BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039265
(708 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 394 bits (1011), Expect = e-109, Method: Compositional matrix adjust.
Identities = 254/650 (39%), Positives = 357/650 (54%), Gaps = 64/650 (9%)
Query: 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF 146
TT S FLG + V + S +++G+LD GI P+ PSF DEG PPP KWKG C+
Sbjct: 1 TTRSWDFLGFP--LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 147 ST---CNNKLIGARTFNI-----EGNVKGTEPPIDVDXXXXXXXXXXXXXFVKNAESLGN 198
S CN K+IGAR+++I G+V G P D + V A G
Sbjct: 59 SNNFRCNRKIIGARSYHIGRPISPGDVNG---PRDTNGHGTHTASTAAGGLVSQANLYGL 115
Query: 199 AKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGS-VPFF 257
GTA G P A +A YKVC+ + C+++D+LA D AI DGVD++S+S+GG + +F
Sbjct: 116 GLGTARGGVPLARIAAYKVCW--NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYF 173
Query: 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNR 317
D+IA+GSF A+++GI S +AGN GP T ++ +PW+L+V AST+DR V ++GN
Sbjct: 174 VDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNG 233
Query: 318 EEFDGESVFQPKDFPQTPLPLVYAGMN------GKPESAFCGNGSLSGIDVKGKVVLCER 371
+ F G S+ F PLV +G + K S FC + S++ +KGK+V+CE
Sbjct: 234 QSFQGVSI---NTFDNQYYPLV-SGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEA 289
Query: 372 GGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINST 431
G F K+ GAA +LM + AD + LP++ + + L YI S
Sbjct: 290 SFGPHEFF-----KSLDGAAGVLMTSNTRDY---ADSYPLPSSVLDPNDLLATLRYIYSI 341
Query: 432 ATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAW--FEPLD 489
+P AT IFK T I N+ AP VVSFSSRGPN A+ ++KPDI GPG+ ILAAW P+
Sbjct: 342 RSPGAT-IFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG 400
Query: 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIV 549
++FNI+SGTSM+CPH++GIA +K+ +P WSPAAIKSALMTTA +N
Sbjct: 401 -GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR----- 454
Query: 550 DETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHR---- 605
P FA G+GHVNP +A PGLVYD DY+ +LCG GY+ + V +
Sbjct: 455 ---FNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSAC 511
Query: 606 ------PVAQLNYPSFSVTLGPAQT----FTRTVTNVGQVYSSYAXXXXXXXXXXXXXKP 655
V LNYPSF +++ P+QT F RT+T+V S+Y P
Sbjct: 512 TSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNP 571
Query: 656 SKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRSPISV 705
+ L F+ + + ++++T S G+ + W + VRSPI++
Sbjct: 572 NVLSFNGLGDRKSFTLTVRGSIKGFV----VSASLVWSDGVHYVRSPITI 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 355 bits (912), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 245/660 (37%), Positives = 351/660 (53%), Gaps = 63/660 (9%)
Query: 87 TTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRC-- 144
TTH+ FL L+ G+W S G+ VI+ +LD GI P+ SF D+GMP P +WKG C
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 145 ----DFSTCNNKLIGARTFNIEGNVKGTEPPI--------DVDXXXXXXXXXXXXXFVKN 192
+ S CN KLIGA FN + +P + D D F K
Sbjct: 61 GTQFNASMCNRKLIGANYFN--KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKG 118
Query: 193 AESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGG 252
G A GTA G+AP A LA+YK F + SDL+A +D A+ DGVD++SIS G
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSF--NEGTFTSDLIAAMDQAVADGVDMISISYGYR 176
Query: 253 SVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATA 312
+P + D+I++ SF A+ KG+ VS +AGN GP +++N +PWIL V + DR+ T
Sbjct: 177 FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTL 236
Query: 313 KLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDV-KGKVVLCER 371
LGN + G S+F + F + P++Y K S LS ++ + +V+C+
Sbjct: 237 TLGNGLKIRGWSLFPARAFVRDS-PVIY----NKTLSDCSSEELLSQVENPENTIVICDD 291
Query: 372 GGGIA---RIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYI 428
G + RI ++K A I ++++P F P+ P V+ G ++ +Y+
Sbjct: 292 NGDFSDQMRIITRARLK-----AAIFISEDPGVFRSATFPN--PGVVVNKKEGKQVINYV 344
Query: 429 NSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPL 488
++ TP ATI F+ T + AP V + S+RGP+ + GI KPDI+ PG+ ILAA + P
Sbjct: 345 KNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAA-YPPN 403
Query: 489 DFNTN------PKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLN 542
F T+ + + + SGTSMA PH +GIAA+LK++HP WSP+AI+SA+MTTAD L+
Sbjct: 404 VFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLD 463
Query: 543 MNGERIVD-ETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGI 601
+ I D + + A +GAGHV+P+RA DPGLVYD P DY+ LC L +++++
Sbjct: 464 NTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKT 523
Query: 602 LVH--------RPVAQLNYPSF--------SVTLGPAQTFTRTVTNVGQVYSSYAXXXXX 645
+ P A LNYPSF + TL Q F RTVTNVG+ ++Y
Sbjct: 524 IARSSASHNCSNPSADLNYPSFIALYSIEGNFTL-LEQKFKRTVTNVGKGAATYKAKLKA 582
Query: 646 XXXXXXXXKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV--SAKYSVRSPI 703
P L F N+K +Y++T G S G ITWV + +SVRSPI
Sbjct: 583 PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV--GSITWVEQNGNHSVRSPI 640
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ FSSRGP + LKP+++ PG I+AA + GT+MA PH++
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAPGTAMATPHVA 366
Query: 513 GIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADI--FAIGAGHVNPSR 570
GIAALL +HP W+P +K+AL+ TAD+ ++P +I A GAG VN +
Sbjct: 367 GIAALLLQAHPSWTPDKVKTALIETADI------------VKPDEIADIAYGAGRVNAYK 414
Query: 571 A 571
A
Sbjct: 415 A 415
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 199 AKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIED----GVDVLSISIGGGSV 254
+ G GMAP A L KV G + SD++ G+D A+++ G+ V+++S+G
Sbjct: 195 SNGKYKGMAPGAKLVGIKV-LNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQS 253
Query: 255 PFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISN--EAPWILTVGA 301
DS++ A G+ V AAGNSGP T+ + A ++TVGA
Sbjct: 254 SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGA 302
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 109/423 (25%), Positives = 173/423 (40%), Gaps = 49/423 (11%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIA 262
G P A L + +V + + + A+ G V+++S G ++ + N D
Sbjct: 121 GAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETK 180
Query: 263 VGSFAAIQKGIFVSCAAGNSGPFNSTIS---NEAPWILTVGASTLDRSIVATAKLGNREE 319
A KG+ + +AGN F + P VG S + A ++
Sbjct: 181 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 240
Query: 320 FDGESVFQPKDFPQTPLPLVYAGM---NGKPESAFCGNGSLSG--IDVKGKVVLCERGGG 374
+ + D +P++ N + A+ G DVKGK+ L ERG
Sbjct: 241 LTETATVKTDDHQAKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIERGD- 299
Query: 375 IARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV--LPATHVSNDAGLKIKSYINSTA 432
I K K AG +++ +++ F I P+V +PA +S GL +K NS
Sbjct: 300 IDFKDKIANAKKAGAVGVLIYDNQDKGFP-IELPNVDQMPAAFISRKDGLLLKD--NSKK 356
Query: 433 TPMATIIFKGT--VIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDF 490
T I F T V+ + + FSS G L + G +KPDI PG IL++
Sbjct: 357 T----ITFNATPKVLPTASDTKLSRFSSWG--LTADGNIKPDIAAPGQDILSSV------ 404
Query: 491 NTNPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAA----IKSALMTTADLLN 542
N K + +SGTSM+ P ++GI LL+ + +P +P+ K LM++A L
Sbjct: 405 -ANNK--YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALY 461
Query: 543 MNGERIVDETLRPADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK-EVGI 601
E+ P GAG V+ +A+ +Y D+ + SDK EV +
Sbjct: 462 DEDEKAY---FSPR---QQGAGAVDAKKAS-AATMYVTDKDNTSSKVHLNNVSDKFEVTV 514
Query: 602 LVH 604
VH
Sbjct: 515 TVH 517
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 109/427 (25%), Positives = 169/427 (39%), Gaps = 57/427 (13%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN--DSIA 262
G P A L + +V + + + AI G V++ S G ++ + N D
Sbjct: 112 GAXPEAQLLLXRVEIVNGLADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETK 171
Query: 263 VGSFAAIQKGIFVSCAAGNSGPFNSTIS---------------NEAPWILTVGASTLDRS 307
A KG+ + +AGN F A LTV + + D+
Sbjct: 172 KAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQ 231
Query: 308 IVATAKLGNREEFDGES-VFQPKDF-PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGK 365
+ T ++ ++ D E V F P YA G E F DVKGK
Sbjct: 232 LTETVRVKTADQQDKEXPVLSTNRFEPNKAYDYAYANR-GTKEDDFK--------DVKGK 282
Query: 366 VVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV-IADPHVLPATHVSNDAGLKI 424
+ L ERG I K + K AG +++ +++ F + + + PA +S GL +
Sbjct: 283 IALIERGD-IDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQXPAAFISRKDGLLL 341
Query: 425 KSYINSTATPMATIIFKGT--VIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILA 482
K P TI F T V+ + + FSS G L + G +KPDI PG IL+
Sbjct: 342 KD------NPQKTITFNATPKVLPTASGTKLSRFSSWG--LTADGNIKPDIAAPGQDILS 393
Query: 483 AWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTA-DLL 541
+ N K + +SGTS + P ++GI LL+ + P S + A +L
Sbjct: 394 SV-------ANNK--YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPSERLDLAKKVL 444
Query: 542 NMNGERIVDETLRPADIFA---IGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDK- 597
+ + DE + F+ GAG V+ +A+ Y D+ + SDK
Sbjct: 445 XSSATALYDEDEKA--YFSPRQQGAGAVDAKKAS-AATXYVTDKDNTSSKVHLNNVSDKF 501
Query: 598 EVGILVH 604
EV + VH
Sbjct: 502 EVTVNVH 508
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 17/86 (19%)
Query: 456 FSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIA 515
FSS GP L D++ PG+SI + T P + +SGTSMA PH++G A
Sbjct: 180 FSSVGPEL--------DVMAPGVSICS---------TLPGGKYGALSGTSMASPHVAGAA 222
Query: 516 ALLKSSHPYWSPAAIKSALMTTADLL 541
AL+ S HP W+ ++S+L TA L
Sbjct: 223 ALILSKHPNWTNTQVRSSLENTATKL 248
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIG 250
GT +AP A L KV G D S ++ G++ AI + +DV+++S+G
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIXS---------TLPGNKYGAYSGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTYL 257
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 179 SFSSVGPEL--------DVMAPGVSICS---------TLPGNKYGAKSGTSMASPHVAGA 221
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 222 AALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSICS---------TLPGNKYGAKSGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 179 SFSSVGPEL--------DVMAPGVSICS---------TLPGNKYGAKSGTSMASPHVAGA 221
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 222 AALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIXS---------TLPGNKYGAYSGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI++ T P + + SGT+MA PH++G
Sbjct: 179 SFSSVGPEL--------DVMAPGVSIVS---------TLPGNKYGAKSGTAMASPHVAGA 221
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 222 AALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI++ T P + + SGT+MA PH++G
Sbjct: 179 SFSSVGPEL--------DVMAPGVSIVS---------TLPGNKYGAKSGTAMASPHVAGA 221
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 222 AALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSICS---------TLPGNKYGAKSGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPCASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 17/86 (19%)
Query: 456 FSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIA 515
FSS GP L D++ PG+SI + T P + +SGT+MA PH++G A
Sbjct: 180 FSSVGPEL--------DVMAPGVSICS---------TLPGGKYGALSGTAMASPHVAGAA 222
Query: 516 ALLKSSHPYWSPAAIKSALMTTADLL 541
AL+ S HP W+ ++S+L TA L
Sbjct: 223 ALILSKHPNWTNTQVRSSLENTATKL 248
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIG 250
GT +AP A L KV G D S ++ G++ AI + +DV+++S+G
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQASWIINGIEWAIANNMDVINMSLG 118
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAKSGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPCASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI ++T P + + SGT MA PH++G
Sbjct: 176 SFSSVGPEL--------DVMAPGVSI---------WSTLPGNKYGAKSGTXMASPHVAGA 218
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 219 AALILSKHPNWTNTQVRSSLENTTTKL 245
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 67 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 116
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLQNTTTKL 257
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLQNTTTKL 257
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTSMA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGT MA PH++G
Sbjct: 179 SFSSVGPEL--------DVMAPGVSICS---------TLPGNKYGAKSGTXMASPHVAGA 221
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 222 AALILSKHPNWTNTQVRSSLENTTTKL 248
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 201 GTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
GT +AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 70 GTVLAVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS G L D++ PG+SI + T P + +GTSMA PH++G
Sbjct: 188 SFSSAGSEL--------DVMAPGVSIQS---------TLPGGTYGAYNGTSMATPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ A ++ L +TA L
Sbjct: 231 AALILSKHPTWTNAQVRDRLESTATYL 257
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESD----LLAGLDAAIEDGVDVLSISIGGGSVPFFNDS 260
G+AP A L KV +D T S ++ G++ AI + +DV+++S+GG P + +
Sbjct: 83 GVAPSASLYAVKV-----LDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTA 134
Query: 261 IAVGSFAAIQKGIFVSCAAGNSGPFNST 288
+ A+ GI V+ AAGN G ST
Sbjct: 135 LKTVVDKAVSSGIVVAAAAGNEGSSGST 162
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGT MA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYSGTXMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGT MA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAKSGTXMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + SGT MA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYSGTXMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPCASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GTSMA PH++G+
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGV 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATGLGNTNLYGSGLVN 263
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GT MA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTXMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GT MA PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTXMASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
G+AP A L KV G D S ++ G++ AI + +DV+++S+GG
Sbjct: 83 GVAPSASLYAVKV-LGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + T P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQS---------TYPGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G + S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPSAELYAVKV-LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG + + + VGA+ + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN---------NRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G + S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPNAELYAVKV-LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG + + + VGA+ + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN---------NRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G + S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPNAELYAVKV-LGASGGGSNSSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG + + + VGA+ + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN---------NRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GTSMA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTSMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G D S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPSAELYAVKV-LGADGRGAISSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG S+IS A + + ++ AT + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGA--SSISYPARYANAM-------AVGATDQNNNRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS G L D++ PG+SI + T P + +GT MA PH++G
Sbjct: 188 SFSSVGSEL--------DVMAPGVSIQS---------TLPGGTYGAYNGTXMATPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ A ++ L +TA L
Sbjct: 231 AALILSKHPTWTNAQVRDRLESTATYL 257
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESD----LLAGLDAAIEDGVDVLSISIGGGSVPFFNDS 260
G+AP A L KV +D T S ++ G++ AI + +DV+++S+GG P + +
Sbjct: 83 GVAPSASLYAVKV-----LDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTA 134
Query: 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTIS----NEAPWILTVGASTLDRSIVATAKLGN 316
+ A+ GI V+ AAGN G ST + + P + VGA + + +G
Sbjct: 135 LKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSVG- 193
Query: 317 REEFDGESVFQPKDFPQTPLP-LVYAGMNG 345
E D V P Q+ LP Y NG
Sbjct: 194 -SELD---VMAPGVSIQSTLPGGTYGAYNG 219
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
DI PG SI ++W+ S N +SGTSMA PH++G+AAL +P SPA +
Sbjct: 198 DIYAPGSSITSSWYTS-------NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVT 250
Query: 532 SALMTTA 538
+ L T A
Sbjct: 251 NLLKTRA 257
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS G L D++ PG+SI + T P + +GT MA PH++G
Sbjct: 188 SFSSAGSEL--------DVMAPGVSIQS---------TLPGGTYGAYNGTCMATPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ A ++ L +TA L
Sbjct: 231 AALILSKHPTWTNAQVRDRLESTATYL 257
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 26/152 (17%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESD----LLAGLDAAIEDGVDVLSISIGGGSVPFFNDS 260
G++P A L KV +D T S ++ G++ AI + +DV+++S+GG P + +
Sbjct: 83 GVSPSASLYAVKV-----LDSTGSGQYSWIINGIEWAISNNMDVINMSLGG---PTGSTA 134
Query: 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTIS----NEAPWILTVGA--STLDRSIVATAKL 314
+ A+ GI V+ AAGN G ST + + P + VGA S+ R+ ++A
Sbjct: 135 LKTVVDKAVSSGIVVAAAAGNEGSSGSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSAG- 193
Query: 315 GNREEFDGESVFQPKDFPQTPLP-LVYAGMNG 345
E D V P Q+ LP Y NG
Sbjct: 194 ---SELD---VMAPGVSIQSTLPGGTYGAYNG 219
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS GP L D++ PG+SI + T P + + +GTS A PH++G
Sbjct: 188 SFSSVGPEL--------DVMAPGVSIQS---------TLPGNKYGAYNGTSXASPHVAGA 230
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S HP W+ ++S+L T L
Sbjct: 231 AALILSKHPNWTNTQVRSSLENTTTKL 257
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + T P S + ++GT MA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQS---------TYPGSTYASLNGTXMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GT MA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTXMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G + S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPNAELYAVKV-LGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG + + + VGA+ + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN---------NRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GT MA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTXMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 20/99 (20%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFS G L DI+ PG+++ + + P S + ++GT MA PH++G
Sbjct: 182 SFSQYGAGL--------DIVAPGVNVQSTY---------PGSTYASLNGTXMATPHVAGA 224
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL---NMNGERIVD 550
AAL+K +P WS I++ L TA L N+ G +V+
Sbjct: 225 AALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVN 263
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 18/146 (12%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264
G+AP A L KV G S + GL+ A +G+ V ++S+G S P AV
Sbjct: 81 GVAPSAELYAVKV-LGASGSGAISSIAQGLEWAGNNGMHVANLSLGSPS-PSATLEQAVN 138
Query: 265 SFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD--- 321
S A +G+ V A+GNSG + + + VGA+ + NR F
Sbjct: 139 S--ATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQNN---------NRASFSQYG 187
Query: 322 -GESVFQPKDFPQTPLP-LVYAGMNG 345
G + P Q+ P YA +NG
Sbjct: 188 AGLDIVAPGVNVQSTYPGSTYASLNG 213
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 172 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 211
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 172 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 211
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 172 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 211
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 172 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 211
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 173 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 212
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 257
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 173 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 212
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GTSMA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 213 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 257
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG SI +AW+ + ++GTSMA PH++G+AAL +P +PA++
Sbjct: 196 DLFAPGASIPSAWYTS-------DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVA 248
Query: 532 SALMTTADLLNMNG 545
SA++ A ++G
Sbjct: 249 SAILNGATTGRLSG 262
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 17/87 (19%)
Query: 455 SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGI 514
SFSS G L +++ PG+S+ ++T P + + ++GTSMA PH++G
Sbjct: 187 SFSSVGSEL--------EVMAPGVSV---------YSTYPSNTYTSLNGTSMASPHVAGA 229
Query: 515 AALLKSSHPYWSPAAIKSALMTTADLL 541
AAL+ S +P S + +++ L +TA L
Sbjct: 230 AALILSKYPTLSASQVRNRLSSTATNL 256
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 96/241 (39%), Gaps = 49/241 (20%)
Query: 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGT 168
G V +GI+D GI H K G F + ++N +GN GT
Sbjct: 23 GANVKVGIIDTGIASSHTDL----------KVVGGASF-------VSGESYNTDGNGHGT 65
Query: 169 EPPIDVDXXXXXXXXXXXXXFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTES 228
V +L N G G+AP L KV + S
Sbjct: 66 HVAGTV-------------------AALDNTTGVL-GVAPNVSLYAIKV-LNSSGSGSYS 104
Query: 229 DLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS- 287
+++G++ A ++G+DV+++S+GG P + ++ A GI V AAGNSG S
Sbjct: 105 AIVSGIEWATQNGLDVINMSLGG---PSGSTALKQAVDKAYASGIVVVAAAGNSGNSGSQ 161
Query: 288 -TISNEAPW--ILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN 344
TI A + ++ VGA +++ + + +G+ E V +P Y +N
Sbjct: 162 NTIGYPAKYDSVIAVGAVDSNKNRASFSSVGSELEVMAPGVSVYSTYPSN----TYTSLN 217
Query: 345 G 345
G
Sbjct: 218 G 218
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 462 NLASPGILKP-------DIIGP--------GLSILAAWFEPLDFNTNPKSIFNIMSGTSM 506
N A PG+ P DI P GL++ A + + + +GTSM
Sbjct: 311 NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSM 370
Query: 507 ACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGE 546
A PH+SG+A L+ S HP S + +++AL TAD L++ G
Sbjct: 371 ATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR 410
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 20/105 (19%)
Query: 437 TIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKS 496
++I G V NS SFSS G L +++ PG + ++T P +
Sbjct: 172 SVIAVGAVDSNS---NRASFSSVGAEL--------EVMAPGAGV---------YSTYPTN 211
Query: 497 IFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541
+ ++GT MA PH++G AAL+ S HP S + +++ L +TA L
Sbjct: 212 TYATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL 256
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG SI ++T P S + +SGTSMA PH++G+A LL S S + I+
Sbjct: 201 DVAAPGSSI---------YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 532 SALMTTADLLNMNG 545
+A+ TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 453 VVSFSSRG-PNLASPGILKP---DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508
V +SSRG + A +++ +I PG S+ + W+ +N +SGTSMA
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY---------NGGYNTISGTSMAT 253
Query: 509 PHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNG 545
PH+SG+AA + + +P S ++S L A +++ G
Sbjct: 254 PHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVD---------VLSISIGGGSVP 255
G+AP A L YKV D SD +A AAI D ++S+S+G +
Sbjct: 92 GVAPDADLWAYKVLL--DSGSGYSDDIA---AAIRHAADQATATGTKTIISMSLGSSA-- 144
Query: 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI 289
N I+ A KG+ + AAGNSG TI
Sbjct: 145 -NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG +W ++T P S + +SGTSMA PH++G+A LL S S + I+
Sbjct: 201 DVAAPG-----SWI----YSTYPTSTYASLSGTSMATPHVAGVAGLLASQGR--SASNIR 249
Query: 532 SALMTTADLLNMNG 545
+A+ TAD ++ G
Sbjct: 250 AAIENTADKISGTG 263
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAW--FEP-LDFNTNPKSIFNIMSGTSMACP 509
V FSSRGP G +KPD++ PG IL+A P F N S + M GTSMA P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYMGGTSMATP 259
Query: 510 HLSGIAALLK 519
++G A L+
Sbjct: 260 IVAGNVAQLR 269
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 13/97 (13%)
Query: 453 VVSFSSRG-PNLASPGILKP---DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508
V +SSRG + A +++ +I PG S+ + W+ +N +SGT MA
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY---------NGGYNTISGTXMAT 253
Query: 509 PHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNG 545
PH+SG+AA + + +P S ++S L A +++ G
Sbjct: 254 PHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKG 290
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 42/94 (44%), Gaps = 17/94 (18%)
Query: 205 GMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVD---------VLSISIGGGSVP 255
G+AP A L YKV D SD +A AAI D ++S+S+G +
Sbjct: 92 GVAPDADLWAYKVLL--DSGSGYSDDIA---AAIRHAADQATATGTKTIISMSLGSSA-- 144
Query: 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI 289
N I+ A KG+ + AAGNSG TI
Sbjct: 145 -NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTI 177
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 453 VVSFSSRGPNLASPG--ILKPD--IIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508
V FSSRG + I K D I PG ++ + WF+ + +SGTSMA
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFD---------GGYATISGTSMAS 252
Query: 509 PHLSGIAALLKSSHPYWSPAAIKSALMTTA---DLLNMN 544
PH +G+AA + + P S ++ L T A D+L+ N
Sbjct: 253 PHAAGLAAKIWAQSPAASNVDVRGELQTRASVNDILSGN 291
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D++ PG+ I++ T + + MSGTSMA PH++G+AALL S + I+
Sbjct: 202 DVVAPGVDIVS---------TITGNRYAYMSGTSMASPHVAGLAALLASQGR--NNIEIR 250
Query: 532 SALMTTADLLNMNG 545
A+ TAD ++ G
Sbjct: 251 QAIEQTADKISGTG 264
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 25/96 (26%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
DI GPG SIL+ W + +SI SGTSMA PH++G+AA
Sbjct: 200 DIFGPGTSILSTWI-----GGSTRSI----SGTSMATPHVAGLAAY-------------- 236
Query: 532 SALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
LMT + R + +T D+ I G VN
Sbjct: 237 --LMTLGKTTAASACRYIADTANKGDLSNIPFGTVN 270
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNP--KSIFNIMSGTSMACPHLSGIAALLKSS----HPYW 525
D+ PG IL+ +D T ++ M+GTSMA PH+SG+AAL+ S+ +
Sbjct: 245 DLAAPGQDILST----VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNL 300
Query: 526 SPAAIKSALMTTADLLNMNGER 547
+PA +K L++T N +R
Sbjct: 301 TPAELKDVLVSTTSPFNGRLDR 322
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 25/96 (26%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
DI GPG SIL+ W + +SI SGTSMA PH++G+AA
Sbjct: 200 DIFGPGTSILSTWI-----GGSTRSI----SGTSMATPHVAGLAAY-------------- 236
Query: 532 SALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
LMT + R + +T D+ I G VN
Sbjct: 237 --LMTLGKTTAASACRYIADTANKGDLSNIPFGTVN 270
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNP--KSIFNIMSGTSMACPHLSGIAALLKSS----HPYW 525
D+ PG IL+ +D T ++ M+GTSMA PH+SG+AAL+ S+ +
Sbjct: 245 DLAAPGQDILST----VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNL 300
Query: 526 SPAAIKSALMTTADLLNMNGER 547
+PA +K L++T N +R
Sbjct: 301 TPAELKDVLVSTTSPFNGRLDR 322
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 10/82 (12%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNP--KSIFNIMSGTSMACPHLSGIAALLKSS----HPYW 525
D+ PG IL+ +D T ++ M+GTSMA PH+SG+AAL+ S+ +
Sbjct: 245 DLAAPGQDILST----VDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNL 300
Query: 526 SPAAIKSALMTTADLLNMNGER 547
+PA +K L++T N +R
Sbjct: 301 TPAELKDVLVSTTSPFNGRLDR 322
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 213 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 253
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 254 GVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 211 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 251
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 252 GVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 222 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 262
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 263 GVVALIQAAY 272
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 291 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 331
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 332 GVVALIQAAY 341
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 291 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 331
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 332 GVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 291 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 331
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 332 GVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 291 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 331
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 332 GVVALIQAAY 341
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 222 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 262
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 263 GVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT+MA PH+S
Sbjct: 288 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTAMATPHVS 328
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 329 GVVALIQAAY 338
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 453 VVSFSSR--GPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPH 510
V FSSR G ++ +PG+ + PG + + ++ GTSMA PH
Sbjct: 328 VAGFSSRSDGVSVGAPGVTILSTV-PGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPH 386
Query: 511 LSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNG 545
++G+ A+L P P I+ L TA N NG
Sbjct: 387 VTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNG 421
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT MA PH+S
Sbjct: 211 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTXMATPHVS 251
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 252 GVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 19/70 (27%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLS 512
+ SFS+R P +++PG+ DI +T P + + GT MA PH+S
Sbjct: 211 IASFSNRQPEVSAPGV---DI----------------LSTYPDDSYETLMGTCMATPHVS 251
Query: 513 GIAALLKSSH 522
G+ AL+++++
Sbjct: 252 GVVALIQAAY 261
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
DI GPG IL+ W + +SI SGTSMA PH++G+AA
Sbjct: 200 DIFGPGTDILSTWI-----GGSTRSI----SGTSMATPHVAGLAAY-------------- 236
Query: 532 SALMTTADLLNMNGERIVDETLRPADIFAIGAGHVN 567
LMT + R + +T D+ I G VN
Sbjct: 237 --LMTLGKTTAASACRYIADTANKGDLSNIPFGTVN 270
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 453 VVSFSSRGPNLASPGILKPDIIGPGLSILAAW--FEP-LDFNTNPKSIFNIMSGTSMACP 509
V FSSRGP G +KPD++ PG IL+A P F N S + GTS A P
Sbjct: 202 VAQFSSRGP--TKDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDSKYAYXGGTSXATP 259
Query: 510 HLSGIAALLK 519
++G A L+
Sbjct: 260 IVAGNVAQLR 269
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIK 531
D+ PG I +AW++ + +SGTSMA PH++G+AAL + +P +
Sbjct: 196 DLFAPGSQIKSAWYD---------GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLT 246
Query: 532 SALMTTA 538
L + A
Sbjct: 247 GLLNSRA 253
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI PG SI + W N +SGTSMA PH++G+AA L
Sbjct: 201 DIFAPGTSITSTWIGGRT---------NTISGTSMATPHIAGLAAYL 238
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 18/126 (14%)
Query: 500 IMSGTSMACPHLSGIAAL----LKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRP 555
+ +GTS A PH++G AL LK + +SP +IK A+ TA L
Sbjct: 457 LXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY------------ 504
Query: 556 ADIFAIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSF 615
D FA G G +N +A + + D+ + + +G ++ + GI + + V Q N +
Sbjct: 505 VDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVG-NNADKGIHLRQGV-QRNSIDY 562
Query: 616 SVTLGP 621
+V + P
Sbjct: 563 NVYIEP 568
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI PG +IL+ W N +SGTSMA PH+ G+ A L
Sbjct: 203 DIFAPGSNILSTWI---------GGTTNTISGTSMATPHIVGLGAYL 240
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 228 SDLLAGLDAAIED--------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAA 279
S +++G+D A++D GV V ++S+GGG ND G+ A I+ G+F++ AA
Sbjct: 108 SGIISGMDFAVQDSKSRSCPKGV-VANMSLGGGKAQSVND----GAAAMIRAGVFLAVAA 162
Query: 280 GNSGPFNSTIS-NEAPWILTVGASTLDRSIVATAKLGN 316
GN + S P + TVGA+T + + + GN
Sbjct: 163 GNDNANAANYSPASEPTVCTVGATTSSDARSSFSNYGN 200
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 495 KSIFNIMSGTSMACPHLSGIAALLKSSH----PYWSPAAIKSALMTTADLLNMNGER 547
+S + + +GTSMA PH+SG+AAL+ S+ +P+ + L+ T N +R
Sbjct: 267 RSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDR 323
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 495 KSIFNIMSGTSMACPHLSGIAALLKSSH----PYWSPAAIKSALMTTADLLNMNGER 547
+S + + +GTSMA PH+SG+AAL+ S+ +P+ + L+ T N +R
Sbjct: 267 RSSYGMKAGTSMAAPHVSGVAALVISAANSIGKTLTPSELSDILVRTTSRFNGRLDR 323
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 75 VSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSD 130
VSA E + ++ +P+ VW+ S G G IIG++D G DHP ++
Sbjct: 15 VSALSEVPMGVEIVEAPA---------VWRASAKGAGQIIGVIDTGCQVDHPDLAE 61
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI+ PG+ I + + + S + +SGT+MA PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD---------SGYAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 75 VSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSD 130
VSA E + ++ +P+ VW+ S G G IIG++D G DHP ++
Sbjct: 15 VSALSEVPMGVEIVEAPA---------VWRASAKGAGQIIGVIDTGCQVDHPDLAE 61
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI+ PG+ I + + + S + +SGT+MA PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD---------SGYAELSGTAMAAPHVAGALALI 263
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 75 VSARPERKVRLQTTHSPSFLGLHQGMGVWKESNFGKGVIIGILDGGINPDHPSFSD 130
VSA E + ++ +P+ VW+ S G G IIG++D G DHP ++
Sbjct: 15 VSALSEVPMGVEIVEAPA---------VWRASAKGAGQIIGVIDTGXQVDHPDLAE 61
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI+ PG+ I + + + S + +SGT+MA PH++G AL+
Sbjct: 226 DIVAPGVGIKSTYLD---------SGYAELSGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 102 VWKESNFGKGVIIGILDGGINPDHPSFSD 130
VW+ S G G IIG++D G DHP ++
Sbjct: 15 VWRASAKGAGQIIGVIDTGCQVDHPDLAE 43
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 472 DIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518
DI+ PG+ I + + + S + +SGT+MA PH++G AL+
Sbjct: 208 DIVAPGVGIKSTYLD---------SGYAELSGTAMAAPHVAGALALI 245
>pdb|2GB3|A Chain A, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|B Chain B, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|C Chain C, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|D Chain D, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|E Chain E, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
pdb|2GB3|F Chain F, Crystal Structure Of Aspartate Aminotransferase (Tm1698)
From Thermotoga Maritima At 2.50 A Resolution
Length = 409
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 21/106 (19%)
Query: 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEP-----NAFSVIADPHVLPAT 414
+DVK + VL GG A +F + N G ++L EP NAF+ IA ++P T
Sbjct: 98 VDVKPENVLVTNGGSEAILFSFAVIANPGDEILVL---EPFYANYNAFAKIAGVKLIPVT 154
Query: 415 HVSNDAGLKI----KSYINSTATPMATIIFKGTVIGNSLAPTVVSF 456
+ G I +S+IN KG V+ N PT V +
Sbjct: 155 R-RXEEGFAIPQNLESFINERT--------KGIVLSNPCNPTGVVY 191
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAW---FEPLDFNTNPKSIFNIMSGTSMAC 508
T FS+ G N GIL PG IL A EP+ ++GTSMA
Sbjct: 252 TPCHFSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR-----------LTGTSMAA 295
Query: 509 PHLSGIAALLKSSHPYW----SPAAIKSALMTTA 538
P ++GI+ALL S A+++AL+ TA
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAW---FEPLDFNTNPKSIFNIMSGTSMAC 508
T FS+ G N GIL PG IL A EP+ ++GTSMA
Sbjct: 252 TPCHFSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR-----------LTGTSMAA 295
Query: 509 PHLSGIAALLKSSHPYW----SPAAIKSALMTTA 538
P ++GI+ALL S A+++AL+ TA
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 23/94 (24%)
Query: 452 TVVSFSSRGPNLASPGILKPDIIGPGLSILAAW---FEPLDFNTNPKSIFNIMSGTSMAC 508
T FS+ G N GIL PG IL A EP+ ++GTSMA
Sbjct: 234 TPCHFSNWGGNNTKEGIL-----APGEEILGAQPCTEEPVR-----------LTGTSMAA 277
Query: 509 PHLSGIAALLKSSHPYW----SPAAIKSALMTTA 538
P ++GI+ALL S A+++AL+ TA
Sbjct: 278 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 311
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 500 IMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTA 538
+M+GTS A P SG ALL S++P S ++ L +A
Sbjct: 331 VMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSA 369
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 454 VSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSG 513
V FS+ G GIL PG IL A P +SGTS A P +SG
Sbjct: 187 VDFSNWGDAYQKQGIL-----APGKDILGA---------KPNGGTIRLSGTSFATPIVSG 232
Query: 514 IAALLKSSHPYW----SPAAIKSALMTTA 538
+AALL S P +K+AL+ +A
Sbjct: 233 VAALLLSLQIKRGEKPDPQKVKNALLASA 261
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 197 GNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPF 256
G + + G+AP I + T+ DL G++ A+ G +++IS GG +
Sbjct: 80 GQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS--GGELTD 137
Query: 257 FNDS---IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGA 301
F ++ + Q + + AAGN+G + P +L VGA
Sbjct: 138 FGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 185
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 337
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 579 DIQPDDYIPYLCGLGYSDKEVGILVHRPVAQLNYPSFSVTLGPAQT 624
DI P D Y GL D E G + R V ++ FS + PA+T
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 204 AGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251
AG A + ++ F G +D DL AGL G+DV ++GG
Sbjct: 181 AGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG 228
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 196 LGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP 255
G + + G+AP I + T+ DL G++ A+ G +++IS GG +
Sbjct: 70 FGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS--GGELT 127
Query: 256 FFNDS---IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGA 301
F ++ + Q + + AAGN+G + P +L VGA
Sbjct: 128 DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 176
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 103 WKESNFGKGVIIGILDGGINPDHPSFS 129
W + G G+++ ILD GI +HP +
Sbjct: 31 WAQGFTGHGIVVSILDDGIEKNHPDLA 57
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 196 LGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP 255
G + + G+AP I + T+ DL G++ A+ G +++IS GG +
Sbjct: 60 FGQPETSVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINIS--GGELT 117
Query: 256 FFNDS---IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGA 301
F ++ + Q + + AAGN+G + P +L VGA
Sbjct: 118 DFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGA 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,580,139
Number of Sequences: 62578
Number of extensions: 941818
Number of successful extensions: 2382
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 265
length of query: 708
length of database: 14,973,337
effective HSP length: 106
effective length of query: 602
effective length of database: 8,340,069
effective search space: 5020721538
effective search space used: 5020721538
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)