BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039268
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QH9|A Chain A, Human Liprin-Beta2 Coiled-Coil
Length = 81
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL 173
E L +E L+ +V++L N RN+ K++ + ++A+LQ +Q+ L AEI+ LH +L
Sbjct: 22 EELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQ---EQVALKDAEIERLHSQL 77
>pdb|2QV3|A Chain A, Crystal Structure Of The Helicobacter Pylori Vacuolating
Toxin P55 Domain
Length = 457
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 176 ARAAVDYEKKANIELMEQRQAMEKNLVSMAREVE-KLRAELTNFDGRPWGVGGPYGMNFS 234
A ++ ++E KA ++ + A N +S+ R V K+ A NF G G GG ++FS
Sbjct: 77 AGSSANFEFKAGVD-TKNGTATFNNDISLGRFVNLKVDAHTANFKGIDTGNGGFNTLDFS 135
Query: 235 GV 236
GV
Sbjct: 136 GV 137
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor
Domain
Length = 3245
Score = 30.4 bits (67), Expect = 1.2, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 15/95 (15%)
Query: 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLK 118
+++V+D+ A + + A+E ++ + +V +++ + +K ADL EP
Sbjct: 1962 KQMVQDQQAAEIKQKDARE-----------LQVQLDVRNKEIAVQKVKAYADLEKAEPTG 2010
Query: 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153
LR EV++L N NEL K + + L+
Sbjct: 2011 P----LREEVEQLENAANELKLKQDEIVATITALE 2041
>pdb|2W6A|A Chain A, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
pdb|2W6A|B Chain B, X-Ray Structure Of The Dimeric Git1 Coiled-Coil Domain
Length = 63
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI 159
LKK A+VQ+L + + L+ +++ LQ+++ KLQA+N Q+
Sbjct: 18 LKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60
>pdb|4AD8|A Chain A, Crystal Structure Of A Deletion Mutant Of Deinococcus
Radiodurans Recn
Length = 517
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL------ 145
E H LV +G AD A + ++ A + L+ L+N+ ++ +
Sbjct: 244 ESSKHPTSLVPRGSGSAADPEALD-------RVEARLSALSKLKNKYGPTLEDVVEFGAQ 296
Query: 146 -QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK 185
++LA L+ D + L+A++D LH EL+ A+D ++
Sbjct: 297 AAEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAARE 337
>pdb|2P22|A Chain A, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 174
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 77 EELHRMNLVIGEIRAEQEVHVRD--LVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134
E L + V+ E+ E +V D L + + E+ R E + + LRA Q +
Sbjct: 12 EMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQT 71
Query: 135 RNELNGKVQTLQKDLAKLQ-------ADNQQI-PLLRAEIDGLHQELMHARAAVDYEKKA 186
+ LN ++ L + AK+Q D++ + + A+ DGL+Q ++ A DY
Sbjct: 72 MHSLNAQIDVLTANRAKVQQFSSTSHVDDEDVNSIAVAKTDGLNQ--LYNLVAQDYALTD 129
Query: 187 NIELM 191
IE +
Sbjct: 130 TIECL 134
>pdb|3M38|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Designed Nitric Oxide Reductase Based On Myoglobin:
I107e Febmb (No Metal Ion Binding To Feb Site)
pdb|3M39|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Fe(Ii)-I107e
Febmb (Fe( Binding To Feb Site)
pdb|3M3A|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Cu(Ii)-I107e
Febmb (Cu( Binding To Feb Site)
pdb|3M3B|A Chain A, The Roles Of Glutamates And Metal Ions In A Rationally
Desig Oxide Reductase Based On Myoglobin: Zn(Ii)-I107e
Febmb (Zn( Binding To Feb Site)
Length = 153
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 103 KGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLL 162
K LK EA+++A+E LKK V E+ L + + G + K LA+ A +IP+
Sbjct: 47 KHLKTEAEMKASEDLKKHGV---TELTALGAILKK-KGHHEAELKPLAQSHATKHKIPIK 102
Query: 163 RAEIDG---LHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREV 208
E + +H ++H+R D+ A + + + K++ + +E+
Sbjct: 103 YLEFESEAIIH--VLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKEL 149
>pdb|1CO8|A Chain A, Recombinant Sperm Whale Myoglobin L104a Mutant (Met)
Length = 154
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 103 KGLKLEADLRATEPLKKEAVQ----LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ 158
K LK EA+++A+E LKK V L A ++K + EL K LA+ A +
Sbjct: 48 KHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAEL--------KPLAQSHATKHK 99
Query: 159 IPLLRAEI 166
IP+ AE
Sbjct: 100 IPIKYAEF 107
>pdb|3C9I|A Chain A, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|B Chain B, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|C Chain C, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|D Chain D, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|E Chain E, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
pdb|3C9I|F Chain F, Structure Of P22 Tail-Needle Gp26 Bound To Xenon Gas
Length = 242
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD 155
++ A+ +A L E+ L + L+G+V T + +++ LQAD
Sbjct: 99 RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQAD 148
>pdb|3A2G|A Chain A, Crystal Structure Of K102c-Myoglobin Conjugated With
Fluorescein
Length = 154
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 103 KGLKLEADLRATEPLKKEAVQ----LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ 158
K LK EA+++A+E LKK V L A ++K + EL K LA+ A +
Sbjct: 48 KHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAEL--------KPLAQSHATKHK 99
Query: 159 IPLLRAE-IDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREV 208
IP+ E I ++H+R D+ A + + + K++ + +E+
Sbjct: 100 IPICYLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKEL 150
>pdb|1CH9|A Chain A, Recombinant Sperm Whale Myoglobin H97q Mutant (Met)
Length = 154
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 103 KGLKLEADLRATEPLKKEAVQ----LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ 158
K LK EA+++A+E LKK V L A ++K + EL K LA+ A Q+
Sbjct: 48 KHLKTEAEMKASEDLKKHGVTVLTALGAILKKKGHHEAEL--------KPLAQSHATKQK 99
Query: 159 IPL 161
IP+
Sbjct: 100 IPI 102
>pdb|2POH|A Chain A, Structure Of Phage P22 Tail Needle Gp26
pdb|2POH|B Chain B, Structure Of Phage P22 Tail Needle Gp26
pdb|2POH|C Chain C, Structure Of Phage P22 Tail Needle Gp26
pdb|2POH|D Chain D, Structure Of Phage P22 Tail Needle Gp26
pdb|2POH|E Chain E, Structure Of Phage P22 Tail Needle Gp26
pdb|2POH|F Chain F, Structure Of Phage P22 Tail Needle Gp26
Length = 233
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD 155
++ A+ +A L E+ L + L+G+V T + +++ LQAD
Sbjct: 90 RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQAD 139
>pdb|3K9Z|A Chain A, Rational Design Of A Structural And Functional Nitric
Oxide Reductase
Length = 153
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 103 KGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLL 162
K LK EA+++A+E LKK V E+ L + + G + K LA+ A +IP+
Sbjct: 47 KHLKTEAEMKASEDLKKHGV---TELTALGAILKK-KGHHEAELKPLAQSHATKHKIPIK 102
Query: 163 RAE-IDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREV 208
E I ++H+R D+ A + + + K++ + +E+
Sbjct: 103 YLEFISEAIIHVLHSRHPGDFGADAQGAMNKALELFRKDIAAKYKEL 149
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound
pdb|1FGH|A Chain A, Complex With 4-Hydroxy-Trans-Aconitate
pdb|8ACN|A Chain A, Crystal Structures Of Aconitase With Isocitrate And
Nitroisocitrate Bound
Length = 754
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 60 RLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKK 119
RL DR+AMQ + A L ++ + ++ +H L+E L E DLR + + +
Sbjct: 63 RLRPDRVAMQ-DATAQMAMLQFISSGLPKVAVPSTIHCDHLIEAQLGGEKDLRRAKDINQ 121
Query: 120 EAVQLRA 126
E A
Sbjct: 122 EVYNFLA 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,674,849
Number of Sequences: 62578
Number of extensions: 304465
Number of successful extensions: 1136
Number of sequences better than 100.0: 128
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 114
Number of HSP's that attempted gapping in prelim test: 1109
Number of HSP's gapped (non-prelim): 140
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)