.8 60 155-217 491-559 (758)
235 2x8a_A Nuclear valosin-contain 96.8 0.034 1.2E-06 56.8 16.7 150 155-328 10-192 (274)
236 1iy2_A ATP-dependent metallopr 96.8 0.03 1E-06 57.5 16.5 171 155-353 40-245 (278)
237 1ixz_A ATP-dependent metallopr 96.8 0.04 1.4E-06 55.7 17.0 171 155-353 16-221 (254)
238 1ypw_A Transitional endoplasmi 96.6 0.0053 1.8E-07 73.1 10.2 172 155-353 204-407 (806)
239 3m6a_A ATP-dependent protease 96.6 0.011 3.7E-07 67.1 12.1 45 156-200 82-132 (543)
240 2dhr_A FTSH; AAA+ protein, hex 96.5 0.022 7.6E-07 63.2 14.0 168 155-353 31-236 (499)
241 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.002 6.9E-08 66.3 3.6 68 176-268 123-192 (331)
242 1n0w_A DNA repair protein RAD5 96.2 0.015 5E-07 58.4 9.8 91 175-267 23-128 (243)
243 2cvh_A DNA repair and recombin 96.2 0.011 3.6E-07 58.4 8.5 86 175-267 19-114 (220)
244 3hr8_A Protein RECA; alpha and 96.2 0.011 3.6E-07 62.6 8.4 86 175-268 60-149 (356)
245 1g5t_A COB(I)alamin adenosyltr 96.1 0.0034 1.2E-07 59.7 4.0 114 176-297 28-163 (196)
246 1jr3_D DNA polymerase III, del 96.0 0.041 1.4E-06 58.5 12.5 164 167-358 9-183 (343)
247 2z43_A DNA repair and recombin 96.0 0.025 8.6E-07 59.5 10.6 92 175-267 106-212 (324)
248 1r6b_X CLPA protein; AAA+, N-t 96.0 0.013 4.3E-07 69.9 8.9 46 155-200 458-512 (758)
249 3io5_A Recombination and repai 95.9 0.02 6.8E-07 58.7 8.9 86 177-268 29-121 (333)
250 2zr9_A Protein RECA, recombina 95.9 0.018 6E-07 61.1 8.9 86 175-268 60-149 (349)
251 3t15_A Ribulose bisphosphate c 95.9 0.012 4.1E-07 61.0 7.4 26 175-200 35-60 (293)
252 1v5w_A DMC1, meiotic recombina 95.9 0.033 1.1E-06 59.0 10.8 58 175-234 121-182 (343)
253 1u94_A RECA protein, recombina 95.8 0.019 6.5E-07 60.9 8.5 85 175-267 62-150 (356)
254 1xp8_A RECA protein, recombina 95.8 0.022 7.5E-07 60.6 8.9 85 175-267 73-161 (366)
255 2b8t_A Thymidine kinase; deoxy 95.7 0.0047 1.6E-07 60.7 3.2 113 175-297 11-126 (223)
256 2qgz_A Helicase loader, putati 95.7 0.012 4.1E-07 61.4 6.4 41 160-200 133-176 (308)
257 1rz3_A Hypothetical protein rb 95.7 0.012 3.9E-07 57.3 5.7 42 159-200 2-46 (201)
258 1qvr_A CLPB protein; coiled co 95.6 0.018 6E-07 69.5 8.1 45 156-200 559-612 (854)
259 3ice_A Transcription terminati 95.5 0.0088 3E-07 62.8 4.3 53 166-219 163-216 (422)
260 3rfe_A Platelet glycoprotein I 95.3 0.018 6E-07 51.3 5.1 51 566-619 12-65 (130)
261 3dm5_A SRP54, signal recogniti 95.2 0.079 2.7E-06 57.5 10.9 26 175-200 99-124 (443)
262 2i1q_A DNA repair and recombin 95.2 0.04 1.4E-06 57.9 8.6 92 175-267 97-213 (322)
263 3c8u_A Fructokinase; YP_612366 95.2 0.016 5.5E-07 56.6 5.0 39 162-200 6-46 (208)
264 2ck3_D ATP synthase subunit be 95.1 0.088 3E-06 57.1 10.6 64 166-231 142-207 (482)
265 2w0m_A SSO2452; RECA, SSPF, un 95.1 0.051 1.8E-06 53.9 8.4 48 175-227 22-69 (235)
266 3lda_A DNA repair protein RAD5 95.0 0.1 3.4E-06 56.2 10.7 60 175-235 177-239 (400)
267 4a74_A DNA repair and recombin 94.9 0.095 3.2E-06 51.8 9.9 59 175-234 24-85 (231)
268 1sky_E F1-ATPase, F1-ATP synth 94.8 0.063 2.2E-06 58.4 8.7 61 168-230 142-204 (473)
269 1pzn_A RAD51, DNA repair and r 94.8 0.064 2.2E-06 56.9 8.6 93 175-268 130-241 (349)
270 1qhx_A CPT, protein (chloramph 94.8 0.017 5.7E-07 54.8 3.6 24 177-200 4-27 (178)
271 3kb2_A SPBC2 prophage-derived 94.7 0.018 6.1E-07 54.2 3.6 24 177-200 2-25 (173)
272 2px0_A Flagellar biosynthesis 94.7 0.093 3.2E-06 54.1 9.2 87 175-267 104-191 (296)
273 2r44_A Uncharacterized protein 94.6 0.02 7E-07 60.5 4.3 44 155-200 27-70 (331)
274 2hf9_A Probable hydrogenase ni 94.6 0.034 1.2E-06 55.0 5.5 40 161-200 23-62 (226)
275 3rfe_A Platelet glycoprotein I 94.6 0.037 1.3E-06 49.2 5.1 57 589-648 11-69 (130)
276 3lw7_A Adenylate kinase relate 94.5 0.02 6.9E-07 54.0 3.5 23 177-200 2-24 (179)
277 3vaa_A Shikimate kinase, SK; s 94.5 0.022 7.7E-07 55.1 3.9 26 175-200 24-49 (199)
278 1fx0_B ATP synthase beta chain 94.5 0.11 3.9E-06 56.5 9.5 100 167-268 155-276 (498)
279 3kl4_A SRP54, signal recogniti 94.4 0.17 5.6E-06 54.9 10.8 26 175-200 96-121 (433)
280 2ga8_A Hypothetical 39.9 kDa p 94.4 0.044 1.5E-06 57.3 6.0 43 158-200 2-48 (359)
281 3bh0_A DNAB-like replicative h 94.3 0.12 4E-06 54.1 9.1 52 175-231 67-118 (315)
282 3trf_A Shikimate kinase, SK; a 94.3 0.025 8.6E-07 53.9 3.7 25 176-200 5-29 (185)
283 1kag_A SKI, shikimate kinase I 94.3 0.021 7.3E-07 53.7 3.1 24 177-200 5-28 (173)
284 1kgd_A CASK, peripheral plasma 94.2 0.025 8.5E-07 53.7 3.5 25 176-200 5-29 (180)
285 2xxa_A Signal recognition part 94.2 0.19 6.6E-06 54.7 11.0 26 175-200 99-124 (433)
286 1zp6_A Hypothetical protein AT 94.2 0.023 7.7E-07 54.6 3.2 26 175-200 8-33 (191)
287 2orw_A Thymidine kinase; TMTK, 94.2 0.006 2E-07 58.3 -1.0 24 177-200 4-27 (184)
288 3uie_A Adenylyl-sulfate kinase 94.2 0.031 1.1E-06 54.1 4.2 28 173-200 22-49 (200)
289 2wsm_A Hydrogenase expression/ 94.2 0.035 1.2E-06 54.6 4.6 43 158-200 12-54 (221)
290 3hws_A ATP-dependent CLP prote 94.2 0.043 1.5E-06 58.8 5.6 45 156-200 16-75 (363)
291 1odf_A YGR205W, hypothetical 3 94.1 0.047 1.6E-06 56.1 5.5 26 175-200 30-55 (290)
292 1um8_A ATP-dependent CLP prote 94.1 0.047 1.6E-06 58.9 5.8 45 156-200 22-96 (376)
293 1j8m_F SRP54, signal recogniti 94.1 0.15 5.2E-06 52.5 9.3 89 176-267 98-189 (297)
294 3e70_C DPA, signal recognition 94.1 0.23 8E-06 51.8 10.8 27 174-200 127-153 (328)
295 1ly1_A Polynucleotide kinase; 94.1 0.028 9.7E-07 53.2 3.5 22 177-198 3-24 (181)
296 3nbx_X ATPase RAVA; AAA+ ATPas 94.0 0.035 1.2E-06 61.7 4.6 43 156-200 23-65 (500)
297 2dr3_A UPF0273 protein PH0284; 94.0 0.1 3.4E-06 52.2 7.6 40 175-217 22-61 (247)
298 3t61_A Gluconokinase; PSI-biol 93.9 0.027 9.1E-07 54.7 3.1 25 176-200 18-42 (202)
299 3cf2_A TER ATPase, transitiona 93.9 0.1 3.5E-06 61.1 8.4 170 155-352 477-682 (806)
300 1g8p_A Magnesium-chelatase 38 93.9 0.023 7.9E-07 60.6 2.8 46 155-200 24-69 (350)
301 1vma_A Cell division protein F 93.9 0.13 4.4E-06 53.2 8.3 89 175-267 103-195 (306)
302 3iij_A Coilin-interacting nucl 93.9 0.031 1.1E-06 53.1 3.3 25 176-200 11-35 (180)
303 4eun_A Thermoresistant glucoki 93.9 0.037 1.3E-06 53.6 3.9 27 174-200 27-53 (200)
304 1nks_A Adenylate kinase; therm 93.8 0.033 1.1E-06 53.4 3.6 24 177-200 2-25 (194)
305 2yvu_A Probable adenylyl-sulfa 93.8 0.037 1.3E-06 52.8 3.8 26 175-200 12-37 (186)
306 1pgv_A TMD-1, tropomodulin TMD 93.8 0.056 1.9E-06 51.5 4.9 60 560-619 39-108 (197)
307 1zuh_A Shikimate kinase; alpha 93.8 0.036 1.2E-06 51.8 3.6 26 175-200 6-31 (168)
308 1kht_A Adenylate kinase; phosp 93.8 0.035 1.2E-06 53.1 3.6 24 177-200 4-27 (192)
309 2rhm_A Putative kinase; P-loop 93.8 0.038 1.3E-06 53.0 3.8 25 176-200 5-29 (193)
310 1knq_A Gluconate kinase; ALFA/ 93.7 0.038 1.3E-06 52.1 3.6 25 176-200 8-32 (175)
311 1via_A Shikimate kinase; struc 93.7 0.032 1.1E-06 52.7 3.1 24 177-200 5-28 (175)
312 3jvv_A Twitching mobility prot 93.7 0.036 1.2E-06 58.7 3.7 114 174-300 121-234 (356)
313 1ye8_A Protein THEP1, hypothet 93.6 0.039 1.3E-06 52.2 3.5 23 178-200 2-24 (178)
314 2jaq_A Deoxyguanosine kinase; 93.6 0.039 1.3E-06 53.5 3.6 23 178-200 2-24 (205)
315 3tr0_A Guanylate kinase, GMP k 93.6 0.037 1.3E-06 53.7 3.5 25 176-200 7-31 (205)
316 2bbw_A Adenylate kinase 4, AK4 93.6 0.042 1.4E-06 55.2 3.9 26 175-200 26-51 (246)
317 2qor_A Guanylate kinase; phosp 93.6 0.036 1.2E-06 53.9 3.3 26 175-200 11-36 (204)
318 1ex7_A Guanylate kinase; subst 93.6 0.029 9.8E-07 53.3 2.4 24 177-200 2-25 (186)
319 1gvn_B Zeta; postsegregational 93.6 0.065 2.2E-06 55.1 5.4 26 175-200 32-57 (287)
320 2ze6_A Isopentenyl transferase 93.5 0.039 1.3E-06 55.6 3.6 24 177-200 2-25 (253)
321 3fwy_A Light-independent proto 93.5 0.039 1.3E-06 57.4 3.6 41 174-217 46-86 (314)
322 1y63_A LMAJ004144AAA protein; 93.5 0.046 1.6E-06 52.1 3.9 25 175-199 9-33 (184)
323 3a00_A Guanylate kinase, GMP k 93.5 0.034 1.2E-06 53.1 2.9 24 177-200 2-25 (186)
324 2ffh_A Protein (FFH); SRP54, s 93.5 0.19 6.3E-06 54.4 8.9 26 175-200 97-122 (425)
325 2bdt_A BH3686; alpha-beta prot 93.5 0.041 1.4E-06 52.6 3.5 23 177-199 3-25 (189)
326 2c95_A Adenylate kinase 1; tra 93.5 0.047 1.6E-06 52.5 3.8 26 175-200 8-33 (196)
327 1cke_A CK, MSSA, protein (cyti 93.4 0.044 1.5E-06 54.2 3.6 24 177-200 6-29 (227)
328 3tau_A Guanylate kinase, GMP k 93.4 0.047 1.6E-06 53.2 3.7 26 175-200 7-32 (208)
329 2iyv_A Shikimate kinase, SK; t 93.4 0.036 1.2E-06 52.8 2.8 24 177-200 3-26 (184)
330 2if2_A Dephospho-COA kinase; a 93.3 0.043 1.5E-06 53.2 3.5 22 177-198 2-23 (204)
331 3asz_A Uridine kinase; cytidin 93.3 0.047 1.6E-06 53.3 3.7 26 175-200 5-30 (211)
332 2j41_A Guanylate kinase; GMP, 93.3 0.049 1.7E-06 52.9 3.8 25 176-200 6-30 (207)
333 1tev_A UMP-CMP kinase; ploop, 93.3 0.049 1.7E-06 52.3 3.7 25 176-200 3-27 (196)
334 4gp7_A Metallophosphoesterase; 93.3 0.036 1.2E-06 52.1 2.6 22 175-196 8-29 (171)
335 3tqc_A Pantothenate kinase; bi 93.3 0.08 2.7E-06 55.0 5.4 43 158-200 70-116 (321)
336 1e6c_A Shikimate kinase; phosp 93.2 0.043 1.5E-06 51.6 3.0 24 177-200 3-26 (173)
337 1ukz_A Uridylate kinase; trans 93.2 0.055 1.9E-06 52.4 3.8 26 175-200 14-39 (203)
338 3cm0_A Adenylate kinase; ATP-b 93.2 0.052 1.8E-06 51.7 3.6 24 177-200 5-28 (186)
339 1lvg_A Guanylate kinase, GMP k 93.1 0.042 1.4E-06 53.1 2.9 25 176-200 4-28 (198)
340 2bwj_A Adenylate kinase 5; pho 93.1 0.054 1.9E-06 52.2 3.7 25 176-200 12-36 (199)
341 1xjc_A MOBB protein homolog; s 93.1 0.06 2.1E-06 50.0 3.7 26 175-200 3-28 (169)
342 1uf9_A TT1252 protein; P-loop, 93.1 0.058 2E-06 52.2 3.9 25 175-199 7-31 (203)
343 3umf_A Adenylate kinase; rossm 93.1 0.058 2E-06 52.6 3.8 26 175-200 28-53 (217)
344 3ney_A 55 kDa erythrocyte memb 93.0 0.061 2.1E-06 51.5 3.8 26 175-200 18-43 (197)
345 1jjv_A Dephospho-COA kinase; P 93.0 0.049 1.7E-06 52.9 3.3 22 177-198 3-24 (206)
346 3cmu_A Protein RECA, recombina 93.0 0.17 5.8E-06 64.8 8.8 86 175-268 1426-1515(2050)
347 2qt1_A Nicotinamide riboside k 93.0 0.056 1.9E-06 52.6 3.7 26 175-200 20-45 (207)
348 2pt5_A Shikimate kinase, SK; a 93.0 0.058 2E-06 50.3 3.6 23 178-200 2-24 (168)
349 1g41_A Heat shock protein HSLU 93.0 0.07 2.4E-06 58.0 4.6 46 155-200 15-74 (444)
350 2p5t_B PEZT; postsegregational 93.0 0.073 2.5E-06 53.7 4.5 26 175-200 31-56 (253)
351 2plr_A DTMP kinase, probable t 92.9 0.061 2.1E-06 52.4 3.9 24 177-200 5-28 (213)
352 2vli_A Antibiotic resistance p 92.9 0.042 1.4E-06 52.2 2.5 25 176-200 5-29 (183)
353 2grj_A Dephospho-COA kinase; T 92.9 0.06 2.1E-06 51.5 3.6 26 175-200 11-36 (192)
354 1znw_A Guanylate kinase, GMP k 92.9 0.057 2E-06 52.5 3.5 26 175-200 19-44 (207)
355 3tlx_A Adenylate kinase 2; str 92.8 0.11 3.8E-06 51.9 5.6 42 159-200 10-53 (243)
356 2cdn_A Adenylate kinase; phosp 92.8 0.062 2.1E-06 52.0 3.6 26 175-200 19-44 (201)
357 1qf9_A UMP/CMP kinase, protein 92.8 0.062 2.1E-06 51.5 3.6 25 176-200 6-30 (194)
358 2pbr_A DTMP kinase, thymidylat 92.8 0.064 2.2E-06 51.4 3.7 23 178-200 2-24 (195)
359 1htw_A HI0065; nucleotide-bind 92.8 0.065 2.2E-06 49.4 3.5 27 174-200 31-57 (158)
360 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.066 2.3E-06 54.2 3.9 25 176-200 4-28 (260)
361 4e22_A Cytidylate kinase; P-lo 92.7 0.063 2.1E-06 54.1 3.6 26 175-200 26-51 (252)
362 3vr4_D V-type sodium ATPase su 92.7 0.16 5.3E-06 54.8 6.7 90 176-268 151-258 (465)
363 2wwf_A Thymidilate kinase, put 92.6 0.073 2.5E-06 51.9 3.9 32 176-209 10-41 (212)
364 1z6g_A Guanylate kinase; struc 92.6 0.056 1.9E-06 53.1 3.0 26 175-200 22-47 (218)
365 3aez_A Pantothenate kinase; tr 92.6 0.072 2.5E-06 55.4 3.9 27 174-200 88-114 (312)
366 1zd8_A GTP:AMP phosphotransfer 92.5 0.072 2.5E-06 52.7 3.7 25 176-200 7-31 (227)
367 1nn5_A Similar to deoxythymidy 92.5 0.077 2.6E-06 51.8 3.9 25 176-200 9-33 (215)
368 1aky_A Adenylate kinase; ATP:A 92.5 0.078 2.7E-06 52.1 3.9 25 176-200 4-28 (220)
369 2jeo_A Uridine-cytidine kinase 92.4 0.08 2.8E-06 53.1 3.9 26 175-200 24-49 (245)
370 1uj2_A Uridine-cytidine kinase 92.4 0.081 2.8E-06 53.3 3.9 26 175-200 21-46 (252)
371 1ls1_A Signal recognition part 92.4 0.3 1E-05 50.3 8.3 26 175-200 97-122 (295)
372 4a1f_A DNAB helicase, replicat 92.3 0.31 1.1E-05 50.9 8.4 52 175-231 45-96 (338)
373 2j37_W Signal recognition part 92.3 0.65 2.2E-05 51.4 11.4 26 175-200 100-125 (504)
374 1gtv_A TMK, thymidylate kinase 92.3 0.046 1.6E-06 53.5 1.9 24 177-200 1-24 (214)
375 3fb4_A Adenylate kinase; psych 92.3 0.078 2.7E-06 51.9 3.6 23 178-200 2-24 (216)
376 2z0h_A DTMP kinase, thymidylat 92.2 0.081 2.8E-06 50.8 3.6 23 178-200 2-24 (197)
377 1s96_A Guanylate kinase, GMP k 92.2 0.079 2.7E-06 51.9 3.5 26 175-200 15-40 (219)
378 2f1r_A Molybdopterin-guanine d 92.1 0.057 1.9E-06 50.6 2.2 24 177-200 3-26 (171)
379 1rj9_A FTSY, signal recognitio 92.1 0.089 3.1E-06 54.4 3.9 26 175-200 101-126 (304)
380 1zak_A Adenylate kinase; ATP:A 92.1 0.077 2.6E-06 52.2 3.3 25 176-200 5-29 (222)
381 3dl0_A Adenylate kinase; phosp 92.1 0.085 2.9E-06 51.7 3.6 23 178-200 2-24 (216)
382 3nwj_A ATSK2; P loop, shikimat 92.1 0.072 2.5E-06 53.3 3.1 25 176-200 48-72 (250)
383 2v54_A DTMP kinase, thymidylat 92.1 0.091 3.1E-06 50.8 3.8 25 176-200 4-28 (204)
384 1tue_A Replication protein E1; 92.0 0.17 5.7E-06 48.3 5.3 38 163-200 44-82 (212)
385 2i3b_A HCR-ntpase, human cance 92.0 0.074 2.5E-06 50.7 3.0 24 177-200 2-25 (189)
386 3l0o_A Transcription terminati 92.0 0.57 1.9E-05 49.3 9.6 52 166-218 164-216 (427)
387 2pez_A Bifunctional 3'-phospho 91.9 0.1 3.4E-06 49.4 3.7 25 176-200 5-29 (179)
388 3r20_A Cytidylate kinase; stru 91.8 0.096 3.3E-06 51.6 3.6 25 176-200 9-33 (233)
389 1m7g_A Adenylylsulfate kinase; 91.8 0.096 3.3E-06 51.1 3.6 27 174-200 23-49 (211)
390 1pgv_A TMD-1, tropomodulin TMD 91.8 0.12 4.2E-06 49.2 4.2 84 535-619 39-136 (197)
391 2onk_A Molybdate/tungstate ABC 91.7 0.1 3.5E-06 52.0 3.6 26 174-200 23-48 (240)
392 3k1j_A LON protease, ATP-depen 91.7 0.13 4.4E-06 59.2 5.0 43 156-200 42-84 (604)
393 1vht_A Dephospho-COA kinase; s 91.6 0.11 3.7E-06 50.9 3.8 23 176-198 4-26 (218)
394 3ake_A Cytidylate kinase; CMP 91.6 0.11 3.6E-06 50.5 3.6 24 177-200 3-26 (208)
395 3oaa_A ATP synthase subunit al 91.6 0.69 2.3E-05 50.3 10.1 98 167-268 152-264 (513)
396 1np6_A Molybdopterin-guanine d 91.5 0.12 4.1E-06 48.5 3.7 26 175-200 5-30 (174)
397 2q6t_A DNAB replication FORK h 91.5 0.34 1.2E-05 53.3 8.0 52 175-230 199-250 (444)
398 3p32_A Probable GTPase RV1496/ 91.4 0.21 7.3E-06 53.0 6.1 37 164-200 65-103 (355)
399 3sr0_A Adenylate kinase; phosp 91.4 0.11 3.9E-06 50.2 3.6 23 178-200 2-24 (206)
400 3end_A Light-independent proto 91.4 0.16 5.6E-06 52.8 5.1 44 173-219 38-81 (307)
401 2ehv_A Hypothetical protein PH 91.4 0.1 3.5E-06 52.4 3.4 24 175-198 29-52 (251)
402 3d3q_A TRNA delta(2)-isopenten 91.3 0.11 3.9E-06 54.0 3.7 24 177-200 8-31 (340)
403 2pcj_A ABC transporter, lipopr 91.3 0.091 3.1E-06 51.7 2.8 26 175-200 29-54 (224)
404 3be4_A Adenylate kinase; malar 91.3 0.12 3.9E-06 50.8 3.5 24 177-200 6-29 (217)
405 1sq5_A Pantothenate kinase; P- 91.3 0.21 7.2E-06 51.9 5.7 26 175-200 79-104 (308)
406 3tif_A Uncharacterized ABC tra 91.2 0.11 3.6E-06 51.7 3.2 26 175-200 30-55 (235)
407 2f6r_A COA synthase, bifunctio 91.2 0.11 3.9E-06 53.1 3.5 24 175-198 74-97 (281)
408 2yhs_A FTSY, cell division pro 91.2 0.21 7.3E-06 54.7 5.8 26 175-200 292-317 (503)
409 2xb4_A Adenylate kinase; ATP-b 91.2 0.12 4.1E-06 50.9 3.6 23 178-200 2-24 (223)
410 3b9q_A Chloroplast SRP recepto 91.2 0.12 4.3E-06 53.3 3.8 26 175-200 99-124 (302)
411 3lnc_A Guanylate kinase, GMP k 91.1 0.077 2.6E-06 52.6 2.1 26 175-200 26-52 (231)
412 1e4v_A Adenylate kinase; trans 91.1 0.12 4.2E-06 50.4 3.6 23 178-200 2-24 (214)
413 1ak2_A Adenylate kinase isoenz 91.1 0.14 4.7E-06 50.9 3.9 25 176-200 16-40 (233)
414 3bgw_A DNAB-like replicative h 91.0 0.56 1.9E-05 51.3 9.1 51 175-230 196-246 (444)
415 3b85_A Phosphate starvation-in 90.9 0.09 3.1E-06 51.0 2.3 24 176-199 22-45 (208)
416 3gqb_B V-type ATP synthase bet 90.8 0.27 9.2E-06 53.0 6.0 93 175-268 146-261 (464)
417 2cbz_A Multidrug resistance-as 90.8 0.11 3.8E-06 51.6 2.9 26 175-200 30-55 (237)
418 2qe7_A ATP synthase subunit al 90.8 0.3 1E-05 53.3 6.4 97 167-268 152-264 (502)
419 3crm_A TRNA delta(2)-isopenten 90.8 0.14 4.7E-06 53.1 3.6 24 177-200 6-29 (323)
420 2d2e_A SUFC protein; ABC-ATPas 90.7 0.13 4.6E-06 51.5 3.4 25 175-199 28-52 (250)
421 3j16_B RLI1P; ribosome recycli 90.7 0.53 1.8E-05 53.6 8.6 133 177-309 104-293 (608)
422 1q57_A DNA primase/helicase; d 90.7 0.58 2E-05 52.4 9.0 53 175-231 241-293 (503)
423 1b0u_A Histidine permease; ABC 90.6 0.11 3.9E-06 52.4 2.8 26 175-200 31-56 (262)
424 3gfo_A Cobalt import ATP-bindi 90.6 0.11 3.9E-06 52.7 2.8 26 175-200 33-58 (275)
425 3hjn_A DTMP kinase, thymidylat 90.5 0.45 1.5E-05 45.6 6.8 23 178-200 2-24 (197)
426 2c61_A A-type ATP synthase non 90.5 0.29 1E-05 53.1 6.0 101 167-267 142-258 (469)
427 1ji0_A ABC transporter; ATP bi 90.5 0.12 4.2E-06 51.4 2.9 26 175-200 31-56 (240)
428 4g1u_C Hemin import ATP-bindin 90.4 0.12 4.2E-06 52.3 2.9 26 175-200 36-61 (266)
429 1sgw_A Putative ABC transporte 90.4 0.1 3.6E-06 50.8 2.3 26 175-200 34-59 (214)
430 1oix_A RAS-related protein RAB 90.4 0.15 5.2E-06 48.7 3.4 25 176-200 29-53 (191)
431 2olj_A Amino acid ABC transpor 90.4 0.12 4.2E-06 52.1 2.8 26 175-200 49-74 (263)
432 2zu0_C Probable ATP-dependent 90.4 0.14 4.9E-06 51.8 3.4 25 175-199 45-69 (267)
433 2pze_A Cystic fibrosis transme 90.4 0.13 4.3E-06 50.9 2.8 26 175-200 33-58 (229)
434 1g6h_A High-affinity branched- 90.4 0.13 4.3E-06 52.0 2.9 26 175-200 32-57 (257)
435 3mfy_A V-type ATP synthase alp 90.4 0.58 2E-05 51.5 8.2 57 167-228 217-275 (588)
436 3cmu_A Protein RECA, recombina 90.3 0.51 1.8E-05 60.5 8.8 86 175-268 382-471 (2050)
437 4eaq_A DTMP kinase, thymidylat 90.3 0.27 9.2E-06 48.5 5.2 26 175-200 25-50 (229)
438 3exa_A TRNA delta(2)-isopenten 90.3 0.16 5.5E-06 52.0 3.5 25 176-200 3-27 (322)
439 3a8t_A Adenylate isopentenyltr 90.3 0.15 5E-06 53.0 3.3 25 176-200 40-64 (339)
440 2ff7_A Alpha-hemolysin translo 90.3 0.13 4.5E-06 51.4 2.9 26 175-200 34-59 (247)
441 2og2_A Putative signal recogni 90.2 0.17 5.8E-06 53.5 3.8 26 175-200 156-181 (359)
442 2v9p_A Replication protein E1; 90.2 0.16 5.5E-06 52.2 3.5 27 174-200 124-150 (305)
443 1mv5_A LMRA, multidrug resista 90.1 0.14 4.6E-06 51.2 2.8 26 175-200 27-52 (243)
444 1vpl_A ABC transporter, ATP-bi 90.1 0.14 4.7E-06 51.5 2.8 26 175-200 40-65 (256)
445 1g8f_A Sulfate adenylyltransfe 90.0 0.24 8.3E-06 54.8 5.0 44 157-200 374-419 (511)
446 2r6a_A DNAB helicase, replicat 90.0 0.44 1.5E-05 52.5 7.2 51 175-229 202-252 (454)
447 1yrb_A ATP(GTP)binding protein 90.0 0.19 6.5E-06 50.8 3.9 26 175-200 13-38 (262)
448 3cmw_A Protein RECA, recombina 90.0 0.47 1.6E-05 60.1 8.0 86 175-268 382-471 (1706)
449 2ghi_A Transport protein; mult 89.9 0.14 4.9E-06 51.6 2.9 26 175-200 45-70 (260)
450 2ixe_A Antigen peptide transpo 89.9 0.14 4.9E-06 51.9 2.9 26 175-200 44-69 (271)
451 2eyu_A Twitching motility prot 89.9 0.18 6E-06 51.0 3.5 113 174-299 23-135 (261)
452 2qi9_C Vitamin B12 import ATP- 89.9 0.15 5E-06 51.1 2.8 26 175-200 25-50 (249)
453 1a7j_A Phosphoribulokinase; tr 89.7 0.1 3.4E-06 53.7 1.6 26 175-200 4-29 (290)
454 2wji_A Ferrous iron transport 89.7 0.17 5.9E-06 46.9 3.1 23 177-199 4-26 (165)
455 3io3_A DEHA2D07832P; chaperone 89.7 0.35 1.2E-05 50.9 5.8 48 171-219 13-60 (348)
456 2r9v_A ATP synthase subunit al 89.7 0.36 1.2E-05 52.7 5.9 97 167-268 165-277 (515)
457 2yz2_A Putative ABC transporte 89.7 0.15 5.2E-06 51.6 2.9 26 175-200 32-57 (266)
458 2f9l_A RAB11B, member RAS onco 89.7 0.18 6E-06 48.5 3.2 24 177-200 6-29 (199)
459 1zu4_A FTSY; GTPase, signal re 89.7 0.21 7.1E-06 52.0 4.0 26 175-200 104-129 (320)
460 3iqw_A Tail-anchored protein t 89.7 0.42 1.4E-05 50.0 6.3 47 171-220 11-57 (334)
461 2nq2_C Hypothetical ABC transp 89.7 0.15 5.3E-06 51.1 2.8 26 175-200 30-55 (253)
462 1q3t_A Cytidylate kinase; nucl 89.7 0.21 7.3E-06 49.6 3.9 26 175-200 15-40 (236)
463 1fx0_A ATP synthase alpha chai 89.7 0.39 1.3E-05 52.4 6.1 86 176-268 163-265 (507)
464 3lv8_A DTMP kinase, thymidylat 89.7 0.38 1.3E-05 47.5 5.6 36 176-213 27-62 (236)
465 1ltq_A Polynucleotide kinase; 89.7 0.18 6.1E-06 52.3 3.5 24 177-200 3-26 (301)
466 2dyk_A GTP-binding protein; GT 89.6 0.2 6.7E-06 46.0 3.4 24 177-200 2-25 (161)
467 3vr4_A V-type sodium ATPase ca 89.6 0.76 2.6E-05 50.8 8.4 58 166-228 221-280 (600)
468 2ihy_A ABC transporter, ATP-bi 89.6 0.16 5.3E-06 51.9 2.8 26 175-200 46-71 (279)
469 3sop_A Neuronal-specific septi 89.5 0.19 6.5E-06 51.0 3.4 23 178-200 4-26 (270)
470 3foz_A TRNA delta(2)-isopenten 89.5 0.21 7.3E-06 51.0 3.7 25 176-200 10-34 (316)
471 2ged_A SR-beta, signal recogni 89.5 0.36 1.2E-05 45.9 5.2 26 175-200 47-72 (193)
472 3cmw_A Protein RECA, recombina 89.4 0.53 1.8E-05 59.6 7.9 85 175-267 1430-1518(1706)
473 2r8r_A Sensor protein; KDPD, P 89.3 0.28 9.6E-06 47.7 4.2 37 178-217 8-44 (228)
474 1nlf_A Regulatory protein REPA 89.3 0.19 6.6E-06 51.4 3.3 26 175-200 29-54 (279)
475 1svm_A Large T antigen; AAA+ f 89.3 0.37 1.3E-05 51.3 5.5 27 174-200 167-193 (377)
476 2zej_A Dardarin, leucine-rich 89.2 0.15 5.1E-06 48.3 2.3 22 178-199 4-25 (184)
477 4tmk_A Protein (thymidylate ki 89.2 0.42 1.4E-05 46.4 5.5 52 177-230 4-55 (213)
478 3f9v_A Minichromosome maintena 89.2 0.11 3.8E-06 59.3 1.6 46 155-200 295-351 (595)
479 2ce2_X GTPase HRAS; signaling 89.1 0.2 6.9E-06 46.0 3.1 23 178-200 5-27 (166)
480 3zvl_A Bifunctional polynucleo 89.0 0.2 6.8E-06 54.6 3.4 27 174-200 256-282 (416)
481 3v9p_A DTMP kinase, thymidylat 89.0 0.28 9.6E-06 48.1 4.1 25 176-200 25-49 (227)
482 2qmh_A HPR kinase/phosphorylas 88.8 0.2 7E-06 47.4 2.8 25 176-200 34-58 (205)
483 1z2a_A RAS-related protein RAB 88.8 0.22 7.5E-06 46.0 3.1 24 177-200 6-29 (168)
484 2ocp_A DGK, deoxyguanosine kin 88.7 0.26 8.9E-06 49.1 3.8 25 176-200 2-26 (241)
485 1zj6_A ADP-ribosylation factor 88.7 0.38 1.3E-05 45.5 4.8 34 165-199 6-39 (187)
486 1cr0_A DNA primase/helicase; R 88.7 0.24 8.1E-06 51.2 3.6 26 175-200 34-59 (296)
487 2wjg_A FEOB, ferrous iron tran 88.7 0.23 8E-06 47.0 3.3 23 177-199 8-30 (188)
488 2pjz_A Hypothetical protein ST 88.7 0.2 6.9E-06 50.5 2.8 24 176-199 30-53 (263)
489 4edh_A DTMP kinase, thymidylat 88.6 0.54 1.8E-05 45.7 5.8 33 176-210 6-38 (213)
490 1p9r_A General secretion pathw 88.6 0.61 2.1E-05 50.4 6.8 28 173-200 164-191 (418)
491 2ck3_A ATP synthase subunit al 88.6 0.7 2.4E-05 50.5 7.2 102 167-268 152-272 (510)
492 3fvq_A Fe(3+) IONS import ATP- 88.6 0.23 7.8E-06 52.3 3.3 26 175-200 29-54 (359)
493 3kta_A Chromosome segregation 88.6 0.27 9.3E-06 46.4 3.6 25 176-200 26-50 (182)
494 3con_A GTPase NRAS; structural 88.5 0.23 7.9E-06 47.1 3.1 24 177-200 22-45 (190)
495 1tq4_A IIGP1, interferon-induc 88.4 0.32 1.1E-05 52.4 4.4 25 175-199 68-92 (413)
496 3cr8_A Sulfate adenylyltranfer 88.4 0.34 1.2E-05 54.5 4.8 26 175-200 368-393 (552)
497 1cp2_A CP2, nitrogenase iron p 88.4 0.43 1.5E-05 48.4 5.2 38 177-217 2-39 (269)
498 3nh6_A ATP-binding cassette SU 88.4 0.19 6.5E-06 51.8 2.5 26 175-200 79-104 (306)
499 2vp4_A Deoxynucleoside kinase; 88.4 0.19 6.5E-06 49.7 2.4 25 175-199 19-43 (230)
500 3tui_C Methionine import ATP-b 88.2 0.25 8.6E-06 52.1 3.3 26 175-200 53-78 (366)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-47 Score=442.84 Aligned_cols=312 Identities=13% Similarity=0.130 Sum_probs=250.9
Q ss_pred cccchHHHHHHHHHHHccC---CCcEEEEEcCCCCcHHHHHHHHHH--hhcCCCCCCCEEEEEEEcCcc--CHHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQE---PAGIVGLYGMGGVGKTTLMALINN--KFLGSPTNFDVVIWVVVSKDL--RLENIQEAI 228 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 228 (885)
..|||++++++|.++|..+ +.++|+|+||||+||||||+++|+ +. .+..+|++++||++++.+ +...+++.|
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 3359999999999999754 679999999999999999999998 34 568899999999999985 789999999
Q ss_pred HHHcCCCCc-----cccccchhHHHHHHHHHhccC-cEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhh
Q 039262 229 GEKIGLVND-----TWKNRRTEQKALDIFRNLKEK-KFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL 302 (885)
Q Consensus 229 ~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (885)
+.+++.... .....+...+...+++.|+++ ||||||||||+..++ . ++ ..+||+||||||+..++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~--~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WA--QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HH--HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----cc--ccCCCEEEEEcCCHHHHHH
Confidence 999976421 112234456688899999996 999999999997754 1 11 1269999999999999987
Q ss_pred cc-CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhc
Q 039262 303 ME-AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRT 381 (885)
Q Consensus 303 ~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~ 381 (885)
++ ....|+|++|+.+|||+||.+.++... .++++.+++++|+++|+|+||||+++|+.++.+ .|+.+ +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHH
Confidence 75 446799999999999999999987653 246788999999999999999999999999764 25443 34433
Q ss_pred cCCCCCCCCcchhhhHHhhhcCCChhhHHHHHH-----------HHhcCCCCcccchHHHHHHHHHc--CCccCcc-hhh
Q 039262 382 SSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLL-----------YCSLYPEDYRISKENLIDCWIGE--GFLNESV-NFG 447 (885)
Q Consensus 382 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~ 447 (885)
..+... ...+..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+.... ...
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 222111 24689999999999999 8999999 999999999999 8999999 9998743 445
Q ss_pred HHHHHHHHHHHHHHccccccc---cCCeEEehHHHHHHHHHHHhhc
Q 039262 448 VQKEGYHIVGTLVHACLLEEV---EEDEVQMHDVIRDMALWLACDV 490 (885)
Q Consensus 448 ~~~~~~~~l~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~~~~~ 490 (885)
.++.++ ||++|+++||++.. ....|+|||+||++|++++.+.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 666676 99999999999986 3467999999999999888654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=4.5e-39 Score=372.31 Aligned_cols=286 Identities=16% Similarity=0.214 Sum_probs=229.5
Q ss_pred CcccchHHHHHHHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCE-EEEEEEcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDV-VIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
+..|||++++++|.++|.+ ++.++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL 206 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999976 568999999999999999999999875 45678985 99999999999888888877754
Q ss_pred CCCC---c-cc-----cccchhHHHHHHHHHh---ccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHh
Q 039262 233 GLVN---D-TW-----KNRRTEQKALDIFRNL---KEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC 300 (885)
Q Consensus 233 ~~~~---~-~~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (885)
+... . .. ...+.++....+++.+ .++|+||||||||+...|+.+ ..||+||||||++.++
T Consensus 207 ~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------HSSCCEEEECSCSHHH
T ss_pred hhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------CCCeEEEEeccChHHH
Confidence 2110 0 00 0112344556677665 679999999999998888754 2589999999999998
Q ss_pred hhccCcceEEec------cCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCC-ChHHHH
Q 039262 301 GLMEAHKKFKVE------CLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKR-MPEEWS 373 (885)
Q Consensus 301 ~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~~~~w~ 373 (885)
..+.....|.++ +|+.+|||+||++.++... .++..+| |+|+||||.++|+.|+.+. +...|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~-------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCT-------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCH-------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 655444456677 9999999999999864321 1233343 9999999999999998763 667786
Q ss_pred HHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhH-HHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHH
Q 039262 374 YAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETI-RSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEG 452 (885)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 452 (885)
.. ....+..+|.+||+.||+ +. |.||++||+||+++.|+++.++.+|+++| ++.+
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedA 404 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDV 404 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHH
T ss_pred cC-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHH
Confidence 52 125799999999999999 78 99999999999999999999999999887 1357
Q ss_pred HHHHHHHHHccccccc-cCCeEEehHHHHHHH
Q 039262 453 YHIVGTLVHACLLEEV-EEDEVQMHDVIRDMA 483 (885)
Q Consensus 453 ~~~l~~L~~~sll~~~-~~~~~~mHdlv~d~a 483 (885)
..++++|+++||++.. ....|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 8899999999999986 467899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1e-36 Score=390.95 Aligned_cols=310 Identities=21% Similarity=0.253 Sum_probs=250.9
Q ss_pred CCcccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC-CCCEEEEEEEcCccC--HHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPT-NFDVVIWVVVSKDLR--LENIQEAI 228 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~--~~~~~~~i 228 (885)
.+.||||++++++|.+.|.. ++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45699999999999999963 57899999999999999999999988421234 456888999998543 44456777
Q ss_pred HHHcCCCCcc--ccccchhHHHHHHHHHhccC--cEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhh-c
Q 039262 229 GEKIGLVNDT--WKNRRTEQKALDIFRNLKEK--KFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL-M 303 (885)
Q Consensus 229 ~~~l~~~~~~--~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~-~ 303 (885)
+..+...... ....+.++....++..+.++ |+||||||||+...|..+ ++||+||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 7777643211 12345677888888889877 999999999998777643 568999999999999854 4
Q ss_pred cCcceEEecc-CChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHHhcc
Q 039262 304 EAHKKFKVEC-LSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVLRTS 382 (885)
Q Consensus 304 ~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 382 (885)
+....+.+.+ |+++||++||...++... ++..+++++|+++|+|+||||+++|++|+.+. ..|..+++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667899996 999999999999885433 33455799999999999999999999998644 5799999988765
Q ss_pred CCCC-C----CCCcchhhhHHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHHHHH
Q 039262 383 SSQF-P----GLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYHIVG 457 (885)
Q Consensus 383 ~~~~-~----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~ 457 (885)
.+.. . ...+.+..++.+||+.||+ +.|.||+|||+||+++.|+++.++.+|.++ .+.++++++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~ 416 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQ 416 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHH
Confidence 4321 1 1113689999999999999 899999999999999999999999999665 367889999
Q ss_pred HHHHccccccccCC---eEEehHHHHHHHHHHHhh
Q 039262 458 TLVHACLLEEVEED---EVQMHDVIRDMALWLACD 489 (885)
Q Consensus 458 ~L~~~sll~~~~~~---~~~mHdlv~d~a~~~~~~ 489 (885)
+|+++||++..... .|+||+++|++++..+.+
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 99999999976333 599999999999998665
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=338.89 Aligned_cols=305 Identities=21% Similarity=0.283 Sum_probs=236.7
Q ss_pred CCcccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCC-CCCC-CEEEEEEEcCccCHHHHHHH--
Q 039262 154 DATVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKFLGS-PTNF-DVVIWVVVSKDLRLENIQEA-- 227 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~~s~~~~~~~~~~~-- 227 (885)
++.||||++++++|.+.|.. ++.++|+|+||||+||||||++++++. .+ ..+| +.++|++++.. +...+...
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35699999999999999974 467899999999999999999999875 23 4678 58999999876 33333333
Q ss_pred -HHHHcCCCC--ccccccchhHHHHHHHHHhcc--CcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhhh
Q 039262 228 -IGEKIGLVN--DTWKNRRTEQKALDIFRNLKE--KKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL 302 (885)
Q Consensus 228 -i~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (885)
++..++... ......+.+.....++..+.+ +++||||||||+...+.. .+.|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~--------l~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA--------FDSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT--------TCSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH--------hcCCCeEEEECCCcHHHHh
Confidence 344554211 111234556677778888877 789999999998766543 2468999999999988766
Q ss_pred ccCcceEEe---ccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCCCChHHHHHHHHHH
Q 039262 303 MEAHKKFKV---ECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCKRMPEEWSYAIQVL 379 (885)
Q Consensus 303 ~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l 379 (885)
+. ...+++ ++|+.+|+++||...++... ....+.+.+|+++|+|+||||..+|+.++.. ...|..+++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~--~~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF--PNRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 43 344555 58999999999999987532 1223468999999999999999999999864 34799988888
Q ss_pred hccCCC-----CCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCCCCcccchHHHHHHHHHcCCccCcchhhHHHHHHH
Q 039262 380 RTSSSQ-----FPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYPEDYRISKENLIDCWIGEGFLNESVNFGVQKEGYH 454 (885)
Q Consensus 380 ~~~~~~-----~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 454 (885)
...... .......+..++..||+.||+ +.|.||++||+||+++.|+.+.+...|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 765321 111224789999999999999 899999999999999999999999999653 245778
Q ss_pred HHHHHHHccccccc---cCCeEEehHHHHHHHHHHH
Q 039262 455 IVGTLVHACLLEEV---EEDEVQMHDVIRDMALWLA 487 (885)
Q Consensus 455 ~l~~L~~~sll~~~---~~~~~~mHdlv~d~a~~~~ 487 (885)
++++|+++||++.. ....|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999999999865 2347999999999998773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.2e-24 Score=231.30 Aligned_cols=290 Identities=18% Similarity=0.203 Sum_probs=214.7
Q ss_pred CcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCC
Q 039262 510 DVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQ 589 (885)
Q Consensus 510 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (885)
....++++++|++.++.+..++.+..+++|++|++++| .+..++. +..+++|++|++++| .++.+| .+..+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCC
Confidence 34456788999999988888888888899999999988 6777766 788999999999998 788876 588899999
Q ss_pred EeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 590 HLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
+|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++.+|.... ...+..+++|+.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~---------~~~~~~l~~L~~ 181 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD---------VTPIANLTDLYS 181 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC---------CGGGGGCTTCSE
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC---------chhhccCCCCCE
Confidence 99999999888887 88889999999999876666665 7888999999988876543 222777888888
Q ss_pred EEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCccccc
Q 039262 670 LSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVF 749 (885)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (885)
|+++.+....+..+. ...+++.|.+.++. +...+ .+..+++|++|++++|.. ..+++ .. .+
T Consensus 182 L~l~~n~l~~~~~~~----~l~~L~~L~l~~n~-l~~~~--~~~~~~~L~~L~l~~n~l-~~~~~--~~---------~l 242 (347)
T 4fmz_A 182 LSLNYNQIEDISPLA----SLTSLHYFTAYVNQ-ITDIT--PVANMTRLNSLKIGNNKI-TDLSP--LA---------NL 242 (347)
T ss_dssp EECTTSCCCCCGGGG----GCTTCCEEECCSSC-CCCCG--GGGGCTTCCEEECCSSCC-CCCGG--GT---------TC
T ss_pred EEccCCccccccccc----CCCccceeecccCC-CCCCc--hhhcCCcCCEEEccCCcc-CCCcc--hh---------cC
Confidence 888888776555422 23577888887753 23332 366778888888888743 32221 21 47
Q ss_pred CcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCC
Q 039262 750 HSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPH 829 (885)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~ 829 (885)
++|++|++++| .++.++.+..+++|++|++++| .++.++ .+..+++|+.|++++|.-....+.....+|+
T Consensus 243 ~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 243 SQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp TTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh--------hhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 88888888886 6777777888888888888886 455542 3667888888888886533332233445788
Q ss_pred cceEEEccCCCCCCCCC
Q 039262 830 LKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 830 L~~L~i~~c~~L~~lp~ 846 (885)
|++|++++|+ ++.+|.
T Consensus 313 L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 313 LTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CSEEECCSSS-CCCCGG
T ss_pred CCEEEccCCc-cccccC
Confidence 8888888885 665543
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=6.1e-23 Score=223.94 Aligned_cols=298 Identities=17% Similarity=0.219 Sum_probs=239.3
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
..+...+..+..++....++++++|++.+|.+..++.+..+++|++|++++| .+..++. +..+++|++|++++| .+
T Consensus 47 ~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n-~i 122 (347)
T 4fmz_A 47 TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED-NI 122 (347)
T ss_dssp SEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS-CC
T ss_pred cEEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC-cc
Confidence 3455556666777777888999999999999999888899999999999999 6777753 899999999999999 88
Q ss_pred ccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccc
Q 039262 576 FYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIRE 655 (885)
Q Consensus 576 ~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 655 (885)
..+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++.+|.+..
T Consensus 123 ~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~------- 191 (347)
T 4fmz_A 123 SDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED------- 191 (347)
T ss_dssp CCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC-------
T ss_pred cCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc-------
Confidence 88886 89999999999999955444555999999999999999 5667775 7899999999999887653
Q ss_pred cchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEec
Q 039262 656 GELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMD 735 (885)
Q Consensus 656 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 735 (885)
+..+..+++|+.|+++.+.......+ ...++|+.|.+.++. +...+ .+..+++|++|++++|. +..+ .
T Consensus 192 --~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~L~~L~l~~n~-l~~~~--~~~~l~~L~~L~l~~n~-l~~~--~ 259 (347)
T 4fmz_A 192 --ISPLASLTSLHYFTAYVNQITDITPV----ANMTRLNSLKIGNNK-ITDLS--PLANLSQLTWLEIGTNQ-ISDI--N 259 (347)
T ss_dssp --CGGGGGCTTCCEEECCSSCCCCCGGG----GGCTTCCEEECCSSC-CCCCG--GGTTCTTCCEEECCSSC-CCCC--G
T ss_pred --cccccCCCccceeecccCCCCCCchh----hcCCcCCEEEccCCc-cCCCc--chhcCCCCCEEECCCCc-cCCC--h
Confidence 23378899999999999887665542 224689999998864 34443 37788999999999984 3332 2
Q ss_pred ccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcc
Q 039262 736 YTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 736 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
... .+++|++|++++| .++.++.+..+++|+.|++++|. +...+. ..+..+++|+.|++++|+
T Consensus 260 ~~~---------~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~------~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 260 AVK---------DLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ-LGNEDM------EVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp GGT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCGGGH------HHHHTCTTCSEEECCSSS
T ss_pred hHh---------cCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc-CCCcCh------hHhhccccCCEEEccCCc
Confidence 222 4889999999997 68888889999999999999974 444332 256789999999999976
Q ss_pred cccccCCCCCCCCCcceEEEccCC
Q 039262 816 NFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 816 ~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
+..++. ...+++|++|++.+|+
T Consensus 323 -l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG-GGGCTTCSEESSSCC-
T ss_pred -cccccC-hhhhhccceeehhhhc
Confidence 555433 5669999999999985
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=9.1e-23 Score=232.83 Aligned_cols=309 Identities=21% Similarity=0.235 Sum_probs=179.3
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+..+..+|. ...++++.|++.+|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN-R 91 (477)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC-c
Confidence 34444555555554 22457777888877777663 3567777888888777 666665556777788888888877 6
Q ss_pred cccCchh-HhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 575 LFYFPLV-ISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 575 i~~lp~~-i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
++.+|.. ++++++|++|+|++|.+..++ ..+..+++|++|++++| .+..+++..+..+++|++|++.+|.+...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 167 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNLTSI--- 167 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCCSSC---
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcCccc---
Confidence 7777654 577778888888887776664 56777778888888777 44555544477777888888777765431
Q ss_pred ccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceE
Q 039262 653 IREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEEL 732 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 732 (885)
....+..+++|+.|+++.+....+.... .....+|+.|.+.++.....++...+. ..+|++|++++|. +..+
T Consensus 168 ----~~~~l~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~-l~~~ 239 (477)
T 2id5_A 168 ----PTEALSHLHGLIVLRLRHLNINAIRDYS--FKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCN-LTAV 239 (477)
T ss_dssp ----CHHHHTTCTTCCEEEEESCCCCEECTTC--SCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSC-CCSC
T ss_pred ----ChhHhcccCCCcEEeCCCCcCcEeChhh--cccCcccceeeCCCCccccccCccccc-CccccEEECcCCc-cccc
Confidence 2345677777777777776654432211 111245556666555444444322222 2356666665552 2222
Q ss_pred EecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceee
Q 039262 733 KMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLG 810 (885)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~ 810 (885)
+..... .+++|+.|+|+++ .+..++ .+..+++|+.|+|++| .+..+.. ..+..+++|+.|+
T Consensus 240 ~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~------~~~~~l~~L~~L~ 302 (477)
T 2id5_A 240 PYLAVR---------HLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEP------YAFRGLNYLRVLN 302 (477)
T ss_dssp CHHHHT---------TCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECT------TTBTTCTTCCEEE
T ss_pred CHHHhc---------CccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceECH------HHhcCcccCCEEE
Confidence 222222 3556666666653 344443 2455566666666554 3333322 2345556666666
Q ss_pred cCCcccccccCCC-CCCCCCcceEEEccC
Q 039262 811 LSSLSNFQSIYWK-PLPFPHLKEMKVIHC 838 (885)
Q Consensus 811 L~~~~~l~~i~~~-~~~~p~L~~L~i~~c 838 (885)
|+++ .++.++.. ...+++|++|++.++
T Consensus 303 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 303 VSGN-QLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence 6653 34444332 234556666666554
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.8e-22 Score=230.44 Aligned_cols=307 Identities=17% Similarity=0.179 Sum_probs=236.8
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 596 (885)
+.+...++.+..+|.. -.+++++|++++| .+..+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-IPTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCC-CCCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 4566677777777752 2368999999999 788887777999999999999999 77765 778999999999999999
Q ss_pred Cccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 597 NVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 597 ~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
.+..+|.. +.++++|++|++++| .+..+++..+..+++|++|++.+|.+... ....+..+++|+.|+++.|
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n 162 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYI-------SHRAFSGLNSLEQLTLEKC 162 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEE-------CTTSSTTCTTCCEEEEESC
T ss_pred cCCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCcccee-------ChhhccCCCCCCEEECCCC
Confidence 99999864 789999999999999 45666555589999999999998876542 3445788999999999998
Q ss_pred ccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEE
Q 039262 676 NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKI 755 (885)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 755 (885)
....+..... ...++|+.|.+.++. +..++...+..+++|++|++++|..+..++..... ..+|++|
T Consensus 163 ~l~~~~~~~l--~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------~~~L~~L 229 (477)
T 2id5_A 163 NLTSIPTEAL--SHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY----------GLNLTSL 229 (477)
T ss_dssp CCSSCCHHHH--TTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT----------TCCCSEE
T ss_pred cCcccChhHh--cccCCCcEEeCCCCc-CcEeChhhcccCcccceeeCCCCccccccCccccc----------CccccEE
Confidence 8765543211 124689999998854 44455456888999999999998877765444332 4589999
Q ss_pred EeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCccccccc-CCCCCCCCCcce
Q 039262 756 QIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSI-YWKPLPFPHLKE 832 (885)
Q Consensus 756 ~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i-~~~~~~~p~L~~ 832 (885)
++++| .++.+| .+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|+++ .+..+ +.....+++|+.
T Consensus 230 ~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 230 SITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp EEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCE
T ss_pred ECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh------hhccccccCCEEECCCC-ccceECHHHhcCcccCCE
Confidence 99996 688887 47899999999999864 666544 35778999999999985 44444 445567899999
Q ss_pred EEEccCCCCCCCCCCCCccccceEEE
Q 039262 833 MKVIHCNKLKKLPLDSNSAKERKIVI 858 (885)
Q Consensus 833 L~i~~c~~L~~lp~~~~~~~~~l~~i 858 (885)
|++++| +++.+|.........+..+
T Consensus 301 L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 301 LNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp EECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred EECCCC-cCceeCHhHcCCCcccCEE
Confidence 999988 7888887544333333433
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=2.7e-22 Score=227.55 Aligned_cols=337 Identities=18% Similarity=0.160 Sum_probs=230.0
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
..+...+.+++.+|. -.+++++|++++|.+..++ .+.++++|++|++++|.....+++..|.++++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n- 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN- 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-
Confidence 345555666777776 4478999999999998763 36889999999999994444777777999999999999999
Q ss_pred ccccC-chhHhccccCCEeecCCCCccc-cchh--hhccCCCcEEecCCccccccc-cchhhcCCCCCcEEEeecccccC
Q 039262 574 QLFYF-PLVISKLVSLQHLDLSDTNVAV-LPKE--LNALVNLKCLNLENAWMLTVI-PRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 574 ~i~~l-p~~i~~L~~L~~L~L~~~~i~~-Lp~~--l~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
.+..+ |..++++++|++|+|++|.+.. +|.. +..+++|++|++++|. +..+ |...++++++|++|++.+|.+..
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccc
Confidence 66655 8889999999999999999975 4544 8999999999999995 4555 55557899999999999987654
Q ss_pred CCCcccccchh-------------------------------hhcCCCCccEEEEEecccchhh-hhhccccccccceee
Q 039262 649 SDGIIREGELE-------------------------------ELLGLKYLEVLSLTLNNSRALH-CVLSSHRLRSCTQAL 696 (885)
Q Consensus 649 ~~~~~~~~~~~-------------------------------~l~~L~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L 696 (885)
... ..+. .+..+++|+.|+++.|...... ..........+++.|
T Consensus 169 ~~~----~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 169 ICE----EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp CCT----TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred cCh----hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence 320 0011 1223456666666666543211 111100011456666
Q ss_pred EecCCCCCCc---------ccccccc--cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCC
Q 039262 697 YLKDFKSSKS---------LDVSALA--DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKD 765 (885)
Q Consensus 697 ~l~~~~~~~~---------~~~~~l~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~ 765 (885)
.+.++..... .....+. ..++|+.|++++|.. ..+.+.+.. .+++|+.|++++| .+..
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~ 313 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI-FALLKSVFS---------HFTDLEQLTLAQN-EINK 313 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC-CEECTTTTT---------TCTTCCEEECTTS-CCCE
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccc-cccchhhcc---------cCCCCCEEECCCC-cccc
Confidence 6665422111 0001111 235788888888743 333344443 4788999999886 4555
Q ss_pred CC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCccccccc-CCCCCCCCCcceEEEccCCCCC
Q 039262 766 LT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSI-YWKPLPFPHLKEMKVIHCNKLK 842 (885)
Q Consensus 766 l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i-~~~~~~~p~L~~L~i~~c~~L~ 842 (885)
++ .++.+++|++|+|++| .++.++. ..+..+++|+.|+|+++. +..+ +.....+++|++|++.+| +++
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQN-FLGSIDS------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSS-CCCEECG------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred cChhHhcCcccCCEEECCCC-ccCCcCh------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccc
Confidence 53 4778899999999886 4555533 356778999999999864 4444 445667899999999887 688
Q ss_pred CCCCCCCccccceEEEec
Q 039262 843 KLPLDSNSAKERKIVIRG 860 (885)
Q Consensus 843 ~lp~~~~~~~~~l~~i~~ 860 (885)
.+|.........+..++-
T Consensus 385 ~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 385 SVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp CCCTTTTTTCTTCCEEEC
T ss_pred cCCHhHhccCCcccEEEc
Confidence 888765444445555543
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=1.3e-22 Score=242.67 Aligned_cols=328 Identities=11% Similarity=0.093 Sum_probs=227.8
Q ss_pred cccccceeEEEeecCCccc------------------CCCC-C--CCCCceeeeccCCccccccCchhhcCCCcccEEEe
Q 039262 511 VRKWEKVRRLSLMENQIDN------------------LSGV-P--TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNL 569 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L 569 (885)
...+++++.|++++|.+.. +|.. . ++++|++|++++|.....+|.. |.++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEEC
Confidence 5567899999999999887 7663 4 7999999999999556667754 889999999999
Q ss_pred cCCCccc--cCchhHhccc-------cCCEeecCCCCccccch--hhhccCCCcEEecCCccccccccchhhcCCCCCcE
Q 039262 570 SGAKQLF--YFPLVISKLV-------SLQHLDLSDTNVAVLPK--ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHV 638 (885)
Q Consensus 570 s~~~~i~--~lp~~i~~L~-------~L~~L~L~~~~i~~Lp~--~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~ 638 (885)
++|..++ .+|..++++. +|++|+|++|.+..+|. .++++++|++|++++| .+..+| . ++.+++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 9993266 4898888887 99999999999999998 8999999999999999 456888 3 899999999
Q ss_pred EEeecccccCCCCcccccchhhhcCCCC-ccEEEEEecccchhhhhhccccccccceeeEecCCCC--------------
Q 039262 639 LRMFGIGYSSSDGIIREGELEELLGLKY-LEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKS-------------- 703 (885)
Q Consensus 639 L~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------- 703 (885)
|++.+|.+.. .+..+..+++ |+.|+++.|.+..++....... ..+|+.|.+.++.-
T Consensus 600 L~Ls~N~l~~--------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~-~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 600 LKLDYNQIEE--------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS-VYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp EECCSSCCSC--------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC-SSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred EECcCCcccc--------chHHHhhccccCCEEECcCCCCCcCchhhhccc-cCCCCEEECcCCcCCCccccchhhhccc
Confidence 9999887653 2344666666 7777777776654443211110 01244444444321
Q ss_pred --------------CCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc-
Q 039262 704 --------------SKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF- 768 (885)
Q Consensus 704 --------------~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~- 768 (885)
+..++...+..+++|+.|++++|. +..++........ .....+++|+.|+|++| ++..+|.
T Consensus 671 ~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~--~~l~nl~~L~~L~Ls~N-~L~~lp~~ 746 (876)
T 4ecn_A 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKD--GNYKNTYLLTTIDLRFN-KLTSLSDD 746 (876)
T ss_dssp CCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTT--SCCTTGGGCCEEECCSS-CCCCCCGG
T ss_pred cCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhcccc--ccccccCCccEEECCCC-CCccchHH
Confidence 222322223345666667666663 2333322221000 00012348999999986 6777774
Q ss_pred cC--CCCCcceEeEeccccccccccccccccccCccCCccceeecCCcc------cccccCCCCCCCCCcceEEEccCCC
Q 039262 769 LA--FAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS------NFQSIYWKPLPFPHLKEMKVIHCNK 840 (885)
Q Consensus 769 l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~------~l~~i~~~~~~~p~L~~L~i~~c~~ 840 (885)
+. .+++|+.|+|++| .+..+|. .+..+++|+.|+|++++ -...++.....+++|+.|++++| +
T Consensus 747 l~~~~l~~L~~L~Ls~N-~L~~lp~-------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~ 817 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYN-CFSSFPT-------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-D 817 (876)
T ss_dssp GSTTTCTTCCEEECCSS-CCSSCCC-------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-C
T ss_pred hhhccCCCcCEEEeCCC-CCCccch-------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-C
Confidence 44 8899999999986 4555654 56788999999998733 34456666667999999999998 5
Q ss_pred CCCCCCCCCccccceEEEechhhhhcc
Q 039262 841 LKKLPLDSNSAKERKIVIRGYGEWWEQ 867 (885)
Q Consensus 841 L~~lp~~~~~~~~~l~~i~~~~~~~~~ 867 (885)
+..+|..... .+..++-..+-+..
T Consensus 818 L~~Ip~~l~~---~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 818 IRKVDEKLTP---QLYILDIADNPNIS 841 (876)
T ss_dssp CCBCCSCCCS---SSCEEECCSCTTCE
T ss_pred CCccCHhhcC---CCCEEECCCCCCCc
Confidence 6999987553 44555554444433
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.3e-22 Score=224.95 Aligned_cols=290 Identities=15% Similarity=0.162 Sum_probs=208.6
Q ss_pred cccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCC
Q 039262 513 KWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQ 589 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~ 589 (885)
.+++++++++.++.+..+|. +..+++|++|++++| .+..+++..|..+++|++|+|++| .+..+| ..++++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 45789999999999988876 467899999999999 788888777999999999999999 777765 5589999999
Q ss_pred EeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCcc
Q 039262 590 HLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLE 668 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 668 (885)
+|+|++|.+..+|.. +.++++|++|++++| .+..+++..++.+++|++|++.+|.+... .+..+++|+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------~~~~l~~L~ 189 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV----------DLSLIPSLF 189 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC----------CGGGCTTCS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc----------ccccccccc
Confidence 999999999999976 589999999999999 56777766688999999999998876542 255677788
Q ss_pred EEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccc
Q 039262 669 VLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFV 748 (885)
Q Consensus 669 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 748 (885)
.|+++.+....+. ....++.|.+.++. +..++. ..+++|+.|++++|.... ..+.. .
T Consensus 190 ~L~l~~n~l~~~~-------~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~n~l~~---~~~l~---------~ 246 (390)
T 3o6n_A 190 HANVSYNLLSTLA-------IPIAVEELDASHNS-INVVRG---PVNVELTILKLQHNNLTD---TAWLL---------N 246 (390)
T ss_dssp EEECCSSCCSEEE-------CCSSCSEEECCSSC-CCEEEC---CCCSSCCEEECCSSCCCC---CGGGG---------G
T ss_pred eeecccccccccC-------CCCcceEEECCCCe-eeeccc---cccccccEEECCCCCCcc---cHHHc---------C
Confidence 8888777654332 12466777776643 233321 224677777777764322 12222 4
Q ss_pred cCcccEEEeccCCCCCCC-C-ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCC
Q 039262 749 FHSLRKIQIDDCNKLKDL-T-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLP 826 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~ 826 (885)
+++|++|+++++ .++.+ | .+..+++|+.|+|++| .++.++. ....+|+|+.|+++++ .+..++.....
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 316 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN-RLVALNL-------YGQPIPTLKVLDLSHN-HLLHVERNQPQ 316 (390)
T ss_dssp CTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS-CCCEEEC-------SSSCCTTCCEEECCSS-CCCCCGGGHHH
T ss_pred CCCccEEECCCC-cCCCcChhHccccccCCEEECCCC-cCcccCc-------ccCCCCCCCEEECCCC-cceecCccccc
Confidence 677777777775 45444 2 4667777777777774 4555433 3456777777777775 45555544455
Q ss_pred CCCcceEEEccCCCCCCCCCCCC
Q 039262 827 FPHLKEMKVIHCNKLKKLPLDSN 849 (885)
Q Consensus 827 ~p~L~~L~i~~c~~L~~lp~~~~ 849 (885)
+++|++|++.+| +++.+|....
T Consensus 317 l~~L~~L~L~~N-~i~~~~~~~~ 338 (390)
T 3o6n_A 317 FDRLENLYLDHN-SIVTLKLSTH 338 (390)
T ss_dssp HTTCSEEECCSS-CCCCCCCCTT
T ss_pred cCcCCEEECCCC-ccceeCchhh
Confidence 777777777776 4666665443
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.3e-21 Score=222.28 Aligned_cols=139 Identities=19% Similarity=0.304 Sum_probs=94.9
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY 577 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~ 577 (885)
+...+..+..++....++++++|++++|.+..++.+..+++|++|++++| .+..+++ +.++++|++|++++| .+..
T Consensus 51 L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n-~l~~ 126 (466)
T 1o6v_A 51 LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN-QITD 126 (466)
T ss_dssp EECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCC
T ss_pred EecCCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC-CCCC
Confidence 33444455566666677788888888888877766778888888888888 5666655 778888888888888 7777
Q ss_pred CchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 578 FPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 578 lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|. ++++++|++|++++|.+..+|. +..+++|++|+++++ +..+++ ++.+++|++|++.+|.+
T Consensus 127 ~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 127 IDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKV 189 (466)
T ss_dssp CGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcC
Confidence 775 7788888888888887777663 555555555555422 233333 45556666666655543
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.1e-22 Score=237.20 Aligned_cols=327 Identities=13% Similarity=0.096 Sum_probs=200.9
Q ss_pred cccccceeEEEeecCCccc------------------CCC-CC--CCCCceeeeccCCccccccCchhhcCCCcccEEEe
Q 039262 511 VRKWEKVRRLSLMENQIDN------------------LSG-VP--TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNL 569 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~------------------l~~-~~--~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~L 569 (885)
...+++++.|++.+|.+.. +|. +. ++++|++|++++|.....+|.. |.++++|++|+|
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEEC
Confidence 3455677777777777766 654 34 5777777877777444455543 677777777777
Q ss_pred cCCCccc--cCchhHhcc------ccCCEeecCCCCccccch--hhhccCCCcEEecCCccccccccchhhcCCCCCcEE
Q 039262 570 SGAKQLF--YFPLVISKL------VSLQHLDLSDTNVAVLPK--ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVL 639 (885)
Q Consensus 570 s~~~~i~--~lp~~i~~L------~~L~~L~L~~~~i~~Lp~--~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (885)
++|..++ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++|.....+| . ++.+++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEE
Confidence 7773155 477777766 777777777777777777 77777777777777774332666 3 6677777777
Q ss_pred EeecccccCCCCcccccchhhhcCCCC-ccEEEEEecccchhhhhhcccc------------------------------
Q 039262 640 RMFGIGYSSSDGIIREGELEELLGLKY-LEVLSLTLNNSRALHCVLSSHR------------------------------ 688 (885)
Q Consensus 640 ~l~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~~~~~~~------------------------------ 688 (885)
++.+|.+.. .+..+..+++ |+.|+++.|....++.......
T Consensus 359 ~L~~N~l~~--------lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 359 NLAYNQITE--------IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp ECCSSEEEE--------CCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred ECCCCcccc--------ccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence 777665542 2233444555 5555555554443332111000
Q ss_pred ccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc
Q 039262 689 LRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF 768 (885)
Q Consensus 689 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~ 768 (885)
...+|+.|.+.++. +..++...+..+++|++|++++|... .++........ .....+++|+.|+|++| .++.+|.
T Consensus 431 ~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~lp~ 505 (636)
T 4eco_A 431 KGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDEN--ENFKNTYLLTSIDLRFN-KLTKLSD 505 (636)
T ss_dssp CCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETT--EECTTGGGCCEEECCSS-CCCBCCG
T ss_pred cCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccc--ccccccCCccEEECcCC-cCCccCh
Confidence 11245555555532 22333323444667777777766432 33333222000 00001338999999986 5777774
Q ss_pred -cC--CCCCcceEeEeccccccccccccccccccCccCCccceeecCC------cccccccCCCCCCCCCcceEEEccCC
Q 039262 769 -LA--FAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSS------LSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 769 -l~--~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~------~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
+. .+++|+.|+|++| .++.+|. .+..+++|+.|+|++ +.-...++.....+++|++|++++|
T Consensus 506 ~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N- 576 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYN-SFSKFPT-------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN- 576 (636)
T ss_dssp GGSTTTCTTCCEEECCSS-CCSSCCC-------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-
T ss_pred hhhhccCCCcCEEECCCC-CCCCcCh-------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-
Confidence 44 8899999999886 4555654 566789999999964 3334556666667899999999888
Q ss_pred CCCCCCCCCCccccceEEEechhhhh
Q 039262 840 KLKKLPLDSNSAKERKIVIRGYGEWW 865 (885)
Q Consensus 840 ~L~~lp~~~~~~~~~l~~i~~~~~~~ 865 (885)
+++.+|.... ..+..++-..+-+
T Consensus 577 ~l~~ip~~~~---~~L~~L~Ls~N~l 599 (636)
T 4eco_A 577 DIRKVNEKIT---PNISVLDIKDNPN 599 (636)
T ss_dssp CCCBCCSCCC---TTCCEEECCSCTT
T ss_pred cCCccCHhHh---CcCCEEECcCCCC
Confidence 5688988754 3445555444433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=6e-22 Score=230.50 Aligned_cols=148 Identities=21% Similarity=0.273 Sum_probs=124.6
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
+...+..++.+|.. ..+++++|++++|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++| .+
T Consensus 10 c~~~~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HL 86 (549)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred EECCCCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-cc
Confidence 34445566667653 3478999999999988764 4688999999999999 788888777999999999999999 78
Q ss_pred ccCchh-HhccccCCEeecCCCCcccc--chhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 576 FYFPLV-ISKLVSLQHLDLSDTNVAVL--PKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 576 ~~lp~~-i~~L~~L~~L~L~~~~i~~L--p~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
..+|.. ++++++|++|++++|.+..+ |..++++++|++|++++|..+..+|...++++++|++|++.+|.+..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 877665 99999999999999999854 67899999999999999976788886568999999999999887654
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=3e-22 Score=216.69 Aligned_cols=294 Identities=16% Similarity=0.143 Sum_probs=218.8
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~ 594 (885)
+++.+.+.++.+..+|... .++|++|++++| .+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 5788999998888887632 479999999999 788887777999999999999999 77766 7789999999999999
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
+|.+..+|..+. ++|++|++++| .+..+|...+..+++|++|++.+|.+.... .....+..+ +|+.|+++.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l-~L~~L~l~~ 181 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSG-----FEPGAFDGL-KLNYLRISE 181 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGG-----SCTTSSCSC-CCSCCBCCS
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCC-----CCcccccCC-ccCEEECcC
Confidence 999999998765 89999999999 577888777899999999999988764311 133445566 888999988
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
+....++... .++|+.|.+.++. +..++...+..+++|++|++++|. +..+++.+.. .+++|+.
T Consensus 182 n~l~~l~~~~-----~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~---------~l~~L~~ 245 (332)
T 2ft3_A 182 AKLTGIPKDL-----PETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLS---------FLPTLRE 245 (332)
T ss_dssp SBCSSCCSSS-----CSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGG---------GCTTCCE
T ss_pred CCCCccCccc-----cCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhh---------CCCCCCE
Confidence 8876654322 2578888888753 444444567888999999999884 4434333333 4889999
Q ss_pred EEeccCCCCCCCCc-cCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccc--cccCCCCCCCCCcc
Q 039262 755 IQIDDCNKLKDLTF-LAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNF--QSIYWKPLPFPHLK 831 (885)
Q Consensus 755 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l--~~i~~~~~~~p~L~ 831 (885)
|++++| .++.+|. +..+++|+.|++++| .++.++............+++|+.|++.+++.. ...+.....+++|+
T Consensus 246 L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 246 LHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp EECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred EECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 999986 6778874 888999999999985 577765532211111223688999999987643 12222344578888
Q ss_pred eEEEccCC
Q 039262 832 EMKVIHCN 839 (885)
Q Consensus 832 ~L~i~~c~ 839 (885)
.|++.+|.
T Consensus 324 ~l~l~~n~ 331 (332)
T 2ft3_A 324 AIQFGNYK 331 (332)
T ss_dssp TEEC----
T ss_pred hhhccccc
Confidence 88888775
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.6e-21 Score=228.10 Aligned_cols=145 Identities=24% Similarity=0.295 Sum_probs=106.3
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+.++..+|. .-.+++++|++++|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++| .
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~ 87 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-P 87 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCC-c
Confidence 34444555666664 23457888888888887764 3577888888888888 677777777888888888888888 6
Q ss_pred cccCc-hhHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCcccccc--ccchhhcCCCCCcEEEeecccc
Q 039262 575 LFYFP-LVISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTV--IPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 575 i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+..+| ..++++.+|++|++++|.+..+|. .++++++|++|++++|. +.. +|.. ++++++|++|++.+|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCcc
Confidence 66654 567888888888888888877775 57788888888888873 443 5654 77788888888776654
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3.1e-21 Score=227.27 Aligned_cols=147 Identities=22% Similarity=0.252 Sum_probs=120.2
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+.+++.+|.. ..+++++|++++|.+..++. +.++++|++|++++| .+..+++..|.++++|++|+|++| .
T Consensus 15 ~~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n-~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN-P 91 (606)
T ss_dssp EEECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred ceEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-c
Confidence 344556667777652 34789999999999888754 678999999999999 777887777899999999999999 6
Q ss_pred cccC-chhHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccc-cccchhhcCCCCCcEEEeeccccc
Q 039262 575 LFYF-PLVISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLT-VIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 575 i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
+..+ |..++++++|++|+|++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++.+|.+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 7776 788999999999999999998887 678999999999999994322 46765 889999999999887654
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=8.2e-22 Score=230.83 Aligned_cols=284 Identities=18% Similarity=0.201 Sum_probs=181.1
Q ss_pred cccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCC
Q 039262 513 KWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQ 589 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~ 589 (885)
.+++++.+++.++.+..+|. +..+++|++|++++| .+..+++..|..+++|++|+|++| .+..+|. .++++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCC
Confidence 34577888888887777765 356788888888888 677777666788888888888888 6666654 467888888
Q ss_pred EeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCcc
Q 039262 590 HLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLE 668 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 668 (885)
+|+|++|.+..+|.. ++++++|++|++++| .+..+++..++.+++|++|++.+|.+.... +..+++|+
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~ 195 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLF 195 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC----------GGGCTTCS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC----------hhhhhhhh
Confidence 888888888888865 478888888888888 456666555778888888888877654321 33344455
Q ss_pred EEEEEec-------------------ccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCcc
Q 039262 669 VLSLTLN-------------------NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYEL 729 (885)
Q Consensus 669 ~L~l~~~-------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l 729 (885)
.|+++.| .+..++.. ...+|+.|.+.++.- +.. ..+..+++|+.|++++|. +
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~-----~~~~L~~L~L~~n~l-~~~--~~l~~l~~L~~L~Ls~N~-l 266 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-----VNVELTILKLQHNNL-TDT--AWLLNYPGLVEVDLSYNE-L 266 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-----CCSCCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSC-C
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccc-----cCCCCCEEECCCCCC-CCC--hhhccCCCCCEEECCCCc-c
Confidence 5554444 33322211 123566666665432 222 245666777777777663 3
Q ss_pred ceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc-cCCCCCcceEeEeccccccccccccccccccCccCCccce
Q 039262 730 EELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF-LAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQY 808 (885)
Q Consensus 730 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~ 808 (885)
..+.+.... .+++|+.|+|++| .+..+|. .+.+|+|+.|+|++| .+..++. .+..+++|+.
T Consensus 267 ~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~-------~~~~l~~L~~ 328 (597)
T 3oja_B 267 EKIMYHPFV---------KMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER-------NQPQFDRLEN 328 (597)
T ss_dssp CEEESGGGT---------TCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG-------GHHHHTTCSE
T ss_pred CCCCHHHhc---------CccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc-------ccccCCCCCE
Confidence 333333333 3667777777764 4555543 345677777777765 3444443 3456677777
Q ss_pred eecCCcccccccCCCCCCCCCcceEEEccCC
Q 039262 809 LGLSSLSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 809 L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
|+|+++. +..++ ...+++|+.|++++||
T Consensus 329 L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 329 LYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp EECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred EECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 7777643 44433 4456777777776654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2e-21 Score=228.88 Aligned_cols=171 Identities=20% Similarity=0.162 Sum_probs=134.2
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+..++.+|.. -.+.+++|++++|.+..++ .+.++++|++|++++| .+..+++..|.++++|++|+|++| .
T Consensus 16 ~~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTAN-P 92 (606)
T ss_dssp EEECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred eEECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCC-c
Confidence 344455566666642 3458999999999998874 3689999999999999 677787777999999999999999 6
Q ss_pred ccc-CchhHhccccCCEeecCCCCcccc-chhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 575 LFY-FPLVISKLVSLQHLDLSDTNVAVL-PKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 575 i~~-lp~~i~~L~~L~~L~L~~~~i~~L-p~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
+.. .|..++++++|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+...
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 168 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYL--- 168 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEE---
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccccc---
Confidence 665 477899999999999999999988 577999999999999999 45665321255699999999999876542
Q ss_pred ccccchhhhcCCCCcc--EEEEEecccc
Q 039262 653 IREGELEELLGLKYLE--VLSLTLNNSR 678 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~--~L~l~~~~~~ 678 (885)
....+..+++|+ .|+++.|...
T Consensus 169 ----~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 169 ----SKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp ----CHHHHHTTTTCCSEEEECTTCCCC
T ss_pred ----ChhhhhhhcccceeEEecCCCccC
Confidence 345567777777 5666655543
No 20
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.3e-21 Score=220.12 Aligned_cols=291 Identities=19% Similarity=0.250 Sum_probs=198.5
Q ss_pred cccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 513 KWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
.+++++.|++.++.+..++.+..+++|++|++++| .+..+++ +.++++|++|++++| .+..+|. ++++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCC-ccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEE
Confidence 45689999999999999988889999999999999 7777776 899999999999999 8888886 99999999999
Q ss_pred cCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEE
Q 039262 593 LSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSL 672 (885)
Q Consensus 593 L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 672 (885)
+++|.+..+|. +.++++|++|++++| .+..+|. ++.+++|++|++.. ... ....+..+++|+.|++
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~-~~~---------~~~~~~~l~~L~~L~l 184 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN-QVT---------DLKPLANLTTLERLDI 184 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEE-SCC---------CCGGGTTCTTCCEEEC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCC-ccc---------CchhhccCCCCCEEEC
Confidence 99999999986 899999999999999 5677775 89999999999963 221 1233677777777777
Q ss_pred EecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccc------------
Q 039262 673 TLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVV------------ 740 (885)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~------------ 740 (885)
+.+....+..+. ..++|+.|.+.++.- .... .+..+++|+.|++++|.. ..+ ......
T Consensus 185 ~~n~l~~~~~l~----~l~~L~~L~l~~n~l-~~~~--~~~~l~~L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 185 SSNKVSDISVLA----KLTNLESLIATNNQI-SDIT--PLGILTNLDELSLNGNQL-KDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp CSSCCCCCGGGG----GCTTCSEEECCSSCC-CCCG--GGGGCTTCCEEECCSSCC-CCC--GGGGGCTTCSEEECCSSC
T ss_pred cCCcCCCChhhc----cCCCCCEEEecCCcc-cccc--cccccCCCCEEECCCCCc-ccc--hhhhcCCCCCEEECCCCc
Confidence 777655443321 124566666665432 1111 234455555555555422 111 111100
Q ss_pred -cCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccc
Q 039262 741 -QNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQS 819 (885)
Q Consensus 741 -~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~ 819 (885)
....+...+++|+.|++++| .+..++++..+++|+.|++++| .++.++ .+..+++|+.|+++++. +..
T Consensus 255 l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n-~l~~~~--------~~~~l~~L~~L~L~~n~-l~~ 323 (466)
T 1o6v_A 255 ISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN-QLEDIS--------PISNLKNLTYLTLYFNN-ISD 323 (466)
T ss_dssp CCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSS-CCSCCG--------GGGGCTTCSEEECCSSC-CSC
T ss_pred cccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCC-cccCch--------hhcCCCCCCEEECcCCc-CCC
Confidence 00000113556666666664 4555555666666666666664 233332 25667888888888763 343
Q ss_pred cCCCCCCCCCcceEEEccCCCCCCCC
Q 039262 820 IYWKPLPFPHLKEMKVIHCNKLKKLP 845 (885)
Q Consensus 820 i~~~~~~~p~L~~L~i~~c~~L~~lp 845 (885)
+.. ...+++|++|++.+| +++.+|
T Consensus 324 ~~~-~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 324 ISP-VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp CGG-GGGCTTCCEEECCSS-CCCCCG
T ss_pred chh-hccCccCCEeECCCC-ccCCch
Confidence 322 346788888888877 566664
No 21
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.7e-21 Score=209.12 Aligned_cols=293 Identities=18% Similarity=0.150 Sum_probs=221.9
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~ 594 (885)
+++.+.+.++.+..+|.. -.++|++|++++| .+..++...|.++++|++|+|++| .++.+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 677888888888887753 2378999999999 788888877999999999999999 77776 8889999999999999
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
+|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|.+.... .....+..+++|+.|+++.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~L~~L~l~~ 180 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG-----IENGAFQGMKKLSYIRIAD 180 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG-----BCTTGGGGCTTCCEEECCS
T ss_pred CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccC-----cChhhccCCCCcCEEECCC
Confidence 999999997765 79999999999 567788777899999999999988764311 2345678899999999998
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
+....++... .++|+.|.+.++. +.......+..+++|++|++++|. +..+++.... .+++|++
T Consensus 181 n~l~~l~~~~-----~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~ 244 (330)
T 1xku_A 181 TNITTIPQGL-----PPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLA---------NTPHLRE 244 (330)
T ss_dssp SCCCSCCSSC-----CTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGG---------GSTTCCE
T ss_pred CccccCCccc-----cccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCc-CceeChhhcc---------CCCCCCE
Confidence 8876554322 2688999998864 455544568888999999999884 4444443333 4789999
Q ss_pred EEeccCCCCCCCC-ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccC---CCCCCCCCc
Q 039262 755 IQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIY---WKPLPFPHL 830 (885)
Q Consensus 755 L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~---~~~~~~p~L 830 (885)
|++++| .+..+| .+..+++|++|++++| .++.++............++.|+.|++.+++- ..+. .....+++|
T Consensus 245 L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l 321 (330)
T 1xku_A 245 LHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVR 321 (330)
T ss_dssp EECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCG
T ss_pred EECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc-cccccCccccccccce
Confidence 999996 677776 5788999999999986 57777653321111223468889999998663 3222 233456778
Q ss_pred ceEEEccC
Q 039262 831 KEMKVIHC 838 (885)
Q Consensus 831 ~~L~i~~c 838 (885)
+.++++++
T Consensus 322 ~~l~L~~N 329 (330)
T 1xku_A 322 AAVQLGNY 329 (330)
T ss_dssp GGEEC---
T ss_pred eEEEeccc
Confidence 88887765
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=4.9e-22 Score=232.71 Aligned_cols=284 Identities=14% Similarity=0.144 Sum_probs=197.9
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCCCccccch-hhhccCCC
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDTNVAVLPK-ELNALVNL 611 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L 611 (885)
..+++++.|++++| .+..+|+.+|..+++|++|+|++| .+..+| ..++.+++|++|+|++|.+..+|. .++++++|
T Consensus 48 l~l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 35688999999999 889999999999999999999999 787765 489999999999999999998885 47999999
Q ss_pred cEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccc
Q 039262 612 KCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRS 691 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 691 (885)
++|++++| .+..+|+..++.+++|++|++.+|.+... ....+..+++|+.|+++.|....++. ...+
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~l~ 192 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLTHVDL-----SLIP 192 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECTTSCCSBCCG-----GGCT
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC-------ChhhhhcCCcCcEEECcCCCCCCcCh-----hhhh
Confidence 99999999 67899988779999999999999877542 34568889999999999887765431 1234
Q ss_pred cceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEeccccc----------ccCCCcccccCcccEEEeccCC
Q 039262 692 CTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGV----------VQNRSQPFVFHSLRKIQIDDCN 761 (885)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~----------~~~~~~~~~~~~L~~L~L~~c~ 761 (885)
+|+.|.+.++. +. .+...++|+.|++++|. +..++...... +........+++|+.|+|++|
T Consensus 193 ~L~~L~l~~n~-l~-----~l~~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N- 264 (597)
T 3oja_B 193 SLFHANVSYNL-LS-----TLAIPIAVEELDASHNS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN- 264 (597)
T ss_dssp TCSEEECCSSC-CS-----EEECCTTCSEEECCSSC-CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-
T ss_pred hhhhhhcccCc-cc-----cccCCchhheeeccCCc-ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-
Confidence 66666665532 11 12223445555555442 22111110000 000000124667777777764
Q ss_pred CCCCC-C-ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCC
Q 039262 762 KLKDL-T-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCN 839 (885)
Q Consensus 762 ~l~~l-~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~ 839 (885)
.+..+ | .++.+++|+.|+|++| .+..++. ....+|+|+.|+|+++ .+..++.....+++|+.|++++|
T Consensus 265 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N- 334 (597)
T 3oja_B 265 ELEKIMYHPFVKMQRLERLYISNN-RLVALNL-------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN- 334 (597)
T ss_dssp CCCEEESGGGTTCSSCCEEECTTS-CCCEEEC-------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-
T ss_pred ccCCCCHHHhcCccCCCEEECCCC-CCCCCCc-------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-
Confidence 34443 2 4666777777777764 4444433 3456788888888875 45566655556888888888887
Q ss_pred CCCCCCCCCCc
Q 039262 840 KLKKLPLDSNS 850 (885)
Q Consensus 840 ~L~~lp~~~~~ 850 (885)
++..+|.....
T Consensus 335 ~l~~~~~~~~~ 345 (597)
T 3oja_B 335 SIVTLKLSTHH 345 (597)
T ss_dssp CCCCCCCCTTC
T ss_pred CCCCcChhhcC
Confidence 57777765544
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.2e-21 Score=227.19 Aligned_cols=138 Identities=26% Similarity=0.231 Sum_probs=72.9
Q ss_pred HhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhh
Q 039262 582 ISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEEL 661 (885)
Q Consensus 582 i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 661 (885)
++.+++|++|++++|.+..+|..+..+++|++|++++| .+..+++..+..+++|++|++.+|...... ....+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~ 346 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLEL------GTGCL 346 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBC------CSSTT
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccccc------chhhh
Confidence 45556666666666666666666666666666666666 334443333566666666666665433211 12235
Q ss_pred cCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccC
Q 039262 662 LGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECY 727 (885)
Q Consensus 662 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 727 (885)
..+++|+.|+++.+...............++|+.|.+.++. +.......+..+++|++|++++|.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCC
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCc
Confidence 56666666666666554332111111223456666665543 222222345555666666666553
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=3.9e-21 Score=221.92 Aligned_cols=142 Identities=23% Similarity=0.239 Sum_probs=114.6
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
..+...+..++.+|... .+++++|++++|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N- 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN- 79 (520)
T ss_dssp CEEECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS-
T ss_pred ceEecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC-
Confidence 34555566666666532 379999999999998875 3688999999999999 777886667999999999999999
Q ss_pred ccccCchhHhccccCCEeecCCCCccc--cchhhhccCCCcEEecCCccccccccchhhcCCCCC--cEEEeecccc
Q 039262 574 QLFYFPLVISKLVSLQHLDLSDTNVAV--LPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSL--HVLRMFGIGY 646 (885)
Q Consensus 574 ~i~~lp~~i~~L~~L~~L~L~~~~i~~--Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 646 (885)
.++.+|.. .+++|++|+|++|.+.. +|..++++++|++|++++|. +... .+..+++| ++|++.+|.+
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 88999977 89999999999999976 56899999999999999984 3332 25566666 8888777655
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=227.93 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=207.4
Q ss_pred cccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhcccc
Q 039262 511 VRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVS 587 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~ 587 (885)
...++++++|++++|.+..++. +.++++|++|++++| .+..+++..|.++++|++|++++| .++.+|. .++++++
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKT 125 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTT
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCcccccccccccc-ccccCCCcccccccc
Confidence 4567789999999988877653 678899999999998 677777777888999999999998 7877765 5888899
Q ss_pred CCEeecCCCCccc--cchhhhccCCCcEEecCCccccccccchhhcCCCCC----cEEEeecccccCCCC----------
Q 039262 588 LQHLDLSDTNVAV--LPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSL----HVLRMFGIGYSSSDG---------- 651 (885)
Q Consensus 588 L~~L~L~~~~i~~--Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~~~~~~~---------- 651 (885)
|++|++++|.+.. +|..++++++|++|++++| .+..+++..++.+++| ++|++.+|.+.....
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 9999999988875 6888888999999999888 3444443334444444 444444332211000
Q ss_pred ----------------------------------------------------------------cccccchhhhcCCCCc
Q 039262 652 ----------------------------------------------------------------IIREGELEELLGLKYL 667 (885)
Q Consensus 652 ----------------------------------------------------------------~~~~~~~~~l~~L~~L 667 (885)
.........+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 0000011223444556
Q ss_pred cEEEEEecccchhhhhhcc---------------------------------------ccccccceeeEecCCCCCCccc
Q 039262 668 EVLSLTLNNSRALHCVLSS---------------------------------------HRLRSCTQALYLKDFKSSKSLD 708 (885)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~---------------------------------------~~~~~~L~~L~l~~~~~~~~~~ 708 (885)
+.|+++.+....++..... ....++|+.|.+.++. +....
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~-l~~~~ 363 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKG 363 (570)
T ss_dssp SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC-CBEEE
T ss_pred cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc-cCccc
Confidence 6665555443322211000 0123566667766543 22221
Q ss_pred --ccccccCCCcceEeecccCccceEEeccccccc------------CC---CcccccCcccEEEeccCCCCCCCC-ccC
Q 039262 709 --VSALADLKHLKRLQIVECYELEELKMDYTGVVQ------------NR---SQPFVFHSLRKIQIDDCNKLKDLT-FLA 770 (885)
Q Consensus 709 --~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~------------~~---~~~~~~~~L~~L~L~~c~~l~~l~-~l~ 770 (885)
...+..+++|++|++++|. +..++..+..... .. .....+++|++|++++|.-....| .+.
T Consensus 364 ~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 364 CCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 1245567888888888774 3333333211000 00 012245677777777763222223 356
Q ss_pred CCCCcceEeEeccccc-cccccccccccccCccCCccceeecCCccccccc-CCCCCCCCCcceEEEccCCCCCCCCCCC
Q 039262 771 FAPNLKSIEVNSCHGI-QEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSI-YWKPLPFPHLKEMKVIHCNKLKKLPLDS 848 (885)
Q Consensus 771 ~l~~L~~L~L~~~~~l-~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i-~~~~~~~p~L~~L~i~~c~~L~~lp~~~ 848 (885)
.+++|+.|++++|... ..++ ..+..+++|+.|++++|. +..+ +.....+++|++|++++| +++.+|...
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred cCCcCcEEECcCCcCccccch-------hhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC-cCCCCCHHH
Confidence 6777777777776432 1232 257788999999999874 4444 555667899999999988 788888665
Q ss_pred CccccceEEEechh
Q 039262 849 NSAKERKIVIRGYG 862 (885)
Q Consensus 849 ~~~~~~l~~i~~~~ 862 (885)
......+..++-..
T Consensus 514 ~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 514 FDRLTSLQKIWLHT 527 (570)
T ss_dssp TTTCTTCCEEECCS
T ss_pred hhcccCCcEEEecC
Confidence 44445555554433
No 26
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=1.3e-21 Score=230.59 Aligned_cols=179 Identities=15% Similarity=0.107 Sum_probs=101.4
Q ss_pred hcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCcc-----------
Q 039262 661 LLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYEL----------- 729 (885)
Q Consensus 661 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l----------- 729 (885)
+..+++|+.|+++.|...............++|+.|.+.++. +..++ ..+..+++|+.|++++|...
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch-hhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 345678888888877655432111111112456666665543 22222 23444445555554444211
Q ss_pred -------------ceEEecccccccCCCcccccCcccEEEeccCCCCCC--CC-ccCCCCCcceEeEecccccccccccc
Q 039262 730 -------------EELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKD--LT-FLAFAPNLKSIEVNSCHGIQEIVSDV 793 (885)
Q Consensus 730 -------------~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L~~~~~l~~i~~~~ 793 (885)
....+... ..+++|++|++++|. +.. +| .++.+++|+.|+|++| .++.++.
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-- 490 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIF---------LGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISW-- 490 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTT---------TTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECT--
T ss_pred ccCCEEECcCCCCCccchhhh---------cCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccCh--
Confidence 11111111 136677777777753 332 33 4667777777777776 3444332
Q ss_pred ccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCCCCccccceEEEe
Q 039262 794 PEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLDSNSAKERKIVIR 859 (885)
Q Consensus 794 ~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~~~~~~~~l~~i~ 859 (885)
..+..+++|+.|+++++.-....+.....+++|++|++++| +++.+|.........+..++
T Consensus 491 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 491 ----GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFN 551 (606)
T ss_dssp ----TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEE
T ss_pred ----hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEE
Confidence 35778899999999987544434556677899999999998 58899887433222344443
No 27
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4.9e-21 Score=233.40 Aligned_cols=149 Identities=21% Similarity=0.301 Sum_probs=124.9
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
..+...+..++.+|. .++++++|++++|.+..+. .+.++++|++|++++|.....+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 455566777888887 6789999999999998763 46899999999999996677787777999999999999999
Q ss_pred ccccC-chhHhccccCCEeecCCCCccc-cchh--hhccCCCcEEecCCccccccc-cchhhcCCCCCcEEEeecccccC
Q 039262 574 QLFYF-PLVISKLVSLQHLDLSDTNVAV-LPKE--LNALVNLKCLNLENAWMLTVI-PRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 574 ~i~~l-p~~i~~L~~L~~L~L~~~~i~~-Lp~~--l~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
.+..+ |..++++++|++|+|++|.+.. +|.. +++|++|++|++++|. +..+ |...++++++|++|++.+|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCe
Confidence 67665 8899999999999999999975 5655 8999999999999995 4444 33458999999999999987654
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=3.5e-21 Score=213.50 Aligned_cols=270 Identities=17% Similarity=0.191 Sum_probs=220.2
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCccccc-hhhhccCCC
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVLP-KELNALVNL 611 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L 611 (885)
..++++++|++++| .+..+|..+|..+++|++|+|++| .+..+|. .++.+++|++|+|++|.+..+| ..++++++|
T Consensus 42 ~~l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEecCC-chhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 45689999999999 789999998999999999999999 7877764 8999999999999999999887 458999999
Q ss_pred cEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccc
Q 039262 612 KCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRS 691 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 691 (885)
++|++++| .+..+|.+.++.+++|++|++.+|.+... ....+..+++|+.|+++.|....++ ....+
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~ 186 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI-------EDDTFQATTSLQNLQLSSNRLTHVD-----LSLIP 186 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTSSCTTCCEEECCSSCCSBCC-----GGGCT
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCcc-------ChhhccCCCCCCEEECCCCcCCccc-----ccccc
Confidence 99999999 67899988678999999999999876542 3445788999999999998876542 12246
Q ss_pred cceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccCC
Q 039262 692 CTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAF 771 (885)
Q Consensus 692 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~ 771 (885)
+++.|.+.++. +. .+...++|++|++++|. +..++. . .+++|+.|++++| .++.+++++.
T Consensus 187 ~L~~L~l~~n~-l~-----~~~~~~~L~~L~l~~n~-l~~~~~-~-----------~~~~L~~L~l~~n-~l~~~~~l~~ 246 (390)
T 3o6n_A 187 SLFHANVSYNL-LS-----TLAIPIAVEELDASHNS-INVVRG-P-----------VNVELTILKLQHN-NLTDTAWLLN 246 (390)
T ss_dssp TCSEEECCSSC-CS-----EEECCSSCSEEECCSSC-CCEEEC-C-----------CCSSCCEEECCSS-CCCCCGGGGG
T ss_pred ccceeeccccc-cc-----ccCCCCcceEEECCCCe-eeeccc-c-----------ccccccEEECCCC-CCcccHHHcC
Confidence 88888887643 22 33445789999999984 443321 1 3679999999996 6888889999
Q ss_pred CCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCC
Q 039262 772 APNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLD 847 (885)
Q Consensus 772 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~ 847 (885)
+++|++|+|++| .++.++. ..+..+++|+.|+++++ .++.++.....+|+|++|++++| +++.+|..
T Consensus 247 l~~L~~L~Ls~n-~l~~~~~------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 313 (390)
T 3o6n_A 247 YPGLVEVDLSYN-ELEKIMY------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERN 313 (390)
T ss_dssp CTTCSEEECCSS-CCCEEES------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGG
T ss_pred CCCccEEECCCC-cCCCcCh------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcc
Confidence 999999999997 4555433 35788999999999984 67777776678999999999998 68887754
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1e-20 Score=220.40 Aligned_cols=142 Identities=27% Similarity=0.358 Sum_probs=116.5
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
..+...+..++.+|.. -++++++|++++|.+..++ .+..+++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N- 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN- 110 (562)
T ss_dssp CEEECTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS-
T ss_pred cEEEcCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC-
Confidence 4556666677777653 2478999999999998886 4788999999999999 788887777999999999999999
Q ss_pred ccccCchhHhccccCCEeecCCCCccccc--hhhhccCCCcEEecCCccccccccchhhcCCCCC--cEEEeecccc
Q 039262 574 QLFYFPLVISKLVSLQHLDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIPRRLISSFSSL--HVLRMFGIGY 646 (885)
Q Consensus 574 ~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 646 (885)
.++.+|.. .+++|++|+|++|.+..+| ..++++++|++|++++|. +...+ +..+++| ++|++.+|.+
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 88899977 8999999999999998875 789999999999999984 44432 4455555 9999888765
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=3.2e-21 Score=217.07 Aligned_cols=299 Identities=16% Similarity=0.164 Sum_probs=156.5
Q ss_pred cCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch
Q 039262 501 AGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL 580 (885)
Q Consensus 501 ~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~ 580 (885)
.+..+...+....++++++|++.+|.+..++ +..+++|++|++++| .+..++ +..+++|++|++++| .++.+|
T Consensus 50 s~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N-~l~~l~- 122 (457)
T 3bz5_A 50 HNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN-KLTKLD- 122 (457)
T ss_dssp CSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS-CCSCCC-
T ss_pred cCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC-cCCeec-
Confidence 3334444444455556666666666665553 555666666666666 444443 455666666666666 555554
Q ss_pred hHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhh
Q 039262 581 VISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEE 660 (885)
Q Consensus 581 ~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (885)
++.+++|++|++++|.+..+| ++.+++|++|++++|..+..++ ++.+++|++|++.+|.+... .
T Consensus 123 -~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l---------~- 186 (457)
T 3bz5_A 123 -VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL---------D- 186 (457)
T ss_dssp -CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC---------C-
T ss_pred -CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee---------c-
Confidence 556666666666666666554 5566666666666665444443 45566666666666554321 1
Q ss_pred hcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccc
Q 039262 661 LLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVV 740 (885)
Q Consensus 661 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 740 (885)
+..+++|+.|+++.|....++ ....++|+.|.+.++. ++.++ +..+++|+.|++++|. +..+++......
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~-l~~ip---~~~l~~L~~L~l~~N~-l~~~~~~~l~~L 256 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVNP-LTELDVSTLSKL 256 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSC-CSCCCCTTCTTC
T ss_pred cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCc-ccccC---ccccCCCCEEEeeCCc-CCCcCHHHCCCC
Confidence 455666666666666554431 1123466666666543 23332 5556667777776663 222221111000
Q ss_pred cCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEecccccccccccccccc-ccCccCCccceeecCCcccccc
Q 039262 741 QNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVM-RNLNLFAKLQYLGLSSLSNFQS 819 (885)
Q Consensus 741 ~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~-~~~~~~p~L~~L~L~~~~~l~~ 819 (885)
. .-.....+|+.|++++|..+..+| .+.+++|+.|++++|..++.++....... -.+..+|+|+.|+++++ +++.
T Consensus 257 ~--~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~ 332 (457)
T 3bz5_A 257 T--TLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE 332 (457)
T ss_dssp C--EEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC
T ss_pred C--EEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccc
Confidence 0 000011233444444443333333 45667777777777766666553211000 12445566666666652 3444
Q ss_pred cCCCCCCCCCcceEEEccC
Q 039262 820 IYWKPLPFPHLKEMKVIHC 838 (885)
Q Consensus 820 i~~~~~~~p~L~~L~i~~c 838 (885)
++ ...+++|+.|+++++
T Consensus 333 l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 333 LD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CC--CTTCTTCSEEECCSS
T ss_pred cc--cccCCcCcEEECCCC
Confidence 42 445677777777654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=218.96 Aligned_cols=289 Identities=16% Similarity=0.153 Sum_probs=217.9
Q ss_pred CcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCC
Q 039262 510 DVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQ 589 (885)
Q Consensus 510 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (885)
....++++++|++.+|.+..++.+..+++|++|++++| .+..+| +..+++|++|++++| .++.+| ++.+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCC
Confidence 34556799999999999999988889999999999999 677775 789999999999999 788886 89999999
Q ss_pred EeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 590 HLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
+|++++|.+..+| ++.+++|++|++++| .+..+| ++.+++|++|++.+|..... + .+..+++|+.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~--------~-~~~~l~~L~~ 174 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITK--------L-DVTPQTQLTT 174 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCC--------C-CCTTCTTCCE
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccc--------c-ccccCCcCCE
Confidence 9999999999987 899999999999999 567775 78999999999998854331 1 4778899999
Q ss_pred EEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCccccc
Q 039262 670 LSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVF 749 (885)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (885)
|+++.|....++ ....++|+.|.+.++. ++.+ .+..+++|+.|++++|. +..++ + . .+
T Consensus 175 L~ls~n~l~~l~-----l~~l~~L~~L~l~~N~-l~~~---~l~~l~~L~~L~Ls~N~-l~~ip--~-~---------~l 232 (457)
T 3bz5_A 175 LDCSFNKITELD-----VSQNKLLNRLNCDTNN-ITKL---DLNQNIQLTFLDCSSNK-LTEID--V-T---------PL 232 (457)
T ss_dssp EECCSSCCCCCC-----CTTCTTCCEEECCSSC-CSCC---CCTTCTTCSEEECCSSC-CSCCC--C-T---------TC
T ss_pred EECCCCccceec-----cccCCCCCEEECcCCc-CCee---ccccCCCCCEEECcCCc-ccccC--c-c---------cc
Confidence 999999877654 2224689999998754 3333 47788999999999984 44332 2 2 48
Q ss_pred CcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccc--cccccCccCCccceeecCCcccccccCCC----
Q 039262 750 HSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVP--EVMRNLNLFAKLQYLGLSSLSNFQSIYWK---- 823 (885)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~--~~~~~~~~~p~L~~L~L~~~~~l~~i~~~---- 823 (885)
++|+.|+++++ .++.+| ++.+++|+.|+++++ .++.+.-... ........+++|+.|++++|+.++.++..
T Consensus 233 ~~L~~L~l~~N-~l~~~~-~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 233 TQLTYFDCSVN-PLTELD-VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TTCSEEECCSS-CCSCCC-CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCCEEEeeCC-cCCCcC-HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcc
Confidence 89999999996 677775 566777766665542 3333321100 00013467899999999999877776532
Q ss_pred ----CCCCCCcceEEEccCCCCCCCCC
Q 039262 824 ----PLPFPHLKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 824 ----~~~~p~L~~L~i~~c~~L~~lp~ 846 (885)
...+|+|++|++.+| +++.+|.
T Consensus 310 ~~L~l~~~~~L~~L~L~~N-~l~~l~l 335 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNT-ELTELDV 335 (457)
T ss_dssp SCCCCTTCTTCCEEECTTC-CCSCCCC
T ss_pred eEechhhcccCCEEECCCC-ccccccc
Confidence 223456666666554 4555543
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=2.4e-21 Score=208.54 Aligned_cols=90 Identities=21% Similarity=0.295 Sum_probs=73.7
Q ss_pred CCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEe
Q 039262 536 CPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLN 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~ 615 (885)
.++++.|++++| .+..+|.. +.++++|++|+|++| .+..+|..++++++|++|+|++|.+..+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 356777777777 66677776 555888999999988 777888888889999999999998888888888899999999
Q ss_pred cCCccccccccch
Q 039262 616 LENAWMLTVIPRR 628 (885)
Q Consensus 616 l~~~~~l~~lp~~ 628 (885)
+++|..+..+|..
T Consensus 157 L~~n~~~~~~p~~ 169 (328)
T 4fcg_A 157 IRACPELTELPEP 169 (328)
T ss_dssp EEEETTCCCCCSC
T ss_pred CCCCCCccccChh
Confidence 9888777777764
No 33
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=2.2e-21 Score=233.99 Aligned_cols=130 Identities=23% Similarity=0.283 Sum_probs=67.8
Q ss_pred ccccceeEEEeecCCccc-CCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc-cCchhHhccccCC
Q 039262 512 RKWEKVRRLSLMENQIDN-LSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF-YFPLVISKLVSLQ 589 (885)
Q Consensus 512 ~~~~~lr~L~l~~~~~~~-l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~ 589 (885)
..++++++|++.+|.+.. ++.+..+++|++|++++| .+....+..+..+++|++|+|++| .+. .+|.. .+++|+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~--~l~~L~ 272 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN-QFVGPIPPL--PLKSLQ 272 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSS-CCEESCCCC--CCTTCC
T ss_pred ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCC-cccCccCcc--ccCCCC
Confidence 445566777777666554 334556666777777666 343332333566666666666666 333 23322 445555
Q ss_pred EeecCCCCcc-ccchhhhcc-CCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 590 HLDLSDTNVA-VLPKELNAL-VNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 590 ~L~L~~~~i~-~Lp~~l~~L-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|++++|.+. .+|..+..+ ++|++|++++|.....+|.. ++.+++|++|++.+|.+
T Consensus 273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l 330 (768)
T 3rgz_A 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNF 330 (768)
T ss_dssp EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEE
T ss_pred EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcc
Confidence 5555555543 445444433 55555555555332233432 45555555555555443
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1.8e-20 Score=223.87 Aligned_cols=171 Identities=22% Similarity=0.224 Sum_probs=135.5
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
..+...+.+++.+|.. ..+++++|++++|.+..++. +.++++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n- 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN- 83 (680)
T ss_dssp SEEECCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS-
T ss_pred CeeECCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC-
Confidence 3455556666667653 24789999999999988764 678999999999999 777887777999999999999999
Q ss_pred ccccCch-hHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCC
Q 039262 574 QLFYFPL-VISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDG 651 (885)
Q Consensus 574 ~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (885)
.+..+|. .++++++|++|+|++|.+..+| ..++++++|++|++++|. +..++++.++++++|++|++.+|.+....
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~- 161 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALK- 161 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBC-
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccC-
Confidence 8888887 5999999999999999998887 579999999999999994 55555555889999999999988765421
Q ss_pred cccccchhhh--cCCCCccEEEEEeccc
Q 039262 652 IIREGELEEL--LGLKYLEVLSLTLNNS 677 (885)
Q Consensus 652 ~~~~~~~~~l--~~L~~L~~L~l~~~~~ 677 (885)
...+ ..+++|+.|+++.|..
T Consensus 162 ------~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 162 ------SEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp ------HHHHGGGTTCEESEEECTTCCC
T ss_pred ------HHHhhccccccccEEECCCCcc
Confidence 2222 2446677777766544
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=218.40 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=108.4
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 596 (885)
+++++++|.+..+|.... ++|++|++++| .+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 578999999998886333 89999999999 788888777999999999999999 77776 788999999999999999
Q ss_pred CccccchhhhccCCCcEEecCCcccccc--ccchhhcCCCCCcEEEeecccccC
Q 039262 597 NVAVLPKELNALVNLKCLNLENAWMLTV--IPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 597 ~i~~Lp~~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
+++.+|.. .+++|++|++++|. +.. +|.. ++++++|++|++.+|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred ceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccch
Confidence 99999987 89999999999995 554 5554 8999999999999987653
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=3.5e-20 Score=215.74 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=119.6
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~ 594 (885)
..++++++++.+..+|... .++|++|++++| .+..+++..|.++++|++|+|++| .++.+ |..++++++|++|+|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQN-SISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCC-CccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECC
Confidence 4488999999999888632 389999999999 788888777999999999999999 77776 6779999999999999
Q ss_pred CCCccccchhhhccCCCcEEecCCcccccccc-chhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEE
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIP-RRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLT 673 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 673 (885)
+|.+..+|.. .+++|++|++++| .+..+| +..++++++|++|++.++.+... .+..+..+ +|+.|+++
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~L-~L~~L~L~ 177 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------DLLPVAHL-HLSCILLD 177 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT-------TTGGGTTS-CEEEEEEE
T ss_pred CCcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccC-------chhhhhhc-eeeEEEee
Confidence 9999999987 8999999999999 566665 23489999999999999876542 23333333 34666666
Q ss_pred eccc
Q 039262 674 LNNS 677 (885)
Q Consensus 674 ~~~~ 677 (885)
.|..
T Consensus 178 ~n~l 181 (562)
T 3a79_B 178 LVSY 181 (562)
T ss_dssp ESSC
T ss_pred cccc
Confidence 5543
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=1e-20 Score=226.34 Aligned_cols=306 Identities=15% Similarity=0.158 Sum_probs=213.1
Q ss_pred cccceeEEEeecCCcc-cCCC-CCCCCCceeeeccCCcccc--ccCchh------hcCCCcccEEEecCCCccccCch--
Q 039262 513 KWEKVRRLSLMENQID-NLSG-VPTCPYLLTLFLNNNKQLL--IMDRGF------FQCMPRLKVLNLSGAKQLFYFPL-- 580 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~-~l~~-~~~~~~Lr~L~l~~~~~l~--~~~~~~------~~~l~~Lr~L~Ls~~~~i~~lp~-- 580 (885)
.++++++|.+.+|.+. .+|. +.++++|++|++++|..+. .+|..+ +..+++|++|+|++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChh
Confidence 6788999999988753 3443 5678889999998884244 355541 234458888888888 7778888
Q ss_pred hHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCC-CcEEEeecccccCCCCcccc----
Q 039262 581 VISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSS-LHVLRMFGIGYSSSDGIIRE---- 655 (885)
Q Consensus 581 ~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~---- 655 (885)
.++++++|++|+|++|.+..+| .++++++|++|++++| .+..+|.. +..+++ |++|++.+|.+.........
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred hhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccC
Confidence 8888888888888888888888 7888888888888888 45578866 777887 88888888765532110000
Q ss_pred -----------------cchhhhc--CCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccc---
Q 039262 656 -----------------GELEELL--GLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALA--- 713 (885)
Q Consensus 656 -----------------~~~~~l~--~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~--- 713 (885)
.....+. .+++|+.|+++.|.+..++..... ..++|+.|.|.++. +..++...+.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~--~l~~L~~L~Ls~N~-L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA--TGSPISTIILSNNL-MTSIPENSLKPKD 721 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHH--TTCCCSEEECCSCC-CSCCCTTSSSCTT
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHc--cCCCCCEEECCCCc-CCccChHHhcccc
Confidence 0001111 234677777777776655433221 23688999998864 4455543332
Q ss_pred ----cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEeccc----
Q 039262 714 ----DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCH---- 784 (885)
Q Consensus 714 ----~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~---- 784 (885)
++++|+.|++++|. +..++..+.. ..+++|+.|+|++| .+..+| .+..+++|+.|+|++|.
T Consensus 722 ~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~--------~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNK-LTSLSDDFRA--------TTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp SCCTTGGGCCEEECCSSC-CCCCCGGGST--------TTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTC
T ss_pred ccccccCCccEEECCCCC-CccchHHhhh--------ccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCccc
Confidence 34499999999984 4455433320 14899999999996 677776 58899999999998743
Q ss_pred --cccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCC
Q 039262 785 --GIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 785 --~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~ 846 (885)
....+| ..+..+++|+.|+|++|. +..+|... +++|+.|++++|+ +..++.
T Consensus 792 N~l~~~ip-------~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~LdLs~N~-l~~i~~ 844 (876)
T 4ecn_A 792 NRILRQWP-------TGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILDIADNP-NISIDV 844 (876)
T ss_dssp CBCCCCCC-------TTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEECCSCT-TCEEEC
T ss_pred ccccccCh-------HHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEECCCCC-CCccCh
Confidence 233333 367789999999999975 48877653 4899999999996 555543
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.85 E-value=8.3e-21 Score=228.95 Aligned_cols=283 Identities=22% Similarity=0.145 Sum_probs=150.8
Q ss_pred CCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc-cCchhHhccccCCEeecCCCCcc-ccchh-hhccCCC
Q 039262 535 TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF-YFPLVISKLVSLQHLDLSDTNVA-VLPKE-LNALVNL 611 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~-l~~L~~L 611 (885)
.+++|++|++++|.....+|..++..+++|++|+|++| .+. .+|..++++++|++|+|++|.+. .+|.. +.++++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 34444444444442111333333333344555555554 232 34444555555555555555443 44433 4445555
Q ss_pred cEEecCCccccccccchhhcCCC-CCcEEEeecccccCCCCcccccchhhhcC--CCCccEEEEEecccch-hhhhhccc
Q 039262 612 KCLNLENAWMLTVIPRRLISSFS-SLHVLRMFGIGYSSSDGIIREGELEELLG--LKYLEVLSLTLNNSRA-LHCVLSSH 687 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l~~--L~~L~~L~l~~~~~~~-~~~~~~~~ 687 (885)
++|++++|.....+|.. +..++ +|++|++.+|.+... .+..+.. +++|+.|+++.|.... ++...
T Consensus 346 ~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~~~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l--- 414 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFSGP-------ILPNLCQNPKNTLQELYLQNNGFTGKIPPTL--- 414 (768)
T ss_dssp CEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEEEE-------CCTTTTCSTTCCCCEEECCSSEEEEECCGGG---
T ss_pred CEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcCCC-------cChhhhhcccCCccEEECCCCccccccCHHH---
Confidence 55555554322244433 33333 455555544433221 1222222 4556666665554431 11111
Q ss_pred cccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC
Q 039262 688 RLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT 767 (885)
Q Consensus 688 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~ 767 (885)
...++|+.|++.++.-....+ ..+..+++|+.|++++|.....++ .... .+++|++|++++|.-...+|
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p-~~~~---------~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGEIP-QELM---------YVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCCSCCC-GGGG---------GCTTCCEEECCSSCCCSCCC
T ss_pred hcCCCCCEEECcCCcccCccc-HHHhcCCCCCEEECCCCcccCcCC-HHHc---------CCCCceEEEecCCcccCcCC
Confidence 123466666666543211222 245666777777777764433222 2222 47788888888864333444
Q ss_pred -ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCC
Q 039262 768 -FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 768 -~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~ 846 (885)
.++.+++|+.|+|++|.....+|. .++.+++|+.|+|+++.-...++.....+++|+.|++.+|+-...+|.
T Consensus 484 ~~l~~l~~L~~L~L~~N~l~~~~p~-------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 484 SGLSNCTNLNWISLSNNRLTGEIPK-------WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred HHHhcCCCCCEEEccCCccCCcCCh-------HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 477888888888888754434443 567788899999988766567776677788999999988865556775
Q ss_pred C
Q 039262 847 D 847 (885)
Q Consensus 847 ~ 847 (885)
.
T Consensus 557 ~ 557 (768)
T 3rgz_A 557 A 557 (768)
T ss_dssp G
T ss_pred H
Confidence 4
No 39
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=4.7e-21 Score=225.63 Aligned_cols=306 Identities=15% Similarity=0.176 Sum_probs=189.3
Q ss_pred cccceeEEEeecCCccc-CCC-CCCCCCceeeeccCCcccc--ccCchhhcCC------CcccEEEecCCCccccCch--
Q 039262 513 KWEKVRRLSLMENQIDN-LSG-VPTCPYLLTLFLNNNKQLL--IMDRGFFQCM------PRLKVLNLSGAKQLFYFPL-- 580 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~-l~~-~~~~~~Lr~L~l~~~~~l~--~~~~~~~~~l------~~Lr~L~Ls~~~~i~~lp~-- 580 (885)
.++++++|.+.+|.+.. +|. +.++++|++|++++|..+. .+|.. +..+ ++|++|+|++| .++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCC-cCCccCchh
Confidence 45666677776665432 332 4556666666666663133 24443 3332 56666666666 5556665
Q ss_pred hHhccccCCEeecCCCCcc-ccchhhhccCCCcEEecCCccccccccchhhcCCCC-CcEEEeecccccCCCCc------
Q 039262 581 VISKLVSLQHLDLSDTNVA-VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSS-LHVLRMFGIGYSSSDGI------ 652 (885)
Q Consensus 581 ~i~~L~~L~~L~L~~~~i~-~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~~~------ 652 (885)
.++++++|++|++++|.+. .+| .++.+++|++|++++| .+..+|.. +..+++ |++|++.+|.+......
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 5666666666666666665 566 5555566666666655 33455544 455555 55555555544321100
Q ss_pred ------------ccccchhhhc-------CCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccc
Q 039262 653 ------------IREGELEELL-------GLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALA 713 (885)
Q Consensus 653 ------------~~~~~~~~l~-------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 713 (885)
.....+..+. .+++|+.|+++.|.+..++..... ..++|+.|.+.++. +..++...+.
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~--~l~~L~~L~Ls~N~-l~~i~~~~~~ 478 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS--TGSPLSSINLMGNM-LTEIPKNSLK 478 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHH--TTCCCSEEECCSSC-CSBCCSSSSE
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHc--cCCCCCEEECCCCC-CCCcCHHHhc
Confidence 0001122233 566888888888877655442221 13689999998865 3455543333
Q ss_pred c-------CCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCCcceEeEeccc-
Q 039262 714 D-------LKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCH- 784 (885)
Q Consensus 714 ~-------l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~- 784 (885)
. +++|++|++++|.. ..++..+.. ..+++|+.|+|++| .++.+| .+..+++|+.|+|++|.
T Consensus 479 ~~~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~--------~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 479 DENENFKNTYLLTSIDLRFNKL-TKLSDDFRA--------TTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp ETTEECTTGGGCCEEECCSSCC-CBCCGGGST--------TTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBC
T ss_pred cccccccccCCccEEECcCCcC-CccChhhhh--------ccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcc
Confidence 3 33999999999854 455444330 14899999999996 566776 57899999999996543
Q ss_pred -----cccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCCC
Q 039262 785 -----GIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPLD 847 (885)
Q Consensus 785 -----~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~ 847 (885)
....++. .+..+++|+.|+|+++. ++.++... +++|+.|++++|+ +..++..
T Consensus 549 ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~L~Ls~N~-l~~~~~~ 605 (636)
T 4eco_A 549 AQGNRTLREWPE-------GITLCPSLTQLQIGSND-IRKVNEKI--TPNISVLDIKDNP-NISIDLS 605 (636)
T ss_dssp TTCCBCCCCCCT-------TGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCEEECCSCT-TCEEECT
T ss_pred cccCcccccChH-------HHhcCCCCCEEECCCCc-CCccCHhH--hCcCCEEECcCCC-CccccHH
Confidence 2333333 57789999999999965 47777653 4999999999995 6666543
No 40
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2.6e-20 Score=211.18 Aligned_cols=317 Identities=16% Similarity=0.175 Sum_probs=221.3
Q ss_pred EEEEcCCccCCC--CCcccccceeEEEeecCCcc-cCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecC
Q 039262 497 YLVYAGARLSEA--PDVRKWEKVRRLSLMENQID-NLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSG 571 (885)
Q Consensus 497 ~~~~~~~~~~~~--~~~~~~~~lr~L~l~~~~~~-~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~ 571 (885)
.+...+..+... .....++++++|++.+|.+. .++ .+..+++|++|++++| .+..+++..|.++++|++|+|++
T Consensus 34 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~ 112 (455)
T 3v47_A 34 YVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQ 112 (455)
T ss_dssp EEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEECTT
T ss_pred EEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEeCCC
Confidence 344444444433 23456789999999999875 343 3688999999999999 67777666689999999999999
Q ss_pred CCcccc-Cchh--HhccccCCEeecCCCCcccc-chh-hhccCCCcEEecCCccccccccchhhcCC-------------
Q 039262 572 AKQLFY-FPLV--ISKLVSLQHLDLSDTNVAVL-PKE-LNALVNLKCLNLENAWMLTVIPRRLISSF------------- 633 (885)
Q Consensus 572 ~~~i~~-lp~~--i~~L~~L~~L~L~~~~i~~L-p~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l------------- 633 (885)
| .++. .|.. ++.+++|++|+|++|.+..+ |.. +.++++|++|++++|. +..+++..+..+
T Consensus 113 n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 113 C-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp S-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred C-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccC
Confidence 9 6664 4554 88999999999999999887 554 8999999999999995 444433324333
Q ss_pred ---------------------CCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchh----------hh
Q 039262 634 ---------------------SSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRAL----------HC 682 (885)
Q Consensus 634 ---------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~----------~~ 682 (885)
++|++|++.+|.+.... ...+......++|+.|+++.+..... ..
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM----AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHH----HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccccchhhccccccccccccceeeeEecCCCcccccc----hhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 45666666665443210 01112223347888888876532210 00
Q ss_pred hhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCC
Q 039262 683 VLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNK 762 (885)
Q Consensus 683 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~ 762 (885)
.....-...+++.|.+.++. +.......+..+++|++|++++|. +..+.+.... .+++|++|+|++| .
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~L~Ls~N-~ 334 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFW---------GLTHLLKLNLSQN-F 334 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT---------TCTTCCEEECCSS-C
T ss_pred cccccccccCceEEEecCcc-ccccchhhcccCCCCCEEECCCCc-ccccChhHhc---------CcccCCEEECCCC-c
Confidence 00000112578999998864 334443467889999999999985 4444444443 4899999999996 5
Q ss_pred CCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCC-CCCCCCcceEEEccCC
Q 039262 763 LKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWK-PLPFPHLKEMKVIHCN 839 (885)
Q Consensus 763 l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~i~~c~ 839 (885)
++.++ .++.+++|++|+|++| .++.++. ..+..+++|+.|+++++ .++.++.. ...+++|++|++++||
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYN-HIRALGD------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSS-CCCEECT------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcChhHhcCcccCCEEECCCC-cccccCh------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 66664 4788999999999997 4555533 36788999999999984 67776654 3578999999999885
Q ss_pred C
Q 039262 840 K 840 (885)
Q Consensus 840 ~ 840 (885)
-
T Consensus 407 l 407 (455)
T 3v47_A 407 W 407 (455)
T ss_dssp B
T ss_pred c
Confidence 3
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=2.5e-20 Score=216.83 Aligned_cols=132 Identities=20% Similarity=0.301 Sum_probs=105.8
Q ss_pred cccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc--CchhHhccc
Q 039262 511 VRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY--FPLVISKLV 586 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~ 586 (885)
...++++++|++.+|.+..++. +..+++|++|++++| .+..+++..|.++++|++|+|++| .+.. .|..+++++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCT
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccC
Confidence 4567899999999999888753 688999999999999 788888887899999999999999 7774 467889999
Q ss_pred cCCEeecCCCC-ccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccc
Q 039262 587 SLQHLDLSDTN-VAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIG 645 (885)
Q Consensus 587 ~L~~L~L~~~~-i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 645 (885)
+|++|++++|. +..+| ..+.++++|++|++++|......|.. ++.+++|++|++..+.
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCc
Confidence 99999999997 78887 57889999999999988543334443 6666666666555443
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.7e-20 Score=201.89 Aligned_cols=86 Identities=24% Similarity=0.354 Sum_probs=78.1
Q ss_pred CCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEE
Q 039262 560 CMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVL 639 (885)
Q Consensus 560 ~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 639 (885)
...++++|+|++| .++.+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence 4578999999999 8999999999999999999999999999999999999999999999 56789876 8899999999
Q ss_pred EeecccccC
Q 039262 640 RMFGIGYSS 648 (885)
Q Consensus 640 ~l~~~~~~~ 648 (885)
++.+|....
T Consensus 156 ~L~~n~~~~ 164 (328)
T 4fcg_A 156 SIRACPELT 164 (328)
T ss_dssp EEEEETTCC
T ss_pred ECCCCCCcc
Confidence 999876543
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=221.56 Aligned_cols=175 Identities=15% Similarity=0.117 Sum_probs=135.4
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 596 (885)
+..+.+++++..+|. -.++|++|+|++| .+..+++..|.++++|++|+|++|..+..+ |..++++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 456677788888887 5589999999999 777887777999999999999999656666 788999999999999999
Q ss_pred Ccccc-chhhhccCCCcEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 597 NVAVL-PKELNALVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 597 ~i~~L-p~~l~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
.+..+ |..++++++|++|++++|.....+|. ..++++++|++|++.+|.+.... ....++++++|+.|+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~------~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY------LHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC------CCGGGGTCSSCCEEEEES
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc------cchhHhhCCCCCEEECCC
Confidence 99887 78899999999999999954443443 34789999999999998876532 235689999999999999
Q ss_pred cccchhhh-hhccccccccceeeEecCCC
Q 039262 675 NNSRALHC-VLSSHRLRSCTQALYLKDFK 702 (885)
Q Consensus 675 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~ 702 (885)
|....... ...... ..+|+.|.+.++.
T Consensus 158 N~i~~~~~~~l~~l~-~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQ-GKTLSFFSLAANS 185 (844)
T ss_dssp SCCCCCCSGGGHHHH-HCSSCCCEECCSB
T ss_pred CcCCeeCHHHccccc-CCccceEECCCCc
Confidence 87643211 100000 1356666666543
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.2e-19 Score=214.46 Aligned_cols=268 Identities=19% Similarity=0.201 Sum_probs=184.9
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 596 (885)
+.++.+++.+..+|... .+++++|++++| .+..+++..|.++++|++|+|++| .+..+ |..++++++|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 45777778888887532 279999999999 788888888999999999999999 66665 778999999999999999
Q ss_pred Cccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 597 NVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 597 ~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
.+..+|. .++++++|++|++++| .+..+|+..++++++|++|++.+|.+... .+..+..+++|+.|+++.|
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST-------KLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC-------CCCSSSCCTTCCEEECCSS
T ss_pred ccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc-------CchhhcccccCCEEEccCC
Confidence 9999996 5999999999999999 56778866689999999999999876542 3455788999999999988
Q ss_pred ccchhhhhhccccccccceeeEecCCCCCCcccccccccC---------------------------CCcceEeecccCc
Q 039262 676 NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADL---------------------------KHLKRLQIVECYE 728 (885)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~~ 728 (885)
...............++|+.|.+.++. +.......+..+ ++|++|++++|.
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~- 233 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ- 233 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC-
T ss_pred cccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc-
Confidence 765543321111112578888888753 333332233333 345555555542
Q ss_pred cceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCcc
Q 039262 729 LEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKL 806 (885)
Q Consensus 729 l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L 806 (885)
+....+.+.. ....++|+.|++++| .+..++ .++.+++|+.|++++|. +..++. ..+.++++|
T Consensus 234 l~~~~~~~~~-------~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~l~~L 298 (680)
T 1ziw_A 234 LSTTSNTTFL-------GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFS------HSLHGLFNV 298 (680)
T ss_dssp CCEECTTTTG-------GGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC-BSEECT------TTTTTCTTC
T ss_pred ccccChhHhh-------ccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCCc-cCccCh------hhhcCCCCc
Confidence 2222222221 001234788888775 344443 36677788888887753 333322 134445555
Q ss_pred ceeecCC
Q 039262 807 QYLGLSS 813 (885)
Q Consensus 807 ~~L~L~~ 813 (885)
+.|++++
T Consensus 299 ~~L~L~~ 305 (680)
T 1ziw_A 299 RYLNLKR 305 (680)
T ss_dssp CEEECTT
T ss_pred cEEeccc
Confidence 5555543
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.3e-20 Score=199.72 Aligned_cols=128 Identities=20% Similarity=0.339 Sum_probs=62.2
Q ss_pred ceeEEEeecCCccc---CC-CCCCCCCceeeeccC-CccccccCchhhcCCCcccEEEecCCCccc-cCchhHhccccCC
Q 039262 516 KVRRLSLMENQIDN---LS-GVPTCPYLLTLFLNN-NKQLLIMDRGFFQCMPRLKVLNLSGAKQLF-YFPLVISKLVSLQ 589 (885)
Q Consensus 516 ~lr~L~l~~~~~~~---l~-~~~~~~~Lr~L~l~~-~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~ 589 (885)
++++|++.++.+.. ++ .+..+++|++|++++ |.....+|.. |.++++|++|+|++| .+. .+|..++++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 45555555555542 22 234455555555553 3122233332 455555555555555 333 4555555555555
Q ss_pred EeecCCCCcc-ccchhhhccCCCcEEecCCccccccccchhhcCCC-CCcEEEeecccc
Q 039262 590 HLDLSDTNVA-VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFS-SLHVLRMFGIGY 646 (885)
Q Consensus 590 ~L~L~~~~i~-~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~-~L~~L~l~~~~~ 646 (885)
+|+|++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++.+|.+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCee
Confidence 5555555554 44555555555555555555322244443 44444 555555554443
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=197.73 Aligned_cols=148 Identities=22% Similarity=0.273 Sum_probs=83.1
Q ss_pred EEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCCCc
Q 039262 520 LSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDTNV 598 (885)
Q Consensus 520 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i 598 (885)
.+..++.+..+|.. -.++|++|++++| .+..++...|.++++|++|+|++| .++.+ |..++++++|++|+|++|.+
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence 44445555555431 2246666666666 455555545666666666666666 55544 34466666666666666666
Q ss_pred cccchh-hhccCCCcEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecc
Q 039262 599 AVLPKE-LNALVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNN 676 (885)
Q Consensus 599 ~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 676 (885)
..+|.. ++++++|++|++++| .+..+|. ..+..+++|++|++.+|..... .....+..+++|+.|+++.|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~------~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK------IQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE------ECTTTTTTCCEEEEEEEEETT
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc------cCHHHccCCCCCCEEECCCCC
Confidence 666644 566666666666666 4455554 3355666666666665531111 122345556666666666554
Q ss_pred c
Q 039262 677 S 677 (885)
Q Consensus 677 ~ 677 (885)
.
T Consensus 186 l 186 (353)
T 2z80_A 186 L 186 (353)
T ss_dssp C
T ss_pred c
Confidence 3
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.2e-19 Score=194.08 Aligned_cols=253 Identities=19% Similarity=0.180 Sum_probs=172.6
Q ss_pred CCceeeeccCCcccc---ccCchhhcCCCcccEEEecC-CCccccCchhHhccccCCEeecCCCCcc-ccchhhhccCCC
Q 039262 537 PYLLTLFLNNNKQLL---IMDRGFFQCMPRLKVLNLSG-AKQLFYFPLVISKLVSLQHLDLSDTNVA-VLPKELNALVNL 611 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~---~~~~~~~~~l~~Lr~L~Ls~-~~~i~~lp~~i~~L~~L~~L~L~~~~i~-~Lp~~l~~L~~L 611 (885)
.+++.|++++| .+. .+|.. |.++++|++|+|++ |.....+|..++++++|++|+|++|.+. .+|..+.++++|
T Consensus 50 ~~l~~L~L~~~-~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECC-CCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCC-CccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 57999999999 555 46654 88999999999995 6344479999999999999999999997 889999999999
Q ss_pred cEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCC-CccEEEEEecccch-hhhhhccccc
Q 039262 612 KCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLK-YLEVLSLTLNNSRA-LHCVLSSHRL 689 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~-~~~~~~~~~~ 689 (885)
++|++++|.....+|.. ++.+++|++|++.+|.+... .+..+..++ +|+.|+++.|.... .+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~~L~~L~L~~N~l~~~~~~------- 192 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------IPDSYGSFSKLFTSMTISRNRLTGKIPP------- 192 (313)
T ss_dssp CEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------CCGGGGCCCTTCCEEECCSSEEEEECCG-------
T ss_pred CEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-------CCHHHhhhhhcCcEEECcCCeeeccCCh-------
Confidence 99999999554467765 89999999999999877532 356678887 99999998776431 111
Q ss_pred cccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCcc
Q 039262 690 RSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFL 769 (885)
Q Consensus 690 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l 769 (885)
.+..++ |+.|++++|.. ....+.... .+++|+.|+++++.-...+|.+
T Consensus 193 ---------------------~~~~l~-L~~L~Ls~N~l-~~~~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~ 240 (313)
T 1ogq_A 193 ---------------------TFANLN-LAFVDLSRNML-EGDASVLFG---------SDKNTQKIHLAKNSLAFDLGKV 240 (313)
T ss_dssp ---------------------GGGGCC-CSEEECCSSEE-EECCGGGCC---------TTSCCSEEECCSSEECCBGGGC
T ss_pred ---------------------HHhCCc-ccEEECcCCcc-cCcCCHHHh---------cCCCCCEEECCCCceeeecCcc
Confidence 223333 66666666532 222222222 3566666666665322234445
Q ss_pred CCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCCCCCC
Q 039262 770 AFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLKKLPL 846 (885)
Q Consensus 770 ~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~~lp~ 846 (885)
..+++|++|+|++|.....++. .+..+++|+.|+++++.--..+|.. ..+++|+.|++.++|.+...|.
T Consensus 241 ~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 241 GLSKNLNGLDLRNNRIYGTLPQ-------GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp CCCTTCCEEECCSSCCEECCCG-------GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTS
T ss_pred cccCCCCEEECcCCcccCcCCh-------HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCC
Confidence 6666777777766532223332 4556667777777665433344443 4566677777766665555443
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=8.5e-19 Score=207.86 Aligned_cols=142 Identities=25% Similarity=0.327 Sum_probs=120.7
Q ss_pred EcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc
Q 039262 500 YAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY 577 (885)
Q Consensus 500 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~ 577 (885)
..+.+++.+|.. -+.++++|++++|.+..++. +.++++|++|+|++| .+..++++.|.++++|++|+|++| .++.
T Consensus 38 c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~ 114 (635)
T 4g8a_A 38 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQS 114 (635)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred CCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCC
Confidence 345566777652 34689999999999999864 689999999999999 888999888999999999999999 8888
Q ss_pred Cch-hHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCcccccc--ccchhhcCCCCCcEEEeecccc
Q 039262 578 FPL-VISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTV--IPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 578 lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|. .++++.+|++|+|++|++..+|. .+++|++|++|++++|. +.. +|. .++.+++|++|++.+|.+
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~-~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPE-YFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCG-GGGGCTTCCEEECCSSCC
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCch-hhccchhhhhhcccCccc
Confidence 875 58999999999999999999985 48999999999999994 444 344 478899999999988754
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=193.17 Aligned_cols=267 Identities=19% Similarity=0.218 Sum_probs=179.6
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+..++.+|. ...+++++|++.+|.+..++. +..+++|++|++++| .+..+++..|.++++|++|+|++| .
T Consensus 35 ~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp EEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-c
Confidence 34555666666665 234589999999998888765 678899999999998 777777777889999999999999 7
Q ss_pred cccCchh-HhccccCCEeecCCCCccccch--hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCC
Q 039262 575 LFYFPLV-ISKLVSLQHLDLSDTNVAVLPK--ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDG 651 (885)
Q Consensus 575 i~~lp~~-i~~L~~L~~L~L~~~~i~~Lp~--~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (885)
++.+|.. ++++++|++|++++|.+..+|. .+.++++|++|++++|..+..+++..++++++|++|++.+|.+...
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 8888876 8889999999999999998887 6888999999999998667777665688899999999988876542
Q ss_pred cccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccce
Q 039262 652 IIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEE 731 (885)
Q Consensus 652 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~ 731 (885)
....+..+++|+.|+++.+....++. ..+..+++|+.|++++|.. ..
T Consensus 190 -----~~~~l~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~~~~L~~L~L~~n~l-~~ 236 (353)
T 2z80_A 190 -----EPKSLKSIQNVSHLILHMKQHILLLE---------------------------IFVDVTSSVECLELRDTDL-DT 236 (353)
T ss_dssp -----CTTTTTTCSEEEEEEEECSCSTTHHH---------------------------HHHHHTTTEEEEEEESCBC-TT
T ss_pred -----CHHHHhccccCCeecCCCCccccchh---------------------------hhhhhcccccEEECCCCcc-cc
Confidence 34557777888888887665432221 1233457888888887743 22
Q ss_pred EEecccccccCCCcccccCcccEEEeccCCCCCC-----CC-ccCCCCCcceEeEeccccccccccccccccccCccCCc
Q 039262 732 LKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKD-----LT-FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAK 805 (885)
Q Consensus 732 l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~ 805 (885)
++...... ....+.++.++++++ .+.. +| .+..+++|+.|+|++| .++.++. ..+..+++
T Consensus 237 ~~~~~l~~------~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~------~~~~~l~~ 302 (353)
T 2z80_A 237 FHFSELST------GETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD------GIFDRLTS 302 (353)
T ss_dssp CCCC------------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT------TTTTTCTT
T ss_pred cccccccc------ccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH------HHHhcCCC
Confidence 21111110 112445555666553 2221 22 2445566666666554 3444433 12345555
Q ss_pred cceeecCCcc
Q 039262 806 LQYLGLSSLS 815 (885)
Q Consensus 806 L~~L~L~~~~ 815 (885)
|+.|++++++
T Consensus 303 L~~L~L~~N~ 312 (353)
T 2z80_A 303 LQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEeeCCC
Confidence 6666555543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=4.9e-19 Score=189.13 Aligned_cols=241 Identities=21% Similarity=0.249 Sum_probs=154.9
Q ss_pred EEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC---chhHhccccCCEeecCC
Q 039262 519 RLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF---PLVISKLVSLQHLDLSD 595 (885)
Q Consensus 519 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l---p~~i~~L~~L~~L~L~~ 595 (885)
.+...++.+..+|.. -.++|++|++++| .+..+|..+|.++++|++|+|++| .++.+ |..+..+++|++|+|++
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 456666667666652 2368899999988 677888887888999999999988 66654 67788889999999999
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|.+..+|..+..+++|++|++++| .+..++. ..+..+++|++|++.+|.+... ....+..+++|+.|+++.
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC-------STTTTTTCTTCCEEECTT
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc-------chhhcccCcCCCEEECCC
Confidence 998888888888999999999988 4566654 3477888888888887765431 233355666666666654
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
|.... ......+..+++|++|++++|. +..+.+.... .+++|++
T Consensus 160 n~l~~--------------------------~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~---------~l~~L~~ 203 (306)
T 2z66_A 160 NSFQE--------------------------NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN---------SLSSLQV 203 (306)
T ss_dssp CEEGG--------------------------GEECSCCTTCTTCCEEECTTSC-CCEECTTTTT---------TCTTCCE
T ss_pred Ccccc--------------------------ccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc---------CCCCCCE
Confidence 43221 0000134455666666666663 3333333332 3566666
Q ss_pred EEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCC-ccceeecCCc
Q 039262 755 IQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFA-KLQYLGLSSL 814 (885)
Q Consensus 755 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p-~L~~L~L~~~ 814 (885)
|+++++ .++.++ .+..+++|+.|+|++|. +...+. ..+..+| +|+.|+++++
T Consensus 204 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 204 LNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKK------QELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EECTTS-CCSBCCSGGGTTCTTCCEEECTTSC-CCBCSS------SSCCCCCTTCCEEECTTC
T ss_pred EECCCC-ccCccChhhccCcccCCEeECCCCC-CcccCH------HHHHhhhccCCEEEccCC
Confidence 666664 444443 24556666666666653 332221 1334443 5666666554
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.5e-18 Score=187.38 Aligned_cols=263 Identities=16% Similarity=0.171 Sum_probs=168.6
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCcccc-chhhhccCCCcEE
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVL-PKELNALVNLKCL 614 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~L-p~~l~~L~~L~~L 614 (885)
.++++++++++ .+..+|..+ .+.|++|+|++| .++.+|. .++++++|++|+|++|.+..+ |..+.++++|++|
T Consensus 31 c~l~~l~~~~~-~l~~lp~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDL-GLEKVPKDL---PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTS-CCCSCCCSC---CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCeEEEecCC-CccccCccC---CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 47899999998 788888753 368999999999 7888775 799999999999999999888 7889999999999
Q ss_pred ecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccce
Q 039262 615 NLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQ 694 (885)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 694 (885)
++++| .+..+|... .++|++|++.+|.+... ....+..+++|+.|+++.+...............++|+
T Consensus 106 ~Ls~n-~l~~l~~~~---~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 106 YLSKN-QLKELPEKM---PKTLQELRVHENEITKV-------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp ECCSS-CCSBCCSSC---CTTCCEEECCSSCCCBB-------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred ECCCC-cCCccChhh---cccccEEECCCCccccc-------CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 99999 578888752 37999999998876542 34568889999999998877643211111112234566
Q ss_pred eeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCC
Q 039262 695 ALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFA 772 (885)
Q Consensus 695 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l 772 (885)
.|.+.++. ++.++.. + .++|++|++++|. +..+.+.... .+++|++|+++++ .++.++ .+..+
T Consensus 175 ~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n~-l~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l 239 (330)
T 1xku_A 175 YIRIADTN-ITTIPQG-L--PPSLTELHLDGNK-ITKVDAASLK---------GLNNLAKLGLSFN-SISAVDNGSLANT 239 (330)
T ss_dssp EEECCSSC-CCSCCSS-C--CTTCSEEECTTSC-CCEECTGGGT---------TCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred EEECCCCc-cccCCcc-c--cccCCEEECCCCc-CCccCHHHhc---------CCCCCCEEECCCC-cCceeChhhccCC
Confidence 66665532 2222211 1 1556666666653 3322222222 3556666666664 344433 35556
Q ss_pred CCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCC-------CCCCcceEEEccCC
Q 039262 773 PNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPL-------PFPHLKEMKVIHCN 839 (885)
Q Consensus 773 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~-------~~p~L~~L~i~~c~ 839 (885)
++|++|+|++| .++.++. .+..+++|+.|+++++ .++.++.... ..++|+.|++.++|
T Consensus 240 ~~L~~L~L~~N-~l~~lp~-------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 240 PHLRELHLNNN-KLVKVPG-------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTCCEEECCSS-CCSSCCT-------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCEEECCCC-cCccCCh-------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 66666666664 3444433 3455566666666653 3343332111 13555666665554
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.6e-18 Score=205.40 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=105.1
Q ss_pred EEEEcCCccCCCC--CcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCC
Q 039262 497 YLVYAGARLSEAP--DVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGA 572 (885)
Q Consensus 497 ~~~~~~~~~~~~~--~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~ 572 (885)
.....+..++.++ ....++++++|++++|.+..++. +.++++|++|+|++| .+..+|+..|.++++|++|+|++|
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~N 134 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVET 134 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTTS
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCCC
Confidence 3444455555554 35677899999999999998864 688999999999999 788999988999999999999999
Q ss_pred CccccCch-hHhccccCCEeecCCCCccc--cchhhhccCCCcEEecCCccccccc
Q 039262 573 KQLFYFPL-VISKLVSLQHLDLSDTNVAV--LPKELNALVNLKCLNLENAWMLTVI 625 (885)
Q Consensus 573 ~~i~~lp~-~i~~L~~L~~L~L~~~~i~~--Lp~~l~~L~~L~~L~l~~~~~l~~l 625 (885)
.++.+|. .++++++|++|+|++|.+.. +|..++.+++|++|++++|. +..+
T Consensus 135 -~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 188 (635)
T 4g8a_A 135 -NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188 (635)
T ss_dssp -CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred -cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence 8888875 48999999999999999875 46888999999999999984 4433
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=9.3e-19 Score=197.78 Aligned_cols=221 Identities=20% Similarity=0.233 Sum_probs=113.0
Q ss_pred cceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEe
Q 039262 515 EKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHL 591 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L 591 (885)
+++++|++++|.+..++ .+.++++|+.|++++| .+..+++..|.++++|++|+|++| .++.+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 34555555555544432 2344555555555555 444444444555555555555555 44444432 4445555555
Q ss_pred ecCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEE
Q 039262 592 DLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVL 670 (885)
Q Consensus 592 ~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (885)
+|++|.+..+|. .+.++++|++|++++|..+..+|.+.+..+++|++|++.+|.+.. +..+..+++|+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~l~~L~~- 222 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD---------MPNLTPLVGLEE- 222 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---------CCCCTTCTTCCE-
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---------cccccccccccE-
Confidence 555555555442 344555555555555444444544444455555555555443322 112333333333
Q ss_pred EEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccC
Q 039262 671 SLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFH 750 (885)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (885)
|++.++. +..+....+..+++|+.|++++|. +..+.+.... .++
T Consensus 223 -------------------------L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---------~l~ 266 (452)
T 3zyi_A 223 -------------------------LEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFD---------GLA 266 (452)
T ss_dssp -------------------------EECTTSC-CSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTT---------TCT
T ss_pred -------------------------EECcCCc-CcccCcccccCccCCCEEEeCCCc-CceECHHHhc---------CCC
Confidence 3333321 222222356667777778777763 3333333332 367
Q ss_pred cccEEEeccCCCCCCCCc--cCCCCCcceEeEeccc
Q 039262 751 SLRKIQIDDCNKLKDLTF--LAFAPNLKSIEVNSCH 784 (885)
Q Consensus 751 ~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~ 784 (885)
+|+.|+|+++ +++.++. +..+++|+.|+|++|+
T Consensus 267 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 7778888774 5666653 5667777777777764
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.79 E-value=1.4e-18 Score=196.40 Aligned_cols=242 Identities=18% Similarity=0.193 Sum_probs=190.2
Q ss_pred eeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCC
Q 039262 517 VRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSD 595 (885)
Q Consensus 517 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~ 595 (885)
.+.+...++.+..+|.. -.++|++|++++| .+..+++..|.++++|++|+|++| .+..++ ..+.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQG-IPSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCC-CCCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 45667777777777652 2378999999999 788887777999999999999999 777765 6799999999999999
Q ss_pred CCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|.+..+|.. +..+++|++|++++| .+..+|...+.++++|++|++.++..... .....+..+++|+.|+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~------i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY------ISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE------ECTTTTTTCTTCCEEECTT
T ss_pred CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc------cChhhccCCCCCCEEECCC
Confidence 999999865 889999999999999 57888887789999999999988543321 1233467788888888765
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
|.+.. ++ .+..+++|++|++++|. +..+.+.... .+++|+.
T Consensus 206 n~l~~---------------------------~~--~~~~l~~L~~L~Ls~N~-l~~~~~~~~~---------~l~~L~~ 246 (452)
T 3zyi_A 206 CNIKD---------------------------MP--NLTPLVGLEELEMSGNH-FPEIRPGSFH---------GLSSLKK 246 (452)
T ss_dssp SCCSS---------------------------CC--CCTTCTTCCEEECTTSC-CSEECGGGGT---------TCTTCCE
T ss_pred Ccccc---------------------------cc--cccccccccEEECcCCc-CcccCccccc---------CccCCCE
Confidence 54321 11 35667899999999985 4444444443 4889999
Q ss_pred EEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcc
Q 039262 755 IQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 755 L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
|+|+++ .+..++ .+..+++|+.|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 247 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 247 LWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPH------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT------TSSTTCTTCCEEECCSSC
T ss_pred EEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccCh------HHhccccCCCEEEccCCC
Confidence 999996 566653 4788999999999996 6777665 356789999999999865
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=3.5e-18 Score=197.88 Aligned_cols=253 Identities=21% Similarity=0.198 Sum_probs=162.8
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
..+...+..++.+|... .++++.|.+.+|.+..+|. .+++|++|++++| .+..+|. .+++|++|+|++| .+
T Consensus 43 ~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CEEECCSSCCSCCCSCC-CTTCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCTTCCEEEECSC-CC
T ss_pred cEEEecCCCcCccChhh-CCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCCCCCEEECcCC-cC
Confidence 34555555666655422 2577788888777777765 5677888888777 5666665 5677788888777 67
Q ss_pred ccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccc
Q 039262 576 FYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIRE 655 (885)
Q Consensus 576 ~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 655 (885)
+.+|. .+.+|++|++++|++..+|.. +++|++|++++| .+..+|. .+++|+.|++.+|.+...
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l------ 176 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSL------ 176 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC------
T ss_pred CCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCC------
Confidence 77775 567777888888777777753 477778888777 5566664 345677777777655431
Q ss_pred cchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEec
Q 039262 656 GELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMD 735 (885)
Q Consensus 656 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~ 735 (885)
. ..+++|+.|+++.|.+..++.. .++|+.|.+.++. ++.++. .+++|+.|++++| .+..++
T Consensus 177 ---~--~~~~~L~~L~Ls~N~l~~l~~~------~~~L~~L~L~~N~-l~~l~~----~~~~L~~L~Ls~N-~L~~lp-- 237 (622)
T 3g06_A 177 ---P--MLPSGLQELSVSDNQLASLPTL------PSELYKLWAYNNR-LTSLPA----LPSGLKELIVSGN-RLTSLP-- 237 (622)
T ss_dssp ---C--CCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSC-CSSCCC----CCTTCCEEECCSS-CCSCCC--
T ss_pred ---c--ccCCCCcEEECCCCCCCCCCCc------cchhhEEECcCCc-ccccCC----CCCCCCEEEccCC-ccCcCC--
Confidence 1 3456777777777766544332 2467777776643 333321 2367777777776 333222
Q ss_pred ccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcc
Q 039262 736 YTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 736 ~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
. .+++|+.|+|++| .++.+|. .+++|+.|+|++| .++.+|. .+..+++|+.|+|++++
T Consensus 238 --~---------~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~-------~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 --V---------LPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPE-------SLIHLSSETTVNLEGNP 295 (622)
T ss_dssp --C---------CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCG-------GGGGSCTTCEEECCSCC
T ss_pred --C---------CCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCH-------HHhhccccCEEEecCCC
Confidence 1 3567777777774 5666665 5677777777775 4555554 45667777777777754
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.79 E-value=1.7e-18 Score=187.16 Aligned_cols=280 Identities=17% Similarity=0.200 Sum_probs=205.9
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
+...+..+..+|.. ..++++.|++.+|.+..++. +..+++|++|++++| .+..+++..|.++++|++|+|++| .+
T Consensus 38 l~~~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 38 VQCSDLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp EECCSSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS-CC
T ss_pred EECCCCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC-cC
Confidence 44445556666542 24689999999999988743 789999999999999 787887777999999999999999 89
Q ss_pred ccCchhHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCcccccc--ccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 576 FYFPLVISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTV--IPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 576 ~~lp~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
+.+|..+. ++|++|++++|.+..+|. .+..+++|++|++++|. +.. +++..+..+ +|++|++.+|.+....
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-- 188 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIP-- 188 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC--
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccC--
Confidence 99998765 899999999999999985 48999999999999994 432 333346677 9999999988765422
Q ss_pred ccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceE
Q 039262 653 IREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEEL 732 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 732 (885)
..+ .++|+.|+++.|.+..+... .....++|+.|.+.++. +..++...+..+++|++|++++|. +..+
T Consensus 189 ------~~~--~~~L~~L~l~~n~i~~~~~~--~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 256 (332)
T 2ft3_A 189 ------KDL--PETLNELHLDHNKIQAIELE--DLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRV 256 (332)
T ss_dssp ------SSS--CSSCSCCBCCSSCCCCCCTT--SSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSC-CCBC
T ss_pred ------ccc--cCCCCEEECCCCcCCccCHH--HhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCc-Ceec
Confidence 111 26888899998877654321 11223688999998754 444544467889999999999984 4444
Q ss_pred EecccccccCCCcccccCcccEEEeccCCCCCCCCc--cC------CCCCcceEeEecccccc-ccccccccccccCccC
Q 039262 733 KMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF--LA------FAPNLKSIEVNSCHGIQ-EIVSDVPEVMRNLNLF 803 (885)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~------~l~~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~~ 803 (885)
+.. .. .+++|+.|+++++ .++.++. +. ..++|+.|++.+++... .+.. ..+..+
T Consensus 257 p~~-l~---------~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~------~~~~~l 319 (332)
T 2ft3_A 257 PAG-LP---------DLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP------ATFRCV 319 (332)
T ss_dssp CTT-GG---------GCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG------GGGTTB
T ss_pred Chh-hh---------cCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCc------cccccc
Confidence 333 32 4899999999995 6777753 22 25789999999976321 2222 357778
Q ss_pred CccceeecCCcc
Q 039262 804 AKLQYLGLSSLS 815 (885)
Q Consensus 804 p~L~~L~L~~~~ 815 (885)
++|+.|+++++.
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999998764
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.79 E-value=1.8e-18 Score=194.61 Aligned_cols=221 Identities=21% Similarity=0.278 Sum_probs=115.9
Q ss_pred cceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEe
Q 039262 515 EKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHL 591 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L 591 (885)
++++.|++++|.+..++ .+.++++|++|++++| .+..++...|.++++|++|+|++| .++.+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 34455555555444432 2344455555555555 344444444555555555555555 4444443 24445555555
Q ss_pred ecCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEE
Q 039262 592 DLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVL 670 (885)
Q Consensus 592 ~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (885)
+|++|.+..+|. .+.++++|++|++++|..+..+|.+.+.++++|++|++.+|.+.. +..+..++
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~l~----- 207 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE---------IPNLTPLI----- 207 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS---------CCCCTTCS-----
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc---------ccccCCCc-----
Confidence 555555544442 344555555555555444444444444455555555554443321 11233333
Q ss_pred EEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccC
Q 039262 671 SLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFH 750 (885)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (885)
+|+.|+|.++ .+..+....+..+++|++|++++|. +..+.+.... .++
T Consensus 208 ---------------------~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---------~l~ 255 (440)
T 3zyj_A 208 ---------------------KLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFD---------NLQ 255 (440)
T ss_dssp ---------------------SCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSST---------TCT
T ss_pred ---------------------ccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeEEChhhhc---------CCC
Confidence 4444444443 2333333456677888888888773 4444443333 477
Q ss_pred cccEEEeccCCCCCCCCc--cCCCCCcceEeEeccc
Q 039262 751 SLRKIQIDDCNKLKDLTF--LAFAPNLKSIEVNSCH 784 (885)
Q Consensus 751 ~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~ 784 (885)
+|+.|+|+++ +++.++. +..+++|+.|+|++|+
T Consensus 256 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 256 SLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8888888884 6676653 5677888888887765
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=1.9e-17 Score=191.81 Aligned_cols=255 Identities=20% Similarity=0.155 Sum_probs=206.3
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
+++.|++.+|.+..+|.... ++|++|++++| .+..+|. .+++|++|+|++| .++.+|. .+++|++|+|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 58899999999998876333 89999999999 7888876 5789999999999 8999997 789999999999
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
|++..+|. .+.+|++|++++| .+..+|.. +++|++|++.+|.+.... ..+++|+.|+++.|
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~-----------~~~~~L~~L~L~~N 171 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP-----------ALPSELCKLWAYNN 171 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC-----------CCCTTCCEEECCSS
T ss_pred CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC-----------CccCCCCEEECCCC
Confidence 99999997 6789999999999 67888863 589999999998765421 13468899999998
Q ss_pred ccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEE
Q 039262 676 NSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKI 755 (885)
Q Consensus 676 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L 755 (885)
.+..++ ...++|+.|.+.++. +..++. .+++|+.|++++|. +..++ ..+++|+.|
T Consensus 172 ~l~~l~------~~~~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~-l~~l~-------------~~~~~L~~L 226 (622)
T 3g06_A 172 QLTSLP------MLPSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNNR-LTSLP-------------ALPSGLKEL 226 (622)
T ss_dssp CCSCCC------CCCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC-CSSCC-------------CCCTTCCEE
T ss_pred CCCCCc------ccCCCCcEEECCCCC-CCCCCC----ccchhhEEECcCCc-ccccC-------------CCCCCCCEE
Confidence 877655 224689999998854 444432 24799999999884 33321 136899999
Q ss_pred EeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEE
Q 039262 756 QIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKV 835 (885)
Q Consensus 756 ~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i 835 (885)
++++| .++.+| ..+++|+.|+|++| .++.++. .+++|+.|+|+++ .++.++.....+++|+.|++
T Consensus 227 ~Ls~N-~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~----------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 227 IVSGN-RLTSLP--VLPSELKELMVSGN-RLTSLPM----------LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL 291 (622)
T ss_dssp ECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC----------CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC
T ss_pred EccCC-ccCcCC--CCCCcCcEEECCCC-CCCcCCc----------ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe
Confidence 99996 788887 67799999999996 5666542 5689999999986 67788877778999999999
Q ss_pred ccCC
Q 039262 836 IHCN 839 (885)
Q Consensus 836 ~~c~ 839 (885)
.+|+
T Consensus 292 ~~N~ 295 (622)
T 3g06_A 292 EGNP 295 (622)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9985
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=4.7e-18 Score=181.50 Aligned_cols=243 Identities=18% Similarity=0.202 Sum_probs=184.4
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCCCCcccc---chhhhccCCCcEEe
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSDTNVAVL---PKELNALVNLKCLN 615 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i~~L---p~~l~~L~~L~~L~ 615 (885)
+.++++++ .+..+|..+ .++|++|+|++| .++.+|.. +.++++|++|+|++|.+..+ |..+..+++|++|+
T Consensus 10 ~~l~c~~~-~l~~ip~~~---~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSK-GLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSS-CCSSCCSCC---CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCC-CcccCCCCC---CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 46788877 788888754 368999999999 88899876 68999999999999998766 67788899999999
Q ss_pred cCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhcccccccccee
Q 039262 616 LENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQA 695 (885)
Q Consensus 616 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 695 (885)
+++| .+..+|.. +..+++|++|++.+|.+.... ....+..+++|+.|+++.+....
T Consensus 85 Ls~n-~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~------~~~~~~~l~~L~~L~l~~n~l~~---------------- 140 (306)
T 2z66_A 85 LSFN-GVITMSSN-FLGLEQLEHLDFQHSNLKQMS------EFSVFLSLRNLIYLDISHTHTRV---------------- 140 (306)
T ss_dssp CCSC-SEEEEEEE-EETCTTCCEEECTTSEEESST------TTTTTTTCTTCCEEECTTSCCEE----------------
T ss_pred CCCC-ccccChhh-cCCCCCCCEEECCCCcccccc------cchhhhhccCCCEEECCCCcCCc----------------
Confidence 9999 56778876 789999999999988765432 22456777788877776544321
Q ss_pred eEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCC
Q 039262 696 LYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAP 773 (885)
Q Consensus 696 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~ 773 (885)
.....+..+++|++|++++|.......+.... .+++|++|++++| .++.++ .+..++
T Consensus 141 -----------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 141 -----------AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLS 199 (306)
T ss_dssp -----------CSTTTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred -----------cchhhcccCcCCCEEECCCCccccccchhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCC
Confidence 11124667889999999998544323344433 4899999999996 566653 478899
Q ss_pred CcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCC-CcceEEEccCC
Q 039262 774 NLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFP-HLKEMKVIHCN 839 (885)
Q Consensus 774 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p-~L~~L~i~~c~ 839 (885)
+|+.|++++| .++.++. ..+..+++|+.|+++++.-....+.....+| +|++|++.+++
T Consensus 200 ~L~~L~L~~N-~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 200 SLQVLNMSHN-NFFSLDT------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCCEEECTTS-CCSBCCS------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCEEECCCC-ccCccCh------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 9999999996 4555543 2467899999999999754444444555675 89999998875
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.77 E-value=3.2e-19 Score=191.35 Aligned_cols=269 Identities=16% Similarity=0.121 Sum_probs=151.5
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcE
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKC 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~ 613 (885)
..+++|+.|++++| .+..+++..|.++++|++|+|++| .+...+. +..+++|++|++++|.+..+|. +++|++
T Consensus 31 ~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred ccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCE
Confidence 34567777777777 566666555777777777777777 5655553 6777777777777777766652 367777
Q ss_pred EecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccc
Q 039262 614 LNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCT 693 (885)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 693 (885)
|++++| .+..++. ..+++|++|++.+|.+... ....+..+++|+.|+++.|.+......... ...++|
T Consensus 104 L~l~~n-~l~~~~~---~~~~~L~~L~l~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~l~~L 171 (317)
T 3o53_A 104 LHAANN-NISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDTVNFAELA-ASSDTL 171 (317)
T ss_dssp EECCSS-CCSEEEE---CCCSSCEEEECCSSCCCSG-------GGBCTGGGSSEEEEECTTSCCCEEEGGGGG-GGTTTC
T ss_pred EECCCC-ccCCcCc---cccCCCCEEECCCCCCCCc-------cchhhhccCCCCEEECCCCCCCcccHHHHh-hccCcC
Confidence 777777 4455553 3466777777777665431 122345566677777666655432211000 012455
Q ss_pred eeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCC
Q 039262 694 QALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFA 772 (885)
Q Consensus 694 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l 772 (885)
+.|.+.++. ++.++ ....+++|++|++++|. +..+++.+. .+++|+.|+++++ .++.+| .+..+
T Consensus 172 ~~L~L~~N~-l~~~~--~~~~l~~L~~L~Ls~N~-l~~l~~~~~----------~l~~L~~L~L~~N-~l~~l~~~~~~l 236 (317)
T 3o53_A 172 EHLNLQYNF-IYDVK--GQVVFAKLKTLDLSSNK-LAFMGPEFQ----------SAAGVTWISLRNN-KLVLIEKALRFS 236 (317)
T ss_dssp CEEECTTSC-CCEEE--CCCCCTTCCEEECCSSC-CCEECGGGG----------GGTTCSEEECTTS-CCCEECTTCCCC
T ss_pred CEEECCCCc-Ccccc--cccccccCCEEECCCCc-CCcchhhhc----------ccCcccEEECcCC-cccchhhHhhcC
Confidence 666665543 22222 22335677777777663 333433322 3667777777764 455554 35566
Q ss_pred CCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEccCCCCC
Q 039262 773 PNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVIHCNKLK 842 (885)
Q Consensus 773 ~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~~c~~L~ 842 (885)
++|+.|++++|+....... ..+..+++|+.|++.+++.++.........+.+....-..|..+.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~------~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~ 300 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLR------DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300 (317)
T ss_dssp TTCCEEECTTCCCBHHHHH------HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred CCCCEEEccCCCccCcCHH------HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence 7777777766543211111 234556677777776666555543333333444443334455443
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=3.5e-17 Score=183.87 Aligned_cols=178 Identities=25% Similarity=0.272 Sum_probs=91.9
Q ss_pred cceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 515 EKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
.++++|++.+|.+..++... ++|++|++++| .+..+|. |.++++|++|++++| .++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n-~l~~lp~--~~~l~~L~~L~l~~N-~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN-QLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSCC--TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCCC--CCCCEEECcCC-CCCCCcc--cCCCCCCCEEECCCC-cCcccCCCc---ccccEEECc
Confidence 34555555555444443221 45555555555 4444442 555555555555555 455555332 355555555
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
+|.+..+| .++++++|++|++++| .+..+|.. .++|++|++.+|.+.. +..+..+++|+.|+++.
T Consensus 182 ~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n~l~~---------lp~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 182 NNQLEELP-ELQNLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNNILEE---------LPELQNLPFLTTIYADN 246 (454)
T ss_dssp SSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSSCCSS---------CCCCTTCTTCCEEECCS
T ss_pred CCcCCcCc-cccCCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCCcCCc---------ccccCCCCCCCEEECCC
Confidence 55555555 3555555555555555 33444431 1355555555554331 22366677777777777
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccC
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECY 727 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 727 (885)
|....++.. ..+++.|.+.++. +..++. .+++|+.|++++|.
T Consensus 247 N~l~~l~~~------~~~L~~L~l~~N~-l~~l~~----~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 247 NLLKTLPDL------PPSLEALNVRDNY-LTDLPE----LPQSLTFLDVSENI 288 (454)
T ss_dssp SCCSSCCSC------CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSC
T ss_pred CcCCccccc------ccccCEEECCCCc-ccccCc----ccCcCCEEECcCCc
Confidence 766544321 2467777776643 222221 12567777776663
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=190.49 Aligned_cols=156 Identities=25% Similarity=0.349 Sum_probs=133.4
Q ss_pred cccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhcccc
Q 039262 511 VRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVS 587 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~ 587 (885)
...+++++.|++.+|.+..++ .+..+++|++|++++| .+..++...|..+++|++|+|++| .+..+|. .+.++++
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~ 161 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPS 161 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTT
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcc
Confidence 456789999999999988775 3678999999999999 788999888999999999999999 7887765 6889999
Q ss_pred CCEeecCCC-Cccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCC
Q 039262 588 LQHLDLSDT-NVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLK 665 (885)
Q Consensus 588 L~~L~L~~~-~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 665 (885)
|++|+|++| .+..+|. .+.++++|++|++++| .+..+|. +..+++|++|++.+|.+... ....+..++
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~ 231 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGNHLSAI-------RPGSFQGLM 231 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTSCCCEE-------CTTTTTTCT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCCccCcc-------ChhhhccCc
Confidence 999999995 7788875 6899999999999999 6788986 88999999999999876542 345677888
Q ss_pred CccEEEEEecccc
Q 039262 666 YLEVLSLTLNNSR 678 (885)
Q Consensus 666 ~L~~L~l~~~~~~ 678 (885)
+|+.|+++.|.+.
T Consensus 232 ~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 232 HLQKLWMIQSQIQ 244 (440)
T ss_dssp TCCEEECTTCCCC
T ss_pred cCCEEECCCCcee
Confidence 8888888766554
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=3.1e-17 Score=184.37 Aligned_cols=281 Identities=19% Similarity=0.189 Sum_probs=193.8
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF 576 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~ 576 (885)
.+...+..+..++.. .+++++|.+.+|.+..+|.+..+++|++|++++| .+..+|.. ..+|++|++++| .++
T Consensus 115 ~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~ 186 (454)
T 1jl5_A 115 SLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLE 186 (454)
T ss_dssp EEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCS
T ss_pred EEECCCCccCcccCC--CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCC
Confidence 333444444444332 2689999999999999998999999999999999 67777653 368999999999 888
Q ss_pred cCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCccccc
Q 039262 577 YFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREG 656 (885)
Q Consensus 577 ~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 656 (885)
.+| .++++++|++|++++|.+..+|... .+|++|++++| .+..+|. ++.+++|++|++.+|.+....
T Consensus 187 ~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~------ 253 (454)
T 1jl5_A 187 ELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLP------ 253 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC------
T ss_pred cCc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccc------
Confidence 898 6999999999999999999888643 58999999999 5678985 889999999999988765421
Q ss_pred chhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecc
Q 039262 657 ELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDY 736 (885)
Q Consensus 657 ~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 736 (885)
..+++|+.|+++.|....++.. ..+++.|.+.++. +..++ .+ .++|+.|++++|. +..++
T Consensus 254 -----~~~~~L~~L~l~~N~l~~l~~~------~~~L~~L~ls~N~-l~~l~--~~--~~~L~~L~l~~N~-l~~i~--- 313 (454)
T 1jl5_A 254 -----DLPPSLEALNVRDNYLTDLPEL------PQSLTFLDVSENI-FSGLS--EL--PPNLYYLNASSNE-IRSLC--- 313 (454)
T ss_dssp -----SCCTTCCEEECCSSCCSCCCCC------CTTCCEEECCSSC-CSEES--CC--CTTCCEEECCSSC-CSEEC---
T ss_pred -----ccccccCEEECCCCcccccCcc------cCcCCEEECcCCc-cCccc--Cc--CCcCCEEECcCCc-CCccc---
Confidence 1247899999998887665432 2578899988754 33332 12 2689999998874 33221
Q ss_pred cccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCccc
Q 039262 737 TGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSN 816 (885)
Q Consensus 737 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~ 816 (885)
. .+++|++|+++++ .+..+|.. +++|+.|++++| .++.++. .+++|+.|+++++.-
T Consensus 314 -~---------~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N-~l~~lp~----------~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 314 -D---------LPPSLEELNVSNN-KLIELPAL--PPRLERLIASFN-HLAEVPE----------LPQNLKQLHVEYNPL 369 (454)
T ss_dssp -C---------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCC----------CCTTCCEEECCSSCC
T ss_pred -C---------CcCcCCEEECCCC-cccccccc--CCcCCEEECCCC-ccccccc----------hhhhccEEECCCCCC
Confidence 1 2358889999885 57667643 688899999886 4555432 367888888887543
Q ss_pred cc--ccCCCCCCC-------------CCcceEEEccCCCCCC
Q 039262 817 FQ--SIYWKPLPF-------------PHLKEMKVIHCNKLKK 843 (885)
Q Consensus 817 l~--~i~~~~~~~-------------p~L~~L~i~~c~~L~~ 843 (885)
.. .+|.....+ ++|+.|++++++ ++.
T Consensus 370 ~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~ 410 (454)
T 1jl5_A 370 REFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LRE 410 (454)
T ss_dssp SSCCCCCTTCCEEECCC-------------------------
T ss_pred CcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCc
Confidence 22 333333323 789999998874 553
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.3e-18 Score=182.50 Aligned_cols=268 Identities=18% Similarity=0.117 Sum_probs=192.0
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCCCccccchhhhccCCCcEEec
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNL 616 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l 616 (885)
.++.++++++ .+...+...+..+++|++|+|++| .++.++ ..++.+++|++|+|++|.+..++. +..+++|++|++
T Consensus 11 ~l~i~~ls~~-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTT-THHHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEEC
T ss_pred ceeEeecccc-chhhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEEC
Confidence 4566677776 566667777888999999999999 777765 689999999999999999987775 899999999999
Q ss_pred CCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceee
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQAL 696 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 696 (885)
++| .+..+|. .++|++|++.+|.+.... ...+++|+.|+++.|.+..+..... ...++|+.|
T Consensus 88 s~n-~l~~l~~-----~~~L~~L~l~~n~l~~~~----------~~~~~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L 149 (317)
T 3o53_A 88 NNN-YVQELLV-----GPSIETLHAANNNISRVS----------CSRGQGKKNIYLANNKITMLRDLDE--GCRSRVQYL 149 (317)
T ss_dssp CSS-EEEEEEE-----CTTCCEEECCSSCCSEEE----------ECCCSSCEEEECCSSCCCSGGGBCT--GGGSSEEEE
T ss_pred cCC-ccccccC-----CCCcCEEECCCCccCCcC----------ccccCCCCEEECCCCCCCCccchhh--hccCCCCEE
Confidence 999 5666653 389999999988765421 2346789999999888766543221 223678888
Q ss_pred EecCCCCCCccccccc-ccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCCCCC
Q 039262 697 YLKDFKSSKSLDVSAL-ADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAFAPN 774 (885)
Q Consensus 697 ~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~l~~ 774 (885)
.+.++. +.......+ ..+++|++|++++|. +..+ +... .+++|+.|+|++| .++.+| .+..+++
T Consensus 150 ~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~----------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 150 DLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV-KGQV----------VFAKLKTLDLSSN-KLAFMGPEFQSAAG 215 (317)
T ss_dssp ECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE-ECCC----------CCTTCCEEECCSS-CCCEECGGGGGGTT
T ss_pred ECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc-cccc----------ccccCCEEECCCC-cCCcchhhhcccCc
Confidence 888754 333333333 467888888888874 4433 2221 3778888888885 566664 4677888
Q ss_pred cceEeEeccccccccccccccccccCccCCccceeecCCcccc-cccCCCCCCCCCcceEEEccCCCCCCCCCCC
Q 039262 775 LKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNF-QSIYWKPLPFPHLKEMKVIHCNKLKKLPLDS 848 (885)
Q Consensus 775 L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l-~~i~~~~~~~p~L~~L~i~~c~~L~~lp~~~ 848 (885)
|+.|++++| .++.++. .+..+++|+.|++++++-. ..++.....+++|+.|++.+|+.++..+...
T Consensus 216 L~~L~L~~N-~l~~l~~-------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 216 VTWISLRNN-KLVLIEK-------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp CSEEECTTS-CCCEECT-------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ccEEECcCC-cccchhh-------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 888888885 5666654 4667788888888886544 2333334457888888888777666554433
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=2.4e-17 Score=173.93 Aligned_cols=219 Identities=20% Similarity=0.192 Sum_probs=160.0
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~ 596 (885)
+.++..++.+..+|. .-.++|+.|++++| .+..++...|..+++|++|+|++| .++.+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 456666777777664 23468899999988 677787777888999999999988 67665 677888899999999998
Q ss_pred C-cccc-chhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 597 N-VAVL-PKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 597 ~-i~~L-p~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
. +..+ |..+..+++|++|++++| .+..+++..+..+++|++|++.+|.+... ....+..+++|+.|+++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~ 162 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL-------PDDTFRDLGNLTHLFLHG 162 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------CTTTTTTCTTCCEEECCS
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc-------CHhHhccCCCccEEECCC
Confidence 6 8887 567888899999999988 45666655578888999998888766542 223356677777777765
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
|.+. .++...+..+++|++|++++|. +..+.+.... .+++|+.
T Consensus 163 n~l~---------------------------~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~---------~l~~L~~ 205 (285)
T 1ozn_A 163 NRIS---------------------------SVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFR---------DLGRLMT 205 (285)
T ss_dssp SCCC---------------------------EECTTTTTTCTTCCEEECCSSC-CCEECTTTTT---------TCTTCCE
T ss_pred Cccc---------------------------ccCHHHhcCccccCEEECCCCc-ccccCHhHcc---------CcccccE
Confidence 5432 1222246667888888888874 4433344433 4788999
Q ss_pred EEeccCCCCCCCCc--cCCCCCcceEeEecccc
Q 039262 755 IQIDDCNKLKDLTF--LAFAPNLKSIEVNSCHG 785 (885)
Q Consensus 755 L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~ 785 (885)
|+++++ .++.++. +..+++|+.|+|++++-
T Consensus 206 L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 206 LYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred eeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 999885 6777763 77888999999988754
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=8.6e-18 Score=177.40 Aligned_cols=217 Identities=24% Similarity=0.302 Sum_probs=167.1
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
+...+.+++.+|. ..++++++|++.+|.+..++. +..+++|++|++++| .+..+++..|..+++|++|+|++|..+
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 16 TSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred EEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 3344555666654 345799999999999988764 688999999999999 777887667999999999999999437
Q ss_pred ccC-chhHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcc
Q 039262 576 FYF-PLVISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGII 653 (885)
Q Consensus 576 ~~l-p~~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 653 (885)
+.+ |..+..+++|++|++++|.+..++ ..+.++++|++|++++| .+..+|...++.+++|++|++.+|.+...
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---- 168 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSV---- 168 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEE----
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccccc----
Confidence 777 778999999999999999998884 66899999999999999 56788877688999999999999876542
Q ss_pred cccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEE
Q 039262 654 REGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELK 733 (885)
Q Consensus 654 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~ 733 (885)
....+..+++|+.|+++.|.+... ....+..+++|++|++++|. +..++
T Consensus 169 ---~~~~~~~l~~L~~L~l~~n~l~~~---------------------------~~~~~~~l~~L~~L~l~~n~-l~~~~ 217 (285)
T 1ozn_A 169 ---PERAFRGLHSLDRLLLHQNRVAHV---------------------------HPHAFRDLGRLMTLYLFANN-LSALP 217 (285)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCEE---------------------------CTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred ---CHHHhcCccccCEEECCCCccccc---------------------------CHhHccCcccccEeeCCCCc-CCcCC
Confidence 233467788888888876654321 11245667788888888874 33343
Q ss_pred ecccccccCCCcccccCcccEEEeccCC
Q 039262 734 MDYTGVVQNRSQPFVFHSLRKIQIDDCN 761 (885)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~L~~L~L~~c~ 761 (885)
+.... .+++|+.|++++++
T Consensus 218 ~~~~~---------~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 218 TEALA---------PLRALQYLRLNDNP 236 (285)
T ss_dssp HHHHT---------TCTTCCEEECCSSC
T ss_pred HHHcc---------cCcccCEEeccCCC
Confidence 33333 47788888888753
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=3.1e-17 Score=186.20 Aligned_cols=237 Identities=16% Similarity=0.134 Sum_probs=170.4
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcE
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKC 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~ 613 (885)
..+++|++|++++| .+..+++..|..+++|++|+|++| .++..++ ++.+++|++|+|++|.|..+|. .++|++
T Consensus 31 ~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~ 103 (487)
T 3oja_A 31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIET 103 (487)
T ss_dssp TTGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCE
T ss_pred ccCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCE
Confidence 35568999999998 677777767889999999999998 6776554 8889999999999998888774 388999
Q ss_pred EecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccc
Q 039262 614 LNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCT 693 (885)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 693 (885)
|++++| .+..+|. ..+++|++|++.+|.+... ....++.+++|+.|+++.|.+..
T Consensus 104 L~L~~N-~l~~~~~---~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~-------------- 158 (487)
T 3oja_A 104 LHAANN-NISRVSC---SRGQGKKNIYLANNKITML-------RDLDEGCRSRVQYLDLKLNEIDT-------------- 158 (487)
T ss_dssp EECCSS-CCCCEEE---CCCSSCEEEECCSSCCCSG-------GGBCGGGGSSEEEEECTTSCCCE--------------
T ss_pred EECcCC-cCCCCCc---cccCCCCEEECCCCCCCCC-------CchhhcCCCCCCEEECCCCCCCC--------------
Confidence 999988 5666664 3578888888888776542 22345556666666665444321
Q ss_pred eeeEecCCCCCCcccccccc-cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCC
Q 039262 694 QALYLKDFKSSKSLDVSALA-DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAF 771 (885)
Q Consensus 694 ~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~ 771 (885)
.....+. .+++|+.|++++|. +..+ +... .+++|+.|+|++| .++.+| .++.
T Consensus 159 -------------~~~~~l~~~l~~L~~L~Ls~N~-l~~~-~~~~----------~l~~L~~L~Ls~N-~l~~~~~~~~~ 212 (487)
T 3oja_A 159 -------------VNFAELAASSDTLEHLNLQYNF-IYDV-KGQV----------VFAKLKTLDLSSN-KLAFMGPEFQS 212 (487)
T ss_dssp -------------EEGGGGGGGTTTCCEEECTTSC-CCEE-ECCC----------CCTTCCEEECCSS-CCCEECGGGGG
T ss_pred -------------cChHHHhhhCCcccEEecCCCc-cccc-cccc----------cCCCCCEEECCCC-CCCCCCHhHcC
Confidence 1112333 57899999999985 4433 2222 3789999999996 576664 5788
Q ss_pred CCCcceEeEeccccccccccccccccccCccCCccceeecCCcccc-cccCCCCCCCCCcceEEEc
Q 039262 772 APNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNF-QSIYWKPLPFPHLKEMKVI 836 (885)
Q Consensus 772 l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l-~~i~~~~~~~p~L~~L~i~ 836 (885)
+++|+.|+|++| .+..+|. .+..+++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 213 l~~L~~L~Ls~N-~l~~lp~-------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNN-KLVLIEK-------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTS-CCCEECT-------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCC-cCcccch-------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999999999995 5666654 4677899999999987654 2333334457788877775
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.70 E-value=1.3e-17 Score=189.48 Aligned_cols=236 Identities=17% Similarity=0.157 Sum_probs=179.8
Q ss_pred ccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEe
Q 039262 514 WEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHL 591 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L 591 (885)
++++++|++++|.+..++ .+..+++|++|++++| .+...++ |..+++|++|+|++| .++.+|. .++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 458999999999998875 3689999999999999 6666655 889999999999999 8888774 3899999
Q ss_pred ecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhc-CCCCccEE
Q 039262 592 DLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELL-GLKYLEVL 670 (885)
Q Consensus 592 ~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~~L 670 (885)
++++|.+..+|.. .+++|++|++++| .+..+++..++.+++|++|++.+|.+... .+..+. .+++|+.|
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSDTLEHL 174 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE-------EGGGGGGGTTTCCEE
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc-------ChHHHhhhCCcccEE
Confidence 9999999988853 5789999999999 56666554588999999999999876542 244444 67888888
Q ss_pred EEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccC
Q 039262 671 SLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFH 750 (885)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~ 750 (885)
+++.|.+..+ + ....+++|+.|++++|. +..+++.+. .++
T Consensus 175 ~Ls~N~l~~~---------------------------~--~~~~l~~L~~L~Ls~N~-l~~~~~~~~----------~l~ 214 (487)
T 3oja_A 175 NLQYNFIYDV---------------------------K--GQVVFAKLKTLDLSSNK-LAFMGPEFQ----------SAA 214 (487)
T ss_dssp ECTTSCCCEE---------------------------E--CCCCCTTCCEEECCSSC-CCEECGGGG----------GGT
T ss_pred ecCCCccccc---------------------------c--ccccCCCCCEEECCCCC-CCCCCHhHc----------CCC
Confidence 8776554321 1 23346889999999884 455544433 478
Q ss_pred cccEEEeccCCCCCCCC-ccCCCCCcceEeEecccccc-ccccccccccccCccCCccceeecCCcc
Q 039262 751 SLRKIQIDDCNKLKDLT-FLAFAPNLKSIEVNSCHGIQ-EIVSDVPEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 751 ~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~-~i~~~~~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
+|+.|+|++| .+..+| .++.+++|+.|++++|+... .++ ..+..+++|+.|.+..+.
T Consensus 215 ~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~-------~~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 215 GVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp TCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHH-------HHHTTCHHHHHHHHHHHH
T ss_pred CccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchH-------HHHHhCCCCcEEeccccc
Confidence 9999999995 577776 47788999999999875431 222 245667888888776443
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=1.8e-16 Score=168.77 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEe
Q 039262 536 CPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLN 615 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~ 615 (885)
+++|+.|++++| .+..++. +..+++|++|+|++| .+..+|. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 344444444444 3333331 444455555555555 4444443 445555555555555554443 344455555555
Q ss_pred cCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhcccccccccee
Q 039262 616 LENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQA 695 (885)
Q Consensus 616 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 695 (885)
+++| .+..+|. +..+++|++|++.+|.+... ..+..+++|+.|+++.|....
T Consensus 114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~---------------- 165 (308)
T 1h6u_A 114 LTST-QITDVTP--LAGLSNLQVLYLDLNQITNI---------SPLAGLTNLQYLSIGNAQVSD---------------- 165 (308)
T ss_dssp CTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC---------GGGGGCTTCCEEECCSSCCCC----------------
T ss_pred CCCC-CCCCchh--hcCCCCCCEEECCCCccCcC---------ccccCCCCccEEEccCCcCCC----------------
Confidence 5555 2344443 44555555555554433221 113344444444443332211
Q ss_pred eEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCc
Q 039262 696 LYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNL 775 (885)
Q Consensus 696 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L 775 (885)
++ .+..+++|+.|++++|. +..+++ .. .+++|+.|++++| .+..++++..+++|
T Consensus 166 -----------~~--~l~~l~~L~~L~l~~n~-l~~~~~--l~---------~l~~L~~L~L~~N-~l~~~~~l~~l~~L 219 (308)
T 1h6u_A 166 -----------LT--PLANLSKLTTLKADDNK-ISDISP--LA---------SLPNLIEVHLKNN-QISDVSPLANTSNL 219 (308)
T ss_dssp -----------CG--GGTTCTTCCEEECCSSC-CCCCGG--GG---------GCTTCCEEECTTS-CCCBCGGGTTCTTC
T ss_pred -----------Ch--hhcCCCCCCEEECCCCc-cCcChh--hc---------CCCCCCEEEccCC-ccCccccccCCCCC
Confidence 11 13445666666666663 222211 11 4677888888775 56677677778888
Q ss_pred ceEeEecccccccc
Q 039262 776 KSIEVNSCHGIQEI 789 (885)
Q Consensus 776 ~~L~L~~~~~l~~i 789 (885)
+.|++++|. ++..
T Consensus 220 ~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 220 FIVTLTNQT-ITNQ 232 (308)
T ss_dssp CEEEEEEEE-EECC
T ss_pred CEEEccCCe-eecC
Confidence 888888754 4443
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=5.9e-16 Score=168.29 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=144.5
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCc-cccch-hhhccCCCcEEec
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNV-AVLPK-ELNALVNLKCLNL 616 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i-~~Lp~-~l~~L~~L~~L~l 616 (885)
++++++++ .++.+|.++ .+++++|+|++| .++.+|. .+.++++|++|+|++|.+ +.+|. .+.+|++|+++..
T Consensus 12 ~~v~C~~~-~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEEST-TCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCC-CCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 56666666 677777653 246777777777 6777775 467777777777777776 44553 4567777766544
Q ss_pred CCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceee
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQAL 696 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 696 (885)
.++..+..+|++.+..+++|++|++.+|.+.... ...+....++..+++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-------~~~~~~~~~l~~l~l------------------------ 135 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-------DVHKIHSLQKVLLDI------------------------ 135 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------CCTTCCBSSCEEEEE------------------------
T ss_pred ccCCcccccCchhhhhccccccccccccccccCC-------chhhcccchhhhhhh------------------------
Confidence 4433667776666677777777777776554321 111112223333333
Q ss_pred EecCCCCCCcccccccccC-CCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc--cCCCC
Q 039262 697 YLKDFKSSKSLDVSALADL-KHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF--LAFAP 773 (885)
Q Consensus 697 ~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~l~ 773 (885)
.++..+..++...+..+ ..++.|++++| .++.++.... ...+|++|.+.+++.++.+|. +..++
T Consensus 136 --~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 136 --QDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp --ESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred --ccccccccccccchhhcchhhhhhccccc-cccCCChhhc----------cccchhHHhhccCCcccCCCHHHhccCc
Confidence 33333333333334433 35677777776 3444433332 245677777777777777764 56778
Q ss_pred CcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceEEEc
Q 039262 774 NLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEMKVI 836 (885)
Q Consensus 774 ~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L~i~ 836 (885)
+|+.|+|+++ .++.++. ..|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 203 ~L~~LdLs~N-~l~~lp~---------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 203 GPVILDISRT-RIHSLPS---------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp CCSEEECTTS-CCCCCCS---------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred ccchhhcCCC-CcCccCh---------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 8888888775 5666643 3466677777777777777763 4557777777775
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2.3e-16 Score=161.60 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=84.2
Q ss_pred cccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCC-CCccccc-h
Q 039262 527 IDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSD-TNVAVLP-K 603 (885)
Q Consensus 527 ~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~-~~i~~Lp-~ 603 (885)
+..+|. -.++|+.|++++| .+..++...|.++++|++|++++|..++.+|. .+.++++|++|++++ |.++.+| .
T Consensus 23 l~~ip~--~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 555555 2347888888888 67777776788888888888888833777665 577888888888887 7888887 4
Q ss_pred hhhccCCCcEEecCCccccccccchhhcCCCCCc---EEEeecc
Q 039262 604 ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLH---VLRMFGI 644 (885)
Q Consensus 604 ~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~ 644 (885)
.+.++++|++|++++| .+..+|. ++.+++|+ +|++.+|
T Consensus 100 ~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp SEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred HhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 5778888888888888 4666775 67777776 7777665
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.7e-16 Score=169.11 Aligned_cols=192 Identities=24% Similarity=0.332 Sum_probs=152.9
Q ss_pred hcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCc
Q 039262 558 FQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLH 637 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 637 (885)
+..+++|++|++++| .+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+|. +..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSA--IAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGG--GTTCTTCC
T ss_pred HHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCchh--hcCCCCCC
Confidence 457889999999999 899988 68999999999999999999998 999999999999999 5777774 89999999
Q ss_pred EEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCC
Q 039262 638 VLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKH 717 (885)
Q Consensus 638 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 717 (885)
+|++.+|.+.. +..+..+++|+.|+++.|....+ + .+..+++
T Consensus 111 ~L~l~~n~l~~---------~~~l~~l~~L~~L~l~~n~l~~~---------------------------~--~l~~l~~ 152 (308)
T 1h6u_A 111 TLDLTSTQITD---------VTPLAGLSNLQVLYLDLNQITNI---------------------------S--PLAGLTN 152 (308)
T ss_dssp EEECTTSCCCC---------CGGGTTCTTCCEEECCSSCCCCC---------------------------G--GGGGCTT
T ss_pred EEECCCCCCCC---------chhhcCCCCCCEEECCCCccCcC---------------------------c--cccCCCC
Confidence 99999987653 23477788888888776543221 1 2556788
Q ss_pred cceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEecccccccccccccccc
Q 039262 718 LKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVM 797 (885)
Q Consensus 718 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~ 797 (885)
|+.|++++|. +..+++ .. .+++|+.|++++| .++.++.+..+++|++|++++| .+..++
T Consensus 153 L~~L~l~~n~-l~~~~~--l~---------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~------- 211 (308)
T 1h6u_A 153 LQYLSIGNAQ-VSDLTP--LA---------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN-QISDVS------- 211 (308)
T ss_dssp CCEEECCSSC-CCCCGG--GT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS-CCCBCG-------
T ss_pred ccEEEccCCc-CCCChh--hc---------CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCC-ccCccc-------
Confidence 9999998884 343322 22 4789999999985 6888888889999999999886 455543
Q ss_pred ccCccCCccceeecCCcc
Q 039262 798 RNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 798 ~~~~~~p~L~~L~L~~~~ 815 (885)
.+..+++|+.|++++++
T Consensus 212 -~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 212 -PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp -GGTTCTTCCEEEEEEEE
T ss_pred -cccCCCCCCEEEccCCe
Confidence 35778999999998854
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=5.8e-16 Score=162.43 Aligned_cols=203 Identities=21% Similarity=0.192 Sum_probs=128.9
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCccccc-hhhhccCCCcEE
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCL 614 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L 614 (885)
++|++|++++| .+..++...|.++++|++|+|++| .+..+|. .+.++++|++|+|++|.+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 46777888777 666666656777788888888887 6666553 5777788888888888777766 457777888888
Q ss_pred ecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccce
Q 039262 615 NLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQ 694 (885)
Q Consensus 615 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 694 (885)
++++| .+..++...++.+++|++|++.+|.+.... .+..+..+++|+.|+++.|....+...
T Consensus 106 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------l~~~~~~l~~L~~L~Ls~N~l~~~~~~----------- 167 (276)
T 2z62_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK------LPEYFSNLTNLEHLDLSSNKIQSIYCT----------- 167 (276)
T ss_dssp ECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC------CCGGGGGCTTCCEEECCSSCCCEECGG-----------
T ss_pred ECCCC-CccccCchhcccCCCCCEEECcCCccceec------CchhhccCCCCCEEECCCCCCCcCCHH-----------
Confidence 88777 455555534677777888877776654311 234566667777777665544322100
Q ss_pred eeEecCCCCCCcccccccccCCCcc-eEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc--cCC
Q 039262 695 ALYLKDFKSSKSLDVSALADLKHLK-RLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF--LAF 771 (885)
Q Consensus 695 ~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~--l~~ 771 (885)
....+..++.|. +|++++|. +..+++.... ..+|+.|+++++ .++.+|. +..
T Consensus 168 -------------~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~----------~~~L~~L~L~~n-~l~~~~~~~~~~ 222 (276)
T 2z62_A 168 -------------DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFK----------EIRLKELALDTN-QLKSVPDGIFDR 222 (276)
T ss_dssp -------------GGHHHHTCTTCCEEEECCSSC-CCEECTTSSC----------SCCEEEEECCSS-CCSCCCTTTTTT
T ss_pred -------------HhhhhhhccccceeeecCCCc-ccccCccccC----------CCcccEEECCCC-ceeecCHhHhcc
Confidence 000122223333 67777763 3433333322 347888888885 5777663 567
Q ss_pred CCCcceEeEeccc
Q 039262 772 APNLKSIEVNSCH 784 (885)
Q Consensus 772 l~~L~~L~L~~~~ 784 (885)
+++|+.|+|++++
T Consensus 223 l~~L~~L~l~~N~ 235 (276)
T 2z62_A 223 LTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCEEECCSSC
T ss_pred cccccEEEccCCc
Confidence 8888888888754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=4.6e-16 Score=163.95 Aligned_cols=130 Identities=23% Similarity=0.211 Sum_probs=104.6
Q ss_pred cccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 513 KWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
.+++++.+.+.++.+..+|... .++++.|++++| .+..+++..|..+++|++|+|++| .++.+|.. +.+++|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEE
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEE
Confidence 3457888888888888776532 368889999988 677777667888899999999998 78887754 7888899999
Q ss_pred cCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 593 LSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 593 L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
|++|.+..+|..+..+++|++|++++| .++.+|++.+..+++|++|++.+|.+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 999988888888888889999999888 567777666788888888888877654
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=3.2e-16 Score=160.59 Aligned_cols=93 Identities=19% Similarity=0.286 Sum_probs=69.0
Q ss_pred ccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCC-ccccch-hhhccCCCcEEecCCcccccccc
Q 039262 550 LLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTN-VAVLPK-ELNALVNLKCLNLENAWMLTVIP 626 (885)
Q Consensus 550 l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~-i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp 626 (885)
+..+|. + ..+|++|++++| .++.+|. .++.+++|++|++++|+ ++.+|. .+.++++|++|++++|..++.+|
T Consensus 23 l~~ip~--~--~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--L--PPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--C--CTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--C--CCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 556665 2 237888888888 7777765 67788888888888886 888875 57788888888888733677777
Q ss_pred chhhcCCCCCcEEEeeccccc
Q 039262 627 RRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 627 ~~~i~~l~~L~~L~l~~~~~~ 647 (885)
...+..+++|++|++.+|.+.
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCC
T ss_pred HHHhCCCCCCCEEeCCCCCCc
Confidence 665777888888888776654
No 76
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=5.4e-15 Score=161.04 Aligned_cols=291 Identities=12% Similarity=0.076 Sum_probs=178.0
Q ss_pred CCcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc------CHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL------RLENIQEA 227 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~~~~ 227 (885)
+..|+||++++++|.+.+..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...+...
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 356999999999999988764 799999999999999999999875 1 6788765543 56666676
Q ss_pred HHHHcCCC--------------C-c-cccccchhHHHHHHHHHhcc-CcEEEEEccccchhc---------ccccccCCC
Q 039262 228 IGEKIGLV--------------N-D-TWKNRRTEQKALDIFRNLKE-KKFVLLLDDIWERVD---------LSKVGIPLP 281 (885)
Q Consensus 228 i~~~l~~~--------------~-~-~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~---------~~~~~~~l~ 281 (885)
+.+.+... . . .....+..+....+.+.... ++++||+||++.... +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 66655320 0 0 00112334444555554443 499999999965322 122221111
Q ss_pred CCCCCCcEEEEecCChhH-hhh---------c-cC-cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHh
Q 039262 282 GRLNNKSKVVFTTRSEEV-CGL---------M-EA-HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKEC 349 (885)
Q Consensus 282 ~~~~~gs~iivTtR~~~v-~~~---------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c 349 (885)
...+.++|+|++...+ ... . +. ...+.+.+|+.+|+.+++...+.......+ .+.+..|++.|
T Consensus 161 --~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~t 235 (350)
T 2qen_A 161 --SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELL 235 (350)
T ss_dssp --HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHH
T ss_pred --hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHh
Confidence 1247889999987653 211 1 11 247899999999999999886532221112 34678999999
Q ss_pred CCchhHHHHHHHHhcCCCChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCC---ChhhHHHHHHHHhcCCCCcccc
Q 039262 350 GGLPLALITIGRAMSCKRMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNL---PNETIRSCLLYCSLYPEDYRIS 426 (885)
Q Consensus 350 ~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L---~~~~~k~cfl~~~~fp~~~~i~ 426 (885)
+|+|+++..++..+....+...+.. .+.. .+...+.-.+..+ ++ ..+..+..+|. . ..+
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~~~~l~~l~~~~~-~~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RTLE----------VAKGLIMGELEELRRRSP-RYVDILRAIAL-G---YNR 297 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HHHH----------HHHHHHHHHHHHHHHHCH-HHHHHHHHHHT-T---CCS
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HHHH----------HHHHHHHHHHHHHHhCCh-hHHHHHHHHHh-C---CCC
Confidence 9999999998876432122222211 1110 1111111112222 56 78889988887 2 234
Q ss_pred hHHHHHHHHHcCCccCcchhhHHHHHHHHHHHHHHccccccccCCeEE-ehHHHHHHHH
Q 039262 427 KENLIDCWIGEGFLNESVNFGVQKEGYHIVGTLVHACLLEEVEEDEVQ-MHDVIRDMAL 484 (885)
Q Consensus 427 ~~~li~~w~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~-mHdlv~d~a~ 484 (885)
...+....-... - . ........+++.|.+.+++...+ ..|. .|++++++.+
T Consensus 298 ~~~l~~~~~~~~-~-~----~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG-T-K----IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT-C-C----CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh-C-C----CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 444443322210 0 0 11345678899999999998753 4455 4788887653
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=3e-16 Score=164.04 Aligned_cols=130 Identities=24% Similarity=0.367 Sum_probs=83.7
Q ss_pred ccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCE
Q 039262 512 RKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQH 590 (885)
Q Consensus 512 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~ 590 (885)
..+++++.|.+.++.+..++.+..+++|++|++++| .+..++ .+..+++|++|+|++| .++.+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 344567777777777666666666777777777776 454443 2566777777777777 56655543 566777777
Q ss_pred eecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 591 LDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 591 L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
|++++|.+..+|.. ++.+++|++|++++| .+..+|+..++.+++|++|++.+|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence 77777777666643 566777777777776 45566655456666666666666544
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=6.6e-17 Score=172.83 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc--cCchhHh-------ccccCCEeecCCCCcc-ccchhh-
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF--YFPLVIS-------KLVSLQHLDLSDTNVA-VLPKEL- 605 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~--~lp~~i~-------~L~~L~~L~L~~~~i~-~Lp~~l- 605 (885)
++|+.|++++| .+ .+|..+... |++|+|++| .+. .+|..+. ++.+|++|+|++|.+. .+|..+
T Consensus 43 ~~L~~l~l~~n-~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVD-TE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCC-TT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccc-cc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 45555666665 33 555443322 556666665 443 2454444 4566666666666664 455544
Q ss_pred -hccCCCcEEecCCccccccccchhhcCC-----CCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccch
Q 039262 606 -NALVNLKCLNLENAWMLTVIPRRLISSF-----SSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 606 -~~L~~L~~L~l~~~~~l~~lp~~~i~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
..+++|++|++++| .+..+|.. ++.+ ++|++|++.+|.+... ....++.+++|+.|+++.|....
T Consensus 117 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 117 EATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNF-------SCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp SCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCC-------CTTTCCCCSSCCEEECCSCTTCH
T ss_pred HhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccc-------hHHHhccCCCCCEEECCCCCcCc
Confidence 56666666666666 34444432 4443 5666666666554331 22345555566666655554221
Q ss_pred hhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEE---ecccccccCCCcccccCcccEEE
Q 039262 680 LHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELK---MDYTGVVQNRSQPFVFHSLRKIQ 756 (885)
Q Consensus 680 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~~~~~~~~L~~L~ 756 (885)
...... ...+..+++|++|++++|.. ..++ ..... .+++|+.|+
T Consensus 188 ~~~~~~-----------------------~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~~---------~l~~L~~L~ 234 (312)
T 1wwl_A 188 ERGLIS-----------------------ALCPLKFPTLQVLALRNAGM-ETPSGVCSALAA---------ARVQLQGLD 234 (312)
T ss_dssp HHHHHH-----------------------HSCTTSCTTCCEEECTTSCC-CCHHHHHHHHHH---------TTCCCSEEE
T ss_pred chHHHH-----------------------HHHhccCCCCCEEECCCCcC-cchHHHHHHHHh---------cCCCCCEEE
Confidence 100000 00123445566666655532 2110 00000 245666666
Q ss_pred eccCCCCCCC---CccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCCCCCCCCcceE
Q 039262 757 IDDCNKLKDL---TFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWKPLPFPHLKEM 833 (885)
Q Consensus 757 L~~c~~l~~l---~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~~~~~p~L~~L 833 (885)
++++ .+... +.+..+++|+.|++++| .++.++. .+. ++|+.|+++++ .++.++. ...+++|++|
T Consensus 235 Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L 301 (312)
T 1wwl_A 235 LSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK-------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNL 301 (312)
T ss_dssp CTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS-------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEE
T ss_pred CCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhh-------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEE
Confidence 6654 34432 22344566666666664 3444433 111 56666666653 4455443 4456666666
Q ss_pred EEccC
Q 039262 834 KVIHC 838 (885)
Q Consensus 834 ~i~~c 838 (885)
++.++
T Consensus 302 ~L~~N 306 (312)
T 1wwl_A 302 SLKGN 306 (312)
T ss_dssp ECTTC
T ss_pred eccCC
Confidence 66655
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.1e-15 Score=159.75 Aligned_cols=127 Identities=23% Similarity=0.306 Sum_probs=83.1
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhH-hccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVI-SKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~~L~L~ 594 (885)
..+.+.+.++.+..+|... .++|+.|++++| .+..++...|.++++|++|+|++| .++.+|..+ ..+++|++|+|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 3456777777766665421 256777777777 566666655777777777777777 666666543 567777777777
Q ss_pred CCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 595 DTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 595 ~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|.+..+|. .+..+++|++|++++| .+..+|+..++.+++|++|++.+|.+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 777777664 3566777777777776 45556655456666666666665543
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=1.6e-15 Score=158.41 Aligned_cols=169 Identities=24% Similarity=0.388 Sum_probs=121.4
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+..++.+|.. ..+++++|++.+|.+..++. +..+++|++|++++| .+..++...|..+++|++|+|++| .
T Consensus 20 ~l~~~~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n-~ 96 (270)
T 2o6q_A 20 SVDCSSKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN-K 96 (270)
T ss_dssp EEECTTSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS-C
T ss_pred EEEccCCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC-c
Confidence 444555556655542 23578888888888877764 677888888888888 677788777888888888888888 6
Q ss_pred cccCch-hHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 575 LFYFPL-VISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 575 i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
+..+|. .+..+++|++|++++|.+..+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|.+...
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--- 172 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRV--- 172 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEe---
Confidence 777664 45778888888888888887774 4678888888888888 56777776677888888888877765432
Q ss_pred ccccchhhhcCCCCccEEEEEecc
Q 039262 653 IREGELEELLGLKYLEVLSLTLNN 676 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~~ 676 (885)
....+..+++|+.|+++.|.
T Consensus 173 ----~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 173 ----PEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ----CTTTTTTCTTCCEEECCSSC
T ss_pred ----ChhHhccCCCcCEEECCCCc
Confidence 12234555555555555443
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.7e-16 Score=167.36 Aligned_cols=239 Identities=17% Similarity=0.141 Sum_probs=159.4
Q ss_pred EEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCE-eecCCC
Q 039262 519 RLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQH-LDLSDT 596 (885)
Q Consensus 519 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~-L~L~~~ 596 (885)
.+...++++..+|... .++++.|+|++| .+..+|.+.|.++++|++|+|++|...+.+|. .+.++++|++ +.+++|
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 3455556666665421 256777777777 67777776677777788888877732344553 3566766654 455566
Q ss_pred Cccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCC-CCccEEEEEe
Q 039262 597 NVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGL-KYLEVLSLTL 674 (885)
Q Consensus 597 ~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~ 674 (885)
++..+| ..+..+++|++|++++| .+..+|...+....++..|++.++..... .....+..+ ..++.|+++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~------l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHT------IERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCE------ECTTSSTTSBSSCEEEECCS
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccc------ccccchhhcchhhhhhcccc
Confidence 777775 45677777888877777 45666654344455566666654321110 011223333 3466777777
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccE
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRK 754 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 754 (885)
|.+..++...+. ..+++.|.+.+++.++.++...+..+++|+.|++++| .++.++.. .+.+|++
T Consensus 164 N~i~~i~~~~f~---~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~------------~~~~L~~ 227 (350)
T 4ay9_X 164 NGIQEIHNSAFN---GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSY------------GLENLKK 227 (350)
T ss_dssp SCCCEECTTSST---TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSS------------SCTTCCE
T ss_pred ccccCCChhhcc---ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChh------------hhccchH
Confidence 776655443332 2467888888778888888777889999999999998 45544321 3778999
Q ss_pred EEeccCCCCCCCCccCCCCCcceEeEec
Q 039262 755 IQIDDCNKLKDLTFLAFAPNLKSIEVNS 782 (885)
Q Consensus 755 L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 782 (885)
|.+.+++.++.+|.+..+++|+.+++.+
T Consensus 228 L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 228 LRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp EECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9999999999999999999999999865
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.3e-15 Score=159.67 Aligned_cols=214 Identities=24% Similarity=0.276 Sum_probs=155.6
Q ss_pred EcCCccCCCCCcccccceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc
Q 039262 500 YAGARLSEAPDVRKWEKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY 577 (885)
Q Consensus 500 ~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~ 577 (885)
..+..+..+|.. -.+++++|++.+|.+..++ .+..+++|++|++++| .+..++...|.++++|++|+|++| .+..
T Consensus 14 c~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~ 90 (276)
T 2z62_A 14 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQS 90 (276)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred ecCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCC-ccCc
Confidence 344445555542 2358999999999998876 4678999999999999 788888877999999999999999 7776
Q ss_pred Cc-hhHhccccCCEeecCCCCccccch-hhhccCCCcEEecCCcccccc--ccchhhcCCCCCcEEEeecccccCCCCcc
Q 039262 578 FP-LVISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTV--IPRRLISSFSSLHVLRMFGIGYSSSDGII 653 (885)
Q Consensus 578 lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~ 653 (885)
++ ..+.++++|++|++++|.+..++. .++.+++|++|++++| .+.. +|.. ++.+++|++|++.+|.+....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~--- 165 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY--- 165 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC---
T ss_pred cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCC---
Confidence 65 679999999999999999998875 6899999999999999 4555 5654 899999999999998765421
Q ss_pred cccchhhhcCCCCcc-EEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceE
Q 039262 654 REGELEELLGLKYLE-VLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEEL 732 (885)
Q Consensus 654 ~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l 732 (885)
...+..+..++.|. .|+++.|.+..+. ...+. ..+|++|++++|. +..+
T Consensus 166 -~~~~~~l~~L~~l~l~L~ls~n~l~~~~---------------------------~~~~~-~~~L~~L~L~~n~-l~~~ 215 (276)
T 2z62_A 166 -CTDLRVLHQMPLLNLSLDLSLNPMNFIQ---------------------------PGAFK-EIRLKELALDTNQ-LKSV 215 (276)
T ss_dssp -GGGGHHHHTCTTCCEEEECCSSCCCEEC---------------------------TTSSC-SCCEEEEECCSSC-CSCC
T ss_pred -HHHhhhhhhccccceeeecCCCcccccC---------------------------ccccC-CCcccEEECCCCc-eeec
Confidence 12344445555444 5666555433221 11122 2367778887774 4444
Q ss_pred EecccccccCCCcccccCcccEEEeccC
Q 039262 733 KMDYTGVVQNRSQPFVFHSLRKIQIDDC 760 (885)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~L~~L~L~~c 760 (885)
+..... .+++|+.|+++++
T Consensus 216 ~~~~~~---------~l~~L~~L~l~~N 234 (276)
T 2z62_A 216 PDGIFD---------RLTSLQKIWLHTN 234 (276)
T ss_dssp CTTTTT---------TCCSCCEEECCSS
T ss_pred CHhHhc---------ccccccEEEccCC
Confidence 333322 4778888888774
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=1.9e-16 Score=169.24 Aligned_cols=244 Identities=16% Similarity=0.111 Sum_probs=156.3
Q ss_pred ceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccc--cCchhh------cCCCcccEEEecCCCccc-cCchhH--h
Q 039262 516 KVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLI--MDRGFF------QCMPRLKVLNLSGAKQLF-YFPLVI--S 583 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~--~~~~~~------~~l~~Lr~L~Ls~~~~i~-~lp~~i--~ 583 (885)
+++.+.+.+|.+ .+|. +. ..|+.|++++| .+.. ++..+. .++++|++|+|++| .++ .+|..+ +
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~--~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT--DIIKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH--HHHHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSC
T ss_pred CceeEeeccccc-ccHHHHH--HHHhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHh
Confidence 455566666666 4443 12 23888999888 4433 444321 26899999999999 665 678776 8
Q ss_pred ccccCCEeecCCCCccccchhhhcc-----CCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccch
Q 039262 584 KLVSLQHLDLSDTNVAVLPKELNAL-----VNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGEL 658 (885)
Q Consensus 584 ~L~~L~~L~L~~~~i~~Lp~~l~~L-----~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 658 (885)
.+++|++|+|++|.+..+|..++.+ ++|++|++++| .+..+|+..++.+++|++|++.+|.+.... ..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-----~~~ 192 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGER-----GLI 192 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHH-----HHH
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcch-----HHH
Confidence 8999999999999998888888877 89999999999 567777555889999999999988754311 012
Q ss_pred hhh--cCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecc
Q 039262 659 EEL--LGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDY 736 (885)
Q Consensus 659 ~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~ 736 (885)
..+ ..+++|+.|+++.|.+..++.... ..+..+++|++|++++|......+...
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCS------------------------ALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHH------------------------HHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHH------------------------HHHhcCCCCCEEECCCCcCCcccchhh
Confidence 233 677888888887776553322111 122345666666666663322111111
Q ss_pred cccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCc
Q 039262 737 TGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSL 814 (885)
Q Consensus 737 ~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~ 814 (885)
.. .+++|++|+|++| .++.+|.--. ++|++|+|++| .++.++ .+..+++|+.|+++++
T Consensus 249 ~~---------~l~~L~~L~Ls~N-~l~~ip~~~~-~~L~~L~Ls~N-~l~~~p--------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 249 CD---------WPSQLNSLNLSFT-GLKQVPKGLP-AKLSVLDLSYN-RLDRNP--------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp CC---------CCTTCCEEECTTS-CCSSCCSSCC-SEEEEEECCSS-CCCSCC--------CTTTSCEEEEEECTTC
T ss_pred hh---------hcCCCCEEECCCC-ccChhhhhcc-CCceEEECCCC-CCCCCh--------hHhhCCCCCEEeccCC
Confidence 11 2566777777764 4555553211 66777777664 454442 2456677777777764
No 84
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=2.2e-14 Score=156.65 Aligned_cols=290 Identities=13% Similarity=0.105 Sum_probs=170.2
Q ss_pred CCcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-----cCHHHHHHHH
Q 039262 154 DATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-----LRLENIQEAI 228 (885)
Q Consensus 154 ~~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~~i 228 (885)
+..|+||++++++|.+ +.. +++.|+|++|+|||||++++.+.. . . ..+|+.+... .+.......+
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHH
Confidence 3579999999999999 765 699999999999999999999987 2 2 2578887643 3444444444
Q ss_pred HHHcC--------------C----CCc----cc-----cccchhHHHHHHHHHhccCcEEEEEccccchh-----ccccc
Q 039262 229 GEKIG--------------L----VND----TW-----KNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-----DLSKV 276 (885)
Q Consensus 229 ~~~l~--------------~----~~~----~~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----~~~~~ 276 (885)
.+.+. . ..+ .. ...........+.+.-. ++++|||||++... ++..+
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHH
Confidence 43321 0 000 00 01122233333333222 49999999995422 22222
Q ss_pred ccCCCCCCCCCcEEEEecCChhHhh-h---------c-cC-cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHH
Q 039262 277 GIPLPGRLNNKSKVVFTTRSEEVCG-L---------M-EA-HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAET 344 (885)
Q Consensus 277 ~~~l~~~~~~gs~iivTtR~~~v~~-~---------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~ 344 (885)
...+. ....+.++|+|+|...... . . +. ...+.+.+|+.+|+.+++...+....... .+ ...
T Consensus 161 l~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~----~~~ 234 (357)
T 2fna_A 161 LAYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD----YEV 234 (357)
T ss_dssp HHHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC----HHH
T ss_pred HHHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc----HHH
Confidence 11121 1124678999999865321 1 1 11 25789999999999999988653211111 11 288
Q ss_pred HHHHhCCchhHHHHHHHHhcCCCChHHHHHH-HHHHhccCCCCCCCCcchhhhHH-hhh--cCCChhhHHHHHHHHhcCC
Q 039262 345 VAKECGGLPLALITIGRAMSCKRMPEEWSYA-IQVLRTSSSQFPGLGNEVYPLLK-FSY--DNLPNETIRSCLLYCSLYP 420 (885)
Q Consensus 345 i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~-~~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~cfl~~~~fp 420 (885)
|++.|+|+|+++..++..+....+...|..- .+.... .+...+. +.+ ..||+ ..+..+..+|. .
T Consensus 235 i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~l~~-~~~~~l~~la~-g 302 (357)
T 2fna_A 235 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----------LILKEFENFLHGREIARK-RYLNIMRTLSK-C 302 (357)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----------HHHHHHHHHHTTCGGGHH-HHHHHHHHHTT-C
T ss_pred HHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----------HHHHHHHHHhhccccccH-HHHHHHHHHHc-C
Confidence 9999999999999998776432333333211 110000 1111111 111 15777 78899999887 2
Q ss_pred CCcccchHHHHHHHH-HcCCccCcchhhHHHHHHHHHHHHHHccccccccCCeEE-ehHHHHHHH
Q 039262 421 EDYRISKENLIDCWI-GEGFLNESVNFGVQKEGYHIVGTLVHACLLEEVEEDEVQ-MHDVIRDMA 483 (885)
Q Consensus 421 ~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~-mHdlv~d~a 483 (885)
. +...+....- ..|. .........+++.|.+.+++...+ ..|+ .|++++++.
T Consensus 303 --~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 --G--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp --B--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred --C--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 1 3343332110 1121 011345678899999999998764 4455 678888763
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=4.1e-15 Score=156.67 Aligned_cols=198 Identities=20% Similarity=0.201 Sum_probs=148.8
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCCCccccchhhhccCCCc
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDTNVAVLPKELNALVNLK 612 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~ 612 (885)
.++++++.++++++ .+..+|..++ ++|++|+|++| .++.+ |..+..+++|++|+|++|.|..+|.. +.+++|+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccCCccEEECCCC-CCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 46788999999998 7888887643 68999999999 67765 56789999999999999999998865 7899999
Q ss_pred EEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhcccccccc
Q 039262 613 CLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSC 692 (885)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 692 (885)
+|++++| .+..+|.. +..+++|++|++.+|.+... ....+..+++|+.|+++.|.+..
T Consensus 81 ~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l-------~~~~~~~l~~L~~L~L~~N~l~~------------- 138 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSL-------PLGALRGLGELQELYLKGNELKT------------- 138 (290)
T ss_dssp EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCC-------CSSTTTTCTTCCEEECTTSCCCC-------------
T ss_pred EEECCCC-cCCcCchh-hccCCCCCEEECCCCcCccc-------CHHHHcCCCCCCEEECCCCCCCc-------------
Confidence 9999999 67888875 78899999999998876542 23446677777777776554332
Q ss_pred ceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC-ccCC
Q 039262 693 TQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT-FLAF 771 (885)
Q Consensus 693 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~-~l~~ 771 (885)
++...+..+++|+.|++++|. +..++..... .+++|+.|+|+++ .++.+| .+..
T Consensus 139 --------------~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~---------~l~~L~~L~L~~N-~l~~ip~~~~~ 193 (290)
T 1p9a_G 139 --------------LPPGLLTPTPKLEKLSLANNN-LTELPAGLLN---------GLENLDTLLLQEN-SLYTIPKGFFG 193 (290)
T ss_dssp --------------CCTTTTTTCTTCCEEECTTSC-CSCCCTTTTT---------TCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred --------------cChhhcccccCCCEEECCCCc-CCccCHHHhc---------CcCCCCEEECCCC-cCCccChhhcc
Confidence 222245667788888888773 4444443332 4778888888884 677776 3566
Q ss_pred CCCcceEeEeccc
Q 039262 772 APNLKSIEVNSCH 784 (885)
Q Consensus 772 l~~L~~L~L~~~~ 784 (885)
+++|+.|+|++++
T Consensus 194 ~~~L~~l~L~~Np 206 (290)
T 1p9a_G 194 SHLLPFAFLHGNP 206 (290)
T ss_dssp TCCCSEEECCSCC
T ss_pred cccCCeEEeCCCC
Confidence 7788888888765
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=1.1e-14 Score=162.50 Aligned_cols=291 Identities=12% Similarity=0.061 Sum_probs=177.9
Q ss_pred CcccchHHHHHHHHHHH-cc------CCCcEEEE--EcCCCCcHHHHHHHHHHhhcCC--CCCCC-EEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCL-VQ------EPAGIVGL--YGMGGVGKTTLMALINNKFLGS--PTNFD-VVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~------~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~--~~~f~-~~~wv~~s~~~~~~ 222 (885)
..++||++++++|.+.+ .. ...+.+.| +|++|+||||||+.+++..... ...|+ .++|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 42 24567777 9999999999999999876210 01223 46788877777888
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh--------cccccccCCCC--CCC--CCc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV--------DLSKVGIPLPG--RLN--NKS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~--------~~~~~~~~l~~--~~~--~gs 288 (885)
.++..++.+++..... ...+..+....+.+.+. +++++|||||+|... .+..+...+.. ..+ ...
T Consensus 102 ~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999988754321 12234455566666665 679999999997532 22222222210 112 345
Q ss_pred EEEEecCChhHhhhcc---------CcceEEeccCChhhHHHHHHHHhc---CCccCCCchhHHHHHHHHHHhC------
Q 039262 289 KVVFTTRSEEVCGLME---------AHKKFKVECLSHNDAWELFRQKVG---GETLNCHPDILELAETVAKECG------ 350 (885)
Q Consensus 289 ~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~~~l~~~~~~i~~~c~------ 350 (885)
.+|+||+...+...+. ....+.+.+|+.++++++|.+.+. ... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT-VWE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT-SCC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC-CCC---hHHHHHHHHHHHHhccCC
Confidence 5888887655321111 122389999999999999987642 211 111 456889999999
Q ss_pred CchhHHHHHHHHh---c--CC---CChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCC--
Q 039262 351 GLPLALITIGRAM---S--CK---RMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYP-- 420 (885)
Q Consensus 351 GlPLai~~~~~~l---~--~~---~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp-- 420 (885)
|.|..+..+.... . .. -+...+..+...... ...+.-++..||+ +.+.++..++.+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------------~~~~~~~l~~l~~-~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------------ASIQTHELEALSI-HELIILRLIAEATLG 323 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSCH-HHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------------cchHHHHHHcCCH-HHHHHHHHHHHHHhc
Confidence 9997665544321 1 11 123333332221110 2234456788998 7888888888653
Q ss_pred CCcccchHHHHHHHH--H---cCCccCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 421 EDYRISKENLIDCWI--G---EGFLNESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 421 ~~~~i~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
.+..++...+...+. + .|. .. ........++++|...+++...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASLTMYNV-KP----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHHHHSCC-CC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHHHHHHhhcCC-CC----CCHHHHHHHHHHHHhCCCEEee
Confidence 233455555544332 2 121 00 1124466789999999999764
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=7.4e-17 Score=183.07 Aligned_cols=311 Identities=17% Similarity=0.137 Sum_probs=179.4
Q ss_pred ccceeEEEeecCCcccC------CCCCCC-CCceeeeccCCcccccc----CchhhcCCCcccEEEecCCCcccc-Cchh
Q 039262 514 WEKVRRLSLMENQIDNL------SGVPTC-PYLLTLFLNNNKQLLIM----DRGFFQCMPRLKVLNLSGAKQLFY-FPLV 581 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l------~~~~~~-~~Lr~L~l~~~~~l~~~----~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~ 581 (885)
.+++++|++++|.+... ...... ++|++|++++| .+... .+..+..+++|++|+|++| .++. .+..
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 132 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQL 132 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHH
Confidence 35677777777765431 011111 15777777777 44421 1334667777777777777 4543 1222
Q ss_pred Hh-----ccccCCEeecCCCCccc-----cchhhhccCCCcEEecCCccccccccchhh-----cCCCCCcEEEeecccc
Q 039262 582 IS-----KLVSLQHLDLSDTNVAV-----LPKELNALVNLKCLNLENAWMLTVIPRRLI-----SSFSSLHVLRMFGIGY 646 (885)
Q Consensus 582 i~-----~L~~L~~L~L~~~~i~~-----Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i-----~~l~~L~~L~l~~~~~ 646 (885)
+. ...+|++|++++|.+.. ++..+..+++|++|++++|. +.......+ ..+++|++|++.+|.+
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 22 24467777777777653 45556677788888887774 332211111 2356788888877765
Q ss_pred cCCCCcccccchhhhcCCCCccEEEEEecccchhh--hhhcc-ccccccceeeEecCCCCCCcccc----cccccCCCcc
Q 039262 647 SSSDGIIREGELEELLGLKYLEVLSLTLNNSRALH--CVLSS-HRLRSCTQALYLKDFKSSKSLDV----SALADLKHLK 719 (885)
Q Consensus 647 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~~~~----~~l~~l~~L~ 719 (885)
.... .......+..+++|+.|+++.|...... .+... ....++|+.|.+.++. ++.... ..+..+++|+
T Consensus 212 ~~~~---~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 212 TSDN---CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLK 287 (461)
T ss_dssp BTTH---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCC
T ss_pred cHHH---HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcc
Confidence 4311 0012345667888999999888754321 11110 1113688899998863 343211 2355688999
Q ss_pred eEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCC-----C-ccCCCCCcceEeEecccccccccccc
Q 039262 720 RLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDL-----T-FLAFAPNLKSIEVNSCHGIQEIVSDV 793 (885)
Q Consensus 720 ~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~~~l~~i~~~~ 793 (885)
+|++++|.. ....+..... ......++|++|++++|. ++.. + .+..+++|++|+|++| .+++.....
T Consensus 288 ~L~Ls~n~i-~~~~~~~l~~----~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 360 (461)
T 1z7x_W 288 ELSLAGNEL-GDEGARLLCE----TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE 360 (461)
T ss_dssp EEECTTCCC-HHHHHHHHHH----HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH
T ss_pred eEECCCCCC-chHHHHHHHH----HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH
Confidence 999998843 2111111110 000023699999999974 5432 2 3567899999999997 454432110
Q ss_pred ccccccC-ccCCccceeecCCccccc-----ccCCCCCCCCCcceEEEccCCCCC
Q 039262 794 PEVMRNL-NLFAKLQYLGLSSLSNFQ-----SIYWKPLPFPHLKEMKVIHCNKLK 842 (885)
Q Consensus 794 ~~~~~~~-~~~p~L~~L~L~~~~~l~-----~i~~~~~~~p~L~~L~i~~c~~L~ 842 (885)
....+ ...++|+.|++++|. +. .++.....+++|++|++++|+ +.
T Consensus 361 --l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~-i~ 411 (461)
T 1z7x_W 361 --LCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC-LG 411 (461)
T ss_dssp --HHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS-CC
T ss_pred --HHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC-CC
Confidence 00111 126799999999974 44 344334458999999999884 44
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=9.3e-15 Score=152.71 Aligned_cols=170 Identities=26% Similarity=0.345 Sum_probs=144.4
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLF 576 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~ 576 (885)
.+...+..+..++....++++++|++.+|.+..++.+..+++|++|++++| .+..+++..|..+++|++|+|++| .+.
T Consensus 45 ~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~ 122 (272)
T 3rfs_A 45 QIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN-QLQ 122 (272)
T ss_dssp EEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCC
T ss_pred eeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC-cCC
Confidence 345555566667777888999999999999998888899999999999999 788888888899999999999999 788
Q ss_pred cCchh-HhccccCCEeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCccc
Q 039262 577 YFPLV-ISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIR 654 (885)
Q Consensus 577 ~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 654 (885)
.+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|++++| .+..+|+..++.+++|++|++.+|.+...
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~----- 196 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSV----- 196 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-----
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCcc-----
Confidence 77655 78999999999999999999865 689999999999999 57788877678999999999999877642
Q ss_pred ccchhhhcCCCCccEEEEEecc
Q 039262 655 EGELEELLGLKYLEVLSLTLNN 676 (885)
Q Consensus 655 ~~~~~~l~~L~~L~~L~l~~~~ 676 (885)
....+..+++|+.|+++.|.
T Consensus 197 --~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 197 --PDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp --CTTTTTTCTTCCEEECCSSC
T ss_pred --CHHHHhCCcCCCEEEccCCC
Confidence 23446778888888877654
No 89
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=2.4e-16 Score=185.03 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=50.1
Q ss_pred cCcccEEEeccCCC-CCCC--Ccc-CCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccc--cCC
Q 039262 749 FHSLRKIQIDDCNK-LKDL--TFL-AFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQS--IYW 822 (885)
Q Consensus 749 ~~~L~~L~L~~c~~-l~~l--~~l-~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~--i~~ 822 (885)
+++|++|+++.|.+ +..- ..+ ..+++|+.|+|++|. +++.. ....+.++++|+.|+|++|+ +.. ++.
T Consensus 435 ~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~L~~L~l~~n~-l~~~~~~~ 507 (592)
T 3ogk_B 435 CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG-----LMEFSRGCPNLQKLEMRGCC-FSERAIAA 507 (592)
T ss_dssp CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH-----HHHHHTCCTTCCEEEEESCC-CBHHHHHH
T ss_pred CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH-----HHHHHhcCcccCeeeccCCC-CcHHHHHH
Confidence 56666666665542 2211 112 236677777776653 32210 01134567889999999887 432 222
Q ss_pred CCCCCCCcceEEEccCCCCCC
Q 039262 823 KPLPFPHLKEMKVIHCNKLKK 843 (885)
Q Consensus 823 ~~~~~p~L~~L~i~~c~~L~~ 843 (885)
....+|+|++|++++|+ ++.
T Consensus 508 ~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp HHHHCSSCCEEEEESCB-CCT
T ss_pred HHHhcCccCeeECcCCc-CCH
Confidence 22357899999999996 554
No 90
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=6.8e-16 Score=181.11 Aligned_cols=258 Identities=11% Similarity=0.073 Sum_probs=146.9
Q ss_pred hcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCc----cccchhhhccCCCcEEecCCccccccccchhhcCC
Q 039262 558 FQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNV----AVLPKELNALVNLKCLNLENAWMLTVIPRRLISSF 633 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i----~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l 633 (885)
+.++++|++|+|++| .+..+|..+.++++|++|+++++.. ...+..+..+++|+.|++.++ ....+|. .+..+
T Consensus 216 ~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~-~~~~~ 292 (592)
T 3ogk_B 216 ARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPI-LFPFA 292 (592)
T ss_dssp HHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGG-GGGGG
T ss_pred HhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHH-HHhhc
Confidence 344555555555555 4444555555555555555543211 122233445555555555544 2344454 35667
Q ss_pred CCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecC----------CCC
Q 039262 634 SSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKD----------FKS 703 (885)
Q Consensus 634 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~----------~~~ 703 (885)
++|++|++.+|.+... .....+..+++|+.|+++ +.... ..+......+++|+.|.+.+ |+.
T Consensus 293 ~~L~~L~Ls~~~l~~~------~~~~~~~~~~~L~~L~L~-~~~~~-~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~ 364 (592)
T 3ogk_B 293 AQIRKLDLLYALLETE------DHCTLIQKCPNLEVLETR-NVIGD-RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364 (592)
T ss_dssp GGCCEEEETTCCCCHH------HHHHHHTTCTTCCEEEEE-GGGHH-HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCC
T ss_pred CCCcEEecCCCcCCHH------HHHHHHHhCcCCCEEecc-CccCH-HHHHHHHHhCCCCCEEEeecCccccccccccCc
Confidence 7888888877663221 112335788889999888 32211 11111112246789999985 555
Q ss_pred CCcccccc-cccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEecc---CCCCCCCCc-------cCCC
Q 039262 704 SKSLDVSA-LADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDD---CNKLKDLTF-------LAFA 772 (885)
Q Consensus 704 ~~~~~~~~-l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~---c~~l~~l~~-------l~~l 772 (885)
.+...... ...+++|++|++..+ .+....+.... ..+++|+.|++++ |+.++..|. +..+
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~--------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~ 435 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAVYVS-DITNESLESIG--------TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHH--------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHC
T ss_pred cCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHH--------hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhC
Confidence 54433222 345789999999544 33321111211 1378999999984 566766531 4568
Q ss_pred CCcceEeEecccc-ccccccccccccccCccCCccceeecCCcccccc--cCCCCCCCCCcceEEEccCCCCC
Q 039262 773 PNLKSIEVNSCHG-IQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQS--IYWKPLPFPHLKEMKVIHCNKLK 842 (885)
Q Consensus 773 ~~L~~L~L~~~~~-l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~--i~~~~~~~p~L~~L~i~~c~~L~ 842 (885)
++|+.|+|++|.. +.+... ......+|+|+.|++++|. +.. ++.....+++|++|++++|+ ++
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~-----~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~ 501 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGL-----SYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FS 501 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHH-----HHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CB
T ss_pred CCCCEEEEecCCCCccHHHH-----HHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-Cc
Confidence 9999999988764 222111 0112347999999999865 432 22223458999999999997 43
No 91
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=1e-16 Score=181.87 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=45.8
Q ss_pred cCcccEEEeccCCCCCCCC--cc-----CCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccC
Q 039262 749 FHSLRKIQIDDCNKLKDLT--FL-----AFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIY 821 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l~--~l-----~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~ 821 (885)
+++|++|+++++ .+.... .+ ...++|++|++++|. ++..... .....+..+++|+.|+++++ .+....
T Consensus 283 ~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~--~l~~~l~~~~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 283 KESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCS--HFSSVLAQNRFLLELQISNN-RLEDAG 357 (461)
T ss_dssp CTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHH--HHHHHHHHCSSCCEEECCSS-BCHHHH
T ss_pred CCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHH--HHHHHHhhCCCccEEEccCC-cccccc
Confidence 456666666664 232211 01 122566666666653 2221100 00123455688888888876 343321
Q ss_pred C-----C-CCCCCCcceEEEccCCCCC
Q 039262 822 W-----K-PLPFPHLKEMKVIHCNKLK 842 (885)
Q Consensus 822 ~-----~-~~~~p~L~~L~i~~c~~L~ 842 (885)
. . ....++|++|++++| +++
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred HHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 1 0 112678999999988 566
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.56 E-value=1.1e-15 Score=165.33 Aligned_cols=104 Identities=19% Similarity=0.133 Sum_probs=49.8
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc--CchhHhccccCCEeecCCCCcc-ccchhhhccCCCcE
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY--FPLVISKLVSLQHLDLSDTNVA-VLPKELNALVNLKC 613 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~-~Lp~~l~~L~~L~~ 613 (885)
++++.|++++| .+...+.. +..+++|++|+|++| .+.. +|..+..+++|++|+|++|.+. ..|..+..+++|++
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~ 146 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 146 (336)
T ss_dssp TTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred ccceEEEcCCc-cccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence 45555555555 33333333 234555555555555 3432 4445555555555555555543 33444555555555
Q ss_pred EecCCcccccc--ccchhhcCCCCCcEEEeecc
Q 039262 614 LNLENAWMLTV--IPRRLISSFSSLHVLRMFGI 644 (885)
Q Consensus 614 L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~ 644 (885)
|++++|..++. +|. .+..+++|++|++.+|
T Consensus 147 L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 147 LNLSGCSGFSEFALQT-LLSSCSRLDELNLSWC 178 (336)
T ss_dssp EECTTCBSCCHHHHHH-HHHHCTTCCEEECCCC
T ss_pred EECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCC
Confidence 55555532221 222 1344455555554444
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.6e-14 Score=152.22 Aligned_cols=170 Identities=25% Similarity=0.316 Sum_probs=132.0
Q ss_pred cccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCE
Q 039262 511 VRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQH 590 (885)
Q Consensus 511 ~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~ 590 (885)
...+++++.|++.+|.+..++.+..+++|++|++++| .+..+++ +..+++|++|+|++| .++.+|. ++.+++|++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCE
T ss_pred hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCCChh-hccCCCCCE
Confidence 3456788999999998888888888899999999988 6777766 788999999999998 7887764 888999999
Q ss_pred eecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEE
Q 039262 591 LDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVL 670 (885)
Q Consensus 591 L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 670 (885)
|++++|.+..++ .+..+++|++|++++| .+..++. ++.+++|++|++.+|.+... ..+..+++|+.|
T Consensus 117 L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~---------~~l~~l~~L~~L 183 (291)
T 1h6t_A 117 LSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------VPLAGLTKLQNL 183 (291)
T ss_dssp EECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTTCCEE
T ss_pred EECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc---------hhhcCCCccCEE
Confidence 999999888875 5888899999999988 5666653 78889999999988876542 127777888888
Q ss_pred EEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccC
Q 039262 671 SLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECY 727 (885)
Q Consensus 671 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 727 (885)
+++.|.+..+ + .+..+++|+.|++++|.
T Consensus 184 ~L~~N~i~~l---------------------------~--~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKNHISDL---------------------------R--ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCBC---------------------------G--GGTTCTTCSEEEEEEEE
T ss_pred ECCCCcCCCC---------------------------h--hhccCCCCCEEECcCCc
Confidence 7776654322 1 35556778888887763
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=3.3e-14 Score=146.59 Aligned_cols=150 Identities=23% Similarity=0.274 Sum_probs=97.4
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLS 594 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~ 594 (885)
..+++++.++.+..+|... .++|+.|++++| .+..+++..|.++++|++|+|++| .++.++. .+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 3456666667666665422 257777777777 566666666777777777777777 5655543 46777777777777
Q ss_pred CCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEE
Q 039262 595 DTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLT 673 (885)
Q Consensus 595 ~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 673 (885)
+|.+..+|. .+..+++|++|++++| .+..+|...+..+++|++|++.+|.+... ....+..+++|+.|+++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI-------PAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------CTTTTTTCTTCCEEECC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc-------CHHHcCcCcCCCEEECC
Confidence 777777763 4567777777777777 55667766566777777777776655431 12234555555555555
Q ss_pred ecc
Q 039262 674 LNN 676 (885)
Q Consensus 674 ~~~ 676 (885)
.|.
T Consensus 164 ~N~ 166 (251)
T 3m19_A 164 TNQ 166 (251)
T ss_dssp SSC
T ss_pred CCc
Confidence 443
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=4.1e-14 Score=145.89 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=144.0
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+..+..+|.. ...+++.|.+.+|.+..++. +..+++|++|++++| .+..+++..|..+++|++|+|++| .
T Consensus 18 ~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~ 94 (251)
T 3m19_A 18 EVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-Q 94 (251)
T ss_dssp EEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred EEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-c
Confidence 455556666666643 33689999999999988754 678999999999999 788888888999999999999999 7
Q ss_pred cccCch-hHhccccCCEeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCc
Q 039262 575 LFYFPL-VISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGI 652 (885)
Q Consensus 575 i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~ 652 (885)
++.+|. .+..+++|++|+|++|.|..+|.. +..+++|++|++++| .+..+|++.++.+++|++|++.+|.+...
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--- 170 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSV--- 170 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC---
T ss_pred ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCcc---
Confidence 887764 578999999999999999999865 689999999999999 67888886689999999999999987642
Q ss_pred ccccchhhhcCCCCccEEEEEecccc
Q 039262 653 IREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 653 ~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
....+..+++|+.|++++|...
T Consensus 171 ----~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 171 ----PHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ----CTTTTTTCTTCCEEECCSCCBC
T ss_pred ----CHHHHhCCCCCCEEEeeCCcee
Confidence 2345788899999999988754
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=4.2e-15 Score=171.94 Aligned_cols=105 Identities=22% Similarity=0.267 Sum_probs=62.4
Q ss_pred CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCc
Q 039262 533 VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLK 612 (885)
Q Consensus 533 ~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~ 612 (885)
...+++|+.|++++| .+..++. +..+++|++|+|++| .+..+|. ++.+++|++|+|++|.+..+| .+..|++|+
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 344556666666666 4555542 556666666666666 5555554 666666666666666666655 466666666
Q ss_pred EEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 613 CLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 613 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|+|++| .+..+|. +..+++|+.|++.+|.+
T Consensus 113 ~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 113 SLSLEHN-GISDING--LVHLPQLESLYLGNNKI 143 (605)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCSEEECCSSCC
T ss_pred EEEecCC-CCCCCcc--ccCCCccCEEECCCCcc
Confidence 6666666 3444443 55666666666655543
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.5e-14 Score=143.02 Aligned_cols=152 Identities=17% Similarity=0.189 Sum_probs=128.8
Q ss_pred ccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc-CchhHhccccCCE
Q 039262 512 RKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY-FPLVISKLVSLQH 590 (885)
Q Consensus 512 ~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~ 590 (885)
..++++++|++.+|.+..++.+..+++|++|++++| .+..++ .+..+++|++|++++| .++. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~--~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCG--GGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcch--hhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCE
Confidence 456789999999999999888889999999999999 666655 3889999999999999 6664 6788999999999
Q ss_pred eecCCCCccc-cchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 591 LDLSDTNVAV-LPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 591 L~L~~~~i~~-Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
|++++|.+.. .|..++.+++|++|++++|..+..+|. +..+++|++|++.+|.+.. +..+..+++|+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~~L~~ 185 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQ 185 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCSSCCE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCCCCCE
Confidence 9999999975 678899999999999999965788884 8999999999999987653 235778899999
Q ss_pred EEEEecccc
Q 039262 670 LSLTLNNSR 678 (885)
Q Consensus 670 L~l~~~~~~ 678 (885)
|++++|.+.
T Consensus 186 L~l~~N~i~ 194 (197)
T 4ezg_A 186 LYAFSQTIG 194 (197)
T ss_dssp EEECBC---
T ss_pred EEeeCcccC
Confidence 999887754
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.2e-15 Score=179.15 Aligned_cols=83 Identities=12% Similarity=0.199 Sum_probs=49.1
Q ss_pred cCcccEEEeccCCCCCC--CCccCC-CCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCC--C
Q 039262 749 FHSLRKIQIDDCNKLKD--LTFLAF-APNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYW--K 823 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~--~ 823 (885)
+++|++|+|++ .+++ ++.++. +++|+.|+|++|. +++... .....++|+|+.|+|++|+. ..... .
T Consensus 431 ~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~-----~~l~~~~~~L~~L~L~~n~~-~~~~~~~~ 501 (594)
T 2p1m_B 431 CKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM-----HHVLSGCDSLRKLEIRDCPF-GDKALLAN 501 (594)
T ss_dssp CTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH-----HHHHHHCTTCCEEEEESCSC-CHHHHHHT
T ss_pred CCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH-----HHHHhcCCCcCEEECcCCCC-cHHHHHHH
Confidence 45666666644 2222 122332 6777777777764 322111 01125689999999999875 32211 2
Q ss_pred CCCCCCcceEEEccCCC
Q 039262 824 PLPFPHLKEMKVIHCNK 840 (885)
Q Consensus 824 ~~~~p~L~~L~i~~c~~ 840 (885)
...+|+|++|++++|+.
T Consensus 502 ~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGGGSSEEEEESSCC
T ss_pred HHhCCCCCEEeeeCCCC
Confidence 23478999999999965
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=3.9e-15 Score=161.11 Aligned_cols=128 Identities=20% Similarity=0.198 Sum_probs=89.6
Q ss_pred cceeEEEeecCCcccC-CCCCCCCCceeeeccCCcccccc-CchhhcCCCcccEEEecCCCccc-cCchhHhccccCCEe
Q 039262 515 EKVRRLSLMENQIDNL-SGVPTCPYLLTLFLNNNKQLLIM-DRGFFQCMPRLKVLNLSGAKQLF-YFPLVISKLVSLQHL 591 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l-~~~~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~Ls~~~~i~-~lp~~i~~L~~L~~L 591 (885)
.+++.+.+.+|.+... +....+++|++|++++| .+... .+..+..+++|++|+|++| .++ ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEE
Confidence 4677888887776553 33566788888888888 34332 2334778888888888888 554 567778888888888
Q ss_pred ecCCC-Ccc--ccchhhhccCCCcEEecCCcccccc--ccchhhcCCC-CCcEEEeeccc
Q 039262 592 DLSDT-NVA--VLPKELNALVNLKCLNLENAWMLTV--IPRRLISSFS-SLHVLRMFGIG 645 (885)
Q Consensus 592 ~L~~~-~i~--~Lp~~l~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~-~L~~L~l~~~~ 645 (885)
++++| .+. .+|..+.++++|++|++++|..++. ++. .+..++ +|++|++.+|.
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLSGYR 206 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECCSCG
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeCCCc
Confidence 88888 675 3677778888888888888843443 343 356777 77777777663
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=3.6e-15 Score=164.66 Aligned_cols=139 Identities=15% Similarity=0.082 Sum_probs=83.7
Q ss_pred CCCCCceeeeccCCccccccCc----hhhcCCCcccEEEecCCCccc----cCchhH-------hccccCCEeecCCCCc
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDR----GFFQCMPRLKVLNLSGAKQLF----YFPLVI-------SKLVSLQHLDLSDTNV 598 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~----~~~~~l~~Lr~L~Ls~~~~i~----~lp~~i-------~~L~~L~~L~L~~~~i 598 (885)
..+++|++|++++| .+..... ..+..+++|++|+|++| .+. .+|..+ ..+++|++|+|++|.+
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 45677888888887 4433221 12567788888888876 333 334444 5778888888888877
Q ss_pred cc-----cchhhhccCCCcEEecCCccccccccchh----hcCC---------CCCcEEEeecccccCCCCcccccchhh
Q 039262 599 AV-----LPKELNALVNLKCLNLENAWMLTVIPRRL----ISSF---------SSLHVLRMFGIGYSSSDGIIREGELEE 660 (885)
Q Consensus 599 ~~-----Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~----i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~ 660 (885)
.. +|..+..+++|++|++++|. +...+... +..+ ++|++|++.+|.+.... .......
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~l~~~ 182 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS---MKEWAKT 182 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG---HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH---HHHHHHH
Confidence 65 67777888888888888874 33211111 2233 67777777776654211 0001134
Q ss_pred hcCCCCccEEEEEecccc
Q 039262 661 LLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 661 l~~L~~L~~L~l~~~~~~ 678 (885)
+..+++|+.|+++.|.+.
T Consensus 183 l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHCTTCCEEECCSSCCC
T ss_pred HHhCCCcCEEECcCCCCC
Confidence 556666777766665543
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.51 E-value=2e-14 Score=157.01 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=136.0
Q ss_pred CCCceeeeccCCccccccCc----hhhcCCC-cccEEEecCCCccccC-chhHhcc-----ccCCEeecCCCCccccch-
Q 039262 536 CPYLLTLFLNNNKQLLIMDR----GFFQCMP-RLKVLNLSGAKQLFYF-PLVISKL-----VSLQHLDLSDTNVAVLPK- 603 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~~----~~~~~l~-~Lr~L~Ls~~~~i~~l-p~~i~~L-----~~L~~L~L~~~~i~~Lp~- 603 (885)
.++|+.|++++| .+...+. ..|.+++ +|++|+|++| .++.. +..+..+ ++|++|+|++|.+...+.
T Consensus 21 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 344788888877 5666665 4566777 7888888888 56543 5555554 778888888887765542
Q ss_pred h----hhcc-CCCcEEecCCccccccccchh----hcC-CCCCcEEEeecccccCCCCcccccchhhhcCCC-CccEEEE
Q 039262 604 E----LNAL-VNLKCLNLENAWMLTVIPRRL----ISS-FSSLHVLRMFGIGYSSSDGIIREGELEELLGLK-YLEVLSL 672 (885)
Q Consensus 604 ~----l~~L-~~L~~L~l~~~~~l~~lp~~~----i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l 672 (885)
. +..+ ++|++|++++|. +...+... +.. .++|++|++.+|.+.... .......+..++ +|+.|++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---~~~l~~~l~~~~~~L~~L~L 174 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS---SDELIQILAAIPANVNSLNL 174 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC---HHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH---HHHHHHHHhcCCccccEeee
Confidence 2 3444 678888888874 45444322 223 257777777776654321 001122233443 5666666
Q ss_pred EecccchhhhhhccccccccceeeEecCCCCCCcccccccccC-CCcceEeecccCccceEEecccccccCCCcccccCc
Q 039262 673 TLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADL-KHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHS 751 (885)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 751 (885)
+.|.+...... .+. ..+..+ ++|++|++++|.. ......... .. -....++
T Consensus 175 s~n~l~~~~~~----------------------~l~-~~l~~~~~~L~~L~Ls~N~i-~~~~~~~l~---~~-l~~~~~~ 226 (362)
T 3goz_A 175 RGNNLASKNCA----------------------ELA-KFLASIPASVTSLDLSANLL-GLKSYAELA---YI-FSSIPNH 226 (362)
T ss_dssp TTSCGGGSCHH----------------------HHH-HHHHTSCTTCCEEECTTSCG-GGSCHHHHH---HH-HHHSCTT
T ss_pred cCCCCchhhHH----------------------HHH-HHHHhCCCCCCEEECCCCCC-ChhHHHHHH---HH-HhcCCCC
Confidence 55543221100 000 123334 4788888888743 221111000 00 0001358
Q ss_pred ccEEEeccCCCCCCCCc------cCCCCCcceEeEecccccccccccc-ccccccCccCCccceeecCCcc
Q 039262 752 LRKIQIDDCNKLKDLTF------LAFAPNLKSIEVNSCHGIQEIVSDV-PEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 752 L~~L~L~~c~~l~~l~~------l~~l~~L~~L~L~~~~~l~~i~~~~-~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
|++|+|++| .+...+. +..+++|+.|+|++|. +..+.... ......+..+++|+.|++++++
T Consensus 227 L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 889999885 5666532 4677889999998874 22222210 0111356677888888888754
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.51 E-value=2e-13 Score=143.85 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=143.0
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
..+...+..+..++....+++++.|++.+|.+..++.+..+++|+.|++++| .+..++. +..+++|++|+|++| .+
T Consensus 49 ~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~n-~i 124 (291)
T 1h6t_A 49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVKDLSS--LKDLKKLKSLSLEHN-GI 124 (291)
T ss_dssp CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCGGG--GTTCTTCCEEECTTS-CC
T ss_pred cEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCC-cCCCChh--hccCCCCCEEECCCC-cC
Confidence 3445556666677777788999999999999999887889999999999999 6777665 899999999999999 88
Q ss_pred ccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccc
Q 039262 576 FYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIRE 655 (885)
Q Consensus 576 ~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 655 (885)
..++ .+..+++|++|++++|.+..+ ..+..+++|++|++++| .+..+++ +..+++|++|++.+|.+..
T Consensus 125 ~~~~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~~------- 192 (291)
T 1h6t_A 125 SDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHISD------- 192 (291)
T ss_dssp CCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCB-------
T ss_pred CCCh-hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCCC-------
Confidence 8885 689999999999999999998 57899999999999999 5677776 8999999999999987653
Q ss_pred cchhhhcCCCCccEEEEEecccch
Q 039262 656 GELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 656 ~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
+..+..+++|+.|++++|....
T Consensus 193 --l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 --LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --CGGGTTCTTCSEEEEEEEEEEC
T ss_pred --ChhhccCCCCCEEECcCCcccC
Confidence 3458899999999999887643
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=4.7e-14 Score=163.16 Aligned_cols=169 Identities=22% Similarity=0.268 Sum_probs=132.1
Q ss_pred CcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCC
Q 039262 510 DVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQ 589 (885)
Q Consensus 510 ~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~ 589 (885)
....++.++.|.+.+|.+..++.+..+++|+.|+|++| .+..+++ +..|++|++|+|++| .+..+| .++.+++|+
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLK 112 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCC
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCC
Confidence 34456788889999998888888888999999999998 6777766 788999999999999 788877 688899999
Q ss_pred EeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 590 HLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 590 ~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
+|+|++|.+..+| .+..|++|+.|+|++| .+..++. ++.+++|+.|++.+|.+... ..+..+++|+.
T Consensus 113 ~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~~---------~~l~~l~~L~~ 179 (605)
T 1m9s_A 113 SLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI---------VPLAGLTKLQN 179 (605)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCCC---------GGGTTCTTCCE
T ss_pred EEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCCc---------hhhccCCCCCE
Confidence 9999999998875 5888999999999998 5666753 88999999999988876542 12778888888
Q ss_pred EEEEecccchhhhhhccccccccceeeEecC
Q 039262 670 LSLTLNNSRALHCVLSSHRLRSCTQALYLKD 700 (885)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 700 (885)
|+++.|.+..++.+. .+++|+.|.|.+
T Consensus 180 L~Ls~N~i~~l~~l~----~l~~L~~L~L~~ 206 (605)
T 1m9s_A 180 LYLSKNHISDLRALA----GLKNLDVLELFS 206 (605)
T ss_dssp EECCSSCCCBCGGGT----TCTTCSEEECCS
T ss_pred EECcCCCCCCChHHc----cCCCCCEEEccC
Confidence 888877765543221 123555555554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.7e-13 Score=138.96 Aligned_cols=129 Identities=30% Similarity=0.449 Sum_probs=76.2
Q ss_pred cceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEe
Q 039262 515 EKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHL 591 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L 591 (885)
+++++|++.+|.+..++. +..+++|+.|++++| .+..++...|..+++|++|+|++| .++.+|.. +..+++|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeE
Confidence 456666666666655422 345566666666666 455555555566666666666666 55555433 4556666666
Q ss_pred ecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccc
Q 039262 592 DLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 592 ~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+|++|+|..+|..+..+++|++|++++| .+..+|.+.+..+++|++|++.+|.+
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred eccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 6666666666666666666666666666 44555554455566666666655544
No 105
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.48 E-value=4.5e-14 Score=123.66 Aligned_cols=82 Identities=11% Similarity=0.178 Sum_probs=72.3
Q ss_pred ecCchhhhhHHHHhhhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHH
Q 039262 10 SCDGAIFNRCLDCFLGKAAYIRNLQQNVEALGTELGTLIAKKNDLMSRVVNAEQQQ-MRRLDHVQVWLSRVDAVKADADE 88 (885)
Q Consensus 10 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~Wl~~~~~~~~~~ed 88 (885)
++.++ ++|+++++.+|+.++.+++++++.|++||+.|+++|.| |+.+. ...+++++.|+++||+++||+||
T Consensus 2 ~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED 73 (115)
T 3qfl_A 2 AISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIED 73 (115)
T ss_dssp TTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 45666 99999999999999999999999999999999999998 56552 22468899999999999999999
Q ss_pred HHhcCchhhhc
Q 039262 89 LIRDGPQEIEK 99 (885)
Q Consensus 89 ~ld~~~~~~~~ 99 (885)
++|+|.++...
T Consensus 74 ~iD~f~~~~~~ 84 (115)
T 3qfl_A 74 VVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 99999988753
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.48 E-value=3.3e-15 Score=165.02 Aligned_cols=249 Identities=15% Similarity=0.124 Sum_probs=148.2
Q ss_pred ceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCCCcc----ccchhh----
Q 039262 539 LLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDTNVA----VLPKEL---- 605 (885)
Q Consensus 539 Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~----~Lp~~l---- 605 (885)
|+...+... .+..++.. +..+++|++|+|++| .++. ++..+..+++|++|+|++|.+. .+|..+
T Consensus 11 L~~~~l~~~-~~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 11 LKLDAITTE-DEKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CEESSCCSH-HHHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred cccCCCCHH-HHHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 333333333 44555544 778899999999999 6654 3445678999999999998654 345444
Q ss_pred ---hccCCCcEEecCCcccccc-----ccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCC---------CCcc
Q 039262 606 ---NALVNLKCLNLENAWMLTV-----IPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGL---------KYLE 668 (885)
Q Consensus 606 ---~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L---------~~L~ 668 (885)
..+++|++|++++|. +.. +|.. +..+++|++|++.+|.+.... .......+..+ ++|+
T Consensus 88 ~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~l~~~~~~~~~~~L~ 162 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNA-FGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQA---GAKIARALQELAVNKKAKNAPPLR 162 (386)
T ss_dssp HHHTTCTTCCEEECCSCC-CCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHH---HHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHhhCCcccEEECCCCc-CCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHH---HHHHHHHHHHHhhhhhcccCCCCc
Confidence 688999999999995 443 5544 788999999999988764211 00011223334 7888
Q ss_pred EEEEEecccc--hhhhhhccccccccceeeEecCCCCCCc-----ccccccccCCCcceEeecccCcc----ceEEeccc
Q 039262 669 VLSLTLNNSR--ALHCVLSSHRLRSCTQALYLKDFKSSKS-----LDVSALADLKHLKRLQIVECYEL----EELKMDYT 737 (885)
Q Consensus 669 ~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~l----~~l~~~~~ 737 (885)
.|+++.|.+. .++.+.......++|+.|.+.++. +.. +....+..+++|++|++++|... ..++ ...
T Consensus 163 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~-~~l 240 (386)
T 2ca6_A 163 SIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IAL 240 (386)
T ss_dssp EEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH-HHG
T ss_pred EEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH-HHH
Confidence 8888887764 333222222223467777777653 221 11114556677777777776431 1111 111
Q ss_pred ccccCCCcccccCcccEEEeccCCCCCCC-----C-cc--CCCCCcceEeEeccccccc-----cccccccccccC-ccC
Q 039262 738 GVVQNRSQPFVFHSLRKIQIDDCNKLKDL-----T-FL--AFAPNLKSIEVNSCHGIQE-----IVSDVPEVMRNL-NLF 803 (885)
Q Consensus 738 ~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l--~~l~~L~~L~L~~~~~l~~-----i~~~~~~~~~~~-~~~ 803 (885)
. .+++|++|+|++|. +... + .+ +.+++|+.|+|++|. ++. ++. .+ ..+
T Consensus 241 ~---------~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-------~l~~~l 302 (386)
T 2ca6_A 241 K---------SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-------VIDEKM 302 (386)
T ss_dssp G---------GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-------HHHHHC
T ss_pred c---------cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-------HHHhcC
Confidence 1 35677777777753 4432 1 23 336777777777653 333 222 22 346
Q ss_pred CccceeecCCcc
Q 039262 804 AKLQYLGLSSLS 815 (885)
Q Consensus 804 p~L~~L~L~~~~ 815 (885)
|+|+.|++++++
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 777777777654
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.6e-13 Score=138.09 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=100.1
Q ss_pred EEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCCC
Q 039262 519 RLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDTN 597 (885)
Q Consensus 519 ~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~ 597 (885)
.+...++.+..+|... .++|+.|++++| .+..+++..|..+++|++|+|++| .+..+ |..+.++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4555566666665421 257777777777 666676666777777777777777 56554 6667777777777777777
Q ss_pred ccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecc
Q 039262 598 VAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNN 676 (885)
Q Consensus 598 i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 676 (885)
|..+|.. +..+++|++|++++| .+..+++..+..+++|++|++.+|.+... ....+..+++|+.|++++|.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTI-------AKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCC-------CTTTTTTCTTCCEEECCSSC
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEE-------CHHHHhCCCCCCEEEeCCCC
Confidence 7777754 567777777777777 45666555577777777777777765542 22345667777777777665
Q ss_pred c
Q 039262 677 S 677 (885)
Q Consensus 677 ~ 677 (885)
.
T Consensus 164 ~ 164 (220)
T 2v9t_B 164 F 164 (220)
T ss_dssp E
T ss_pred c
Confidence 4
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=1.6e-13 Score=142.28 Aligned_cols=155 Identities=21% Similarity=0.254 Sum_probs=130.2
Q ss_pred CCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhcc
Q 039262 506 SEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKL 585 (885)
Q Consensus 506 ~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L 585 (885)
..++....+++++.|++.+|.+..++.+..+++|+.|++++| .+..+++ +..+++|++|+|++| .++.+|... .
T Consensus 32 ~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~- 105 (263)
T 1xeu_A 32 TDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S- 105 (263)
T ss_dssp TSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-
T ss_pred ccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-
Confidence 334445567799999999999998888888999999999999 7777776 889999999999999 888888543 3
Q ss_pred ccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCC
Q 039262 586 VSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLK 665 (885)
Q Consensus 586 ~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 665 (885)
.+|++|+|++|.+..+| .+..+++|++|++++| .++.+|. ++.+++|++|++.+|.+.. ...+..++
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~---------~~~l~~l~ 172 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITN---------TGGLTRLK 172 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCB---------CTTSTTCC
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcc---------hHHhccCC
Confidence 89999999999999887 5899999999999999 5777774 8899999999999887654 25577889
Q ss_pred CccEEEEEecccch
Q 039262 666 YLEVLSLTLNNSRA 679 (885)
Q Consensus 666 ~L~~L~l~~~~~~~ 679 (885)
+|+.|++++|....
T Consensus 173 ~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 173 KVNWIDLTGQKCVN 186 (263)
T ss_dssp CCCEEEEEEEEEEC
T ss_pred CCCEEeCCCCcccC
Confidence 99999999887643
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=150.28 Aligned_cols=209 Identities=14% Similarity=0.075 Sum_probs=116.9
Q ss_pred CCcccEEEecCCCccccCchhH--hccccCCEeecCCCCcccc-c----hhhhccCCCcEEecCCccccccccchhhcCC
Q 039262 561 MPRLKVLNLSGAKQLFYFPLVI--SKLVSLQHLDLSDTNVAVL-P----KELNALVNLKCLNLENAWMLTVIPRRLISSF 633 (885)
Q Consensus 561 l~~Lr~L~Ls~~~~i~~lp~~i--~~L~~L~~L~L~~~~i~~L-p----~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l 633 (885)
+++|++|+|++|......|..+ +.+++|++|+|++|.+... | ..+..+++|++|++++| .+..+|+..++.+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccC
Confidence 4568888888773233556665 7778888888888777542 1 33456778888888877 4455665556777
Q ss_pred CCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccc
Q 039262 634 SSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALA 713 (885)
Q Consensus 634 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 713 (885)
++|++|++.+|.+..... ......+..+++|+.|+++.|.+..++.... ..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~------------------------~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERG---LMAALCPHKFPAIQNLALRNTGMETPTGVCA------------------------ALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHH---HHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH------------------------HHHH
T ss_pred CCCCEEECCCCCCccchh---hhHHHhhhcCCCCCEEECCCCCCCchHHHHH------------------------HHHh
Confidence 788888877775432100 0001112455666666666555433222110 0124
Q ss_pred cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCccCCCCCcceEeEecccccccccccc
Q 039262 714 DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDV 793 (885)
Q Consensus 714 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~ 793 (885)
.+++|++|++++|......+..+.. ...+++|++|+|++| .++.+|..- .++|+.|+|++| .++.++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~-------~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls~N-~l~~~~--- 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPR-------CMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLSSN-RLNRAP--- 288 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSS-------CCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECCSC-CCCSCC---
T ss_pred cCCCCCEEECCCCCCCccchhhHHh-------ccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECCCC-cCCCCc---
Confidence 4567777777766432211222211 001357777777764 566665321 367777777774 344442
Q ss_pred ccccccCccCCccceeecCCcc
Q 039262 794 PEVMRNLNLFAKLQYLGLSSLS 815 (885)
Q Consensus 794 ~~~~~~~~~~p~L~~L~L~~~~ 815 (885)
.+..+|+|+.|++++++
T Consensus 289 -----~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 -----QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp -----CTTSCCCCSCEECSSTT
T ss_pred -----hhhhCCCccEEECcCCC
Confidence 24556777777777643
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=3.9e-13 Score=135.25 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=126.6
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
.+...+.+++.+|.. ..++++.|.+.+|.+..++. +..+++|+.|++++| .+..+++..|.++++|++|+|++| .
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-K 91 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-C
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-c
Confidence 345556667777652 23689999999999988764 688999999999999 788887777999999999999999 8
Q ss_pred cccCchh-HhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 575 LFYFPLV-ISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 575 i~~lp~~-i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
++.+|.. +..+++|++|+|++|.|..++ ..+..+++|++|++++| .+..+|.+.+..+++|++|++.+|.+.-
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9998876 588999999999999999885 67999999999999999 6788887778999999999999987654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=5.5e-13 Score=131.76 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=122.8
Q ss_pred cEEEEcCCccCCCCCcccccceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 496 DYLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
..+...+..+..++....++++++|.+.+|.+..++.+..+++|++|++++| .+.......+..+++|++|+|++| .+
T Consensus 47 ~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n-~i 124 (197)
T 4ezg_A 47 TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS-AH 124 (197)
T ss_dssp CEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSS-BC
T ss_pred cEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCC-cc
Confidence 3455566667777777888999999999998888888899999999999999 565533344889999999999999 66
Q ss_pred c-cCchhHhccccCCEeecCCCC-ccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 576 F-YFPLVISKLVSLQHLDLSDTN-VAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 576 ~-~lp~~i~~L~~L~~L~L~~~~-i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
. ..|..++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++. +..+++|++|++.+|.+.
T Consensus 125 ~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 125 DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 6 478889999999999999998 99998 6999999999999999 5677773 889999999999988754
No 112
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=6.9e-15 Score=172.63 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=48.8
Q ss_pred cccceeEEEeecCCccc-----CCCC-CCCCCceeeeccCCccccccC----chhhcCCCcccEEEecCCCccccCchhH
Q 039262 513 KWEKVRRLSLMENQIDN-----LSGV-PTCPYLLTLFLNNNKQLLIMD----RGFFQCMPRLKVLNLSGAKQLFYFPLVI 582 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~l~~~~----~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i 582 (885)
.++++++|++.+|.+.. ++.+ ..+++|++|++++|. ..+. ..++..+++|++|+|++|..+..+|..+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 34577777777765433 2222 366778888877773 1122 1223456777788877775555566666
Q ss_pred hccccCCEeecCC
Q 039262 583 SKLVSLQHLDLSD 595 (885)
Q Consensus 583 ~~L~~L~~L~L~~ 595 (885)
..+++|++|++++
T Consensus 232 ~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 232 QRAPQLEELGTGG 244 (594)
T ss_dssp HHCTTCSEEECSB
T ss_pred hcCCcceEccccc
Confidence 6677777776443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=5e-13 Score=134.41 Aligned_cols=149 Identities=18% Similarity=0.295 Sum_probs=105.0
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCcccccc-CchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIM-DRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSD 595 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~ 595 (885)
+.++++++.+..+|.. -.+.++.|++++| .+..+ +...|..+++|++|+|++| .++.+|. .++++++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC
Confidence 3677777777776642 2345678888887 56666 3455778888888888888 6766654 677888888888888
Q ss_pred CCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|.+..+|.. +..+++|++|++++| .+..+++..+..+++|++|++.+|.+... ....+..+++|+.|++++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV-------APGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB-------CTTTTTTCTTCCEEECCS
T ss_pred CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE-------CHHHhcCCCCCCEEEecC
Confidence 888777643 777888888888887 45666544577788888888877766542 244566777788887777
Q ss_pred ccc
Q 039262 675 NNS 677 (885)
Q Consensus 675 ~~~ 677 (885)
|..
T Consensus 163 N~l 165 (220)
T 2v70_A 163 NPF 165 (220)
T ss_dssp CCE
T ss_pred cCC
Confidence 664
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=4e-13 Score=134.14 Aligned_cols=124 Identities=25% Similarity=0.342 Sum_probs=75.4
Q ss_pred EEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCCCCc
Q 039262 520 LSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSDTNV 598 (885)
Q Consensus 520 L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~~i 598 (885)
+...++.+..+|. .-.++|++|++++| .+..++...|..+++|++|+|++| .++.+|.. +..+++|++|+|++|.+
T Consensus 12 v~c~~~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPT-GIPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCccCCCC-CCCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 4444444444443 12346667777766 555666655666677777777776 56665543 45666777777777766
Q ss_pred cccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 599 AVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 599 ~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
..+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 666643 466667777777666 455566554566666666666665443
No 115
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=145.32 Aligned_cols=129 Identities=22% Similarity=0.145 Sum_probs=58.7
Q ss_pred ceeEEEeecCCcccC-CC-C--CCCCCceeeeccCCcccccc-C---chhhcCCCcccEEEecCCCccccCc-hhHhccc
Q 039262 516 KVRRLSLMENQIDNL-SG-V--PTCPYLLTLFLNNNKQLLIM-D---RGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLV 586 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l-~~-~--~~~~~Lr~L~l~~~~~l~~~-~---~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~ 586 (885)
++++|++.+|.+... +. + ..+++|++|++++| .+... + ...+..+++|++|+|++| .+..+| ..++.++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFP 169 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCC
Confidence 355555555554432 11 1 34555555555555 22221 1 111234555555555555 343332 3455555
Q ss_pred cCCEeecCCCCccc---cchh--hhccCCCcEEecCCccccccccch---hhcCCCCCcEEEeeccccc
Q 039262 587 SLQHLDLSDTNVAV---LPKE--LNALVNLKCLNLENAWMLTVIPRR---LISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 587 ~L~~L~L~~~~i~~---Lp~~--l~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~~ 647 (885)
+|++|+|++|++.. +|.. +..+++|++|++++| .++.+|.. +++.+++|++|++.+|.+.
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 55555555555422 2211 245555555555555 33333321 2344555555555555443
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=6.1e-13 Score=133.81 Aligned_cols=149 Identities=17% Similarity=0.279 Sum_probs=124.4
Q ss_pred EEEEcCCccCCCCCcccccceeEEEeecCCcccCCC---CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCC
Q 039262 497 YLVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG---VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAK 573 (885)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~ 573 (885)
.+...+..++.+|. .....+++|.+.+|.+..++. +..+++|++|++++| .+..+++..|.++++|++|+|++|
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N- 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN- 91 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-
Confidence 34445556666664 234578999999999988743 578999999999999 788888877999999999999999
Q ss_pred ccccCch-hHhccccCCEeecCCCCcccc-chhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCC
Q 039262 574 QLFYFPL-VISKLVSLQHLDLSDTNVAVL-PKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSS 649 (885)
Q Consensus 574 ~i~~lp~-~i~~L~~L~~L~L~~~~i~~L-p~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~ 649 (885)
.++.+|. .++.+++|++|+|++|.|..+ |..+..+++|++|++++| .+..+++..+..+++|++|++.+|.+...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 7877765 489999999999999999888 577999999999999999 56777655689999999999999876543
No 117
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.4e-12 Score=130.15 Aligned_cols=146 Identities=25% Similarity=0.354 Sum_probs=123.5
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
+...+.+...+|. ...+++++|++.+|.+..++. +..+++|++|++++| .+..++...|..+++|++|+|++| .+
T Consensus 12 v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l 88 (208)
T 2o6s_A 12 VECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QL 88 (208)
T ss_dssp EECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cC
Confidence 3344455555553 235689999999999988765 578999999999999 788888888899999999999999 88
Q ss_pred ccCchh-HhccccCCEeecCCCCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 576 FYFPLV-ISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 576 ~~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
+.+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 888765 68999999999999999999865 789999999999999 577888877889999999999987643
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.42 E-value=4.9e-14 Score=153.93 Aligned_cols=259 Identities=14% Similarity=0.065 Sum_probs=161.9
Q ss_pred eeccCCccccccCchhhcCCCcccEEEecCCCccccCc-----hhHhccc-cCCEeecCCCCcccc-chhhhcc-----C
Q 039262 542 LFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-----LVISKLV-SLQHLDLSDTNVAVL-PKELNAL-----V 609 (885)
Q Consensus 542 L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~i~~L-p~~l~~L-----~ 609 (885)
+.+++| .+....+.++...++|++|+|++| .++..+ ..+..++ +|++|+|++|.+... +..+..+ +
T Consensus 3 ~~ls~n-~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLH-PGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCC-TTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccc-cchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 456666 455555566677777999999999 787765 5677888 899999999999776 3556654 8
Q ss_pred CCcEEecCCccccccccchh----hcCC-CCCcEEEeecccccCCCCcccccchhhhcCC-CCccEEEEEecccchhhhh
Q 039262 610 NLKCLNLENAWMLTVIPRRL----ISSF-SSLHVLRMFGIGYSSSDGIIREGELEELLGL-KYLEVLSLTLNNSRALHCV 683 (885)
Q Consensus 610 ~L~~L~l~~~~~l~~lp~~~----i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~ 683 (885)
+|++|++++|. +...+... +..+ ++|++|++.+|.+.... .......+..+ ++|+.|+++.|.+.....
T Consensus 81 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~---~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~- 155 (362)
T 3goz_A 81 NVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS---SSEFKQAFSNLPASITSLNLRGNDLGIKSS- 155 (362)
T ss_dssp TCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC---HHHHHHHHTTSCTTCCEEECTTSCGGGSCH-
T ss_pred CccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH---HHHHHHHHHhCCCceeEEEccCCcCCHHHH-
Confidence 99999999994 45444321 3344 78999999888765422 00111223342 467777776655432100
Q ss_pred hccccccccceeeEecCCCCCCcccccccccCC-CcceEeecccCccceEEecccccccCCCccccc-CcccEEEeccCC
Q 039262 684 LSSHRLRSCTQALYLKDFKSSKSLDVSALADLK-HLKRLQIVECYELEELKMDYTGVVQNRSQPFVF-HSLRKIQIDDCN 761 (885)
Q Consensus 684 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~-~~L~~L~L~~c~ 761 (885)
..+. ..+..++ +|++|++++|.... ..+..... ....+ ++|++|+|++|
T Consensus 156 ---------------------~~l~-~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~-----~l~~~~~~L~~L~Ls~N- 206 (362)
T 3goz_A 156 ---------------------DELI-QILAAIPANVNSLNLRGNNLAS-KNCAELAK-----FLASIPASVTSLDLSAN- 206 (362)
T ss_dssp ---------------------HHHH-HHHHTSCTTCCEEECTTSCGGG-SCHHHHHH-----HHHTSCTTCCEEECTTS-
T ss_pred ---------------------HHHH-HHHhcCCccccEeeecCCCCch-hhHHHHHH-----HHHhCCCCCCEEECCCC-
Confidence 0000 1233333 89999999884332 22211110 00023 59999999996
Q ss_pred CCCC-----CC-ccCC-CCCcceEeEeccccccccccccccccccCccCCccceeecCCcc-------cccccCCCCCCC
Q 039262 762 KLKD-----LT-FLAF-APNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLS-------NFQSIYWKPLPF 827 (885)
Q Consensus 762 ~l~~-----l~-~l~~-l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~-------~l~~i~~~~~~~ 827 (885)
.+.. ++ .+.. .++|++|+|++| .+++.+... ....+..+++|+.|++++|. .+..+......+
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~--l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l 283 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLEN--LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHH--HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTC
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHH--HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccC
Confidence 4665 32 2334 469999999996 455543211 11245778999999999875 133333344567
Q ss_pred CCcceEEEccCC
Q 039262 828 PHLKEMKVIHCN 839 (885)
Q Consensus 828 p~L~~L~i~~c~ 839 (885)
++|+.|++++++
T Consensus 284 ~~L~~LdL~~N~ 295 (362)
T 3goz_A 284 QKIILVDKNGKE 295 (362)
T ss_dssp CEEEEECTTSCB
T ss_pred CceEEEecCCCc
Confidence 889999998774
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=8.1e-14 Score=144.43 Aligned_cols=165 Identities=20% Similarity=0.195 Sum_probs=108.4
Q ss_pred cceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecC
Q 039262 515 EKVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLS 594 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~ 594 (885)
.++..+.+..+.+..++.+..+++|++|++++| .+..++. +..+++|++|+|++| .++.+|. ++.+++|++|+|+
T Consensus 19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 345555566666666655566777777777777 5666652 667777777777777 6777765 7777777777777
Q ss_pred CCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 595 DTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 595 ~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
+|++..+|.... .+|++|++++| .+..+|. +..+++|++|++.+|.+.. +..+..+++|+.|+++.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~---------~~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS---------IVMLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB---------CGGGGGCTTCCEEECTT
T ss_pred CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC---------ChHHccCCCCCEEECCC
Confidence 777777764322 77777777777 4556653 6777777777777765543 22455566666666654
Q ss_pred cccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccC
Q 039262 675 NNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECY 727 (885)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 727 (885)
|.+.. + ..+..+++|+.|++++|.
T Consensus 160 N~i~~---------------------------~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 160 NEITN---------------------------T--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCCB---------------------------C--TTSTTCCCCCEEEEEEEE
T ss_pred CcCcc---------------------------h--HHhccCCCCCEEeCCCCc
Confidence 44321 1 246667888889888874
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=7.1e-13 Score=134.26 Aligned_cols=150 Identities=25% Similarity=0.266 Sum_probs=126.1
Q ss_pred eeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCC
Q 039262 517 VRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSD 595 (885)
Q Consensus 517 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~ 595 (885)
.+.++..++.+..+|.. -.++|++|++++| .+..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 34577778888888763 2389999999999 788887777999999999999999 88888754 68999999999999
Q ss_pred CCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|.|..+|.. +..+++|++|++++| .+..+|.. +..+++|++|++.+|.+... ....+..+++|+.|++++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSI-------PHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCC-------CTTTTTTCTTCCEEECTT
T ss_pred CcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCcc-------CHHHHhCCCCCCEEEeeC
Confidence 999999865 689999999999999 67899987 78999999999999877642 234577889999999987
Q ss_pred cccc
Q 039262 675 NNSR 678 (885)
Q Consensus 675 ~~~~ 678 (885)
|...
T Consensus 169 N~~~ 172 (229)
T 3e6j_A 169 NPWD 172 (229)
T ss_dssp SCBC
T ss_pred CCcc
Confidence 7653
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.41 E-value=1.6e-11 Score=135.17 Aligned_cols=289 Identities=13% Similarity=-0.020 Sum_probs=178.3
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCC----CCC-CCEEEEEEEcCcc-CHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGS----PTN-FDVVIWVVVSKDL-RLENI 224 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~-f~~~~wv~~s~~~-~~~~~ 224 (885)
..++||+++++++.+.+.. ...+.+.|+|++|+||||+|+.+++..... .+. ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5799999999999877753 456799999999999999999999875110 011 3467888887766 88888
Q ss_pred HHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc--cccc-ccCCCCCCCCCcEEEEecCChhHhh
Q 039262 225 QEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD--LSKV-GIPLPGRLNNKSKVVFTTRSEEVCG 301 (885)
Q Consensus 225 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~-~~~l~~~~~~gs~iivTtR~~~v~~ 301 (885)
+..++..+..........+.......+.+.+..++.+|||||++.... .... ...+.... .+..+|+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 888888873211111233345566777778877777999999975322 1122 12222122 6788999998753211
Q ss_pred hc------cCcceEEeccCChhhHHHHHHHHhcC--CccCCCchhHHHHHHHHHHhC---Cchh-HHHHHHHH--hc---
Q 039262 302 LM------EAHKKFKVECLSHNDAWELFRQKVGG--ETLNCHPDILELAETVAKECG---GLPL-ALITIGRA--MS--- 364 (885)
Q Consensus 302 ~~------~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---GlPL-ai~~~~~~--l~--- 364 (885)
.+ .....+.+++++.++..++|...+.. .....+ .+..+.+++.++ |.|. |+..+... +.
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~ 255 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGG 255 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSS
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCC
Confidence 11 11238999999999999999997631 111222 234677888887 9887 43333222 22
Q ss_pred CCCChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCCCC-cccchHHHHHHHHHcCCccCc
Q 039262 365 CKRMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYPED-YRISKENLIDCWIGEGFLNES 443 (885)
Q Consensus 365 ~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~~-~~i~~~~li~~w~a~g~i~~~ 443 (885)
..-+.+.+..+++.... ..+..++..|++ +.+..+..++. ... ..+. .......-..| +..
T Consensus 256 ~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~~- 317 (384)
T 2qby_B 256 GIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QKP- 317 (384)
T ss_dssp SCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CCC-
T ss_pred CccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CCC-
Confidence 12356666666554321 345667788988 67776666665 111 1111 11111111222 111
Q ss_pred chhhHHHHHHHHHHHHHHccccccc
Q 039262 444 VNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 444 ~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
........+++.|...++++..
T Consensus 318 ---~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 ---LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCHHHHHHHHHHHHhCCCEEEE
Confidence 1235667889999999999874
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=8.6e-13 Score=143.84 Aligned_cols=169 Identities=24% Similarity=0.313 Sum_probs=119.7
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CC-CCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VP-TCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~-~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
+...+..+..+|. .....++.|++++|.+..++. +. .+++|++|++++| .+..+++..|..+++|++|+|++| .
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~ 99 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSN-H 99 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-C
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCC-c
Confidence 4444555666654 233567888888888877654 33 7788888888888 677777767888888888888888 6
Q ss_pred cccCch-hHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCCccccccccchhh---cCCCCCcEEEeecccccCC
Q 039262 575 LFYFPL-VISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLI---SSFSSLHVLRMFGIGYSSS 649 (885)
Q Consensus 575 i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~~~ 649 (885)
++.+|. .+..+.+|++|+|++|.|..++ ..+..+++|++|+|++| .+..+|...+ ..+++|++|++.+|.+...
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 777654 4778888888888888887774 56788888888888888 5677777655 5688888888888766542
Q ss_pred CCcccccchhhhcCCCC--ccEEEEEeccc
Q 039262 650 DGIIREGELEELLGLKY--LEVLSLTLNNS 677 (885)
Q Consensus 650 ~~~~~~~~~~~l~~L~~--L~~L~l~~~~~ 677 (885)
....+..++. ++.|++++|..
T Consensus 179 -------~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 179 -------PLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -------CHHHHHHSCHHHHTTEECCSSCE
T ss_pred -------CHHHhhhccHhhcceEEecCCCc
Confidence 2345555655 36677776654
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=8.4e-13 Score=126.77 Aligned_cols=128 Identities=27% Similarity=0.339 Sum_probs=97.5
Q ss_pred cceeEEEeecCCcc--cCCCC-CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc-CchhHhccccCCE
Q 039262 515 EKVRRLSLMENQID--NLSGV-PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY-FPLVISKLVSLQH 590 (885)
Q Consensus 515 ~~lr~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~ 590 (885)
+++++|.+.+|.+. .++.. ..+++|++|++++| .+..+ ..+..+++|++|+|++| .+.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 47888888888877 66654 67788888888888 56666 34778888888888888 6666 7777777888888
Q ss_pred eecCCCCccccc--hhhhccCCCcEEecCCccccccccc---hhhcCCCCCcEEEeeccccc
Q 039262 591 LDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIPR---RLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 591 L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~~~ 647 (885)
|++++|.+..+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|...
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 888888888876 67888888888888888 4566665 44778888888888776543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=9.6e-13 Score=123.51 Aligned_cols=123 Identities=26% Similarity=0.308 Sum_probs=102.2
Q ss_pred cceeEEEeecCCcc--cCCCC-CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc-CchhHhccccCCE
Q 039262 515 EKVRRLSLMENQID--NLSGV-PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY-FPLVISKLVSLQH 590 (885)
Q Consensus 515 ~~lr~L~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~~L~~L~~ 590 (885)
+++++|++.+|.+. .++.. ..+++|++|++++| .+..+ ..+..+++|++|+|++| .++. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 57899999999887 66654 78899999999999 66666 34888999999999999 7776 8888888999999
Q ss_pred eecCCCCccccc--hhhhccCCCcEEecCCccccccccc---hhhcCCCCCcEEEee
Q 039262 591 LDLSDTNVAVLP--KELNALVNLKCLNLENAWMLTVIPR---RLISSFSSLHVLRMF 642 (885)
Q Consensus 591 L~L~~~~i~~Lp--~~l~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 642 (885)
|++++|.+..+| ..++.+++|++|++++| .+..+|. ..++.+++|++|++.
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 999999998876 77899999999999999 5666765 457888889888764
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=1.9e-11 Score=134.90 Aligned_cols=290 Identities=14% Similarity=0.091 Sum_probs=176.9
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCC---CCCCEEEEEEEcCccCHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSP---TNFDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~ 227 (885)
+.++||+++++++.+++.. ...+.+.|+|++|+||||+|+.+++...... +.--..+|+.+....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5799999999999998843 4567899999999999999999998762100 11235678888888888899999
Q ss_pred HHHHcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchhc-------ccccccCCCCCC-CCCcEEEEecCCh
Q 039262 228 IGEKIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERVD-------LSKVGIPLPGRL-NNKSKVVFTTRSE 297 (885)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~-------~~~~~~~l~~~~-~~gs~iivTtR~~ 297 (885)
++.+++..... ...+..+....+.+.+. +++.+|||||++.... +..+........ ..+..+|.||+..
T Consensus 99 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPF-TGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCS-SCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 99988654321 23334555566666663 4688999999965321 111111111011 3456778888765
Q ss_pred hH--------hhhccCcceEEeccCChhhHHHHHHHHhcC--CccCCCchhHHHHHHHHHHhC---CchhHH-HHHHHHh
Q 039262 298 EV--------CGLMEAHKKFKVECLSHNDAWELFRQKVGG--ETLNCHPDILELAETVAKECG---GLPLAL-ITIGRAM 363 (885)
Q Consensus 298 ~v--------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~l~~~~~~i~~~c~---GlPLai-~~~~~~l 363 (885)
.. ...+ ....+.+++++.++..+++.+.+.. .....++ +..+.+++.++ |.|..+ ..+....
T Consensus 178 ~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 178 GFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp TTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 32 1111 1146899999999999999987632 1112222 24677888887 999433 3222221
Q ss_pred --c---C--CCChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHh-cCCCCcccchHHHHHHH-
Q 039262 364 --S---C--KRMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCS-LYPEDYRISKENLIDCW- 434 (885)
Q Consensus 364 --~---~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~w- 434 (885)
. + .-+.+.+..++.... ...+.-++..|+. +.+..+..++ ++.....+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 1 124556665554432 1245567788998 6666666555 44322344444333332
Q ss_pred ---HHcCCccCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 435 ---IGEGFLNESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 435 ---~a~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
-..| ..+ ........+++.|...++++..
T Consensus 320 ~~~~~~~-~~~----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEH----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCC----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCC----CCHHHHHHHHHHHHhCCCeEEE
Confidence 1122 111 1235667889999999999874
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.36 E-value=3.6e-12 Score=145.69 Aligned_cols=138 Identities=25% Similarity=0.344 Sum_probs=96.8
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
+++.|++.+|.+..+|... +++|++|++++| .+..+| ..+++|++|+|++| .++.+|. +++ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 6777888877777766522 477888888888 666676 24677888888888 7777776 554 788888888
Q ss_pred CCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEec
Q 039262 596 TNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLN 675 (885)
Q Consensus 596 ~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 675 (885)
|.|..+|. .+++|++|++++| .++.+|. .+++|++|++.+|.+.... . +. ++|+.|+++.|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~lp--------~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFLP--------E-LP--ESLEALDVSTN 190 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC--------C-CC--TTCCEEECCSS
T ss_pred CcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCcc--------h-hh--CCCCEEECcCC
Confidence 88877877 6778888888887 4566774 4677888888777655421 1 22 67777777777
Q ss_pred ccchhhh
Q 039262 676 NSRALHC 682 (885)
Q Consensus 676 ~~~~~~~ 682 (885)
.+..++.
T Consensus 191 ~L~~lp~ 197 (571)
T 3cvr_A 191 LLESLPA 197 (571)
T ss_dssp CCSSCCC
T ss_pred CCCchhh
Confidence 6654443
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=8.8e-13 Score=127.63 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=83.9
Q ss_pred cccceeEEEeecCCcccCCCCCCCC-CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhH-hccccCCE
Q 039262 513 KWEKVRRLSLMENQIDNLSGVPTCP-YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVI-SKLVSLQH 590 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i-~~L~~L~~ 590 (885)
.+.+++.|++.+|.+..++.+..+. +|++|++++| .+..++ .|..+++|++|+|++| .++.+|..+ +.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCE
Confidence 3456777777777777666554444 7777777777 555552 3667777777777777 666666444 67777777
Q ss_pred eecCCCCccccch--hhhccCCCcEEecCCccccccccch---hhcCCCCCcEEEeeccc
Q 039262 591 LDLSDTNVAVLPK--ELNALVNLKCLNLENAWMLTVIPRR---LISSFSSLHVLRMFGIG 645 (885)
Q Consensus 591 L~L~~~~i~~Lp~--~l~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~ 645 (885)
|+|++|.|..+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++..+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777777777775 6677777777777777 34555543 35566666666665543
No 128
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=3.2e-12 Score=146.04 Aligned_cols=187 Identities=22% Similarity=0.224 Sum_probs=126.6
Q ss_pred CCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEec
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNL 616 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l 616 (885)
.+|+.|++++| .+..+|..+ +++|++|+|++| .++.+| +.+++|++|+|++|+|..+|. +.+ +|++|++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCC-CCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 37888888888 677777764 367888888888 788888 557888888888888888887 554 8888888
Q ss_pred CCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhccccccccceee
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLSSHRLRSCTQAL 696 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 696 (885)
++| .+..+|. .+++|++|++.+|.+.... . .+++|+.|+++.|.+..
T Consensus 128 s~N-~l~~lp~----~l~~L~~L~Ls~N~l~~lp---------~--~l~~L~~L~Ls~N~L~~----------------- 174 (571)
T 3cvr_A 128 DNN-QLTMLPE----LPALLEYINADNNQLTMLP---------E--LPTSLEVLSVRNNQLTF----------------- 174 (571)
T ss_dssp CSS-CCSCCCC----CCTTCCEEECCSSCCSCCC---------C--CCTTCCEEECCSSCCSC-----------------
T ss_pred CCC-cCCCCCC----cCccccEEeCCCCccCcCC---------C--cCCCcCEEECCCCCCCC-----------------
Confidence 888 5666775 5788888888877654321 1 34566666665554332
Q ss_pred EecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCCc-cCCCCCc
Q 039262 697 YLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLTF-LAFAPNL 775 (885)
Q Consensus 697 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~~-l~~l~~L 775 (885)
++. +. ++|+.|++++|. +..++. +... .....+.|+.|+|++| .++.+|. +..+++|
T Consensus 175 ----------lp~--l~--~~L~~L~Ls~N~-L~~lp~-~~~~-----L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 175 ----------LPE--LP--ESLEALDVSTNL-LESLPA-VPVR-----NHHSEETEIFFRCREN-RITHIPENILSLDPT 232 (571)
T ss_dssp ----------CCC--CC--TTCCEEECCSSC-CSSCCC-CC-------------CCEEEECCSS-CCCCCCGGGGGSCTT
T ss_pred ----------cch--hh--CCCCEEECcCCC-CCchhh-HHHh-----hhcccccceEEecCCC-cceecCHHHhcCCCC
Confidence 221 22 678888888773 444432 1100 0001233499999985 7888875 7779999
Q ss_pred ceEeEecccccccc
Q 039262 776 KSIEVNSCHGIQEI 789 (885)
Q Consensus 776 ~~L~L~~~~~l~~i 789 (885)
+.|+|++|+.-..+
T Consensus 233 ~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 233 CTIILEDNPLSSRI 246 (571)
T ss_dssp EEEECCSSSCCHHH
T ss_pred CEEEeeCCcCCCcC
Confidence 99999997544433
No 129
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.34 E-value=7.3e-11 Score=130.26 Aligned_cols=287 Identities=13% Similarity=0.084 Sum_probs=178.7
Q ss_pred CcccchHHHHHHHHHHHcc----CCCc--EEEEEcCCCCcHHHHHHHHHHhhcCCCCC-CCEEEEEEEcCccCHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAG--IVGLYGMGGVGKTTLMALINNKFLGSPTN-FDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~ 227 (885)
+.++||+++++++.+++.. .... .+.|+|++|+||||+|+.+++... .. -..++|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHHH
Confidence 5799999999999998865 3334 899999999999999999999872 22 235778887787888899999
Q ss_pred HHHHcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccch--hcccccccCCCCCCC---CCcEEEEecCChhHh
Q 039262 228 IGEKIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWER--VDLSKVGIPLPGRLN---NKSKVVFTTRSEEVC 300 (885)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~---~gs~iivTtR~~~v~ 300 (885)
++..++..... ...+..+....+.+.+. +++.+|||||++.. .....+...+..... .+..||+||+.....
T Consensus 94 l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 94 IARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 99988654321 22334455555555554 56889999999653 233333333320111 467788888776443
Q ss_pred hhcc-------CcceEEeccCChhhHHHHHHHHhcC---CccCCCchhHHHHHHHHHHh---------CCchhHHHHHHH
Q 039262 301 GLME-------AHKKFKVECLSHNDAWELFRQKVGG---ETLNCHPDILELAETVAKEC---------GGLPLALITIGR 361 (885)
Q Consensus 301 ~~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~~~l~~~~~~i~~~c---------~GlPLai~~~~~ 361 (885)
..+. ....+.+.+++.++..+++...+.. .. ..+ .+....+++.+ +|.|..+..+..
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~ 248 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYS---EDILQMIADITGAQTPLDTNRGDARLAIDILY 248 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Confidence 2221 1236899999999999999987632 11 112 45678899999 788765543332
Q ss_pred Hhc------CC--CChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCC---CCcccchHHH
Q 039262 362 AMS------CK--RMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYP---EDYRISKENL 430 (885)
Q Consensus 362 ~l~------~~--~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~l 430 (885)
... .. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+
T Consensus 249 ~a~~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i 314 (389)
T 1fnn_A 249 RSAYAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDA 314 (389)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHH
Confidence 211 11 12233333222211 1122334567887 6777777676543 2214555555
Q ss_pred HHHHHH----cCCccCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 431 IDCWIG----EGFLNESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 431 i~~w~a----~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
...+.. .|... -.......++++|...+++...
T Consensus 315 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 315 EESYKIVCEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 554422 22111 1134567889999999999874
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=3.1e-12 Score=139.35 Aligned_cols=156 Identities=23% Similarity=0.230 Sum_probs=124.8
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhc-CCCcccEEEecCCCccccCc-hhHhccccCCEeecCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQ-CMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSD 595 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~-~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~ 595 (885)
+.+++.++.+..+|.. -.+.++.|+|++| .+..++...|. .+++|++|+|++| .+..+| ..+.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 5788888888888752 2356899999999 78888888787 9999999999999 788876 4699999999999999
Q ss_pred CCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEe
Q 039262 596 TNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTL 674 (885)
Q Consensus 596 ~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 674 (885)
|+|..+|. .+..+++|++|+|++| .+..+++..+..+++|++|++.+|.+.... ...+..+..+++|+.|+++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFP----VELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCC----GGGTC----CTTCCEEECCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeC----HHHhcCcccCCcCCEEECCC
Confidence 99999985 5899999999999999 567776666899999999999998876522 11122236788999999988
Q ss_pred cccchhh
Q 039262 675 NNSRALH 681 (885)
Q Consensus 675 ~~~~~~~ 681 (885)
|.+..++
T Consensus 173 N~l~~l~ 179 (361)
T 2xot_A 173 NKLKKLP 179 (361)
T ss_dssp SCCCCCC
T ss_pred CCCCccC
Confidence 8766543
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=2.4e-11 Score=133.97 Aligned_cols=291 Identities=12% Similarity=0.083 Sum_probs=172.6
Q ss_pred CcccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
..++||+++++.+.+++.. ...+.+.|+|++|+||||||+.+++........-..++|+.+....+...++..++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999998873 456789999999999999999999876210000235778887777777888888888
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh------cccccccCCCCCCCCCcEEEEecCChhHhhh
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV------DLSKVGIPLPGRLNNKSKVVFTTRSEEVCGL 302 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~iivTtR~~~v~~~ 302 (885)
.++..... ...+..+....+.+.+. +++.+||+|+++... .+..+...+......+..+|+||+.......
T Consensus 100 ~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 100 SLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp TTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred HhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 87653221 22234454555666554 458999999996532 1222222121002345677888887643222
Q ss_pred cc-------CcceEEeccCChhhHHHHHHHHhcCC--ccCCCchhHHHHHHHHHHhC---CchhHHHHH-HHHh--c---
Q 039262 303 ME-------AHKKFKVECLSHNDAWELFRQKVGGE--TLNCHPDILELAETVAKECG---GLPLALITI-GRAM--S--- 364 (885)
Q Consensus 303 ~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~~~l~~~~~~i~~~c~---GlPLai~~~-~~~l--~--- 364 (885)
+. ....+.+++++.++..+++.+.+... ....+ .+..+.+++.++ |.|..+..+ .... .
T Consensus 179 ~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 179 LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 21 11478999999999999999865311 11122 445677777777 999844332 2221 1
Q ss_pred C--CCChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHhcCCC-C-cccchHHHHHHH--HH--
Q 039262 365 C--KRMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCSLYPE-D-YRISKENLIDCW--IG-- 436 (885)
Q Consensus 365 ~--~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--~a-- 436 (885)
. .-+.+.+..++.... ...+.-++..+|. +.+..+..++...+ + ..+....+.+.. ++
T Consensus 256 ~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 124455555444322 2345566778887 66666665653211 1 123333332221 11
Q ss_pred cCCccCcchhhHHHHHHHHHHHHHHccccccc
Q 039262 437 EGFLNESVNFGVQKEGYHIVGTLVHACLLEEV 468 (885)
Q Consensus 437 ~g~i~~~~~~~~~~~~~~~l~~L~~~sll~~~ 468 (885)
.| +.+ -.......+++.|...++++..
T Consensus 322 ~g-~~~----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VEA----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CCC----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CCC----CCHHHHHHHHHHHHhCCCEEEE
Confidence 12 111 1124566789999999999763
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=3.4e-12 Score=122.45 Aligned_cols=136 Identities=21% Similarity=0.182 Sum_probs=111.3
Q ss_pred CCCCceeeeccCCcccc--ccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccc-cchhhhccCCC
Q 039262 535 TCPYLLTLFLNNNKQLL--IMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAV-LPKELNALVNL 611 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~l~~L~~L 611 (885)
..++|+.|++++| .+. .+|.. +..+++|++|+|++| .++.+ ..++.+++|++|++++|.+.. +|..+.++++|
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCC-CCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 4478999999999 666 67665 789999999999999 78888 688999999999999999988 78888889999
Q ss_pred cEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccch
Q 039262 612 KCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
++|++++| .+..+|. ..+..+++|++|++.+|.+.... ......+..+++|+.|+++.+....
T Consensus 98 ~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~----~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 98 THLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN----DYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST----THHHHHHTTCSSCCEETTEETTSCB
T ss_pred CEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH----HHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999 6777763 34889999999999998876532 0001367889999999988776544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.4e-11 Score=117.67 Aligned_cols=127 Identities=22% Similarity=0.326 Sum_probs=104.4
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~ 596 (885)
+.+.+.++.+..+|. .-.++|+.|++++| .+..++...|..+++|++|+|++| .++.+|.. ++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC
Confidence 467777777777764 23478999999998 677888877889999999999999 78887755 688999999999999
Q ss_pred Cccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 597 NVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 597 ~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
.+..+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99888865 688999999999998 6778888767889999999998876543
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.26 E-value=2.1e-11 Score=119.65 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=90.0
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~ 596 (885)
+.+.+.++.+..+|.. -.++|++|++++| .+..+|. .|.++++|++|+|++| .++.++ ..+.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~-~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPK-ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCG-GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHH-HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 3566666777766642 2357888888887 6667774 4777888888888888 666665 45777888888888888
Q ss_pred Cccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 597 NVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 597 ~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
.|..+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++.+|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 8877764 5777888888888887 566777766777778888877776554
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.4e-11 Score=120.90 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=101.7
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCch-hhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRG-FFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSD 595 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~-~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~ 595 (885)
+.++++++.+..+|.. -..+|++|++++| .+..++.. +|..+++|++|+|++| .++.+ |..++.+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 5678888888877762 2348999999999 67777653 5889999999999999 77766 77889999999999999
Q ss_pred CCccccchh-hhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 596 TNVAVLPKE-LNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 596 ~~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
|+|..+|.. +..+++|++|++++| .+..+++..+..+++|++|++.+|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999888754 888999999999999 4555544458889999999998877654
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=2.3e-11 Score=119.34 Aligned_cols=125 Identities=24% Similarity=0.323 Sum_probs=108.0
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccc-hhhhccCCCcEEecCC
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLP-KELNALVNLKCLNLEN 618 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~ 618 (885)
++++++++ .+..+|..++ ++|++|+|++| .++.+|..+..+.+|++|+|++|.|..++ ..+.++++|++|++++
T Consensus 13 ~~l~~~~~-~l~~ip~~~~---~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP---RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCC-CCCcCCCCCC---CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67889888 7888887643 68999999999 89999999999999999999999999998 4699999999999999
Q ss_pred ccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEeccc
Q 039262 619 AWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNS 677 (885)
Q Consensus 619 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 677 (885)
| .+..+|+..+..+++|++|++.+|.+... ....+..+++|+.|++++|..
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVV-------PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSCCCBC-------CTTTTTTCTTCCEEECCSSCE
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCCCCee-------ChhhhhcCccccEEEeCCCCe
Confidence 9 67888877789999999999999887642 233477889999999988765
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=7.3e-12 Score=117.44 Aligned_cols=129 Identities=21% Similarity=0.207 Sum_probs=103.2
Q ss_pred CCCCceeeeccCCcccc--ccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccc-cchhhhccCCC
Q 039262 535 TCPYLLTLFLNNNKQLL--IMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAV-LPKELNALVNL 611 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~-Lp~~l~~L~~L 611 (885)
..++|+.|++++| .+. .+|. .+..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCC-cCChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 4478999999999 566 6666 4789999999999999 88888 678999999999999999988 88888889999
Q ss_pred cEEecCCccccccccc-hhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEE
Q 039262 612 KCLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSL 672 (885)
Q Consensus 612 ~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 672 (885)
++|++++| .+..+|. ..++.+++|++|++.+|.+.... ......+..+++|+.|++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~----~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLN----DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGST----THHHHHHHHCTTCCEETT
T ss_pred CEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchH----HHHHHHHHHCCCcccccC
Confidence 99999999 5676651 33889999999999998776432 000135677777877754
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.21 E-value=2.8e-11 Score=116.94 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=108.2
Q ss_pred cEEEEcCCccCCCCCccccc-ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCc
Q 039262 496 DYLVYAGARLSEAPDVRKWE-KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQ 574 (885)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~-~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~ 574 (885)
..+...+..+..++...... +++.|++++|.+..++.+..+++|++|++++| .+..+|+.+|..+++|++|+|++| .
T Consensus 22 ~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~ 99 (176)
T 1a9n_A 22 RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-S 99 (176)
T ss_dssp EEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-C
T ss_pred eEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-c
Confidence 34555566666666665555 99999999999999888899999999999999 788888887899999999999999 8
Q ss_pred cccCch--hHhccccCCEeecCCCCccccchh----hhccCCCcEEecCCcc
Q 039262 575 LFYFPL--VISKLVSLQHLDLSDTNVAVLPKE----LNALVNLKCLNLENAW 620 (885)
Q Consensus 575 i~~lp~--~i~~L~~L~~L~L~~~~i~~Lp~~----l~~L~~L~~L~l~~~~ 620 (885)
++.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 100 i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 100 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 899987 899999999999999999999975 8999999999999984
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=1.5e-10 Score=118.56 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=116.7
Q ss_pred CcccchHHHHHHHHHHHccCC-CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEP-AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++... ....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~-~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH-CTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-CCCCCCC------CCCcccHH-HHHHhccCC
Confidence 358999999999999987653 46899999999999999999998762 1111100 00000000 011111000
Q ss_pred CCCccc--cccchhHHHHHHHHHh-----ccCcEEEEEccccc--hhcccccccCCCCCCCCCcEEEEecCChhHh-h-h
Q 039262 234 LVNDTW--KNRRTEQKALDIFRNL-----KEKKFVLLLDDIWE--RVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC-G-L 302 (885)
Q Consensus 234 ~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~-~-~ 302 (885)
...-.. ...........+.+.+ .+++.+||+||++. ...+..+...+. ....+..+|+||+..... . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHHH
Confidence 000000 0001111122222222 34679999999964 334444444443 334578888888765321 1 1
Q ss_pred ccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHh
Q 039262 303 MEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAM 363 (885)
Q Consensus 303 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l 363 (885)
......+.+.+++.++..+++.+.+.......+ .+....|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 122467899999999999999988743322222 3457899999999999987765443
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.1e-11 Score=144.72 Aligned_cols=115 Identities=26% Similarity=0.262 Sum_probs=69.7
Q ss_pred cCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecCCccccccccchhhcC
Q 039262 553 MDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISS 632 (885)
Q Consensus 553 ~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~ 632 (885)
+++..|..++.|++|+|++| .+..+|..+.++.+|++|+|++|.|..+|..+++|++|++|+|++| .+..+|.. ++.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcC
Confidence 33444666666777777766 5666666666666777777777766666666666677777777666 34566655 566
Q ss_pred CCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccc
Q 039262 633 FSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 633 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
|++|++|++.+|.+.. .+..++.|++|+.|+++.|.+.
T Consensus 292 l~~L~~L~L~~N~l~~--------lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT--------LPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GTTCSEEECCSSCCCC--------CCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCCCEEECCCCCCCc--------cChhhhcCCCccEEeCCCCccC
Confidence 6667777666665432 2334666666666666666554
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=2.4e-11 Score=119.27 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=106.9
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh--HhccccCCEeecCCCCcccc-chhhhccCCCcEEec
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV--ISKLVSLQHLDLSDTNVAVL-PKELNALVNLKCLNL 616 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~--i~~L~~L~~L~L~~~~i~~L-p~~l~~L~~L~~L~l 616 (885)
++++++++ .+..+|..++ .+|++|+|++| .++.+|.. ++.+++|++|+|++|.|..+ |..+..+++|++|++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 78999999 7888987643 38999999999 88888764 89999999999999999888 678999999999999
Q ss_pred CCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccc
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
++| .+..+++..+..+++|++|++.+|.+... ....+..+++|+.|++++|...
T Consensus 86 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV-------MPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE-------CTTSSTTCTTCCEEECTTCCBC
T ss_pred CCC-cCCccCHHHhcCCCCCCEEECCCCcCCee-------CHHHhhcCCCCCEEEeCCCCcc
Confidence 999 57777776688999999999999887652 3455778889999998877653
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2.4e-11 Score=144.30 Aligned_cols=109 Identities=28% Similarity=0.354 Sum_probs=66.1
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcE
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKC 613 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~ 613 (885)
..+++|++|+|++| .+..+|..++ .+++|++|+|++| .++.+|..+++|.+|++|+|++|.|..+|..+++|++|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 45556666666666 4555555533 5666666666666 5556666666666666666666666666666666666666
Q ss_pred EecCCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 614 LNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 614 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
|+|++| .+..+|.. ++.|++|++|++.+|.+.
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 666666 44566655 566666666666665543
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=4.4e-11 Score=137.49 Aligned_cols=119 Identities=23% Similarity=0.217 Sum_probs=69.7
Q ss_pred ceeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCC
Q 039262 516 KVRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSD 595 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~ 595 (885)
.++.|++++|.+..+|.+..+++|+.|++++| .+..+|.. |..+++|++|+|++| .++.+| .++.+++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcc-cccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 35566666666666665556666666666666 45555553 556666666666666 555566 566666666666666
Q ss_pred CCcccc--chhhhccCCCcEEecCCccccccccch---hhcCCCCCcEE
Q 039262 596 TNVAVL--PKELNALVNLKCLNLENAWMLTVIPRR---LISSFSSLHVL 639 (885)
Q Consensus 596 ~~i~~L--p~~l~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L 639 (885)
|.|..+ |..++.|++|++|++++| .+..+|+. ++..+++|+.|
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCcc
Confidence 666665 566666666666666666 33444431 12234555555
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=6.4e-11 Score=136.11 Aligned_cols=123 Identities=20% Similarity=0.200 Sum_probs=101.1
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecC
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLE 617 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~ 617 (885)
.|++|++++| .+..+|. |..+++|++|+|++| .++.+|..++.+++|++|+|++|.|+.+| .+++|++|++|+++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 4899999999 7888875 889999999999999 88899999999999999999999999999 89999999999999
Q ss_pred Cccccccc--cchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEE
Q 039262 618 NAWMLTVI--PRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLS 671 (885)
Q Consensus 618 ~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 671 (885)
+| .+..+ |.. ++.+++|++|++.+|.+..... ....-+..+++|+.|+
T Consensus 517 ~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSIL 566 (567)
T ss_dssp SS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEE
T ss_pred CC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccC
Confidence 99 56777 554 8899999999999988765321 1112233467777664
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=3.6e-12 Score=125.92 Aligned_cols=109 Identities=21% Similarity=0.219 Sum_probs=79.9
Q ss_pred CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCc
Q 039262 533 VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLK 612 (885)
Q Consensus 533 ~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~ 612 (885)
+..+++|++|++++| .+..+| .+..+++|++|++++| .++.+|..+..+++|++|++++|.+..+| .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEKIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEE-EESCCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCC-CCcccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence 356677888888877 566666 3677788888888888 77777777777788888888888877777 577778888
Q ss_pred EEecCCccccccccc-hhhcCCCCCcEEEeeccccc
Q 039262 613 CLNLENAWMLTVIPR-RLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 613 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~ 647 (885)
+|++++| .+..+|. ..+..+++|++|++.+|.+.
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 8888877 4555553 33677778888888776553
No 146
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=4.8e-10 Score=113.00 Aligned_cols=183 Identities=12% Similarity=0.081 Sum_probs=114.4
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|+++.++.+.+++.....+.+.|+|.+|+|||++|+.+++... ...+. ..+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhc
Confidence 46899999999999999876665699999999999999999998751 11111 2333333333332222222211111
Q ss_pred CCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChhHh--hhccCcceE
Q 039262 234 LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEEVC--GLMEAHKKF 309 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v~--~~~~~~~~~ 309 (885)
... .-.+++.+||+||++.. ...+.+...+. ....+.++|+||+..... ........+
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 000 01256889999999653 22333333333 234567888888765321 111223478
Q ss_pred EeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 310 KVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 310 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
.+.+++.++..+++.+.+.......+ .+....+++.++|.|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999987743221122 3457888999999998654443
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=3.4e-10 Score=109.42 Aligned_cols=121 Identities=23% Similarity=0.330 Sum_probs=102.6
Q ss_pred EEEcCCccCCCCCcccccceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcc
Q 039262 498 LVYAGARLSEAPDVRKWEKVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQL 575 (885)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i 575 (885)
+...+.++..+|. ...+++++|.+.+|.+..++. +..+++|++|++++| .+..++...|..+++|++|+|++| .+
T Consensus 12 l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l 88 (177)
T 2o6r_A 12 IRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KL 88 (177)
T ss_dssp EECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred EEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-Cc
Confidence 3444555666653 344789999999999988765 578899999999999 788898888899999999999999 88
Q ss_pred ccCchh-HhccccCCEeecCCCCccccchh-hhccCCCcEEecCCccc
Q 039262 576 FYFPLV-ISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENAWM 621 (885)
Q Consensus 576 ~~lp~~-i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~~~ 621 (885)
+.+|.. +..+++|++|++++|.+..+|.. +..+++|++|++++|..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 888765 68999999999999999999976 58899999999999954
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.08 E-value=3.4e-10 Score=121.52 Aligned_cols=121 Identities=13% Similarity=0.145 Sum_probs=72.9
Q ss_pred cccceeEEEeecCCc-ccCCCCCC-CCCceeeeccCCcccc--ccCchhhcCCCcccEEEecCCCccccCchhHhc----
Q 039262 513 KWEKVRRLSLMENQI-DNLSGVPT-CPYLLTLFLNNNKQLL--IMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISK---- 584 (885)
Q Consensus 513 ~~~~lr~L~l~~~~~-~~l~~~~~-~~~Lr~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~---- 584 (885)
.+.++++|.+.++-- ..+..+.. +++|++|+|++| .+. ..+.. .++.++++.+..+ .+. +..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~---~~~~~~~~~~~~~-~I~--~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAG---TYPNGKFYIYMAN-FVP--AYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSS---SSGGGCCEEECTT-EEC--TTTTEEEETT
T ss_pred hhCceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccc---ccccccccccccc-ccC--HHHhcccccc
Confidence 345677777775410 11111122 677888888887 444 22222 2233555555555 222 123555
Q ss_pred ----cccCCEeecCCCCccccch-hhhccCCCcEEecCCccccccccchhhcCCCCCcEEEee
Q 039262 585 ----LVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMF 642 (885)
Q Consensus 585 ----L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (885)
+.+|+.|+|++ .++.++. .+.++++|+.|++.++ .+..++...+..+.++..+...
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence 88888888888 7888874 4788888888888887 4567777667776666655443
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=3.3e-10 Score=108.88 Aligned_cols=101 Identities=24% Similarity=0.358 Sum_probs=55.2
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCCCccccchh-hhccCCCcEEecC
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLE 617 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~ 617 (885)
+.+++++| .+..+|..+. ++|++|+|++| .+..+ |..++++++|++|+|++|+|..+|.. +.++++|++|+++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~---~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP---TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC---TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCC-CCCccCCCcC---CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 44555555 4455554421 45556666665 45444 34455566666666666666555543 3555666666666
Q ss_pred CccccccccchhhcCCCCCcEEEeecccc
Q 039262 618 NAWMLTVIPRRLISSFSSLHVLRMFGIGY 646 (885)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 646 (885)
+| .+..+|++.+..+++|++|++.+|.+
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCc
Confidence 55 44555554455566666666655544
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=4.1e-10 Score=107.84 Aligned_cols=103 Identities=26% Similarity=0.385 Sum_probs=61.4
Q ss_pred ceeeeccCCccccccCchhhcCCCcccEEEecCCCccccC-chhHhccccCCEeecCCCCccccchh-hhccCCCcEEec
Q 039262 539 LLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYF-PLVISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNL 616 (885)
Q Consensus 539 Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~l-p~~i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l 616 (885)
.+++++++| .+..+|..+ .++|++|+|++| .++.+ |..+..+.+|++|+|++|+|..+|.. +..+++|++|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTS-CCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCC-CcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 345566665 555555442 255666666666 55555 44466666666666666666666643 456666666666
Q ss_pred CCccccccccchhhcCCCCCcEEEeeccccc
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYS 647 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~ 647 (885)
++| .+..+|++.+..+++|++|++.+|.+.
T Consensus 86 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666 455566555566666666666665543
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=8.9e-10 Score=118.23 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=73.1
Q ss_pred ccceeEEEeecCCcccCCC-CCCCCCceeeeccCCccccccCchhhcC--------CCcccEEEecCCCccccCch-hHh
Q 039262 514 WEKVRRLSLMENQIDNLSG-VPTCPYLLTLFLNNNKQLLIMDRGFFQC--------MPRLKVLNLSGAKQLFYFPL-VIS 583 (885)
Q Consensus 514 ~~~lr~L~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~l~~~~~~~~~~--------l~~Lr~L~Ls~~~~i~~lp~-~i~ 583 (885)
+++++.|++++|.+..+.. ...++.++.+.+..+ .+|...|.+ |++|+.|+|.+ .++.+++ .+.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 4689999999998873211 123333566666665 678888999 99999999998 4666654 588
Q ss_pred ccccCCEeecCCCCccccch-hhhccCCCcEEecCC
Q 039262 584 KLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNLEN 618 (885)
Q Consensus 584 ~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l~~ 618 (885)
+|.+|+.|++++|.+..++. .+..+.++.++.+..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 99999999999999988874 467767777776654
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.04 E-value=6.7e-10 Score=106.70 Aligned_cols=106 Identities=24% Similarity=0.325 Sum_probs=91.7
Q ss_pred eEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCCC
Q 039262 518 RRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSDT 596 (885)
Q Consensus 518 r~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~~ 596 (885)
+.+.+.++.+..+|... .++|++|++++| .+..+++..|.++++|++|+|++| .++.+|.. +.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 57888888888887632 389999999999 788888777999999999999999 89999876 589999999999999
Q ss_pred Cccccchh-hhccCCCcEEecCCccccccccc
Q 039262 597 NVAVLPKE-LNALVNLKCLNLENAWMLTVIPR 627 (885)
Q Consensus 597 ~i~~Lp~~-l~~L~~L~~L~l~~~~~l~~lp~ 627 (885)
.|..+|.. +..+++|++|++++|. +...+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 99999975 8999999999999994 454443
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.99 E-value=1.8e-08 Score=110.49 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=48.1
Q ss_pred CceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCCCccccchhhhccCCCcEEec
Q 039262 538 YLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNL 616 (885)
Q Consensus 538 ~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l 616 (885)
+|+.+.+..+ +..++...|.++ +|+.+.+..+ +..++ ..+.++.+|+.++|++|++..+|...-...+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEe
Confidence 4555555443 444555445443 3555555542 33332 3355555555555555555555543323455555555
Q ss_pred CCccccccccchhhcCCCCCcEEEee
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMF 642 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~ 642 (885)
..+ +..++...+.++++|+.+.+.
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCEECC
T ss_pred CCc--hheehhhHhhCCCCCCEEecC
Confidence 432 444554445555555555443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.1e-09 Score=104.97 Aligned_cols=101 Identities=23% Similarity=0.332 Sum_probs=88.9
Q ss_pred eeEEEeecCCcccCCCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchh-HhccccCCEeecCC
Q 039262 517 VRRLSLMENQIDNLSGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLV-ISKLVSLQHLDLSD 595 (885)
Q Consensus 517 lr~L~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~-i~~L~~L~~L~L~~ 595 (885)
.+.+++++|.+..+|... .++|++|++++| .+..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 357888889888887532 489999999999 788888878999999999999999 88888875 58999999999999
Q ss_pred CCccccchh-hhccCCCcEEecCCcc
Q 039262 596 TNVAVLPKE-LNALVNLKCLNLENAW 620 (885)
Q Consensus 596 ~~i~~Lp~~-l~~L~~L~~L~l~~~~ 620 (885)
|+|..+|.. +..+++|++|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 999999864 8999999999999994
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.98 E-value=2.7e-11 Score=119.60 Aligned_cols=129 Identities=20% Similarity=0.159 Sum_probs=104.1
Q ss_pred ceeeeccCC-ccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeecCCCCccccchhhhccCCCcEEecC
Q 039262 539 LLTLFLNNN-KQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDLSDTNVAVLPKELNALVNLKCLNLE 617 (885)
Q Consensus 539 Lr~L~l~~~-~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~~L~~L~l~ 617 (885)
|+.+.+.++ +.+..+|. .+..+++|++|+|++| .++.+| .++.+++|++|++++|.+..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhH-HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 444444433 13445554 4889999999999999 888999 8999999999999999999999988889999999999
Q ss_pred CccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccch
Q 039262 618 NAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRA 679 (885)
Q Consensus 618 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 679 (885)
+| .+..+|. ++.+++|++|++.+|.+.... .+..+..+++|+.|++++|....
T Consensus 102 ~N-~l~~l~~--~~~l~~L~~L~l~~N~i~~~~------~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 102 YN-QIASLSG--IEKLVNLRVLYMSNNKITNWG------EIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EE-ECCCHHH--HHHHHHSSEEEESEEECCCHH------HHHHHTTTTTCSEEEECSCHHHH
T ss_pred CC-cCCcCCc--cccCCCCCEEECCCCcCCchh------HHHHHhcCCCCCEEEecCCcccc
Confidence 99 6777874 889999999999998765421 23568889999999998886543
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=4.4e-09 Score=112.55 Aligned_cols=184 Identities=15% Similarity=0.165 Sum_probs=113.7
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+. ..+++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL--GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH--GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 46899999999999999887665699999999999999999998851 11111 2333333332222111 11111110
Q ss_pred CCCccccccchhHHHHHHHHHh-ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChhH-hh-hccCcce
Q 039262 234 LVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEEV-CG-LMEAHKK 308 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~-~~~~~~~ 308 (885)
.. ...+ .+++.++|+||++.. ..+..+...+. ....++.+|+||+...- .. .......
T Consensus 98 ~~----------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 98 QK----------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HB----------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred hc----------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceE
Confidence 00 0001 346889999999753 33444433333 33456788888876432 11 1123457
Q ss_pred EEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH-HHHHHH
Q 039262 309 FKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA-LITIGR 361 (885)
Q Consensus 309 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa-i~~~~~ 361 (885)
+.+.+++.++..+++...+.......+ .+....+++.++|.|.. +..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 899999999999999987642221122 34578899999999954 444433
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.88 E-value=4.9e-08 Score=107.02 Aligned_cols=237 Identities=11% Similarity=0.162 Sum_probs=155.4
Q ss_pred ceeEEEeecCCcccCCC--CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEeec
Q 039262 516 KVRRLSLMENQIDNLSG--VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLDL 593 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~L 593 (885)
+++.+.+..+ +..++. +.+ .+|+.+.+.+ .+..++...|.+|.+|+.++|++| .++.+|.......+|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 5677776544 555533 445 4799999986 478888888999999999999998 88988877666799999999
Q ss_pred CCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEE
Q 039262 594 SDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSL 672 (885)
Q Consensus 594 ~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 672 (885)
.. .++.++ ..+.++.+|+.+++..+ +..++...+.+ .+|+.+.+..+ +.. .....+..+++|+.+.+
T Consensus 211 p~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~-------I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 211 PV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTN-------IASRAFYYCPELAEVTT 278 (401)
T ss_dssp CT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCE-------ECTTTTTTCTTCCEEEE
T ss_pred CC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccE-------EChhHhhCCCCCCEEEe
Confidence 85 488887 56889999999999875 67888877777 78999998542 211 12345778888988888
Q ss_pred EecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcc
Q 039262 673 TLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSL 752 (885)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L 752 (885)
..+.... .....++...+.+|++|+.+.+.+ .+..+...... .+.+|
T Consensus 279 ~~~~~~~----------------------~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~---------~c~~L 325 (401)
T 4fdw_A 279 YGSTFND----------------------DPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLG---------GNRKV 325 (401)
T ss_dssp ESSCCCC----------------------CTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT---------TCCSC
T ss_pred CCccccC----------------------CcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhc---------CCCCc
Confidence 7544320 011122333566666777776653 24444332222 35667
Q ss_pred cEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCC-ccceeecC
Q 039262 753 RKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFA-KLQYLGLS 812 (885)
Q Consensus 753 ~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p-~L~~L~L~ 812 (885)
+.|.|.+ +++.++ .+..+ +|+.|.+.++ .+..+.. ..+.++| +++.|.+-
T Consensus 326 ~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~------~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 326 TQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFE------KVWYGFPDDITVIRVP 378 (401)
T ss_dssp CEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCC------SSCCCSCTTCCEEEEC
T ss_pred cEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCccccc------ccccCCCCCccEEEeC
Confidence 7777744 344443 24555 6777777664 3333332 2344553 45666554
No 158
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.87 E-value=2.2e-08 Score=107.15 Aligned_cols=261 Identities=15% Similarity=0.102 Sum_probs=139.4
Q ss_pred CcccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
..++|++..++.+...+.. .....|.|+|++|+|||++|+.+++.. ... .+++..+.......+...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHH
Confidence 4689999999988887753 344678999999999999999999886 221 23444333222222211110
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--cccccccCC--------CCC---------CCCCcEE
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--DLSKVGIPL--------PGR---------LNNKSKV 290 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l--------~~~---------~~~gs~i 290 (885)
. . ..++.+|++||+.... ....+...+ ... ...+.++
T Consensus 86 ~-----------------------~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 86 N-----------------------S-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp T-----------------------T-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred H-----------------------h-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 0 0 1245577788875421 111111000 000 0124566
Q ss_pred EEecCChh-Hhhhc-cC-cceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHHhcCC-
Q 039262 291 VFTTRSEE-VCGLM-EA-HKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRAMSCK- 366 (885)
Q Consensus 291 ivTtR~~~-v~~~~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~l~~~- 366 (885)
|.||.... +...+ .. ...+.+.+++.+|...++.+.+.......+ .+....+++.++|.|..+..+...+...
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 66665432 21111 11 257899999999999999988754332222 3567889999999998886665444211
Q ss_pred -------CChHHHHHHHHHHhccCCCCCCCCcchhhhHHhhhcCCChhhHHHHHHHHh-cCCCC----------cccchH
Q 039262 367 -------RMPEEWSYAIQVLRTSSSQFPGLGNEVYPLLKFSYDNLPNETIRSCLLYCS-LYPED----------YRISKE 428 (885)
Q Consensus 367 -------~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~----------~~i~~~ 428 (885)
-+.+....+...+. ..+..++. ..+..+..+. .|..+ ..+++.
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~------------------~~~~~l~~-~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~ 279 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALG------------------LDELGLEK-RDREILEVLILRFGGGPVGLATLATALSEDPG 279 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHT------------------CCTTCCCH-HHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHH
T ss_pred HHhcCCCCCHHHHHHHHHHhc------------------ccccCCCH-HHHHHHHHHHHHhcCCCchHHHHHHHhCCCHH
Confidence 13333333333221 12223443 2333333222 22211 123333
Q ss_pred HHHH----HHHHcCCccC-cchhhHHHHHHHHHH-HHHHcccccc
Q 039262 429 NLID----CWIGEGFLNE-SVNFGVQKEGYHIVG-TLVHACLLEE 467 (885)
Q Consensus 429 ~li~----~w~a~g~i~~-~~~~~~~~~~~~~l~-~L~~~sll~~ 467 (885)
.+.+ +-+..|++.. ..+....+.+..|++ ++.+|+|+|+
T Consensus 280 tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 280 TLEEVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHHHHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHHHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 3332 3456788765 445566788888887 8888888875
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=1.7e-08 Score=108.17 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=113.0
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++... ...+. ..+.+..+.......+ +..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVI-REKV---- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH--GGGHHHHEEEEETTCHHHHHTT-HHHH----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc--CCcccCceEEeeccccCchHHH-HHHH----
Confidence 35899999999999999887766799999999999999999998851 11111 1233332221111000 0000
Q ss_pred CCCccccccchhHHHHHHHHH--h-ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChhH-hhh-ccCc
Q 039262 234 LVNDTWKNRRTEQKALDIFRN--L-KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEEV-CGL-MEAH 306 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~~-~~~~ 306 (885)
...... + .+++.++|+||++.. .....+...+. ....++++|+||....- ... ....
T Consensus 98 ---------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 98 ---------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp ---------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred ---------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhC
Confidence 001000 1 256789999999753 23333433332 23457788888876532 111 1123
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHHHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIGRA 362 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~~~ 362 (885)
..+.+.+++.++...++...+.......+ .+....|++.++|.|..+..+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHCCCCHHHHHHHHHH
Confidence 47899999999999999988754332222 345788999999999866544433
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.68 E-value=3.5e-08 Score=106.68 Aligned_cols=98 Identities=19% Similarity=0.238 Sum_probs=63.5
Q ss_pred EEeecC-CcccCCCCCCCCCceeeeccC-CccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCC
Q 039262 520 LSLMEN-QIDNLSGVPTCPYLLTLFLNN-NKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDT 596 (885)
Q Consensus 520 L~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~ 596 (885)
+...++ .+..+|.+..+++|+.|+|++ | .+..+++..|.++++|++|+|++| .++.+| ..|++|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 566666666666777777775 5 666666666777777777777777 565544 35667777777777777
Q ss_pred CccccchhhhccCCCcEEecCCc
Q 039262 597 NVAVLPKELNALVNLKCLNLENA 619 (885)
Q Consensus 597 ~i~~Lp~~l~~L~~L~~L~l~~~ 619 (885)
+|..+|..+....+|++|+|.+|
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 77777654433333777777766
No 161
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=3.4e-08 Score=106.83 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=85.1
Q ss_pred eeeeccCCccccccCchhhcCCCcccEEEecC-CCccccCc-hhHhccccCCEeecCCCCccccch-hhhccCCCcEEec
Q 039262 540 LTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSG-AKQLFYFP-LVISKLVSLQHLDLSDTNVAVLPK-ELNALVNLKCLNL 616 (885)
Q Consensus 540 r~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~-~~~i~~lp-~~i~~L~~L~~L~L~~~~i~~Lp~-~l~~L~~L~~L~l 616 (885)
..++++++..+..+|. +..+.+|++|+|++ | .++.+| ..+++|.+|++|+|++|.|..+|. .+.+|++|++|+|
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 3457776546778887 78899999999996 7 788877 568899999999999999988874 5799999999999
Q ss_pred CCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 617 ENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 617 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
++| .+..+|++.+..++ |+.|++.+|.+..
T Consensus 88 ~~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 88 SFN-ALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSS-CCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCC-ccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999 67888887666665 9999998887654
No 162
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=2.6e-07 Score=98.39 Aligned_cols=179 Identities=12% Similarity=0.124 Sum_probs=112.0
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++... ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH--TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc--CCcccCCeEEEeCccccCh------------
Confidence 35899999999999998876665699999999999999999998851 11111 1222333221110
Q ss_pred CCCccccccchhHHHHHHHHH--h-ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hhh-hccCc
Q 039262 234 LVNDTWKNRRTEQKALDIFRN--L-KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VCG-LMEAH 306 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~-~~~~~ 306 (885)
....+........ + .+++.++|+||++.. .....+...+. ....++++|+||.... +.. .....
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0011111111111 1 256789999999643 33444544454 3445778888876543 211 11233
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
..+.+.+++.++...++.+.+.......+ .+....+++.++|.+..+...
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 57899999999999999988754332222 345788889999999865443
No 163
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.60 E-value=4.7e-07 Score=94.37 Aligned_cols=170 Identities=10% Similarity=0.056 Sum_probs=103.0
Q ss_pred cccchHHHHHHHHHHHcc----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCC--CCC-C-EEEEEEEcCccCHHHHHHH
Q 039262 156 TVVGLQSQLERVWRCLVQ----EPAGIVGLYGMGGVGKTTLMALINNKFLGSP--TNF-D-VVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f-~-~~~wv~~s~~~~~~~~~~~ 227 (885)
.+.|||+++++|...|.. +..+.+.|+|++|+|||++|+.+++...... ... + ..+.|.+....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 378999999999887754 5778899999999999999999999872111 111 1 3566776677788899999
Q ss_pred HHHHcCCCCccccccchhHHHHHHHHHh---ccCcEEEEEccccchhcccccccCC--CCCCCCCcEEEEecCChh----
Q 039262 228 IGEKIGLVNDTWKNRRTEQKALDIFRNL---KEKKFVLLLDDIWERVDLSKVGIPL--PGRLNNKSKVVFTTRSEE---- 298 (885)
Q Consensus 228 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~~~l--~~~~~~gs~iivTtR~~~---- 298 (885)
|++++..... ......+....+...+ .+++++++||+++.-..-+-+...+ +........||.++...+
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999864321 1111122233333333 4568999999996532111111111 101111222333343321
Q ss_pred -H----hhhccCcceEEeccCChhhHHHHHHHHhc
Q 039262 299 -V----CGLMEAHKKFKVECLSHNDAWELFRQKVG 328 (885)
Q Consensus 299 -v----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 328 (885)
+ ...+ ....+.+.+++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1121 124689999999999999998873
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.57 E-value=3.8e-07 Score=99.57 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=110.5
Q ss_pred CcccchHHHHHHHHHHHccCC-CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEP-AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|++..++.+...+..+. .+.+.|+|++|+||||+|+.+++... ....+. ...+... .....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~-~~~~~~---~~~~~~~----~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN-CETGIT---ATPCGVC----DNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS-CTTCSC---SSCCSSS----HHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCCCCC---CCCCccc----HHHHHHhccCC
Confidence 358999999999999987654 45789999999999999999998862 111110 0000000 01111111000
Q ss_pred CCC---ccccccchhHHHHHHHHHh-----ccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hh-h
Q 039262 234 LVN---DTWKNRRTEQKALDIFRNL-----KEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VC-G 301 (885)
Q Consensus 234 ~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~-~ 301 (885)
... +.......+ ....+.+.+ .+++.++|+||+... .....+...+. ....+..+|++|.... +. .
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~ 165 (373)
T 1jr3_A 88 VDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVT 165 (373)
T ss_dssp SSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHH
T ss_pred CceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHH
Confidence 000 000000111 122233332 246789999999642 23333433333 2344667777776443 21 1
Q ss_pred hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 302 LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 302 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
.......+.+.+++.++..+++.+.+.......+ .+....|++.++|.|..+..+.
T Consensus 166 l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 166 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 1223467899999999999999887632221112 3457889999999998876544
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.53 E-value=1.1e-07 Score=92.97 Aligned_cols=46 Identities=24% Similarity=0.391 Sum_probs=41.8
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++||+++++++.+.+.....+.+.|+|.+|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988777789999999999999999998876
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.48 E-value=2.7e-07 Score=93.87 Aligned_cols=172 Identities=8% Similarity=0.054 Sum_probs=101.6
Q ss_pred cccch---HHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 156 TVVGL---QSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 156 ~~vGr---~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
.|+|+ +..++.+..+......+.+.|+|.+|+||||+|+.+++... .....+.|+.++..... +
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~---~~~~~~~~~~~~~~~~~----------~ 95 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN---ELERRSFYIPLGIHASI----------S 95 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEGGGGGGS----------C
T ss_pred hccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEHHHHHHH----------H
Confidence 46663 35666676666665678999999999999999999998862 12234566665432110 0
Q ss_pred CCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----ccccccCCCCCCCCC-cEEEEecCChh---------
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----LSKVGIPLPGRLNNK-SKVVFTTRSEE--------- 298 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~l~~~~~~g-s~iivTtR~~~--------- 298 (885)
.+. .+.+ .++.+||+||++.... .+.+...+......+ .++|+||+...
T Consensus 96 ------------~~~----~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 96 ------------TAL----LEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ------------GGG----GTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ------------HHH----HHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000 0011 3467899999964321 122222111000122 24777776432
Q ss_pred HhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 299 VCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 299 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
+...+.....+.+.+++.++..+++...+.......+ .+....+++.++|.+-.+..+.
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 1122122367899999999999999987743221222 4567889999999887665443
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.46 E-value=2.4e-06 Score=93.82 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=68.0
Q ss_pred ccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--c
Q 039262 691 SCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--F 768 (885)
Q Consensus 691 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~ 768 (885)
..++.+.+.. +...+....+..+..|+.+...... ++... ...+.+|+.+.+.+ +++.++ .
T Consensus 253 ~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~---------F~~~~~L~~i~l~~--~i~~I~~~a 315 (394)
T 4fs7_A 253 TDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVI----VPEKT---------FYGCSSLTEVKLLD--SVKFIGEEA 315 (394)
T ss_dssp SSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSE----ECTTT---------TTTCTTCCEEEECT--TCCEECTTT
T ss_pred ccceeEEcCC--CcceeeccccccccccceeccCcee----ecccc---------cccccccccccccc--ccceechhh
Confidence 4555555543 2333443456666777766654321 11111 11467788887764 355554 3
Q ss_pred cCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCC-CCCCCCcceEEEc
Q 039262 769 LAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWK-PLPFPHLKEMKVI 836 (885)
Q Consensus 769 l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~i~ 836 (885)
+..+.+|+.+.|.+ .++.|+. .++.++.+|+.+.|.. +++.+... ...+++|+.+.+.
T Consensus 316 F~~c~~L~~i~lp~--~v~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 316 FESCTSLVSIDLPY--LVEEIGK------RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TTTCTTCCEECCCT--TCCEECT------TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred hcCCCCCCEEEeCC--cccEEhH------HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 56678888888754 3666544 3577778888887753 35555432 3346777777774
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=2.2e-08 Score=108.63 Aligned_cols=156 Identities=18% Similarity=0.125 Sum_probs=96.6
Q ss_pred ceeEEEeecCCcccCC-----C-C-CCCCCceeeeccCCcccccc-CchhhcCCCcccEEEecCCCccccC-----chhH
Q 039262 516 KVRRLSLMENQIDNLS-----G-V-PTCPYLLTLFLNNNKQLLIM-DRGFFQCMPRLKVLNLSGAKQLFYF-----PLVI 582 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~-----~-~-~~~~~Lr~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~Ls~~~~i~~l-----p~~i 582 (885)
.++.|++.+|.+.... . + ..+++|+.|+|++| .+... ...++..+++|++|+|++| .++.. ...+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 6778888887765421 1 1 23468888888888 34322 2233445677888888888 66542 2222
Q ss_pred -hccccCCEeecCCCCccc-----cchhhhccCCCcEEecCCcccccc-----ccchhhcCCCCCcEEEeecccccCCCC
Q 039262 583 -SKLVSLQHLDLSDTNVAV-----LPKELNALVNLKCLNLENAWMLTV-----IPRRLISSFSSLHVLRMFGIGYSSSDG 651 (885)
Q Consensus 583 -~~L~~L~~L~L~~~~i~~-----Lp~~l~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~ 651 (885)
...++|++|+|++|.|.. ++..+..+++|++|+|++|. +.. ++.. +...++|++|++.+|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 235778888888888744 55566778888888888884 332 2222 456678888888877654311
Q ss_pred cccccchhhhcCCCCccEEEEEecccc
Q 039262 652 IIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 652 ~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
.......+...++|+.|++++|.+.
T Consensus 228 --~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 --ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp --HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred --HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0012233455677777777777654
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.42 E-value=4.2e-08 Score=106.44 Aligned_cols=134 Identities=18% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCceeeeccCCccccccCchhhc-----CCCcccEEEecCCCcccc--CchhHhccccCCEeecCCCCccccc-----hh
Q 039262 537 PYLLTLFLNNNKQLLIMDRGFFQ-----CMPRLKVLNLSGAKQLFY--FPLVISKLVSLQHLDLSDTNVAVLP-----KE 604 (885)
Q Consensus 537 ~~Lr~L~l~~~~~l~~~~~~~~~-----~l~~Lr~L~Ls~~~~i~~--lp~~i~~L~~L~~L~L~~~~i~~Lp-----~~ 604 (885)
++|+.|++++| .+.......+. ..++|++|+|++| .++. +..-...+.+|++|+|++|.+.... ..
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 45667777766 33332221111 2256777777776 4432 1122233556677777777664332 11
Q ss_pred h-hccCCCcEEecCCcccccc-----ccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEeccc
Q 039262 605 L-NALVNLKCLNLENAWMLTV-----IPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNS 677 (885)
Q Consensus 605 l-~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 677 (885)
+ ...++|++|+|++|. ++. ++.. +..+++|++|++.+|.+.... .......+...++|+.|+++.|.+
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~g---~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDEG---LELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHHH---HHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcHH---HHHHHHHHhcCCCcCeEECCCCCC
Confidence 2 234567777777663 322 2221 345666666666665543210 000122334445555555555544
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.37 E-value=1.3e-05 Score=88.06 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=152.4
Q ss_pred CCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCEeecCCC---------------
Q 039262 533 VPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQHLDLSDT--------------- 596 (885)
Q Consensus 533 ~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~L~L~~~--------------- 596 (885)
+.+|.+|+.+.+..+ +..++...|.++.+|+.++|..+ ++.++ ..+.++.+|+.+.+..+
T Consensus 67 F~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~ 142 (394)
T 4fs7_A 67 FQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK 142 (394)
T ss_dssp TTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred hhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence 456667777766543 55666666777777777776543 33332 23455555555544332
Q ss_pred ------Cccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 597 ------NVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 597 ------~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
.+..+. ..+.++.+|+.+.+..+ +..++.+.+..+.+|+.+.+..+-.. .....+..+..|+.
T Consensus 143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~--------I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 143 EITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKI--------IRDYCFAECILLEN 212 (394)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCE--------ECTTTTTTCTTCCB
T ss_pred ccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceE--------eCchhhccccccce
Confidence 111122 23556667777776553 34566555666667766665432100 01122334444444
Q ss_pred EEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCccccc
Q 039262 670 LSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVF 749 (885)
Q Consensus 670 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~ 749 (885)
+.+..+... +.... .....++.+.+.. ..+.+....+..+..|+.+.+..+ ...+...... .+
T Consensus 213 i~~~~~~~~-i~~~~---~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~---------~~ 275 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFA---LSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFY---------NC 275 (394)
T ss_dssp CCCCTTCCE-ECTTT---TTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTT---------TC
T ss_pred eecCCCceE-eehhh---cccCCCceEEECC--CceecccccccccccceeEEcCCC--cceeeccccc---------cc
Confidence 333211110 01001 1123556665543 234444446677788888887654 2222222221 36
Q ss_pred CcccEEEeccCCCCCCCCccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCC-CCCCC
Q 039262 750 HSLRKIQIDDCNKLKDLTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWK-PLPFP 828 (885)
Q Consensus 750 ~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~-~~~~p 828 (885)
.+|+.+..... .+.. ..+..+.+|+.+.+.+ .++.|+. .++.++++|+.+.|.+ .++.+... ...+.
T Consensus 276 ~~l~~~~~~~~-~i~~-~~F~~~~~L~~i~l~~--~i~~I~~------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 276 SGLKKVIYGSV-IVPE-KTFYGCSSLTEVKLLD--SVKFIGE------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCT 343 (394)
T ss_dssp TTCCEEEECSS-EECT-TTTTTCTTCCEEEECT--TCCEECT------TTTTTCTTCCEECCCT--TCCEECTTTTTTCT
T ss_pred cccceeccCce-eecc-cccccccccccccccc--ccceech------hhhcCCCCCCEEEeCC--cccEEhHHhccCCC
Confidence 67777766542 1111 1355788999999865 4666655 4678889999999863 46666432 34578
Q ss_pred CcceEEEccCCCCCCCCCCCCccccceEEEec
Q 039262 829 HLKEMKVIHCNKLKKLPLDSNSAKERKIVIRG 860 (885)
Q Consensus 829 ~L~~L~i~~c~~L~~lp~~~~~~~~~l~~i~~ 860 (885)
+|+.+.+.. +++.++........++..+.-
T Consensus 344 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 344 SLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred CCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 888888753 377777666554444544443
No 171
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.36 E-value=1.5e-05 Score=87.47 Aligned_cols=104 Identities=16% Similarity=0.235 Sum_probs=61.5
Q ss_pred cccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEecccccc
Q 039262 710 SALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQ 787 (885)
Q Consensus 710 ~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~ 787 (885)
.++.++..|+.+.+... ...+..... ..+++|+.+.+.. .++.++ .+..+.+|+.+.|.. .++
T Consensus 259 ~aF~~c~~L~~i~lp~~--~~~I~~~aF---------~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~ 323 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS--VVSIGTGAF---------MNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GIT 323 (394)
T ss_dssp TTTTTCSSCCEEECCTT--CCEECTTTT---------TTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCC
T ss_pred ceeeecccccEEecccc--cceecCccc---------ccccccccccCCC--cccccCceeecCCCCcCEEEeCC--ccc
Confidence 35667777777777543 222222111 1467777777753 455554 356677888888754 355
Q ss_pred ccccccccccccCccCCccceeecCCcccccccCC-CCCCCCCcceEEEc
Q 039262 788 EIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYW-KPLPFPHLKEMKVI 836 (885)
Q Consensus 788 ~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~-~~~~~p~L~~L~i~ 836 (885)
.|.. .++.++.+|+.+.|-. +++.+.. ....+++|+.+.+.
T Consensus 324 ~I~~------~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 324 QILD------DAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EECT------TTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred EehH------hHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 5544 3567778888887752 3555533 23346777777765
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=2.6e-06 Score=96.70 Aligned_cols=187 Identities=13% Similarity=0.120 Sum_probs=107.4
Q ss_pred CcccchHHHHHHHHHHHcc-----------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
.+++|++..++++.+++.. ...+.+.|+|++|+||||+|+.+++.. . + .++.+.++.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~----~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-G----Y-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-T----C-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-C----C-CEEEEeCCC
Confidence 4689999999999999865 134789999999999999999999986 1 2 244455554
Q ss_pred ccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH--HhccCcEEEEEccccchhc-----ccccccCCCCCCCCCcEE
Q 039262 218 DLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR--NLKEKKFVLLLDDIWERVD-----LSKVGIPLPGRLNNKSKV 290 (885)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~-----~~~~~~~l~~~~~~gs~i 290 (885)
..... .....+....... +.........+ ...+++.+|++|+++.... +..+...+. ..+..|
T Consensus 113 ~~~~~-~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~---~~~~~i 182 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM------SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPL 182 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC------CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCE
T ss_pred cchHH-HHHHHHHHHhccc------cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH---hcCCCE
Confidence 44432 2222222211100 00000000000 1235788999999964321 122222222 123345
Q ss_pred EEecCChh---HhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHHHH
Q 039262 291 VFTTRSEE---VCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALITIG 360 (885)
Q Consensus 291 ivTtR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~~~ 360 (885)
|+++.... +.........+.+.+++.++..+.+...+.......++ +....|++.++|. +-++..+.
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 55544322 22222234578999999999999998876432222222 2467889999994 45555543
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.31 E-value=1e-06 Score=97.67 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=103.8
Q ss_pred ccc-chHH--HHHHHHHHHccCC-CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC--CEEEEEEEcCccCHHHHHHHHH
Q 039262 156 TVV-GLQS--QLERVWRCLVQEP-AGIVGLYGMGGVGKTTLMALINNKFLGSPTNF--DVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 156 ~~v-Gr~~--~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f--~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
.|+ |... ....+.......+ ...+.|+|.+|+||||||+.+++... ..+ ..+++++.. .+..++.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~---~~~~~~~v~~v~~~------~~~~~~~ 176 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV---QNEPDLRVMYITSE------KFLNDLV 176 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH---HHCCSSCEEEEEHH------HHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH---HhCCCCeEEEeeHH------HHHHHHH
Confidence 355 6433 3334444444433 67899999999999999999998762 222 134555433 2333444
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----cccccccCCCCCCCCCcEEEEecCCh--------
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----DLSKVGIPLPGRLNNKSKVVFTTRSE-------- 297 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~iivTtR~~-------- 297 (885)
..+... . ...+.+.+..++-+|++||++... ..+.+...+......|..||+||.+.
T Consensus 177 ~~~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 177 DSMKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 433211 1 112333444367799999996432 12222222210123467888888763
Q ss_pred -hHhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHH
Q 039262 298 -EVCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALI 357 (885)
Q Consensus 298 -~v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~ 357 (885)
.+...+.....+.+++++.++..+++.+.+.......++ +....|++.++|.+-.+.
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 223333334578899999999999999887422222222 246788899999886553
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=8.1e-06 Score=85.18 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=101.7
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
..++|.+..+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.. .. ..+.+..+.-..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~---~~~~v~~~~~~~- 89 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NA---TFIRVVGSELVK- 89 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC-
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CC---CEEEEehHHHHH-
Confidence 4689999999999887743 345679999999999999999999986 22 122232221110
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----------------cccccccCCCC-CC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RL 284 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 284 (885)
. ............+......++.+|+|||++... .+..+...+.. ..
T Consensus 90 -------------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 -------------K---FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp -------------C---STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred -------------h---ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 011111111222222334567899999995421 11111111100 12
Q ss_pred CCCcEEEEecCChhHhh-----hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC-chhHHH
Q 039262 285 NNKSKVVFTTRSEEVCG-----LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGG-LPLALI 357 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~ 357 (885)
..+..||.||....... .......+.+...+.++..+++...+.......+.+ ...+++.+.| .|-.+.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 34567778887553311 111234689999999999999998875443222222 4667777777 453443
No 175
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.28 E-value=4.2e-05 Score=78.99 Aligned_cols=196 Identities=17% Similarity=0.114 Sum_probs=105.7
Q ss_pred cccchHHHHHHHHH-------HHc---cCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHH
Q 039262 156 TVVGLQSQLERVWR-------CLV---QEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQ 225 (885)
Q Consensus 156 ~~vGr~~~~~~l~~-------~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 225 (885)
.++|....++++++ .+. ....+.+.|+|.+|+|||++|+.+++.. .. . .+.+..+.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~--~-~~~i~~~~-------- 99 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NF--P-FIKICSPD-------- 99 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TC--S-EEEEECGG--------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CC--C-EEEEeCHH--------
Confidence 46777776666655 332 3355689999999999999999999986 22 2 12222221
Q ss_pred HHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch-----------h-cccccccCCCC--CCCCCcEEE
Q 039262 226 EAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER-----------V-DLSKVGIPLPG--RLNNKSKVV 291 (885)
Q Consensus 226 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~-~~~~~~~~l~~--~~~~gs~ii 291 (885)
.+.... ...........+......++.+|+|||++.. . ....+...+.. ..+....||
T Consensus 100 -----~~~g~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 100 -----KMIGFS---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp -----GCTTCC---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred -----HhcCCc---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 010000 0000111122222333456889999998642 0 11112122210 122344567
Q ss_pred EecCChhHhhh---ccC-cceEEeccCCh-hhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC------chhHHHHHH
Q 039262 292 FTTRSEEVCGL---MEA-HKKFKVECLSH-NDAWELFRQKVGGETLNCHPDILELAETVAKECGG------LPLALITIG 360 (885)
Q Consensus 292 vTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G------lPLai~~~~ 360 (885)
.||........ ... ...+.+++++. ++...++.+.. . .+ .+....+++.+.| .+-++..+-
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~----~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N----FK---DKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C----SC---HHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C----CC---HHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 77877654322 111 45678899988 66666665532 1 11 3457788888888 444444444
Q ss_pred HHhcCCCChHHHHHHHHHHhcc
Q 039262 361 RAMSCKRMPEEWSYAIQVLRTS 382 (885)
Q Consensus 361 ~~l~~~~~~~~w~~~~~~l~~~ 382 (885)
.... ......+..+++.+...
T Consensus 244 ~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 244 MSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHhh-hchHHHHHHHHHHHHHc
Confidence 3332 23456677777666554
No 176
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.28 E-value=1.3e-05 Score=88.42 Aligned_cols=174 Identities=17% Similarity=0.146 Sum_probs=104.1
Q ss_pred CcccchHHHH---HHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHH
Q 039262 155 ATVVGLQSQL---ERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 230 (885)
..++|.+..+ ..+...+..+....+.|+|.+|+||||+|+.+++.. ... ++.++... .... .+.+..
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~-ir~~~~ 96 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKE-IREAIE 96 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHH-HHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHH-HHHHHH
Confidence 4689999888 778888888778899999999999999999999986 222 23332211 1111 111111
Q ss_pred HcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEE-EecCChhH---hhhcc
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVV-FTTRSEEV---CGLME 304 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~ii-vTtR~~~v---~~~~~ 304 (885)
.. ......+++.+|++|++... ...+.+...+. . + ...+| .||.+... .....
T Consensus 97 ~a------------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 97 RA------------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-D-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HH------------------HHHHHTTCCEEEEEETTTCC------CCHHHHH-T-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred HH------------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-c-C-ceEEEecCCCCcccccCHHHhC
Confidence 10 00112457889999999643 23344433333 1 2 22333 35555431 11222
Q ss_pred CcceEEeccCChhhHHHHHHHHhcCCcc----CCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 305 AHKKFKVECLSHNDAWELFRQKVGGETL----NCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 305 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
....+.+.+++.++...++.+.+..... ....--.+....+++.++|.+-.+..
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 3457899999999999999988743110 00011245678888899998876543
No 177
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=2e-06 Score=93.03 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=109.7
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC-CCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS-PTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|+++.++.+..++.....+.+.|+|++|+||||+|+.+++..... ...+ .++.+..+.......+ ++....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 4589999999999999987655559999999999999999998874100 0111 1333333332222222 11111110
Q ss_pred -CCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hhhh-ccCcce
Q 039262 234 -LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VCGL-MEAHKK 308 (885)
Q Consensus 234 -~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 308 (885)
.... .... . .....-.+++-++++|++... .....+...+. ......++|++|.... +... ......
T Consensus 115 ~~~~~--~~~~--~---~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVS--KPSK--H---DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCC--CCCT--T---HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhccc--ccch--h---hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCce
Confidence 0000 0000 0 000111235569999998642 22233333332 2234567777765442 2111 112347
Q ss_pred EEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 309 FKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 309 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
+.+.+++.++....+.+.+.......+ .+..+.|++.++|.|..+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999999987754332222 456789999999999865443
No 178
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=4.7e-06 Score=88.19 Aligned_cols=154 Identities=13% Similarity=0.156 Sum_probs=86.0
Q ss_pred cccchHHHHHHHHHHHc---------------cCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 156 TVVGLQSQLERVWRCLV---------------QEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
.++|.+..++.|.+.+. ......+.|+|.+|+|||++|+.+++... ........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLH-RLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHH-HTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCcCCCcEEEEcHH--
Confidence 47999988888876653 23445799999999999999998888762 1111111112333211
Q ss_pred HHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch-----------hcccccccCCCCCCCCCcE
Q 039262 221 LENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER-----------VDLSKVGIPLPGRLNNKSK 289 (885)
Q Consensus 221 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 289 (885)
.+... ............+.. .+.-+|++|+++.. .....+...+. ....+..
T Consensus 109 ----------~l~~~---~~g~~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVGQ---YIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLV 171 (309)
T ss_dssp ----------GTCCS---STTCHHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCE
T ss_pred ----------Hhhhh---cccccHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEE
Confidence 11000 001111111111111 13459999999732 22233333332 2344567
Q ss_pred EEEecCChhHhhh-------c-cCcceEEeccCChhhHHHHHHHHhcC
Q 039262 290 VVFTTRSEEVCGL-------M-EAHKKFKVECLSHNDAWELFRQKVGG 329 (885)
Q Consensus 290 iivTtR~~~v~~~-------~-~~~~~~~l~~L~~~e~~~Lf~~~~~~ 329 (885)
||.||........ . .....+.+++++.++...++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 7888765432110 0 11267899999999999999887743
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=2.6e-06 Score=92.16 Aligned_cols=195 Identities=9% Similarity=0.104 Sum_probs=103.7
Q ss_pred CcccchHHHHHHHHHHH-ccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC-CC--CCCE--------------------E
Q 039262 155 ATVVGLQSQLERVWRCL-VQEPAGIVGLYGMGGVGKTTLMALINNKFLGS-PT--NFDV--------------------V 210 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~--~f~~--------------------~ 210 (885)
.+++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++..... .+ .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 46899999999999988 65554449999999999999999998853111 11 1111 0
Q ss_pred EEEEEcCcc-CHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCC
Q 039262 211 IWVVVSKDL-RLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNK 287 (885)
Q Consensus 211 ~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~g 287 (885)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++... .....+...+. ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCC
Confidence 111111100 000012222222211000 00000 00 002346779999998642 22223333232 12346
Q ss_pred cEEEEecCChh-Hhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHHH
Q 039262 288 SKVVFTTRSEE-VCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITIG 360 (885)
Q Consensus 288 s~iivTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~~ 360 (885)
..+|++|.+.. +.. .......+++.+++.++..+.+.+.+.......+. .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 77777776532 211 11234678999999999999999877432211120 2346888999999987654433
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.17 E-value=2.4e-05 Score=83.85 Aligned_cols=171 Identities=15% Similarity=0.133 Sum_probs=99.2
Q ss_pred CcccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
..++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+..+.......+ ...+
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~-~~~~ 101 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL-AAIL 101 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH-HHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH-HHHH
Confidence 4689999999999888863 345678999999999999999998886 2222 22332221111111 1111
Q ss_pred HHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--cccccccCCCC-----------------CCCCCcEE
Q 039262 230 EKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--DLSKVGIPLPG-----------------RLNNKSKV 290 (885)
Q Consensus 230 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--~~~~~~~~l~~-----------------~~~~gs~i 290 (885)
.. ..+..+|+||++.... ....+...+.. ...++..+
T Consensus 102 ~~------------------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 102 TN------------------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HT------------------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred Hh------------------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11 1345677888875421 11111110000 01113556
Q ss_pred EEecCChhH-hhh-cc-CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 291 VFTTRSEEV-CGL-ME-AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 291 ivTtR~~~v-~~~-~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
|.||..... ... .. ....+.+.+++.++...++.+.+.......+ .+....+++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCE---EKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEEC---HHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHCcCHHHHHHH
Confidence 666654322 111 11 2357899999999999999987743321112 455788888999999655433
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.13 E-value=3.9e-05 Score=83.30 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=101.3
Q ss_pred CcccchHHHHHH---HHHHHccCCC--cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEc----CccCHHHHH
Q 039262 155 ATVVGLQSQLER---VWRCLVQEPA--GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVS----KDLRLENIQ 225 (885)
Q Consensus 155 ~~~vGr~~~~~~---l~~~L~~~~~--~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s----~~~~~~~~~ 225 (885)
+.++|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.. . .... .+.+... .........
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHH
Confidence 468999988766 4555555433 589999999999999999999997 2 2111 1222211 122333333
Q ss_pred HHHHHHcC-CC--------------------C-------ccccccchhHHHHHHHHHh-----ccC----cEEEEEcccc
Q 039262 226 EAIGEKIG-LV--------------------N-------DTWKNRRTEQKALDIFRNL-----KEK----KFVLLLDDIW 268 (885)
Q Consensus 226 ~~i~~~l~-~~--------------------~-------~~~~~~~~~~~~~~l~~~l-----~~k----~~LlVlDdv~ 268 (885)
........ .. . ..............+.... .++ +.+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 33333210 00 0 0000000112222221111 133 3599999996
Q ss_pred ch--hcccccccCCCCCCCCCcEEEEecCC-h------------hH-hhhccCcceEEeccCChhhHHHHHHHHhcCCcc
Q 039262 269 ER--VDLSKVGIPLPGRLNNKSKVVFTTRS-E------------EV-CGLMEAHKKFKVECLSHNDAWELFRQKVGGETL 332 (885)
Q Consensus 269 ~~--~~~~~~~~~l~~~~~~gs~iivTtR~-~------------~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 332 (885)
.. .....+...+. ..... .++++|.. . .+ .........+.+.+++.++..+++...+.....
T Consensus 200 ~l~~~~~~~L~~~le-~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALE-SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GSBHHHHHHHHHHTT-CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ccChHHHHHHHHHhh-CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 43 22333333332 22222 34444421 0 01 011122245799999999999999987743322
Q ss_pred CCCchhHHHHHHHHHHhC-CchhHHHH
Q 039262 333 NCHPDILELAETVAKECG-GLPLALIT 358 (885)
Q Consensus 333 ~~~~~l~~~~~~i~~~c~-GlPLai~~ 358 (885)
..+ .+....|++.+. |.|-.+..
T Consensus 278 ~~~---~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EMS---EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CBC---HHHHHHHHHHHHHSCHHHHHH
T ss_pred CCC---HHHHHHHHHHhcCCCHHHHHH
Confidence 222 345788888887 77765543
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.10 E-value=7.8e-05 Score=76.49 Aligned_cols=179 Identities=13% Similarity=0.150 Sum_probs=98.1
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.+.+.+. . ...+.|.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 468999988877766542 1 234568899999999999999999987 222 23333332111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------------c----ccccccCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------------D----LSKVGIPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~----~~~~~~~l~~-~~ 284 (885)
.. ...........+.......+.+|++||++... . +..+...+.. ..
T Consensus 78 --------~~-------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 --------VI-------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp --------SS-------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred --------hc-------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 00 11111112222223333467899999996430 0 1111111110 11
Q ss_pred CCCcEEEEecCChhHh-hhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHH
Q 039262 285 NNKSKVVFTTRSEEVC-GLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALIT 358 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~ 358 (885)
..+..||.||...... ... .....+.+...+.++-.+++...+...... .........+++.+.|.+- .|..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHH
Confidence 2355667777654321 111 123567889999999999998877433211 1222235778888888754 4433
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.09 E-value=6.9e-05 Score=80.64 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=102.5
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..+++|.+.+.. ...+.|.|+|.+|+|||++|+.+++.. .. ..+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 3689999999999887742 345789999999999999999999886 21 233444432111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchh-------------cccccccCCC---CCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERV-------------DLSKVGIPLP---GRLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~---~~~~ 285 (885)
. ... ........+.. .-..++.+|+||+++... ....+...+. ....
T Consensus 156 -----------~----~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 -----------K----WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp -----------S----STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred -----------c----ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 000 11111222222 223567899999995321 0111111111 0112
Q ss_pred CCcEEEEecCChh-Hhhhc--cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC-chhHHHHHH
Q 039262 286 NKSKVVFTTRSEE-VCGLM--EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGG-LPLALITIG 360 (885)
Q Consensus 286 ~gs~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~~~~ 360 (885)
.+..||.||.... +...+ .....+.+...+.++..+++...+.......+ .+....|++.+.| .+-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 3455666775532 21111 12346788889999999999887743321112 3457888999998 455565554
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.09 E-value=5.2e-05 Score=80.76 Aligned_cols=170 Identities=13% Similarity=0.103 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHccCC-CcEEEEEcCCCCcHHHHHHHHHHhhcCCC-------------------CCCCEEEEEEEc---C
Q 039262 161 QSQLERVWRCLVQEP-AGIVGLYGMGGVGKTTLMALINNKFLGSP-------------------TNFDVVIWVVVS---K 217 (885)
Q Consensus 161 ~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~s---~ 217 (885)
++..+.+...+..++ .+.+.++|+.|+||||+|+.+++...... .+++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 556677777777665 45799999999999999999998762111 1122 2222221 1
Q ss_pred ccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecC
Q 039262 218 DLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTR 295 (885)
Q Consensus 218 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR 295 (885)
...+.. .+++.+.+.... ..+++-++|+|+++.. .....+...+. ....++.+|++|.
T Consensus 87 ~~~i~~-ir~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~t~ 146 (334)
T 1a5t_A 87 TLGVDA-VREVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLATR 146 (334)
T ss_dssp SBCHHH-HHHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEEES
T ss_pred CCCHHH-HHHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEEeC
Confidence 111111 122222221100 1246779999999653 22333444443 3345677777776
Q ss_pred Chh-Hhh-hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHHH
Q 039262 296 SEE-VCG-LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALITI 359 (885)
Q Consensus 296 ~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~~ 359 (885)
+.+ +.. .......+.+.+++.++..+.+.+... .+ .+.+..+++.++|.|..+..+
T Consensus 147 ~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 147 EPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT-----MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred ChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 643 222 222345789999999999999988761 11 334678999999999766443
No 185
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.00018 Score=76.07 Aligned_cols=180 Identities=16% Similarity=0.200 Sum_probs=102.1
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.|.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4689999998888876631 234689999999999999999999986 1 11 223333332110
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchhc-------------ccccccCCCC--CCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERVD-------------LSKVGIPLPG--RLNN 286 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 286 (885)
. +.... ......+.+ .-..++.+|+||+++.... ...+...+.. ....
T Consensus 85 -----------~----~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 -----------K----WLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp -----------S----SCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred -----------h----hhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 0 01111 222222222 2235788999999964310 0111111110 1234
Q ss_pred CcEEEEecCChhHh-hhc--cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHHHH
Q 039262 287 KSKVVFTTRSEEVC-GLM--EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALITIG 360 (885)
Q Consensus 287 gs~iivTtR~~~v~-~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~~~ 360 (885)
+..||.||...... ..+ .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55566666544221 100 22356788889999999999888754331111 34568889999887 44454444
No 186
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.5e-06 Score=81.76 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=47.0
Q ss_pred cccEEEeccCCCCCC--CCccCCCCCcceEeEeccccccccccccccccccCcc----CCccceeecCCcccccccCCC-
Q 039262 751 SLRKIQIDDCNKLKD--LTFLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNL----FAKLQYLGLSSLSNFQSIYWK- 823 (885)
Q Consensus 751 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~----~p~L~~L~L~~~~~l~~i~~~- 823 (885)
+|++|++++|. +++ +..+..+++|++|+|++|..+++-.- ..+.. .++|+.|+|++|+++++-...
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------ERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------HHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------HHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 46666666664 433 23355666666666666665555211 12222 245666777666665542211
Q ss_pred CCCCCCcceEEEccCCCCCC
Q 039262 824 PLPFPHLKEMKVIHCNKLKK 843 (885)
Q Consensus 824 ~~~~p~L~~L~i~~c~~L~~ 843 (885)
...+|+|++|++++||+++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 12367777777777766653
No 187
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=0.00022 Score=77.99 Aligned_cols=259 Identities=13% Similarity=0.164 Sum_probs=146.1
Q ss_pred ceeEEEeecCCcccCC--CCCCCCCceeeeccCC--ccccccCchhhcCCCcccEEEecCCCccccCc-hhHhccccCCE
Q 039262 516 KVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNN--KQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFP-LVISKLVSLQH 590 (885)
Q Consensus 516 ~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~--~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp-~~i~~L~~L~~ 590 (885)
.++.+.+.. .+..+. .+.+|++|+.+.+..+ ..+..++...|.++..|+.+.+..+ +..++ ..+..+.+|+.
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 366666653 244443 3577888888887665 2466677777777777777766554 34443 34566777777
Q ss_pred eecCCCCccccc-hhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccE
Q 039262 591 LDLSDTNVAVLP-KELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEV 669 (885)
Q Consensus 591 L~L~~~~i~~Lp-~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 669 (885)
+.+..+ +..++ ..+..+.+|+.+.+..+ +..+....+. ..+|+.+.+...-..- ....+..+.++..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~~i--------~~~af~~c~~l~~ 209 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVTRI--------GTNAFSECFALST 209 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCCEE--------CTTTTTTCTTCCE
T ss_pred ccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccccc--------ccchhhhccccce
Confidence 777543 34444 34566677777776553 4455544333 2456655554321100 0011111222221
Q ss_pred EEEEecc------------------------------------cchhhhhhccccccccceeeEecCCCCCCcccccccc
Q 039262 670 LSLTLNN------------------------------------SRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALA 713 (885)
Q Consensus 670 L~l~~~~------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 713 (885)
....... ...+.... ...+..|+.+.+.. ....+....+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~a--F~~c~~L~~i~lp~--~~~~I~~~aF~ 285 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHA--FDSCAYLASVKMPD--SVVSIGTGAFM 285 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTT--TTTCSSCCEEECCT--TCCEECTTTTT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCcceEcccce--eeecccccEEeccc--ccceecCcccc
Confidence 1111000 00000000 01124455555542 23344445778
Q ss_pred cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEecccccccccc
Q 039262 714 DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVS 791 (885)
Q Consensus 714 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~ 791 (885)
++++|+.+.+.. .+..++..... .+.+|+++.|.. +++.+. .+..+.+|+.+.|.. .++.|..
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~---------~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~ 350 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFA---------GCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPE 350 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTT---------TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCG
T ss_pred cccccccccCCC--cccccCceeec---------CCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhH
Confidence 889999999864 35544333332 478999999975 466664 467889999999964 4667655
Q ss_pred ccccccccCccCCccceeecCCc
Q 039262 792 DVPEVMRNLNLFAKLQYLGLSSL 814 (885)
Q Consensus 792 ~~~~~~~~~~~~p~L~~L~L~~~ 814 (885)
.++.++++|+.+.+.+.
T Consensus 351 ------~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 351 ------SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp ------GGGTTCTTCCEEEESSC
T ss_pred ------hHhhCCCCCCEEEECCc
Confidence 46888999999999863
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=0.0001 Score=78.17 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=102.9
Q ss_pred CcccchHHHHHHHHHHHc----------c--CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV----------Q--EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~----------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.|.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 368999999999988772 1 134579999999999999999999986 222 2223221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchhc-------------ccccccCCCC--CCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERVD-------------LSKVGIPLPG--RLNN 286 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 286 (885)
. +.... .. ........+.+ .-..++.+|+||+++.... ...+...+.. ....
T Consensus 86 ~----l~~~~-------~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 D----LVSKW-------MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp H----HHTTT-------GG-GHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred H----Hhhcc-------cc-hHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1 11110 01 11222222222 2234678999999964211 1111111110 1234
Q ss_pred CcEEEEecCChhHhh-hc--cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHHHH
Q 039262 287 KSKVVFTTRSEEVCG-LM--EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALITIG 360 (885)
Q Consensus 287 gs~iivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~~~ 360 (885)
+..||.||....... .+ .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 566666776543211 00 22356788889999999999998864432112 33467888888874 54554444
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.01 E-value=3.5e-05 Score=81.95 Aligned_cols=167 Identities=15% Similarity=0.149 Sum_probs=93.2
Q ss_pred HHHHHHHHHccC--CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcccc
Q 039262 163 QLERVWRCLVQE--PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWK 240 (885)
Q Consensus 163 ~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 240 (885)
....+...+... ....+.|+|++|+||||||+.+++.... ..+ .++++++. .+...+...+..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~--~~~-~~~~i~~~------~~~~~~~~~~~~------ 86 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKK--RGY-RVIYSSAD------DFAQAMVEHLKK------ 86 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHH--TTC-CEEEEEHH------HHHHHHHHHHHH------
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHH--CCC-EEEEEEHH------HHHHHHHHHHHc------
Confidence 344445544443 3467999999999999999999997621 122 24455432 233333333210
Q ss_pred ccchhHHHHHHHHHhccCcEEEEEccccchh----cccccccCCCCCCCCCcEEEEecCCh---------hHhhhccCcc
Q 039262 241 NRRTEQKALDIFRNLKEKKFVLLLDDIWERV----DLSKVGIPLPGRLNNKSKVVFTTRSE---------EVCGLMEAHK 307 (885)
Q Consensus 241 ~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~iivTtR~~---------~v~~~~~~~~ 307 (885)
.. ...+...+ .++-+|++||+.... ..+.+...+......|..||+||.+. .+...+....
T Consensus 87 -~~----~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 87 -GT----INEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp -TC----HHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred -Cc----HHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 01 11122222 236799999996432 11222222210112456788877643 1222223335
Q ss_pred eEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 308 KFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 308 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
.+.+++ +.++..+++...+.......+ .+....|++.+ |.+-.
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 789999 999999999988743322222 34577888888 76653
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=0.00015 Score=76.01 Aligned_cols=177 Identities=15% Similarity=0.152 Sum_probs=100.2
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999999887632 235689999999999999999999886 21 123333322110
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHH-HHhccCcEEEEEccccchhc-------------ccccc---cCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIF-RNLKEKKFVLLLDDIWERVD-------------LSKVG---IPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~-------------~~~~~---~~l~~-~~ 284 (885)
. ... ........+. .....++.+|++|++..... ...+. ..++. ..
T Consensus 93 -----------~----~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 -----------K----YVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----------S----SCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----------c----ccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 001 1122222222 22335678999999954311 00011 11110 11
Q ss_pred CCCcEEEEecCChh-----HhhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHH
Q 039262 285 NNKSKVVFTTRSEE-----VCGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALIT 358 (885)
Q Consensus 285 ~~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~ 358 (885)
+.+..||.||.... +... ....+.+...+.++...++...+.......+ .+....+++.+.|.+- ++..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~ 231 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTA 231 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHH
Confidence 23456666776543 1221 2346777778888888888877643221111 3456788999999875 4544
Q ss_pred HH
Q 039262 359 IG 360 (885)
Q Consensus 359 ~~ 360 (885)
+.
T Consensus 232 l~ 233 (297)
T 3b9p_A 232 LA 233 (297)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=3.6e-05 Score=82.46 Aligned_cols=176 Identities=13% Similarity=0.181 Sum_probs=102.1
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC-EEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD-VVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
..++|.+..++.|...+..++.+.+.++|+.|+||||+|+.+++... ...+. .+.-+..+.......+. +++.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~~ir-~~i~--- 98 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDVVR-NQIK--- 98 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH--TTSHHHHEEEECTTSCCSHHHHH-THHH---
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc--CCCccceEEEEcCcccccHHHHH-HHHH---
Confidence 35789999999999888877655599999999999999999998862 11111 11222222211111111 1111
Q ss_pred CCCccccccchhHHHHHHHHH---hccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCChh-Hhh-hccCc
Q 039262 234 LVNDTWKNRRTEQKALDIFRN---LKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSEE-VCG-LMEAH 306 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~---l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~~-v~~-~~~~~ 306 (885)
.+.+. +.+.+-++|+|++... .....+...+. .....+++|++|.... +.. .....
T Consensus 99 ----------------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 99 ----------------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp ----------------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred ----------------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhc
Confidence 11100 1234678999998542 22223322222 2234566777665432 211 11223
Q ss_pred ceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 307 KKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 307 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
..+.+.+++.++..+.+.+.+.......+ .+..+.+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 47899999999999988877633221222 345788889999988643
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.98 E-value=0.00013 Score=76.35 Aligned_cols=174 Identities=14% Similarity=0.172 Sum_probs=99.4
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.+++|.+..+++|.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. .. +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~--i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NF--ISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EE--EEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CE--EEEE----h
Confidence 3589999988888877642 345689999999999999999999986 21 12 2222 2
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----------------ccccccCCCC-CC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----------------LSKVGIPLPG-RL 284 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~ 284 (885)
..+.... .+. ........+.......+.++++|+++.... ...+...+.. ..
T Consensus 83 ~~l~~~~---~g~--------~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGE--------SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTT--------CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCc--------hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 2222221 111 111122223333345689999999964210 1111111110 12
Q ss_pred CCCcEEEEecCChhHh-hh-c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhH
Q 039262 285 NNKSKVVFTTRSEEVC-GL-M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLA 355 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLa 355 (885)
..+..||.||...... .. . .-...+.+...+.++-.+++...+.......+.+ ...+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 3456677777655321 11 1 1235688999999999999988775433222223 24566677777644
No 193
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.96 E-value=9.7e-05 Score=79.28 Aligned_cols=177 Identities=16% Similarity=0.172 Sum_probs=100.8
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.|.+.+.. ...+-|.|+|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 3689999999998887631 123468899999999999999999987 221 2223221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchhc-------------ccccccCCCC--CCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERVD-------------LSKVGIPLPG--RLNN 286 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 286 (885)
. +.... .... ......+.. .-..++.+|+||+++.... ...+...+.. ....
T Consensus 119 ~----l~~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 D----LVSKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp H----HHSCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred H----Hhhhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 1 11111 0111 122222222 2235788999999964310 1111111100 1134
Q ss_pred CcEEEEecCChhH-----hhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHHHH
Q 039262 287 KSKVVFTTRSEEV-----CGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALITIG 360 (885)
Q Consensus 287 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~~~ 360 (885)
+..||.||..... .. .....+.+...+.++-.+++...+.......+ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566667765421 22 23356788899999999999988754431111 33467888999884 44454443
No 194
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.96 E-value=4.1e-05 Score=81.41 Aligned_cols=174 Identities=10% Similarity=0.064 Sum_probs=99.7
Q ss_pred CcccchHHHHHHHHHHHccCCC-cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcC
Q 039262 155 ATVVGLQSQLERVWRCLVQEPA-GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIG 233 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 233 (885)
.+++|.+..++.+.+++..+.. .++.+.|++|+|||++|+.+++.. . ...+.+..+.. ... ..+..+....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l---~---~~~~~i~~~~~-~~~-~i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV---N---ADMMFVNGSDC-KID-FVRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT---T---EEEEEEETTTC-CHH-HHHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh---C---CCEEEEccccc-CHH-HHHHHHHHHH
Confidence 4689999999999999987544 577888889999999999999886 1 12344443331 121 1121111110
Q ss_pred CCCccccccchhHHHHHHHHHhccCcEEEEEccccchh---cccccccCCCCCCCCCcEEEEecCChhH-hh-hccCcce
Q 039262 234 LVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV---DLSKVGIPLPGRLNNKSKVVFTTRSEEV-CG-LMEAHKK 308 (885)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---~~~~~~~~l~~~~~~gs~iivTtR~~~v-~~-~~~~~~~ 308 (885)
... ...+++-++++||+.... ....+...+. ....+.++|+||....- .. .......
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 000 012367899999996532 2333333222 22245678888766431 11 1112346
Q ss_pred EEeccCChhhHHHHHH-------HHhcCCccCCCchhHHHHHHHHHHhCCchhHH
Q 039262 309 FKVECLSHNDAWELFR-------QKVGGETLNCHPDILELAETVAKECGGLPLAL 356 (885)
Q Consensus 309 ~~l~~L~~~e~~~Lf~-------~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai 356 (885)
+.+.+++.++-.+++. ..+.......++ .+....+++.++|.+-.+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHH
Confidence 8999999888443332 222211111111 256788889998877644
No 195
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.96 E-value=5.2e-06 Score=89.11 Aligned_cols=62 Identities=21% Similarity=0.214 Sum_probs=31.6
Q ss_pred cCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEeccCCCCCCC-----C-ccCCCCCcceEeEecc
Q 039262 714 DLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDDCNKLKDL-----T-FLAFAPNLKSIEVNSC 783 (885)
Q Consensus 714 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~~ 783 (885)
.+++|+.|++.+|.........+.. ...+++|++|+|+. +.+.+. + .+..+++|+.|+|++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~-------a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLE-------SDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHH-------CSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHh-------CccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 3567777777666432211000110 01366777777765 344431 1 2245677777777665
No 196
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=3.4e-06 Score=85.73 Aligned_cols=83 Identities=24% Similarity=0.315 Sum_probs=61.3
Q ss_pred hcCCCcccEEEecCCCccccC---chhHhccccCCEeecCCCCccccchhhhccC--CCcEEecCCccccccccc-----
Q 039262 558 FQCMPRLKVLNLSGAKQLFYF---PLVISKLVSLQHLDLSDTNVAVLPKELNALV--NLKCLNLENAWMLTVIPR----- 627 (885)
Q Consensus 558 ~~~l~~Lr~L~Ls~~~~i~~l---p~~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~--~L~~L~l~~~~~l~~lp~----- 627 (885)
..++++|+.|+|++| .+..+ |..++.+++|++|+|++|.|..+. .+..+. +|++|+|++|+....+|.
T Consensus 166 ~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 356889999999999 66654 466778999999999999988773 355555 899999999865544542
Q ss_pred -hhhcCCCCCcEEEee
Q 039262 628 -RLISSFSSLHVLRMF 642 (885)
Q Consensus 628 -~~i~~l~~L~~L~l~ 642 (885)
.++..+++|+.|+-.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 245677888877543
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.95 E-value=0.00026 Score=78.38 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=101.3
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.|.+.+.. ...+.|.|+|++|+|||+||+.+++.. . . .-++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~--~----~~~~~v~~~~--- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N--N----STFFSISSSD--- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C--S----SEEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C--C----CCEEEEeHHH---
Confidence 4689999999999887631 244689999999999999999999986 1 1 1233333221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchh-------------cccccccCCCC--CCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERV-------------DLSKVGIPLPG--RLNN 286 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~--~~~~ 286 (885)
+. ..... .... ....+.. .-..++.+|+||+++... ....+...+.. ....
T Consensus 204 -l~----~~~~g-------~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 204 -LV----SKWLG-------ESEK-LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp --------------------CCC-THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -HH----hhhcc-------hHHH-HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 11 11100 0011 1122222 223567899999996431 01112222210 1234
Q ss_pred CcEEEEecCChhHhh-h-c-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHHHH
Q 039262 287 KSKVVFTTRSEEVCG-L-M-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALITIG 360 (885)
Q Consensus 287 gs~iivTtR~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~~~ 360 (885)
+..||.||....... . . .....+.+...+.++-..+|...+.......+ ......|++.+.|. +-.|..+.
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 566776776543211 0 1 12346788888889999999888754331111 34567888999984 44554443
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.2e-06 Score=79.43 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=37.1
Q ss_pred cCcccEEEeccCCCCCCC--CccCCC----CCcceEeEeccccccccccccccccccCccCCccceeecCCcccccc
Q 039262 749 FHSLRKIQIDDCNKLKDL--TFLAFA----PNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQS 819 (885)
Q Consensus 749 ~~~L~~L~L~~c~~l~~l--~~l~~l----~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~ 819 (885)
+++|++|+|++|..+++- ..+..+ ++|++|+|++|..+++-.- ..+..+|+|+.|++++|+.++.
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl------~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI------IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH------HHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH------HHHhcCCCCCEEECCCCCCCCc
Confidence 566666666666655542 223332 3566666666666655321 2344566677777776666654
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.94 E-value=2.6e-05 Score=75.25 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=41.8
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++||+.+++.+.+.+.....+.+.|+|.+|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999988777788999999999999999999886
No 200
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.92 E-value=0.00038 Score=75.83 Aligned_cols=179 Identities=12% Similarity=0.111 Sum_probs=99.4
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.|.+.+.. ...+-|.|+|.+|+|||++|+.+++.. .. ..+.+.++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999888731 234689999999999999999998886 21 223333322111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchh-------------cccccccCC---CCCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERV-------------DLSKVGIPL---PGRLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l---~~~~~ 285 (885)
. . .... ......+.. .-...+.+|+||+++... ....+...+ .....
T Consensus 187 ~--------~-------~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K--------Y-------VGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c--------c-------cchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 0 0011 111222222 223456799999995430 001111111 10112
Q ss_pred CCcEEEEecCChhHh-hh-c-cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh-HHHHHH
Q 039262 286 NKSKVVFTTRSEEVC-GL-M-EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL-ALITIG 360 (885)
Q Consensus 286 ~gs~iivTtR~~~v~-~~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL-ai~~~~ 360 (885)
....||.||...... .. . .....+.+...+.++..+++...+........ .+....+++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~---~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLT---QKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 344566666543221 11 1 12246788999999999999888754332222 3456789999988654 554443
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=7.5e-05 Score=77.93 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=91.0
Q ss_pred chHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCC-CCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCC
Q 039262 159 GLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSP-TNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVN 236 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 236 (885)
|-++.++.|...+..++.+...++|+.|+||||+|+.+.+...... .+.+. .++..+. ...+..+ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 3455677788888776777999999999999999999987631111 23443 4554432 2333222 33444443211
Q ss_pred ccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh-hHhhhccCcceEEecc
Q 039262 237 DTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE-EVCGLMEAHKKFKVEC 313 (885)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~ 313 (885)
..+++-++|+|+++.. ...+.+...+. .....+.+|++|.+. .+...+... .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245678999999643 33444444443 334567777766544 343333444 899999
Q ss_pred CChhhHHHHHHHHh
Q 039262 314 LSHNDAWELFRQKV 327 (885)
Q Consensus 314 L~~~e~~~Lf~~~~ 327 (885)
+++++..+.+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998876
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0004 Score=74.13 Aligned_cols=171 Identities=18% Similarity=0.203 Sum_probs=99.2
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
+++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCK---FIRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCE---EEEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCC---ceEEEhHHhhc-
Confidence 3578999998888776531 245678999999999999999999997 222 23333332111
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchh----------c------ccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERV----------D------LSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 283 (885)
.+.+.+ +.....+.. .-...+++|++|+++... + ...+...+.+ .
T Consensus 221 ----------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 001111 122222222 224578999999986420 0 1111111110 2
Q ss_pred CCCCcEEEEecCChhHh-----hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 284 LNNKSKVVFTTRSEEVC-----GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
...+..||.||...+.. +...-...+.++.-+.++-.++|+.+........+-+ ...+++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 23455566677654431 1112356788988899999999988775543222333 466778888754
No 203
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.77 E-value=0.00019 Score=80.07 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=82.2
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCC-C-EEEEEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNF-D-VVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~-~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
+.++||+.+++.+++.+......-+.|+|.+|+|||++|+.+++..... .... + .++.+.++ .
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------T 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------c
Confidence 3589999999999999987666678899999999999999999886210 0111 1 12222222 0
Q ss_pred HcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHh-------hhc
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC-------GLM 303 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~-------~~~ 303 (885)
.. .+.........+...-..++.++++|. .......+...+. ....++|.||...... ...
T Consensus 247 ~~-------~g~~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 247 KY-------RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred cc-------cchHHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 00 000011111222222235678999991 2222222333332 2235566655544311 111
Q ss_pred cCcceEEeccCChhhHHHHHHHHhc
Q 039262 304 EAHKKFKVECLSHNDAWELFRQKVG 328 (885)
Q Consensus 304 ~~~~~~~l~~L~~~e~~~Lf~~~~~ 328 (885)
.....+.+++.+.++..+++...+.
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 1234689999999999999997664
No 204
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=2.2e-05 Score=75.76 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=44.4
Q ss_pred CCCCCceeeeccCCcccc-----ccCchhhcCCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCCCccc---
Q 039262 534 PTCPYLLTLFLNNNKQLL-----IMDRGFFQCMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDTNVAV--- 600 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~-----~~~~~~~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~~--- 600 (885)
...++|++|+|++|..+. .+. ..+...++|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~-~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACA-EALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHH-HHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHH-HHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 345566666666652121 111 12445566666666666 4432 33444445566666666666543
Q ss_pred --cchhhhccCCCcEEec--CCc
Q 039262 601 --LPKELNALVNLKCLNL--ENA 619 (885)
Q Consensus 601 --Lp~~l~~L~~L~~L~l--~~~ 619 (885)
+...+...++|++|++ ++|
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHHHHHHhCCCceEEEecCCCC
Confidence 3444555556666666 444
No 205
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.00097 Score=72.44 Aligned_cols=285 Identities=11% Similarity=0.118 Sum_probs=127.8
Q ss_pred cceeEEEeecCCcccCC--CCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCchhHhccccCCEee
Q 039262 515 EKVRRLSLMENQIDNLS--GVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPLVISKLVSLQHLD 592 (885)
Q Consensus 515 ~~lr~L~l~~~~~~~l~--~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~~L~~L~ 592 (885)
++++.+.+.. .+..++ .+.+|.+|+.+.+..+ +..++...|.++ .|..+.+..+ +..++.......+|+.+.
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L~~i~ 119 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDLDDFE 119 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCCSEEE
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccceeccCCccccc
Confidence 3566665543 333333 2567777777777543 566666667666 4555555433 444443332334677777
Q ss_pred cCCCCccccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCC-Cc----ccccchhhhcCCCCc
Q 039262 593 LSDTNVAVLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSD-GI----IREGELEELLGLKYL 667 (885)
Q Consensus 593 L~~~~i~~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~-~~----~~~~~~~~l~~L~~L 667 (885)
+..+ +..+....-.-.+|+.+.+..+ +..+....+..+.+++...+......... .. ........+.....+
T Consensus 120 lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCc-cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 7553 3334332222234555555433 34444444556666666655432211000 00 000000011111222
Q ss_pred cEEEEEecccchhhhhhccccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCccc
Q 039262 668 EVLSLTLNNSRALHCVLSSHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPF 747 (885)
Q Consensus 668 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 747 (885)
..+.+..... ...... ......++.+.+.. .+..+....+..+..|+.+.+..+ +..+......
T Consensus 197 ~~~~~~~~~~-~i~~~~--f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~--------- 260 (379)
T 4h09_A 197 TEFTIPSTVK-TVTAYG--FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQ--------- 260 (379)
T ss_dssp SEEECCTTCC-EECTTT--TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTT---------
T ss_pred ccccccccee-EEeecc--cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccc---------
Confidence 2221110000 000000 00112333333321 233333335556666776666543 3333222221
Q ss_pred ccCcccEEEeccCCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCC-C
Q 039262 748 VFHSLRKIQIDDCNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWK-P 824 (885)
Q Consensus 748 ~~~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~-~ 824 (885)
.+.+|+.+.+.. +++.++ .+..+++|+.+.+.+ +.++.|+. ..+.++++|+.+.|.+ +++.|... .
T Consensus 261 ~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~------~aF~~c~~L~~i~lp~--~l~~I~~~aF 329 (379)
T 4h09_A 261 NCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEP------RVFMDCVKLSSVTLPT--ALKTIQVYAF 329 (379)
T ss_dssp TCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECT------TTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred eeehhccccccc--cceeccccccccccccccccccc-cccceehh------hhhcCCCCCCEEEcCc--cccEEHHHHh
Confidence 356677777654 344443 245667777777755 23555544 3566677777777642 34444322 2
Q ss_pred CCCCCcceEEE
Q 039262 825 LPFPHLKEMKV 835 (885)
Q Consensus 825 ~~~p~L~~L~i 835 (885)
..+++|+.+.+
T Consensus 330 ~~C~~L~~i~i 340 (379)
T 4h09_A 330 KNCKALSTISY 340 (379)
T ss_dssp TTCTTCCCCCC
T ss_pred hCCCCCCEEEE
Confidence 23445555444
No 206
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.72 E-value=3.3e-05 Score=82.87 Aligned_cols=137 Identities=19% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCcccc-CchhHh--ccccCCEeecCCC--C------ccccc
Q 039262 534 PTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFY-FPLVIS--KLVSLQHLDLSDT--N------VAVLP 602 (885)
Q Consensus 534 ~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~-lp~~i~--~L~~L~~L~L~~~--~------i~~Lp 602 (885)
..+|+|+.|.+++|..+ .++. +. +++|+.|+|..| .+.. ....+. .+++|++|+|+.+ . +..+.
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~--~~-~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK--KP-RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS--CB-CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCc-eecc--cc-CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 34567777777766222 2333 22 667777777766 4332 112233 5677777776421 1 22222
Q ss_pred hhh--hccCCCcEEecCCccccccccchhh--cCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccc
Q 039262 603 KEL--NALVNLKCLNLENAWMLTVIPRRLI--SSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 603 ~~l--~~L~~L~~L~l~~~~~l~~lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
..+ ..+++|++|++.+|......+..+. ..+++|++|+++.|.+.... .......+..+++|+.|+++.|.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcCC
Confidence 222 2467777777777643322222111 24667777777665433210 0011223345677777777766543
No 207
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.69 E-value=0.00044 Score=73.52 Aligned_cols=169 Identities=22% Similarity=0.222 Sum_probs=90.6
Q ss_pred CcccchHHHHHHHHHHHcc-----CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-----EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAI 228 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 228 (885)
..++|.+..++.+...+.. .....+.|+|++|+||||||+.+++.. ...|. ... +... ...+
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~~s-g~~~~~~~~----- 92 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---VTS-GPVLVKQGD----- 92 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---EEE-TTTCCSHHH-----
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---EEe-chHhcCHHH-----
Confidence 3578988887777666643 244689999999999999999999987 22211 111 1110 1111
Q ss_pred HHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccch--hcccccccCCCCC-------CC----------CCcE
Q 039262 229 GEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWER--VDLSKVGIPLPGR-------LN----------NKSK 289 (885)
Q Consensus 229 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--~~~~~~~~~l~~~-------~~----------~gs~ 289 (885)
.. .+...+ .++-++++|++... ...+.+...+... .+ ....
T Consensus 93 ------------------l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~ 152 (334)
T 1in4_A 93 ------------------MA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFT 152 (334)
T ss_dssp ------------------HH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCE
T ss_pred ------------------HH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeE
Confidence 10 111112 13346667776431 1111110000000 00 0112
Q ss_pred EE-EecCChhHhhhcc--CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 290 VV-FTTRSEEVCGLME--AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 290 ii-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
++ .|++...+...+. ....+.+++.+.++-.+++.+.+.......+ .+.+..|++.+.|.|-.+..
T Consensus 153 li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~---~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 153 LVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIE---DAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHTSTTCHHHHHH
T ss_pred EEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHhcCCChHHHHH
Confidence 22 3444433321111 1235789999999999999987642221122 45688999999999976543
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.66 E-value=0.00044 Score=77.06 Aligned_cols=176 Identities=16% Similarity=0.179 Sum_probs=100.7
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.++|.+..+++|.+.+.. ...+-|.|+|.+|+|||++|+.+++.. .. ..+.+.++
T Consensus 205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~------ 272 (489)
T 3hu3_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP------ 272 (489)
T ss_dssp GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH------
T ss_pred HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch------
Confidence 589999999998887642 345679999999999999999998875 22 22333321
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-------------cccccccCCCC-CCCCCc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-------------DLSKVGIPLPG-RLNNKS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~gs 288 (885)
++...+ ...........+.....+++.+|+||+++... ....+...+.. ....+.
T Consensus 273 ----~l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v 341 (489)
T 3hu3_A 273 ----EIMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (489)
T ss_dssp ----HHHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCE
T ss_pred ----Hhhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCce
Confidence 111111 11111222233334445678899999994211 01111111110 123345
Q ss_pred EEEEecCChhH-hhhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc-hhHHHH
Q 039262 289 KVVFTTRSEEV-CGLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL-PLALIT 358 (885)
Q Consensus 289 ~iivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl-PLai~~ 358 (885)
.||.||..... ...+ .....+.+...+.++-.+++...+.......+.. ...+++.+.|. +-.+..
T Consensus 342 ~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAA 413 (489)
T ss_dssp EEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred EEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHH
Confidence 66667765532 1111 2234688999999999999998875443222223 35566777774 444433
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.65 E-value=0.0006 Score=73.81 Aligned_cols=171 Identities=18% Similarity=0.193 Sum_probs=97.7
Q ss_pred cccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 210 DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L~s-- 281 (467)
T 4b4t_H 210 DVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSELVQ-- 281 (467)
T ss_dssp SCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCC--
T ss_pred HhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHhhc--
Confidence 578999998888776421 356789999999999999999999997 222 23333322110
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----------------ccccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----------------LSKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 285 (885)
. +.+.+.......+...-...+++|++|+++.... ...+...+.. ...
T Consensus 282 -----------k----~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 -----------K----YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -----------C----SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -----------c----cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 0 0111111122222223345789999999863210 0011111110 223
Q ss_pred CCcEEEEecCChhHh-----hhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 286 NKSKVVFTTRSEEVC-----GLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 286 ~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.+..||.||...+.. +...-...+.+..-+.++-.++|+.++.......+-+ ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 344566677554331 1112346788888888888999988775543222223 366778888754
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.63 E-value=5.4e-05 Score=69.69 Aligned_cols=45 Identities=27% Similarity=0.290 Sum_probs=36.2
Q ss_pred cccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|+...+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999887753 334457899999999999999999875
No 211
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00069 Score=73.60 Aligned_cols=172 Identities=16% Similarity=0.214 Sum_probs=97.9
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 3578999988888776532 245789999999999999999999997 222 23333332111
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----------------cccccccCCCC-CC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RL 284 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 284 (885)
.+.+.+.......+...-...+++|++|+++... .+..+...+.+ ..
T Consensus 254 ----------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 ----------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp ----------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred ----------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 0011111111222222234578999999986320 01111111110 22
Q ss_pred CCCcEEEEecCChhHhhh-c-c---CcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 285 NNKSKVVFTTRSEEVCGL-M-E---AHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
..+..||.||...+.... + . -...+.++.-+.++-.++|+.++.......+.+ ...+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 345567778766543221 1 1 234677887788888888887775443222333 356777787754
No 212
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00082 Score=72.88 Aligned_cols=172 Identities=18% Similarity=0.196 Sum_probs=92.5
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 4578999999888876531 245679999999999999999999997 222 23333332111
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----------------cccccccCCCC-CC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RL 284 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 284 (885)
.+.+.+.......+...-...++++++|+++... ....+...+.+ ..
T Consensus 245 ----------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 ----------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp ----------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred ----------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 0011111112222222334578999999985310 01111111110 12
Q ss_pred CCCcEEEEecCChhHh-----hhccCcceEEeccCCh-hhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 285 NNKSKVVFTTRSEEVC-----GLMEAHKKFKVECLSH-NDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
..+..||.||...+.. +...-...+.+..+++ ++-..+|..++.......+.+ ...+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 3455667777654321 1111234567766654 445566666654333222223 366777887753
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=2.4e-05 Score=75.49 Aligned_cols=118 Identities=16% Similarity=0.128 Sum_probs=83.4
Q ss_pred hhhcCCCcccEEEecCCCccc-----cCchhHhccccCCEeecCCCCccc-----cchhhhccCCCcEEecCCcccccc-
Q 039262 556 GFFQCMPRLKVLNLSGAKQLF-----YFPLVISKLVSLQHLDLSDTNVAV-----LPKELNALVNLKCLNLENAWMLTV- 624 (885)
Q Consensus 556 ~~~~~l~~Lr~L~Ls~~~~i~-----~lp~~i~~L~~L~~L~L~~~~i~~-----Lp~~l~~L~~L~~L~l~~~~~l~~- 624 (885)
..+...+.|++|+|++|..+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|. +..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHH
Confidence 347788999999999983343 355667778999999999998853 55667777899999999994 332
Q ss_pred ----ccchhhcCCCCCcEEEe--ecccccCCCCcccccchhhhcCCCCccEEEEEecccc
Q 039262 625 ----IPRRLISSFSSLHVLRM--FGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSR 678 (885)
Q Consensus 625 ----lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 678 (885)
+... +...++|++|++ .+|.+.... .......+...++|+.|+++.|.+.
T Consensus 109 g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g---~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEA-LQSNTSLIELRIDNQSQPLGNNV---EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHG-GGGCSSCCEEECCCCSSCCCHHH---HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHH-HHhCCCceEEEecCCCCCCCHHH---HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2332 567788999999 666654321 0112334566688888888877654
No 214
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.60 E-value=0.0032 Score=68.30 Aligned_cols=274 Identities=12% Similarity=0.083 Sum_probs=154.4
Q ss_pred CCCCCCCCceeeeccCCccccccCchhhcCCCcccEEEecCCCccccCch-hHhccccCCEeecCCCCccccchhhhccC
Q 039262 531 SGVPTCPYLLTLFLNNNKQLLIMDRGFFQCMPRLKVLNLSGAKQLFYFPL-VISKLVSLQHLDLSDTNVAVLPKELNALV 609 (885)
Q Consensus 531 ~~~~~~~~Lr~L~l~~~~~l~~~~~~~~~~l~~Lr~L~Ls~~~~i~~lp~-~i~~L~~L~~L~L~~~~i~~Lp~~l~~L~ 609 (885)
|.+....+|+.+.+.. .++.++...|.+|.+|+.++|..+ ++.+++ .+.++ +|..+.+.. .++.++...-...
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC
T ss_pred cccccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccC
Confidence 3344567888888876 488899999999999999999764 566654 35554 677777764 4667765433445
Q ss_pred CCcEEecCCccccccccchhhcCCCCCcEEEeecccccCCCCcccccchhhhcCCCCccEEEEEecccchhhhhhc----
Q 039262 610 NLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSSSDGIIREGELEELLGLKYLEVLSLTLNNSRALHCVLS---- 685 (885)
Q Consensus 610 ~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~---- 685 (885)
+|+.+.+..+ +..+....+.+. +|..+.+...-.. .....+..+.+++.+.+.............
T Consensus 114 ~L~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~v~~--------i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (379)
T 4h09_A 114 DLDDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKSVTT--------IKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNK 182 (379)
T ss_dssp CCSEEECCTT--CCEECTTTTTTC-CCCEEEECTTCCE--------ECSCTTTTCTTCCEEEECTTCSSEEEETTEEEET
T ss_pred CcccccCCCc--cccccccccccc-eeeeeeccceeec--------cccchhcccccccccccccccceeecccceeccc
Confidence 8999998765 455555444443 5665555432110 011224455566665554322111000000
Q ss_pred ------cccccccceeeEecCCCCCCcccccccccCCCcceEeecccCccceEEecccccccCCCcccccCcccEEEecc
Q 039262 686 ------SHRLRSCTQALYLKDFKSSKSLDVSALADLKHLKRLQIVECYELEELKMDYTGVVQNRSQPFVFHSLRKIQIDD 759 (885)
Q Consensus 686 ------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~ 759 (885)
.......+....+. ..........+..+.+|+.+.+... +..+...... .+.+|+.+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~---------~~~~L~~i~lp~ 249 (379)
T 4h09_A 183 NKTILESYPAAKTGTEFTIP--STVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY---------GMKALDEIAIPK 249 (379)
T ss_dssp TSSEEEECCTTCCCSEEECC--TTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTT---------TCSSCCEEEECT
T ss_pred ccceeccccccccccccccc--cceeEEeecccccccccceeeeccc--eeEEcccccc---------CCccceEEEcCC
Confidence 00000111111111 1122222234555677777776543 3333222221 467888888865
Q ss_pred CCCCCCCC--ccCCCCCcceEeEeccccccccccccccccccCccCCccceeecCCcccccccCCC-CCCCCCcceEEEc
Q 039262 760 CNKLKDLT--FLAFAPNLKSIEVNSCHGIQEIVSDVPEVMRNLNLFAKLQYLGLSSLSNFQSIYWK-PLPFPHLKEMKVI 836 (885)
Q Consensus 760 c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~i~~~~~~~~~~~~~~p~L~~L~L~~~~~l~~i~~~-~~~~p~L~~L~i~ 836 (885)
.++.+. .+..+.+|+.+.+.. .++.++. ..+.++++|+.+.+.+ ..++.+... ...+++|+.+.+.
T Consensus 250 --~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~------~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 250 --NVTSIGSFLLQNCTALKTLNFYA--KVKTVPY------LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp --TCCEECTTTTTTCTTCCEEEECC--CCSEECT------TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECC
T ss_pred --CccEeCccccceeehhccccccc--cceeccc------cccccccccccccccc-cccceehhhhhcCCCCCCEEEcC
Confidence 355553 356788899998854 4666654 3677889999998864 345555432 3346777777663
Q ss_pred ------------cCCCCCCCC
Q 039262 837 ------------HCNKLKKLP 845 (885)
Q Consensus 837 ------------~c~~L~~lp 845 (885)
+|.+|+.+-
T Consensus 319 ~~l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 319 TALKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp TTCCEECTTTTTTCTTCCCCC
T ss_pred ccccEEHHHHhhCCCCCCEEE
Confidence 566666643
No 215
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.57 E-value=0.0012 Score=67.23 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=93.3
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++++.+.+. . ...+-+.|+|.+|+||||+|+.+++.. ...| +.+..+.-..
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 468999988777765432 1 123468899999999999999999986 2222 3332221100
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc----------------ccccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD----------------LSKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------------~~~~~~~l~~-~~~ 285 (885)
.. ...........+.......+.++++|+++.... ...+...+.. ...
T Consensus 84 --------~~-------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------MF-------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------SC-------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------Hh-------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 00 011112222223333345678999999843210 0111111100 113
Q ss_pred CCcEEEEecCChhH-hhhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCC-chhHHH
Q 039262 286 NKSKVVFTTRSEEV-CGLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGG-LPLALI 357 (885)
Q Consensus 286 ~gs~iivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~G-lPLai~ 357 (885)
.+..||.||...+. .... .....+.+...+.++-.+++...+.......+.. ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 34567777765432 1111 1234677888888888888877764332221111 3456777777 554443
No 216
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.55 E-value=7.6e-05 Score=75.74 Aligned_cols=78 Identities=32% Similarity=0.371 Sum_probs=53.5
Q ss_pred CCCceeeeccCCccccccCc--hhhcCCCcccEEEecCCCccccCchhHhccc--cCCEeecCCCCccc-cc-------h
Q 039262 536 CPYLLTLFLNNNKQLLIMDR--GFFQCMPRLKVLNLSGAKQLFYFPLVISKLV--SLQHLDLSDTNVAV-LP-------K 603 (885)
Q Consensus 536 ~~~Lr~L~l~~~~~l~~~~~--~~~~~l~~Lr~L~Ls~~~~i~~lp~~i~~L~--~L~~L~L~~~~i~~-Lp-------~ 603 (885)
+++|++|+|++| .+..++. ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.+.. +| .
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 455666666666 4444332 34667888888888888 777663 455555 88999999988753 44 2
Q ss_pred hhhccCCCcEEec
Q 039262 604 ELNALVNLKCLNL 616 (885)
Q Consensus 604 ~l~~L~~L~~L~l 616 (885)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3678899998873
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=0.00017 Score=87.14 Aligned_cols=154 Identities=16% Similarity=0.267 Sum_probs=84.5
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcC--CCCCC--CEEEEEEEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLG--SPTNF--DVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~~f--~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
+.++||++++.++++.+.......+.++|.+|+||||+|+.+++.... +.... ..++++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---------- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---------- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----------
Confidence 358999999999999998766667899999999999999999987521 11111 1334443322100
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc--cCcEEEEEccccchh---c----cc---ccccCCCCCCCCCcEEEEecCChh
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK--EKKFVLLLDDIWERV---D----LS---KVGIPLPGRLNNKSKVVFTTRSEE 298 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~----~~---~~~~~l~~~~~~gs~iivTtR~~~ 298 (885)
+.. ...........+...+. +++.+|++|++.... . ++ .+...+. ..+..+|.||....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 01112222233333332 367899999996432 0 11 1111121 12344565554433
Q ss_pred H-----hh-hccCcceEEeccCChhhHHHHHHHHh
Q 039262 299 V-----CG-LMEAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 299 v-----~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
. .. .......+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 11 11122458999999999999997544
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.52 E-value=0.00085 Score=80.00 Aligned_cols=151 Identities=14% Similarity=0.168 Sum_probs=83.7
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCC--CCCCEEEEEEEcCccCHHHHHHHHHHHc
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSP--TNFDVVIWVVVSKDLRLENIQEAIGEKI 232 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l 232 (885)
+.++||+++++++...+......-+.++|.+|+|||++|+.+++...... ......-++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------------
Confidence 35899999999999999876666789999999999999999998852111 1111111111111
Q ss_pred CCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHhh-------hccC
Q 039262 233 GLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVCG-------LMEA 305 (885)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~~-------~~~~ 305 (885)
+.. ..+.........+......++.+|++|. .......+...+. ....++|.||....... ....
T Consensus 245 g~~---~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~rR 316 (758)
T 3pxi_A 245 GTK---YRGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALERR 316 (758)
T ss_dssp -----------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHHS
T ss_pred ccc---ccchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHhh
Confidence 000 0011111222223333346778999992 1222222333332 23456666665443110 0112
Q ss_pred cceEEeccCChhhHHHHHHHHhc
Q 039262 306 HKKFKVECLSHNDAWELFRQKVG 328 (885)
Q Consensus 306 ~~~~~l~~L~~~e~~~Lf~~~~~ 328 (885)
...+.++..+.++..+++.....
T Consensus 317 f~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 317 FQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHTTT
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 24689999999999999997654
No 219
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00088 Score=72.67 Aligned_cols=171 Identities=15% Similarity=0.201 Sum_probs=96.4
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l~~- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQLVQ- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGGCS-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhhhh-
Confidence 3578999999988876431 245789999999999999999999997 222 23333322110
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccch-------hc---------ccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWER-------VD---------LSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~---------~~~~~~~l~~-~ 283 (885)
.+.+.+ +.....+.. .-...+++|++|+++.. .. ...+...+.+ .
T Consensus 254 ----------------~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 254 ----------------MYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp ----------------SCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred ----------------cccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 001111 122222222 22357899999998531 00 1111111211 1
Q ss_pred CCCCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 284 LNNKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
...+..||.||...+.... + .-...+.++.-+.++-.++|+.++.......+-+ ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2234456667766543221 1 1245678888888888888887664332222223 366778887753
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=3.6e-05 Score=73.93 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 160 LQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 160 r~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+..++.+.+++.+ .....+.|+|+.|+||||||+.+++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 44455555555543 245789999999999999999999886
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0015 Score=69.88 Aligned_cols=171 Identities=19% Similarity=0.234 Sum_probs=96.2
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~---fi~v~~s~l~s- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SAT---FLRIVGSELIQ- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCE---EEEEESGGGCC-
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCC---EEEEEHHHhhh-
Confidence 3578999988888776531 245789999999999999999999997 222 22233222110
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHH-HhccCcEEEEEccccchh----------------cccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR-NLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~ 283 (885)
. +...+ +.....+.. .-...+++|++|+++... ....+...+.. .
T Consensus 255 ------------k----~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 255 ------------K----YLGDG-PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp ------------S----SSSHH-HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred ------------c----cCchH-HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 0 01111 222222222 223568999999986320 00011111100 2
Q ss_pred CCCCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 284 LNNKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
...+..||.||...+.... + .-...+.+..-+.++-.++|..++.......+-+ ...|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 2344556667765543221 1 1234577777788888889988775543233333 356777787754
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.46 E-value=0.00091 Score=79.90 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=89.6
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCC--C-CCCCEEEEE-EEcCccCHHHHHHHHHH
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGS--P-TNFDVVIWV-VVSKDLRLENIQEAIGE 230 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~-~~f~~~~wv-~~s~~~~~~~~~~~i~~ 230 (885)
+.++||+.+++++++.|......-+.|+|.+|+||||+|+.+++..... . ...+..+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------------
Confidence 3589999999999999988777788999999999999999998875210 0 012223221 11110
Q ss_pred HcCCCCccccccchhHHHHHHHHHhc-cCcEEEEEccccch----------hc-ccccccCCCCCCCCCcEEEEecCChh
Q 039262 231 KIGLVNDTWKNRRTEQKALDIFRNLK-EKKFVLLLDDIWER----------VD-LSKVGIPLPGRLNNKSKVVFTTRSEE 298 (885)
Q Consensus 231 ~l~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~----------~~-~~~~~~~l~~~~~~gs~iivTtR~~~ 298 (885)
.... . .....+.....+.+.+. .++.+|++||+... .+ ...+...+. ..+..+|.+|....
T Consensus 254 -~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~ 326 (758)
T 1r6b_X 254 -LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQE 326 (758)
T ss_dssp --CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHH
T ss_pred -hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchH
Confidence 0000 0 11122333333333333 35789999999643 11 112222222 23456666666544
Q ss_pred Hhhhc-------cCcceEEeccCChhhHHHHHHHHh
Q 039262 299 VCGLM-------EAHKKFKVECLSHNDAWELFRQKV 327 (885)
Q Consensus 299 v~~~~-------~~~~~~~l~~L~~~e~~~Lf~~~~ 327 (885)
..... .....+.+...+.++..+++....
T Consensus 327 ~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 112368899999999988887654
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.45 E-value=0.0009 Score=70.35 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=38.6
Q ss_pred CcccchHHHHHHHHHHHcc--------------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ--------------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..++.+...+.. .....+.|+|.+|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999998887754 234578899999999999999999987
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.45 E-value=0.00015 Score=74.59 Aligned_cols=173 Identities=20% Similarity=0.159 Sum_probs=89.2
Q ss_pred CcccchHHHHHHHHHHHcc------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLVQ------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++.+.+.+.. ...+-+.|+|.+|+|||++|+.+++.. . ..|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~--~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-H--VPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-T--CCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EechHHHH---
Confidence 4688988777777665431 123447899999999999999999986 2 2221 11111100
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh-----------------cccccccCCCCC--
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV-----------------DLSKVGIPLPGR-- 283 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------------~~~~~~~~l~~~-- 283 (885)
...... ........ +......++.+|++||++... ....+...+...
T Consensus 82 -------~~~~~~----~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGL----GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSS----CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------Hhhcch----HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 000000 00111111 122223467899999995421 122222222211
Q ss_pred CCCCcEEEEecCChhHhh-h-c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh
Q 039262 284 LNNKSKVVFTTRSEEVCG-L-M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL 354 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 354 (885)
......||.||....... . . .....+.+...+.++-.+++...+.......+..+ ..+++.+.|.|-
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~g~~g 219 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNL----QEVAKLTAGLAG 219 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCT----TTTTSSSCSSCH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCH----HHHHHHcCCCCH
Confidence 112245666776553211 1 1 12346788888999999999887643321111122 335555666543
No 225
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.31 E-value=3.5e-05 Score=71.14 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEc
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVS 216 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 216 (885)
.++|...+. +..+..-....++|+|..|+|||||++.+++.... ..+ .++++...
T Consensus 19 f~~g~n~~~---~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~ 73 (149)
T 2kjq_A 19 FLGTENAEL---VYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAA 73 (149)
T ss_dssp CCSCCTHHH---HHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETT
T ss_pred cCcCccHHH---HHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHH
Confidence 345555433 33333225578999999999999999999998732 222 25565543
No 226
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=0.0028 Score=69.93 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=95.8
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++++.+.+. . ...+-|.|+|++|+|||+||+.+++.. ...| +.++.+.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~-- 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVE-- 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHH--
Confidence 468999987777666542 2 123458899999999999999999987 2222 2333322111
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh----------------cccccccCCCC-CCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RLN 285 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 285 (885)
.+ ...........+.....+.+.+|+||+++... ....+...+.. ...
T Consensus 88 --------~~-------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 88 --------LF-------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp --------CC-------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred --------HH-------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 00 01111122223334445678999999995421 11111111100 112
Q ss_pred CCcEEEEecCChhHhhh--c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 286 NKSKVVFTTRSEEVCGL--M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 286 ~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.+..||.||...+.... . .-...+.++..+.++-.+++..++.......+.+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 35567777776644221 1 1234678888888888888887765433222222 344778888876
No 227
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.28 E-value=0.00055 Score=66.89 Aligned_cols=114 Identities=23% Similarity=0.191 Sum_probs=60.7
Q ss_pred HHHHHHHHHHccC----CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc
Q 039262 162 SQLERVWRCLVQE----PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVND 237 (885)
Q Consensus 162 ~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 237 (885)
..++.+.+++... ..+.+.|+|.+|+||||||+.+++... .....++|+.++ .+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA---KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 3455555555443 127899999999999999999999872 223345666543 344444433211
Q ss_pred cccccchhHHHHHHHHHhccCcEEEEEccccc--hhcccc--ccc-CCCCCCCCCcEEEEecCC
Q 039262 238 TWKNRRTEQKALDIFRNLKEKKFVLLLDDIWE--RVDLSK--VGI-PLPGRLNNKSKVVFTTRS 296 (885)
Q Consensus 238 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~--~~~-~l~~~~~~gs~iivTtR~ 296 (885)
...... .+.+.+. -+|||||++. ...|.. +.. .+......+.++|+||..
T Consensus 104 ----~~~~~~----~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEK----LDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHH----HHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHH----HHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 111222 2223332 3999999954 223322 211 111011235578888874
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.21 E-value=9.5e-05 Score=67.80 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|++..+.++.+.+.. ....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578999988888887753 334457899999999999999997764
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.20 E-value=0.0025 Score=70.85 Aligned_cols=46 Identities=26% Similarity=0.286 Sum_probs=36.2
Q ss_pred CcccchHHHHHHHHHH---HccC--CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRC---LVQE--PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~---L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.++.++.+... +..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 4689999887765444 3333 33578999999999999999999987
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.17 E-value=0.00061 Score=71.78 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=38.0
Q ss_pred cccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..++.+...+... ....+.++|.+|+|||++|+.+++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 5789999988888877642 23589999999999999999999986
No 231
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.15 E-value=0.0013 Score=67.48 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=34.8
Q ss_pred cccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..+.++.+.+.. .....|.|+|..|+|||++|+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 578999988888776643 334568899999999999999999876
No 232
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.01 E-value=0.0023 Score=74.97 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=96.6
Q ss_pred cccchHHHHHHHHHHHc----c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 156 TVVGLQSQLERVWRCLV----Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.|..+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~~----- 273 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGPE----- 273 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHHH-----
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhHH-----
Confidence 46788877777766542 1 245679999999999999999999986 222 23343221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchh--------c-----ccccccCCCC-CCCCCc
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERV--------D-----LSKVGIPLPG-RLNNKS 288 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~-----~~~~~~~l~~-~~~~gs 288 (885)
+.... .......+...+.......+.+|+||+++... . ...+...+.. ....+.
T Consensus 274 -----l~sk~-------~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 274 -----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----HHSSC-------TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred -----hhccc-------chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 11111 11122222233333445678999999986421 0 0111111100 112234
Q ss_pred EEEEecCChhH-hhhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchh
Q 039262 289 KVVFTTRSEEV-CGLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPL 354 (885)
Q Consensus 289 ~iivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPL 354 (885)
.||.||...+. -..+ .-...+.+...+.++-.++|..+........+.+ ...|++++.|.--
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 45556655432 1111 1245688888888888999987765443223333 4667888887653
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.96 E-value=0.0021 Score=67.16 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=37.8
Q ss_pred CcccchHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3589999999888887754 344568899999999999999999875
No 234
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.88 E-value=0.0016 Score=77.54 Aligned_cols=60 Identities=23% Similarity=0.376 Sum_probs=43.4
Q ss_pred CcccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 155 ATVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 45899999998888877531 223799999999999999999998862 2222344555543
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.79 E-value=0.034 Score=56.85 Aligned_cols=150 Identities=17% Similarity=0.177 Sum_probs=81.6
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.++.|.++.+++|.+.+.. .-.+-+.++|++|+||||||+.++... . . ..+.+..+.-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-G--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-T--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-C--C---CEEEEEcHHHHhh
Confidence 3578888888887765431 112239999999999999999999986 2 1 2344432221100
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchhc---------c----cccccCCCC-CCCC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERVD---------L----SKVGIPLPG-RLNN 286 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~---------~----~~~~~~l~~-~~~~ 286 (885)
...........+.+.. ...+.++++|+++.... . ..+...+.. ....
T Consensus 84 ------------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 ------------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ------------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0000111122222222 34578999999853210 0 001111110 1122
Q ss_pred CcEEEEecCChhHhhhc-----cCcceEEeccCChhhHHHHHHHHhc
Q 039262 287 KSKVVFTTRSEEVCGLM-----EAHKKFKVECLSHNDAWELFRQKVG 328 (885)
Q Consensus 287 gs~iivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~ 328 (885)
..-++.+|...++.... .-...+.++..+.++-.++|.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34455677766553221 2345678888899999999987763
No 236
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.03 Score=57.50 Aligned_cols=171 Identities=18% Similarity=0.194 Sum_probs=88.1
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..++++.+... . .-.+-+.|+|..|+||||||+.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~-----~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C-----CCEEEecHH------
Confidence 468898877766655432 1 111238999999999999999999886 2 122333221
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh----------------cccccccCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV----------------DLSKVGIPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~----------------~~~~~~~~l~~-~~ 284 (885)
. +..... . ........+.+.. ...+.++++|++.... ....+...+.. ..
T Consensus 108 ~----~~~~~~-------~-~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 D----FVEMFV-------G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp H----HHHSTT-------T-HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred H----HHHHHh-------h-HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 1 111100 0 0011112222222 2356899999984210 01111111220 11
Q ss_pred CCCcEEEEecCChhHhh-----hccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 285 NNKSKVVFTTRSEEVCG-----LMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
.....++.||...++.. ...-...+.+...+.++-.+++...+.......+.. ...++..+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 12234444666554421 112345688888888888888887664332122222 345677777754
No 237
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.75 E-value=0.04 Score=55.66 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=87.8
Q ss_pred CcccchHHHHHHHHHHHc---c---------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---Q---------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..+.++.+... . .-.+-+.|+|.+|+||||||+.+++.. . . ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~---~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEeeHH------
Confidence 457898877666554432 1 112238999999999999999999886 2 1 12333211
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh------------c----ccccccCCCC-CC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV------------D----LSKVGIPLPG-RL 284 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 284 (885)
. +..... . ........+.+.. ...+.++++|++.... . ...+...+.. ..
T Consensus 84 ~----~~~~~~-------~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 D----FVEMFV-------G-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp H----HHHSCT-------T-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred H----HHHHHh-------h-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 1 111110 0 0111122223332 2356899999984211 0 1111111210 11
Q ss_pred CCCcEEEEecCChhHhhh-c----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 285 NNKSKVVFTTRSEEVCGL-M----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 285 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
....-++.||...++... . .-...+.++..+.++-.+++...+.......+.+ ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 122344556666654221 1 1234678888888888888877664332122222 345677777654
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.59 E-value=0.0053 Score=73.11 Aligned_cols=172 Identities=17% Similarity=0.197 Sum_probs=91.7
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
.+++|.+..+++|.+.+.. .....|.|+|.+|+||||||+.+++.. ...| +.+..+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGPE---- 273 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHHH----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEchH----
Confidence 3578998888888877642 244579999999999999999998876 2222 3333211
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHhccCcEEEEEccccchhc-------------ccccccCCCC-CCCCC
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKEKKFVLLLDDIWERVD-------------LSKVGIPLPG-RLNNK 287 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~g 287 (885)
+. ... ...........+.......+.++++|++..... ...+...+.. ....+
T Consensus 274 ------l~---~~~----~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 274 ------IM---SKL----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp ------HS---SSS----TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred ------hh---hhh----hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 10 000 111112222223333345678999999843210 0111111110 11234
Q ss_pred cEEEEecCChh-Hhhhc----cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 288 SKVVFTTRSEE-VCGLM----EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 288 s~iivTtR~~~-v~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
..+|.||.... +...+ .-...+.+...+.++-.+++...+.........++ ..++..+.|..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l----~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCT----HHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchh----HHHHHhhcCcc
Confidence 45566665542 21111 12245678888889988988877644332222222 34555555543
No 239
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.56 E-value=0.011 Score=67.07 Aligned_cols=45 Identities=33% Similarity=0.392 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHHcc------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQ------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+++|.++....+.+.+.- ....++.++|++|+||||||+.++...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 478888877777554421 245689999999999999999999987
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.52 E-value=0.022 Score=63.19 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=90.9
Q ss_pred CcccchHHHHHHHHHHHc---cC---------CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH
Q 039262 155 ATVVGLQSQLERVWRCLV---QE---------PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE 222 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 222 (885)
.+++|.+..+.++.+... .. -.+-|.|+|.+|+||||||+.+++.. . . ..+.++.+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~--~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-T--C---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEEehhHHHH--
Confidence 468999887776665432 21 12348999999999999999999886 2 1 233333322100
Q ss_pred HHHHHHHHHcCCCCccccccchhHHHHHHHHHhcc----CcEEEEEccccchh----------------cccccccCCCC
Q 039262 223 NIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNLKE----KKFVLLLDDIWERV----------------DLSKVGIPLPG 282 (885)
Q Consensus 223 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdv~~~~----------------~~~~~~~~l~~ 282 (885)
.........++..++. .+.++++|+++... ....+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112223333332 35799999995321 01112111210
Q ss_pred -CCCCCcEEEEecCChhHhhh--c---cCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCch
Q 039262 283 -RLNNKSKVVFTTRSEEVCGL--M---EAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLP 353 (885)
Q Consensus 283 -~~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlP 353 (885)
....+..|+.||..+++... . .-...+.++..+.++-.+++..++.......+.+ ...|+..+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 11234456667776654221 1 1234678888888888888877664322111222 345677777765
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.002 Score=66.29 Aligned_cols=68 Identities=24% Similarity=0.351 Sum_probs=44.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEE--cCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVV--SKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
.+++.|+|++|+||||||.+++... . ..++|+++ .... ... . .+.++....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G-----~~VlyIs~~~eE~v-------------~~~----~-~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-G-----GKDKYATVRFGEPL-------------SGY----N-TDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-H-----TTSCCEEEEBSCSS-------------TTC----B-CCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-C-----CCEEEEEecchhhh-------------hhh----h-cCHHHHHHHHHH
Confidence 4578899999999999999998752 1 12456666 2221 100 1 234455556666
Q ss_pred HhccCcEEEEEcccc
Q 039262 254 NLKEKKFVLLLDDIW 268 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~ 268 (885)
.+...+ ++|+|++.
T Consensus 179 ~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHCS-EEEEECCT
T ss_pred HHhhCC-EEEEeccc
Confidence 676666 99999983
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.24 E-value=0.015 Score=58.41 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----CCCEEEEEEEcCccCHHHHHHHHHHHcCCCCc----c---ccccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----NFDVVIWVVVSKDLRLENIQEAIGEKIGLVND----T---WKNRR 243 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 243 (885)
.-.++.|+|.+|+|||||+..++.... ... .-..++|+.....+....+ ..+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456999999999999999999988641 111 2357899987775554444 334455544321 0 01112
Q ss_pred hhH---HHHHHHHHhc-cCcEEEEEccc
Q 039262 244 TEQ---KALDIFRNLK-EKKFVLLLDDI 267 (885)
Q Consensus 244 ~~~---~~~~l~~~l~-~k~~LlVlDdv 267 (885)
..+ ....+.+.+. .+.-++|+|.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 222 2233444444 36678899987
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.22 E-value=0.011 Score=58.43 Aligned_cols=86 Identities=19% Similarity=0.248 Sum_probs=51.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc-------ccccch---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT-------WKNRRT--- 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~--- 244 (885)
.-.++.|+|.+|+||||||..++. . . -..++|++.....+...+.. +.+..+...+. ....+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 446999999999999999999987 3 1 14688888766555555443 34333321100 001111
Q ss_pred hHHHHHHHHHhccCcEEEEEccc
Q 039262 245 EQKALDIFRNLKEKKFVLLLDDI 267 (885)
Q Consensus 245 ~~~~~~l~~~l~~k~~LlVlDdv 267 (885)
.+....++..+..+.-++|+|.+
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCc
Confidence 22333444444444678999987
No 244
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.16 E-value=0.011 Score=62.61 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=55.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---ccccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---WKNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (885)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .+++++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 456999999999999999999988762 111347888877666643 45556554321 1223344444555
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
...++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 54443 455689999973
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.13 E-value=0.0034 Score=59.69 Aligned_cols=114 Identities=21% Similarity=0.160 Sum_probs=60.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc---cCHHHHHHHHHHHcCCCC----cc--ccccc---
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD---LRLENIQEAIGEKIGLVN----DT--WKNRR--- 243 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~~~----~~--~~~~~--- 243 (885)
...|-|++-.|.||||.|-...-+.. ++=-.+.++.+... .....++ +.+.... .. +...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l----~~L~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLL----EPHGVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHH----GGGTCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHH----HhCCcEEEEcccccccCCCCcHH
Confidence 45677777777999999988777752 22234556654332 2223333 3332100 00 11111
Q ss_pred ----hhHHHHHHHHHhccCcE-EEEEccccch-----hcccccccCCCCCCCCCcEEEEecCCh
Q 039262 244 ----TEQKALDIFRNLKEKKF-VLLLDDIWER-----VDLSKVGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 244 ----~~~~~~~l~~~l~~k~~-LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (885)
........++.+.+.+| |||||++-.. ...+++...+. .......||+|+|..
T Consensus 101 ~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 101 DTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 11222334455555555 9999998432 22233333333 344567899999986
No 246
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.04 E-value=0.041 Score=58.51 Aligned_cols=164 Identities=9% Similarity=-0.048 Sum_probs=98.6
Q ss_pred HHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhH
Q 039262 167 VWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQ 246 (885)
Q Consensus 167 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 246 (885)
+.+.+.+.-.++..++|..|.||++.+..+.+... ...|+....+.+....+..++...+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------- 70 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAA--AQGFEEHHTFSIDPNTDWNAIFSLCQA---------------- 70 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHH--HHTCCEEEEEECCTTCCHHHHHHHHHH----------------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHH--hCCCCeeEEEEecCCCCHHHHHHHhcC----------------
Confidence 33444434567999999999999999999888652 223432222223233333333222111
Q ss_pred HHHHHHHHhccCcEEEEEccccc---hhcccccccCCCCCCCCCcEEEEecCC-------hhHhhhc-cCcceEEeccCC
Q 039262 247 KALDIFRNLKEKKFVLLLDDIWE---RVDLSKVGIPLPGRLNNKSKVVFTTRS-------EEVCGLM-EAHKKFKVECLS 315 (885)
Q Consensus 247 ~~~~l~~~l~~k~~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~ 315 (885)
.-+-+++-++|+|++.. ...++.+...+. ....++.+|++|.. ..+...+ .....++..+++
T Consensus 71 ------~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 71 ------MSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp ------HHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred ------cCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 11235567888999854 234455554444 34557777776543 2333332 345678999999
Q ss_pred hhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCchhHHHH
Q 039262 316 HNDAWELFRQKVGGETLNCHPDILELAETVAKECGGLPLALIT 358 (885)
Q Consensus 316 ~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~GlPLai~~ 358 (885)
.++....+.+.+.......+ .+.+..+++.++|...++..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhchHHHHHHH
Confidence 99999888887743322222 35688899999998887754
No 247
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.03 E-value=0.025 Score=59.50 Aligned_cols=92 Identities=17% Similarity=0.263 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCC---CCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc-------ccccch
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSP---TNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT-------WKNRRT 244 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 244 (885)
.-.++.|+|.+|+||||||.+++....... +.-..++|++....++..++. .+++.++...+. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 456999999999999999999988752110 013478999988877766654 345666543210 011122
Q ss_pred h---HHHHHHHHHhc--cCcEEEEEccc
Q 039262 245 E---QKALDIFRNLK--EKKFVLLLDDI 267 (885)
Q Consensus 245 ~---~~~~~l~~~l~--~k~~LlVlDdv 267 (885)
+ +....+...+. .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23334444444 35568888887
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.95 E-value=0.013 Score=69.92 Aligned_cols=46 Identities=24% Similarity=0.383 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHHcc---------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ---------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..++.+...+.. .....+.++|.+|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3578999999888877653 123479999999999999999999887
No 249
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.94 E-value=0.02 Score=58.65 Aligned_cols=86 Identities=15% Similarity=0.189 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDIFR 253 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~ 253 (885)
.++-|.|.+|+||||||.+++....+ ...-..++||+....++.. .+++++...+.. ...+.++....+.+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 47899999999999999988777621 1113478999988877753 367777654321 12233343122223
Q ss_pred Hh----ccCcEEEEEcccc
Q 039262 254 NL----KEKKFVLLLDDIW 268 (885)
Q Consensus 254 ~l----~~k~~LlVlDdv~ 268 (885)
.+ .++.-++|+|-|-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 3467899999983
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.93 E-value=0.018 Score=61.12 Aligned_cols=86 Identities=16% Similarity=0.189 Sum_probs=54.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++.|+|.+|+||||||.+++.... ..-..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 457999999999999999999887652 112458899887766643 255565433211 122334444444
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
..... .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 44443 346699999983
No 251
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.91 E-value=0.012 Score=61.01 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+.+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44688999999999999999999987
No 252
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.87 E-value=0.033 Score=59.03 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC----CCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPT----NFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-.++.|+|.+|+||||||.+++.... ... .-..++|++....++..++. .++..++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~-~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQ-LPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTT-SCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 456999999999999999999988752 111 23578999988877766654 34555554
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.80 E-value=0.019 Score=60.90 Aligned_cols=85 Identities=20% Similarity=0.156 Sum_probs=53.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .+..++...+.. ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4569999999999999999998877621 12368899987776643 245555432211 112233333334
Q ss_pred HHHhc-cCcEEEEEccc
Q 039262 252 FRNLK-EKKFVLLLDDI 267 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv 267 (885)
....+ .+.-+||+|.+
T Consensus 134 ~~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 134 DALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHHTCCSEEEEECG
T ss_pred HHHHhccCCCEEEEcCH
Confidence 33332 34559999997
No 254
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.79 E-value=0.022 Score=60.63 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=55.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---ccccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDT---WKNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 251 (885)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 4568999999999999999998877621 12368999988766643 24555543221 1122344555555
Q ss_pred HHHhcc-CcEEEEEccc
Q 039262 252 FRNLKE-KKFVLLLDDI 267 (885)
Q Consensus 252 ~~~l~~-k~~LlVlDdv 267 (885)
....+. ..-+||+|.+
T Consensus 145 ~~l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHHHTTTCCSEEEEECT
T ss_pred HHHHhcCCCCEEEEeCh
Confidence 554443 4559999998
No 255
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.74 E-value=0.0047 Score=60.65 Aligned_cols=113 Identities=13% Similarity=-0.046 Sum_probs=61.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRN 254 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 254 (885)
.-.++.|+|..|+||||++..+.++.. .+-..++.+....+. + ....+++.++............+....+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~---~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE---YADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH---HTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 456899999999999999998888762 222234444433321 1 2224555555433221222233344444444
Q ss_pred hccCcE-EEEEccccch--hcccccccCCCCCCCCCcEEEEecCCh
Q 039262 255 LKEKKF-VLLLDDIWER--VDLSKVGIPLPGRLNNKSKVVFTTRSE 297 (885)
Q Consensus 255 l~~k~~-LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~iivTtR~~ 297 (885)
+.+.++ +||+|.+..- ...+.+. .+. ..|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~---~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN-ILA---ENGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH-HHH---HTTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH-HHH---hCCCeEEEEeccc
Confidence 444444 9999998532 2222222 121 1367788888854
No 256
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.71 E-value=0.012 Score=61.40 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHccC---CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 160 LQSQLERVWRCLVQE---PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 160 r~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+...++.+.+++..- ....+.|+|..|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344455555565542 25789999999999999999999986
No 257
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.67 E-value=0.012 Score=57.28 Aligned_cols=42 Identities=19% Similarity=0.412 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHHcc---CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 159 GLQSQLERVWRCLVQ---EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|++.+++|.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677888887765 345799999999999999999998865
No 258
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.59 E-value=0.018 Score=69.48 Aligned_cols=45 Identities=29% Similarity=0.430 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHccC---------CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQE---------PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..++.+...+... ....+.|+|..|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999888888777531 23589999999999999999999886
No 259
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.49 E-value=0.0088 Score=62.82 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=35.3
Q ss_pred HHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc
Q 039262 166 RVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL 219 (885)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (885)
+.++.+.. ..-..++|+|.+|+|||||++.+.+...+....+. ++++-+++..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 44555543 34568999999999999999998876521112333 4467777654
No 260
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.29 E-value=0.018 Score=51.32 Aligned_cols=51 Identities=25% Similarity=0.361 Sum_probs=28.7
Q ss_pred EEEecCCCccc--cCchhHhccccCCEeecCCCCccccchh-hhccCCCcEEecCCc
Q 039262 566 VLNLSGAKQLF--YFPLVISKLVSLQHLDLSDTNVAVLPKE-LNALVNLKCLNLENA 619 (885)
Q Consensus 566 ~L~Ls~~~~i~--~lp~~i~~L~~L~~L~L~~~~i~~Lp~~-l~~L~~L~~L~l~~~ 619 (885)
+++.+++ .++ .+|..+ -.+|++|+|++|.|..||.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555 555 555432 23566666666666666533 455666666666665
No 261
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.24 E-value=0.079 Score=57.45 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 262
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.23 E-value=0.04 Score=57.90 Aligned_cols=92 Identities=17% Similarity=0.258 Sum_probs=55.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC-----------CCCC--CEEEEEEEcCccCHHHHHHHHHHHcCCCCcc---
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS-----------PTNF--DVVIWVVVSKDLRLENIQEAIGEKIGLVNDT--- 238 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--- 238 (885)
.-+++.|+|.+|+||||+|.+++...... .+.. ..++|++....++..++.+ +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45699999999999999999988764110 1111 4789999888777666653 45555543210
Q ss_pred ----ccccchh---HHHHHHHHHhcc--CcEEEEEccc
Q 039262 239 ----WKNRRTE---QKALDIFRNLKE--KKFVLLLDDI 267 (885)
Q Consensus 239 ----~~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 267 (885)
....+.+ +....+...+.. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 223334444443 4458888887
No 263
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.20 E-value=0.016 Score=56.58 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 162 SQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 162 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+-+++|.+.+.. ....+|+|+|..|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666654 355799999999999999999998876
No 264
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.10 E-value=0.088 Score=57.09 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=46.7
Q ss_pred HHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHH
Q 039262 166 RVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEK 231 (885)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~ 231 (885)
+.++.+.- ..-.-++|+|.+|+|||+|++.+.+... +.+-+.++++-+++.. .+.++.+++.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 34555543 3456899999999999999999998862 3455778888888765 456677777665
No 265
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.07 E-value=0.051 Score=53.88 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEA 227 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 227 (885)
.-.+++|+|.+|+|||||++.++..... .-..++|+.... ....+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHH
Confidence 3469999999999999999999866521 112466665433 34444333
No 266
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.95 E-value=0.1 Score=56.23 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC---CCCCCEEEEEEEcCccCHHHHHHHHHHHcCCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS---PTNFDVVIWVVVSKDLRLENIQEAIGEKIGLV 235 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 235 (885)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....+....+ +.+++.++..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~ 239 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLD 239 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCC
Confidence 45699999999999999999876443110 112357889987776655544 3466666653
No 267
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.91 E-value=0.095 Score=51.80 Aligned_cols=59 Identities=25% Similarity=0.333 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CC-CCCEEEEEEEcCccCHHHHHHHHHHHcCC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS--PT-NFDVVIWVVVSKDLRLENIQEAIGEKIGL 234 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 234 (885)
.-.+++|+|..|+|||||++.++...... .. .-..++|+.......... ...+.+..+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 44699999999999999999998754110 01 234688887655444333 3344444443
No 268
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.82 E-value=0.063 Score=58.37 Aligned_cols=61 Identities=20% Similarity=0.333 Sum_probs=39.1
Q ss_pred HHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHH
Q 039262 168 WRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGE 230 (885)
Q Consensus 168 ~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~ 230 (885)
++.|.. ..-..++|+|.+|+|||||++.+..... ..+-+.++++-+++.. ...++..++.+
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 444433 1334689999999999999999888752 1223455677777654 34455555543
No 269
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.80 E-value=0.064 Score=56.85 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCC--CCCC-CEEEEEEEcCccCHHHHHHHHHHHcCCCCccc-------c---c
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGS--PTNF-DVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW-------K---N 241 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~---~ 241 (885)
.-.++.|+|..|+|||||+..++...+.. .+.. ..++|++....+...++ ..+++..+...... . .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 55799999999999999999998875211 1111 25589887665543333 34555554322100 0 0
Q ss_pred cchhHHHHHHHHHhc------cCcEEEEEcccc
Q 039262 242 RRTEQKALDIFRNLK------EKKFVLLLDDIW 268 (885)
Q Consensus 242 ~~~~~~~~~l~~~l~------~k~~LlVlDdv~ 268 (885)
....+....+...+. .+.=+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 111223333444443 356789999873
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.76 E-value=0.017 Score=54.78 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999986
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.70 E-value=0.018 Score=54.17 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999886
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.66 E-value=0.093 Score=54.11 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=46.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC-ccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK-DLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
...+++|+|.+|+||||++..++...... .. ..+..+.... .....+.+....+..+.... ...+.......+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLE-KH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHT-TC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999988776211 12 2345554332 22333334444444443321 1122233333333
Q ss_pred HhccCcEEEEEccc
Q 039262 254 NLKEKKFVLLLDDI 267 (885)
Q Consensus 254 ~l~~k~~LlVlDdv 267 (885)
.+ .+.=++|+|-.
T Consensus 179 ~~-~~~dlvIiDT~ 191 (296)
T 2px0_A 179 LF-SEYDHVFVDTA 191 (296)
T ss_dssp HG-GGSSEEEEECC
T ss_pred Hh-cCCCEEEEeCC
Confidence 33 34457788843
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.62 E-value=0.02 Score=60.51 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|+++.++.+...+..+ .-+.++|.+|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 36899999999988887663 368899999999999999999876
No 274
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.57 E-value=0.034 Score=55.00 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 161 QSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 161 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++..+.+...+......+|.|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4445555555555677899999999999999999998875
No 275
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.56 E-value=0.037 Score=49.22 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=47.8
Q ss_pred CEeecCCCCcc--ccchhhhccCCCcEEecCCccccccccchhhcCCCCCcEEEeecccccC
Q 039262 589 QHLDLSDTNVA--VLPKELNALVNLKCLNLENAWMLTVIPRRLISSFSSLHVLRMFGIGYSS 648 (885)
Q Consensus 589 ~~L~L~~~~i~--~Lp~~l~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~ 648 (885)
..++.+++.++ .+|..+. .+|++|+|++| .++.+|.+.+..+++|++|++.+|...-
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCeec
Confidence 47888999998 9996543 57999999999 7899999888999999999999876543
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.51 E-value=0.02 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.51 E-value=0.022 Score=55.08 Aligned_cols=26 Identities=35% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999886
No 278
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.47 E-value=0.11 Score=56.51 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=63.2
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCC-------Cc
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLV-------ND 237 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~ 237 (885)
.++.|.- ..-.-++|.|.+|+|||+|++.+.+... +.+-+.++++-+++.. ...++.+++.+.-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 3444443 3446799999999999999999999862 3456788888888765 4566777776643222 00
Q ss_pred c----ccccc------hhHHHHHHHHHhc---cCcEEEEEcccc
Q 039262 238 T----WKNRR------TEQKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 238 ~----~~~~~------~~~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
. ..+.. ....+..+.+++. ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 0 01111 1122233444444 589999999983
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.42 E-value=0.17 Score=54.92 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988877
No 280
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.41 E-value=0.044 Score=57.29 Aligned_cols=43 Identities=23% Similarity=0.198 Sum_probs=32.9
Q ss_pred cchHHHHHHHHHHHc----cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 158 VGLQSQLERVWRCLV----QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 158 vGr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 455666666666664 3455679999999999999999988875
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.29 E-value=0.12 Score=54.07 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.-.++.|.|.+|+||||+|.+++.... ..+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMS-DND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHH-TTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 456999999999999999999987763 222 578887755 4566666666554
No 282
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.29 E-value=0.025 Score=53.93 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999886
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.28 E-value=0.021 Score=53.72 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999886
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.25 E-value=0.025 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998865
No 285
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.25 E-value=0.19 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.++|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 286
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.23 E-value=0.023 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998764
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.21 E-value=0.006 Score=58.25 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++.|+|..|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999997766654
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.21 E-value=0.031 Score=54.13 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 173 QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.....+|+|+|+.|+||||+++.+....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998876
No 289
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.035 Score=54.65 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 158 VGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-+.++..+++...+.....++|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445566666666655678899999999999999999998876
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.16 E-value=0.043 Score=58.84 Aligned_cols=45 Identities=20% Similarity=0.180 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHc-------------c--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLV-------------Q--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..++.+...+. . ...+.|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999988888772 1 134578999999999999999999886
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.12 E-value=0.047 Score=56.14 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|..|+||||||+.+....
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999988776
No 292
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.10 E-value=0.047 Score=58.86 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=35.9
Q ss_pred cccchHHHHHHHHHHHc------------------------------cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLV------------------------------QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~------------------------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..++.|...+. ......+.++|++|+|||++|+.+++..
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 57888888888877662 0124568999999999999999999886
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.08 E-value=0.15 Score=52.50 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=48.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc-cCHHHHHHHHHHHcCCCCccc-cccchhHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD-LRLENIQEAIGEKIGLVNDTW-KNRRTEQKALDIFR 253 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~l~~ 253 (885)
..+++++|.+|+||||++..++..... .-..+.++..... ......++...+..+...-.. ...+..+......+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 569999999999999999998887621 1123555554322 222233444455544421100 11233344334444
Q ss_pred HhccCcE-EEEEccc
Q 039262 254 NLKEKKF-VLLLDDI 267 (885)
Q Consensus 254 ~l~~k~~-LlVlDdv 267 (885)
.++.+.| ++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 4442333 6777764
No 294
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.08 E-value=0.23 Score=51.80 Aligned_cols=27 Identities=33% Similarity=0.473 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+++|+|..|+||||+++.++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998876
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.06 E-value=0.028 Score=53.23 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 296
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.02 E-value=0.035 Score=61.67 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=37.5
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|+++.++.+...+..+ .-|.++|.+|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 5899999998888877654 478899999999999999999876
No 297
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.1 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
.-.++.|.|.+|+||||||.+++..... .-..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC
Confidence 3469999999999999999888766521 123577777544
No 298
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.94 E-value=0.027 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 299
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.93 E-value=0.1 Score=61.14 Aligned_cols=170 Identities=15% Similarity=0.215 Sum_probs=77.6
Q ss_pred CcccchHHHHHHHHHHHcc-------------CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCH
Q 039262 155 ATVVGLQSQLERVWRCLVQ-------------EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRL 221 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 221 (885)
..+.|.++.+++|.+.+.- ...+-|.++|++|+|||.+|+++++.. .. -++.++.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~-----~f~~v~~---- 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA-----NFISIKG---- 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TC-----EEEECCH----
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CC-----ceEEecc----
Confidence 3567888888888776532 133468899999999999999999987 21 1233321
Q ss_pred HHHHHHHHHHcCCCCccccccchhHHHHHHHHHh-ccCcEEEEEccccchh--------c--------ccccccCCCC-C
Q 039262 222 ENIQEAIGEKIGLVNDTWKNRRTEQKALDIFRNL-KEKKFVLLLDDIWERV--------D--------LSKVGIPLPG-R 283 (885)
Q Consensus 222 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 283 (885)
.+++... .+.+. .....+.+.. +..+.+|+||+++.-. + ..++...+.+ .
T Consensus 545 ----~~l~s~~-------vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 ----PELLTMW-------FGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ----HHHHTTT-------CSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ----chhhccc-------cchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 1122221 11222 2333333333 4578999999985320 0 1111111110 1
Q ss_pred CCCCcEEEEecCChhH-----hhhccCcceEEeccCChhhHHHHHHHHhcCCccCCCchhHHHHHHHHHHhCCc
Q 039262 284 LNNKSKVVFTTRSEEV-----CGLMEAHKKFKVECLSHNDAWELFRQKVGGETLNCHPDILELAETVAKECGGL 352 (885)
Q Consensus 284 ~~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~l~~~~~~i~~~c~Gl 352 (885)
...+.-||-||...+. .+...-...+.+..-+.++-.++|+.++.......+-++ ..+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 1223333335544332 111123456777666677777777766644332222233 4555666654
No 300
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.92 E-value=0.023 Score=60.62 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.+..+..+...+......-|.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 3589998876665544443333459999999999999999999876
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.92 E-value=0.13 Score=53.24 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHH--HHHHHHHHHcCCCCcc-ccccchhHH-HHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLE--NIQEAIGEKIGLVNDT-WKNRRTEQK-ALD 250 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~-~~~ 250 (885)
...+|.|+|.+|+||||++..++..... .. ..+.++... .+... +-+...++..+...-. ....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EG-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TT-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cC-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 4579999999999999999999887621 11 234455432 22221 2233444554432100 011122222 223
Q ss_pred HHHHhccCcEEEEEccc
Q 039262 251 IFRNLKEKKFVLLLDDI 267 (885)
Q Consensus 251 l~~~l~~k~~LlVlDdv 267 (885)
+...+....-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44444455558888865
No 302
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.88 E-value=0.031 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.341 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999886
No 303
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.85 E-value=0.037 Score=53.58 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998876
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.84 E-value=0.033 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987
No 305
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.81 E-value=0.037 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|.|++|+||||+++.++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999886
No 306
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.79 E-value=0.056 Score=51.53 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=27.1
Q ss_pred CCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCCCcc-----ccchhhhccCCCcEEecCCc
Q 039262 560 CMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDTNVA-----VLPKELNALVNLKCLNLENA 619 (885)
Q Consensus 560 ~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~-----~Lp~~l~~L~~L~~L~l~~~ 619 (885)
+-+.|+.|+|+++..+.. +.+.+..-.+|+.|+|++|.|. .|-+.+..-+.|++|+|++|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 334455555554312221 2333334445555555555542 22233444455555555555
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.79 E-value=0.036 Score=51.84 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999886
No 308
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.78 E-value=0.035 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999876
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.77 E-value=0.038 Score=52.99 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 310
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.69 E-value=0.038 Score=52.08 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.69 E-value=0.032 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999887
No 312
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.66 E-value=0.036 Score=58.74 Aligned_cols=114 Identities=19% Similarity=0.186 Sum_probs=62.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
....+++|+|+.|+||||+.+.+..... ......+ +++.++.... .. .....-...............+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i-~t~ed~~e~~--~~---~~~~~v~q~~~~~~~~~~~~~La~ 191 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHI-LTIEDPIEFV--HE---SKKCLVNQREVHRDTLGFSEALRS 191 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEE-EEEESSCCSC--CC---CSSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEE-EEccCcHHhh--hh---ccccceeeeeeccccCCHHHHHHH
Confidence 3456999999999999999999877651 1111122 2232221100 00 000000000001111234457888
Q ss_pred HhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhHh
Q 039262 254 NLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEVC 300 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v~ 300 (885)
.|...+=+|++|++.+...++.+.... ..|..||+||-..+.+
T Consensus 192 aL~~~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 192 ALREDPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HTTSCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSHH
T ss_pred HhhhCcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChHH
Confidence 888889999999997665555433322 2355688888776544
No 313
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.64 E-value=0.039 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|+|..|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.63 E-value=0.039 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 315
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.63 E-value=0.037 Score=53.70 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998875
No 316
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.59 E-value=0.042 Score=55.21 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999776
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.58 E-value=0.036 Score=53.86 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 318
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.57 E-value=0.029 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
|.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998875
No 319
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.56 E-value=0.065 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998875
No 320
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.54 E-value=0.039 Score=55.61 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999886
No 321
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.53 E-value=0.039 Score=57.43 Aligned_cols=41 Identities=24% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
++.+||+|.|-||+||||.+..+..-.++ .. ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~G-kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LG-KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TT-CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CC-CeEEEEecCC
Confidence 57899999999999999999888777631 11 2366666653
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.52 E-value=0.046 Score=52.07 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
....|+|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999887
No 323
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.52 E-value=0.034 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 324
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.49 E-value=0.19 Score=54.43 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...++.|+|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998887
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.48 E-value=0.041 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 326
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.45 E-value=0.047 Score=52.53 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|+.|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.38 E-value=0.044 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998876
No 328
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.38 E-value=0.047 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999998876
No 329
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.37 E-value=0.036 Score=52.78 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 330
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.35 E-value=0.043 Score=53.21 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 331
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.34 E-value=0.047 Score=53.28 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|..|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999998875
No 332
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.32 E-value=0.049 Score=52.90 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 333
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.30 E-value=0.049 Score=52.30 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 334
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.28 E-value=0.036 Score=52.08 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALI 196 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v 196 (885)
.-.+++|+|..|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999953
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.25 E-value=0.08 Score=55.02 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=31.5
Q ss_pred cchHHHHHHHHHHHccC----CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 158 VGLQSQLERVWRCLVQE----PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 158 vGr~~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|-...+..+...+... ...+|+|.|..|+||||+++.+..-.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555555555544432 34599999999999999999998776
No 336
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.20 E-value=0.043 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999886
No 337
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.17 E-value=0.055 Score=52.44 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|+.|+||||+|+.+....
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998876
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.16 E-value=0.052 Score=51.72 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|.|+.|+||||+|+.+....
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 339
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.15 E-value=0.042 Score=53.09 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999998765
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.10 E-value=0.054 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 341
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.07 E-value=0.06 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++++|+|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 342
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.07 E-value=0.058 Score=52.20 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
...+|+|+|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 5678999999999999999999775
No 343
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.06 E-value=0.058 Score=52.59 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999987
No 344
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.03 E-value=0.061 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998875
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.03 E-value=0.049 Score=52.94 Aligned_cols=22 Identities=50% Similarity=0.616 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.03 E-value=0.17 Score=64.81 Aligned_cols=86 Identities=20% Similarity=0.140 Sum_probs=56.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
..++|.|+|++|+|||+||.++..... ..=..++|+++...++... ++.++...+.. ...+.++....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 567999999999999999999988762 2234578888887776555 44555332211 112233444444
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
++..+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 44443 467799999984
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.99 E-value=0.056 Score=52.56 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|..|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998764
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.99 E-value=0.058 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999876
No 349
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.98 E-value=0.07 Score=57.95 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=36.8
Q ss_pred CcccchHHHHHHHHHHHcc--------------CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQ--------------EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|.++.++.+...+.. -..+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689998888888766522 134569999999999999999999987
No 350
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.96 E-value=0.073 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999999886
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.95 E-value=0.061 Score=52.43 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.91 E-value=0.042 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=18.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998876
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.90 E-value=0.06 Score=51.52 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999998874
No 354
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.89 E-value=0.057 Score=52.53 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44699999999999999999998876
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.84 E-value=0.11 Score=51.95 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHcc--CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 159 GLQSQLERVWRCLVQ--EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 159 Gr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+....+.++...... ....+|.|.|++|+||||+|+.+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 333444444443322 356789999999999999999998876
No 356
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.79 E-value=0.062 Score=51.99 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|.|+.|+||||+|+.+....
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 357
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.79 E-value=0.062 Score=51.47 Aligned_cols=25 Identities=36% Similarity=0.382 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.78 E-value=0.064 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 359
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.75 E-value=0.065 Score=49.40 Aligned_cols=27 Identities=41% Similarity=0.305 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..-.+++|+|..|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345699999999999999999998875
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.74 E-value=0.066 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.72 E-value=0.063 Score=54.10 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 44699999999999999999999876
No 362
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.67 E-value=0.16 Score=54.81 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=53.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCC----EEEEEEEcCcc-CHHHHHHHHHHHcCCCCc----cccccchh-
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFD----VVIWVVVSKDL-RLENIQEAIGEKIGLVND----TWKNRRTE- 245 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~- 245 (885)
-.-++|.|.+|+|||+|+.++.+.. ..+-+ .++++-+++.. .+.++.+++.+.-..... ...+....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~---~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQA---TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHC---BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHH---HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 3457899999999999999999886 22223 67777777654 455666665543211100 00111111
Q ss_pred -----HHHHHHHHHhc---cCcEEEEEcccc
Q 039262 246 -----QKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 246 -----~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
..+..+.+++. ++.+|+++||+-
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11223444443 689999999983
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.60 E-value=0.073 Score=51.87 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDV 209 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 209 (885)
..+|+|.|+.|+||||+|+.+..... ..+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998762 234554
No 364
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.56 E-value=0.056 Score=53.08 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44689999999999999999998865
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.55 E-value=0.072 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999999999999998876
No 366
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.48 E-value=0.072 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|+.|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.47 E-value=0.077 Score=51.82 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.47 E-value=0.078 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|+.|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999887
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.40 E-value=0.08 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|..|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998864
No 370
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.36 E-value=0.081 Score=53.27 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999999999999999998865
No 371
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.35 E-value=0.3 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|.+|+||||++..++...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998876
No 372
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.31 E-value=0.31 Score=50.91 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.-.++.|.|.+|+||||+|..++..... .-..++|++. ..+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 4469999999999999999999888632 2245677654 45566766666544
No 373
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.31 E-value=0.65 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|.|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999998776
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.29 E-value=0.046 Score=53.46 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|.|..|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999998876
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.27 E-value=0.078 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.24 E-value=0.081 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|.|..|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 377
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.23 E-value=0.079 Score=51.94 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999998876
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.13 E-value=0.057 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|+|..|+|||||++.+....
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999988876
No 379
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.10 E-value=0.089 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|.+|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.09 E-value=0.077 Score=52.24 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|+.|+||||+|+.++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999887
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.08 E-value=0.085 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 382
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.08 E-value=0.072 Score=53.31 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.07 E-value=0.091 Score=50.84 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+++.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998875
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.03 E-value=0.17 Score=48.31 Aligned_cols=38 Identities=13% Similarity=0.038 Sum_probs=28.6
Q ss_pred HHHHHHHHHccC-CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 163 QLERVWRCLVQE-PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 163 ~~~~l~~~L~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-+..+..++.+- ....+.|+|++|+||||+|..+++..
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 345555555442 23479999999999999999999887
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.03 E-value=0.074 Score=50.73 Aligned_cols=24 Identities=42% Similarity=0.409 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+++|+|..|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999988775
No 386
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.97 E-value=0.57 Score=49.25 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=35.0
Q ss_pred HHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCc
Q 039262 166 RVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKD 218 (885)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 218 (885)
++++.+.- ..-..++|+|.+|+|||+|++++.+........+. ++++-+++.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 55666654 34568999999999999999999887521112233 356666654
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.90 E-value=0.1 Score=49.37 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998875
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.83 E-value=0.096 Score=51.62 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999886
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.83 E-value=0.096 Score=51.08 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|.|.|+.|+||||+|+.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 390
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.80 E-value=0.12 Score=49.17 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=54.4
Q ss_pred CCCCceeeeccCCcccccc----CchhhcCCCcccEEEecCCCcccc-----CchhHhccccCCEeecCCCCccc-----
Q 039262 535 TCPYLLTLFLNNNKQLLIM----DRGFFQCMPRLKVLNLSGAKQLFY-----FPLVISKLVSLQHLDLSDTNVAV----- 600 (885)
Q Consensus 535 ~~~~Lr~L~l~~~~~l~~~----~~~~~~~l~~Lr~L~Ls~~~~i~~-----lp~~i~~L~~L~~L~L~~~~i~~----- 600 (885)
.-+.|+.|+|++|..+..- -...++.-..|+.|+|++| .+.. +-+.+..-..|++|+|++|.|..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3467888888764222211 1123566778999999998 6653 44555566789999999998843
Q ss_pred cchhhhccCCCcEEecCCc
Q 039262 601 LPKELNALVNLKCLNLENA 619 (885)
Q Consensus 601 Lp~~l~~L~~L~~L~l~~~ 619 (885)
|-+.+..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 3344555566888888754
No 391
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.66 E-value=0.1 Score=51.95 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.. .+++|+|..|+|||||.+.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998764
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.66 E-value=0.13 Score=59.19 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=37.4
Q ss_pred cccchHHHHHHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 156 TVVGLQSQLERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 156 ~~vGr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|.+..++.+...+..+ ..+.|+|.+|+||||||+.++...
T Consensus 42 ~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 42 QVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred eEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 5799998888887777664 589999999999999999999976
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.57 E-value=0.11 Score=50.94 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 039262 176 AGIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 394
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.57 E-value=0.11 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999876
No 395
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.57 E-value=0.69 Score=50.33 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHH-HHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----c
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLM-ALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----W 239 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~ 239 (885)
.++.+.- ..-.-++|.|..|+|||+|| ..+.+.. ..-..++++-+++.. .+.++.+++.+.-.+.... .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~at 227 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVAT 227 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEEC
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEEC
Confidence 3444433 34457899999999999996 4666542 222246788888765 4556666665543222100 0
Q ss_pred cccchh------HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 240 KNRRTE------QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 240 ~~~~~~------~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
.+.... .....+.+++ +++.+|+++||+-
T Consensus 228 ad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 228 ASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 111111 1111222333 4799999999983
No 396
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.55 E-value=0.12 Score=48.48 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 397
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.50 E-value=0.34 Score=53.27 Aligned_cols=52 Identities=12% Similarity=-0.017 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.-.++.|.|.+|+||||+|..++..... ..-..++|++.. .+..++...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECC--CCHHHHHHHHHH
Confidence 4469999999999999999998887631 112357776654 445666666554
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.44 E-value=0.21 Score=53.04 Aligned_cols=37 Identities=27% Similarity=0.421 Sum_probs=29.2
Q ss_pred HHHHHHHHc--cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 164 LERVWRCLV--QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 164 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 3467899999999999999999988776
No 399
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.44 E-value=0.11 Score=50.17 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987
No 400
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.40 E-value=0.16 Score=52.76 Aligned_cols=44 Identities=23% Similarity=0.331 Sum_probs=31.3
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc
Q 039262 173 QEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL 219 (885)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (885)
....++|+|+|-||+||||+|..++...++ . . ..++-|......
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G-~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-G-KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-T-CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHH-C-C-CeEEEEeCCCCC
Confidence 346789999999999999999998887732 1 1 246666665443
No 401
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.37 E-value=0.1 Score=52.36 Aligned_cols=24 Identities=38% Similarity=0.303 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
.-.+++|+|+.|+|||||++.+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456999999999999999999883
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.31 E-value=0.11 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999886
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.29 E-value=0.091 Score=51.74 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997654
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.27 E-value=0.12 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..|.|.|+.|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999887
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.25 E-value=0.21 Score=51.88 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|+|..|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998875
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.24 E-value=0.11 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999997664
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.23 E-value=0.11 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINN 198 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~ 198 (885)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.21 E-value=0.21 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34699999999999999999998876
No 409
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.18 E-value=0.12 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.17 E-value=0.12 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|..|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 411
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.15 E-value=0.077 Score=52.62 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH-Hhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALIN-NKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~-~~~ 200 (885)
.-.+++|+|+.|+|||||++.+. ...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999998 654
No 412
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.11 E-value=0.12 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|.|.|+.|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 413
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.08 E-value=0.14 Score=50.88 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 414
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.05 E-value=0.56 Score=51.31 Aligned_cols=51 Identities=14% Similarity=0.003 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
.-.++.|.|.+|+||||+|.+++.+... . -..++|++... +..++...+..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~-~--g~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD-N--DDVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH-T--TCEEEEECSSS--CTTHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH-c--CCEEEEEECCC--CHHHHHHHHHH
Confidence 4469999999999999999999888732 2 23677766543 34455554443
No 415
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.93 E-value=0.09 Score=51.01 Aligned_cols=24 Identities=33% Similarity=0.216 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
-.+++|+|..|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998765
No 416
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.82 E-value=0.27 Score=52.97 Aligned_cols=93 Identities=13% Similarity=0.179 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCC--------CCCC-EEEEEEEcCcc-CHHHHHHHHHHHcCCCC-----ccc
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSP--------TNFD-VVIWVVVSKDL-RLENIQEAIGEKIGLVN-----DTW 239 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~ 239 (885)
.-.-++|.|.+|+|||+|+.++++.. ... ++-+ .++++-+++.. .+.++.+++.+.-.... ...
T Consensus 146 rGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 146 RGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKA 224 (464)
T ss_dssp TTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEET
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECC
Confidence 33467899999999999999998876 221 1222 67777777654 45556666554311110 000
Q ss_pred cccchh-----HHHHHHHHHhc---cCcEEEEEcccc
Q 039262 240 KNRRTE-----QKALDIFRNLK---EKKFVLLLDDIW 268 (885)
Q Consensus 240 ~~~~~~-----~~~~~l~~~l~---~k~~LlVlDdv~ 268 (885)
+..... ..+..+.+++. ++.+|+++||+-
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 111111 11223444443 689999999983
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.80 E-value=0.11 Score=51.63 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997764
No 418
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.79 E-value=0.3 Score=53.28 Aligned_cols=97 Identities=16% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHH-HHHHHhhcCCCCCCC-EEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLM-ALINNKFLGSPTNFD-VVIWVVVSKDL-RLENIQEAIGEKIGLVNDT---- 238 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---- 238 (885)
.++.+.- ..-.-++|+|.+|+|||+|| ..+.+.. .-+ .++++-+++.. .+.++.+.+.+.-......
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 3444433 24457899999999999996 4676664 245 45777787765 4556666666543222110
Q ss_pred ccccch-hH-----HHHHHHHHh--ccCcEEEEEcccc
Q 039262 239 WKNRRT-EQ-----KALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 239 ~~~~~~-~~-----~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+... .. ....+.+++ +++.+|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 011111 11 112233333 4789999999983
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.76 E-value=0.14 Score=53.08 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999886
No 420
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.68 E-value=0.13 Score=51.52 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
.-.+++|+|..|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4469999999999999999999884
No 421
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=90.67 E-value=0.53 Score=53.64 Aligned_cols=133 Identities=16% Similarity=0.138 Sum_probs=0.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCC---------------------------CEEEEEEEcCccCHH-------
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNF---------------------------DVVIWVVVSKDLRLE------- 222 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---------------------------~~~~wv~~s~~~~~~------- 222 (885)
.+++|+|..|+|||||.+.+..-.....+.+ +....+...+..+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Q ss_pred ----------------HHHHHHHHHcCCCC----ccccccchhHHHHHHHHHhccCcEEEEEccc---cchhcccccccC
Q 039262 223 ----------------NIQEAIGEKIGLVN----DTWKNRRTEQKALDIFRNLKEKKFVLLLDDI---WERVDLSKVGIP 279 (885)
Q Consensus 223 ----------------~~~~~i~~~l~~~~----~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv---~~~~~~~~~~~~ 279 (885)
+...++++.+++.. ....-..-+.....+.+.|..++=+++||.- -+...-..+...
T Consensus 184 ~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~ 263 (608)
T 3j16_B 184 VQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQI 263 (608)
T ss_dssp SSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHH
Q ss_pred CCCCCCCCcEEEEecCChhHhhhccCcceE
Q 039262 280 LPGRLNNKSKVVFTTRSEEVCGLMEAHKKF 309 (885)
Q Consensus 280 l~~~~~~gs~iivTtR~~~v~~~~~~~~~~ 309 (885)
+......|..||++|-+...+..+.....+
T Consensus 264 l~~l~~~g~tvi~vtHdl~~~~~~~drv~v 293 (608)
T 3j16_B 264 IRSLLAPTKYVICVEHDLSVLDYLSDFVCI 293 (608)
T ss_dssp HHGGGTTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
No 422
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.66 E-value=0.58 Score=52.40 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEK 231 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 231 (885)
.-.++.|.|.+|+||||+|.+++.+.. . .+=..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a-~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWG-T-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHT-T-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHH-H-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 446899999999999999999998873 1 1123577776544 456776665443
No 423
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.63 E-value=0.11 Score=52.40 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.+..-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997754
No 424
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.60 E-value=0.11 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 45699999999999999999987654
No 425
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.50 E-value=0.45 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.|+|-|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999987
No 426
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.50 E-value=0.29 Score=53.05 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=58.3
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCC-CCCEEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----c
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPT-NFDVVIWVVVSKDL-RLENIQEAIGEKIGLVNDT----W 239 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~----~ 239 (885)
.++.+.- ..-.-++|.|.+|+|||+|+.++++.....+. .=+.++++-+++.. .+.++.+++.+.-.+.... .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 3444433 23456788999999999999999998621111 11467777777654 4556666666542211100 0
Q ss_pred cccch------hHHHHHHHHHhc---cCcEEEEEccc
Q 039262 240 KNRRT------EQKALDIFRNLK---EKKFVLLLDDI 267 (885)
Q Consensus 240 ~~~~~------~~~~~~l~~~l~---~k~~LlVlDdv 267 (885)
.+... ...+..+.+++. ++.+|+++||+
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111 112223344443 68999999998
No 427
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.46 E-value=0.12 Score=51.42 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999997764
No 428
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.45 E-value=0.12 Score=52.29 Aligned_cols=26 Identities=31% Similarity=0.609 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45699999999999999999998765
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.42 E-value=0.1 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999997764
No 430
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.42 E-value=0.15 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998764
No 431
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.41 E-value=0.12 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45699999999999999999987754
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.40 E-value=0.14 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
.-.+++|+|..|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999999999885
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.39 E-value=0.13 Score=50.93 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45699999999999999999998765
No 434
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.37 E-value=0.13 Score=51.97 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44699999999999999999997764
No 435
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.37 E-value=0.58 Score=51.47 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=41.3
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC-HHHHHHHH
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR-LENIQEAI 228 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 228 (885)
.++.+.- ..-..++|.|..|+|||+|++++++.. +-+.++++-+++... +.++++++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555543 345689999999999999999998764 225788888888765 44555554
No 436
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.32 E-value=0.51 Score=60.53 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=57.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++.|+|.+|+||||||.+++..... .-..++|++.....+... ++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 4569999999999999999999888732 223688988877776432 55666543211 223444555555
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
+.... .+.-++|+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 44433 456699999984
No 437
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.32 E-value=0.27 Score=48.50 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999998
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.28 E-value=0.16 Score=52.01 Aligned_cols=25 Identities=24% Similarity=0.466 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998876
No 439
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.26 E-value=0.15 Score=53.04 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|+|+.|+||||||..++...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999998876
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.26 E-value=0.13 Score=51.44 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.+..-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44699999999999999999997764
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.22 E-value=0.17 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999998876
No 442
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.15 E-value=0.16 Score=52.23 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..-.+++|+|..|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355799999999999999999998765
No 443
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.08 E-value=0.14 Score=51.22 Aligned_cols=26 Identities=31% Similarity=0.668 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999987654
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.05 E-value=0.14 Score=51.52 Aligned_cols=26 Identities=38% Similarity=0.607 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997754
No 445
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.03 E-value=0.24 Score=54.84 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=33.0
Q ss_pred ccchHHHHHHHHHHHc--cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 157 VVGLQSQLERVWRCLV--QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 157 ~vGr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+.|.+..+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 3555555555555542 2355789999999999999999999998
No 446
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.00 E-value=0.44 Score=52.55 Aligned_cols=51 Identities=12% Similarity=0.078 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIG 229 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 229 (885)
.-.++.|.|.+|+||||+|..++..... ..-..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCC--CHHHHHHHHH
Confidence 4469999999999999999999887621 1112577776543 4455555543
No 447
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.98 E-value=0.19 Score=50.81 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999877
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.96 E-value=0.47 Score=60.08 Aligned_cols=86 Identities=20% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-+++.|.|.+|+||||||.+++.... ..-..++|++.....+.. .++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH---HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 456999999999999999999888763 122468899888777653 256666543221 122344444444
Q ss_pred HHHhc-cCcEEEEEcccc
Q 039262 252 FRNLK-EKKFVLLLDDIW 268 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv~ 268 (885)
+.... .+.-++|+|-+.
T Consensus 454 ~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHhcCCCEEEECCHH
Confidence 44443 356699999984
No 449
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.93 E-value=0.14 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 45699999999999999999997764
No 450
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.89 E-value=0.14 Score=51.92 Aligned_cols=26 Identities=38% Similarity=0.709 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45699999999999999999997764
No 451
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=89.88 E-value=0.18 Score=50.96 Aligned_cols=113 Identities=16% Similarity=0.139 Sum_probs=57.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccccccchhHHHHHHHH
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTWKNRRTEQKALDIFR 253 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 253 (885)
..-.+++|+|+.|+|||||++.+..... ..+...+++.- ++.. .+.+. .........-..+.......+.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g-~~i~--~~~~~---~~~~v~q~~~gl~~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE-DPIE--YVFKH---KKSIVNQREVGEDTKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEE-SSCC--SCCCC---SSSEEEEEEBTTTBSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcC-Ccce--eecCC---cceeeeHHHhCCCHHHHHHHHHH
Confidence 4557999999999999999999887651 11122333221 1100 00000 00000000000011223455666
Q ss_pred HhccCcEEEEEccccchhcccccccCCCCCCCCCcEEEEecCChhH
Q 039262 254 NLKEKKFVLLLDDIWERVDLSKVGIPLPGRLNNKSKVVFTTRSEEV 299 (885)
Q Consensus 254 ~l~~k~~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~iivTtR~~~v 299 (885)
.+..++=++++|+.-+......+... ...|.-|++||-+.++
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~l~~----~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETALRA----AETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHHHHH----HHTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHHHHH----HccCCEEEEEeCcchH
Confidence 66667778999998644333222211 1235668888876544
No 452
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.88 E-value=0.15 Score=51.10 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 453
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.74 E-value=0.1 Score=53.72 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.74 E-value=0.17 Score=46.89 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 455
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.74 E-value=0.35 Score=50.91 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=32.9
Q ss_pred HccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc
Q 039262 171 LVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL 219 (885)
Q Consensus 171 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 219 (885)
+.....+++.+.|.||+||||+|..++...+.. ..-..++-|......
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~ 60 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAH 60 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSC
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCC
Confidence 334567899999999999999999988877200 122346666665433
No 456
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.72 E-value=0.36 Score=52.68 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=55.3
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHHH-HHHHhhcCCCCCCC-EEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc----
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLMA-LINNKFLGSPTNFD-VVIWVVVSKDL-RLENIQEAIGEKIGLVNDT---- 238 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~---- 238 (885)
.++.+.- ..-.-++|+|.+|+|||+||. .+.+.. .-+ .++++-+++.. .+.++.+.+.+.-.+....
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 3444433 344578999999999999964 666653 245 45777788765 4556666665532111100
Q ss_pred ccccch-h-----HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 239 WKNRRT-E-----QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 239 ~~~~~~-~-----~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+... . ..+..+.+++ +++.+|+++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 011111 1 1112233333 4789999999983
No 457
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.70 E-value=0.15 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999987754
No 458
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=89.69 E-value=0.18 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.366 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-.|+|+|..|+|||||.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998763
No 459
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.68 E-value=0.21 Score=52.04 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..++|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999988876
No 460
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.68 E-value=0.42 Score=50.01 Aligned_cols=47 Identities=23% Similarity=0.203 Sum_probs=33.8
Q ss_pred HccCCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccC
Q 039262 171 LVQEPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLR 220 (885)
Q Consensus 171 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 220 (885)
+.+...+++.+.|-||+||||+|..++...+ ..-..++-|......+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCC
Confidence 3345578899999999999999999998883 2223466666654443
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.67 E-value=0.15 Score=51.11 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.67 E-value=0.21 Score=49.57 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 463
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.66 E-value=0.39 Score=52.44 Aligned_cols=86 Identities=15% Similarity=0.217 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCCcHHHHHH-HHHHhhcCCCCCCC-EEEEEEEcCcc-CHHHHHHHHHHHcCCCC-----ccccccc----
Q 039262 176 AGIVGLYGMGGVGKTTLMA-LINNKFLGSPTNFD-VVIWVVVSKDL-RLENIQEAIGEKIGLVN-----DTWKNRR---- 243 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~---- 243 (885)
-.-++|+|.+|+|||+||. .+.+.. .-+ .++++-+++.. .+.++.+.+.+.-.+.. ...+...
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3578999999999999964 666653 245 46777887765 34455555544221110 0001101
Q ss_pred -hh----HHHHHHHHHhccCcEEEEEcccc
Q 039262 244 -TE----QKALDIFRNLKEKKFVLLLDDIW 268 (885)
Q Consensus 244 -~~----~~~~~l~~~l~~k~~LlVlDdv~ 268 (885)
.. ..++.++. +++.+|+++||+-
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dslt 265 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecHH
Confidence 11 12233333 4799999999983
No 464
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.65 E-value=0.38 Score=47.48 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWV 213 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 213 (885)
..+|.|.|..|+||||+++.+..... ..++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 46899999999999999999998873 3455534443
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.65 E-value=0.18 Score=52.25 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998853
No 466
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.64 E-value=0.2 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+-|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998763
No 467
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.62 E-value=0.76 Score=50.77 Aligned_cols=58 Identities=21% Similarity=0.301 Sum_probs=41.1
Q ss_pred HHHHHHcc-CCCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCcc-CHHHHHHHH
Q 039262 166 RVWRCLVQ-EPAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDL-RLENIQEAI 228 (885)
Q Consensus 166 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i 228 (885)
+.++.|.- ..-..++|.|..|+|||+|+.++.+.. +-+.++++-+++.. .+.++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34555543 345689999999999999999998874 23678888888763 344444443
No 468
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.60 E-value=0.16 Score=51.88 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45699999999999999999997765
No 469
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.55 E-value=0.19 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.50 E-value=0.21 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999886
No 471
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.48 E-value=0.36 Score=45.94 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44589999999999999999998764
No 472
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.37 E-value=0.53 Score=59.57 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHHHcCCCCccc---cccchhHHHHHH
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGEKIGLVNDTW---KNRRTEQKALDI 251 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 251 (885)
.-++|-|+|+.|+||||||.++.... +..=..++|+.+....+..- ++.++...+.. ...+-++....+
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 34799999999999999999988766 34446789998887777543 77887765432 222234444445
Q ss_pred HHHhc-cCcEEEEEccc
Q 039262 252 FRNLK-EKKFVLLLDDI 267 (885)
Q Consensus 252 ~~~l~-~k~~LlVlDdv 267 (885)
...++ +..-++|+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 45669999998
No 473
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.30 E-value=0.28 Score=47.66 Aligned_cols=37 Identities=32% Similarity=0.196 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 178 IVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
.|.+.|.||+||||+|..++.... ...++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL--RQGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH--HTTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCC
Confidence 588999999999999998888762 23344 34444443
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.28 E-value=0.19 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44699999999999999999988765
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.26 E-value=0.37 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999999875
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.24 E-value=0.15 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 039262 178 IVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999998764
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.21 E-value=0.42 Score=46.38 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcCccCHHHHHHHHHH
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSKDLRLENIQEAIGE 230 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 230 (885)
..|.|.|..|+||||+++.+..... ...+..+.+..-.......+..++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 5799999999999999999999873 234433333332222223344455544
No 478
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.21 E-value=0.11 Score=59.33 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=33.5
Q ss_pred CcccchHHHHHHHHHHHccCCCc-----------EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 155 ATVVGLQSQLERVWRCLVQEPAG-----------IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 155 ~~~vGr~~~~~~l~~~L~~~~~~-----------vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
+.++|.+..+..+.-.+.....+ -|.++|.+|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 35678887666665544443211 58999999999999999998765
No 479
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.12 E-value=0.2 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 039262 178 IVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 178 vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998764
No 480
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.04 E-value=0.2 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 174 EPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 174 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 481
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.00 E-value=0.28 Score=48.11 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999887
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.78 E-value=0.2 Score=47.42 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-+.|.|.|..|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999998765
No 483
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.77 E-value=0.22 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
--|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.74 E-value=0.26 Score=49.09 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
...|.|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 485
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.71 E-value=0.38 Score=45.53 Aligned_cols=34 Identities=29% Similarity=0.548 Sum_probs=26.6
Q ss_pred HHHHHHHccCCCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 165 ERVWRCLVQEPAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 165 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
..+.+ +.....-.|.|+|.+|+|||||...+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44555 44455678999999999999999999854
No 486
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.71 E-value=0.24 Score=51.17 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|.+|+|||||++.++...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999998876
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=88.68 E-value=0.23 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 488
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.66 E-value=0.2 Score=50.52 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
-.+++|+|..|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998654
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.62 E-value=0.54 Score=45.66 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEE
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVV 210 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~ 210 (885)
...|.|.|..|+||||+++.+..... ...++.+
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~--~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR--ERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH--HcCCCcc
Confidence 35899999999999999999999873 3345543
No 490
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.61 E-value=0.61 Score=50.40 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 173 QEPAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 173 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.....+++|+|+.|+||||+.+.+....
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 4556799999999999999999998876
No 491
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.59 E-value=0.7 Score=50.51 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=56.9
Q ss_pred HHHHHcc-CCCcEEEEEcCCCCcHHHHH-HHHHHhhcC---CCCCCC-EEEEEEEcCcc-CHHHHHHHHHHHcCCCCcc-
Q 039262 167 VWRCLVQ-EPAGIVGLYGMGGVGKTTLM-ALINNKFLG---SPTNFD-VVIWVVVSKDL-RLENIQEAIGEKIGLVNDT- 238 (885)
Q Consensus 167 l~~~L~~-~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~---~~~~f~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~- 238 (885)
.++.+.- ..-.-++|+|.+|+|||+|| ..+.+.... ..++-+ .++++-+++.. .+.++.+.+.+.-.+....
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvv 231 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIV 231 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceE
Confidence 4454443 34457899999999999995 466666510 012344 57788888765 4556666666532221100
Q ss_pred ---ccccchh------HHHHHHHHHh--ccCcEEEEEcccc
Q 039262 239 ---WKNRRTE------QKALDIFRNL--KEKKFVLLLDDIW 268 (885)
Q Consensus 239 ---~~~~~~~------~~~~~l~~~l--~~k~~LlVlDdv~ 268 (885)
..+.... .....+.+++ +++.+|+++||+-
T Consensus 232 V~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 232 VSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 0111111 1112233333 4789999999983
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.56 E-value=0.23 Score=52.33 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45699999999999999999998865
No 493
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.55 E-value=0.27 Score=46.39 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 176 AGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 176 ~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
..+.+|+|..|.|||||+.+++--.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3489999999999999999987764
No 494
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.54 E-value=0.23 Score=47.15 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
-.|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368899999999999999998764
No 495
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=88.43 E-value=0.32 Score=52.41 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
...+++|+|..|+|||||.+.+..-
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999884
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.43 E-value=0.34 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+|+|+|+.|+|||||++.++...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45699999999999999999999887
No 497
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.41 E-value=0.43 Score=48.36 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=28.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHhhcCCCCCCCEEEEEEEcC
Q 039262 177 GIVGLYGMGGVGKTTLMALINNKFLGSPTNFDVVIWVVVSK 217 (885)
Q Consensus 177 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 217 (885)
++|+|.|-||+||||+|..++...++ .. ..++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~--~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA--MG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT--TT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH--CC-CcEEEEcCCC
Confidence 57888999999999999999988732 22 2466666554
No 498
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.37 E-value=0.19 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|.|||||++.+..-.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 55799999999999999999987754
No 499
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.37 E-value=0.19 Score=49.72 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNK 199 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~ 199 (885)
...+|+|.|..|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4469999999999999999998765
No 500
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.22 E-value=0.25 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHhh
Q 039262 175 PAGIVGLYGMGGVGKTTLMALINNKF 200 (885)
Q Consensus 175 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 200 (885)
.-.+++|+|..|+|||||++.+..-.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 45699999999999999999998764
Done!