BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039263
(492 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
pdb|3I8V|B Chain B, Crystal Structure Of Human Pde4a With
4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone
Length = 354
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLKK++IP + T++L H +AY NSL+AA V+ P L A
Sbjct: 70 FQERDLLKKFRIPVDTMVTYMLTLEDHYHADVAYH--NSLHAADVLQSTHVLLATPALDA 127
Query: 457 IISEI 461
+ +++
Sbjct: 128 VFTDL 132
>pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
pdb|3TVX|B Chain B, The Structure Of Pde4a With Pentoxifylline At 2.84a
Resolution
Length = 338
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLKK++IP + T++L H +AY NSL+AA V+ P L A
Sbjct: 54 FQERDLLKKFRIPVDTMVTYMLTLEDHYHADVAYH--NSLHAADVLQSTHVLLATPALDA 111
Query: 457 IISEI 461
+ +++
Sbjct: 112 VFTDL 116
>pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
pdb|2QYK|B Chain B, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv
Length = 335
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLKK++IP + T++L H +AY NSL+AA V+ P L A
Sbjct: 51 FQERDLLKKFRIPVDTMVTYMLTLEDHYHADVAYH--NSLHAADVLQSTHVLLATPALDA 108
Query: 457 IISEI 461
+ +++
Sbjct: 109 VFTDL 113
>pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex
pdb|2PW3|B Chain B, Structure Of The Pde4d-Camp Complex
Length = 327
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 41 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 98
Query: 457 IIS--EIFGLKYYSTLYNFG 474
+ + EI + S ++N
Sbjct: 99 VFTDLEILAAIFASAIHNVD 118
>pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
pdb|3G4G|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Regulatory Domain And D155871
Length = 421
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 128 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 185
Query: 457 IISEI 461
+ +++
Sbjct: 186 VFTDL 190
>pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TB7|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Amp
pdb|1TBB|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
pdb|1TBB|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Rolipram
Length = 332
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 45 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 102
Query: 457 IISEI 461
+ +++
Sbjct: 103 VFTDL 107
>pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
pdb|2QYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv
Length = 328
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 41 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 98
Query: 457 IISEI 461
+ +++
Sbjct: 99 VFTDL 103
>pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XOM|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Cilomilast
pdb|1XON|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XON|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Piclamilast
pdb|1XOQ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOQ|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Roflumilast
pdb|1XOR|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1XOR|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With Zardaverine
pdb|1Y2B|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2B|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl
Ester
pdb|1Y2C|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2C|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5- Dimethyl-1-Phenyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2D|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Methoxy-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2E|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2E|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 1-(4-
Amino-Phenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid
Ethyl Ester
pdb|1Y2K|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|1Y2K|B Chain B, Catalytic Domain Of Human Phosphodiesterase 4d In Complex
With 3,5-
Dimethyl-1-(3-Nitro-Phenyl)-1h-Pyrazole-4-Carboxylic
Acid Ethyl Ester
pdb|3IAK|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d (Pde4d)
With Papaverine.
pdb|3K4S|A Chain A, The Structure Of The Catalytic Domain Of Human Pde4d With
4- (3-Butoxy-4-Methoxyphenyl)methyl-2-Imidazolidone
Length = 349
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 62 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 119
Query: 457 IISEI 461
+ +++
Sbjct: 120 VFTDL 124
>pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|B Chain B, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|C Chain C, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|D Chain D, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|E Chain E, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|F Chain F, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|G Chain G, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|H Chain H, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|I Chain I, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|J Chain J, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|K Chain K, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
pdb|1MKD|L Chain L, Crystal Structure Of Pde4d Catalytic Domain And
Zardaverine Complex
Length = 328
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 41 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 98
Query: 457 IISEI 461
+ +++
Sbjct: 99 VFTDL 103
>pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4I|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155871
pdb|3G4K|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4K|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Rolipram
pdb|3G4L|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G4L|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
Roflumilast
pdb|3G58|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
pdb|3G58|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With
D155988PMNPQ
Length = 381
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 50 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 107
Query: 457 IISEI 461
+ +++
Sbjct: 108 VFTDL 112
>pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|B Chain B, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|C Chain C, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
pdb|3IAD|D Chain D, Crystal Structure Of Human Phosphodiesterase 4d With Bound
Allosteric Modulator
Length = 377
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 50 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 107
Query: 457 IISEI 461
+ +++
Sbjct: 108 VFTDL 112
>pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx
pdb|1ZKN|B Chain B, Structure Of Pde4d2-Ibmx
pdb|1ZKN|C Chain C, Structure Of Pde4d2-Ibmx
pdb|1ZKN|D Chain D, Structure Of Pde4d2-Ibmx
Length = 334
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 48 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 105
Query: 457 IISEI 461
+ +++
Sbjct: 106 VFTDL 110
>pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2
Length = 358
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK ++IP L T++L+ H +AY NSL+AA V P L A
Sbjct: 49 FQERDLLKTFQIPADTLATYLLMLEGHYHANVAYH--NSLHAADVAQSTHVLLATPALEA 106
Query: 457 IIS--EIFGLKYYSTLYN 472
+ + EI + S +++
Sbjct: 107 VFTDLEILAALFASAIHD 124
>pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|B Chain B, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|C Chain C, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM0|D Chain D, Crystal Structure Of Pde4d In Complex With L-869298
pdb|2FM5|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|B Chain B, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|C Chain C, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|2FM5|D Chain D, Crystal Structure Of Pde4d2 In Complex With Inhibitor L-
869299
pdb|3SL3|A Chain A, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|B Chain B, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|C Chain C, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL3|D Chain D, Crystal Structure Of The Apo Form Of The Catalytic Domain
Of Pde4d2
pdb|3SL4|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL4|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10d
pdb|3SL6|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL6|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 12c
pdb|3SL8|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
pdb|3SL8|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
Compound 10o
Length = 361
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 48 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 105
Query: 457 IISEI 461
+ +++
Sbjct: 106 VFTDL 110
>pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
pdb|3SL5|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2
Complexed With Compound 10d
Length = 359
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 48 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 105
Query: 457 IISEI 461
+ +++
Sbjct: 106 VFTDL 110
>pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|B Chain B, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|C Chain C, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1Q9M|D Chain D, Three Dimensional Structures Of Pde4d In Complex With
Roliprams And Implication On Inhibitor Selectivity
pdb|1OYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|B Chain B, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|C Chain C, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1OYN|D Chain D, Crystal Structure Of Pde4d2 In Complex With (R,S)-Rolipram
pdb|1PTW|A Chain A, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|B Chain B, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|C Chain C, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|1PTW|D Chain D, The Crystal Structure Of Amp-bound Pde4 Suggests A
Mechanism For Phosphodiesterase Catalysis
pdb|3V9B|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|B Chain B, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|C Chain C, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
pdb|3V9B|D Chain D, Crystal Structure Of The Catalytic Domain Of Pde4d2 With
(S)-N-(3-{1-
[1-(3-Cyclopropylmethoxy-4-Difluoromethoxyphenyl)-2-(1-
Oxypyridin-4- Yl)-Ethyl]-1h-Pyrazl-3-Yl}phenyl)acetamide
Length = 360
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 397 FASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFA 456
F LLK +KIP L T+++ H +AY N+++AA V+ P L A
Sbjct: 48 FQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYH--NNIHAADVVQSTHVLLSTPALEA 105
Query: 457 IISEI 461
+ +++
Sbjct: 106 VFTDL 110
>pdb|4GYT|A Chain A, Crystal Structure Of Lpg0076 Protein From Legionella
Pneumophila
pdb|4GYT|B Chain B, Crystal Structure Of Lpg0076 Protein From Legionella
Pneumophila
Length = 194
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 126 MCLYICIGANSQSFANTGALVTCVKNFPESRGSVLGLLKGF 166
MC Y+C GA+SQ A AL+ K+ +SR ++L + F
Sbjct: 37 MCGYLCAGADSQGEAYIRALLNNKKD-EQSRNALLSMFSVF 76
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 7 GGSCCSLREMKSSSLVGVLTGRWFMVFASLLIMAVAG-----ATYMFGLYSSDIKTSLGY 61
GG + E+K++ +TG W A+ AV G YM+G++ +++ +
Sbjct: 723 GGGYYTYDELKAADKPTKITGNWTASGATHCD-AVTGLGKPFVVYMYGVFMAEVTVDVAT 781
Query: 62 DQSTLNLLSFSKDVG 76
Q+T++ ++ D+G
Sbjct: 782 GQTTVDGMTLMADLG 796
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,205,447
Number of Sequences: 62578
Number of extensions: 514070
Number of successful extensions: 1179
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 22
length of query: 492
length of database: 14,973,337
effective HSP length: 103
effective length of query: 389
effective length of database: 8,527,803
effective search space: 3317315367
effective search space used: 3317315367
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)