Query 039265
Match_columns 708
No_of_seqs 445 out of 2981
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 1.4E-51 3.1E-56 435.9 30.7 291 83-539 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 4.9E-51 1.1E-55 447.7 22.7 299 91-578 293-618 (639)
3 cd05562 Peptidases_S53_like Pe 100.0 5.5E-50 1.2E-54 413.8 25.0 270 106-573 1-274 (275)
4 cd07479 Peptidases_S8_SKI-1_li 100.0 1.9E-49 4E-54 407.0 26.4 243 103-542 1-254 (255)
5 cd07478 Peptidases_S8_CspA-lik 100.0 4.3E-49 9.4E-54 433.6 30.2 398 107-564 1-455 (455)
6 cd07497 Peptidases_S8_14 Pepti 100.0 5.8E-49 1.2E-53 412.1 25.1 286 109-538 1-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 100.0 3.3E-48 7.2E-53 417.9 29.9 311 101-573 1-346 (346)
8 cd07489 Peptidases_S8_5 Peptid 100.0 1.6E-47 3.5E-52 406.1 29.1 289 100-576 3-301 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 5.8E-47 1.2E-51 390.3 26.7 248 102-543 2-254 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 8.4E-46 1.8E-50 390.5 31.1 282 109-571 1-295 (295)
11 cd05561 Peptidases_S8_4 Peptid 100.0 3E-46 6.4E-51 379.8 23.8 236 112-564 1-239 (239)
12 cd07483 Peptidases_S8_Subtilis 100.0 3.5E-45 7.5E-50 383.1 26.1 254 110-539 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 4.1E-45 8.9E-50 377.8 26.1 244 111-539 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 5.7E-45 1.2E-49 377.3 26.5 247 109-539 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 6.9E-46 1.5E-50 379.0 15.0 328 3-539 80-461 (501)
16 cd04857 Peptidases_S8_Tripepti 100.0 6.4E-44 1.4E-48 380.5 29.1 222 172-541 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 5.5E-44 1.2E-48 370.6 27.4 256 109-539 1-264 (264)
18 cd07485 Peptidases_S8_Fervidol 100.0 4E-44 8.7E-49 372.8 26.4 264 101-537 1-273 (273)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 1.9E-43 4E-48 364.4 26.5 232 102-540 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 3.1E-43 6.7E-48 363.9 26.9 241 99-541 18-259 (260)
21 cd07490 Peptidases_S8_6 Peptid 100.0 1.1E-42 2.3E-47 358.8 27.1 253 111-539 1-254 (254)
22 cd04847 Peptidases_S8_Subtilis 100.0 1.9E-43 4E-48 371.3 21.0 261 112-539 1-291 (291)
23 cd07494 Peptidases_S8_10 Pepti 100.0 2.2E-42 4.8E-47 361.6 24.3 252 99-543 10-287 (298)
24 cd04842 Peptidases_S8_Kp43_pro 100.0 3.2E-42 6.9E-47 363.0 25.5 279 105-539 2-293 (293)
25 cd07496 Peptidases_S8_13 Pepti 100.0 4.9E-42 1.1E-46 359.4 26.2 258 111-537 1-285 (285)
26 cd07498 Peptidases_S8_15 Pepti 100.0 6.7E-42 1.4E-46 350.2 25.2 240 112-537 1-242 (242)
27 cd07480 Peptidases_S8_12 Pepti 100.0 9.7E-42 2.1E-46 359.0 25.6 265 104-569 2-296 (297)
28 cd07477 Peptidases_S8_Subtilis 100.0 5.8E-41 1.3E-45 340.4 25.7 226 111-537 1-229 (229)
29 cd07473 Peptidases_S8_Subtilis 100.0 9.5E-41 2E-45 345.3 27.6 249 110-539 2-259 (259)
30 cd04843 Peptidases_S8_11 Pepti 100.0 2.1E-41 4.6E-46 350.2 20.9 244 99-539 4-277 (277)
31 cd07491 Peptidases_S8_7 Peptid 100.0 3.4E-41 7.4E-46 343.1 21.4 155 109-302 2-169 (247)
32 PF00082 Peptidase_S8: Subtila 100.0 1.2E-41 2.6E-46 356.6 16.3 274 113-573 1-282 (282)
33 cd07492 Peptidases_S8_8 Peptid 100.0 9.7E-40 2.1E-44 329.6 24.6 221 111-539 1-222 (222)
34 cd07482 Peptidases_S8_Lantibio 100.0 1.1E-39 2.5E-44 343.7 24.4 247 111-537 1-294 (294)
35 cd04059 Peptidases_S8_Protein_ 100.0 2.2E-40 4.7E-45 349.6 18.3 248 99-539 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 1.2E-38 2.5E-43 331.0 23.1 244 108-539 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 8.3E-37 1.8E-41 320.2 18.1 355 4-573 50-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 2E-34 4.2E-39 292.4 16.3 195 170-537 32-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 9.8E-34 2.1E-38 309.6 21.8 357 175-708 310-689 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 2.9E-31 6.4E-36 270.2 25.4 234 112-537 1-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 5.5E-24 1.2E-28 240.6 21.8 274 99-573 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 4.2E-22 9.2E-27 199.4 7.2 307 99-594 150-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 2.7E-17 5.9E-22 177.3 13.8 99 203-306 83-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 3E-11 6.5E-16 112.7 12.4 118 332-463 24-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 1.7E-10 3.7E-15 105.3 13.6 122 312-437 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 99.1 3.6E-10 7.8E-15 94.8 6.8 80 5-86 1-82 (82)
47 cd02127 PA_hPAP21_like PA_hPAP 98.8 6.2E-08 1.3E-12 86.6 10.5 89 349-439 21-117 (118)
48 cd04816 PA_SaNapH_like PA_SaNa 98.7 5.7E-08 1.2E-12 88.0 9.7 97 335-435 18-119 (122)
49 cd02129 PA_hSPPL_like PA_hSPPL 98.7 9.3E-08 2E-12 84.9 10.7 91 334-430 20-114 (120)
50 cd02122 PA_GRAIL_like PA _GRAI 98.7 7.4E-08 1.6E-12 88.6 10.1 88 349-437 44-137 (138)
51 cd02124 PA_PoS1_like PA_PoS1_l 98.7 2.8E-07 6.1E-12 83.8 13.2 98 336-435 28-126 (129)
52 KOG3525 Subtilisin-like propro 98.7 6.6E-08 1.4E-12 105.5 9.2 291 99-574 22-325 (431)
53 cd04818 PA_subtilisin_1 PA_sub 98.6 3.3E-07 7.1E-12 82.5 10.9 87 348-436 26-116 (118)
54 cd02125 PA_VSR PA_VSR: Proteas 98.6 4.1E-07 8.8E-12 82.5 11.2 88 349-437 22-126 (127)
55 cd02126 PA_EDEM3_like PA_EDEM3 98.6 2.6E-07 5.7E-12 83.9 9.7 86 349-436 27-124 (126)
56 PF02225 PA: PA domain; Inter 98.6 1.1E-07 2.3E-12 83.1 6.7 78 350-428 20-101 (101)
57 cd02130 PA_ScAPY_like PA_ScAPY 98.5 4.3E-07 9.3E-12 82.3 9.7 86 350-437 32-121 (122)
58 cd02132 PA_GO-like PA_GO-like: 98.5 5.1E-07 1.1E-11 83.5 9.8 84 349-436 48-137 (139)
59 PF06280 DUF1034: Fn3-like dom 98.5 1.3E-06 2.8E-11 77.8 11.8 82 622-704 9-112 (112)
60 cd00538 PA PA: Protease-associ 98.5 5.6E-07 1.2E-11 81.9 9.2 86 349-435 30-123 (126)
61 cd04817 PA_VapT_like PA_VapT_l 98.5 8.1E-07 1.7E-11 81.3 9.1 73 357-430 50-133 (139)
62 cd04813 PA_1 PA_1: Protease-as 98.4 1.3E-06 2.8E-11 78.0 9.2 80 348-430 26-111 (117)
63 COG4934 Predicted protease [Po 98.4 2E-06 4.4E-11 101.0 13.1 93 204-301 289-395 (1174)
64 cd02123 PA_C_RZF_like PA_C-RZF 98.4 1.9E-06 4E-11 81.0 9.8 84 349-433 50-142 (153)
65 cd04819 PA_2 PA_2: Protease-as 98.0 5.4E-05 1.2E-09 69.0 10.3 91 333-432 22-121 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.4 0.00053 1.2E-08 63.0 7.8 78 358-436 34-132 (134)
67 PF14874 PapD-like: Flagellar- 96.8 0.035 7.7E-07 48.2 12.8 81 622-707 21-101 (102)
68 cd02128 PA_TfR PA_TfR: Proteas 96.6 0.004 8.7E-08 59.7 6.4 72 359-431 51-156 (183)
69 cd04814 PA_M28_1 PA_M28_1: Pro 96.3 0.016 3.5E-07 53.4 7.8 65 333-400 19-101 (142)
70 KOG2442 Uncharacterized conser 96.2 0.017 3.6E-07 62.1 8.5 83 358-441 90-178 (541)
71 cd04820 PA_M28_1_1 PA_M28_1_1: 96.1 0.015 3.2E-07 53.3 6.7 64 334-400 22-97 (137)
72 cd04822 PA_M28_1_3 PA_M28_1_3: 95.9 0.023 5E-07 53.0 6.8 65 334-400 20-101 (151)
73 cd02121 PA_GCPII_like PA_GCPII 95.6 0.028 6.1E-07 55.8 6.8 56 334-398 45-105 (220)
74 PF10633 NPCBM_assoc: NPCBM-as 94.8 0.17 3.6E-06 41.6 8.1 58 622-680 6-65 (78)
75 cd02131 PA_hNAALADL2_like PA_h 94.3 0.055 1.2E-06 49.9 4.2 40 360-400 37-76 (153)
76 KOG3920 Uncharacterized conser 94.3 0.054 1.2E-06 49.3 4.0 101 335-442 65-175 (193)
77 PF11614 FixG_C: IG-like fold 93.0 2.4 5.2E-05 37.8 12.6 57 622-679 32-88 (118)
78 KOG4628 Predicted E3 ubiquitin 92.0 0.39 8.4E-06 50.6 6.8 80 350-430 63-149 (348)
79 PF06030 DUF916: Bacterial pro 90.8 1.8 3.9E-05 38.9 9.1 69 621-693 27-119 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 89.6 1.9 4.2E-05 40.5 8.5 65 333-399 21-103 (157)
81 COG1470 Predicted membrane pro 87.4 4.6 9.9E-05 44.0 10.5 80 622-703 398-482 (513)
82 PF00345 PapD_N: Pili and flag 85.1 9.4 0.0002 34.1 10.1 68 622-693 15-89 (122)
83 PF00635 Motile_Sperm: MSP (Ma 82.7 8 0.00017 33.6 8.5 54 622-678 19-72 (109)
84 KOG1114 Tripeptidyl peptidase 81.5 1 2.3E-05 52.5 2.7 24 106-129 77-100 (1304)
85 COG1470 Predicted membrane pro 80.8 19 0.00041 39.5 11.6 70 622-694 285-360 (513)
86 TIGR02745 ccoG_rdxA_fixG cytoc 77.6 8.8 0.00019 42.5 8.4 56 622-678 347-402 (434)
87 PF07718 Coatamer_beta_C: Coat 73.0 33 0.00072 31.4 9.4 68 622-693 70-138 (140)
88 smart00635 BID_2 Bacterial Ig- 62.0 24 0.00053 28.9 5.9 41 650-697 4-44 (81)
89 PF07610 DUF1573: Protein of u 56.8 46 0.001 23.9 5.9 44 627-673 2-45 (45)
90 PF00927 Transglut_C: Transglu 54.7 58 0.0012 28.2 7.4 55 622-678 16-79 (107)
91 PF07705 CARDB: CARDB; InterP 50.7 77 0.0017 26.5 7.5 51 622-676 20-72 (101)
92 PF12690 BsuPI: Intracellular 48.9 75 0.0016 26.3 6.7 55 623-678 2-73 (82)
93 PF05506 DUF756: Domain of unk 48.7 70 0.0015 26.7 6.6 47 622-673 19-65 (89)
94 PF08260 Kinin: Insect kinin p 37.8 15 0.00032 16.3 0.4 6 455-460 3-8 (8)
95 PF02845 CUE: CUE domain; Int 35.7 30 0.00065 24.4 2.0 24 515-538 5-28 (42)
96 PRK15019 CsdA-binding activato 31.1 43 0.00092 31.2 2.8 34 498-532 76-109 (147)
97 PF13598 DUF4139: Domain of un 31.0 1.9E+02 0.0041 30.4 8.2 25 622-646 243-267 (317)
98 PLN03080 Probable beta-xylosid 30.6 94 0.002 37.4 6.2 53 622-675 685-744 (779)
99 PF13940 Ldr_toxin: Toxin Ldr, 30.6 44 0.00095 22.4 1.9 13 506-518 14-26 (35)
100 PF08821 CGGC: CGGC domain; I 30.2 2.7E+02 0.0059 24.3 7.5 44 204-251 31-75 (107)
101 PRK15308 putative fimbrial pro 29.6 2.6E+02 0.0056 28.3 8.2 54 622-676 32-101 (234)
102 TIGR03391 FeS_syn_CsdE cystein 29.2 48 0.001 30.5 2.8 35 498-533 71-105 (138)
103 PRK15098 beta-D-glucoside gluc 28.9 1.8E+02 0.0038 35.1 8.2 53 622-677 668-729 (765)
104 TIGR01451 B_ant_repeat conserv 28.8 1.8E+02 0.0038 21.8 5.3 38 621-660 12-50 (53)
105 COG0065 LeuC 3-isopropylmalate 27.8 89 0.0019 33.7 4.7 60 450-518 354-413 (423)
106 PRK09296 cysteine desufuration 26.7 57 0.0012 30.0 2.8 33 499-532 67-99 (138)
107 PF05753 TRAP_beta: Translocon 26.5 4.8E+02 0.01 25.2 9.2 54 622-677 39-99 (181)
108 PF01345 DUF11: Domain of unkn 26.4 1.6E+02 0.0034 23.6 5.1 30 622-651 42-72 (76)
109 PRK15233 putative fimbrial cha 25.1 3.3E+02 0.0072 27.7 8.2 57 622-679 55-114 (246)
110 smart00546 CUE Domain that may 25.0 89 0.0019 22.0 3.0 25 514-538 5-29 (43)
111 COG2166 sufE Cysteine desulfur 24.5 63 0.0014 29.8 2.6 33 499-532 72-104 (144)
112 PF02657 SufE: Fe-S metabolism 23.9 69 0.0015 28.9 2.8 33 500-533 59-91 (125)
113 PF04255 DUF433: Protein of un 23.8 62 0.0013 24.5 2.1 40 496-535 9-54 (56)
114 PF14016 DUF4232: Protein of u 23.6 5.4E+02 0.012 23.0 9.1 81 622-703 19-112 (131)
115 COG1570 XseA Exonuclease VII, 21.9 2.9E+02 0.0062 30.6 7.4 76 204-284 157-237 (440)
116 PF11611 DUF4352: Domain of un 20.7 4.2E+02 0.009 23.0 7.3 58 622-680 37-106 (123)
117 PRK09918 putative fimbrial cha 20.7 3.2E+02 0.007 27.4 7.1 53 622-675 39-94 (230)
118 PF02601 Exonuc_VII_L: Exonucl 20.5 3.5E+02 0.0077 28.5 7.9 73 207-284 39-119 (319)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-51 Score=435.89 Aligned_cols=291 Identities=56% Similarity=0.860 Sum_probs=249.0
Q ss_pred ecccccCCCcccccccCCc--ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC------CCCceeE
Q 039265 83 VRLQTTHSPSFLGLHQGMG--VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS------TCNNKLI 154 (708)
Q Consensus 83 ~~~~~~~s~~~~g~~~~~~--~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~------~~~~kv~ 154 (708)
+++++++++.++++..... +|..+++|+||+|||||||||++||+|.+....+++..|++.|..+ .|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999887554 4778999999999999999999999999998888999999998876 3899999
Q ss_pred eeeecccCCCCC-------CCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCH
Q 039265 155 GARTFNIEGNVK-------GTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTE 227 (708)
Q Consensus 155 g~~~~~~~~~~~-------~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~ 227 (708)
+.++|..+.+.. ....+.|..||||||||||||+...+....+...+.+.||||+|+|+.+|+++.. ..+..
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~-~~~~~ 159 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD-GGCFG 159 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-CCccH
Confidence 999998764321 1456778999999999999999876655556666677999999999999999874 14888
Q ss_pred HHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcc
Q 039265 228 SDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRS 307 (708)
Q Consensus 228 ~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~ 307 (708)
+++++||++|++++++|||||||......+.+.+..+++++.++|++||+||||+|+.....++..||+++||+.+
T Consensus 160 ~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 160 SDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 9999999999999999999999987545566788888889999999999999999988888888999999999840
Q ss_pred eEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHc
Q 039265 308 IVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNA 387 (708)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ 387 (708)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCC
Q 039265 388 GGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPG 467 (708)
Q Consensus 388 ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g 467 (708)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCceeeCCCcEEeeecCCC-CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 468 ILKPDIIGPGLSILAAWFEPL-DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 468 ~~KPDI~APG~~I~sa~~~~~-~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+||||+|||.+|+++++... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 236 -~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 46799999999999986421 122333478999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=4.9e-51 Score=447.66 Aligned_cols=299 Identities=20% Similarity=0.199 Sum_probs=216.4
Q ss_pred Cccccccc--CCcccc--cCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCce---eEeeeecccCC
Q 039265 91 PSFLGLHQ--GMGVWK--ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNK---LIGARTFNIEG 163 (708)
Q Consensus 91 ~~~~g~~~--~~~~~~--~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~k---v~g~~~~~~~~ 163 (708)
..+|+++. +..+|+ .+.+|+||+|||||||||++||+|.++-.... ....|......+++. -..+++|..+
T Consensus 293 ~~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~GrdgiDdD~nG~vdd~~G~nfVd~- 370 (639)
T PTZ00262 293 NLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGRKGIDDDNNGNVDDEYGANFVNN- 370 (639)
T ss_pred ccCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCccccccccCCcccccccccccCC-
Confidence 44577764 445666 46789999999999999999999986421100 000010000000100 1223455543
Q ss_pred CCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCC
Q 039265 164 NVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGV 242 (708)
Q Consensus 164 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~ 242 (708)
...+.|..||||||||||||...+ .. .+.||||+|+|+.+|+++.. + +..+++++||+||+++|+
T Consensus 371 ----~~~P~D~~GHGTHVAGIIAA~gnN-------~~-Gi~GVAP~AkLi~vKVld~~--G~G~~sdI~~AI~yA~~~GA 436 (639)
T PTZ00262 371 ----DGGPMDDNYHGTHVSGIISAIGNN-------NI-GIVGVDKRSKLIICKALDSH--KLGRLGDMFKCFDYCISREA 436 (639)
T ss_pred ----CCCCCCCCCcchHHHHHHhccccC-------CC-ceeeeecccccceEEEecCC--CCccHHHHHHHHHHHHHCCC
Confidence 346789999999999999997422 22 24899999999999999876 5 788999999999999999
Q ss_pred cEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCc--------------ccC----CCCceEEEccccc
Q 039265 243 DVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST--------------ISN----EAPWILTVGASTL 304 (708)
Q Consensus 243 dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~--------------~~~----~~p~vitVga~~~ 304 (708)
+|||||||+.. +...+..++.+|.++|++||+||||+|..... +|+ ..+++|+|||...
T Consensus 437 ~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~ 513 (639)
T PTZ00262 437 HMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIK 513 (639)
T ss_pred CEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccC
Confidence 99999999752 33567788889999999999999999864321 221 2456677766421
Q ss_pred CcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHH
Q 039265 305 DRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQV 384 (708)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~ 384 (708)
+.
T Consensus 514 d~------------------------------------------------------------------------------ 515 (639)
T PTZ00262 514 DK------------------------------------------------------------------------------ 515 (639)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCC
Q 039265 385 KNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLA 464 (708)
Q Consensus 385 ~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 464 (708)
...-.++.||++|.
T Consensus 516 ---------------------------------------------------------------~~~~s~s~~Snyg~--- 529 (639)
T PTZ00262 516 ---------------------------------------------------------------NNQYSLSPNSFYSA--- 529 (639)
T ss_pred ---------------------------------------------------------------CCcccccccccCCC---
Confidence 00002345666652
Q ss_pred CCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccC
Q 039265 465 SPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMN 544 (708)
Q Consensus 465 ~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~ 544 (708)
.++||+|||++|+|+++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.+++..
T Consensus 530 ----~~VDIaAPG~dI~St~p~---------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~ 596 (639)
T PTZ00262 530 ----KYCQLAAPGTNIYSTFPK---------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL 596 (639)
T ss_pred ----CcceEEeCCCCeeeccCC---------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC
Confidence 235999999999999987 7899999999999999999999999999999999999999999876321
Q ss_pred CccccccCCCCCCCCccC-CCCCCcCCCCCCcccc
Q 039265 545 GERIVDETLRPADIFAIG-AGHVNPSRANDPGLVY 578 (708)
Q Consensus 545 ~~~~~~~~~~~~~~~~~G-~G~vn~~~Al~~~l~~ 578 (708)
+..+| +|+||+++||+.++-+
T Consensus 597 -------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -------------CCccccCcEEcHHHHHHHHHhc
Confidence 12333 3899999999866643
No 3
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=5.5e-50 Score=413.81 Aligned_cols=270 Identities=25% Similarity=0.248 Sum_probs=204.8
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHh
Q 039265 106 SNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTA 185 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGii 185 (708)
|++|+||+|||||||||.+||++.+...+ ++.+...+... .....|..+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------~l~~~~~~~~~-----~~~~~d~~gHGT~vAgii 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------DLPGNVNVLGD-----LDGGSGGGDEGRAMLEII 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------CCCcceeeccc-----cCCCCCCCchHHHHHHHH
Confidence 57999999999999999998855432111 11111111111 124567889999999999
Q ss_pred hcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCC-CCCHHHHH
Q 039265 186 AGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPF-FNDSIAVG 264 (708)
Q Consensus 186 ag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~-~~~~~~~a 264 (708)
+ ||||+|+|+.+|+. ...+++++||+||+++|++|||||||....+. ....+..+
T Consensus 59 ~------------------GvAP~a~l~~~~~~------~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~a 114 (275)
T cd05562 59 H------------------DIAPGAELAFHTAG------GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQA 114 (275)
T ss_pred h------------------ccCCCCEEEEEecC------CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHH
Confidence 3 99999999998873 34688999999999999999999999865443 33467788
Q ss_pred HHHHHhc-CceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEec
Q 039265 265 SFAAIQK-GIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAG 342 (708)
Q Consensus 265 ~~~a~~~-Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (708)
+.++.++ |++||+||||+|... ..+++..|++|+|||.+........
T Consensus 115 i~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------------------- 163 (275)
T cd05562 115 VDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFG------------------------------- 163 (275)
T ss_pred HHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccc-------------------------------
Confidence 8888887 999999999999864 3457889999999997433210000
Q ss_pred CCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHH
Q 039265 343 MNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGL 422 (708)
Q Consensus 343 ~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~ 422 (708)
.|. + .
T Consensus 164 --------s~~------------------~---------------------------~---------------------- 168 (275)
T cd05562 164 --------SDP------------------A---------------------------P---------------------- 168 (275)
T ss_pred --------ccc------------------c---------------------------c----------------------
Confidence 000 0 0
Q ss_pred HHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCC-cEEeeecCCCCCCCCCCcceeec
Q 039265 423 KIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGL-SILAAWFEPLDFNTNPKSIFNIM 501 (708)
Q Consensus 423 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~y~~~ 501 (708)
.......+.|+++||+. ++++||||+|||+ ++.++... +.|..+
T Consensus 169 ------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~---------~~~~~~ 213 (275)
T cd05562 169 ------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG---------DGPPNF 213 (275)
T ss_pred ------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC---------Cceeec
Confidence 00011345678889987 5789999999975 44555544 789999
Q ss_pred cchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 502 SGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 502 sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
+|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+||+
T Consensus 214 sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~-----------~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 214 FGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE-----------PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC-----------CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999998742 2456799999999999986
No 4
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.9e-49 Score=407.02 Aligned_cols=243 Identities=31% Similarity=0.481 Sum_probs=199.9
Q ss_pred cccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHH
Q 039265 103 WKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVA 182 (708)
Q Consensus 103 ~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVA 182 (708)
|+++++|+||+|||||||||.+||+|.+. ....+|.. .....|..|||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------~~~~~~~~------~~~~~d~~gHGT~VA 52 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------KERTNWTN------EKTLDDGLGHGTFVA 52 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------ccccccCC------CCCCCCCCCcHHHHH
Confidence 89999999999999999999999999742 01112322 234567889999999
Q ss_pred HHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHH
Q 039265 183 GTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSI 261 (708)
Q Consensus 183 Giiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~ 261 (708)
|||+|+.. .+.||||+|+|+.+|++.+. + ...+.++++|+||++++++|||||||... +...++
T Consensus 53 GiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~--~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~--~~~~~~ 117 (255)
T cd07479 53 GVIASSRE-----------QCLGFAPDAEIYIFRVFTNN--QVSYTSWFLDAFNYAILTKIDVLNLSIGGPD--FMDKPF 117 (255)
T ss_pred HHHHccCC-----------CceeECCCCEEEEEEeecCC--CCchHHHHHHHHHhhhhcCCCEEEeeccCCC--CCCcHH
Confidence 99998741 13799999999999999876 5 56678999999999999999999999753 234566
Q ss_pred HHHHHHHHhcCceEEEecCCCCCCCC--cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEE
Q 039265 262 AVGSFAAIQKGIFVSCAAGNSGPFNS--TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLV 339 (708)
Q Consensus 262 ~~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (708)
..++.++.++|++||+||||+|+... .+++..+++|+|||..
T Consensus 118 ~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------------------ 161 (255)
T cd07479 118 VDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------------------ 161 (255)
T ss_pred HHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------------------
Confidence 66777888999999999999997543 3467788999999842
Q ss_pred EecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHH
Q 039265 340 YAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419 (708)
Q Consensus 340 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 419 (708)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCC----CCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL----ASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
..+.++.|||+|++. ...+++||||+|||.+|+++.+.
T Consensus 162 -----------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~--------- 203 (255)
T cd07479 162 -----------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK--------- 203 (255)
T ss_pred -----------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC---------
Confidence 122678899999652 12578899999999999988765
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCC----CCCHHHHHHHHHccccccc
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHP----YWSPAAIKSALMTTADLLN 542 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p----~~s~~~vk~~L~~TA~~~~ 542 (708)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||++++
T Consensus 204 ~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 7799999999999999999999999998 7899999999999999863
No 5
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=4.3e-49 Score=433.58 Aligned_cols=398 Identities=24% Similarity=0.265 Sum_probs=244.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccCCCCCceeEeeeeccc--------CCCCCCCCCCCCCCCC
Q 039265 107 NFGKGVIIGILDGGINPDHPSFS-DEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI--------EGNVKGTEPPIDVDGH 177 (708)
Q Consensus 107 ~~G~Gv~VaVIDtGid~~Hp~f~-~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~--------~~~~~~~~~~~d~~gH 177 (708)
++|+||+|||||||||+.||+|. .++.+|+...|++....+.......+...+.+ ..+........|+.||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 58999999999999999999999 46788999999998886533333333222221 1111113456789999
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCC---------CCCHHHHHHHHHHHHHC-----CCc
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV---------DCTESDLLAGLDAAIED-----GVD 243 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~---------g~~~~~i~~ai~~a~~~-----g~d 243 (708)
||||||||||+..+ ...+.||||+|+|+.+|++..... .+..++++.||+|+++. .+.
T Consensus 81 GThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~ 152 (455)
T cd07478 81 GTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPL 152 (455)
T ss_pred hHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCe
Confidence 99999999998533 223489999999999999987621 15688999999998874 478
Q ss_pred EEEEccCCCCC-CCCCCHHHHHHHHHHhc-CceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceee
Q 039265 244 VLSISIGGGSV-PFFNDSIAVGSFAAIQK-GIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFD 321 (708)
Q Consensus 244 VIn~S~G~~~~-~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 321 (708)
|||||||.... ....+.++.++..+.++ |++||+||||+|....++.+... .....-..++.++.+..-.
T Consensus 153 VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~--------~~~~~~~ie~~v~~~~~~~ 224 (455)
T cd07478 153 VINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV--------PNGETKTVELNVGEGEKGF 224 (455)
T ss_pred EEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec--------cCCceEEEEEEECCCCcce
Confidence 99999998643 34456777777777765 99999999999987666543100 0000111222333332222
Q ss_pred eeeccCCCCCCCCceeEEEecCCCCC-----------------CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHH
Q 039265 322 GESVFQPKDFPQTPLPLVYAGMNGKP-----------------ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQV 384 (708)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~ 384 (708)
...+|...+ ..-.+.++.+...... ....|.... .+....|.-.+..+- .+
T Consensus 225 ~~eiW~~~~-d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~~---------~~- 292 (455)
T cd07478 225 NLEIWGDFP-DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIRF---------KN- 292 (455)
T ss_pred EEEEecCCC-CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEEc---------cC-
Confidence 222222211 0000111111100000 000010000 000111111111110 00
Q ss_pred HHcCCcEEEEecCCC--CCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEe-----C--CcCCCcccc
Q 039265 385 KNAGGAAMILMNDEP--NAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVI-----G--NSLAPTVVS 455 (708)
Q Consensus 385 ~~~ga~~~i~~~~~~--~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~-----~--~~~~~~~a~ 455 (708)
...+.+.|.+.... ++. -..|+|.-.+...+.. ++ .+++..+++.+++.. + +...+.++.
T Consensus 293 -~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~----f~--~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~ 361 (455)
T cd07478 293 -IKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTR----FL--EPDPYTTLTIPGTARSVITVGAYNQNNNSIAI 361 (455)
T ss_pred -CCccceEEEEEeccCCCce----EEEEecCcCcCCCCCE----ee--cCCCCceEecCCCCCCcEEEEEEeCCCCcccC
Confidence 11122222221111 111 1135554444333221 11 223445566554321 1 123456999
Q ss_pred ccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcC------CCCCHHH
Q 039265 456 FSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSH------PYWSPAA 529 (708)
Q Consensus 456 fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------p~~s~~~ 529 (708)
||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||+||||+|.+ |.|++++
T Consensus 362 ~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~---------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ 430 (455)
T cd07478 362 FSGRGPTR--DGRIKPDIAAPGVNILTASPG---------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEK 430 (455)
T ss_pred ccCCCcCC--CCCcCceEEecCCCEEEeecC---------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHH
Confidence 99999998 689999999999999999986 789999999999999999999999865 5679999
Q ss_pred HHHHHHccccccccCCccccccCCCCCCCCccCCC
Q 039265 530 IKSALMTTADLLNMNGERIVDETLRPADIFAIGAG 564 (708)
Q Consensus 530 vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 564 (708)
||++|++||+++.. ..+++.++|||
T Consensus 431 ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 431 IKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred HHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 99999999998742 24678899998
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-49 Score=412.12 Aligned_cols=286 Identities=30% Similarity=0.286 Sum_probs=190.6
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|||||||||.+||+|.++... .|+..++. ...+....++..+. ...+.|++||||||||||||.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~~d~---~~~~~~g~d~~~~~----~~~~~D~~gHGThvAGiiag~ 69 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLKFDY---KAYLLPGMDKWGGF----YVIMYDFFSHGTSCASVAAGR 69 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----CcccccCc---CCCccCCcCCCCCc----cCCCCCccccchhHHHHHhcc
Confidence 89999999999999999999754211 11111110 00122222222110 134678999999999999998
Q ss_pred cccCCcccCC-CCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHH-------HHHHH--HHCCCcEEEEccCCCCCCCC-
Q 039265 189 FVKNAESLGN-AKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLA-------GLDAA--IEDGVDVLSISIGGGSVPFF- 257 (708)
Q Consensus 189 ~~~~~~~~g~-~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~-------ai~~a--~~~g~dVIn~S~G~~~~~~~- 257 (708)
.....+..++ ....+.||||+|+|+.+|++.... ......+.. +++|. .+++++|||||||.......
T Consensus 70 ~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 70 GKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGD-VIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred CcccccccccccccceeeeCCCCEEEEEEEEecCC-cchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 5432221111 123458999999999999997541 122222222 34443 36799999999997542211
Q ss_pred ----CCHHHHHHHH-HHhcCceEEEecCCCCCCC--CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 258 ----NDSIAVGSFA-AIQKGIFVSCAAGNSGPFN--STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 258 ----~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
.+..+..... +.++|+++|+||||+|+.. ...++.++++|+|||++........
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~------------------- 209 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY------------------- 209 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh-------------------
Confidence 1223333322 2389999999999999764 3456788999999997432110000
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
. .+
T Consensus 210 ------~---------------------------------~~-------------------------------------- 212 (311)
T cd07497 210 ------L---------------------------------FG-------------------------------------- 212 (311)
T ss_pred ------h---------------------------------hc--------------------------------------
Confidence 0 00
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC-
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD- 489 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~- 489 (708)
......+.++.||||||+. ++++||||+|||++|+++.+....
T Consensus 213 ----------------------------------~~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~ 256 (311)
T cd07497 213 ----------------------------------YLPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSG 256 (311)
T ss_pred ----------------------------------cccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCC
Confidence 0001234789999999998 689999999999999998765310
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCC------CCCHHHHHHHHHccc
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHP------YWSPAAIKSALMTTA 538 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~s~~~vk~~L~~TA 538 (708)
........|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 257 ~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 257 GALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 1111224799999999999999999999999886 689999999999997
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.3e-48 Score=417.87 Aligned_cols=311 Identities=28% Similarity=0.360 Sum_probs=234.0
Q ss_pred cccccCC-CCCccEEEEEcCCCCCCCCCCCCCCCCCCCC-----cccccccCC---CCCceeEeeeecccCCCCCCCCCC
Q 039265 101 GVWKESN-FGKGVIIGILDGGINPDHPSFSDEGMPPPPA-----KWKGRCDFS---TCNNKLIGARTFNIEGNVKGTEPP 171 (708)
Q Consensus 101 ~~~~~g~-~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~-----~w~~~~~~~---~~~~kv~g~~~~~~~~~~~~~~~~ 171 (708)
++|+++. +|+||+|||||||||++||+|.+....+... .++..+... +++.+++..++|.++.+.. ...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDI--LDE 78 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCcc--CCC
Confidence 3788877 9999999999999999999998764443211 122222211 5677888888888653211 114
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeC-CCCCCCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFG-GDVDCTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~-~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.+..+|||||||||+|...+.. ....+.||||+|+|+.+|++.. .........+++|++++++.|++|||||||
T Consensus 79 ~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G 153 (346)
T cd07475 79 DDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG 153 (346)
T ss_pred CCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 5789999999999999864321 1234589999999999999974 211377888999999999999999999999
Q ss_pred CCCCC-CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc----------------cCCCCceEEEcccccCcceEEEEE
Q 039265 251 GGSVP-FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI----------------SNEAPWILTVGASTLDRSIVATAK 313 (708)
Q Consensus 251 ~~~~~-~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~ 313 (708)
..... .....+..++.++.++|++||+||||+|...... +...+++|+||+....
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~-------- 225 (346)
T cd07475 154 STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK-------- 225 (346)
T ss_pred cCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc--------
Confidence 86432 4556777888889999999999999998654321 2334555555553100
Q ss_pred cCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEE
Q 039265 314 LGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMI 393 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i 393 (708)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce
Q 039265 394 LMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473 (708)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI 473 (708)
......+.++.||+|||+. .+++||||
T Consensus 226 ---------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi 252 (346)
T cd07475 226 ---------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDI 252 (346)
T ss_pred ---------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeE
Confidence 0012234788999999998 57999999
Q ss_pred eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhc----CCCCCHHH----HHHHHHccccccccCC
Q 039265 474 IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSS----HPYWSPAA----IKSALMTTADLLNMNG 545 (708)
Q Consensus 474 ~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~s~~~----vk~~L~~TA~~~~~~~ 545 (708)
+|||.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+....
T Consensus 253 ~apG~~i~s~~~~---------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~- 322 (346)
T cd07475 253 TAPGGNIYSTVND---------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS- 322 (346)
T ss_pred EeCCCCeEEecCC---------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc-
Confidence 9999999999876 78999999999999999999999997 78899876 788999999853211
Q ss_pred ccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 546 ERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 546 ~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
.....++.+.++|+|+||+.+||+
T Consensus 323 ----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 ----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred ----CCCCccCCccccCcchhcHHHhhC
Confidence 111445677899999999999985
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.6e-47 Score=406.13 Aligned_cols=289 Identities=33% Similarity=0.423 Sum_probs=228.9
Q ss_pred CcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCC----CC-CCCCCCCCC
Q 039265 100 MGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEG----NV-KGTEPPIDV 174 (708)
Q Consensus 100 ~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~----~~-~~~~~~~d~ 174 (708)
+.+|+.+++|+||+|||||+|||++||+|.++-.+ +.++.+.++|.... +. .....+.|.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~ 67 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------GCKVAGGYDFVGDDYDGTNPPVPDDDPMDC 67 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------CceeccccccCCcccccccCCCCCCCCCCC
Confidence 46899999999999999999999999999864211 12233344443221 00 003456677
Q ss_pred CCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCC
Q 039265 175 DGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGS 253 (708)
Q Consensus 175 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 253 (708)
.+|||||||||+|...+ ..+.||||+|+|+.+|++... + .....+++++++|++++++|||||||...
T Consensus 68 ~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 68 QGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS--GSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred CCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC--CCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 99999999999998532 224899999999999999865 4 66777999999999999999999999764
Q ss_pred CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 254 VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
. +....+..++.++.++|+++|+||||+|.... ..++..+++|+||+.+
T Consensus 137 ~-~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~--------------------------- 188 (312)
T cd07489 137 G-WSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD--------------------------- 188 (312)
T ss_pred C-CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec---------------------------
Confidence 3 33467777888889999999999999987643 3356778888888731
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDF 490 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~ 490 (708)
+.||+|||+. +...||||+|||++|+++++...
T Consensus 189 -------------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-- 221 (312)
T cd07489 189 -------------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-- 221 (312)
T ss_pred -------------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC--
Confidence 4578999998 46899999999999999988632
Q ss_pred CCCCCcceeeccchhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcC
Q 039265 491 NTNPKSIFNIMSGTSMACPHLSGIAALLKSSH-PYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPS 569 (708)
Q Consensus 491 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 569 (708)
+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+..... ...++..++|+|+||++
T Consensus 222 -----~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~--~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 222 -----GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL--PDLAPVAQQGAGLVNAY 294 (312)
T ss_pred -----CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc--cCCCCHhhcCcceeeHH
Confidence 469999999999999999999999999 9999999999999999987654321111 11356789999999999
Q ss_pred CCCCCcc
Q 039265 570 RANDPGL 576 (708)
Q Consensus 570 ~Al~~~l 576 (708)
+|++..-
T Consensus 295 ~a~~~~~ 301 (312)
T cd07489 295 KALYATT 301 (312)
T ss_pred HHhcCCc
Confidence 9999643
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=5.8e-47 Score=390.33 Aligned_cols=248 Identities=28% Similarity=0.355 Sum_probs=205.1
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
+|..+++|+||+|||||+|||.+||+|.+..... ...+... .....|..+|||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~--------------------~~~~~~~-----~~~~~~~~gHGT~V 56 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP--------------------LFTYAAA-----ACQDGGASAHGTHV 56 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc--------------------ccCcccc-----CCCCCCCCCcHHHH
Confidence 7999999999999999999999999998642221 0111100 23456778999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCC-CCCCCH
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDS 260 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~ 260 (708)
||||+|+... .+.||||+|+|+.+|++.....++...++++||+||+++|++|||||||.... ......
T Consensus 57 Agii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~ 126 (267)
T cd07476 57 ASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPI 126 (267)
T ss_pred HHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHH
Confidence 9999987421 24799999999999999766223457789999999999999999999997542 234567
Q ss_pred HHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 261 IAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 261 ~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
+..++.++.++|+++|+||||+|.....+++..|++|+||+...
T Consensus 127 l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------ 170 (267)
T cd07476 127 LANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD------------------------------------ 170 (267)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC------------------------------------
Confidence 78888889999999999999999888888888999999998521
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
.+.++.||+||+.. .||||+|||.+|+++.+. +.|..
T Consensus 171 -----------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~---------~~~~~ 207 (267)
T cd07476 171 -----------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALG---------GEVVR 207 (267)
T ss_pred -----------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCC---------CCeEE
Confidence 12456789999864 488999999999999876 78999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCC----CCHHHHHHHHHcccccccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPY----WSPAAIKSALMTTADLLNM 543 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~----~s~~~vk~~L~~TA~~~~~ 543 (708)
++|||||||||||++|||+|.+|. ++|++||++|++||+++..
T Consensus 208 ~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 208 RSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999887 8999999999999999854
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.4e-46 Score=390.55 Aligned_cols=282 Identities=41% Similarity=0.576 Sum_probs=217.7
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC----------CCCCCCCCCCh
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG----------TEPPIDVDGHG 178 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~----------~~~~~d~~gHG 178 (708)
|+||+|||||+|||++||+|.+.. .++.++...++|........ .....|..+||
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HG 65 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHG 65 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------CCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcH
Confidence 899999999999999999998532 12344555556654321110 11245689999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFN 258 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~ 258 (708)
|||||+|+|...+ ...+.|+||+|+|+.+|++.... .+...+++++|+|+++++++|||||||..... ..
T Consensus 66 T~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~~-~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-~~ 135 (295)
T cd07474 66 THVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPGG-SGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-PD 135 (295)
T ss_pred HHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-CC
Confidence 9999999988532 22358999999999999997441 37888999999999999999999999976432 35
Q ss_pred CHHHHHHHHHHhcCceEEEecCCCCCCCCcc--cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCce
Q 039265 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI--SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPL 336 (708)
Q Consensus 259 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (708)
..+..++.++.++|+++|+||||+|...... ++..+++|+||++.....
T Consensus 136 ~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~----------------------------- 186 (295)
T cd07474 136 DPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV----------------------------- 186 (295)
T ss_pred CHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc-----------------------------
Confidence 6777888899999999999999998765443 577899999998631000
Q ss_pred eEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEE
Q 039265 337 PLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHV 416 (708)
Q Consensus 337 ~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i 416 (708)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCC-CCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCC
Q 039265 417 SNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSR-GPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPK 495 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~ 495 (708)
........|+++ |++. ..++||||+|||++|+++++.. .
T Consensus 187 -------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-------~ 226 (295)
T cd07474 187 -------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-------G 226 (295)
T ss_pred -------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-------C
Confidence 001133344454 4544 5789999999999999998753 2
Q ss_pred cceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCC
Q 039265 496 SIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRA 571 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~A 571 (708)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ..+++..+|+|+||+.+|
T Consensus 227 ~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhccCcceeccccC
Confidence 679999999999999999999999999999999999999999998765432 223557999999999987
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-46 Score=379.85 Aligned_cols=236 Identities=30% Similarity=0.394 Sum_probs=194.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|||||||||.+||+|.++.. ..+++. .....|..+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------~~~~~~-------~~~~~~~~~HGT~vAgiia~~~~~ 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------ARLFFA-------GPGAPAPSAHGTAVASLLAGAGAQ 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------ccccCC-------CCCCCCCCCCHHHHHHHHhCCCCC
Confidence 7899999999999999975421 111222 124567899999999999987421
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCC--CCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGD--VDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~--~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
. .|+||+|+|+.+|++.... ..++..++++||+||++.|++|||||||+.. ...+..++.++.
T Consensus 53 ----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~----~~~l~~ai~~a~ 117 (239)
T cd05561 53 ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP----NALLAAAVAAAA 117 (239)
T ss_pred ----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC----CHHHHHHHHHHH
Confidence 1 6999999999999998641 1267788999999999999999999999753 346677778899
Q ss_pred hcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPE 348 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (708)
++|+++|+||||+|... ..+++..+++|+||+.+.
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~-------------------------------------------- 153 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA-------------------------------------------- 153 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC--------------------------------------------
Confidence 99999999999999763 456788899999998421
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYI 428 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 428 (708)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhH
Q 039265 429 NSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMAC 508 (708)
Q Consensus 429 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAa 508 (708)
.+.++.||++|+.. ||+|||.+|+++.+. +.|..++||||||
T Consensus 154 ---------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~---------~~~~~~sGTS~Aa 195 (239)
T cd05561 154 ---------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPG---------GGYRYVSGTSFAA 195 (239)
T ss_pred ---------------------CCCccccCCCCCcc--------eEEccccceecccCC---------CCEEEeCCHHHHH
Confidence 12567899999876 999999999998765 7899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCC
Q 039265 509 PHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAG 564 (708)
Q Consensus 509 P~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G 564 (708)
|||||++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 196 P~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~-----------~~~d~~~G~G 239 (239)
T cd05561 196 PFVTAALALLLQASP-LAPDDARARLAATAKDLGP-----------PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCC-----------CCcCCCcCCC
Confidence 999999999999999 9999999999999998743 3466789998
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=3.5e-45 Score=383.06 Aligned_cols=254 Identities=28% Similarity=0.404 Sum_probs=187.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCC------CCCce--eEeeeecccCCC--------C--------
Q 039265 110 KGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFS------TCNNK--LIGARTFNIEGN--------V-------- 165 (708)
Q Consensus 110 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~------~~~~k--v~g~~~~~~~~~--------~-------- 165 (708)
|+|+|||||||||++||+|++. .|.+..+.. ..|.. -+.+++|....+ .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999864 232221110 00110 123444442110 0
Q ss_pred --CCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCc
Q 039265 166 --KGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVD 243 (708)
Q Consensus 166 --~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~d 243 (708)
.....+.+..+|||||||||+|...+ ..| +.||||+|+|+.+|++... .....++++||+||+++|++
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n-------~~g-~~GvAp~a~i~~~k~~~~g--~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDN-------GIG-IDGVADNVKIMPLRIVPNG--DERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCC-------CCc-eEEECCCCEEEEEEEecCC--CcCHHHHHHHHHHHHHCCCc
Confidence 00223456899999999999988532 222 4899999999999998654 46778899999999999999
Q ss_pred EEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCc---cc--------CCCCceEEEcccccCcceEEEE
Q 039265 244 VLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST---IS--------NEAPWILTVGASTLDRSIVATA 312 (708)
Q Consensus 244 VIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~--------~~~p~vitVga~~~~~~~~~~~ 312 (708)
|||||||..... ....+..++.++.++|+++|+||||+|..... ++ ...+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975322 23456777788899999999999999864321 11 123556666653210
Q ss_pred EcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEE
Q 039265 313 KLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAM 392 (708)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~ 392 (708)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCc
Q 039265 393 ILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPD 472 (708)
Q Consensus 393 i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPD 472 (708)
.....++.||++|+. +||
T Consensus 216 -------------------------------------------------------~~~~~~~~~Sn~G~~-------~vd 233 (291)
T cd07483 216 -------------------------------------------------------YENNLVANFSNYGKK-------NVD 233 (291)
T ss_pred -------------------------------------------------------CCcccccccCCCCCC-------ceE
Confidence 001147889999974 459
Q ss_pred eeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 473 IIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 473 I~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
|+|||.+|+++.+. +.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 234 i~APG~~i~s~~~~---------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 234 VFAPGERIYSTTPD---------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred EEeCCCCeEeccCc---------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 99999999999876 78999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.1e-45 Score=377.84 Aligned_cols=244 Identities=30% Similarity=0.417 Sum_probs=198.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC-CCCCCChHHHHHHhhcCc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP-IDVDGHGTHVAGTAAGAF 189 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~-~d~~gHGThVAGiiag~~ 189 (708)
||+|||||||||++||+|..... ..+.++.+.++|.... ... .|..+|||||||||+|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~--------------~~~~~i~~~~~~~~~~-----~~~~~~~~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL--------------FKNLRILGEYDFVDNS-----NNTNYTDDDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc--------------ccCCceeeeecCccCC-----CCCCCCCCCchhhhheeeeeCC
Confidence 79999999999999999952110 1234677778887642 223 678999999999999874
Q ss_pred ccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC-----------
Q 039265 190 VKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF----------- 257 (708)
Q Consensus 190 ~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~----------- 257 (708)
. +.+.||||+|+|+.+|+....... .....++.|++|+.+.|++|||||||.......
T Consensus 62 ~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~ 131 (261)
T cd07493 62 P----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDG 131 (261)
T ss_pred C----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccc
Confidence 2 235899999999999987643112 345678999999999999999999997642211
Q ss_pred -CCHHHHHHHHHHhcCceEEEecCCCCCC---CCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 258 -NDSIAVGSFAAIQKGIFVSCAAGNSGPF---NSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 258 -~~~~~~a~~~a~~~Gv~vV~AAGN~g~~---~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
...+..++.++.++|+++|+||||+|.. ...+++..+++|+||+..
T Consensus 132 ~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~------------------------------ 181 (261)
T cd07493 132 KTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD------------------------------ 181 (261)
T ss_pred cchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec------------------------------
Confidence 2356778888899999999999999987 356678889999999841
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTN 493 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~ 493 (708)
..+.++.||++||+. ++++||||+|||.+|++....
T Consensus 182 -----------------------------------~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~------- 217 (261)
T cd07493 182 -----------------------------------ANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD------- 217 (261)
T ss_pred -----------------------------------cCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------
Confidence 112577899999987 689999999999999986554
Q ss_pred CCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 494 PKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 494 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 --GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred --CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999999999999999985
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=5.7e-45 Score=377.26 Aligned_cols=247 Identities=33% Similarity=0.417 Sum_probs=195.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|||||+|||++||+|.+. |+.... ..+...+.+.+..+. ...+.|..+|||||||||+|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~-----~~~~~~~~~~d~~~~--~~~~~d~~~HGT~vagii~g~ 65 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG-----GSADHDYNWFDPVGN--TPLPYDDNGHGTHTMGTMVGN 65 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC-----CCcccccccccCCCC--CCCCCCCCCchhhhhhheeec
Confidence 89999999999999999999864 111000 000001111110000 245567899999999999987
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH------------CCCcEEEEccCCCCCCC
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE------------DGVDVLSISIGGGSVPF 256 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~------------~g~dVIn~S~G~~~~~~ 256 (708)
... .+ ..||||+|+|+.+|++... ++...+++++++++++ .+++|||||||....
T Consensus 66 ~~~--------~~-~~GvAp~a~i~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~-- 132 (264)
T cd07481 66 DGD--------GQ-QIGVAPGARWIACRALDRN--GGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG-- 132 (264)
T ss_pred CCC--------CC-ceEECCCCeEEEEEeecCC--CCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC--
Confidence 421 11 2799999999999999877 6788899999999875 789999999998643
Q ss_pred CCCHHHHHHHHHHhcCceEEEecCCCCCCCCc---ccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 257 FNDSIAVGSFAAIQKGIFVSCAAGNSGPFNST---ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 257 ~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
....+..++..+.++|++||+||||++..... +++..+++|+||+.+.
T Consensus 133 ~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~----------------------------- 183 (264)
T cd07481 133 DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR----------------------------- 183 (264)
T ss_pred CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-----------------------------
Confidence 34556666778889999999999999865433 5677889999998521
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTN 493 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~ 493 (708)
.+.++.||++||.. .++.||||+|||.+|+++.+.
T Consensus 184 ------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~------- 218 (264)
T cd07481 184 ------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG------- 218 (264)
T ss_pred ------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------
Confidence 12678899999998 479999999999999999876
Q ss_pred CCcceeeccchhhhHHHHHHHHHHHHhcCCC--CCHHHHHHHHHcccc
Q 039265 494 PKSIFNIMSGTSMACPHLSGIAALLKSSHPY--WSPAAIKSALMTTAD 539 (708)
Q Consensus 494 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--~s~~~vk~~L~~TA~ 539 (708)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 --~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 --GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred --CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999999999999 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-46 Score=379.03 Aligned_cols=328 Identities=30% Similarity=0.434 Sum_probs=257.9
Q ss_pred CceEEEEeCCCCCCCcccchhHHHHHHHhccccccC---CCCC------------CccEEEec--c-eeEEEEEEcCHHH
Q 039265 3 LQTYIVSVQQPEGSDLAESEYVENWHRSFLPYSLES---SDVQ------------QRPFYSYK--N-VISGFAAKLTEEE 64 (708)
Q Consensus 3 ~~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~------------~~v~~~y~--~-~~~g~sv~~~~~~ 64 (708)
.++|||.|++......+ +.|.+|+++..+..... ++.- ..+.+.|. . +|+|..-.++.+-
T Consensus 80 ~~~YiV~f~~~~~q~~~--s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~ 157 (501)
T KOG1153|consen 80 PSRYIVVFKPDASQQKI--SAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGES 157 (501)
T ss_pred ccceEEEeCCCccHHHH--HhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccce
Confidence 57899999966655555 78888877665533221 0111 11344443 3 7899999999999
Q ss_pred HHHHhcCCCeEEEEeceeecccc-----cCCCcccccccCCc-------cc----ccCCCCCccEEEEEcCCCCCCCCCC
Q 039265 65 VQDMKKKNGFVSARPERKVRLQT-----THSPSFLGLHQGMG-------VW----KESNFGKGVIIGILDGGINPDHPSF 128 (708)
Q Consensus 65 i~~L~~~~~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~g~~G~Gv~VaVIDtGid~~Hp~f 128 (708)
+..++..|-++.++++..+.... .+....|||.++.. .| .+-..|+||...|+||||+..||+|
T Consensus 158 v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dF 237 (501)
T KOG1153|consen 158 VCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDF 237 (501)
T ss_pred eeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccc
Confidence 99999999999999988776644 33444577655321 12 1233799999999999999999999
Q ss_pred CCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecC
Q 039265 129 SDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAP 208 (708)
Q Consensus 129 ~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP 208 (708)
.++ +.| |+ .+.. .....|++||||||||+|+++. .|||.
T Consensus 238 egR------a~w--------------Ga-~i~~------~~~~~D~nGHGTH~AG~I~sKt--------------~GvAK 276 (501)
T KOG1153|consen 238 EGR------AIW--------------GA-TIPP------KDGDEDCNGHGTHVAGLIGSKT--------------FGVAK 276 (501)
T ss_pred ccc------eec--------------cc-ccCC------CCcccccCCCcceeeeeeeccc--------------ccccc
Confidence 976 334 11 1111 2356789999999999999985 79999
Q ss_pred CCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC---------CCcEEEEccCCCCCCCCCCHHHHHHHHHHhcCceEEEe
Q 039265 209 YAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED---------GVDVLSISIGGGSVPFFNDSIAVGSFAAIQKGIFVSCA 278 (708)
Q Consensus 209 ~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~Gv~vV~A 278 (708)
+++|+++||+.++ | +..+++++++|++++. +..|.|||+|+..+ -++..|+.+|.+.|+++++|
T Consensus 277 ~s~lvaVKVl~~d--GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~AV~~A~~~Gi~fa~A 350 (501)
T KOG1153|consen 277 NSNLVAVKVLRSD--GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMAVNAASERGIHFAVA 350 (501)
T ss_pred ccceEEEEEeccC--CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHHHHHHhhcCeEEEEc
Confidence 9999999999998 7 8999999999999986 47899999999743 46777888999999999999
Q ss_pred cCCCCCCCCcc-cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCC
Q 039265 279 AGNSGPFNSTI-SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSL 357 (708)
Q Consensus 279 AGN~g~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 357 (708)
|||+..+.+.+ |+.+..+|||||++.
T Consensus 351 AGNe~eDAC~~SPass~~aITVGAst~----------------------------------------------------- 377 (501)
T KOG1153|consen 351 AGNEHEDACNSSPASSKKAITVGASTK----------------------------------------------------- 377 (501)
T ss_pred CCCcchhhhccCcccccccEEeccccc-----------------------------------------------------
Confidence 99999887655 688999999999732
Q ss_pred CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHH
Q 039265 438 IIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAAL 517 (708)
Q Consensus 438 i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 517 (708)
.+.+|.||+||+|. ||.|||.+|+|+|.+.. ....++||||||+|||||++|.
T Consensus 378 ------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-------~at~ilSGTSMasPhvaG~aAy 430 (501)
T KOG1153|consen 378 ------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-------NATAILSGTSMASPHVAGLAAY 430 (501)
T ss_pred ------------ccchhhhcCcccee--------eeecCchhhhhhhhcCc-------cchheeecccccCcchhhhHHH
Confidence 23789999999999 99999999999998743 5778999999999999999999
Q ss_pred HHhcCCC---------CCHHHHHHHHHcccc
Q 039265 518 LKSSHPY---------WSPAAIKSALMTTAD 539 (708)
Q Consensus 518 l~q~~p~---------~s~~~vk~~L~~TA~ 539 (708)
.++.+|. .+|.++|..++.-..
T Consensus 431 ~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 431 FLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 9999883 378888887776544
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=6.4e-44 Score=380.46 Aligned_cols=222 Identities=30% Similarity=0.354 Sum_probs=166.5
Q ss_pred CCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccC
Q 039265 172 IDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIG 250 (708)
Q Consensus 172 ~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G 250 (708)
.|+.+|||||||||||+..+ ...+.||||+|+|+.+|+++..... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 47789999999999998422 2235899999999999998654211 23457999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHH-HHhcCceEEEecCCCCCCCCcc--cC-CCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 251 GGSVPFFNDSIAVGSFA-AIQKGIFVSCAAGNSGPFNSTI--SN-EAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~g~~~~~~--~~-~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
..........+..++.+ +.++|+++|+||||+|+...+. ++ ..+++|+|||.......... |
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~--------------y 319 (412)
T cd04857 254 EATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE--------------Y 319 (412)
T ss_pred cCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------c
Confidence 86432222233444444 3469999999999999876654 33 57899999996321110000 0
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
.
T Consensus 320 -------------------------~------------------------------------------------------ 320 (412)
T cd04857 320 -------------------------S------------------------------------------------------ 320 (412)
T ss_pred -------------------------c------------------------------------------------------
Confidence 0
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecC
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFE 486 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~ 486 (708)
......+.++.||||||+. +|++||||+|||++|.+.-..
T Consensus 321 --------------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~ 360 (412)
T cd04857 321 --------------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNW 360 (412)
T ss_pred --------------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccC
Confidence 0001123688999999998 799999999999999875221
Q ss_pred CCCCCCCCCcceeeccchhhhHHHHHHHHHHHHh----cCCCCCHHHHHHHHHcccccc
Q 039265 487 PLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLL 541 (708)
Q Consensus 487 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~ 541 (708)
. ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 361 ~-------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 361 T-------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred C-------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 1 16789999999999999999999975 578999999999999999864
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.5e-44 Score=370.64 Aligned_cols=256 Identities=36% Similarity=0.527 Sum_probs=204.4
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..+|||||||||+|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------~~~~~~~~--~~~~~~~d~~~HGT~vAgiiag~ 57 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------FADFVNTV--NGRTTPYDDNGHGTHVAGIIAGS 57 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------cccccccc--cCCCCCCCCCCchHHHHHHHhcC
Confidence 89999999999999999999865221 11111100 00345667889999999999998
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC----CCcEEEEccCCCCC-CCCCCHHH
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED----GVDVLSISIGGGSV-PFFNDSIA 262 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S~G~~~~-~~~~~~~~ 262 (708)
.... .+.+.||||+|+|+.+|+++.. + ....++++||+|+++. +++|||||||.... ......+.
T Consensus 58 ~~~~-------~~~~~Giap~a~i~~~~v~~~~--~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~ 128 (264)
T cd07487 58 GRAS-------NGKYKGVAPGANLVGVKVLDDS--GSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLC 128 (264)
T ss_pred Cccc-------CCceEEECCCCeEEEEEeecCC--CCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHH
Confidence 5321 2335899999999999999876 5 6778899999999998 99999999998643 44567888
Q ss_pred HHHHHHHhcCceEEEecCCCCCCCC--cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 263 VGSFAAIQKGIFVSCAAGNSGPFNS--TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 263 ~a~~~a~~~Gv~vV~AAGN~g~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
.++.++.++|+++|+||||++.... ..++..+++|+||+...+..
T Consensus 129 ~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~--------------------------------- 175 (264)
T cd07487 129 QAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP--------------------------------- 175 (264)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC---------------------------------
Confidence 8888999999999999999998775 55778899999998632110
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
....++.||++||+. ++++||||+|||.+|++..+..........+.|..
T Consensus 176 ----------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~ 225 (264)
T cd07487 176 ----------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE 225 (264)
T ss_pred ----------------------------CCccccccccCCCCC--CCCcCCCEEccccceEeccccccccCCCCCCceEe
Confidence 001578899999998 68999999999999999755322112223378999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 226 ~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 226 MSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999985
No 18
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4e-44 Score=372.81 Aligned_cols=264 Identities=27% Similarity=0.370 Sum_probs=201.7
Q ss_pred cccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHH
Q 039265 101 GVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTH 180 (708)
Q Consensus 101 ~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGTh 180 (708)
++|..+++|+||+|+|||||||++||+|.+..... .++ .....+.+..... .......|..|||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~---~~~----------~~~~~~~~~~~~~-~~~~~~~~~~gHGT~ 66 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD---GYD----------PAVNGYNFVPNVG-DIDNDVSVGGGHGTH 66 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC---Ccc----------cccCCcccccccC-CcCCCCCCCCCCHHH
Confidence 37999999999999999999999999999751110 000 0000111110000 002345678899999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCH
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDS 260 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~ 260 (708)
|||||+|...+....-|. ..+.|+||+|+|+.+|++.... .....+++++|+||++.|++|||||||......+...
T Consensus 67 VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~~-~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~ 143 (273)
T cd07485 67 VAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGRY-YVGDDAVAAAIVYAADNGAVILQNSWGGTGGGIYSPL 143 (273)
T ss_pred HHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCCC-CccHHHHHHHHHHHHHcCCcEEEecCCCCCccccCHH
Confidence 999999875332211111 1235699999999999998751 2677889999999999999999999998754445566
Q ss_pred HHHHHHHHHhc-------CceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCC
Q 039265 261 IAVGSFAAIQK-------GIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQ 333 (708)
Q Consensus 261 ~~~a~~~a~~~-------Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (708)
+..++..+.++ |+++|+||||++.....+++..+++|+||+.+.
T Consensus 144 ~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~----------------------------- 194 (273)
T cd07485 144 LKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT----------------------------- 194 (273)
T ss_pred HHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-----------------------------
Confidence 77777788888 999999999999888777888899999998521
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccce
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPA 413 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~ 413 (708)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCC-cEEeeecCCCCCCC
Q 039265 414 THVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGL-SILAAWFEPLDFNT 492 (708)
Q Consensus 414 ~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~-~I~sa~~~~~~~~~ 492 (708)
.+.++.||++|+.. ||+|||. .|+++.+... .
T Consensus 195 ------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~---~ 227 (273)
T cd07485 195 ------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLD---G 227 (273)
T ss_pred ------------------------------------CCCcCccccCCCce--------EEEeCCCCcccccccccc---C
Confidence 12567899999876 9999999 9998876521 1
Q ss_pred CCCcceeeccchhhhHHHHHHHHHHHHhcCCC-CCHHHHHHHHHcc
Q 039265 493 NPKSIFNIMSGTSMACPHLSGIAALLKSSHPY-WSPAAIKSALMTT 537 (708)
Q Consensus 493 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~s~~~vk~~L~~T 537 (708)
...+.|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 228 ~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 12267999999999999999999999999999 9999999999986
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=1.9e-43 Score=364.44 Aligned_cols=232 Identities=38% Similarity=0.536 Sum_probs=196.8
Q ss_pred ccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHH
Q 039265 102 VWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHV 181 (708)
Q Consensus 102 ~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThV 181 (708)
+|..+++|+||+|||||+||+++||+|.++ +...++|... ....|..+|||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------~~~~~~~~~~------~~~~d~~~HGT~v 69 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------AIWGADFVGG------DPDSDCNGHGTHV 69 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------eeeeeecCCC------CCCCCCCccHHHH
Confidence 677889999999999999999999999754 2223344432 2367889999999
Q ss_pred HHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHC-----CCcEEEEccCCCCCC
Q 039265 182 AGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIED-----GVDVLSISIGGGSVP 255 (708)
Q Consensus 182 AGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~-----g~dVIn~S~G~~~~~ 255 (708)
||||+|.. .||||+|+|+.+|+++.. + ...++++++++|+++. +++|||||||...
T Consensus 70 Agiia~~~--------------~GvAp~a~i~~~~i~~~~--~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-- 131 (255)
T cd04077 70 AGTVGGKT--------------YGVAKKANLVAVKVLDCN--GSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-- 131 (255)
T ss_pred HHHHHccc--------------cCcCCCCeEEEEEEeCCC--CCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--
Confidence 99999863 699999999999999876 4 6778899999999987 4899999999864
Q ss_pred CCCCHHHHHHHHHHhcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCC
Q 039265 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQT 334 (708)
Q Consensus 256 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (708)
...+..++.++.++|+++|+||||+|... ..+++..+++|+||+.+.
T Consensus 132 --~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------------------ 179 (255)
T cd04077 132 --STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------------------ 179 (255)
T ss_pred --CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------------------
Confidence 45677777889999999999999999776 455788899999998521
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceE
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPAT 414 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~ 414 (708)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCC
Q 039265 415 HVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNP 494 (708)
Q Consensus 415 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~ 494 (708)
.+.++.||++||.. ||+|||.+|.++.....
T Consensus 180 -----------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~~------ 210 (255)
T cd04077 180 -----------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGSD------ 210 (255)
T ss_pred -----------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCCC------
Confidence 12467899999987 99999999999886422
Q ss_pred CcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccc
Q 039265 495 KSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADL 540 (708)
Q Consensus 495 ~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~ 540 (708)
+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 211 -~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 211 -TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred -CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 789999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=3.1e-43 Score=363.93 Aligned_cols=241 Identities=34% Similarity=0.492 Sum_probs=203.7
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|..+ +|+||+|||||+||+++||+|... ++...+++... ...+.|..+||
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------~~~~~~~~~~~-----~~~~~d~~~HG 71 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------KFVLGYDFVDN-----DSDAMDDNGHG 71 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------CcccceeccCC-----CCCCCCCCCcH
Confidence 45689988 999999999999999999998432 22333444433 23466789999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCC
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFF 257 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~ 257 (708)
|||||||++..... ..+.|+||+|+|+.+|+++.. + +...+++++|+++++.+++|||||||... .
T Consensus 72 T~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~---~ 138 (260)
T cd07484 72 THVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDAN--GSGSLADIANGIRYAADKGAKVINLSLGGGL---G 138 (260)
T ss_pred HHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHCCCeEEEecCCCCC---C
Confidence 99999999874221 224899999999999999875 4 67888999999999999999999999863 4
Q ss_pred CCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCcee
Q 039265 258 NDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLP 337 (708)
Q Consensus 258 ~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (708)
...+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 139 ~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------- 185 (260)
T cd07484 139 STALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------------------- 185 (260)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------------------
Confidence 45677777888899999999999999988889999999999998521
Q ss_pred EEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEc
Q 039265 338 LVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVS 417 (708)
Q Consensus 338 ~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~ 417 (708)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcc
Q 039265 418 NDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSI 497 (708)
Q Consensus 418 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 497 (708)
.+.++.||++|+.. |++|||.+|+++.+. +.
T Consensus 186 --------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~---------~~ 216 (260)
T cd07484 186 --------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD---------GD 216 (260)
T ss_pred --------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC---------CC
Confidence 12567889999876 999999999998876 78
Q ss_pred eeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccc
Q 039265 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLL 541 (708)
Q Consensus 498 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~ 541 (708)
|..++|||||||+|||++|||++++| +++++||++|++||+++
T Consensus 217 ~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 217 YAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred EEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999999999 99999999999999875
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=358.75 Aligned_cols=253 Identities=34% Similarity=0.487 Sum_probs=189.3
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||+|||++||+|.+.- ....+|....... .....|..+|||||||||+|+..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------~~~~~~~~~~~~~-~~~~~d~~~HGT~vAgiia~~~~ 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------AQWADFDENRRIS-ATEVFDAGGHGTHVSGTIGGGGA 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------CCceeccCCCCCC-CCCCCCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999997541 1122232110000 34556788999999999999853
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHh
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQ 270 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~ 270 (708)
++.+.||||+|+|+.+|++... ++...+++++|+|+++.+++|||||||..... ...+..++....+
T Consensus 59 ---------~~~~~GvAp~a~i~~~~v~~~~--~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~--~~~~~~~~~~~~~ 125 (254)
T cd07490 59 ---------KGVYIGVAPEADLLHGKVLDDG--GGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS--EDPLEEAVEALSN 125 (254)
T ss_pred ---------CCCEEEECCCCEEEEEEEecCC--CCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC--CcHHHHHHHHHHH
Confidence 2234799999999999999877 67889999999999999999999999986433 4556555555554
Q ss_pred -cCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 271 -KGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 271 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
+|++||+||||+|.....+++..+++|+||+.+....... +.
T Consensus 126 ~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~-----------------------------~s-------- 168 (254)
T cd07490 126 QTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW-----------------------------FS-------- 168 (254)
T ss_pred cCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC-----------------------------cc--------
Confidence 6999999999999888888889999999999643221000 00
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
.++
T Consensus 169 --------------------~~g--------------------------------------------------------- 171 (254)
T cd07490 169 --------------------SFG--------------------------------------------------------- 171 (254)
T ss_pred --------------------CCc---------------------------------------------------------
Confidence 000
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.......+.+|... ....|||++|||.+|+++... ....+.|..++|||||||
T Consensus 172 ---------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~-----~~~~~~~~~~~GTS~AaP 224 (254)
T cd07490 172 ---------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQG-----ANGDGQYTRLSGTSMAAP 224 (254)
T ss_pred ---------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccC-----CCCCCCeeecccHHHHHH
Confidence 01112233344332 357899999999999985422 112378999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+|||++|||+|++|+|++++||++|++||+
T Consensus 225 ~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 225 HVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999984
No 22
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-43 Score=371.27 Aligned_cols=261 Identities=25% Similarity=0.235 Sum_probs=187.2
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
.+|||||||||.+||+|.+.- .....+... .....|..||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------~~~~~~~~~-----~~~~~d~~gHGT~vAgiia~~~~~ 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------AEDDLDSDE-----PGWTADDLGHGTAVAGLALYGDLT 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------ccccccccC-----CCCcCCCCCChHHHHHHHHcCccc
Confidence 379999999999999998541 111112211 112578999999999999976422
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCC---CCCCHHHHHHHHHHHHHCC---CcEEEEccCCCCCCCC--CCHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGD---VDCTESDLLAGLDAAIEDG---VDVLSISIGGGSVPFF--NDSIAV 263 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~---~g~~~~~i~~ai~~a~~~g---~dVIn~S~G~~~~~~~--~~~~~~ 263 (708)
.....|+||+++|+.+|++.... ......++++||+|+++++ ++|||||||....... ...+..
T Consensus 55 --------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~ 126 (291)
T cd04847 55 --------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA 126 (291)
T ss_pred --------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence 11237999999999999998761 1256678999999999864 4999999998643211 124444
Q ss_pred HHHH-HHhcCceEEEecCCCCCCCCc------------ccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCC
Q 039265 264 GSFA-AIQKGIFVSCAAGNSGPFNST------------ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKD 330 (708)
Q Consensus 264 a~~~-a~~~Gv~vV~AAGN~g~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
++.+ +.++|++||+||||++..... .++.++++|+|||.+........ +.
T Consensus 127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~------------s~----- 189 (291)
T cd04847 127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR------------AR----- 189 (291)
T ss_pred HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc------------cc-----
Confidence 4433 458999999999999987643 35667899999997443210000 00
Q ss_pred CCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcc
Q 039265 331 FPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHV 410 (708)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~ 410 (708)
.+
T Consensus 190 ----------------------------------------~~-------------------------------------- 191 (291)
T cd04847 190 ----------------------------------------YS-------------------------------------- 191 (291)
T ss_pred ----------------------------------------cc--------------------------------------
Confidence 00
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCC--
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPL-- 488 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~-- 488 (708)
.......+.||||||.. ++.+||||+|||++|.+..+...
T Consensus 192 ------------------------------------~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 192 ------------------------------------AVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred ------------------------------------ccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCcc
Confidence 00001233499999998 68999999999999987543210
Q ss_pred -------CCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 489 -------DFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 489 -------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
.........|..++|||||||||||+||||+|++|+++|++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 011223478999999999999999999999999999999999999999985
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-42 Score=361.63 Aligned_cols=252 Identities=25% Similarity=0.334 Sum_probs=184.2
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCCh
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHG 178 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHG 178 (708)
+..+|+++++|+||+||||||||+..|| |..+++. + + ..+..+. .....|+.|||
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------~----~~~~~~~----~~~~~D~~gHG 64 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------R----VVLAPGA----TDPACDENGHG 64 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------e----eecCCCC----CCCCCCCCCcc
Confidence 4569999999999999999999999888 6543221 0 0 0111110 23456788999
Q ss_pred HHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---
Q 039265 179 THVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP--- 255 (708)
Q Consensus 179 ThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~--- 255 (708)
|||||++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||.....
T Consensus 65 T~vag~i------------------~GvAP~a~i~~vkv~~~-----~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~~~~ 121 (298)
T cd07494 65 TGESANL------------------FAIAPGAQFIGVKLGGP-----DLVNSVGAFKKAISLSPDIISNSWGYDLRSPGT 121 (298)
T ss_pred hheeece------------------eEeCCCCeEEEEEccCC-----CcHHHHHHHHHHHhcCCCEEEeecccCCCCccc
Confidence 9999865 69999999999999853 346789999999999999999999975321
Q ss_pred -------CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCC
Q 039265 256 -------FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQP 328 (708)
Q Consensus 256 -------~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (708)
.....+..++.+|.++|++||+||||++. .+|+..|++|+||++..+.. +..
T Consensus 122 ~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~--------- 180 (298)
T cd07494 122 SWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR--------- 180 (298)
T ss_pred ccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc---------
Confidence 12345778888899999999999999874 57899999999999632210 000
Q ss_pred CCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCC
Q 039265 329 KDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADP 408 (708)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~ 408 (708)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce---------------
Q 039265 409 HVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI--------------- 473 (708)
Q Consensus 409 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI--------------- 473 (708)
......+.|+|. . .+++.|||+
T Consensus 181 ---------------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~ 217 (298)
T cd07494 181 ---------------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLML 217 (298)
T ss_pred ---------------------------------------cccccccCcccc--c--CCCCccCccccccCcCCccccccc
Confidence 000001111111 1 145677776
Q ss_pred -eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccccccc
Q 039265 474 -IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNM 543 (708)
Q Consensus 474 -~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~ 543 (708)
+|||..|.++..... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 218 ~~APG~~i~~~~~~~~-~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 218 PVPPGSQLDRSCAAFP-DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred ccCCCcceeccccCCC-CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 479999976543210 011123789999999999999999999999999999999999999999997743
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=3.2e-42 Score=362.97 Aligned_cols=279 Identities=30% Similarity=0.342 Sum_probs=201.5
Q ss_pred cCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHH
Q 039265 105 ESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGT 184 (708)
Q Consensus 105 ~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGi 184 (708)
++++|+||+|||||+|||++||+|.+.... ... ...+++.....+.. ...|..+||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~--------~~~--~~~~~~~~~~~~~~--------~~~d~~~HGT~vAgi 63 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--------KTN--LFHRKIVRYDSLSD--------TKDDVDGHGTHVAGI 63 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC--------cCc--cCcccEEEeeccCC--------CCCCCCCCcchhhee
Confidence 588999999999999999999999754210 000 12334444433332 223889999999999
Q ss_pred hhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHH
Q 039265 185 AAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVG 264 (708)
Q Consensus 185 iag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a 264 (708)
|+|....... ...+.|+||+|+|+.+|++..........++..+++++.+.+++|||||||...... ......+
T Consensus 64 ia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~ 137 (293)
T cd04842 64 IAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNG-YTLLARA 137 (293)
T ss_pred eccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCccc-cchHHHH
Confidence 9998633211 013489999999999999887611155667889999999999999999999875321 2233334
Q ss_pred HHHHH-h-cCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEE
Q 039265 265 SFAAI-Q-KGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLV 339 (708)
Q Consensus 265 ~~~a~-~-~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (708)
+.++. + +|+++|+||||+|.... ..++..+++|+|||++......
T Consensus 138 ~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------------ 187 (293)
T cd04842 138 YDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------------ 187 (293)
T ss_pred HHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc------------------------------
Confidence 43333 3 89999999999998765 6678899999999974332100
Q ss_pred EecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHH
Q 039265 340 YAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSND 419 (708)
Q Consensus 340 ~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~ 419 (708)
...|..
T Consensus 188 ---------~~~~~~----------------------------------------------------------------- 193 (293)
T cd04842 188 ---------GEGGLG----------------------------------------------------------------- 193 (293)
T ss_pred ---------cccccc-----------------------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCccee
Q 039265 420 AGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFN 499 (708)
Q Consensus 420 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~ 499 (708)
.....+.++.||++||+. ++++||||+|||++|+++.+............|.
T Consensus 194 --------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~~~~~~~~~~~~ 245 (293)
T cd04842 194 --------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYT 245 (293)
T ss_pred --------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCCCCCCCChhhee
Confidence 001223789999999998 6899999999999999987442111122236899
Q ss_pred eccchhhhHHHHHHHHHHHHhcCC--------CCCHHHHHHHHHcccc
Q 039265 500 IMSGTSMACPHLSGIAALLKSSHP--------YWSPAAIKSALMTTAD 539 (708)
Q Consensus 500 ~~sGTSmAaP~VAG~aALl~q~~p--------~~s~~~vk~~L~~TA~ 539 (708)
.++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 246 ~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 246 SKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 999999999999999999999854 6667799999999985
No 25
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.9e-42 Score=359.43 Aligned_cols=258 Identities=28% Similarity=0.351 Sum_probs=189.6
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccC-----C-CCCceeEeeeecccCC-CC--CC-CCCCCCCCCChHH
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDF-----S-TCNNKLIGARTFNIEG-NV--KG-TEPPIDVDGHGTH 180 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-----~-~~~~kv~g~~~~~~~~-~~--~~-~~~~~d~~gHGTh 180 (708)
||+|||||||||++||+|.++... .|+-.... + ....+.....++..+. .. .. .....+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHH
Confidence 799999999999999999865311 11100000 0 0000000000000000 00 00 2334567899999
Q ss_pred HHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH----------HCCCcEEEEccC
Q 039265 181 VAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI----------EDGVDVLSISIG 250 (708)
Q Consensus 181 VAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~----------~~g~dVIn~S~G 250 (708)
|||||+|...+. . .+.||||+|+|+.+|+++.. +...+++++|++|++ .++++|||||||
T Consensus 77 vAgiiaa~~~~~-------~-~~~GvAp~a~i~~~~v~~~~--~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G 146 (285)
T cd07496 77 VAGTIAAVTNNG-------V-GVAGVAWGARILPVRVLGKC--GGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLG 146 (285)
T ss_pred HHHHHhCcCCCC-------C-CceeecCCCeEEEEEEecCC--CCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCC
Confidence 999999985321 1 23799999999999999877 668889999999998 457899999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCceEEEecCCCCCCC-CcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 251 GGSVPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFN-STISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 251 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
..... ...+..++.++.++|++||+||||++... ..+++..+++|+||+.+.
T Consensus 147 ~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------------------- 199 (285)
T cd07496 147 GDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------------------- 199 (285)
T ss_pred CCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------------------
Confidence 86432 45677788889999999999999999876 667888899999998521
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
.+.++.||++|+.. ||+|||++|.++......
T Consensus 200 ----------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~ 231 (285)
T cd07496 200 ----------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGY 231 (285)
T ss_pred ----------------------------------------CCCcccccCCCCCC--------CEEeCCCCccccCCCCcc
Confidence 12678899999987 999999999988754210
Q ss_pred ------CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 490 ------FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 490 ------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 232 PDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 112223578999999999999999999999999999999999999976
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=6.7e-42 Score=350.18 Aligned_cols=240 Identities=31% Similarity=0.427 Sum_probs=190.7
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|||||+|||++||+|.+.. ++...+++... ..+..|..+|||||||||+|+..+
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------~~~~~~~~~~~-----~~~~~~~~~HGT~vAgiiag~~~~ 56 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------KLVPGWNFVSN-----NDPTSDIDGHGTACAGVAAAVGNN 56 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------CccCCccccCC-----CCCCCCCCCCHHHHHHHHHhccCC
Confidence 689999999999999998630 01111222221 224567899999999999987522
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCC-CCCCCHHHHHHHHHHh
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSV-PFFNDSIAVGSFAAIQ 270 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~-~~~~~~~~~a~~~a~~ 270 (708)
...+.|+||+|+|+.+|++.... .+...++.++++|+++.+++|||||||.... ......+..++.++.+
T Consensus 57 --------~~~~~Gvap~a~i~~~~~~~~~~-~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~ 127 (242)
T cd07498 57 --------GLGVAGVAPGAKLMPVRIADSLG-YAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRN 127 (242)
T ss_pred --------CceeEeECCCCEEEEEEEECCCC-CccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhh
Confidence 12248999999999999997661 2678889999999999999999999997643 2345667777778888
Q ss_pred -cCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 271 -KGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 271 -~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
+|+++|+||||+|.....+++..+++|+||+.+.
T Consensus 128 ~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------------------- 162 (242)
T cd07498 128 GKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------------------------- 162 (242)
T ss_pred cCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------------------------
Confidence 9999999999999887778889999999998521
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.+.++.||++||.. |++|||.++.+.........+...+.|..++|||||||
T Consensus 163 --------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap 214 (242)
T cd07498 163 --------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASP 214 (242)
T ss_pred --------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCccccccccCCCCceEeeCcHHHHHH
Confidence 12567899999987 99999999988743321111223378899999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
+|||++|||+|++|+|+++|||++|++|
T Consensus 215 ~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 215 VAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999976
No 27
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.7e-42 Score=358.98 Aligned_cols=265 Identities=29% Similarity=0.387 Sum_probs=185.5
Q ss_pred ccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHH
Q 039265 104 KESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAG 183 (708)
Q Consensus 104 ~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAG 183 (708)
..+++|+||+|||||+|||.+||+|.+... ...+|... ....|..+|||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------~~~~~~~~------~~~~d~~gHGT~VAg 54 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------TTKSFVGG------EDVQDGHGHGTHCAG 54 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------cCcccCCC------CCCCCCCCcHHHHHH
Confidence 357899999999999999999999986421 12334332 235678999999999
Q ss_pred HhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC--------
Q 039265 184 TAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP-------- 255 (708)
Q Consensus 184 iiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~-------- 255 (708)
||+|+... +...||||+|+|+.+|++.... .....++++||+||++.|++|||||||.....
T Consensus 55 iiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~-~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 124 (297)
T cd07480 55 TIFGRDVP---------GPRYGVARGAEIALIGKVLGDG-GGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPP 124 (297)
T ss_pred HHhcccCC---------CcccccCCCCEEEEEEEEeCCC-CCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCC
Confidence 99987532 2237999999999999997651 36677799999999999999999999975311
Q ss_pred --CCCCHHHHHHHHH---------------HhcCceEEEecCCCCCCCCccc-----CCCCceEEEcccccCcceEEEEE
Q 039265 256 --FFNDSIAVGSFAA---------------IQKGIFVSCAAGNSGPFNSTIS-----NEAPWILTVGASTLDRSIVATAK 313 (708)
Q Consensus 256 --~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~g~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~ 313 (708)
.....+......+ .++|++||+||||++....... ...++.++|++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~--------- 195 (297)
T cd07480 125 GLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGA--------- 195 (297)
T ss_pred CchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECC---------
Confidence 1112233222233 6799999999999986543221 11122233322100
Q ss_pred cCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEE
Q 039265 314 LGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMI 393 (708)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i 393 (708)
T Consensus 196 -------------------------------------------------------------------------------- 195 (297)
T cd07480 196 -------------------------------------------------------------------------------- 195 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCce
Q 039265 394 LMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDI 473 (708)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI 473 (708)
.+....|+++.+. ...||||
T Consensus 196 --------------------------------------------------------~~~~~~~~~~~~~----~~~~~dv 215 (297)
T cd07480 196 --------------------------------------------------------LGRTGNFSAVANF----SNGEVDI 215 (297)
T ss_pred --------------------------------------------------------CCCCCCccccCCC----CCCceEE
Confidence 0112223333322 2457899
Q ss_pred eeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCC
Q 039265 474 IGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETL 553 (708)
Q Consensus 474 ~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~ 553 (708)
+|||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+......... .. .
T Consensus 216 ~ApG~~i~s~~~~---------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~-~~-----~ 280 (297)
T cd07480 216 AAPGVDIVSAAPG---------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTT-QF-----A 280 (297)
T ss_pred EeCCCCeEeecCC---------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccC-CC-----C
Confidence 9999999999876 7899999999999999999999999999999988888877432221000 00 1
Q ss_pred CCCCCCccCCCCCCcC
Q 039265 554 RPADIFAIGAGHVNPS 569 (708)
Q Consensus 554 ~~~~~~~~G~G~vn~~ 569 (708)
.......+|+|++++.
T Consensus 281 ~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 281 PGLDLPDRGVGLGLAP 296 (297)
T ss_pred CCCChhhcCCceeecC
Confidence 1245678999999885
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=5.8e-41 Score=340.36 Aligned_cols=226 Identities=37% Similarity=0.563 Sum_probs=188.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||+||+.+||+|.+. +...++|.... .....|..+|||||||||++...
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------~~~~~~~~~~~----~~~~~~~~~HGT~vA~ii~~~~~ 55 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------IVGGANFTGDD----NNDYQDGNGHGTHVAGIIAALDN 55 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------ccCcccccCCC----CCCCCCCCCCHHHHHHHHhcccC
Confidence 799999999999999999854 12223343321 13556788999999999998753
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
.. .+.|+||+|+|+.+|++... + ....+++++++++++.|++|||||||... ....+..++.++.
T Consensus 56 ~~---------~~~giap~a~i~~~~~~~~~--~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~---~~~~~~~~~~~a~ 121 (229)
T cd07477 56 GV---------GVVGVAPEADLYAVKVLNDD--GSGTYSDIIAGIEWAIENGMDIINMSLGGPS---DSPALREAIKKAY 121 (229)
T ss_pred CC---------ccEeeCCCCEEEEEEEECCC--CCcCHHHHHHHHHHHHHCCCCEEEECCccCC---CCHHHHHHHHHHH
Confidence 21 24899999999999999876 5 56688999999999999999999999763 2345666777888
Q ss_pred hcCceEEEecCCCCCCCCcc--cCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFNSTI--SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKP 347 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (708)
++|+++|+||||++...... ++..+++|+||+.+.
T Consensus 122 ~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------------------- 158 (229)
T cd07477 122 AAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------------------- 158 (229)
T ss_pred HCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-------------------------------------------
Confidence 99999999999999877664 888999999998521
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSY 427 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~ 427 (708)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhh
Q 039265 428 INSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMA 507 (708)
Q Consensus 428 ~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmA 507 (708)
.+.++.||++|+.. |+.|||.+|+++++. +.|..++|||||
T Consensus 159 ----------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~---------~~~~~~~GTS~A 199 (229)
T cd07477 159 ----------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN---------NDYAYLSGTSMA 199 (229)
T ss_pred ----------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC---------CCEEEEccHHHH
Confidence 12566789999875 999999999999876 789999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 508 CPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 508 aP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
||+|||++|||+|++|++++.+||++|++|
T Consensus 200 ap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 200 TPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.5e-41 Score=345.29 Aligned_cols=249 Identities=33% Similarity=0.453 Sum_probs=190.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCCCCCCC-CCcccccccCCCCCcee--EeeeecccCCCCCCCCCCCCCCCChHHHHHHhh
Q 039265 110 KGVIIGILDGGINPDHPSFSDEGMPPP-PAKWKGRCDFSTCNNKL--IGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAA 186 (708)
Q Consensus 110 ~Gv~VaVIDtGid~~Hp~f~~~~~~~~-~~~w~~~~~~~~~~~kv--~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiia 186 (708)
+||+|||||||||++||+|.++..... ...+.+.... .+..+ ...++|... ..++.|..+|||||||||+
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~d~~~HGT~va~ii~ 74 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDD--GNGYVDDIYGWNFVNN-----DNDPMDDNGHGTHVAGIIG 74 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccC--CCCcccCCCcccccCC-----CCCCCCCCCcHHHHHHHHH
Confidence 699999999999999999997421100 0001111000 00000 011112111 3456788999999999999
Q ss_pred cCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHH
Q 039265 187 GAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGS 265 (708)
Q Consensus 187 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~ 265 (708)
|...+. ..+.|+||+|+|+.+|++... + +...+++++|+++++.+++|||+|||.... ...+..++
T Consensus 75 ~~~~~~--------~~~~GvAp~a~l~~~~~~~~~--~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~---~~~~~~~~ 141 (259)
T cd07473 75 AVGNNG--------IGIAGVAWNVKIMPLKFLGAD--GSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP---SQALRDAI 141 (259)
T ss_pred CcCCCC--------CceEEeCCCCEEEEEEEeCCC--CCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC---CHHHHHHH
Confidence 885322 224899999999999999876 5 788899999999999999999999998633 56777888
Q ss_pred HHHHhcCceEEEecCCCCCCC---CcccC--CCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEE
Q 039265 266 FAAIQKGIFVSCAAGNSGPFN---STISN--EAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVY 340 (708)
Q Consensus 266 ~~a~~~Gv~vV~AAGN~g~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (708)
.++.++|+++|+||||+|... ..++. ..+++|+||+.+.
T Consensus 142 ~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~------------------------------------ 185 (259)
T cd07473 142 ARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS------------------------------------ 185 (259)
T ss_pred HHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC------------------------------------
Confidence 899999999999999998762 34443 4578888887421
Q ss_pred ecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHH
Q 039265 341 AGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDA 420 (708)
Q Consensus 341 ~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~ 420 (708)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceee
Q 039265 421 GLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNI 500 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~ 500 (708)
.+.++.||++||. +||+.|||.++++..+. ..|..
T Consensus 186 -----------------------------~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~---------~~~~~ 220 (259)
T cd07473 186 -----------------------------NDALASFSNYGKK-------TVDLAAPGVDILSTSPG---------GGYGY 220 (259)
T ss_pred -----------------------------CCCcCcccCCCCC-------CcEEEeccCCeEeccCC---------CcEEE
Confidence 1255678999975 46999999999997765 78999
Q ss_pred ccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 501 MSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 501 ~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 221 ~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 221 MSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred eccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999985
No 30
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=350.19 Aligned_cols=244 Identities=23% Similarity=0.289 Sum_probs=176.8
Q ss_pred CCcccccC-CCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCC
Q 039265 99 GMGVWKES-NFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGH 177 (708)
Q Consensus 99 ~~~~~~~g-~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gH 177 (708)
+..+|+.. ..|+||+|+|||+|||.+||+|.++... +.. ...+.|+.+|
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~------------------------~~~------~~~~~d~~gH 53 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT------------------------LIS------GLTDQADSDH 53 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc------------------------ccC------CCCCCCCCCC
Confidence 35589874 4599999999999999999999865211 000 1125678899
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH----CCCcEEEEccCCCC
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE----DGVDVLSISIGGGS 253 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~----~g~dVIn~S~G~~~ 253 (708)
||||||||+|.. +..| +.||||+|+|+.+|++. .++++++|++|++ .++.+||||||...
T Consensus 54 GT~VAGiIaa~~--------n~~G-~~GvAp~a~l~~i~v~~-------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~ 117 (277)
T cd04843 54 GTAVLGIIVAKD--------NGIG-VTGIAHGAQAAVVSSTR-------VSNTADAILDAADYLSPGDVILLEMQTGGPN 117 (277)
T ss_pred cchhheeeeeec--------CCCc-eeeeccCCEEEEEEecC-------CCCHHHHHHHHHhccCCCCEEEEEccccCCC
Confidence 999999999863 2223 37999999999999975 2245666666666 35678999999864
Q ss_pred CC------CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc------------c-CCCCceEEEcccccCcceEEEEEc
Q 039265 254 VP------FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI------------S-NEAPWILTVGASTLDRSIVATAKL 314 (708)
Q Consensus 254 ~~------~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~------------~-~~~p~vitVga~~~~~~~~~~~~~ 314 (708)
.. .....+..++.++.++|+++|+||||++...... + ...+++|+|||++.+
T Consensus 118 ~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~--------- 188 (277)
T cd04843 118 NGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST--------- 188 (277)
T ss_pred cCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC---------
Confidence 21 1233455677788899999999999998653111 1 123467777764210
Q ss_pred CCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEE
Q 039265 315 GNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~ 394 (708)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCcee
Q 039265 395 MNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDII 474 (708)
Q Consensus 395 ~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~ 474 (708)
....++.||++|+.. ||+
T Consensus 189 ------------------------------------------------------~~~~~~~fSn~G~~v--------di~ 206 (277)
T cd04843 189 ------------------------------------------------------TGHTRLAFSNYGSRV--------DVY 206 (277)
T ss_pred ------------------------------------------------------CCCccccccCCCCcc--------ceE
Confidence 001378999999976 999
Q ss_pred eCCCcEEeeecCCCC-CCCCCCcceeeccchhhhHHHHHHHHHHHHh----c-CCCCCHHHHHHHHHcccc
Q 039265 475 GPGLSILAAWFEPLD-FNTNPKSIFNIMSGTSMACPHLSGIAALLKS----S-HPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 475 APG~~I~sa~~~~~~-~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s~~~vk~~L~~TA~ 539 (708)
|||++|+++.+.... ......+.|..++|||||||||||++|||++ + +|+|+++|||++|+.|++
T Consensus 207 APG~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 207 GWGENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred cCCCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999999875321 1111123457899999999999999999974 4 499999999999999974
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-41 Score=343.13 Aligned_cols=155 Identities=23% Similarity=0.341 Sum_probs=119.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC--CCCCCCCCCChHHHHHHhh
Q 039265 109 GKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG--TEPPIDVDGHGTHVAGTAA 186 (708)
Q Consensus 109 G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~--~~~~~d~~gHGThVAGiia 186 (708)
+++|+|||||||||++||+|.++ +...++|....+... .....|..||||||||||+
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiI~ 60 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARMIC 60 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHHHH
Confidence 78999999999999999999864 112233332211100 1223578999999999995
Q ss_pred cCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCC-----CCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC---CCC
Q 039265 187 GAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDV-----DCTESDLLAGLDAAIEDGVDVLSISIGGGSVP---FFN 258 (708)
Q Consensus 187 g~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~-----g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~---~~~ 258 (708)
|+||+|+|+.+|+++.... .++...+++||+||+++|+||||||||..... ...
T Consensus 61 ------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~ 122 (247)
T cd07491 61 ------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDI 122 (247)
T ss_pred ------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccch
Confidence 7999999999999986520 24567899999999999999999999976421 125
Q ss_pred CHHHHHHHHHHhcCceEEEecCCCCCCCC-c--ccCCCCceEEEccc
Q 039265 259 DSIAVGSFAAIQKGIFVSCAAGNSGPFNS-T--ISNEAPWILTVGAS 302 (708)
Q Consensus 259 ~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~-~--~~~~~p~vitVga~ 302 (708)
..+..++.+|.++|++||+||||+|.... . .++..+++|+|||.
T Consensus 123 ~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~ 169 (247)
T cd07491 123 NELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAA 169 (247)
T ss_pred HHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEee
Confidence 67888888999999999999999998764 3 34677899999985
No 32
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.2e-41 Score=356.64 Aligned_cols=274 Identities=36% Similarity=0.516 Sum_probs=209.9
Q ss_pred EEEEEcCCCCCCCCCCC-CCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 113 IIGILDGGINPDHPSFS-DEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 113 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
+|||||||||++||+|. ++ + ...++.+.+.|.++.. ......|..+|||||||||+|.. .
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------~~~~~~~~~~~~~~~~--~~~~~~~~~~HGT~va~ii~~~~-~ 61 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------IWSKVPGGYNFVDGNP--NPSPSDDDNGHGTHVAGIIAGNG-G 61 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------EEEEEEEEEETTTTBS--TTTSSSTSSSHHHHHHHHHHHTT-S
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------ccccccceeeccCCCC--CcCccccCCCccchhhhhccccc-c
Confidence 69999999999999998 33 0 1123444556665420 02456778899999999999985 2
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHH-HCCCcEEEEccCCC--C-CCCCCCHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAI-EDGVDVLSISIGGG--S-VPFFNDSIAVGSFA 267 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~S~G~~--~-~~~~~~~~~~a~~~ 267 (708)
.+ .....|+||+|+|+.+|++... +....+++++|++++ +.+++|||||||.. . .......+..++..
T Consensus 62 -~~-----~~~~~Gva~~a~l~~~~i~~~~--~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~~ 133 (282)
T PF00082_consen 62 -NN-----GPGINGVAPNAKLYSYKIFDNS--GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAIDY 133 (282)
T ss_dssp -SS-----SSSETCSSTTSEEEEEECSSTT--SEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHHH
T ss_pred -cc-----cccccccccccccccccccccc--ccccccccchhhhhhhccCCcccccccccccccccccccccccccccc
Confidence 11 1223799999999999998776 567788999999999 89999999999872 1 12233445566668
Q ss_pred HHhcCceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCC
Q 039265 268 AIQKGIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN 344 (708)
Q Consensus 268 a~~~Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (708)
+.++|+++|+||||+|.... ..++..+++|+||+...
T Consensus 134 ~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~---------------------------------------- 173 (282)
T PF00082_consen 134 AEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN---------------------------------------- 173 (282)
T ss_dssp HHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET----------------------------------------
T ss_pred ccccCcceeecccccccccccccccccccccccccccccc----------------------------------------
Confidence 88999999999999987765 35677788999998521
Q ss_pred CCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHH
Q 039265 345 GKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKI 424 (708)
Q Consensus 345 ~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l 424 (708)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccch
Q 039265 425 KSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504 (708)
Q Consensus 425 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 504 (708)
.+.++.||++|+... ++++||||+|||.+|.+.++... ...|..++||
T Consensus 174 -------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~------~~~~~~~~GT 221 (282)
T PF00082_consen 174 -------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSD------RGSYTSFSGT 221 (282)
T ss_dssp -------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTE------SEEEEEEESH
T ss_pred -------------------------ccccccccccccccc-ccccccccccccccccccccccc------cccccccCcC
Confidence 115678999976543 57999999999999998886510 0347889999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 505 SMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 505 SmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
|||||+|||++|||+|++|+|++.+||.+|++||.++.... .......||||+||+.+||+
T Consensus 222 S~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 222 SFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHHTTSBE-HHHHHH
T ss_pred CchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999986221 23456788999999999874
No 33
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=9.7e-40 Score=329.58 Aligned_cols=221 Identities=25% Similarity=0.305 Sum_probs=174.5
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcc
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFV 190 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 190 (708)
||+|||||||||++||+|.+.... .+.+..+..........|..||||||||||+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia---- 55 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------GEVTIDLEIIVVSAEGGDKDGHGTACAGIIK---- 55 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------cccccccccccCCCCCCCCCCcHHHHHHHHH----
Confidence 799999999999999999864211 1111100000003455678999999999997
Q ss_pred cCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 191 KNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 191 ~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
+.+|+++|+.+|+++.. + +...++++||+|++++|++|||||||..... ....+..++.++.
T Consensus 56 --------------~~~p~~~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-~~~~~~~~~~~a~ 118 (222)
T cd07492 56 --------------KYAPEAEIGSIKILGED--GRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-DFPLLKELLEYAY 118 (222)
T ss_pred --------------ccCCCCeEEEEEEeCCC--CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-cCHHHHHHHHHHH
Confidence 34699999999999876 5 7888899999999999999999999986432 2356677777888
Q ss_pred hcCceEEEecCCCCCCCCcccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCC
Q 039265 270 QKGIFVSCAAGNSGPFNSTISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPES 349 (708)
Q Consensus 270 ~~Gv~vV~AAGN~g~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (708)
++|+++|+||||++.... +++..+++|+|++.....
T Consensus 119 ~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------------------- 154 (222)
T cd07492 119 KAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------------------- 154 (222)
T ss_pred HCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------------------
Confidence 899999999999987543 377788999999742110
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHh
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYIN 429 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 429 (708)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHH
Q 039265 430 STATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACP 509 (708)
Q Consensus 430 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP 509 (708)
.. +.+++ ++|+.|||.+|+++.+. +.|..++|||||||
T Consensus 155 ----------------------~~---~~~~~--------~~~~~apg~~i~~~~~~---------~~~~~~~GTS~Aap 192 (222)
T cd07492 155 ----------------------PK---SFWYI--------YVEFSADGVDIIAPAPH---------GRYLTVSGNSFAAP 192 (222)
T ss_pred ----------------------Cc---ccccC--------CceEEeCCCCeEeecCC---------CCEEEeccHHHHHH
Confidence 01 11132 34999999999999876 78999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 510 HLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 510 ~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+|||++|||+|++|+|+++|||++|++||+
T Consensus 193 ~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 193 HVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.1e-39 Score=343.72 Aligned_cols=247 Identities=30% Similarity=0.375 Sum_probs=174.4
Q ss_pred ccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeeccc--CCCCCCCCCCCCCCCChHHHHHHhhcC
Q 039265 111 GVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNI--EGNVKGTEPPIDVDGHGTHVAGTAAGA 188 (708)
Q Consensus 111 Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~--~~~~~~~~~~~d~~gHGThVAGiiag~ 188 (708)
.|+|||||||||++||+|.+.-... .+ .+.....+.. ...........|..||||||||+|+|.
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~ 66 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK----------NLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAAN 66 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc----------ccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcC
Confidence 4899999999999999998532110 00 0000000000 000000234567799999999999986
Q ss_pred cccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCC--------CCC
Q 039265 189 FVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPF--------FND 259 (708)
Q Consensus 189 ~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~--------~~~ 259 (708)
.. ..||||+|+|+.+|+++.. + ....+++++|++|++++++|||||||...... ...
T Consensus 67 ~~------------~~GvAp~a~i~~~~v~~~~--~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~ 132 (294)
T cd07482 67 GN------------IKGVAPGIGIVSYRVFGSC--GSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYN 132 (294)
T ss_pred CC------------CceeCCCCEEEEEEeecCC--CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhH
Confidence 31 1599999999999999877 5 47889999999999999999999999753211 123
Q ss_pred HHHHHHHHHHhcCceEEEecCCCCCCCCc----------------------ccCCCCceEEEcccccCcceEEEEEcCCC
Q 039265 260 SIAVGSFAAIQKGIFVSCAAGNSGPFNST----------------------ISNEAPWILTVGASTLDRSIVATAKLGNR 317 (708)
Q Consensus 260 ~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~ 317 (708)
.+..++..+.++|++||+||||+|..... +++..+++|+|||+
T Consensus 133 ~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~--------------- 197 (294)
T cd07482 133 AYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSAT--------------- 197 (294)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEee---------------
Confidence 56667777889999999999999865421 22233344444442
Q ss_pred ceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecC
Q 039265 318 EEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMND 397 (708)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~ 397 (708)
T Consensus 198 -------------------------------------------------------------------------------- 197 (294)
T cd07482 198 -------------------------------------------------------------------------------- 197 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCC
Q 039265 398 EPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPG 477 (708)
Q Consensus 398 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG 477 (708)
...+.++.||++|+.. +|++|||
T Consensus 198 --------------------------------------------------~~~~~~~~~S~~g~~~-------~~~~apG 220 (294)
T cd07482 198 --------------------------------------------------DNNGNLSSFSNYGNSR-------IDLAAPG 220 (294)
T ss_pred --------------------------------------------------CCCCCcCccccCCCCc-------ceEECCC
Confidence 1233677899998654 4999999
Q ss_pred CcEEeeecCCC---C----------CCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCH-HHHHHHHHcc
Q 039265 478 LSILAAWFEPL---D----------FNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSP-AAIKSALMTT 537 (708)
Q Consensus 478 ~~I~sa~~~~~---~----------~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~-~~vk~~L~~T 537 (708)
+++....+... . ......+.|..++|||||||+|||++|||+|++|.+++ .|||++|++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 221 GDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred CCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 98853221100 0 01133468999999999999999999999999999999 9999999986
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=2.2e-40 Score=349.57 Aligned_cols=248 Identities=25% Similarity=0.285 Sum_probs=182.0
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCC--CCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPP--IDVDG 176 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~--~d~~g 176 (708)
+..+|+.+++|+||+|+|||||||+.||+|.++... ...++|....+ ...+ .|..+
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------~~~~~~~~~~~---~~~~~~~~~~g 85 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------EASYDFNDNDP---DPTPRYDDDNS 85 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------cccccccCCCC---CCCCccccccc
Confidence 566999999999999999999999999999864211 01223332211 1122 27889
Q ss_pred ChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC-
Q 039265 177 HGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP- 255 (708)
Q Consensus 177 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~- 255 (708)
|||||||||+|..... . ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||.....
T Consensus 86 HGT~vAgiiag~~~~~-------~-~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~~~ 153 (297)
T cd04059 86 HGTRCAGEIAAVGNNG-------I-CGVGVAPGAKLGGIRMLDGD---VTDVVEAESLGLNPD-YIDIYSNSWGPDDDGK 153 (297)
T ss_pred cCcceeeEEEeecCCC-------c-ccccccccceEeEEEecCCc---cccHHHHHHHhcccC-CceEEECCCCCCCCCC
Confidence 9999999999885221 1 23799999999999998754 333445566665544 469999999975422
Q ss_pred ---CCCCHHHHHHHHHHh-----cCceEEEecCCCCCCCCc----ccCCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 256 ---FFNDSIAVGSFAAIQ-----KGIFVSCAAGNSGPFNST----ISNEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 256 ---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~g~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
.....+..++.++.. +|++||+||||+|..... .....+++|+|||.+.
T Consensus 154 ~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------------------- 214 (297)
T cd04059 154 TVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------------------- 214 (297)
T ss_pred ccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------------------
Confidence 122334444555543 699999999999974322 2245688999988521
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCc----
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLS---- 479 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~---- 479 (708)
.+.++.||++|+.. +++|||..
T Consensus 215 ----------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 215 ----------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred ----------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 12567899999987 89999987
Q ss_pred ---EEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 480 ---ILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 480 ---I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 241 ~~~i~~~~~~~------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 76665431 0156788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1.2e-38 Score=331.05 Aligned_cols=244 Identities=29% Similarity=0.395 Sum_probs=186.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhc
Q 039265 108 FGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAG 187 (708)
Q Consensus 108 ~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag 187 (708)
+|+||+|+|||+||+.+||+|.+..... ..+....+. ......|..+|||||||||+|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~HGT~vagiiag 58 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA---------------------SYYVAVNDA-GYASNGDGDSHGTHVAGVIAA 58 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc---------------------ccccccccc-cCCCCCCCCChHHHHHHHHhc
Confidence 6999999999999999999998652221 000000000 023456789999999999998
Q ss_pred CcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCCCCCC------------
Q 039265 188 AFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGGGSVP------------ 255 (708)
Q Consensus 188 ~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~------------ 255 (708)
+..+ ..+.|+||+|+|+.+|+++..........+.++++++++.+++|||||||.....
T Consensus 59 ~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 129 (267)
T cd04848 59 ARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAA 129 (267)
T ss_pred CcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcc
Confidence 8532 2348999999999999998751115567788999999999999999999986422
Q ss_pred CCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcc---------cCCCCceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 256 FFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTI---------SNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 256 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.....+...+..+.++|+++|+||||++...... ++..+++|+||+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------------------- 189 (267)
T cd04848 130 TQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------------------- 189 (267)
T ss_pred ccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------------------
Confidence 1455666777788899999999999998654332 23457888888853211
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCcccc--ccCCCCCCCCCCCcCCceeeCCCcEEeee
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVS--FSSRGPNLASPGILKPDIIGPGLSILAAW 484 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~g~~KPDI~APG~~I~sa~ 484 (708)
.... ||++|+.. ..++++|||.+|+++.
T Consensus 190 ---------------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~ 219 (267)
T cd04848 190 ---------------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTD 219 (267)
T ss_pred ---------------------------------------------Ccccccccccchhh-----hhheeecCcCceeecc
Confidence 2223 47887654 2347999999999988
Q ss_pred cCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcccc
Q 039265 485 FEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTAD 539 (708)
Q Consensus 485 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~ 539 (708)
+.. ...|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 220 ~~~-------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 220 PDG-------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCC-------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 631 168899999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-37 Score=320.16 Aligned_cols=355 Identities=26% Similarity=0.385 Sum_probs=257.6
Q ss_pred ceEEEEeCCCCCCCcccchhHHHHHHHhcccc-ccC--CCCCCccEEEecceeEEEEEEcCH-----HHHHHHhcCCCeE
Q 039265 4 QTYIVSVQQPEGSDLAESEYVENWHRSFLPYS-LES--SDVQQRPFYSYKNVISGFAAKLTE-----EEVQDMKKKNGFV 75 (708)
Q Consensus 4 ~~YIV~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~--~~~~~~v~~~y~~~~~g~sv~~~~-----~~i~~L~~~~~V~ 75 (708)
..|||+|+.-.... .++..+++.|... ... --.....-..|-.-|.-+-++-.. -+|+.|..+|.|+
T Consensus 50 ~EyIv~F~~y~~Ak-----~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk 124 (1033)
T KOG4266|consen 50 SEYIVRFKQYKPAK-----DRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVK 124 (1033)
T ss_pred ceeEEEecccccch-----HHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCce
Confidence 57999999876432 2334444444421 000 001122223454455555554432 2489999999999
Q ss_pred EEEeceeeccccc------------------------------CCCcccccc------------cCCcccccCCCCCccE
Q 039265 76 SARPERKVRLQTT------------------------------HSPSFLGLH------------QGMGVWKESNFGKGVI 113 (708)
Q Consensus 76 ~V~~~~~~~~~~~------------------------------~s~~~~g~~------------~~~~~~~~g~~G~Gv~ 113 (708)
.|.|.+.+.+... ..+.-|+-. .+.-+|+.|+||++|+
T Consensus 125 ~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~Vk 204 (1033)
T KOG4266|consen 125 VVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVK 204 (1033)
T ss_pred eecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceE
Confidence 9998766543100 000011100 1345999999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCcccCC
Q 039265 114 IGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVKNA 193 (708)
Q Consensus 114 VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~ 193 (708)
|||.|||+..+||.|+. +....++.+ ...-.|.-||||.|||+|||..
T Consensus 205 vAiFDTGl~~~HPHFrn----------------------vKERTNWTN------E~tLdD~lgHGTFVAGvia~~~---- 252 (1033)
T KOG4266|consen 205 VAIFDTGLRADHPHFRN----------------------VKERTNWTN------EDTLDDNLGHGTFVAGVIAGRN---- 252 (1033)
T ss_pred EEEeecccccCCccccc----------------------hhhhcCCcC------ccccccCcccceeEeeeeccch----
Confidence 99999999999999973 111223332 2455678999999999999874
Q ss_pred cccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCCCCCCCCHHHHHHHHHHhcC
Q 039265 194 ESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGSVPFFNDSIAVGSFAAIQKG 272 (708)
Q Consensus 194 ~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~~~G 272 (708)
...|.||+++|+++|||.+. . .+.+..++|+.||+....||+|+|+|++. +.+.++-.-+.+....+
T Consensus 253 --------ec~gfa~d~e~~~frvft~~--qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--fmD~PFVeKVwEltAnN 320 (1033)
T KOG4266|consen 253 --------ECLGFASDTEIYAFRVFTDA--QVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--FMDLPFVEKVWELTANN 320 (1033)
T ss_pred --------hhcccCCccceeEEEeeccc--eeehhhHHHHHHHHHHhhhcceEeeccCCcc--cccchHHHHHHhhccCc
Confidence 13799999999999999876 4 77889999999999999999999999974 45556666666777899
Q ss_pred ceEEEecCCCCCCCCcccCCC--CceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCCCCCCC
Q 039265 273 IFVSCAAGNSGPFNSTISNEA--PWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESA 350 (708)
Q Consensus 273 v~vV~AAGN~g~~~~~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (708)
+++|.|+||+|+-..+..+++ ..||.||.-
T Consensus 321 vIMvSAiGNDGPLYGTLNNPaDQsDViGVGGI------------------------------------------------ 352 (1033)
T KOG4266|consen 321 VIMVSAIGNDGPLYGTLNNPADQSDVIGVGGI------------------------------------------------ 352 (1033)
T ss_pred EEEEEecCCCCcceeecCCcccccceeeeccc------------------------------------------------
Confidence 999999999999877665433 344444431
Q ss_pred ccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhc
Q 039265 351 FCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINS 430 (708)
Q Consensus 351 ~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 430 (708)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCceEEEEecceEeCCcCCCccccccCCCCCC-C---CCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhh
Q 039265 431 TATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL-A---SPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSM 506 (708)
Q Consensus 431 ~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~-~---~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSm 506 (708)
.-.+.++.|||||-+. . ..||+||||++-|.+|....-. .+...+||||.
T Consensus 353 -----------------dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~---------~GCr~LSGTSV 406 (1033)
T KOG4266|consen 353 -----------------DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS---------TGCRSLSGTSV 406 (1033)
T ss_pred -----------------cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc---------ccchhccCCcc
Confidence 1234899999999654 2 2489999999999999876554 77889999999
Q ss_pred hHHHHHHHHHHHHh----cCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCCCCcCCCCC
Q 039265 507 ACPHLSGIAALLKS----SHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGHVNPSRAND 573 (708)
Q Consensus 507 AaP~VAG~aALl~q----~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~Al~ 573 (708)
|+|.|||+++||.+ +.--+.|+.+|++|+..|.+++.. .-++||+|++|+.++.+
T Consensus 407 aSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 407 ASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred cchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC------------chhhccCcchhHHHHHH
Confidence 99999999999965 334568999999999999998653 33799999999988876
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-34 Score=292.42 Aligned_cols=195 Identities=21% Similarity=0.170 Sum_probs=143.2
Q ss_pred CCCCCCCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHH--HHCCCcEEEE
Q 039265 170 PPIDVDGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAA--IEDGVDVLSI 247 (708)
Q Consensus 170 ~~~d~~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~ 247 (708)
...|.++|||||||||||. .|++|+|+|+..++.. .....+..+++|+ .+.+++||||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-----~~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-----KSNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-----CCCCccHHHHHHHHHhcCCceEEEe
Confidence 3457899999999999987 4677999998765522 1223466777787 5679999999
Q ss_pred ccCCCCCCC------CCCHHHHHHHHHHhc-CceEEEecCCCCCCC-----CcccCCCCceEEEcccccCcceEEEEEcC
Q 039265 248 SIGGGSVPF------FNDSIAVGSFAAIQK-GIFVSCAAGNSGPFN-----STISNEAPWILTVGASTLDRSIVATAKLG 315 (708)
Q Consensus 248 S~G~~~~~~------~~~~~~~a~~~a~~~-Gv~vV~AAGN~g~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~ 315 (708)
|||...... ..+.+..++.++.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 999864321 223566666676665 999999999999853 234567789999998632110
Q ss_pred CCceeeeeeccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEe
Q 039265 316 NREEFDGESVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILM 395 (708)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~ 395 (708)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceee
Q 039265 396 NDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIG 475 (708)
Q Consensus 396 ~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~A 475 (708)
.-..+.||++|-....++..||||+|
T Consensus 164 ------------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~A 189 (247)
T cd07488 164 ------------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVA 189 (247)
T ss_pred ------------------------------------------------------cceecccccccCCCCCCCCceeEEEE
Confidence 00234556554322235789999999
Q ss_pred CCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCH------HHHHHHHHcc
Q 039265 476 PGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSP------AAIKSALMTT 537 (708)
Q Consensus 476 PG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~------~~vk~~L~~T 537 (708)
||++|++ +. +.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 190 PG~~i~s--~~---------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 190 PGSNYNL--PD---------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred eeeeEEC--CC---------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 9999998 33 67899999999999999999999999887764 3567777665
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-34 Score=309.55 Aligned_cols=357 Identities=25% Similarity=0.302 Sum_probs=232.5
Q ss_pred CCChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHHHCCCcEEEEccCCCC
Q 039265 175 DGHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAIEDGVDVLSISIGGGS 253 (708)
Q Consensus 175 ~gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~S~G~~~ 253 (708)
..|||||||||+|+..+... ..|+||+|+|+.+++.+...+. -+...+.+|+..++++++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999755433 3799999999999998765322 45667899999999999999999999764
Q ss_pred -CCCCCCHHHHHHHHHHhcCceEEEecCCCCCCCCcccC---CCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCC
Q 039265 254 -VPFFNDSIAVGSFAAIQKGIFVSCAAGNSGPFNSTISN---EAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPK 329 (708)
Q Consensus 254 -~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~g~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (708)
.+.....+...-+...++|+++|+||||+||...+.++ ....+|.|||.-......+. |
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~--------------y--- 444 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE--------------Y--- 444 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh--------------h---
Confidence 34445555555445558999999999999999877753 44578888884211100000 0
Q ss_pred CCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCc
Q 039265 330 DFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPH 409 (708)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~ 409 (708)
T Consensus 445 -------------------------------------------------------------------------------- 444 (1304)
T KOG1114|consen 445 -------------------------------------------------------------------------------- 444 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCC
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLD 489 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~ 489 (708)
... .+-......+|||||+. ||-+-..|+|||+.|-+- |..
T Consensus 445 ----------------~~~------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~-- 485 (1304)
T KOG1114|consen 445 ----------------SVR------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY-- 485 (1304)
T ss_pred ----------------hhh------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chh--
Confidence 000 01122577899999999 789999999999999763 211
Q ss_pred CCCCCCcceeeccchhhhHHHHHHHHHHHH----hcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCC
Q 039265 490 FNTNPKSIFNIMSGTSMACPHLSGIAALLK----SSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565 (708)
Q Consensus 490 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~ 565 (708)
....-..|.|||||+|+++|.+|||+ |.+-.|||..||.+|++||+++++. .++.||.|+
T Consensus 486 ----tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------d~faqG~Gm 549 (1304)
T KOG1114|consen 486 ----TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------DSFAQGQGM 549 (1304)
T ss_pred ----hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------chhccCcce
Confidence 11456789999999999999999985 4577899999999999999998653 458999999
Q ss_pred CCcCCCCCCcccccCCCCCccccc-ccCCCC-cceeEEEecCCccccccCcccccCCCceEEEEEEE----ecC---CCc
Q 039265 566 VNPSRANDPGLVYDIQPDDYIPYL-CGLGYS-DKEVGILVHRPVAQLNYPSFSVTLGPAQTFTRTVT----NVG---QVY 636 (708)
Q Consensus 566 vn~~~Al~~~l~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~n~ps~~~~~~~~~~~~~tv~----n~g---~~~ 636 (708)
|++++|.+--.-.+.....-+.|+ ...+-+ +.-+.. +++ ...+- +..+++-|. |-- ...
T Consensus 550 lqVdkAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyL--Rep-~~~~~---------p~e~~i~VePiF~~~~e~~kek 617 (1304)
T KOG1114|consen 550 LQVDKAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYL--REP-TQVCS---------PSEHTIGVEPIFENGEENEKEK 617 (1304)
T ss_pred eehhHHHHHHHHhhhcCCccceeEEEeeccccccceEe--cCC-cccCC---------ccccceeccccccCcccccccc
Confidence 999999862111111111122220 000000 000100 000 00011 122222221 100 111
Q ss_pred eeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc-----CceEEEEeEEEEeC
Q 039265 637 SSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS-----AKYSVRSPISVRLQ 708 (708)
Q Consensus 637 ~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~-----~~~~~~~P~~~~~~ 708 (708)
..|.+.+.-.....+---|+.+-+. ++.+.+.|+++++.... +.+++.|.--| .+.-+|+||.|..+
T Consensus 618 i~Fe~~L~L~st~pwVq~p~~l~l~--~~~R~i~VrVDpt~l~~---G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 618 ISFEVQLSLASTQPWVQCPEYLMLA--NQGRGINVRVDPTGLAP---GVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred ccceeeEeeecCCcceeCchhheec--cCCceeEEEECCcCCCC---CcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 2222222211111111137777775 58889999999988876 78888888543 57999999998753
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=100.00 E-value=2.9e-31 Score=270.17 Aligned_cols=234 Identities=36% Similarity=0.506 Sum_probs=176.5
Q ss_pred cEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCCCCCChHHHHHHhhcCccc
Q 039265 112 VIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPIDVDGHGTHVAGTAAGAFVK 191 (708)
Q Consensus 112 v~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~ 191 (708)
|+|+|||+|++.+||+|...... .....++...... .....+..+||||||++|++....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~HGt~va~~i~~~~~~ 60 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGG------------------GDGGNDDDDNENG--PTDPDDGNGHGTHVAGIIAASANN 60 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccC------------------cccccccccCcCC--CCCCCCCCCcHHHHHHHHhcCCCC
Confidence 68999999999999987211000 0001111110000 124567889999999999988532
Q ss_pred CCcccCCCCcceEEecCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHH-HCCCcEEEEccCCCCCCCCCCHHHHHHHHHH
Q 039265 192 NAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVD-CTESDLLAGLDAAI-EDGVDVLSISIGGGSVPFFNDSIAVGSFAAI 269 (708)
Q Consensus 192 ~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~S~G~~~~~~~~~~~~~a~~~a~ 269 (708)
.. ..|+||+++|+.+|+.... + .....+++++++++ +.+++|||||||..... ....+...+.++.
T Consensus 61 ~~---------~~g~a~~a~i~~~~~~~~~--~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-~~~~~~~~~~~~~ 128 (241)
T cd00306 61 GG---------GVGVAPGAKLIPVKVLDGD--GSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-PSSALSEAIDYAL 128 (241)
T ss_pred CC---------CEEeCCCCEEEEEEEecCC--CCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-CCHHHHHHHHHHH
Confidence 11 1799999999999998776 4 67788999999999 89999999999987433 3456666777777
Q ss_pred hc-CceEEEecCCCCCCCC---cccCCCCceEEEcccccCcceEEEEEcCCCceeeeeeccCCCCCCCCceeEEEecCCC
Q 039265 270 QK-GIFVSCAAGNSGPFNS---TISNEAPWILTVGASTLDRSIVATAKLGNREEFDGESVFQPKDFPQTPLPLVYAGMNG 345 (708)
Q Consensus 270 ~~-Gv~vV~AAGN~g~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (708)
++ |+++|+||||.+.... ..++..+++|+||+.+...
T Consensus 129 ~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~--------------------------------------- 169 (241)
T cd00306 129 AKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG--------------------------------------- 169 (241)
T ss_pred HhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC---------------------------------------
Confidence 77 9999999999998876 4778899999999963211
Q ss_pred CCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccCCcccceEEEcHHHHHHHH
Q 039265 346 KPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 346 ~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~ 425 (708)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCceEEEEecceEeCCcCCCccc-cccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccch
Q 039265 426 SYINSTATPMATIIFKGTVIGNSLAPTVV-SFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGT 504 (708)
Q Consensus 426 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGT 504 (708)
... .++++| .|||+.|||.++.+.... ....+..++||
T Consensus 170 --------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-------~~~~~~~~~GT 208 (241)
T cd00306 170 --------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-------GGGGYATLSGT 208 (241)
T ss_pred --------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-------CCCCeEeeccH
Confidence 111 334444 466999999999874211 12789999999
Q ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHcc
Q 039265 505 SMACPHLSGIAALLKSSHPYWSPAAIKSALMTT 537 (708)
Q Consensus 505 SmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~T 537 (708)
|||||+|||++|||+|++|++++.++|++|+.|
T Consensus 209 S~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 209 SMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.5e-24 Score=240.56 Aligned_cols=274 Identities=34% Similarity=0.479 Sum_probs=199.6
Q ss_pred CCccccc--CCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCC-CCCCCC
Q 039265 99 GMGVWKE--SNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTE-PPIDVD 175 (708)
Q Consensus 99 ~~~~~~~--g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~-~~~d~~ 175 (708)
....|.. +++|+|++|+|||+||+..||+|.+.... .++|.... .. ...|..
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------~~~~~~~~----~~~~~~d~~ 183 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------GGDFVDGD----PEPPFLDDN 183 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------ccccccCC----CCCCCCCCC
Confidence 4457887 99999999999999999999999865211 13344321 11 246899
Q ss_pred CChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC--CcEEEEccCCCC
Q 039265 176 GHGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG--VDVLSISIGGGS 253 (708)
Q Consensus 176 gHGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g--~dVIn~S~G~~~ 253 (708)
+|||||+|++++.... +.....|+||+++++.+|++..........+++++++++++.+ +++||||+|...
T Consensus 184 ~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~~ 256 (508)
T COG1404 184 GHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSL 256 (508)
T ss_pred CCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCCc
Confidence 9999999999984211 1112479999999999999986521367777899999999999 999999999862
Q ss_pred CCCCCCHHHHHHHHHHhcC-ceEEEecCCCCCCCC----cccCCC--CceEEEcccccCcceEEEEEcCCCceeeeeecc
Q 039265 254 VPFFNDSIAVGSFAAIQKG-IFVSCAAGNSGPFNS----TISNEA--PWILTVGASTLDRSIVATAKLGNREEFDGESVF 326 (708)
Q Consensus 254 ~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~g~~~~----~~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (708)
.......+..++..+...| +++|+++||.+.... .++... +.+++||+...
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 2233455666666777777 999999999987752 222222 25566665310
Q ss_pred CCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc
Q 039265 327 QPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA 406 (708)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~ 406 (708)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEe----
Q 039265 407 DPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILA---- 482 (708)
Q Consensus 407 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~s---- 482 (708)
.+.++.||++|+.. ..+++|||.+|.+
T Consensus 315 -------------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~ 345 (508)
T COG1404 315 -------------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAV 345 (508)
T ss_pred -------------------------------------------CCccccccccCCCC------CcceeCCCccccccccc
Confidence 12677899999752 2299999999988
Q ss_pred -eecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCC-CCCHHHHHHHHHccccccccCCccccccCCCCCCCCc
Q 039265 483 -AWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHP-YWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFA 560 (708)
Q Consensus 483 -a~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~ 560 (708)
+++... ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.... .......
T Consensus 346 ~~~~~~~-------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 407 (508)
T COG1404 346 NTLPGDG-------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTP-----------LSGVDNL 407 (508)
T ss_pred eeeeCCc-------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccccc-----------CCccccc
Confidence 555410 2499999999999999999999999999 8999999999888887300 1123356
Q ss_pred cCCCCCCcCCCCC
Q 039265 561 IGAGHVNPSRAND 573 (708)
Q Consensus 561 ~G~G~vn~~~Al~ 573 (708)
++.|..+...+..
T Consensus 408 ~~~~~~~~~~~~~ 420 (508)
T COG1404 408 VGGGLANLDAAAT 420 (508)
T ss_pred cccCccccccccc
Confidence 6777666655544
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=4.2e-22 Score=199.36 Aligned_cols=307 Identities=19% Similarity=0.237 Sum_probs=187.6
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCCCCCCCC--CCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKGTEPPID--VDG 176 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~~~~~~d--~~g 176 (708)
+..+|.+|++||+|+++|+|.||||-||+|+.+ ..--..++|...+..+ ..-..| .+.
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n-------------------ynaeasydfssndpfp-yprytddwfns 209 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN-------------------YNAEASYDFSSNDPFP-YPRYTDDWFNS 209 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc-------------------cCceeecccccCCCCC-CCcccchhhhc
Confidence 456999999999999999999999999999742 1122345565432111 111122 478
Q ss_pred ChHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCCC
Q 039265 177 HGTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSVP 255 (708)
Q Consensus 177 HGThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~ 255 (708)
|||.|||-+++...++.- -.|||.+.++..+|+++.. +..|+++|-..-.+ ...+|-+-|||.....
T Consensus 210 hgtrcagev~aardngic--------gvgvaydskvagirmldqp----ymtdlieansmghep~kihiysaswgptddg 277 (629)
T KOG3526|consen 210 HGTRCAGEVVAARDNGIC--------GVGVAYDSKVAGIRMLDQP----YMTDLIEANSMGHEPSKIHIYSASWGPTDDG 277 (629)
T ss_pred cCccccceeeeeccCCce--------eeeeeeccccceeeecCCc----hhhhhhhhcccCCCCceEEEEecccCcCCCC
Confidence 999999988877543221 1699999999999998754 55566554322222 2478999999975422
Q ss_pred -CCC---CHHHHHHHHHH-----hcCceEEEecCCCCCCC-Cccc--CCCCceEEEcccccCcceEEEEEcCCCceeeee
Q 039265 256 -FFN---DSIAVGSFAAI-----QKGIFVSCAAGNSGPFN-STIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGE 323 (708)
Q Consensus 256 -~~~---~~~~~a~~~a~-----~~Gv~vV~AAGN~g~~~-~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~ 323 (708)
..+ ++..+|+-+-+ ..|-++|.|.|..|.+. +... +.+-|.|++-+.-.+ |+..
T Consensus 278 ktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-----------g~na--- 343 (629)
T KOG3526|consen 278 KTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-----------GENA--- 343 (629)
T ss_pred cccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC-----------Cccc---
Confidence 111 22222222323 25668999999988543 2222 344466665442111 1000
Q ss_pred eccCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc
Q 039265 324 SVFQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS 403 (708)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~ 403 (708)
...+.|.+
T Consensus 344 -----------------------hydescss------------------------------------------------- 351 (629)
T KOG3526|consen 344 -----------------------HYDESCSS------------------------------------------------- 351 (629)
T ss_pred -----------------------cccchhhH-------------------------------------------------
Confidence 00111211
Q ss_pred cccCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEee
Q 039265 404 VIADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAA 483 (708)
Q Consensus 404 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa 483 (708)
-.-+.||+-|-.+.. |.-.-|
T Consensus 352 -----------------------------------------------tlastfsng~rnpet-gvattd----------- 372 (629)
T KOG3526|consen 352 -----------------------------------------------TLASTFSNGGRNPET-GVATTD----------- 372 (629)
T ss_pred -----------------------------------------------HHHHHhhcCCcCCCc-ceeeec-----------
Confidence 134567776654431 111111
Q ss_pred ecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCcc----ccccCCCCCCCC
Q 039265 484 WFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGER----IVDETLRPADIF 559 (708)
Q Consensus 484 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~----~~~~~~~~~~~~ 559 (708)
-++.....-||||.|||-.||+.||.++++|.|+..+++.+-.-|.++..-.+.. +.-++-....+.
T Consensus 373 ---------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnh 443 (629)
T KOG3526|consen 373 ---------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNH 443 (629)
T ss_pred ---------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeec
Confidence 1125566789999999999999999999999999999999877777654321111 111222334567
Q ss_pred ccCCCCCCcCCCCCCcccccCCCCCcccccccCCC
Q 039265 560 AIGAGHVNPSRANDPGLVYDIQPDDYIPYLCGLGY 594 (708)
Q Consensus 560 ~~G~G~vn~~~Al~~~l~~~~~~~~~~~~~~~~~~ 594 (708)
.||+|.+|+.+.+.....+...+.- |-|..|.
T Consensus 444 lfgfgvldagamv~lak~wktvppr---yhc~ag~ 475 (629)
T KOG3526|consen 444 LFGFGVLDAGAMVMLAKAWKTVPPR---YHCTAGL 475 (629)
T ss_pred ccccccccHHHHHHHHHHhccCCCc---eeecccc
Confidence 8999999998877655555544443 4576654
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=2.7e-17 Score=177.26 Aligned_cols=99 Identities=27% Similarity=0.315 Sum_probs=80.0
Q ss_pred eEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHC---CCcEEEEccCCCCCC---CCCCHHHHHHHHHHhcCceEE
Q 039265 203 AAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIED---GVDVLSISIGGGSVP---FFNDSIAVGSFAAIQKGIFVS 276 (708)
Q Consensus 203 ~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~S~G~~~~~---~~~~~~~~a~~~a~~~Gv~vV 276 (708)
+.||||+|+|+.|++.+.. ...++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||.||
T Consensus 83 ~~gvAP~a~i~~~~~~~~~-----~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 83 AGAIAPGANITLYFAPGTV-----TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHhccCCCeEEEEEECCcC-----ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 4799999999999997542 34677888888887 999999999986432 233567778888999999999
Q ss_pred EecCCCCCCCC-----------cccCCCCceEEEcccccCc
Q 039265 277 CAAGNSGPFNS-----------TISNEAPWILTVGASTLDR 306 (708)
Q Consensus 277 ~AAGN~g~~~~-----------~~~~~~p~vitVga~~~~~ 306 (708)
+|+||+|.... .+++.+|++++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 3578999999999986544
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.29 E-value=3e-11 Score=112.66 Aligned_cols=118 Identities=28% Similarity=0.402 Sum_probs=93.0
Q ss_pred CCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccccC-Ccc
Q 039265 332 PQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIAD-PHV 410 (708)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~ 410 (708)
.....+++|.+. |....+...+++|||+||.|+ .|.+.+|..+++.+||.++|++++.......... ...
T Consensus 24 ~~~~~~lv~~g~--------g~~~d~~~~dv~GkIvL~~rg-~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~ 94 (143)
T cd02133 24 LGKTYELVDAGL--------GTPEDFEGKDVKGKIALIQRG-EITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVF 94 (143)
T ss_pred CCcEEEEEEccC--------CchhccCCCCccceEEEEECC-CCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCe
Confidence 356788888653 333445566899999999999 8999999999999999999999887543221111 346
Q ss_pred cceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCC
Q 039265 411 LPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNL 463 (708)
Q Consensus 411 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 463 (708)
+|.+.|+..+|+.|++++++ .++|.|..+.. ..+++.++.||||||+.
T Consensus 95 iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 95 IPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 89999999999999999987 66777777655 46778899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.22 E-value=1.7e-10 Score=105.32 Aligned_cols=122 Identities=49% Similarity=0.808 Sum_probs=96.9
Q ss_pred EEcCCCceeeeeeccCCCCCCCCceeEEEecCC-CCCCCCccCCCCCCCCcccCcEEEeecCCCc-chhhHHHHHHHcCC
Q 039265 312 AKLGNREEFDGESVFQPKDFPQTPLPLVYAGMN-GKPESAFCGNGSLSGIDVKGKVVLCERGGGI-ARIFKGEQVKNAGG 389 (708)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~-~~~~k~~~~~~~ga 389 (708)
++++|+..+.|++++.... ..+++++.... .......|.+......+++|||+||.++ .| .+.+|..+++++||
T Consensus 2 i~LGng~~i~G~sl~~~~~---~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~-~~~~~~~k~~~~~~~GA 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL---KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRG-GNTSRVAKGDAVKAAGG 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC---CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCC-CCccHHHHHHHHHHcCC
Confidence 6789999999999996543 45677663332 2334578988888888999999999999 78 89999999999999
Q ss_pred cEEEEecCCCCCcccccCCcccceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 390 AAMILMNDEPNAFSVIADPHVLPATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 390 ~~~i~~~~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
.|+|++++.............+|.+.|..++|+.|++|+++..+++++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999876543333333467999999999999999999987766544
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=99.05 E-value=3.6e-10 Score=94.76 Aligned_cols=80 Identities=34% Similarity=0.620 Sum_probs=60.6
Q ss_pred eEEEEeCCCCCCCc-ccchhHHHHHHHhccccccC-CCCCCccEEEecceeEEEEEEcCHHHHHHHhcCCCeEEEEecee
Q 039265 5 TYIVSVQQPEGSDL-AESEYVENWHRSFLPYSLES-SDVQQRPFYSYKNVISGFAAKLTEEEVQDMKKKNGFVSARPERK 82 (708)
Q Consensus 5 ~YIV~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~v~~~y~~~~~g~sv~~~~~~i~~L~~~~~V~~V~~~~~ 82 (708)
+|||+||+...... . +.+.+|+.+++.+...+ ...+.++.+.|+..||||++++++++++.|+++|+|++|+||+.
T Consensus 1 ~YIV~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~ 78 (82)
T PF05922_consen 1 RYIVVFKDDASAASSF--SSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQV 78 (82)
T ss_dssp EEEEEE-TTSTHHCHH--HHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECE
T ss_pred CEEEEECCCCCcchhH--HHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCce
Confidence 69999999976555 4 77888888766642111 14688999999999999999999999999999999999999998
Q ss_pred eccc
Q 039265 83 VRLQ 86 (708)
Q Consensus 83 ~~~~ 86 (708)
++++
T Consensus 79 v~l~ 82 (82)
T PF05922_consen 79 VSLH 82 (82)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8763
No 47
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.75 E-value=6.2e-08 Score=86.61 Aligned_cols=89 Identities=22% Similarity=0.337 Sum_probs=71.9
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC-cccc---c----CCcccceEEEcHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA-FSVI---A----DPHVLPATHVSNDA 420 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~-~~~~---~----~~~~~p~~~i~~~~ 420 (708)
.+.|.+.. ...+++|+|+|++|| .|.|.+|..+++++||.++|+||+.... .... . ....||+++|+..+
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG-~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~d 98 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERG-GCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKN 98 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHH
Confidence 46698644 356799999999999 9999999999999999999999876542 1111 1 23479999999999
Q ss_pred HHHHHHHHhcCCCceEEEE
Q 039265 421 GLKIKSYINSTATPMATII 439 (708)
Q Consensus 421 g~~l~~~~~~~~~~~~~i~ 439 (708)
|+.|++.+..+..+++.+.
T Consensus 99 G~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 99 GYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHHcCCceEEeee
Confidence 9999999999888776653
No 48
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.73 E-value=5.7e-08 Score=87.96 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=75.6
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc---c--cCCc
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV---I--ADPH 409 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~---~--~~~~ 409 (708)
.-++++... ...+.|.+..+...+++|||+|+.|+ .|.+.+|..+++++||.++|++|+....... . ....
T Consensus 18 ~~~lv~~~~---~~~~gC~~~~~~~~~~~GkIvLv~rg-~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 18 TAPLVPLDP---ERPAGCDASDYDGLDVKGAIVLVDRG-GCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred EEEEEEcCC---CCccCCCccccCCCCcCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCC
Confidence 345555432 12467988888878999999999999 9999999999999999999999876532111 1 1345
Q ss_pred ccceEEEcHHHHHHHHHHHhcCCCce
Q 039265 410 VLPATHVSNDAGLKIKSYINSTATPM 435 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~~~~~~ 435 (708)
.+|.++|+..+|+.|++++.++.+.+
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~~v~ 119 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGETLE 119 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCCEEE
Confidence 69999999999999999998776543
No 49
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.73 E-value=9.3e-08 Score=84.94 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=72.8
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc--cc--cCCc
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS--VI--ADPH 409 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~--~~--~~~~ 409 (708)
..+|++.... ...|.+..+.+.+++|+|+|++|| .|+|.+|..+++++||.++|++|+...... .. ....
T Consensus 20 ~~~~~~~~~~-----~~gC~~~~~~~~~l~gkIaLV~RG-~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v 93 (120)
T cd02129 20 TLLPLRNLTS-----SVLCSASDVPPGGLKGKAVVVMRG-NCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKI 93 (120)
T ss_pred cceeeecCCC-----cCCCCccccCccccCCeEEEEECC-CcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCC
Confidence 3466665543 356998888888899999999999 999999999999999999999998753111 11 1345
Q ss_pred ccceEEEcHHHHHHHHHHHhc
Q 039265 410 VLPATHVSNDAGLKIKSYINS 430 (708)
Q Consensus 410 ~~p~~~i~~~~g~~l~~~~~~ 430 (708)
.||+++|+..+|+.|++.+..
T Consensus 94 ~IP~v~Is~~dG~~i~~~l~~ 114 (120)
T cd02129 94 DIPVALLSYKDMLDIQQTFGD 114 (120)
T ss_pred cccEEEEeHHHHHHHHHHhcc
Confidence 789999999999999988864
No 50
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.72 E-value=7.4e-08 Score=88.57 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=72.1
Q ss_pred CCccCCCCC--CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc-cc-cc--CCcccceEEEcHHHHH
Q 039265 349 SAFCGNGSL--SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF-SV-IA--DPHVLPATHVSNDAGL 422 (708)
Q Consensus 349 ~~~c~~~~~--~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~-~~-~~--~~~~~p~~~i~~~~g~ 422 (708)
.+.|.+... .+.++.|+|+|++|| .|.|.+|..+++++||.++|+||+...+. .. +. ....+|.++|+..+|+
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG-~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRG-NCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 467988776 567899999999999 99999999999999999999999876221 11 11 2347899999999999
Q ss_pred HHHHHHhcCCCceEE
Q 039265 423 KIKSYINSTATPMAT 437 (708)
Q Consensus 423 ~l~~~~~~~~~~~~~ 437 (708)
.|++++..+.+.+++
T Consensus 123 ~l~~~l~~G~~Vtv~ 137 (138)
T cd02122 123 EILELLERGISVTMV 137 (138)
T ss_pred HHHHHHHcCCcEEEe
Confidence 999999888766554
No 51
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.70 E-value=2.8e-07 Score=83.77 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=74.3
Q ss_pred eeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-cCCcccceE
Q 039265 336 LPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-ADPHVLPAT 414 (708)
Q Consensus 336 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-~~~~~~p~~ 414 (708)
+|++..........+.|.+...+..+++|+|+|++|| .|.|.+|..+++++||.++|+||+........ .+...+|.+
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg-~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~ 106 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRG-TCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAA 106 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECC-CCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeE
Confidence 7776665554556678987766656899999999999 89999999999999999999998865432211 222345555
Q ss_pred EEcHHHHHHHHHHHhcCCCce
Q 039265 415 HVSNDAGLKIKSYINSTATPM 435 (708)
Q Consensus 415 ~i~~~~g~~l~~~~~~~~~~~ 435 (708)
.+ ..+|++|++.++.+...+
T Consensus 107 ~~-~~~G~~l~~~l~~G~~vt 126 (129)
T cd02124 107 VT-PEDGEAWIDALAAGSNVT 126 (129)
T ss_pred Ee-HHHHHHHHHHHhcCCeEE
Confidence 55 999999999998765443
No 52
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.6e-08 Score=105.45 Aligned_cols=291 Identities=20% Similarity=0.186 Sum_probs=173.8
Q ss_pred CCcccccCCCCCccEEEEEcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCceeEeeeecccCCCCCC-CCCCCCCCCC
Q 039265 99 GMGVWKESNFGKGVIIGILDGGINPDHPSFSDEGMPPPPAKWKGRCDFSTCNNKLIGARTFNIEGNVKG-TEPPIDVDGH 177 (708)
Q Consensus 99 ~~~~~~~g~~G~Gv~VaVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~~~~kv~g~~~~~~~~~~~~-~~~~~d~~gH 177 (708)
+...|..+++|+++.|+|.|.|++..||++... ....+.+++....+... -.+......|
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------~~~~~s~d~~~~~~~p~~~~~~~~~~~~ 82 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------YDPLGSYDVNRHDNDPEPRCDGTNENKH 82 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------cCcceeEeeecCCCCcccccCCCCcccc
Confidence 456999999999999999999999999999742 22333444443322221 1222245889
Q ss_pred hHHHHHHhhcCcccCCcccCCCCcceEEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHH-CCCcEEEEccCCCCCC-
Q 039265 178 GTHVAGTAAGAFVKNAESLGNAKGTAAGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIE-DGVDVLSISIGGGSVP- 255 (708)
Q Consensus 178 GThVAGiiag~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~S~G~~~~~- 255 (708)
||-||+-.+..... .--..|+++++++..++++... ..+...+...... .-+++-+.|||.....
T Consensus 83 g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~-----v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 83 GTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC-----VSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred CCCCCcccccccCC--------CcCCCCcccCccccceeeeeee-----cccceecccccCCCCCceeecCcCCcccCCC
Confidence 99999999987411 1123799999999999998643 1122222222222 2478999999964311
Q ss_pred ---CCCCHHHHHHHH-----HHhcCceEEEecCCCCCCCCccc--CCCCceEEEcccccCcceEEEEEcCCCceeeeeec
Q 039265 256 ---FFNDSIAVGSFA-----AIQKGIFVSCAAGNSGPFNSTIS--NEAPWILTVGASTLDRSIVATAKLGNREEFDGESV 325 (708)
Q Consensus 256 ---~~~~~~~~a~~~-----a~~~Gv~vV~AAGN~g~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~~~~~ 325 (708)
........+... ...+|-+.|+|.||.|....... ...+.+.++.-...
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~--------------------- 208 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCA--------------------- 208 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccc---------------------
Confidence 111112222222 23578899999999886543322 11111111111000
Q ss_pred cCCCCCCCCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc
Q 039265 326 FQPKDFPQTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI 405 (708)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~ 405 (708)
..|...+. ..+ .
T Consensus 209 ------------------------~~~~~~p~----y~~---------~------------------------------- 220 (431)
T KOG3525|consen 209 ------------------------TQCGKKPQ----YRE---------R------------------------------- 220 (431)
T ss_pred ------------------------cccCCCcc----ccc---------c-------------------------------
Confidence 00000000 000 0
Q ss_pred cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecceEeCCcCCCccccccCCCCCCCCCCCcCCceeeCCCcEEeeec
Q 039265 406 ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKGTVIGNSLAPTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWF 485 (708)
Q Consensus 406 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~ 485 (708)
-.....+.+|+.+| .. . -|..+.+
T Consensus 221 ------------------------------------------C~~~~~s~~s~~~~-~~--------~-----~~~~~~~ 244 (431)
T KOG3525|consen 221 ------------------------------------------CASCLASTYSSGGP-TE--------E-----CIVCTDP 244 (431)
T ss_pred ------------------------------------------ccccccccccCCCC-cc--------e-----eeeecCC
Confidence 00114456788888 31 1 1111111
Q ss_pred CCCCCCCCCCcceeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHHHHccccccccCCccccccCCCCCCCCccCCCC
Q 039265 486 EPLDFNTNPKSIFNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSALMTTADLLNMNGERIVDETLRPADIFAIGAGH 565 (708)
Q Consensus 486 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G~G~ 565 (708)
. ...-.--.|||.++|+.||+.+|.++++|.++..++..++..++.........+..+.........+|+|+
T Consensus 245 ~--------~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~ 316 (431)
T KOG3525|consen 245 R--------HSCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGL 316 (431)
T ss_pred C--------ccccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccc
Confidence 1 13334457999999999999999999999999999999999998876544444444443344557899999
Q ss_pred CCcCCCCCC
Q 039265 566 VNPSRANDP 574 (708)
Q Consensus 566 vn~~~Al~~ 574 (708)
+|+..-+..
T Consensus 317 ~~~~~~~~~ 325 (431)
T KOG3525|consen 317 LDAKALVSC 325 (431)
T ss_pred cCcchhhhh
Confidence 999876653
No 53
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.61 E-value=3.3e-07 Score=82.54 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=69.7
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc-cccc---CCcccceEEEcHHHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF-SVIA---DPHVLPATHVSNDAGLK 423 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~-~~~~---~~~~~p~~~i~~~~g~~ 423 (708)
....|.+... ..+++|||+||.|+ .|.+.+|..+++++||.++|++++..... .... ....+|++.|+.++|+.
T Consensus 26 ~~~~C~~~~~-~~~v~GkIvL~~rg-~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 26 NTDGCTAFTN-AAAFAGKIALIDRG-TCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred cccccCCCCc-CCCCCCEEEEEECC-CCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 4567988776 34699999999999 89999999999999999999998866421 1111 23479999999999999
Q ss_pred HHHHHhcCCCceE
Q 039265 424 IKSYINSTATPMA 436 (708)
Q Consensus 424 l~~~~~~~~~~~~ 436 (708)
|++|++.+...++
T Consensus 104 l~~~l~~g~~v~v 116 (118)
T cd04818 104 LKAALAAGGTVTV 116 (118)
T ss_pred HHHHHhcCCcEEE
Confidence 9999987765443
No 54
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.60 E-value=4.1e-07 Score=82.49 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=67.9
Q ss_pred CCccCCCCCC--CC----cccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-----------cCCccc
Q 039265 349 SAFCGNGSLS--GI----DVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-----------ADPHVL 411 (708)
Q Consensus 349 ~~~c~~~~~~--~~----~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-----------~~~~~~ 411 (708)
.+.|.+.... +. ...++|+|++|| .|.|.+|..+++++||.++|++|+........ .+...+
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG-~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRG-GCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECC-CcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 4568766542 22 378899999999 99999999999999999999999865321111 123369
Q ss_pred ceEEEcHHHHHHHHHHHhcCCCceEE
Q 039265 412 PATHVSNDAGLKIKSYINSTATPMAT 437 (708)
Q Consensus 412 p~~~i~~~~g~~l~~~~~~~~~~~~~ 437 (708)
|+++|+..+|+.|++.+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999887765543
No 55
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.59 E-value=2.6e-07 Score=83.90 Aligned_cols=86 Identities=21% Similarity=0.343 Sum_probs=68.2
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC------cccc------cCCcccceEEE
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA------FSVI------ADPHVLPATHV 416 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~------~~~~------~~~~~~p~~~i 416 (708)
.+.|.+... +.+++|||+|++|| .|.|.+|..+++++||.++|++|+.... .... .+...||+++|
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG-~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I 104 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERG-DCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFL 104 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECC-CCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEE
Confidence 467976544 55789999999999 9999999999999999999999865432 1111 12357999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 039265 417 SNDAGLKIKSYINSTATPMA 436 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~ 436 (708)
+..+|+.|+++++.+...++
T Consensus 105 ~~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 105 FSKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred EHHHHHHHHHHHHhCCceEE
Confidence 99999999999987765443
No 56
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.58 E-value=1.1e-07 Score=83.05 Aligned_cols=78 Identities=33% Similarity=0.463 Sum_probs=62.5
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCC----CCcccccCCcccceEEEcHHHHHHHH
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEP----NAFSVIADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~----~~~~~~~~~~~~p~~~i~~~~g~~l~ 425 (708)
..|.+......+++|||+||.|+ .|.+.+|..+++++||.++|+++... ...........+|+++|+.++|+.|+
T Consensus 20 ~~~~~~~~~~~~~~gkIvlv~rg-~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 20 GDCCPSDYNGSDVKGKIVLVERG-SCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CHHHHHHTSTSTCTTSEEEEEST-SSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred ccccccccCCccccceEEEEecC-CCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 44666678888999999999999 99999999999999999999999211 11222334678999999999999999
Q ss_pred HHH
Q 039265 426 SYI 428 (708)
Q Consensus 426 ~~~ 428 (708)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
No 57
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.54 E-value=4.3e-07 Score=82.26 Aligned_cols=86 Identities=22% Similarity=0.249 Sum_probs=68.7
Q ss_pred CccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc----ccCCcccceEEEcHHHHHHHH
Q 039265 350 AFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV----IADPHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 350 ~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~----~~~~~~~p~~~i~~~~g~~l~ 425 (708)
..|.+..+ +.+++|||+|++|+ .|.+.+|..+++++||.++|+||+...+... ..+...+|++.|+..+|+.|+
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg-~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~ 109 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERG-ECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALV 109 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHH
Confidence 35876554 35799999999999 9999999999999999999999887432211 112457999999999999999
Q ss_pred HHHhcCCCceEE
Q 039265 426 SYINSTATPMAT 437 (708)
Q Consensus 426 ~~~~~~~~~~~~ 437 (708)
+.++++.+.+++
T Consensus 110 ~~l~~g~~v~~~ 121 (122)
T cd02130 110 AALANGGEVSAN 121 (122)
T ss_pred HHHhcCCcEEEe
Confidence 999888765543
No 58
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.52 E-value=5.1e-07 Score=83.48 Aligned_cols=84 Identities=18% Similarity=0.361 Sum_probs=67.5
Q ss_pred CCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc------cCCcccceEEEcHHHHH
Q 039265 349 SAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI------ADPHVLPATHVSNDAGL 422 (708)
Q Consensus 349 ~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~------~~~~~~p~~~i~~~~g~ 422 (708)
.+.|.+.. .+++|+|+|++|| .|.|.+|..+++++||.++|+||+........ .....||+++|+..+|+
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG-~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~ 123 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERG-ECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGD 123 (139)
T ss_pred ccccCCCC---cccCCeEEEEECC-CCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHH
Confidence 46698654 3789999999999 99999999999999999999998764321111 11357999999999999
Q ss_pred HHHHHHhcCCCceE
Q 039265 423 KIKSYINSTATPMA 436 (708)
Q Consensus 423 ~l~~~~~~~~~~~~ 436 (708)
.|++.+..+...++
T Consensus 124 ~L~~~l~~g~~Vtv 137 (139)
T cd02132 124 ALNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHHcCCcEEE
Confidence 99999988765543
No 59
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.51 E-value=1.3e-06 Score=77.81 Aligned_cols=82 Identities=28% Similarity=0.424 Sum_probs=57.9
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCC--------CC----------e-EEEeecCeEEEccCCcEEEEEEEEEecCC-CCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAP--------QG----------V-VVSVKPSKLYFSKVNQKATYSVTFTRSGS-GYT 681 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~--------~~----------~-~v~v~p~~~~~~~~~~~~~~~v~~~~~~~-~~~ 681 (708)
..+++++|+|.|+...+|++++... .+ . .++..|.+|++++ |++++++|+|+++.. ...
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~a-g~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVPA-GQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE-T-TEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEECC-CCEEEEEEEEEehhcCCcc
Confidence 5788999999999999999998721 11 1 6778899999998 999999999999663 111
Q ss_pred CCceEEEEEEEEc-Cc-eEEEEeEE
Q 039265 682 SGQFAQGYITWVS-AK-YSVRSPIS 704 (708)
Q Consensus 682 ~~~~~~G~i~~~~-~~-~~~~~P~~ 704 (708)
...+++|||.+++ .. ..+++||.
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 2589999999996 34 48999985
No 60
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.49 E-value=5.6e-07 Score=81.92 Aligned_cols=86 Identities=30% Similarity=0.413 Sum_probs=69.7
Q ss_pred CCccCCCC--CCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc--c----cCCcccceEEEcHHH
Q 039265 349 SAFCGNGS--LSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV--I----ADPHVLPATHVSNDA 420 (708)
Q Consensus 349 ~~~c~~~~--~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~--~----~~~~~~p~~~i~~~~ 420 (708)
...|.++. +...+++|||+||.|+ .|.+.+|..+++++||.++|++++....... . .....+|.+.|+..+
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g-~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRG-GCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECC-CcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 45587776 6678899999999999 8999999999999999999999887632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCce
Q 039265 421 GLKIKSYINSTATPM 435 (708)
Q Consensus 421 g~~l~~~~~~~~~~~ 435 (708)
|+.|++++.++.+.+
T Consensus 109 g~~l~~~~~~~~~v~ 123 (126)
T cd00538 109 GEALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHHHhcCCceE
Confidence 999999998765443
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.45 E-value=8.1e-07 Score=81.31 Aligned_cols=73 Identities=25% Similarity=0.375 Sum_probs=60.1
Q ss_pred CCCCcccCcEEEeecCCCcc-----hhhHHHHHHHcCCcEEEEecCCC-CC-cc-cccC---CcccceEEEcHHHHHHHH
Q 039265 357 LSGIDVKGKVVLCERGGGIA-----RIFKGEQVKNAGGAAMILMNDEP-NA-FS-VIAD---PHVLPATHVSNDAGLKIK 425 (708)
Q Consensus 357 ~~~~~~~g~ivl~~~g~~~~-----~~~k~~~~~~~ga~~~i~~~~~~-~~-~~-~~~~---~~~~p~~~i~~~~g~~l~ 425 (708)
+.+.+++|||+|++|| .|. |.+|..+++++||.++|+||+.. .+ .. ...+ ...+|++.|+..+|+.|+
T Consensus 50 ~~~~d~~GkIaLI~RG-~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 50 YICGGMAGKICLIERG-GNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred ccCCCcCccEEEEECC-CCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 4456799999999999 999 99999999999999999999972 22 11 1122 358999999999999999
Q ss_pred HHHhc
Q 039265 426 SYINS 430 (708)
Q Consensus 426 ~~~~~ 430 (708)
+.+..
T Consensus 129 ~~l~~ 133 (139)
T cd04817 129 AALGQ 133 (139)
T ss_pred HHhcC
Confidence 98854
No 62
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.41 E-value=1.3e-06 Score=77.96 Aligned_cols=80 Identities=25% Similarity=0.355 Sum_probs=64.6
Q ss_pred CCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCC-cccc-----cCCcccceEEEcHHHH
Q 039265 348 ESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNA-FSVI-----ADPHVLPATHVSNDAG 421 (708)
Q Consensus 348 ~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~-~~~~-----~~~~~~p~~~i~~~~g 421 (708)
..+.|.+. +..+++|+|+|+.|| .|.|.+|..+++++||.++|++|+.... .... .....+|+++++.++|
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG-~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRG-GCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECC-CCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 35679765 557899999999999 9999999999999999999999876532 1111 1234799999999999
Q ss_pred HHHHHHHhc
Q 039265 422 LKIKSYINS 430 (708)
Q Consensus 422 ~~l~~~~~~ 430 (708)
+.|+.++..
T Consensus 103 ~~L~~l~~~ 111 (117)
T cd04813 103 HLLSSLLPK 111 (117)
T ss_pred HHHHHhccc
Confidence 999888753
No 63
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2e-06 Score=100.96 Aligned_cols=93 Identities=24% Similarity=0.298 Sum_probs=58.0
Q ss_pred EEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC-CcEEEEccCCCC-----CCCCCCHHHHHHHHHHhcCceEEE
Q 039265 204 AGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG-VDVLSISIGGGS-----VPFFNDSIAVGSFAAIQKGIFVSC 277 (708)
Q Consensus 204 ~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g-~dVIn~S~G~~~-----~~~~~~~~~~a~~~a~~~Gv~vV~ 277 (708)
.-+||+|+|..|-+- . .....+..|+.+....= --++-.||+... .+.+-+.+..-...|..+|+.+++
T Consensus 289 ~A~AP~A~I~lvvap--~---~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 289 HAMAPKANIDLVVAP--N---PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hccCccCceEEEEcC--C---CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 689999999998762 1 12222222332222111 134445666421 122334555556678899999999
Q ss_pred ecCCCCCCCCc--------ccCCCCceEEEcc
Q 039265 278 AAGNSGPFNST--------ISNEAPWILTVGA 301 (708)
Q Consensus 278 AAGN~g~~~~~--------~~~~~p~vitVga 301 (708)
|+|.+|....+ +++.+|++.+||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 4578999999998
No 64
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.38 E-value=1.9e-06 Score=81.05 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=68.7
Q ss_pred CCccCCCCCCC---CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcccc-c-----CCcccceEEEcHH
Q 039265 349 SAFCGNGSLSG---IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVI-A-----DPHVLPATHVSND 419 (708)
Q Consensus 349 ~~~c~~~~~~~---~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~-~-----~~~~~p~~~i~~~ 419 (708)
.+.|.+....+ ..+.|+|+|++|| .|.|.+|..+++++||.++|++|+.......+ . ....||+++|+..
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG-~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~ 128 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRG-NCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKS 128 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECC-CCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHH
Confidence 46798766644 7899999999999 99999999999999999999999865422221 1 1358999999999
Q ss_pred HHHHHHHHHhcCCC
Q 039265 420 AGLKIKSYINSTAT 433 (708)
Q Consensus 420 ~g~~l~~~~~~~~~ 433 (708)
+|+.|+.++.....
T Consensus 129 dg~~L~~~l~~~~~ 142 (153)
T cd02123 129 TGEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999987654
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=97.98 E-value=5.4e-05 Score=68.97 Aligned_cols=91 Identities=25% Similarity=0.402 Sum_probs=68.7
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc--chhhHHHHHHHcCCcEEEEecCCCCCccc-----c
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI--ARIFKGEQVKNAGGAAMILMNDEPNAFSV-----I 405 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~--~~~~k~~~~~~~ga~~~i~~~~~~~~~~~-----~ 405 (708)
..+.++++.+... +..+...+++|||+|+.++ .| .+.+|..+++++||.++|++|+....... .
T Consensus 22 ~~~~~lV~~g~G~--------~~d~~~~~v~GkIvlv~~g-~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~ 92 (127)
T cd04819 22 EAKGEPVDAGYGL--------PKDFDGLDLEGKIAVVKRD-DPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGT 92 (127)
T ss_pred CeeEEEEEeCCCC--------HHHcCCCCCCCeEEEEEcC-CCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccc
Confidence 3467788876431 1123356799999999999 77 88999999999999999999865432211 1
Q ss_pred --cCCcccceEEEcHHHHHHHHHHHhcCC
Q 039265 406 --ADPHVLPATHVSNDAGLKIKSYINSTA 432 (708)
Q Consensus 406 --~~~~~~p~~~i~~~~g~~l~~~~~~~~ 432 (708)
.....+|++.|+.++|+.|.+.++.+.
T Consensus 93 ~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 93 EDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999997654
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.41 E-value=0.00053 Score=62.99 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCcccCcEEEeecCCCc------chhhH-------HHHHHHcCCcEEEEecCCC-------CCcccc-cCCcccceEEE
Q 039265 358 SGIDVKGKVVLCERGGGI------ARIFK-------GEQVKNAGGAAMILMNDEP-------NAFSVI-ADPHVLPATHV 416 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~------~~~~k-------~~~~~~~ga~~~i~~~~~~-------~~~~~~-~~~~~~p~~~i 416 (708)
...+++|||+++.++ .| .+..| ...++++||.++|++|... .+.... .....+|++.|
T Consensus 34 ~~~~v~GKIvlv~~~-~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 34 PAGAVKGKIVFFNQP-MVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred chhhcCCeEEEecCC-ccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 456899999999998 99 88888 7999999999999998532 121111 12346999999
Q ss_pred cHHHHHHHHHHHhcCCCceE
Q 039265 417 SNDAGLKIKSYINSTATPMA 436 (708)
Q Consensus 417 ~~~~g~~l~~~~~~~~~~~~ 436 (708)
+.+++..|...++.+..+++
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999987765443
No 67
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.76 E-value=0.035 Score=48.20 Aligned_cols=81 Identities=17% Similarity=0.222 Sum_probs=64.2
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEcCceEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKYSVRS 701 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~ 701 (708)
..+.+++|+|.|..+..|++.......-.++++|..-.+.+ |++.++.|+|.+.... +.+.+.|.+..++..+.+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~P-G~~~~~~V~~~~~~~~----g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAP-GESVELEVTFSPTKPL----GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECC-CCEEEEEEEEEeCCCC----ceEEEEEEEEECCeEEEE
Confidence 67778899999999999998765433455677787777887 9999999999964432 578999999887788888
Q ss_pred eEEEEe
Q 039265 702 PISVRL 707 (708)
Q Consensus 702 P~~~~~ 707 (708)
|+-...
T Consensus 96 ~v~a~~ 101 (102)
T PF14874_consen 96 PVKAEV 101 (102)
T ss_pred EEEEEE
Confidence 887653
No 68
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.65 E-value=0.004 Score=59.70 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=56.7
Q ss_pred CCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCcc------------------c-------------cc-
Q 039265 359 GIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFS------------------V-------------IA- 406 (708)
Q Consensus 359 ~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~------------------~-------------~~- 406 (708)
..+++|||+|++++ .|.+.+|..+++++||+++|+|++..+... . ..
T Consensus 51 gv~v~GkIvLvr~G-~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~ 129 (183)
T cd02128 51 GVSVNGSVVLVRAG-KISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQ 129 (183)
T ss_pred CCCCCCeEEEEECC-CCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCccc
Confidence 45789999999999 899999999999999999999987421100 0 00
Q ss_pred --CCcccceEEEcHHHHHHHHHHHhcC
Q 039265 407 --DPHVLPATHVSNDAGLKIKSYINST 431 (708)
Q Consensus 407 --~~~~~p~~~i~~~~g~~l~~~~~~~ 431 (708)
....||+..|+..+++.|+..+.-.
T Consensus 130 ~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 130 SSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred ccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 1235899999999999999998543
No 69
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.29 E-value=0.016 Score=53.36 Aligned_cols=65 Identities=28% Similarity=0.415 Sum_probs=51.6
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------------chhhHHHHHHHcCCcEEEE
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------------ARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------------~~~~k~~~~~~~ga~~~i~ 394 (708)
....|++|.+..-. ...|....+...|++|||||+.++ .| .+..|..+++++||.++|+
T Consensus 19 ~~~aelVfvGyGi~--a~~~~~dDYag~DVkGKIVlv~~g-~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIK--APELSWDDYAGLDVKGKVVVVLRN-DPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcC--CCCCChhhcCCCCCCCcEEEEEcC-CCCcccccccccccccccccCHHHHHHHHHHCCCcEEEE
Confidence 34678888875432 234777778888999999999988 66 4678999999999999999
Q ss_pred ecCCCC
Q 039265 395 MNDEPN 400 (708)
Q Consensus 395 ~~~~~~ 400 (708)
+++...
T Consensus 96 i~~~~~ 101 (142)
T cd04814 96 VHELAP 101 (142)
T ss_pred EeCCCc
Confidence 998653
No 70
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.23 E-value=0.017 Score=62.07 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=67.2
Q ss_pred CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCc------ccccCCcccceEEEcHHHHHHHHHHHhcC
Q 039265 358 SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAF------SVIADPHVLPATHVSNDAGLKIKSYINST 431 (708)
Q Consensus 358 ~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~------~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 431 (708)
....+++|++++.|| .|.|.+|...++++||.++++.|+..+-. ........||++++.+++++.+.....++
T Consensus 90 ~~~kl~~~~~~v~RG-nC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 90 LQSKLSGKVALVFRG-NCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CCccccceeEEEecc-cceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 345689999999999 99999999999999999999999854322 22233468999999999999999888777
Q ss_pred CCceEEEEec
Q 039265 432 ATPMATIIFK 441 (708)
Q Consensus 432 ~~~~~~i~~~ 441 (708)
.+.++.+-.+
T Consensus 169 ~~V~~~lYaP 178 (541)
T KOG2442|consen 169 DNVELALYAP 178 (541)
T ss_pred CeEEEEEECC
Confidence 7776665443
No 71
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.14 E-value=0.015 Score=53.25 Aligned_cols=64 Identities=30% Similarity=0.455 Sum_probs=50.4
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------chhhHHHHHHHcCCcEEEEecCCCC
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------ARIFKGEQVKNAGGAAMILMNDEPN 400 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------~~~~k~~~~~~~ga~~~i~~~~~~~ 400 (708)
.+-+++|.+.... ...|....+...+++|||||+.++ .| .+..|..++.++||.++|++++...
T Consensus 22 v~gelVfvGyG~~--~~~~~~~Dy~~iDVkGKIVlv~~g-~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLV--APELGHDDYAGLDVKGKIVVVLSG-GPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcC--ccCcCHhhccCCCCCCeEEEEEcC-CCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 4567888775432 245776677788999999999998 65 3678999999999999999998554
No 72
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.88 E-value=0.023 Score=52.95 Aligned_cols=65 Identities=31% Similarity=0.488 Sum_probs=49.8
Q ss_pred CceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCC-----------------CcchhhHHHHHHHcCCcEEEEec
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGG-----------------GIARIFKGEQVKNAGGAAMILMN 396 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~-----------------~~~~~~k~~~~~~~ga~~~i~~~ 396 (708)
.+-+++|.+.... ...|....+...+++|||||+.++. .|.+..|..++.++||+++|+|+
T Consensus 20 vtg~lVfvGyGi~--~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~ 97 (151)
T cd04822 20 VTAPVVFAGYGIT--APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVN 97 (151)
T ss_pred ceEeEEEecCCcC--ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEe
Confidence 3567788775432 2447666677889999999998762 16778999999999999999998
Q ss_pred CCCC
Q 039265 397 DEPN 400 (708)
Q Consensus 397 ~~~~ 400 (708)
+...
T Consensus 98 d~~~ 101 (151)
T cd04822 98 GPNS 101 (151)
T ss_pred CCcc
Confidence 8644
No 73
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.63 E-value=0.028 Score=55.82 Aligned_cols=56 Identities=38% Similarity=0.562 Sum_probs=44.0
Q ss_pred CceeEEEecCCCCCCCCccCCCCC-----CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCC
Q 039265 334 TPLPLVYAGMNGKPESAFCGNGSL-----SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDE 398 (708)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~ 398 (708)
.+-+++|.+. |....+ ...+++|||+|+.++ .+.+.+|..+++.+||+++|+|++.
T Consensus 45 v~g~lVyvny--------G~~~D~~~L~~~gvdv~GKIvLvr~G-~~~~~~Kv~~A~~~GA~gVIiy~Dp 105 (220)
T cd02121 45 VTAELVYANY--------GSPEDFEYLEDLGIDVKGKIVIARYG-GIFRGLKVKNAQLAGAVGVIIYSDP 105 (220)
T ss_pred ceEEEEEcCC--------CcHHHHHHHhhcCCCCCCeEEEEECC-CccHHHHHHHHHHcCCEEEEEEeCc
Confidence 3567777763 322222 256799999999998 8888899999999999999999764
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.84 E-value=0.17 Score=41.61 Aligned_cols=58 Identities=26% Similarity=0.340 Sum_probs=37.1
Q ss_pred ceEEEEEEEecCCCc-eeEEEEEeCCCCeEEEeecCeEE-EccCCcEEEEEEEEEecCCCC
Q 039265 622 AQTFTRTVTNVGQVY-SSYAVNVVAPQGVVVSVKPSKLY-FSKVNQKATYSVTFTRSGSGY 680 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~-~ty~~~~~~~~~~~v~v~p~~~~-~~~~~~~~~~~v~~~~~~~~~ 680 (708)
..+++++|+|.|... ...++++..|.|-.+...|..+. +++ |++++++++|+++....
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~p-G~s~~~~~~V~vp~~a~ 65 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPP-GESVTVTFTVTVPADAA 65 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-T-TSEEEEEEEEEE-TT--
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCC-CCEEEEEEEEECCCCCC
Confidence 678889999999765 45788889999988777888775 555 99999999999987544
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=94.27 E-value=0.055 Score=49.85 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=36.4
Q ss_pred CcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCC
Q 039265 360 IDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPN 400 (708)
Q Consensus 360 ~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~ 400 (708)
.+++|||+|++.| ...+..|..+++..||.|+|+|.+..+
T Consensus 37 V~v~GkIvi~RyG-~~~RG~Kv~~A~~~GA~GviIYsDP~d 76 (153)
T cd02131 37 MNVTNQIALLKLG-QAPLLYKLSLLEEAGFGGVLLYVDPCD 76 (153)
T ss_pred CCccceEEEEecc-CcchHHHHHHHHHCCCeEEEEecChhh
Confidence 5799999999999 788999999999999999999988543
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.26 E-value=0.054 Score=49.30 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=73.9
Q ss_pred ceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccc------c---
Q 039265 335 PLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSV------I--- 405 (708)
Q Consensus 335 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~------~--- 405 (708)
.++++... ...+|... .+.-+..+.++|++|| .|+|..|..++.++||.++|+.++....... +
T Consensus 65 ~~~lV~ad-----Pp~aC~el-rN~~f~~d~vaL~eRG-eCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 65 NLELVLAD-----PPHACEEL-RNEIFAPDSVALMERG-ECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred CcceeecC-----ChhHHHHH-hhcccCCCcEEEEecC-CceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcc
Confidence 45555543 35668542 3455678899999999 9999999999999999999998765543322 1
Q ss_pred -cCCcccceEEEcHHHHHHHHHHHhcCCCceEEEEecc
Q 039265 406 -ADPHVLPATHVSNDAGLKIKSYINSTATPMATIIFKG 442 (708)
Q Consensus 406 -~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 442 (708)
.+...+|++++-..+|..++.-++....+-+.|..+-
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 1346899999999999877777776666666666554
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=93.02 E-value=2.4 Score=37.79 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=41.8
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSG 679 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~ 679 (708)
.-.+++.|.|....+.+|++++..++++.+......+++.+ |++.++.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~~-g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVPP-GETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE-T-T-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEECC-CCEEEEEEEEEECHHH
Confidence 56788899999999999999999988999866568999988 9999999999987764
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.39 Score=50.63 Aligned_cols=80 Identities=21% Similarity=0.125 Sum_probs=61.7
Q ss_pred CccCCCCC---CCCcccCcEEEeecCCCcchhhHHHHHHHcCCcEEEEecCCCCCccccc----CCcccceEEEcHHHHH
Q 039265 350 AFCGNGSL---SGIDVKGKVVLCERGGGIARIFKGEQVKNAGGAAMILMNDEPNAFSVIA----DPHVLPATHVSNDAGL 422 (708)
Q Consensus 350 ~~c~~~~~---~~~~~~g~ivl~~~g~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~----~~~~~p~~~i~~~~g~ 422 (708)
++|.+... ........++|+.|| .|.|.+|..+++.+|..++|+||+......... ....++.++++...|+
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg-~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge 141 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRG-GCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGE 141 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEcc-CCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHH
Confidence 45654433 134467789999999 899999999999999999999998766543332 2457889999999999
Q ss_pred HHHHHHhc
Q 039265 423 KIKSYINS 430 (708)
Q Consensus 423 ~l~~~~~~ 430 (708)
.|..|...
T Consensus 142 ~l~~~~~~ 149 (348)
T KOG4628|consen 142 LLSSYAGR 149 (348)
T ss_pred HHHHhhcc
Confidence 99887543
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=90.84 E-value=1.8 Score=38.88 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=52.3
Q ss_pred CceEEEEEEEecCCCceeEEEEEeCC----CC--------------e------EEEeecCeEEEccCCcEEEEEEEEEec
Q 039265 621 PAQTFTRTVTNVGQVYSSYAVNVVAP----QG--------------V------VVSVKPSKLYFSKVNQKATYSVTFTRS 676 (708)
Q Consensus 621 ~~~~~~~tv~n~g~~~~ty~~~~~~~----~~--------------~------~v~v~p~~~~~~~~~~~~~~~v~~~~~ 676 (708)
..+++++.|+|.+++..+|.+.+... .| + -|++ |..+++++ +++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~~-~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLPP-NESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEECC-CCEEEEEEEEEcC
Confidence 38899999999999999999887521 11 0 1222 55599988 9999999999998
Q ss_pred CCCCCCCceEEEEEEEE
Q 039265 677 GSGYTSGQFAQGYITWV 693 (708)
Q Consensus 677 ~~~~~~~~~~~G~i~~~ 693 (708)
...- .+.+-|.|.++
T Consensus 105 ~~~f--~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAF--DGIILGGIYFS 119 (121)
T ss_pred CCCc--CCEEEeeEEEE
Confidence 8755 37888888775
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.62 E-value=1.9 Score=40.52 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=43.8
Q ss_pred CCceeEEEecCCCCCCCCccCCCCCCCCcccCcEEEeecCCCc------------------chhhHHHHHHHcCCcEEEE
Q 039265 333 QTPLPLVYAGMNGKPESAFCGNGSLSGIDVKGKVVLCERGGGI------------------ARIFKGEQVKNAGGAAMIL 394 (708)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g~ivl~~~g~~~------------------~~~~k~~~~~~~ga~~~i~ 394 (708)
....++||.+..-..... .-.++...|++|||||+..++.. ....|...++++||.++|+
T Consensus 21 ~~~~elVFvGyGi~ape~--~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~ 98 (157)
T cd04821 21 LKDSPLVFVGYGIVAPEY--GWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALI 98 (157)
T ss_pred cccCCEEEeccCccCccc--CcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEE
Confidence 345678887755322111 11256678999999999876210 1224999999999999999
Q ss_pred ecCCC
Q 039265 395 MNDEP 399 (708)
Q Consensus 395 ~~~~~ 399 (708)
+.+..
T Consensus 99 v~~~~ 103 (157)
T cd04821 99 VHETE 103 (157)
T ss_pred EeCCC
Confidence 97743
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.43 E-value=4.6 Score=44.00 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=63.1
Q ss_pred ceEEEEEEEecCCCcee-EEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc----Cc
Q 039265 622 AQTFTRTVTNVGQVYSS-YAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS----AK 696 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~t-y~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~----~~ 696 (708)
.++....+.|.|+.+.| -++++..|.|-.+.|.|.++---+++++.++++|++.+....+ +-|+=+|+-++ ..
T Consensus 398 e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~a--GdY~i~i~~ksDq~s~e 475 (513)
T COG1470 398 EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGA--GDYRITITAKSDQASSE 475 (513)
T ss_pred cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCC--CcEEEEEEEeecccccc
Confidence 88899999999988766 5799999999999999997765556999999999999887663 66776777664 24
Q ss_pred eEEEEeE
Q 039265 697 YSVRSPI 703 (708)
Q Consensus 697 ~~~~~P~ 703 (708)
.++|+-+
T Consensus 476 ~tlrV~V 482 (513)
T COG1470 476 DTLRVVV 482 (513)
T ss_pred ceEEEEE
Confidence 5566543
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=85.06 E-value=9.4 Score=34.10 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=48.0
Q ss_pred ceEEEEEEEecCCCceeEEEEEeC---CCC----eEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVA---PQG----VVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV 693 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~---~~~----~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~ 693 (708)
..+.+++|+|.++.+..+.+.+.. ... -.+-++|..+.+.+ |+++++.| +.....+. +.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~p-g~~q~vRv-~~~~~~~~--~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLEP-GESQTVRV-YRGSKLPI--DRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEET-TEEEEEEE-EECSGS-S--SS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeCC-CCcEEEEE-EecCCCCC--CceEEEEEEEE
Confidence 567788999999988888888774 111 24678999999998 99999999 77544333 23444455554
No 83
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=82.72 E-value=8 Score=33.58 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=42.1
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
.....++|+|.++...-|++....|.... |.|..-.+.+ |+++++.|++.+...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i~p-~~~~~i~I~~~~~~~ 72 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGIIEP-GESVEITITFQPFDF 72 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE-T-TEEEEEEEEE-SSST
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEECC-CCEEEEEEEEEeccc
Confidence 57778899999999999999988888765 5699888888 999999999998543
No 84
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=1 Score=52.51 Aligned_cols=24 Identities=42% Similarity=0.812 Sum_probs=22.3
Q ss_pred CCCCCccEEEEEcCCCCCCCCCCC
Q 039265 106 SNFGKGVIIGILDGGINPDHPSFS 129 (708)
Q Consensus 106 g~~G~Gv~VaVIDtGid~~Hp~f~ 129 (708)
.|.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999999886
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=80.85 E-value=19 Score=39.49 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred ceEEEEEEEecCCCceeEEEEEe-CCCCeEEEeec-----CeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEc
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVV-APQGVVVSVKP-----SKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVS 694 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~-~~~~~~v~v~p-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~ 694 (708)
+..|++++.|.|..+.+|.+++. .|.+.+..+.- .++.+.+ |+++.++|.+.++..... +.|.=.|+-++
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~-gE~kdvtleV~ps~na~p--G~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKP-GEEKDVTLEVYPSLNATP--GTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecC-CCceEEEEEEecCCCCCC--CceeEEEEEec
Confidence 77899999999999999999999 68876665543 3567777 999999999999875442 44444444444
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=77.62 E-value=8.8 Score=42.47 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=48.3
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
.-.+++.+.|.+..+.+|+++++..++..+...+..+++++ |++.++.|.+..+..
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~~-g~~~~~~v~v~~~~~ 402 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVKA-GEKVKLPVFLRTPPD 402 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEECC-CCEEEEEEEEEechh
Confidence 56778899999999999999999998988877655899988 999999999988754
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=73.02 E-value=33 Score=31.44 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=51.2
Q ss_pred ceEEEEEEEecCCCc-eeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEE
Q 039265 622 AQTFTRTVTNVGQVY-SSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWV 693 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~-~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~ 693 (708)
...+.+.+-|..... ...++......++++--.|..+++.| ++.++++.+|+..+... ++.||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~P-~~~~~i~~~iKVsStet---GvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLAP-HGFARIKATIKVSSTET---GVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeCC-CcEEEEEEEEEEEeccC---CEEEEEEEEe
Confidence 445555667765432 33445555567788888899999998 99999999999987776 8999999985
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=62.02 E-value=24 Score=28.93 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=30.8
Q ss_pred EEEeecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEEEEEcCce
Q 039265 650 VVSVKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYITWVSAKY 697 (708)
Q Consensus 650 ~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i~~~~~~~ 697 (708)
.++|.|..+++.. |+++.|++++.+.... . ...+.|++...
T Consensus 4 ~i~i~p~~~~l~~-G~~~~l~a~~~~~~~~-----~-~~~v~w~Ssn~ 44 (81)
T smart00635 4 SVTVTPTTASVKK-GLTLQLTATVTPSSAK-----V-TGKVTWTSSNP 44 (81)
T ss_pred EEEEeCCeeEEeC-CCeEEEEEEEECCCCC-----c-cceEEEEECCC
Confidence 5678899999987 9999999998764432 2 56688886543
No 89
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=56.78 E-value=46 Score=23.92 Aligned_cols=44 Identities=16% Similarity=0.039 Sum_probs=26.6
Q ss_pred EEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEE
Q 039265 627 RTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTF 673 (708)
Q Consensus 627 ~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~ 673 (708)
++++|.|+.+....-....-.=..+ +.+.-.+.+ |++..++|+|
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~--~~~~~~i~P-Ges~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTA--EYSKKPIAP-GESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEe--eCCcceECC-CCEEEEEEEC
Confidence 5889999876653322222223333 344445666 9999998875
No 90
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=54.71 E-value=58 Score=28.20 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=37.1
Q ss_pred ceEEEEEEEecCCCc-eeEEEEE-----eCCCCe---EEEeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 622 AQTFTRTVTNVGQVY-SSYAVNV-----VAPQGV---VVSVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~-~ty~~~~-----~~~~~~---~v~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
..++.++++|..+.. .+-++.. .. .|+ .....-..+++.+ +++.+++++|.+..-
T Consensus 16 d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l~p-~~~~~~~~~i~p~~y 79 (107)
T PF00927_consen 16 DFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTLKP-GETKSVEVTITPSQY 79 (107)
T ss_dssp EEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE-T-TEEEEEEEEE-HHSH
T ss_pred CEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceeeCC-CCEEEEEEEEEceeE
Confidence 678888999999887 5533333 33 455 3566777888888 999999999998653
No 91
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=50.69 E-value=77 Score=26.48 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=31.5
Q ss_pred ceEEEEEEEecCCCc-eeEEEEEeCCCCeEEEeecCeE-EEccCCcEEEEEEEEEec
Q 039265 622 AQTFTRTVTNVGQVY-SSYAVNVVAPQGVVVSVKPSKL-YFSKVNQKATYSVTFTRS 676 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~-~ty~~~~~~~~~~~v~v~p~~~-~~~~~~~~~~~~v~~~~~ 676 (708)
..+++.+|+|.|... ..+.+.+-.. +..+ .-..+ .+.+ |++.++++++..+
T Consensus 20 ~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L~~-g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 20 PVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSLAP-GESETVTFTWTPP 72 (101)
T ss_dssp EEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB-T-TEEEEEEEEEE-S
T ss_pred EEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCcCC-CcEEEEEEEEEeC
Confidence 788899999999864 4455555433 3332 22222 5666 9999999999987
No 92
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.91 E-value=75 Score=26.29 Aligned_cols=55 Identities=24% Similarity=0.208 Sum_probs=26.3
Q ss_pred eEEEEEEEecCCCcee--------EEEEEeCCCCeEE---------EeecCeEEEccCCcEEEEEEEEEecCC
Q 039265 623 QTFTRTVTNVGQVYSS--------YAVNVVAPQGVVV---------SVKPSKLYFSKVNQKATYSVTFTRSGS 678 (708)
Q Consensus 623 ~~~~~tv~n~g~~~~t--------y~~~~~~~~~~~v---------~v~p~~~~~~~~~~~~~~~v~~~~~~~ 678 (708)
..++++|+|.++.+.+ |.+.+..+.|-.| +-.-...++.+ |++++|+.++.....
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~p-Ge~~~~~~~~~~~~~ 73 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEP-GESLTYEETWDLKDL 73 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-T-T-EEEEEEEESS---
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECC-CCEEEEEEEECCCCC
Confidence 3566777787765433 3344443433222 22234567777 999999998887553
No 93
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=48.65 E-value=70 Score=26.73 Aligned_cols=47 Identities=15% Similarity=0.135 Sum_probs=33.8
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCCCeEEEeecCeEEEccCCcEEEEEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQGVVVSVKPSKLYFSKVNQKATYSVTF 673 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~~~~v~v~p~~~~~~~~~~~~~~~v~~ 673 (708)
...+.+++.|.|....++++.-..-. .-.|.++++.+ |++.++.+.+
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v~a-g~~~~~~w~l 65 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTVAA-GQTVSLTWPL 65 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEECC-CCEEEEEEee
Confidence 45788899999988887776652211 12477888888 8888877766
No 94
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=37.84 E-value=15 Score=16.34 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.1
Q ss_pred cccCCC
Q 039265 455 SFSSRG 460 (708)
Q Consensus 455 ~fSs~G 460 (708)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 95
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=35.75 E-value=30 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=18.9
Q ss_pred HHHHHhcCCCCCHHHHHHHHHccc
Q 039265 515 AALLKSSHPYWSPAAIKSALMTTA 538 (708)
Q Consensus 515 aALl~q~~p~~s~~~vk~~L~~TA 538 (708)
+--|++.+|++++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345789999999999999997653
No 96
>PRK15019 CsdA-binding activator; Provisional
Probab=31.08 E-value=43 Score=31.18 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=28.2
Q ss_pred eeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039265 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKS 532 (708)
Q Consensus 498 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~ 532 (708)
-..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34445555 67999999999999999999999876
No 97
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=30.95 E-value=1.9e+02 Score=30.45 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=14.1
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAP 646 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~ 646 (708)
...++++|+|..+.+.+-.+....|
T Consensus 243 ~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 243 TYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEECCCCCCEEEEEEeCCC
Confidence 3555566777766655544444444
No 98
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.61 E-value=94 Score=37.44 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=33.8
Q ss_pred ceEEEEEEEecCCCceeEEEE--EeCCCC-e----EEEeecCeEEEccCCcEEEEEEEEEe
Q 039265 622 AQTFTRTVTNVGQVYSSYAVN--VVAPQG-V----VVSVKPSKLYFSKVNQKATYSVTFTR 675 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~--~~~~~~-~----~v~v~p~~~~~~~~~~~~~~~v~~~~ 675 (708)
..+++++|+|+|+.+..-.+. +..|.+ + .--+--.++.+.+ ||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~~-Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTAS-GRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeCC-CCEEEEEEEeCc
Confidence 467889999999866554444 333422 1 1111134566766 999999999986
No 99
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.59 E-value=44 Score=22.35 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHH
Q 039265 506 MACPHLSGIAALL 518 (708)
Q Consensus 506 mAaP~VAG~aALl 518 (708)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999997754
No 100
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=30.18 E-value=2.7e+02 Score=24.33 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=34.3
Q ss_pred EEec-CCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCCCcEEEEccCC
Q 039265 204 AGMA-PYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDGVDVLSISIGG 251 (708)
Q Consensus 204 ~GvA-P~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S~G~ 251 (708)
.+.. ++++|+.+ +.++ ||....++.-++++.+.|+++|-+|--.
T Consensus 31 ~~y~~~~~elvgf--~~Cg--GCpg~~~~~~~~~l~~~~~d~IHlssC~ 75 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCG--GCPGRKLVRRIKKLKKNGADVIHLSSCM 75 (107)
T ss_pred ccCCCCCeEEEEE--eeCC--CCChhHHHHHHHHHHHCCCCEEEEcCCE
Confidence 4444 46777775 4445 7888899999999999999999998764
No 101
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=29.64 E-value=2.6e+02 Score=28.28 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=38.0
Q ss_pred ceEEEEEEEecCCCceeEEEEEe---CC---CC----------eEEEeecCeEEEccCCcEEEEEEEEEec
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVV---AP---QG----------VVVSVKPSKLYFSKVNQKATYSVTFTRS 676 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~---~~---~~----------~~v~v~p~~~~~~~~~~~~~~~v~~~~~ 676 (708)
.....++|.|.|+....+++.+. .| .+ -.+-++|..+++++ |+++.+.|.-...
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L~p-g~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFALPA-GTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEECC-CCeEEEEEEEcCC
Confidence 44556789999998877777653 22 11 24667899999998 8888877665543
No 102
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=29.23 E-value=48 Score=30.48 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=28.8
Q ss_pred eeeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039265 498 FNIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSA 533 (708)
Q Consensus 498 y~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~ 533 (708)
-..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 34455666 589999999999999999999998743
No 103
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=28.90 E-value=1.8e+02 Score=35.13 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=34.9
Q ss_pred ceEEEEEEEecCCCceeEEEE--EeCCCCeEEEeec-------CeEEEccCCcEEEEEEEEEecC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVN--VVAPQGVVVSVKP-------SKLYFSKVNQKATYSVTFTRSG 677 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~--~~~~~~~~v~v~p-------~~~~~~~~~~~~~~~v~~~~~~ 677 (708)
..+++++|+|+|+.+..-.+. +..|.+- + ..| .++.+++ ||+++++++++...
T Consensus 668 ~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L~p-Ges~~V~~~l~~~~ 729 (765)
T PRK15098 668 KVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIMLKP-GETQTVSFPIDIEA 729 (765)
T ss_pred eEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeECC-CCeEEEEEeecHHH
Confidence 678889999999865433333 3334321 1 123 3566777 99999999999754
No 104
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=28.80 E-value=1.8e+02 Score=21.75 Aligned_cols=38 Identities=29% Similarity=0.370 Sum_probs=24.9
Q ss_pred CceEEEEEEEecCCCcee-EEEEEeCCCCeEEEeecCeEEE
Q 039265 621 PAQTFTRTVTNVGQVYSS-YAVNVVAPQGVVVSVKPSKLYF 660 (708)
Q Consensus 621 ~~~~~~~tv~n~g~~~~t-y~~~~~~~~~~~v~v~p~~~~~ 660 (708)
...+++++++|.|....+ ..++-..|.|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 378999999999987654 3444445666543 3555544
No 105
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=27.80 E-value=89 Score=33.75 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=41.3
Q ss_pred CCccccccCCCCCCCCCCCcCCceeeCCCcEEeeecCCCCCCCCCCcceeeccchhhhHHHHHHHHHHH
Q 039265 450 APTVVSFSSRGPNLASPGILKPDIIGPGLSILAAWFEPLDFNTNPKSIFNIMSGTSMACPHLSGIAALL 518 (708)
Q Consensus 450 ~~~~a~fSs~Gp~~~~~g~~KPDI~APG~~I~sa~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 518 (708)
++.......-||+. -.-||+.+||+...|+.+.+.-..... .-+=|=.++|.+|.++|+.
T Consensus 354 AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GRqG~-----~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 354 AGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGRQGS-----PGARTYLASPAMAAAAAVE 413 (423)
T ss_pred cCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCccCCC-----CCCeEEecCHHHHHHHHhh
Confidence 44566667788987 357899999999999987644111110 1122446999999999985
No 106
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.68 E-value=57 Score=30.00 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=27.7
Q ss_pred eeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039265 499 NIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKS 532 (708)
Q Consensus 499 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~ 532 (708)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4445666 68999999999999999999999865
No 107
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.52 E-value=4.8e+02 Score=25.16 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=35.2
Q ss_pred ceEEEEEEEecCCCceeEEEEEeC---C-CCeEEEee--cCe-EEEccCCcEEEEEEEEEecC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVA---P-QGVVVSVK--PSK-LYFSKVNQKATYSVTFTRSG 677 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~---~-~~~~v~v~--p~~-~~~~~~~~~~~~~v~~~~~~ 677 (708)
..+++.+|.|.|+.+. |.+++.. | +.+++.-- ..+ =++++ |+..+.++++++..
T Consensus 39 ~v~V~~~iyN~G~~~A-~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~p-g~~vsh~~vv~p~~ 99 (181)
T PF05753_consen 39 DVTVTYTIYNVGSSAA-YDVKLTDDSFPPEDFELVSGSLSASWERIPP-GENVSHSYVVRPKK 99 (181)
T ss_pred EEEEEEEEEECCCCeE-EEEEEECCCCCccccEeccCceEEEEEEECC-CCeEEEEEEEeeee
Confidence 7889999999999744 7777765 2 34443100 111 13455 88888888888865
No 108
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=26.36 E-value=1.6e+02 Score=23.58 Aligned_cols=30 Identities=33% Similarity=0.442 Sum_probs=20.8
Q ss_pred ceEEEEEEEecCCCcee-EEEEEeCCCCeEE
Q 039265 622 AQTFTRTVTNVGQVYSS-YAVNVVAPQGVVV 651 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~t-y~~~~~~~~~~~v 651 (708)
..+++++++|.|..... .++.-..|.|+.+
T Consensus 42 ~v~ytitvtN~G~~~a~nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 42 TVTYTITVTNTGPAPATNVVVTDTLPAGLTF 72 (76)
T ss_pred EEEEEEEEEECCCCeeEeEEEEEcCCCCCEE
Confidence 88999999999987643 4444445666543
No 109
>PRK15233 putative fimbrial chaperone protein SefB; Provisional
Probab=25.14 E-value=3.3e+02 Score=27.70 Aligned_cols=57 Identities=16% Similarity=0.027 Sum_probs=38.0
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCC---CeEEEeecCeEEEccCCcEEEEEEEEEecCCC
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQ---GVVVSVKPSKLYFSKVNQKATYSVTFTRSGSG 679 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~---~~~v~v~p~~~~~~~~~~~~~~~v~~~~~~~~ 679 (708)
.+..+++|.|.++.+.--+..+.... ...+-|+|.-+++.+ ++.+++.|.......+
T Consensus 55 ~~~~sl~i~N~~~~p~LvQsWvd~~~~~~~~pFiVtPPLfRLep-~~~~~lRIi~~~~~LP 114 (246)
T PRK15233 55 APSTSFWIMNEKEYPILVQTQVYNDDKSSKAPFIVTPPILKVES-NARTRLKVIPTSNLFN 114 (246)
T ss_pred CcEEEEEEEcCCCCcEEEEEEEecCCCCccCCEEECCCeEEECC-CCceEEEEEECCCCCC
Confidence 67788899997654322223333221 234678899999998 9999999888754444
No 110
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=25.04 E-value=89 Score=22.05 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHccc
Q 039265 514 IAALLKSSHPYWSPAAIKSALMTTA 538 (708)
Q Consensus 514 ~aALl~q~~p~~s~~~vk~~L~~TA 538 (708)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567889999999999999998543
No 111
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=24.51 E-value=63 Score=29.79 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=25.9
Q ss_pred eeccchhhhHHHHHHHHHHHHhcCCCCCHHHHHH
Q 039265 499 NIMSGTSMACPHLSGIAALLKSSHPYWSPAAIKS 532 (708)
Q Consensus 499 ~~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~ 532 (708)
..+.|=| =|++|.|.+|+++..+-..+|++|.+
T Consensus 72 ~~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 72 LHFFGDS-DARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred EEEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3344444 36999999999999999999998743
No 112
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.94 E-value=69 Score=28.88 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=26.1
Q ss_pred eccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 039265 500 IMSGTSMACPHLSGIAALLKSSHPYWSPAAIKSA 533 (708)
Q Consensus 500 ~~sGTSmAaP~VAG~aALl~q~~p~~s~~~vk~~ 533 (708)
.+.|.|= |+.|-|++|||.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4555554 67999999999999999999998654
No 113
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=23.76 E-value=62 Score=24.53 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=22.7
Q ss_pred cceeeccchhhhHHHHHHHH------HHHHhcCCCCCHHHHHHHHH
Q 039265 496 SIFNIMSGTSMACPHLSGIA------ALLKSSHPYWSPAAIKSALM 535 (708)
Q Consensus 496 ~~y~~~sGTSmAaP~VAG~a------ALl~q~~p~~s~~~vk~~L~ 535 (708)
++--.+.||=+..=.|.... .-+++.||+++.++|+++|.
T Consensus 9 ~G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 9 GGQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp GG--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CCcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34445566666555554442 22466799999999999884
No 114
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=23.57 E-value=5.4e+02 Score=23.04 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=45.5
Q ss_pred ceEEEEEEEecCCCceeE----EEEEeCCCCe----EEE---eecCeEEEccCCcEEEEEEEEEecCCCCCCCceEEEEE
Q 039265 622 AQTFTRTVTNVGQVYSSY----AVNVVAPQGV----VVS---VKPSKLYFSKVNQKATYSVTFTRSGSGYTSGQFAQGYI 690 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty----~~~~~~~~~~----~v~---v~p~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~G~i 690 (708)
...+.++++|.|+.+=+. .+......|. .+. -.+..+++.+ |++..+.|+...............-.|
T Consensus 19 ~~~~~l~~tN~s~~~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~P-G~sA~a~l~~~~~~~~~~~~~~~~~~l 97 (131)
T PF14016_consen 19 QRHATLTFTNTSDTPCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAP-GGSAYAGLRWSNVGSGGGCKPVTPAGL 97 (131)
T ss_pred ccEEEEEEEECCCCcEEeccCCcEEEECCCCCcCCccccccCCCCCcEEECC-CCEEEEEEEEecCCCCCCcCccccCEE
Confidence 568888999998763221 1222222222 111 1366789987 999999999998665431002222334
Q ss_pred EEE--cCceEEEEeE
Q 039265 691 TWV--SAKYSVRSPI 703 (708)
Q Consensus 691 ~~~--~~~~~~~~P~ 703 (708)
.+. ++...+.+|+
T Consensus 98 ~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 98 TVTPPGGTAPVTVPW 112 (131)
T ss_pred EEECCCCCccEEEeC
Confidence 444 4555555554
No 115
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=21.88 E-value=2.9e+02 Score=30.64 Aligned_cols=76 Identities=25% Similarity=0.412 Sum_probs=54.2
Q ss_pred EEecCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC-CcEEEEccCCCC---CCCC-CCHHHHHHHHHHhcCceEEEe
Q 039265 204 AGMAPYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG-VDVLSISIGGGS---VPFF-NDSIAVGSFAAIQKGIFVSCA 278 (708)
Q Consensus 204 ~GvAP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g-~dVIn~S~G~~~---~~~~-~~~~~~a~~~a~~~Gv~vV~A 278 (708)
+-=.|.++++.|-+.=.+ ......|++||+.|-+.+ +|||=.-=||++ -+.+ ++.+..| ..+..+.||.|
T Consensus 157 ~rR~P~~~viv~pt~VQG--~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRA---i~~s~iPvISA 231 (440)
T COG1570 157 SRRFPSVEVIVYPTLVQG--EGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARA---IAASRIPVISA 231 (440)
T ss_pred HhhCCCCeEEEEeccccC--CCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHH---HHhCCCCeEee
Confidence 344688888888775443 367788999999999887 999999999875 2233 3444433 34677899999
Q ss_pred cCCCCC
Q 039265 279 AGNSGP 284 (708)
Q Consensus 279 AGN~g~ 284 (708)
-|-+-.
T Consensus 232 VGHEtD 237 (440)
T COG1570 232 VGHETD 237 (440)
T ss_pred cccCCC
Confidence 997643
No 116
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=20.69 E-value=4.2e+02 Score=23.01 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=30.1
Q ss_pred ceEEEEEEEecCCCceeEE---EEEeCCCCeEEEee---------cCeEEEccCCcEEEEEEEEEecCCCC
Q 039265 622 AQTFTRTVTNVGQVYSSYA---VNVVAPQGVVVSVK---------PSKLYFSKVNQKATYSVTFTRSGSGY 680 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~---~~~~~~~~~~v~v~---------p~~~~~~~~~~~~~~~v~~~~~~~~~ 680 (708)
-..+.++|+|.++++..+. +.+....|-..... ...-++.+ |++.+..|-|..+....
T Consensus 37 fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i~p-G~~~~g~l~F~vp~~~~ 106 (123)
T PF11611_consen 37 FVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETIKP-GESVTGKLVFEVPKDDK 106 (123)
T ss_dssp EEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE-T-T-EEEEEEEEEESTT-G
T ss_pred EEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEECC-CCEEEEEEEEEECCCCc
Confidence 4677789999998766542 34433333222211 12346666 88888888888877643
No 117
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=20.67 E-value=3.2e+02 Score=27.44 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=36.4
Q ss_pred ceEEEEEEEecCCCceeEEEEEeCCC---CeEEEeecCeEEEccCCcEEEEEEEEEe
Q 039265 622 AQTFTRTVTNVGQVYSSYAVNVVAPQ---GVVVSVKPSKLYFSKVNQKATYSVTFTR 675 (708)
Q Consensus 622 ~~~~~~tv~n~g~~~~ty~~~~~~~~---~~~v~v~p~~~~~~~~~~~~~~~v~~~~ 675 (708)
....+++|+|.++.+.--...+.... ...+-|+|..+++.+ |+++.+.|....
T Consensus 39 ~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~p-g~~q~vRii~~~ 94 (230)
T PRK09918 39 DGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEP-GQSQQVRFILKS 94 (230)
T ss_pred CCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECC-CCceEEEEEECC
Confidence 56777899999876433233333221 235778899999998 999998887654
No 118
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.49 E-value=3.5e+02 Score=28.48 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=49.0
Q ss_pred cCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHHCC----CcEEEEccCCCCC---C-CCCCHHHHHHHHHHhcCceEEEe
Q 039265 207 APYAHLAIYKVCFGGDVDCTESDLLAGLDAAIEDG----VDVLSISIGGGSV---P-FFNDSIAVGSFAAIQKGIFVSCA 278 (708)
Q Consensus 207 AP~A~l~~~kv~~~~~~g~~~~~i~~ai~~a~~~g----~dVIn~S~G~~~~---~-~~~~~~~~a~~~a~~~Gv~vV~A 278 (708)
.|.+++..|-+.=.+ .....+|+.||+.+.+.+ +|||-+-=||++. + +.+..+..+ ..+.-+.|+.+
T Consensus 39 ~~~~~~~~~p~~vQG--~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~vara---i~~~~~Pvisa 113 (319)
T PF02601_consen 39 NPIVEIILYPASVQG--EGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVARA---IAASPIPVISA 113 (319)
T ss_pred CCCcEEEEEeccccc--cchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHHH---HHhCCCCEEEe
Confidence 455666655543222 257788999999998765 9999999998752 2 233344432 33567999999
Q ss_pred cCCCCC
Q 039265 279 AGNSGP 284 (708)
Q Consensus 279 AGN~g~ 284 (708)
-|=+-.
T Consensus 114 IGHe~D 119 (319)
T PF02601_consen 114 IGHETD 119 (319)
T ss_pred cCCCCC
Confidence 997743
Done!