Query 039263
Match_columns 492
No_of_seqs 108 out of 654
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:15:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.8 7.7E-19 2.6E-23 181.4 15.3 346 25-465 21-379 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.8 2.3E-19 7.7E-24 185.9 7.8 357 25-476 23-389 (451)
3 2gfp_A EMRD, multidrug resista 99.6 2E-16 6.7E-21 160.6 -0.1 317 45-483 16-340 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.5 3.6E-13 1.2E-17 141.4 20.3 370 49-482 34-435 (491)
5 2cfq_A Lactose permease; trans 99.3 2.8E-13 9.4E-18 140.5 1.6 135 332-473 212-352 (417)
6 2xut_A Proton/peptide symporte 99.2 1.1E-10 3.8E-15 123.6 13.6 140 27-174 13-164 (524)
7 4gc0_A D-xylose-proton symport 99.1 9.3E-11 3.2E-15 122.8 8.4 128 46-173 26-177 (491)
8 1pw4_A Glycerol-3-phosphate tr 98.0 5.6E-06 1.9E-10 84.8 6.5 137 337-480 25-166 (451)
9 4aps_A DI-OR tripeptide H+ sym 97.8 1.5E-05 5E-10 83.1 5.8 128 340-473 13-150 (491)
10 3o7q_A L-fucose-proton symport 97.8 2E-05 6.8E-10 80.5 6.0 114 363-482 49-166 (438)
11 4gc0_A D-xylose-proton symport 97.7 9.9E-05 3.4E-09 76.7 9.1 133 44-178 292-426 (491)
12 2gfp_A EMRD, multidrug resista 97.6 1.9E-05 6.5E-10 79.2 2.8 116 361-482 21-137 (375)
13 2xut_A Proton/peptide symporte 97.5 5.1E-05 1.7E-09 79.8 4.8 123 340-468 12-144 (524)
14 2cfq_A Lactose permease; trans 97.2 6.5E-05 2.2E-09 77.2 0.4 72 335-406 2-74 (417)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.79 E-value=7.7e-19 Score=181.44 Aligned_cols=346 Identities=11% Similarity=0.092 Sum_probs=225.2
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+++|..++......+..|. .+.++.+.|++++++|+|..|++++.....++.. ..++.|.+.||+|+|.++++|.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34556665555556666665 4788899999999999999999998777777765 589999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..++..+.+.. ...+ ++|.+...-++.|.|.+..+++......+++| ++||.+.|+..++.++|..+-..+...+
T Consensus 101 ~~~~~~~~~~~--~~~~--~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEIM--NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--cccc--cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776432 2222 36767777788899999999999999999998 5789999999888888877765544333
Q ss_pred c-CCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHH-------HHHHHHHHHHHHHHHHhhhhcccccCccc
Q 039263 182 Y-GDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFY-------KMLYISLGLAGFLMVVIILQNKYAFKRFE 253 (492)
Q Consensus 182 f-~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~-------~~~~~~~~~~~~l~v~~~~~~~~~~~~~~ 253 (492)
. +..... ... .....+ .+..+.+. ++... ..++...+
T Consensus 177 ~~~~~~~~-------~~~--------~~~~~~----~~~~~~~~~~~~~~w~~~~~--~~~~~~~~-------------- 221 (438)
T 3o7q_A 177 ILSNVPHQ-------SQD--------VLDKMS----PEQLSAYKHSLVLSVQTPYM--IIVAIVLL-------------- 221 (438)
T ss_dssp HHTSSCCC-------CHH--------HHHHSC----HHHHHHHHHHHHHHHHHHHH--HHHHHHHH--------------
T ss_pred Hhcccccc-------ccc--------ccccCC----cchhhhhhhhhhhhHHHHHH--HHHHHHHH--------------
Confidence 2 110000 000 000000 00011111 01110 00000000
Q ss_pred hhhhhHHHHHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccH
Q 039263 254 YVGSASLVLILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTI 333 (492)
Q Consensus 254 ~~~~~~~~~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~ 333 (492)
+..+... .+ .|+... ++++ + +++.+...++
T Consensus 222 -----------~~~~~~~-~~-----------------~p~~~~-~~~~---------~-----------~~~~~~~~~~ 251 (438)
T 3o7q_A 222 -----------VALLIML-TK-----------------FPALQS-DNHS---------D-----------AKQGSFSASL 251 (438)
T ss_dssp -----------HHHHHHH-CC-----------------CCCCTT-TCCC---------C-----------SSTTSHHHHH
T ss_pred -----------HHHHHHH-Hc-----------------CCcccc-cccc---------c-----------ccccchhhhH
Confidence 0000000 00 000000 0000 0 0001113467
Q ss_pred HHHhcchhHHHHHHHHHhhccceeEEecchhHH-Hhhc-CCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCch
Q 039263 334 LQALFSIDMLIIFIATTCGVGGTLTAIDNLGQI-GSSL-GYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRP 411 (492)
Q Consensus 334 ~~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I-~~sl-g~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~ 411 (492)
++.+|++++|...+..++..+....+.+....+ .+.. |.+..+++...++..+.+.+||++.|+++||++||
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~------ 325 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH------ 325 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch------
Confidence 889999999999998888777666666677777 6664 88877788888999999999999999999999554
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCC
Q 039263 412 LLFTFVLLFSCVGHPFIAYGIPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLK 465 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k 465 (492)
..+.+..++..++.+++...+.....+...+.|++++..+....++..|.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (438)
T 3o7q_A 326 KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345555556666655554444344455667889999999999999999999854
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.77 E-value=2.3e-19 Score=185.91 Aligned_cols=357 Identities=12% Similarity=0.055 Sum_probs=223.3
Q ss_pred ccchHHHHHHHHHHHHhhCc-ccccccccHHHHHhhCCChhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHH
Q 039263 25 LTGRWFMVFASLLIMAVAGA-TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIM 102 (492)
Q Consensus 25 ~~~Rw~~l~a~~~i~l~~Gt-~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl 102 (492)
.+.||..+....+..+..+. .+.++.+-+.+.+++ +|..|.+++.....++..+ .++.|.+.||+|+|.++++|.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~ 101 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL 101 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHH
Confidence 45677777777777776665 688899999999999 9999999987766777654 89999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHH
Q 039263 103 NFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAF 181 (492)
Q Consensus 103 ~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~ 181 (492)
..+|..+....... .++ +|.+....++.|.+.+..+.+......+++| ++||++.|+.....++|..+-..+...+
T Consensus 102 ~~~~~~~~~~~~~~-~~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 102 AAAVMLFMGFVPWA-TSS--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHCHHH-HSS--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHhhhhc-ccc--HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998766541100 122 4556666778888889899999999999998 5699999998887777665543322111
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHH
Q 039263 182 YGDNSKALILLIAWLPAAISFVFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLV 261 (492)
Q Consensus 182 f~~~~~~fllfla~~~~~v~~~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~ 261 (492)
. .... +....|. +. ++..++.. .
T Consensus 179 ~--------------------------~~~g-----~w~~~f~----~~---~~~~~~~~-------------------~ 201 (451)
T 1pw4_A 179 M--------------------------AWFN-----DWHAALY----MP---AFCAILVA-------------------L 201 (451)
T ss_dssp H--------------------------HHTC-----CSTTCTH----HH---HHHHHHHH-------------------H
T ss_pred H--------------------------HHhc-----cHHHHHH----HH---HHHHHHHH-------------------H
Confidence 1 0000 0011222 10 00000000 0
Q ss_pred HHHHhhhhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchh
Q 039263 262 LILLFLPIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSID 341 (492)
Q Consensus 262 ~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~ 341 (492)
+ .....+++++..+ .++++ +. ..+.+++. ++..+++....+...++.+|+++
T Consensus 202 ~------~~~~~~~~~~~~~----------~~~~~----~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 202 F------AFAMMRDTPQSCG----------LPPIE----EY-----KNDYPDDY---NEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp H------HHHHCCCSSTTTC----------CCSCT----TT-----CCC----------------CCTHHHHHHTSSCHH
T ss_pred H------HHhhccCCHhhcC----------CCChh----hh-----cccccccc---hhhhhcccccccchHHHHHcCHH
Confidence 0 0000111110000 00000 00 00000000 00000011112333578899999
Q ss_pred HHHHHHHHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHH--hhhcCCCchHHHHHHH
Q 039263 342 MLIIFIATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEIL--LKKYKIPRPLLFTFVL 418 (492)
Q Consensus 342 FWllf~~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~--~~~~~~~R~~~l~i~~ 418 (492)
+|.+.+..++.......+......+.++ +|.++.+.+...++.++++.+|++..|.++||+ ++| . .+.+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----~-~~~~~~ 327 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----G-ATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----h-hHHHHH
Confidence 9999887777655444455556666666 678777778888999999999999999999998 433 2 333333
Q ss_pred HHHH-HHHHHHHhcC--Cc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccccee
Q 039263 419 LFSC-VGHPFIAYGI--PN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAV 476 (492)
Q Consensus 419 ~l~~-~~~ll~~~~~--~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~l 476 (492)
.+.. ++.+++.... .. .+.+...+.|++++..+.....++.|.+..++.|+.+++...
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 389 (451)
T 1pw4_A 328 MTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGL 389 (451)
T ss_dssp HHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHH
Confidence 3333 4444433322 12 345666778999999999999999999999989998888644
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.57 E-value=2e-16 Score=160.56 Aligned_cols=317 Identities=11% Similarity=0.024 Sum_probs=199.0
Q ss_pred ccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 039263 45 TYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQV 123 (492)
Q Consensus 45 ~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~~ 123 (492)
.+.++.+-|++++++|+|+.|.+++.....++.. ..++.|.+.||+|+|.++.++.++..++..+.... .+.
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~~ 88 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SSL 88 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HHH
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------ccH
Confidence 4555666788899999999999998666666665 48999999999999999999999998887765543 235
Q ss_pred HHHHHHHHHhhccccchhhhhhhhhhhhcC-CCCCceeeehhHhhhhhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 039263 124 WQMCLYICIGANSQSFANTGALVTCVKNFP-ESRGSVLGLLKGFVGLSGAILTQLYHAFYGDNSKALILLIAWLPAAISF 202 (492)
Q Consensus 124 ~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP-~~RG~a~Gi~~a~~GLsa~i~s~i~~~~f~~~~~~fllfla~~~~~v~~ 202 (492)
|.+....++.|.+.+..+++......+++| ++|+++.|+.....++|..+-..+... ..
T Consensus 89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-l~------------------- 148 (375)
T 2gfp_A 89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL-LD------------------- 148 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH-SS-------------------
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HH-------------------
Confidence 666667778888888888888889999997 689999999888777765554332221 11
Q ss_pred hhhhccccccccccchhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhhhhhhhhHHhhhhccC
Q 039263 203 VFLRTFRIIKIVRQANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFLPIAIVIKEEISLRKS 282 (492)
Q Consensus 203 ~~~~~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~p~~~~~~~~~~~~~~ 282 (492)
+ ....+..+.+ .++..++.. .+.....||
T Consensus 149 ------~----------~~~~~~~~~~---~~~~~~~~~-------------------------~~~~~~~~~------- 177 (375)
T 2gfp_A 149 ------T----------MWNWRACYLF---LLVLCAGVT-------------------------FSMARWMPE------- 177 (375)
T ss_dssp ------C----------HHHHHHHHHH---HHHHHHHHH-------------------------CCCCCSSCC-------
T ss_pred ------H----------hccHHHHHHH---HHHHHHHHH-------------------------HHHHHHCcc-------
Confidence 1 0011100001 000000000 000000000
Q ss_pred CCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHHHHHhhccceeEEecc
Q 039263 283 KKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFIATTCGVGGTLTAIDN 362 (492)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~~~~~~~g~Gl~~i~n 362 (492)
++++ + + + ++ ++..++++.+|++++|.+.+..++.......+...
T Consensus 178 ---------~~~~----~-~---------~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 178 ---------TRPV----D-A---------P---------RT----RLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp ---------CSTT----T-C---------C---------CC----CTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCC----C-c---------c---------cc----cHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 00 01123468899999999888777654443333344
Q ss_pred hhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH--HHHh---cCCchh
Q 039263 363 LGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP--FIAY---GIPNSL 436 (492)
Q Consensus 363 ~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l--l~~~---~~~~~l 436 (492)
...+.++ +|.++.+.+...++.+++..+|++..|.++||.++ | ....... ....+.. .... .....+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 294 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----L-MWQSVIC-CLLAGLLMWIPDWFGVMNVWTL 294 (375)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----H-HHHHHHH-HHHTSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H-HHHHHHH-HHHHHHHHHHHhhhccccHHHH
Confidence 4444444 56665666777888899999999999999998854 1 1111111 1111111 1111 112234
Q ss_pred HHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHHH
Q 039263 437 YAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGAY 483 (492)
Q Consensus 437 ~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs~ 483 (492)
.+...+.|+++|..+....+.+.|.+. ++.|+..++......+|..
T Consensus 295 ~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~ 340 (375)
T 2gfp_A 295 LVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG 340 (375)
T ss_dssp HHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH
Confidence 567778899999999999999999997 8888888876555444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.52 E-value=3.6e-13 Score=141.40 Aligned_cols=370 Identities=12% Similarity=0.069 Sum_probs=196.6
Q ss_pred ccccHHHHHh-----hCCChhhhhHHHHHhhhhcc-ccccceeeecc-CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 039263 49 GLYSSDIKTS-----LGYDQSTLNLLSFSKDVGGN-VGVLSGLINEI-TPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKP 121 (492)
Q Consensus 49 S~ys~~L~~~-----~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~-~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~ 121 (492)
+...+.++++ +|+|..|.+++.....++.. ..+++|++.|| +|+|.++.+|.++..+|..++. ..++
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-----~~~~- 107 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-----LPFG- 107 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----SCCS-
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----Hhhh-
Confidence 3445556666 99999999998666666665 48899999999 8999999999999988876543 1222
Q ss_pred hhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-C--CCceeeehhHhhhhhHHHHHHHHHHHcC-CChhHHHHHHHHHH
Q 039263 122 QVWQMCLYICIGANSQSFANTGALVTCVKNFPE-S--RGSVLGLLKGFVGLSGAILTQLYHAFYG-DNSKALILLIAWLP 197 (492)
Q Consensus 122 ~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~--RG~a~Gi~~a~~GLsa~i~s~i~~~~f~-~~~~~fllfla~~~ 197 (492)
.+.+...-++.|.|.+...++......++||+ + ||.+.++......+|+.+-..+...+.+ .+-..-++..+ ..
T Consensus 108 -~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~-~~ 185 (491)
T 4aps_A 108 -ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA-IG 185 (491)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HH
T ss_pred -HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HH
Confidence 45566666778888888888888889999984 5 5666666656666666555554444332 12222222222 22
Q ss_pred HHHHHhhhhcc-c-ccccc-----cc---chhhhHHHHHHHHHHHHHHHHHHHhhhhcccccCccchhhhhHHHHHHHhh
Q 039263 198 AAISFVFLRTF-R-IIKIV-----RQ---ANELKIFYKMLYISLGLAGFLMVVIILQNKYAFKRFEYVGSASLVLILLFL 267 (492)
Q Consensus 198 ~~v~~~~~~~i-~-~~~~~-----~~---~~~~~~f~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 267 (492)
.+++++...+. + ..+++ ++ ++..+.++.........++.+... ...+..+.++..... .......
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~ 260 (491)
T 4aps_A 186 MFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVM-NLVGWNSLPAYINLL----TIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHH-HHHSSCCTTHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHH-HhccCcccccchhhh----hHHHHHH
Confidence 22322222222 1 11111 00 111122211000000001111111 111221211111100 0000011
Q ss_pred hhhhhhHHhhhhccCCCCccccCCCCCccccccCCCCCCCCCCccccccccccccCCCCCCCcccHHHHhcchhHHHHHH
Q 039263 268 PIAIVIKEEISLRKSKKPSLEDANSHPELKIVTELPPQQASPSTEAQVCCTENIFMPPDRGEDYTILQALFSIDMLIIFI 347 (492)
Q Consensus 268 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~t~~~~l~t~~FWllf~ 347 (492)
+... ..+.++ +++ ..+ .+.-+...+|.+++
T Consensus 261 ~~~~----~~~~~~----------~~~----------------------------~~~--------~~~~~~~~~~~~~~ 290 (491)
T 4aps_A 261 PVFY----FAWMIS----------SVK----------------------------VTS--------TEHLRVVSYIPLFI 290 (491)
T ss_dssp HHHH----HHHHC----------------------------------------------------------CTTHHHHHH
T ss_pred HHHH----HHHHhh----------ccc----------------------------ccH--------HHHHHHHHHHHHHH
Confidence 1100 000000 000 000 00112222333443
Q ss_pred HHHhhccceeEEecchhHHHhh-cCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHH
Q 039263 348 ATTCGVGGTLTAIDNLGQIGSS-LGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHP 426 (492)
Q Consensus 348 ~~~~~~g~Gl~~i~n~~~I~~s-lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~l 426 (492)
..++....-....+......+. .+.+..+.+...++.++...++..+.|.++||++||+ ..+...+.+..+++.++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~-~~~~~~~~~~~~~~~~~~~ 369 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ-PSSPTKFAVGLMFAGLSFL 369 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccC-CCchHHHHHHHHHHHHHHH
Confidence 2222211111222334444443 4554456677788899999999999999999998764 2334444455556666554
Q ss_pred HHHhc----------CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 427 FIAYG----------IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 427 l~~~~----------~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
++... ....+.+...+.|++.+........++.|.+..++-|+..|+..+...+|.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 370 LMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp TTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 33221 223456677788999999999999999999999999998888655444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.31 E-value=2.8e-13 Score=140.51 Aligned_cols=135 Identities=10% Similarity=0.023 Sum_probs=82.6
Q ss_pred cHHHHhcchhHHHHHHHHHhhccceeEEe-cchhHHHhh-cCC---CCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 332 TILQALFSIDMLIIFIATTCGVGGTLTAI-DNLGQIGSS-LGY---PARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 332 t~~~~l~t~~FWllf~~~~~~~g~Gl~~i-~n~~~I~~s-lg~---~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
+.++.+|++++|.+++..++... ..... .......+. ++. +....+...++..+.+..|++..|+++||++||+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~ 290 (417)
T 2cfq_A 212 LALELFRQPKLWFLSLYVIGVSC-TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH
Confidence 45678999999987765433221 11111 112222222 221 1122244556777889999999999999996543
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCccccccc
Q 039263 407 KIPRPLLFTFVLLFSCVGHPFIAYGIPN-SLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNF 473 (492)
Q Consensus 407 ~~~R~~~l~i~~~l~~~~~ll~~~~~~~-~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~ 473 (492)
.+.+..+++.++.+++...... .+.+...+.+++++.........++|.+..++-|+.+++
T Consensus 291 ------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~ 352 (417)
T 2cfq_A 291 ------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLV 352 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 4444555555554444332222 344445556778877777778899999999888888776
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.19 E-value=1.1e-10 Score=123.57 Aligned_cols=140 Identities=9% Similarity=-0.039 Sum_probs=96.6
Q ss_pred chHHHHHHHHHHHHhhCcccccccccHHHHHhhC------CChhhhhHHHHHhhhhcc-ccccceeeeccC-CcHHHHHH
Q 039263 27 GRWFMVFASLLIMAVAGATYMFGLYSSDIKTSLG------YDQSTLNLLSFSKDVGGN-VGVLSGLINEIT-PPWVVLAI 98 (492)
Q Consensus 27 ~Rw~~l~a~~~i~l~~Gt~Y~fS~ys~~L~~~~~------~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~-Gpr~~~~i 98 (492)
+-|...+...+...+... ..+...+.+++++| +|+.+.+++.....++.. ..+++|++.||+ |+|.++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~ 90 (524)
T 2xut_A 13 QIPYIIASEACERFSFYG--MRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILW 90 (524)
T ss_dssp CCTHHHHHHHHHHHHHHH--HHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 444544444444433222 22334455788899 999999998666666665 478999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeee---hhHhhhhhHHHH
Q 039263 99 GSIMNFFGYFMIWLAVTGRIPKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGL---LKGFVGLSGAIL 174 (492)
Q Consensus 99 G~vl~~~Gy~~~~~~~~g~i~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi---~~a~~GLsa~i~ 174 (492)
+.++..++..++... + .+.|.+....++.|.|.+..+.+......++||+ +||.+.++ ......+|+.+-
T Consensus 91 ~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 91 LSLIYCVGHAFLAIF-----E-HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHT-----S-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-----c-ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887655432 1 1255566666777888888888888889999985 68877666 445555544433
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=9.3e-11 Score=122.81 Aligned_cols=128 Identities=17% Similarity=0.131 Sum_probs=86.8
Q ss_pred ccccccc---HHHHHhhCCC--------hhhhhHHHHHhhhhccc-cccceeeeccCCcHHHHHHHHHHHHHHHHHHHHH
Q 039263 46 YMFGLYS---SDIKTSLGYD--------QSTLNLLSFSKDVGGNV-GVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLA 113 (492)
Q Consensus 46 Y~fS~ys---~~L~~~~~~s--------q~~l~~is~~~~vg~~~-~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~ 113 (492)
|..++++ +.+++.++.+ .++.+++..+..+|..+ +++.|.+.||+|+|.+++++.++..+|-.+....
T Consensus 26 yd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~ 105 (491)
T 4gc0_A 26 YDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWP 105 (491)
T ss_dssp HHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444 5566666432 22344555566677766 6889999999999999999999988886543321
Q ss_pred HhcCC-----------CCchhHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHH
Q 039263 114 VTGRI-----------PKPQVWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAI 173 (492)
Q Consensus 114 ~~g~i-----------~~~~~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i 173 (492)
..+.. .+.+++.+.+.=++.|.|.|..++.+.....++.|. +||...++...+..+|..+
T Consensus 106 ~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~ 177 (491)
T 4gc0_A 106 ELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL 177 (491)
T ss_dssp TTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh
Confidence 11100 012356677777888999999999998999999985 6899888876655444333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.00 E-value=5.6e-06 Score=84.85 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=99.9
Q ss_pred hcchhHHHHHHHHHhhccceeEEecchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHH
Q 039263 337 LFSIDMLIIFIATTCGVGGTLTAIDNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTF 416 (492)
Q Consensus 337 l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i 416 (492)
.+.+.++.+++..++....-.++..-..++.+++ .++.+.+...++..+...++.+.+|.++||++|| ..+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHH
Confidence 3445555555555443332222333455666677 8888888899999999999999999999999654 36666
Q ss_pred HHHHHHHHHHHHHh----c-CCchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhH
Q 039263 417 VLLFSCVGHPFIAY----G-IPNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPV 480 (492)
Q Consensus 417 ~~~l~~~~~ll~~~----~-~~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~ 480 (492)
..++..++.++... . ....+++.-++.|++.|..+....++++|++..|+-++..++...+..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~ 166 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNV 166 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHH
Confidence 77777777766544 3 3446778888999999999999999999999988888877775444333
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.82 E-value=1.5e-05 Score=83.14 Aligned_cols=128 Identities=11% Similarity=0.155 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHhhccceeEEecchhHHHh-h-----cCCCCCccchhhhHHHhhhhhhhcccchhhHH-HhhhcCCCchH
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQIGS-S-----LGYPARSTTTFVSLVSIWNYLGRVVAGFASEI-LLKKYKIPRPL 412 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~I~~-s-----lg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~-~~~~~~~~R~~ 412 (492)
+.+|.++...++....-..+........+ . +|.+..+.+...++..+.+.++++.+|.++|| ++|| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------P 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------H
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------H
Confidence 35677776655543332223333333333 3 78888888889999999999999999999999 7654 4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCC--ccccccc
Q 039263 413 LFTFVLLFSCVGHPFIAYGI-PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKY--YSTLYNF 473 (492)
Q Consensus 413 ~l~i~~~l~~~~~ll~~~~~-~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~--~g~nyg~ 473 (492)
.+.+..++..++.++..... ...+++.-++.|++.|...+..+++++|+|..++ -+..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 150 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSI 150 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehH
Confidence 66666777777766655543 4467778888899999999999999999999877 4444444
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.78 E-value=2e-05 Score=80.51 Aligned_cols=114 Identities=14% Similarity=0.041 Sum_probs=88.7
Q ss_pred hhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHH---HhcC-CchhHH
Q 039263 363 LGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFI---AYGI-PNSLYA 438 (492)
Q Consensus 363 ~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~---~~~~-~~~l~~ 438 (492)
..++.+++|.++.+.+...++..+...++.+.+|.++||++|| ..+.+..++..++.++. ...+ ...+++
T Consensus 49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (438)
T 3o7q_A 49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_dssp HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence 4556678899888889999999999999999999999999655 45666677777776655 3333 335677
Q ss_pred HHHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 439 ASVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 439 ~~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
.-++.|++.|..+...+++++|++..|+-+...++...+..+|.
T Consensus 123 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999998887776666544444443
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.66 E-value=9.9e-05 Score=76.69 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=87.6
Q ss_pred cccccccccHHHHHhhCCChhhhhHHHHHhhhhcc-ccccceeeeccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 039263 44 ATYMFGLYSSDIKTSLGYDQSTLNLLSFSKDVGGN-VGVLSGLINEITPPWVVLAIGSIMNFFGYFMIWLAVTGRIPKPQ 122 (492)
Q Consensus 44 t~Y~fS~ys~~L~~~~~~sq~~l~~is~~~~vg~~-~~~~~G~~~D~~Gpr~~~~iG~vl~~~Gy~~~~~~~~g~i~~~~ 122 (492)
..+....|.+.+.+..+.+..+....+....+... ..++++++.||+|+|...+.+.....++...+......... ..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 370 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAP-GI 370 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCC-HH
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccc-hH
Confidence 35667788999999999888776655444444443 36788999999999999998988888776665544443322 11
Q ss_pred hHHHHHHHHHhhccccchhhhhhhhhhhhcCC-CCCceeeehhHhhhhhHHHHHHHH
Q 039263 123 VWQMCLYICIGANSQSFANTGALVTCVKNFPE-SRGSVLGLLKGFVGLSGAILTQLY 178 (492)
Q Consensus 123 ~~~l~~~~~l~g~g~~~~~~a~l~t~~k~FP~-~RG~a~Gi~~a~~GLsa~i~s~i~ 178 (492)
......+....+.+.++. ..+-....+-||. .|+++.|+..+..-+++.+.+.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~-~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~ 426 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWG-PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426 (491)
T ss_dssp HHHHHHHHHHHHHHTTTT-HHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHhHHH-HHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222233333333333332 2233456688996 599999998877777777765544
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.61 E-value=1.9e-05 Score=79.24 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=87.2
Q ss_pred cchhHHHhhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhcCCCchHHHHHHHHHHHHHHHHHHhc-CCchhHHH
Q 039263 361 DNLGQIGSSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKYKIPRPLLFTFVLLFSCVGHPFIAYG-IPNSLYAA 439 (492)
Q Consensus 361 ~n~~~I~~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~~~~R~~~l~i~~~l~~~~~ll~~~~-~~~~l~~~ 439 (492)
.....+.+++|.++.+.+...++..+.+.++++.+|+++||++||+. +.+..++..++.++.... ....+++.
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~ 94 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV------ILVGMSIFMLATLVAVTTSSLTVLIAA 94 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34556777888888888888999999999999999999999976542 223444444444433322 23456777
Q ss_pred HHHHHhhhcchhhhHHHHHHHhhcCCCcccccccceehhhHHH
Q 039263 440 SVIIGFCFGAQWPLLFAIISEIFGLKYYSTLYNFGAVASPVGA 482 (492)
Q Consensus 440 ~~liG~~~G~~~~~~P~i~se~FG~k~~g~nyg~~~la~~~gs 482 (492)
..+.|++.|......+++++|.+..|+.++..+....+..+|.
T Consensus 95 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 137 (375)
T 2gfp_A 95 SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSP 137 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999998888888655544443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.53 E-value=5.1e-05 Score=79.82 Aligned_cols=123 Identities=18% Similarity=0.234 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHhhccceeEEecchhH-HHhhcC------CCCCccchhhhHHHhhhhhhhcccchhhHHH-hhhcCCCch
Q 039263 340 IDMLIIFIATTCGVGGTLTAIDNLGQ-IGSSLG------YPARSTTTFVSLVSIWNYLGRVVAGFASEIL-LKKYKIPRP 411 (492)
Q Consensus 340 ~~FWllf~~~~~~~g~Gl~~i~n~~~-I~~slg------~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~-~~~~~~~R~ 411 (492)
+.+|.+++..++....-.++...+.. +.+.+| .+..+.+...++..+...++.+.+|.++||+ +||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 45666665554433322222333333 345678 8888888899999999999999999999998 6543
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHhhhcchhhhHHHHHHHhhcCCCcc
Q 039263 412 LLFTFVLLFSCVGHPFIAYGI--PNSLYAASVIIGFCFGAQWPLLFAIISEIFGLKYYS 468 (492)
Q Consensus 412 ~~l~i~~~l~~~~~ll~~~~~--~~~l~~~~~liG~~~G~~~~~~P~i~se~FG~k~~g 468 (492)
.+.+..++..++.++..... ...+++...+.|++.|......+++++|.|..++-+
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~ 144 (524)
T 2xut_A 87 -TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS 144 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH
Confidence 45556666666665554443 335677788889999999999999999999987764
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.18 E-value=6.5e-05 Score=77.20 Aligned_cols=72 Identities=10% Similarity=-0.100 Sum_probs=52.9
Q ss_pred HHhcchhHHHHHHHHHhhccceeEEecchhHHH-hhcCCCCCccchhhhHHHhhhhhhhcccchhhHHHhhhc
Q 039263 335 QALFSIDMLIIFIATTCGVGGTLTAIDNLGQIG-SSLGYPARSTTTFVSLVSIWNYLGRVVAGFASEILLKKY 406 (492)
Q Consensus 335 ~~l~t~~FWllf~~~~~~~g~Gl~~i~n~~~I~-~slg~~~~~~~~~Vsl~Si~N~~GRl~~G~lSD~~~~~~ 406 (492)
.++|+++||.+...+++....-.++..-..... +.+|.++.+.+..++...+.+.+|++.+|.++||++||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~ 74 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK 74 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 368999999888765543322222233344433 347888888899999999999999999999999998754
Done!