Query 039268
Match_columns 276
No_of_seqs 90 out of 101
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 08:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.7 0.0064 1.4E-07 64.1 22.0 24 194-217 471-494 (1164)
2 TIGR02169 SMC_prok_A chromosom 97.7 0.0094 2E-07 62.9 22.0 27 188-214 472-498 (1164)
3 PF00038 Filament: Intermediat 97.6 0.021 4.5E-07 52.8 20.7 115 40-154 23-138 (312)
4 PRK09039 hypothetical protein; 97.6 0.0085 1.8E-07 57.7 18.7 147 66-215 42-199 (343)
5 PRK11637 AmiB activator; Provi 97.6 0.049 1.1E-06 53.2 24.2 80 128-207 172-251 (428)
6 PF09726 Macoilin: Transmembra 97.3 0.11 2.5E-06 54.6 24.8 197 38-236 421-671 (697)
7 PF07888 CALCOCO1: Calcium bin 97.2 0.085 1.8E-06 54.3 21.3 33 187-219 285-317 (546)
8 PF05701 WEMBL: Weak chloropla 97.2 0.084 1.8E-06 53.4 20.9 105 114-218 283-405 (522)
9 PRK11637 AmiB activator; Provi 97.1 0.23 5E-06 48.6 22.6 61 128-191 161-221 (428)
10 PF08317 Spc7: Spc7 kinetochor 97.1 0.058 1.3E-06 51.2 18.0 152 70-221 107-266 (325)
11 PF07888 CALCOCO1: Calcium bin 97.1 0.093 2E-06 54.0 20.0 20 205-224 444-463 (546)
12 PF06818 Fez1: Fez1; InterPro 97.0 0.099 2.1E-06 47.7 18.0 147 65-214 12-199 (202)
13 PRK02224 chromosome segregatio 97.0 0.14 3E-06 53.8 21.1 26 192-217 377-402 (880)
14 COG1579 Zn-ribbon protein, pos 97.0 0.11 2.4E-06 48.4 18.1 131 50-184 11-151 (239)
15 PF08317 Spc7: Spc7 kinetochor 96.9 0.039 8.5E-07 52.4 14.7 36 59-94 152-187 (325)
16 PF09726 Macoilin: Transmembra 96.8 0.049 1.1E-06 57.3 16.1 27 116-142 457-483 (697)
17 PF12325 TMF_TATA_bd: TATA ele 96.7 0.048 1E-06 45.8 12.6 72 106-180 20-91 (120)
18 COG1196 Smc Chromosome segrega 96.7 0.29 6.3E-06 53.8 21.3 28 125-152 778-805 (1163)
19 COG4372 Uncharacterized protei 96.6 0.56 1.2E-05 47.0 21.2 105 49-160 109-230 (499)
20 TIGR01000 bacteriocin_acc bact 96.6 0.31 6.7E-06 48.0 19.2 25 158-182 237-261 (457)
21 KOG0161 Myosin class II heavy 96.6 0.32 7E-06 56.4 21.6 164 51-214 1395-1562(1930)
22 PRK04863 mukB cell division pr 96.6 0.36 7.9E-06 54.8 21.8 157 62-221 934-1117(1486)
23 TIGR01843 type_I_hlyD type I s 96.6 0.7 1.5E-05 43.5 20.9 63 160-222 213-276 (423)
24 PRK02224 chromosome segregatio 96.6 0.33 7.2E-06 51.0 20.3 44 40-83 181-226 (880)
25 PF07111 HCR: Alpha helical co 96.6 0.6 1.3E-05 49.5 21.8 175 33-219 14-210 (739)
26 PRK03918 chromosome segregatio 96.6 0.36 7.8E-06 50.5 20.4 72 102-173 221-292 (880)
27 PF14662 CCDC155: Coiled-coil 96.5 0.53 1.1E-05 42.8 18.6 87 51-148 10-96 (193)
28 PF10473 CENP-F_leu_zip: Leuci 96.5 0.23 4.9E-06 42.9 15.4 111 100-216 22-136 (140)
29 TIGR00606 rad50 rad50. This fa 96.5 0.31 6.6E-06 54.2 20.2 62 159-220 845-909 (1311)
30 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.4 0.46 9.9E-06 39.7 17.8 123 68-196 8-130 (132)
31 COG1196 Smc Chromosome segrega 96.4 0.76 1.6E-05 50.6 22.5 60 159-218 858-917 (1163)
32 PRK03918 chromosome segregatio 96.3 0.73 1.6E-05 48.2 21.1 18 129-146 310-327 (880)
33 TIGR00606 rad50 rad50. This fa 96.3 0.4 8.6E-06 53.4 19.9 54 167-222 1050-1103(1311)
34 PF10174 Cast: RIM-binding pro 96.2 0.52 1.1E-05 50.4 19.5 90 44-134 55-164 (775)
35 PF05701 WEMBL: Weak chloropla 96.2 0.55 1.2E-05 47.6 18.7 23 193-215 408-430 (522)
36 KOG0977 Nuclear envelope prote 96.2 0.9 1.9E-05 47.0 20.3 92 121-215 136-231 (546)
37 PF00038 Filament: Intermediat 96.1 0.4 8.7E-06 44.3 16.2 85 117-204 52-136 (312)
38 KOG2129 Uncharacterized conser 96.1 1.2 2.6E-05 45.2 19.9 126 89-218 152-308 (552)
39 KOG0995 Centromere-associated 96.0 0.6 1.3E-05 48.4 18.1 122 95-220 242-367 (581)
40 PF06160 EzrA: Septation ring 96.0 0.35 7.6E-06 49.4 16.2 173 40-217 220-404 (560)
41 PRK04778 septation ring format 95.9 0.34 7.3E-06 49.4 16.0 162 59-220 245-418 (569)
42 PF07798 DUF1640: Protein of u 95.8 0.4 8.8E-06 41.8 14.1 40 52-94 29-68 (177)
43 PF13514 AAA_27: AAA domain 95.8 1.8 4E-05 47.4 21.9 134 48-181 159-327 (1111)
44 PF04156 IncA: IncA protein; 95.8 0.43 9.4E-06 41.2 14.0 36 59-94 77-112 (191)
45 PHA02562 46 endonuclease subun 95.8 1.2 2.6E-05 44.1 18.7 22 129-150 302-323 (562)
46 TIGR01843 type_I_hlyD type I s 95.7 1.9 4.1E-05 40.7 19.0 27 195-221 242-268 (423)
47 PHA02562 46 endonuclease subun 95.7 1.1 2.4E-05 44.3 18.2 20 162-181 304-323 (562)
48 TIGR03007 pepcterm_ChnLen poly 95.6 0.88 1.9E-05 44.8 17.0 49 132-180 323-371 (498)
49 COG1579 Zn-ribbon protein, pos 95.6 1.2 2.7E-05 41.5 16.9 132 72-204 12-143 (239)
50 COG4942 Membrane-bound metallo 95.6 2.9 6.4E-05 42.1 23.1 7 226-232 273-279 (420)
51 PRK09039 hypothetical protein; 95.5 2.3 4.9E-05 41.2 19.0 53 38-94 42-98 (343)
52 smart00787 Spc7 Spc7 kinetocho 95.5 0.39 8.4E-06 46.1 13.7 107 114-220 153-260 (312)
53 KOG0161 Myosin class II heavy 95.4 2.3 5E-05 49.7 21.4 35 164-198 1104-1138(1930)
54 KOG4674 Uncharacterized conser 95.3 0.89 1.9E-05 52.6 17.7 160 50-220 1168-1328(1822)
55 PF15070 GOLGA2L5: Putative go 95.3 1.9 4E-05 45.2 18.8 149 66-214 18-193 (617)
56 PF12325 TMF_TATA_bd: TATA ele 95.3 0.45 9.8E-06 40.0 11.8 90 111-200 15-104 (120)
57 smart00787 Spc7 Spc7 kinetocho 95.3 0.86 1.9E-05 43.7 15.1 36 59-94 147-182 (312)
58 PF07798 DUF1640: Protein of u 95.2 1.9 4.2E-05 37.6 16.9 16 203-218 135-150 (177)
59 PF10174 Cast: RIM-binding pro 95.2 4.5 9.8E-05 43.5 21.5 178 39-216 291-489 (775)
60 PF08614 ATG16: Autophagy prot 95.1 0.55 1.2E-05 41.5 12.5 44 162-211 149-192 (194)
61 PF04111 APG6: Autophagy prote 95.1 0.45 9.7E-06 45.5 12.6 94 116-212 40-133 (314)
62 PF12128 DUF3584: Protein of u 95.0 3.5 7.6E-05 45.8 21.0 70 116-185 310-380 (1201)
63 KOG4807 F-actin binding protei 94.9 2.8 6E-05 42.5 17.9 176 35-216 349-575 (593)
64 KOG0933 Structural maintenance 94.9 2.9 6.3E-05 46.2 19.2 61 160-220 804-864 (1174)
65 KOG1853 LIS1-interacting prote 94.9 3.9 8.4E-05 39.3 18.5 110 64-179 21-130 (333)
66 PF09787 Golgin_A5: Golgin sub 94.8 2.7 5.9E-05 42.5 18.1 82 66-149 224-311 (511)
67 PF11932 DUF3450: Protein of u 94.7 1.3 2.9E-05 40.3 14.3 51 117-167 54-104 (251)
68 PF04849 HAP1_N: HAP1 N-termin 94.7 3.1 6.6E-05 40.3 17.1 113 52-166 86-222 (306)
69 PF11932 DUF3450: Protein of u 94.7 0.97 2.1E-05 41.3 13.2 97 122-221 38-146 (251)
70 PF12128 DUF3584: Protein of u 94.5 9.1 0.0002 42.7 22.4 68 114-181 773-840 (1201)
71 KOG0976 Rho/Rac1-interacting s 94.5 1.2 2.6E-05 48.4 14.8 99 43-141 327-439 (1265)
72 TIGR02680 conserved hypothetic 94.4 4 8.6E-05 46.1 19.7 50 149-198 905-955 (1353)
73 PF06818 Fez1: Fez1; InterPro 94.4 1.2 2.5E-05 40.8 12.9 123 78-218 11-150 (202)
74 PF05622 HOOK: HOOK protein; 94.4 0.012 2.5E-07 61.3 0.0 162 58-219 234-418 (713)
75 PRK09841 cryptic autophosphory 94.3 0.79 1.7E-05 48.0 13.3 115 65-182 269-388 (726)
76 KOG0980 Actin-binding protein 94.3 7.9 0.00017 42.4 20.5 74 134-207 467-544 (980)
77 PF08826 DMPK_coil: DMPK coile 94.3 0.39 8.4E-06 36.2 8.0 44 106-149 5-48 (61)
78 PF15619 Lebercilin: Ciliary p 94.1 4.2 9.1E-05 36.6 16.5 24 39-62 16-39 (194)
79 PF09789 DUF2353: Uncharacteri 94.0 1.3 2.8E-05 43.1 13.0 115 55-173 78-198 (319)
80 KOG0964 Structural maintenance 94.0 6.7 0.00015 43.5 19.4 109 41-149 691-822 (1200)
81 PRK04863 mukB cell division pr 93.9 9.4 0.0002 43.9 21.4 28 191-218 448-475 (1486)
82 TIGR02680 conserved hypothetic 93.9 5.8 0.00013 44.9 19.7 91 120-211 883-974 (1353)
83 COG1340 Uncharacterized archae 93.8 3.4 7.4E-05 39.8 15.4 104 98-201 134-244 (294)
84 PF10473 CENP-F_leu_zip: Leuci 93.8 4 8.7E-05 35.3 15.8 24 61-84 22-45 (140)
85 KOG0996 Structural maintenance 93.8 8 0.00017 43.5 19.9 163 50-222 430-600 (1293)
86 KOG0250 DNA repair protein RAD 93.8 10 0.00023 42.2 20.7 53 116-171 376-429 (1074)
87 KOG0996 Structural maintenance 93.7 9.5 0.00021 43.0 20.1 96 114-209 474-573 (1293)
88 KOG0250 DNA repair protein RAD 93.6 11 0.00023 42.1 20.4 87 68-154 293-386 (1074)
89 PRK10884 SH3 domain-containing 93.5 1.4 3E-05 40.1 11.7 27 66-92 89-115 (206)
90 TIGR01005 eps_transp_fam exopo 93.4 6.8 0.00015 40.9 18.1 36 144-179 356-391 (754)
91 PF13851 GAS: Growth-arrest sp 93.4 5.2 0.00011 36.0 15.0 23 196-218 147-169 (201)
92 PF14197 Cep57_CLD_2: Centroso 93.4 1.1 2.3E-05 34.4 9.1 43 126-178 26-68 (69)
93 PF10186 Atg14: UV radiation r 93.3 3.4 7.5E-05 37.2 14.0 51 128-181 58-108 (302)
94 PF08647 BRE1: BRE1 E3 ubiquit 93.3 3 6.4E-05 33.3 12.0 49 158-210 46-94 (96)
95 COG4372 Uncharacterized protei 93.3 10 0.00023 38.4 19.7 21 63-83 81-101 (499)
96 KOG4603 TBP-1 interacting prot 93.3 4.1 8.8E-05 37.0 14.0 96 119-215 79-178 (201)
97 PF14662 CCDC155: Coiled-coil 93.2 6.7 0.00014 35.8 17.9 156 45-218 25-184 (193)
98 KOG1029 Endocytic adaptor prot 93.2 4 8.7E-05 44.3 15.9 83 115-197 433-519 (1118)
99 PF13514 AAA_27: AAA domain 93.2 16 0.00035 40.2 21.3 49 141-189 785-833 (1111)
100 PF12718 Tropomyosin_1: Tropom 93.1 5.1 0.00011 34.3 16.7 127 67-193 4-133 (143)
101 PF05667 DUF812: Protein of un 93.1 10 0.00022 39.6 18.6 32 190-221 445-483 (594)
102 COG0419 SbcC ATPase involved i 92.9 16 0.00034 39.5 21.5 162 59-221 270-439 (908)
103 PF11559 ADIP: Afadin- and alp 92.9 4.3 9.3E-05 34.2 13.1 40 117-156 85-124 (151)
104 KOG0612 Rho-associated, coiled 92.9 7.4 0.00016 43.9 17.8 109 38-146 437-556 (1317)
105 cd07651 F-BAR_PombeCdc15_like 92.7 7.4 0.00016 35.1 17.3 145 51-207 62-211 (236)
106 KOG0995 Centromere-associated 92.5 16 0.00034 38.3 18.9 155 40-214 226-393 (581)
107 COG2433 Uncharacterized conser 92.3 3.4 7.4E-05 43.5 13.8 92 118-219 414-508 (652)
108 KOG1029 Endocytic adaptor prot 92.3 7.3 0.00016 42.5 16.3 84 61-144 435-518 (1118)
109 COG0419 SbcC ATPase involved i 92.3 19 0.00041 38.8 20.5 75 140-218 274-348 (908)
110 PF13805 Pil1: Eisosome compon 92.2 5.4 0.00012 38.1 14.1 94 92-194 121-214 (271)
111 KOG4673 Transcription factor T 92.1 1.1 2.3E-05 47.9 10.1 58 119-176 866-923 (961)
112 KOG4674 Uncharacterized conser 92.1 19 0.00041 42.3 20.5 87 59-148 801-887 (1822)
113 PF04156 IncA: IncA protein; 92.1 7.3 0.00016 33.6 14.1 15 76-90 80-94 (191)
114 PF15070 GOLGA2L5: Putative go 92.1 10 0.00022 39.9 17.1 123 83-215 3-138 (617)
115 PF05557 MAD: Mitotic checkpoi 92.1 0.044 9.5E-07 57.1 0.0 26 75-100 126-151 (722)
116 KOG0971 Microtubule-associated 92.0 7.7 0.00017 42.9 16.3 99 120-218 256-358 (1243)
117 PF15035 Rootletin: Ciliary ro 92.0 8.8 0.00019 34.3 16.0 115 99-219 61-179 (182)
118 PF05622 HOOK: HOOK protein; 91.9 0.046 9.9E-07 56.9 0.0 103 116-218 278-396 (713)
119 PF09486 HrpB7: Bacterial type 91.9 6.7 0.00014 34.6 13.4 104 68-180 20-123 (158)
120 PRK01156 chromosome segregatio 91.7 21 0.00045 38.1 21.2 22 144-165 309-330 (895)
121 KOG0612 Rho-associated, coiled 91.7 15 0.00032 41.7 18.4 11 43-53 476-486 (1317)
122 TIGR01005 eps_transp_fam exopo 91.7 13 0.00029 38.8 17.6 27 61-87 199-225 (754)
123 COG5185 HEC1 Protein involved 91.6 6.6 0.00014 40.6 14.6 149 63-219 249-402 (622)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.5 7.3 0.00016 32.5 14.4 66 146-211 48-117 (132)
125 PF15619 Lebercilin: Ciliary p 91.5 10 0.00022 34.2 17.4 88 115-202 64-156 (194)
126 KOG0933 Structural maintenance 91.4 14 0.00031 41.2 17.7 127 59-188 737-881 (1174)
127 PF08826 DMPK_coil: DMPK coile 91.4 1.9 4E-05 32.6 8.1 50 161-217 5-57 (61)
128 PF10186 Atg14: UV radiation r 91.4 11 0.00023 34.1 19.4 20 68-87 25-44 (302)
129 KOG0993 Rab5 GTPase effector R 91.2 19 0.00042 36.8 17.8 46 167-212 437-489 (542)
130 PF10234 Cluap1: Clusterin-ass 91.2 10 0.00022 36.2 14.6 66 114-179 171-240 (267)
131 KOG1962 B-cell receptor-associ 91.1 2.5 5.4E-05 39.1 10.3 94 79-185 113-214 (216)
132 PRK11519 tyrosine kinase; Prov 91.1 4.4 9.5E-05 42.5 13.4 110 64-180 268-386 (719)
133 TIGR03007 pepcterm_ChnLen poly 91.0 16 0.00035 36.1 16.6 33 61-93 159-191 (498)
134 KOG0249 LAR-interacting protei 91.0 7 0.00015 42.2 14.6 23 37-59 93-115 (916)
135 PRK11546 zraP zinc resistance 90.9 0.53 1.2E-05 40.9 5.5 50 130-179 62-111 (143)
136 PRK10361 DNA recombination pro 90.9 21 0.00046 36.6 20.4 88 127-217 100-197 (475)
137 PF10498 IFT57: Intra-flagella 90.7 9 0.0002 37.6 14.3 80 115-221 269-350 (359)
138 TIGR03017 EpsF chain length de 90.5 17 0.00038 35.1 17.2 32 62-93 170-201 (444)
139 PRK10246 exonuclease subunit S 90.5 32 0.00068 38.0 22.5 48 41-88 529-576 (1047)
140 PF05667 DUF812: Protein of un 90.4 5.8 0.00013 41.4 13.4 94 124-217 326-426 (594)
141 PLN03229 acetyl-coenzyme A car 90.4 29 0.00064 37.5 21.1 83 137-221 646-734 (762)
142 PF10481 CENP-F_N: Cenp-F N-te 90.4 5.9 0.00013 38.2 12.3 109 75-186 16-131 (307)
143 cd00890 Prefoldin Prefoldin is 90.1 7.2 0.00016 31.3 11.1 38 180-217 89-126 (129)
144 PF14197 Cep57_CLD_2: Centroso 90.0 4 8.7E-05 31.2 9.0 62 59-127 1-62 (69)
145 PF10168 Nup88: Nuclear pore c 89.9 26 0.00056 37.5 17.9 80 138-220 630-713 (717)
146 COG4942 Membrane-bound metallo 89.8 24 0.00053 35.7 20.9 25 63-87 73-97 (420)
147 PF14362 DUF4407: Domain of un 89.8 17 0.00037 33.8 14.8 36 164-199 218-253 (301)
148 PRK12704 phosphodiesterase; Pr 89.8 25 0.00055 36.1 17.2 55 138-192 91-145 (520)
149 PRK01156 chromosome segregatio 89.4 33 0.00071 36.6 19.2 29 114-142 631-659 (895)
150 PF09728 Taxilin: Myosin-like 89.3 7.5 0.00016 37.2 12.3 76 114-189 24-99 (309)
151 PF09787 Golgin_A5: Golgin sub 89.3 27 0.00059 35.4 20.6 22 159-180 276-297 (511)
152 PF05557 MAD: Mitotic checkpoi 89.2 0.11 2.5E-06 54.1 0.0 60 162-221 369-428 (722)
153 PF10498 IFT57: Intra-flagella 89.1 24 0.00052 34.7 16.1 57 164-220 266-322 (359)
154 COG3206 GumC Uncharacterized p 89.1 10 0.00022 37.4 13.4 45 138-182 347-391 (458)
155 KOG4673 Transcription factor T 89.0 38 0.00082 36.8 19.6 50 64-115 424-473 (961)
156 PF13851 GAS: Growth-arrest sp 89.0 17 0.00037 32.8 18.4 91 118-208 47-137 (201)
157 PF08614 ATG16: Autophagy prot 88.9 5.7 0.00012 35.1 10.5 101 37-141 69-173 (194)
158 PF10146 zf-C4H2: Zinc finger- 88.9 18 0.0004 33.5 14.2 51 119-172 53-103 (230)
159 PF05483 SCP-1: Synaptonemal c 88.8 38 0.00082 36.6 19.8 147 61-216 539-685 (786)
160 PF04111 APG6: Autophagy prote 88.8 11 0.00024 36.1 13.1 117 68-187 14-136 (314)
161 TIGR03017 EpsF chain length de 88.8 24 0.00052 34.2 17.4 28 60-87 175-202 (444)
162 TIGR03319 YmdA_YtgF conserved 88.7 31 0.00067 35.4 17.1 17 159-175 113-129 (514)
163 TIGR01010 BexC_CtrB_KpsE polys 88.7 9.8 0.00021 36.2 12.6 23 156-178 241-263 (362)
164 PF09730 BicD: Microtubule-ass 88.6 32 0.0007 37.0 17.4 145 67-221 31-185 (717)
165 PF02050 FliJ: Flagellar FliJ 88.6 9.2 0.0002 29.2 10.5 81 118-198 11-93 (123)
166 KOG0921 Dosage compensation co 88.5 0.64 1.4E-05 51.0 4.9 24 186-209 1114-1137(1282)
167 KOG0977 Nuclear envelope prote 88.5 15 0.00032 38.4 14.4 23 132-154 196-218 (546)
168 PF05483 SCP-1: Synaptonemal c 88.4 40 0.00088 36.4 20.2 115 38-155 391-521 (786)
169 PRK03947 prefoldin subunit alp 88.1 9.5 0.0002 31.7 10.8 43 177-219 93-135 (140)
170 TIGR03794 NHPM_micro_HlyD NHPM 88.0 27 0.00059 33.9 15.5 30 193-222 228-258 (421)
171 KOG3478 Prefoldin subunit 6, K 87.9 15 0.00033 31.2 11.7 97 117-223 10-114 (120)
172 PF08776 VASP_tetra: VASP tetr 87.9 2.6 5.6E-05 29.6 6.0 34 131-176 5-38 (40)
173 TIGR03185 DNA_S_dndD DNA sulfu 87.8 37 0.00081 35.2 17.3 30 82-111 378-407 (650)
174 PF07794 DUF1633: Protein of u 87.8 15 0.00033 38.4 13.8 115 98-221 593-720 (790)
175 KOG0979 Structural maintenance 87.7 52 0.0011 36.8 19.4 170 45-222 177-362 (1072)
176 KOG0288 WD40 repeat protein Ti 87.6 18 0.00038 36.9 13.9 82 69-153 12-96 (459)
177 COG3524 KpsE Capsule polysacch 87.5 16 0.00035 36.0 13.3 28 154-181 248-275 (372)
178 TIGR01000 bacteriocin_acc bact 87.3 32 0.0007 34.0 19.5 30 57-86 91-120 (457)
179 KOG2391 Vacuolar sorting prote 87.3 3.1 6.7E-05 41.1 8.4 89 117-207 207-296 (365)
180 KOG0243 Kinesin-like protein [ 87.3 33 0.00072 38.4 16.9 162 34-219 368-545 (1041)
181 PF09730 BicD: Microtubule-ass 87.2 19 0.00041 38.7 14.8 56 98-156 30-85 (717)
182 PRK10884 SH3 domain-containing 87.2 9.1 0.0002 34.8 10.9 17 162-178 137-153 (206)
183 PF09731 Mitofilin: Mitochondr 86.9 38 0.00082 34.4 20.0 137 68-206 249-399 (582)
184 KOG1937 Uncharacterized conser 86.9 21 0.00045 36.8 14.1 19 191-209 344-362 (521)
185 PF07106 TBPIP: Tat binding pr 86.6 13 0.00028 31.9 11.1 61 117-178 77-137 (169)
186 PRK10246 exonuclease subunit S 86.6 57 0.0012 36.1 20.0 63 118-180 776-845 (1047)
187 KOG0982 Centrosomal protein Nu 86.5 42 0.0009 34.5 19.2 66 40-105 220-292 (502)
188 PF05478 Prominin: Prominin; 86.5 43 0.00094 35.9 17.1 117 44-171 189-327 (806)
189 TIGR02971 heterocyst_DevB ABC 86.4 27 0.00059 32.3 14.0 29 194-222 181-209 (327)
190 COG2433 Uncharacterized conser 86.4 9.9 0.00021 40.2 11.9 106 113-219 430-537 (652)
191 KOG0976 Rho/Rac1-interacting s 86.4 31 0.00068 38.1 15.7 98 88-195 99-207 (1265)
192 KOG0963 Transcription factor/C 86.4 28 0.00062 36.8 15.2 32 188-219 313-344 (629)
193 PF07106 TBPIP: Tat binding pr 86.3 8.4 0.00018 33.1 9.8 67 118-185 71-137 (169)
194 PF06120 Phage_HK97_TLTM: Tail 86.2 20 0.00042 34.7 13.1 102 116-217 38-152 (301)
195 PF10481 CENP-F_N: Cenp-F N-te 86.2 34 0.00074 33.2 14.9 101 101-221 17-131 (307)
196 PRK04778 septation ring format 85.9 45 0.00097 34.3 21.0 104 115-219 379-503 (569)
197 PF14735 HAUS4: HAUS augmin-li 85.9 23 0.00049 33.1 13.0 133 49-181 85-226 (238)
198 PF04912 Dynamitin: Dynamitin 85.8 32 0.0007 33.5 14.6 81 66-147 264-350 (388)
199 PF08172 CASP_C: CASP C termin 85.8 5.3 0.00011 37.3 8.8 21 67-87 3-23 (248)
200 PF12592 DUF3763: Protein of u 85.8 3.4 7.4E-05 30.7 6.1 55 159-213 2-56 (57)
201 PF02403 Seryl_tRNA_N: Seryl-t 85.7 6.1 0.00013 31.4 8.1 63 106-175 23-85 (108)
202 KOG2264 Exostosin EXT1L [Signa 85.5 5.2 0.00011 42.3 9.3 52 120-181 87-138 (907)
203 PF15294 Leu_zip: Leucine zipp 85.5 36 0.00077 32.7 16.6 126 94-222 85-245 (278)
204 KOG0994 Extracellular matrix g 85.3 26 0.00056 40.1 14.8 44 66-109 1460-1506(1758)
205 PRK00106 hypothetical protein; 85.2 51 0.0011 34.3 19.0 54 139-192 107-160 (535)
206 KOG0249 LAR-interacting protei 85.1 17 0.00036 39.5 12.9 114 65-186 72-192 (916)
207 KOG3478 Prefoldin subunit 6, K 85.1 23 0.00049 30.2 11.4 72 78-153 6-89 (120)
208 PF05837 CENP-H: Centromere pr 85.0 17 0.00037 29.6 10.4 71 113-187 11-81 (106)
209 PF06008 Laminin_I: Laminin Do 84.9 31 0.00068 31.6 19.6 148 34-197 16-168 (264)
210 PF04728 LPP: Lipoprotein leuc 84.9 6.7 0.00014 29.3 7.3 42 130-181 7-48 (56)
211 KOG0999 Microtubule-associated 84.8 20 0.00042 38.0 13.0 104 116-219 5-127 (772)
212 KOG4403 Cell surface glycoprot 84.8 52 0.0011 34.0 16.8 28 227-254 443-470 (575)
213 PF06785 UPF0242: Uncharacteri 84.4 23 0.00049 35.3 12.6 97 50-154 76-176 (401)
214 TIGR03752 conj_TIGR03752 integ 84.4 12 0.00026 38.4 11.1 46 49-94 45-90 (472)
215 PF09304 Cortex-I_coil: Cortex 84.3 23 0.00051 29.6 11.8 72 119-200 23-94 (107)
216 PF01920 Prefoldin_2: Prefoldi 84.1 17 0.00037 28.0 9.8 23 193-215 77-99 (106)
217 PF12329 TMF_DNA_bd: TATA elem 83.9 11 0.00024 28.9 8.5 22 88-109 5-26 (74)
218 PF02050 FliJ: Flagellar FliJ 83.8 17 0.00037 27.7 11.9 28 68-95 3-30 (123)
219 PRK12704 phosphodiesterase; Pr 83.8 38 0.00082 34.8 14.6 20 169-188 167-186 (520)
220 PRK10476 multidrug resistance 83.7 33 0.00071 32.4 13.3 22 201-222 192-213 (346)
221 COG1382 GimC Prefoldin, chaper 83.6 22 0.00047 30.2 10.7 68 106-176 31-110 (119)
222 TIGR02231 conserved hypothetic 83.5 14 0.0003 37.2 11.3 27 66-92 74-100 (525)
223 cd07653 F-BAR_CIP4-like The F- 83.5 33 0.00072 30.8 17.3 24 188-211 204-227 (251)
224 PRK06569 F0F1 ATP synthase sub 83.4 31 0.00067 30.4 14.2 101 87-202 36-138 (155)
225 PRK09343 prefoldin subunit bet 83.4 16 0.00036 30.3 9.9 34 99-132 25-58 (121)
226 PF00769 ERM: Ezrin/radixin/mo 83.4 38 0.00083 31.4 13.7 95 117-221 38-132 (246)
227 PF10212 TTKRSYEDQ: Predicted 83.2 54 0.0012 34.1 15.3 88 118-218 426-513 (518)
228 TIGR00634 recN DNA repair prot 83.1 58 0.0013 33.3 17.7 25 67-91 158-182 (563)
229 KOG0994 Extracellular matrix g 83.0 85 0.0018 36.2 17.5 32 191-222 1709-1740(1758)
230 PF08581 Tup_N: Tup N-terminal 82.7 14 0.0003 29.1 8.7 60 159-219 6-77 (79)
231 PF12718 Tropomyosin_1: Tropom 82.6 30 0.00065 29.6 15.0 83 88-177 4-93 (143)
232 PF07889 DUF1664: Protein of u 82.5 24 0.00051 30.1 10.6 82 113-200 44-125 (126)
233 TIGR03319 YmdA_YtgF conserved 82.5 63 0.0014 33.2 17.8 21 169-189 161-181 (514)
234 PF06785 UPF0242: Uncharacteri 82.5 38 0.00083 33.8 13.4 89 45-143 95-186 (401)
235 PLN03229 acetyl-coenzyme A car 82.4 58 0.0012 35.4 15.6 78 137-219 508-591 (762)
236 PF03962 Mnd1: Mnd1 family; I 82.2 10 0.00023 33.8 8.9 76 117-196 67-142 (188)
237 PF05911 DUF869: Plant protein 82.2 81 0.0018 34.3 17.5 143 63-216 24-200 (769)
238 PF08581 Tup_N: Tup N-terminal 82.1 20 0.00044 28.2 9.4 43 114-156 6-48 (79)
239 TIGR00634 recN DNA repair prot 82.0 64 0.0014 33.0 16.8 13 137-149 326-338 (563)
240 PRK13453 F0F1 ATP synthase sub 81.9 34 0.00073 29.7 12.4 85 102-191 49-134 (173)
241 PRK10361 DNA recombination pro 81.9 66 0.0014 33.1 20.4 39 164-202 154-192 (475)
242 PF08912 Rho_Binding: Rho Bind 81.8 12 0.00027 29.0 7.9 58 124-197 1-58 (69)
243 smart00806 AIP3 Actin interact 81.5 34 0.00075 34.7 13.0 119 69-187 154-280 (426)
244 TIGR02231 conserved hypothetic 81.3 16 0.00034 36.8 10.7 29 191-219 144-172 (525)
245 PF13094 CENP-Q: CENP-Q, a CEN 81.2 33 0.00072 29.2 11.8 73 55-148 19-91 (160)
246 TIGR02473 flagell_FliJ flagell 81.2 27 0.00059 28.2 11.9 41 159-199 70-110 (141)
247 TIGR00414 serS seryl-tRNA synt 81.1 11 0.00024 37.4 9.4 33 112-144 30-62 (418)
248 COG1842 PspA Phage shock prote 81.1 46 0.001 30.8 13.5 44 66-109 27-73 (225)
249 KOG0999 Microtubule-associated 80.8 83 0.0018 33.6 16.9 59 149-207 99-157 (772)
250 PF05266 DUF724: Protein of un 80.8 25 0.00054 31.7 10.7 44 130-176 142-185 (190)
251 PF11180 DUF2968: Protein of u 80.6 41 0.00089 30.8 12.0 84 69-154 95-182 (192)
252 KOG0971 Microtubule-associated 80.5 1.1E+02 0.0023 34.6 18.9 170 51-220 257-431 (1243)
253 PF07139 DUF1387: Protein of u 80.4 32 0.00068 33.5 11.9 90 119-218 160-255 (302)
254 KOG0018 Structural maintenance 80.2 1.1E+02 0.0024 34.6 18.1 155 61-218 158-350 (1141)
255 cd00584 Prefoldin_alpha Prefol 80.1 31 0.00067 28.1 11.0 38 179-216 88-125 (129)
256 TIGR02971 heterocyst_DevB ABC 80.0 51 0.0011 30.6 16.4 100 122-221 93-201 (327)
257 KOG0963 Transcription factor/C 79.7 90 0.002 33.3 20.5 15 95-109 196-210 (629)
258 cd07674 F-BAR_FCHO1 The F-BAR 79.5 52 0.0011 30.4 15.7 138 53-207 64-204 (261)
259 PF04626 DEC-1_C: Dec-1 protei 79.5 1.1 2.4E-05 38.2 1.6 23 227-251 75-98 (132)
260 KOG0946 ER-Golgi vesicle-tethe 79.4 95 0.002 34.4 16.0 99 112-210 730-855 (970)
261 PF10146 zf-C4H2: Zinc finger- 79.3 54 0.0012 30.5 15.2 88 117-214 16-103 (230)
262 PF08172 CASP_C: CASP C termin 79.2 16 0.00035 34.1 9.4 36 183-218 91-126 (248)
263 KOG3433 Protein involved in me 79.1 9.8 0.00021 34.9 7.6 58 162-219 86-143 (203)
264 PRK14474 F0F1 ATP synthase sub 79.0 49 0.0011 30.7 12.4 81 106-191 40-121 (250)
265 PRK11519 tyrosine kinase; Prov 79.0 33 0.00072 36.1 12.6 24 189-212 374-397 (719)
266 PF07139 DUF1387: Protein of u 78.9 36 0.00078 33.1 11.7 50 115-166 203-252 (302)
267 PRK05431 seryl-tRNA synthetase 78.8 13 0.00028 36.9 9.1 35 110-144 26-60 (425)
268 TIGR03794 NHPM_micro_HlyD NHPM 78.8 67 0.0015 31.2 17.2 23 199-221 227-249 (421)
269 KOG0993 Rab5 GTPase effector R 78.7 41 0.00089 34.5 12.4 23 72-94 33-55 (542)
270 PRK03598 putative efflux pump 78.7 57 0.0012 30.5 14.3 83 140-222 121-208 (331)
271 PF04949 Transcrip_act: Transc 78.7 48 0.001 29.5 11.9 86 117-212 54-146 (159)
272 PF06721 DUF1204: Protein of u 78.7 51 0.0011 30.5 12.0 71 139-215 28-100 (228)
273 PRK06569 F0F1 ATP synthase sub 78.7 46 0.001 29.3 11.8 119 34-170 33-152 (155)
274 PF00261 Tropomyosin: Tropomyo 78.6 52 0.0011 29.9 17.4 48 67-114 5-55 (237)
275 PF06810 Phage_GP20: Phage min 78.6 15 0.00033 31.8 8.5 61 119-179 13-73 (155)
276 PF05266 DUF724: Protein of un 78.4 40 0.00087 30.3 11.3 92 120-221 87-181 (190)
277 COG3883 Uncharacterized protei 78.2 27 0.0006 33.3 10.6 37 117-153 43-79 (265)
278 KOG4643 Uncharacterized coiled 78.1 1.3E+02 0.0028 34.1 21.1 27 192-219 579-605 (1195)
279 PRK11578 macrolide transporter 78.0 45 0.00097 31.7 12.2 92 117-222 97-188 (370)
280 TIGR02338 gimC_beta prefoldin, 78.0 32 0.00069 27.8 9.7 27 102-128 24-50 (110)
281 KOG4809 Rab6 GTPase-interactin 77.8 1E+02 0.0022 32.8 16.4 66 48-113 330-405 (654)
282 PF11559 ADIP: Afadin- and alp 77.6 42 0.0009 28.2 15.7 48 107-154 47-94 (151)
283 KOG4807 F-actin binding protei 77.4 91 0.002 32.1 18.7 147 69-219 362-539 (593)
284 PF06160 EzrA: Septation ring 77.4 92 0.002 32.1 16.7 165 35-218 161-332 (560)
285 PF03915 AIP3: Actin interacti 77.0 80 0.0017 32.0 14.0 122 69-190 150-279 (424)
286 PF14182 YgaB: YgaB-like prote 76.8 27 0.00058 27.9 8.5 51 120-182 15-65 (79)
287 TIGR00293 prefoldin, archaeal 76.8 38 0.00083 27.4 10.3 39 178-216 86-124 (126)
288 KOG0946 ER-Golgi vesicle-tethe 76.7 76 0.0016 35.1 14.4 143 43-198 731-882 (970)
289 PF13747 DUF4164: Domain of un 76.6 35 0.00076 27.2 9.3 33 116-148 50-82 (89)
290 COG1730 GIM5 Predicted prefold 76.3 51 0.0011 28.7 10.9 42 177-218 93-134 (145)
291 PF10153 DUF2361: Uncharacteri 76.2 45 0.00098 28.0 11.3 38 44-81 2-39 (114)
292 KOG1981 SOK1 kinase belonging 76.1 51 0.0011 34.3 12.5 48 166-218 232-279 (513)
293 PF04880 NUDE_C: NUDE protein, 76.0 1.4 3.1E-05 39.1 1.4 31 38-72 17-47 (166)
294 PF05008 V-SNARE: Vesicle tran 75.8 20 0.00043 26.8 7.4 41 117-157 37-78 (79)
295 COG1382 GimC Prefoldin, chaper 75.8 43 0.00092 28.5 10.0 30 193-222 85-114 (119)
296 PF03962 Mnd1: Mnd1 family; I 75.7 59 0.0013 29.0 12.3 49 133-181 103-152 (188)
297 PRK06975 bifunctional uroporph 75.7 26 0.00055 36.9 10.6 44 67-110 343-386 (656)
298 PRK11281 hypothetical protein; 75.5 88 0.0019 35.4 15.1 25 67-91 84-108 (1113)
299 TIGR01069 mutS2 MutS2 family p 75.4 70 0.0015 34.5 13.9 15 160-174 575-589 (771)
300 PF13870 DUF4201: Domain of un 75.3 53 0.0012 28.3 17.8 55 164-218 105-164 (177)
301 PF04350 PilO: Pilus assembly 75.3 11 0.00024 30.6 6.3 47 137-183 3-49 (144)
302 TIGR03752 conj_TIGR03752 integ 75.1 51 0.0011 33.9 12.2 7 227-233 153-159 (472)
303 COG4477 EzrA Negative regulato 75.0 1.2E+02 0.0025 32.1 15.2 91 128-218 318-408 (570)
304 PF12252 SidE: Dot/Icm substra 74.9 61 0.0013 36.9 13.3 90 126-217 1200-1309(1439)
305 PF12329 TMF_DNA_bd: TATA elem 74.9 28 0.0006 26.8 8.1 59 157-215 12-70 (74)
306 PF04728 LPP: Lipoprotein leuc 74.7 14 0.00031 27.6 6.1 32 122-153 6-37 (56)
307 PF12252 SidE: Dot/Icm substra 74.6 74 0.0016 36.2 13.9 137 66-217 1066-1225(1439)
308 COG4985 ABC-type phosphate tra 74.6 44 0.00096 31.9 10.8 24 65-88 159-182 (289)
309 PRK15178 Vi polysaccharide exp 74.2 1.1E+02 0.0023 31.3 14.3 79 137-215 290-381 (434)
310 TIGR03185 DNA_S_dndD DNA sulfu 74.2 1.2E+02 0.0025 31.7 22.7 19 162-180 426-444 (650)
311 PRK07720 fliJ flagellar biosyn 73.9 51 0.0011 27.5 12.0 82 118-199 29-113 (146)
312 PF04012 PspA_IM30: PspA/IM30 73.9 64 0.0014 28.6 19.1 106 38-146 26-132 (221)
313 TIGR02894 DNA_bind_RsfA transc 73.9 41 0.00089 30.0 9.9 67 147-213 87-153 (161)
314 PF05911 DUF869: Plant protein 73.6 1.4E+02 0.0031 32.5 16.3 108 99-209 593-718 (769)
315 PLN02939 transferase, transfer 73.5 1.6E+02 0.0035 33.0 18.8 106 68-176 224-343 (977)
316 COG5185 HEC1 Protein involved 73.0 1.3E+02 0.0028 31.6 17.2 85 93-184 300-395 (622)
317 KOG4687 Uncharacterized coiled 72.9 89 0.0019 30.7 12.6 46 115-160 93-138 (389)
318 KOG1853 LIS1-interacting prote 72.7 97 0.0021 30.1 13.4 29 40-68 46-78 (333)
319 COG3206 GumC Uncharacterized p 72.6 49 0.0011 32.7 11.2 147 63-215 246-403 (458)
320 PF10234 Cluap1: Clusterin-ass 72.5 35 0.00075 32.6 9.7 79 61-153 160-238 (267)
321 PF09731 Mitofilin: Mitochondr 72.3 1.2E+02 0.0025 30.9 17.4 37 167-205 329-365 (582)
322 PF12795 MscS_porin: Mechanose 72.2 77 0.0017 28.7 12.3 148 55-221 30-179 (240)
323 KOG4460 Nuclear pore complex, 72.0 1.4E+02 0.0029 32.0 14.4 21 167-187 665-685 (741)
324 COG1730 GIM5 Predicted prefold 71.5 69 0.0015 27.9 11.0 36 59-94 9-44 (145)
325 COG1340 Uncharacterized archae 71.3 1E+02 0.0023 29.9 19.5 72 137-215 135-209 (294)
326 PF09755 DUF2046: Uncharacteri 71.2 1.1E+02 0.0023 30.0 17.4 168 34-217 19-203 (310)
327 KOG2991 Splicing regulator [RN 70.8 19 0.00041 34.8 7.6 76 103-184 237-312 (330)
328 PF13870 DUF4201: Domain of un 70.8 69 0.0015 27.6 16.1 18 200-217 113-130 (177)
329 PF05700 BCAS2: Breast carcino 70.7 37 0.0008 30.8 9.2 68 57-127 137-211 (221)
330 PF12711 Kinesin-relat_1: Kine 70.5 40 0.00086 27.2 8.2 30 164-195 51-80 (86)
331 PF12004 DUF3498: Domain of un 70.5 1.4 3E-05 45.1 0.0 77 49-138 376-466 (495)
332 KOG1937 Uncharacterized conser 70.4 1.4E+02 0.003 31.0 21.0 67 146-215 451-518 (521)
333 PF05082 Rop-like: Rop-like; 70.4 39 0.00085 26.0 7.8 59 120-181 3-61 (66)
334 PF05794 Tcp11: T-complex prot 70.4 1.1E+02 0.0023 29.9 12.9 53 129-195 137-189 (441)
335 PF10168 Nup88: Nuclear pore c 70.4 1.6E+02 0.0035 31.7 17.3 11 168-178 636-646 (717)
336 PF04094 DUF390: Protein of un 70.3 21 0.00046 38.6 8.5 68 132-213 381-452 (828)
337 cd00632 Prefoldin_beta Prefold 70.1 54 0.0012 26.1 10.4 24 119-142 6-29 (105)
338 cd07673 F-BAR_FCHO2 The F-BAR 69.9 97 0.0021 29.0 15.5 30 54-83 72-101 (269)
339 KOG2264 Exostosin EXT1L [Signa 69.9 27 0.00058 37.3 8.9 60 110-179 84-143 (907)
340 PF00769 ERM: Ezrin/radixin/mo 69.5 96 0.0021 28.8 14.9 16 164-179 103-118 (246)
341 PF05615 THOC7: Tho complex su 69.5 61 0.0013 26.9 9.6 64 113-179 47-110 (139)
342 smart00338 BRLZ basic region l 68.9 23 0.0005 25.8 6.2 37 117-153 24-60 (65)
343 KOG1924 RhoA GTPase effector D 68.4 6 0.00013 43.2 4.1 23 191-213 791-813 (1102)
344 KOG4687 Uncharacterized coiled 68.2 55 0.0012 32.1 10.1 28 67-94 20-47 (389)
345 KOG2629 Peroxisomal membrane a 67.8 37 0.0008 33.0 8.8 75 106-180 119-198 (300)
346 KOG0964 Structural maintenance 67.4 2.3E+02 0.0049 32.3 17.8 127 96-222 231-372 (1200)
347 COG1842 PspA Phage shock prote 67.4 1.1E+02 0.0023 28.4 13.3 100 120-221 39-142 (225)
348 PF01576 Myosin_tail_1: Myosin 67.3 1.8 3.9E-05 46.7 0.0 88 131-221 544-631 (859)
349 PRK00409 recombination and DNA 67.2 1.5E+02 0.0032 32.1 14.2 18 200-217 608-625 (782)
350 PF14992 TMCO5: TMCO5 family 66.8 1.1E+02 0.0024 29.6 11.8 28 186-214 155-182 (280)
351 TIGR02449 conserved hypothetic 66.6 51 0.0011 25.2 7.8 44 105-148 7-50 (65)
352 PF12072 DUF3552: Domain of un 66.4 96 0.0021 27.6 14.5 41 42-84 27-67 (201)
353 PF02841 GBP_C: Guanylate-bind 66.0 1.2E+02 0.0025 28.5 12.7 9 38-46 176-184 (297)
354 PF07407 Seadorna_VP6: Seadorn 66.0 36 0.00079 33.9 8.6 79 70-169 32-112 (420)
355 cd07599 BAR_Rvs167p The Bin/Am 66.0 97 0.0021 27.5 13.3 114 37-151 4-135 (216)
356 KOG0288 WD40 repeat protein Ti 65.9 1.5E+02 0.0034 30.3 13.1 51 90-143 8-58 (459)
357 PLN02678 seryl-tRNA synthetase 65.4 44 0.00096 33.9 9.4 28 117-144 38-65 (448)
358 TIGR03321 alt_F1F0_F0_B altern 65.1 1.1E+02 0.0024 27.9 12.0 81 103-188 37-118 (246)
359 PF10243 MIP-T3: Microtubule-b 65.1 2.1 4.5E-05 43.5 0.0 136 63-220 391-530 (539)
360 PF12777 MT: Microtubule-bindi 65.0 29 0.00062 33.4 7.7 69 112-180 214-286 (344)
361 PF05529 Bap31: B-cell recepto 65.0 47 0.001 29.0 8.5 17 137-153 158-174 (192)
362 PF10211 Ax_dynein_light: Axon 64.9 1E+02 0.0022 27.5 14.8 9 39-47 37-45 (189)
363 PF06156 DUF972: Protein of un 64.5 47 0.001 27.4 7.8 12 98-109 4-15 (107)
364 PF00170 bZIP_1: bZIP transcri 64.3 44 0.00094 24.3 6.9 38 117-154 24-61 (64)
365 PRK00409 recombination and DNA 64.2 1.8E+02 0.0039 31.5 14.1 14 161-174 581-594 (782)
366 KOG4403 Cell surface glycoprot 64.1 96 0.0021 32.2 11.3 22 193-214 355-376 (575)
367 PRK15396 murein lipoprotein; P 63.3 33 0.00071 27.1 6.4 15 166-180 55-69 (78)
368 PRK07352 F0F1 ATP synthase sub 63.2 99 0.0022 26.7 12.4 82 103-189 51-133 (174)
369 PF01576 Myosin_tail_1: Myosin 63.1 2.4 5.2E-05 45.7 0.0 155 59-216 345-506 (859)
370 PF06637 PV-1: PV-1 protein (P 62.7 1.8E+02 0.004 29.6 12.9 42 35-76 274-319 (442)
371 PF04582 Reo_sigmaC: Reovirus 62.5 4.7 0.0001 39.4 1.9 56 98-156 31-86 (326)
372 PF15254 CCDC14: Coiled-coil d 62.5 1.2E+02 0.0025 33.5 12.1 48 131-181 432-479 (861)
373 PF12761 End3: Actin cytoskele 62.5 64 0.0014 29.6 9.0 24 64-87 97-120 (195)
374 PHA02414 hypothetical protein 62.1 26 0.00057 29.2 5.8 73 92-171 1-78 (111)
375 TIGR01069 mutS2 MutS2 family p 62.1 2.3E+02 0.0051 30.6 14.6 10 204-213 601-610 (771)
376 PF09744 Jnk-SapK_ap_N: JNK_SA 62.0 1.1E+02 0.0024 26.9 10.3 7 36-42 31-37 (158)
377 COG1566 EmrA Multidrug resista 62.0 68 0.0015 31.6 9.7 18 205-222 196-213 (352)
378 smart00502 BBC B-Box C-termina 61.7 73 0.0016 24.6 13.5 46 138-185 55-100 (127)
379 PF15397 DUF4618: Domain of un 61.6 1.5E+02 0.0033 28.2 18.0 93 64-156 7-104 (258)
380 TIGR03495 phage_LysB phage lys 61.6 95 0.0021 26.8 9.4 32 117-148 24-55 (135)
381 COG1322 Predicted nuclease of 61.5 2E+02 0.0042 29.5 19.6 99 120-221 85-193 (448)
382 cd07652 F-BAR_Rgd1 The F-BAR ( 61.5 1.3E+02 0.0028 27.5 13.0 39 53-91 69-107 (234)
383 TIGR02977 phageshock_pspA phag 61.4 1.2E+02 0.0027 27.2 18.3 41 61-101 50-91 (219)
384 PF03245 Phage_lysis: Bacterio 61.4 56 0.0012 27.4 7.9 59 164-222 7-65 (125)
385 PF15294 Leu_zip: Leucine zipp 61.4 1.6E+02 0.0035 28.4 12.4 34 181-216 244-277 (278)
386 PRK09841 cryptic autophosphory 61.3 2.1E+02 0.0045 30.3 13.8 50 152-212 334-383 (726)
387 PF14932 HAUS-augmin3: HAUS au 60.6 1.4E+02 0.0031 27.6 11.7 98 65-166 70-169 (256)
388 KOG3119 Basic region leucine z 60.4 35 0.00075 32.1 7.2 51 113-180 202-252 (269)
389 KOG4715 SWI/SNF-related matrix 60.2 1.3E+02 0.0027 30.1 11.0 56 139-195 259-314 (410)
390 cd00632 Prefoldin_beta Prefold 60.1 86 0.0019 24.9 9.8 14 137-150 67-80 (105)
391 KOG0517 Beta-spectrin [Cytoske 60.0 2.1E+02 0.0046 34.8 14.1 129 53-181 971-1121(2473)
392 cd07657 F-BAR_Fes_Fer The F-BA 59.8 1.4E+02 0.0031 27.4 16.9 145 51-214 67-230 (237)
393 PRK06800 fliH flagellar assemb 59.7 56 0.0012 30.3 8.1 33 113-145 46-78 (228)
394 PF05791 Bacillus_HBL: Bacillu 59.7 94 0.002 27.4 9.4 19 164-182 163-181 (184)
395 PRK14475 F0F1 ATP synthase sub 59.7 1.1E+02 0.0025 26.2 11.9 94 103-207 42-136 (167)
396 PRK03598 putative efflux pump 59.5 1.5E+02 0.0033 27.6 11.3 10 120-129 146-155 (331)
397 PF14817 HAUS5: HAUS augmin-li 59.4 2.5E+02 0.0054 30.0 18.2 138 68-221 302-439 (632)
398 PF03961 DUF342: Protein of un 59.3 65 0.0014 32.0 9.2 24 195-218 385-408 (451)
399 COG5293 Predicted ATPase [Gene 59.2 2.4E+02 0.0051 29.7 13.3 140 62-204 300-453 (591)
400 KOG3156 Uncharacterized membra 59.1 1.6E+02 0.0034 27.6 11.0 18 202-219 177-194 (220)
401 PRK15136 multidrug efflux syst 59.0 1.3E+02 0.0028 29.3 11.1 15 208-222 206-220 (390)
402 PRK06800 fliH flagellar assemb 58.9 89 0.0019 29.0 9.2 12 70-81 41-52 (228)
403 PRK06231 F0F1 ATP synthase sub 58.7 1.4E+02 0.003 26.9 11.9 33 169-207 142-174 (205)
404 PRK13455 F0F1 ATP synthase sub 58.6 1.2E+02 0.0027 26.3 11.9 33 169-207 121-153 (184)
405 COG5178 PRP8 U5 snRNP spliceos 58.1 7.8 0.00017 44.1 2.7 17 31-47 24-41 (2365)
406 PF01920 Prefoldin_2: Prefoldi 58.0 84 0.0018 24.1 9.2 8 192-199 90-97 (106)
407 PF02403 Seryl_tRNA_N: Seryl-t 58.0 92 0.002 24.6 10.5 8 138-145 72-79 (108)
408 PRK05689 fliJ flagellar biosyn 57.8 1.1E+02 0.0024 25.4 11.6 41 159-199 73-113 (147)
409 PF07028 DUF1319: Protein of u 57.6 96 0.0021 26.7 8.7 80 132-211 29-122 (126)
410 PF04799 Fzo_mitofusin: fzo-li 57.5 57 0.0012 29.3 7.6 69 55-127 91-159 (171)
411 TIGR02559 HrpB7 type III secre 57.5 1.4E+02 0.0031 26.6 14.2 44 134-180 80-123 (158)
412 PF07200 Mod_r: Modifier of ru 57.4 1.1E+02 0.0025 25.4 12.5 15 165-179 125-139 (150)
413 TIGR02449 conserved hypothetic 57.3 42 0.0009 25.7 5.8 62 121-199 2-63 (65)
414 KOG0243 Kinesin-like protein [ 57.3 3.4E+02 0.0073 30.9 17.7 34 160-193 535-568 (1041)
415 PRK09343 prefoldin subunit bet 57.3 1.1E+02 0.0024 25.3 11.0 27 192-218 85-111 (121)
416 cd07666 BAR_SNX7 The Bin/Amphi 57.2 1.7E+02 0.0037 27.4 17.9 61 115-179 139-199 (243)
417 KOG1924 RhoA GTPase effector D 57.1 12 0.00026 41.0 3.9 21 166-186 794-814 (1102)
418 PLN02320 seryl-tRNA synthetase 57.0 61 0.0013 33.5 8.7 30 114-143 95-124 (502)
419 PRK13729 conjugal transfer pil 56.6 30 0.00066 35.6 6.5 32 117-148 81-112 (475)
420 TIGR00998 8a0101 efflux pump m 56.4 1.7E+02 0.0036 27.1 16.3 16 207-222 194-209 (334)
421 PF11705 RNA_pol_3_Rpc31: DNA- 56.4 24 0.00052 32.1 5.3 18 38-55 48-65 (233)
422 PRK13729 conjugal transfer pil 56.3 1.6E+02 0.0035 30.5 11.5 17 199-215 104-120 (475)
423 PLN02678 seryl-tRNA synthetase 56.0 1.1E+02 0.0024 31.1 10.3 30 120-149 34-63 (448)
424 PF05700 BCAS2: Breast carcino 55.7 1.6E+02 0.0035 26.7 11.5 74 105-181 139-213 (221)
425 KOG0982 Centrosomal protein Nu 55.5 2.6E+02 0.0056 29.0 13.2 59 85-146 287-345 (502)
426 PRK13169 DNA replication intia 55.4 65 0.0014 26.9 7.2 19 164-182 36-54 (110)
427 PF02183 HALZ: Homeobox associ 54.9 40 0.00087 23.8 5.0 34 115-148 8-41 (45)
428 PF04871 Uso1_p115_C: Uso1 / p 54.5 1.2E+02 0.0026 25.8 8.9 74 96-169 9-89 (136)
429 cd07648 F-BAR_FCHO The F-BAR ( 54.4 1.7E+02 0.0037 26.6 16.8 41 164-207 164-204 (261)
430 PRK13454 F0F1 ATP synthase sub 54.1 1.5E+02 0.0033 26.0 12.6 43 106-148 66-109 (181)
431 PF13166 AAA_13: AAA domain 53.5 2.7E+02 0.006 28.7 20.7 94 83-177 328-423 (712)
432 PF10805 DUF2730: Protein of u 53.1 87 0.0019 25.4 7.5 7 120-126 66-72 (106)
433 KOG0239 Kinesin (KAR3 subfamil 53.1 3.2E+02 0.0069 29.3 15.7 133 59-201 178-316 (670)
434 PF03954 Lectin_N: Hepatic lec 53.1 63 0.0014 28.2 6.9 42 157-208 94-135 (138)
435 PRK05431 seryl-tRNA synthetase 53.1 1.4E+02 0.003 29.9 10.3 30 120-149 29-58 (425)
436 TIGR01730 RND_mfp RND family e 52.7 1.4E+02 0.0031 26.9 9.6 61 141-222 79-139 (322)
437 PF06156 DUF972: Protein of un 52.5 62 0.0013 26.7 6.6 49 133-184 8-56 (107)
438 KOG0018 Structural maintenance 52.3 4.1E+02 0.009 30.4 16.7 144 62-206 200-352 (1141)
439 cd07643 I-BAR_IMD_MIM Inverse 52.3 1.9E+02 0.0042 27.2 10.5 119 97-222 24-177 (231)
440 PRK11020 hypothetical protein; 52.2 92 0.002 26.6 7.6 33 151-183 25-57 (118)
441 KOG4360 Uncharacterized coiled 52.2 2.6E+02 0.0056 29.6 12.2 122 51-178 168-303 (596)
442 PRK11281 hypothetical protein; 52.2 4.1E+02 0.0089 30.3 18.9 27 68-94 133-159 (1113)
443 PRK03947 prefoldin subunit alp 51.9 1.4E+02 0.003 24.8 11.8 28 62-89 12-39 (140)
444 PTZ00009 heat shock 70 kDa pro 51.9 2.5E+02 0.0054 29.4 12.4 19 163-181 566-584 (653)
445 KOG2176 Exocyst complex, subun 51.8 2.9E+02 0.0063 30.4 13.0 94 79-199 50-143 (800)
446 COG0598 CorA Mg2+ and Co2+ tra 51.8 1.1E+02 0.0023 29.0 9.0 16 226-241 279-295 (322)
447 KOG3647 Predicted coiled-coil 51.5 1.6E+02 0.0035 28.8 10.0 78 61-152 103-180 (338)
448 PF04582 Reo_sigmaC: Reovirus 51.5 13 0.00029 36.4 2.9 103 70-179 28-134 (326)
449 PF04201 TPD52: Tumour protein 51.2 1.8E+02 0.004 26.0 9.7 26 114-142 31-56 (162)
450 PRK14471 F0F1 ATP synthase sub 50.8 1.6E+02 0.0034 25.1 12.7 83 102-189 39-122 (164)
451 KOG1899 LAR transmembrane tyro 50.7 3.5E+02 0.0075 29.6 13.0 37 51-87 113-149 (861)
452 PF04880 NUDE_C: NUDE protein, 50.6 14 0.00031 32.8 2.8 38 92-129 4-41 (166)
453 KOG0289 mRNA splicing factor [ 50.5 1.1E+02 0.0024 31.6 9.2 131 34-195 63-206 (506)
454 KOG3433 Protein involved in me 50.4 1.9E+02 0.0042 26.7 9.9 25 129-153 77-101 (203)
455 cd07624 BAR_SNX7_30 The Bin/Am 50.4 1.8E+02 0.0039 25.8 20.8 89 113-208 97-190 (200)
456 PF07200 Mod_r: Modifier of ru 50.4 1.5E+02 0.0032 24.7 10.4 44 99-145 45-88 (150)
457 PF03961 DUF342: Protein of un 50.3 1.5E+02 0.0033 29.4 10.2 21 67-87 331-351 (451)
458 PRK07353 F0F1 ATP synthase sub 50.3 1.4E+02 0.0031 24.4 12.2 95 102-207 36-131 (140)
459 PF06133 DUF964: Protein of un 50.3 1.2E+02 0.0026 23.6 8.9 72 100-173 2-74 (108)
460 PF05278 PEARLI-4: Arabidopsis 50.2 2.4E+02 0.0053 27.1 12.7 103 106-212 153-262 (269)
461 KOG4572 Predicted DNA-binding 50.1 2.7E+02 0.0058 31.4 12.3 37 164-204 1092-1128(1424)
462 PF05791 Bacillus_HBL: Bacillu 50.1 1.2E+02 0.0025 26.8 8.4 46 129-174 131-180 (184)
463 PRK10698 phage shock protein P 50.1 2E+02 0.0044 26.2 18.8 84 61-144 50-145 (222)
464 PF08776 VASP_tetra: VASP tetr 50.0 42 0.0009 23.7 4.4 27 148-176 4-30 (40)
465 KOG0978 E3 ubiquitin ligase in 49.9 3.7E+02 0.0081 29.2 16.6 153 55-221 488-643 (698)
466 KOG4005 Transcription factor X 49.9 99 0.0022 29.7 8.3 53 91-153 93-145 (292)
467 PF08898 DUF1843: Domain of un 49.9 35 0.00077 25.3 4.2 37 140-176 14-50 (53)
468 KOG2008 BTK-associated SH3-dom 49.7 2.8E+02 0.0062 27.8 14.9 123 70-220 10-153 (426)
469 PF05465 Halo_GVPC: Halobacter 49.7 23 0.0005 23.4 3.0 23 159-181 1-23 (32)
470 PF10191 COG7: Golgi complex c 49.7 1.5E+02 0.0033 31.9 10.7 85 81-182 42-126 (766)
471 PF13094 CENP-Q: CENP-Q, a CEN 49.6 1E+02 0.0023 26.1 7.8 50 106-155 35-84 (160)
472 KOG4657 Uncharacterized conser 49.3 2.4E+02 0.0052 26.8 13.2 48 90-137 36-83 (246)
473 cd07685 F-BAR_Fes The F-BAR (F 49.2 2.4E+02 0.0052 26.7 12.8 84 133-218 69-157 (237)
474 PRK10698 phage shock protein P 48.9 2.1E+02 0.0046 26.1 14.9 37 117-153 36-72 (222)
475 COG0172 SerS Seryl-tRNA synthe 48.8 1.9E+02 0.0042 29.5 10.6 51 120-177 37-88 (429)
476 PF14966 DNA_repr_REX1B: DNA r 48.7 91 0.002 25.2 6.9 56 89-145 41-96 (97)
477 PF04977 DivIC: Septum formati 48.1 87 0.0019 22.8 6.3 12 165-176 39-50 (80)
478 PF06008 Laminin_I: Laminin Do 48.1 2.2E+02 0.0048 26.1 16.3 77 38-114 55-142 (264)
479 TIGR00618 sbcc exonuclease Sbc 48.0 4.2E+02 0.0091 29.3 20.8 169 40-220 312-480 (1042)
480 PF13747 DUF4164: Domain of un 47.9 1.4E+02 0.003 23.7 8.2 32 122-153 35-66 (89)
481 KOG0979 Structural maintenance 47.9 3.7E+02 0.0081 30.5 13.2 63 120-182 637-699 (1072)
482 PF09006 Surfac_D-trimer: Lung 47.8 35 0.00076 24.7 3.8 28 159-186 1-28 (46)
483 PF06005 DUF904: Protein of un 47.8 1.1E+02 0.0023 23.7 6.8 34 115-148 21-54 (72)
484 PF11068 YlqD: YlqD protein; 47.7 1.6E+02 0.0034 25.2 8.5 17 172-188 57-73 (131)
485 PF03938 OmpH: Outer membrane 47.5 1.6E+02 0.0035 24.3 11.3 21 160-180 79-99 (158)
486 PRK10803 tol-pal system protei 47.5 99 0.0021 28.8 7.9 54 154-214 51-104 (263)
487 CHL00118 atpG ATP synthase CF0 47.4 1.8E+02 0.0038 24.8 11.8 86 86-173 47-149 (156)
488 PF10018 Med4: Vitamin-D-recep 47.3 99 0.0022 27.3 7.6 25 189-213 74-98 (188)
489 KOG0921 Dosage compensation co 47.2 28 0.00061 39.0 4.8 22 159-180 1098-1119(1282)
490 PF09755 DUF2046: Uncharacteri 46.8 2.9E+02 0.0064 27.1 21.9 90 61-156 32-122 (310)
491 PF10241 KxDL: Uncharacterized 46.6 1.4E+02 0.0031 23.4 11.1 73 126-218 11-83 (88)
492 cd07627 BAR_Vps5p The Bin/Amph 46.5 2.2E+02 0.0047 25.5 11.9 105 97-204 103-209 (216)
493 PRK09174 F0F1 ATP synthase sub 46.3 2.3E+02 0.0049 25.7 14.4 13 173-185 151-163 (204)
494 KOG0240 Kinesin (SMY1 subfamil 46.3 4E+02 0.0087 28.5 14.3 36 57-92 415-450 (607)
495 PRK15396 murein lipoprotein; P 45.9 1.2E+02 0.0027 23.9 7.0 37 117-153 30-66 (78)
496 PRK13460 F0F1 ATP synthase sub 45.9 2E+02 0.0043 24.8 12.4 92 105-207 50-142 (173)
497 PF10205 KLRAQ: Predicted coil 45.3 1.8E+02 0.0039 24.2 10.0 79 59-158 1-79 (102)
498 KOG3875 Peroxisomal biogenesis 45.2 24 0.00053 34.8 3.6 39 226-267 67-105 (362)
499 KOG4603 TBP-1 interacting prot 45.1 2.5E+02 0.0054 25.8 11.3 97 77-194 79-182 (201)
500 PF10018 Med4: Vitamin-D-recep 44.8 1.7E+02 0.0036 25.9 8.5 66 70-149 5-70 (188)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.74 E-value=0.0064 Score=64.09 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 194 RQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 194 ~qaMEknlisMarEvEKLRaElan 217 (276)
...+.+++-.+..++.+++.++..
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.67 E-value=0.0094 Score=62.86 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 188 IELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
..........++.+..+-.++..|...
T Consensus 472 ~~~~~~l~~l~~~l~~l~~~~~~l~~~ 498 (1164)
T TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQ 498 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444454444444444443
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.59 E-value=0.021 Score=52.77 Aligned_cols=115 Identities=20% Similarity=0.289 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHhhhcccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhH
Q 039268 40 LEEELEIQHAEIQRLLGDN-RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLK 118 (276)
Q Consensus 40 LEe~l~~Q~~EiqrLl~dN-qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk 118 (276)
||..=..-..+|..|.... .........+..+|..+.+.|..+....+.+..+.+.-..++-+=-.|++.+......+.
T Consensus 23 LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le 102 (312)
T PF00038_consen 23 LEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLE 102 (312)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444442 223345667888888888888888888888888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
.|+..++.++......|-+|-.+++.+..||.-+..
T Consensus 103 ~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~ 138 (312)
T PF00038_consen 103 EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQ 138 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999766553
No 4
>PRK09039 hypothetical protein; Validated
Probab=97.58 E-value=0.0085 Score=57.67 Aligned_cols=147 Identities=24% Similarity=0.321 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
.-|.++|...++||..|...|.++-.--. ...-.+=+++..+.+++.+.+..|.+|..... .+.....++.+++
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~ 118 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRA 118 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHH
Confidence 45666777777777777666665432222 22233334444555555555555544443322 1122223444444
Q ss_pred HHHHHHHHHHH----hhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 039268 143 QTLQKDLAKLQ----ADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSM----AREVEKLRAE 214 (276)
Q Consensus 143 q~l~~eL~r~~----ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisM----arEvEKLRaE 214 (276)
..+..+|...+ ....+|-.|+++|++||..|..+-++++.-+....+.-.+...+++.|-.. +.|++++|.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44444444333 345578889999999999999999999999998899999999999888766 4567888877
Q ss_pred h
Q 039268 215 L 215 (276)
Q Consensus 215 l 215 (276)
+
T Consensus 199 ~ 199 (343)
T PRK09039 199 F 199 (343)
T ss_pred H
Confidence 7
No 5
>PRK11637 AmiB activator; Provisional
Probab=97.58 E-value=0.049 Score=53.19 Aligned_cols=80 Identities=11% Similarity=0.152 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 128 VQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 128 ~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
++.+...+++|..+.+.+..++..+....+.+-.-+++|+..+.|.+...+.++-+++.....+.+++.-++.|-..-.+
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555566666666655566666666666666666666555555444333
No 6
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.35 E-value=0.11 Score=54.63 Aligned_cols=197 Identities=16% Similarity=0.295 Sum_probs=116.1
Q ss_pred hhhHHHHHHHHHHHhhhcc-cc---c---cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--HH--------HHHHH
Q 039268 38 ALLEEELEIQHAEIQRLLG-DN---R---RLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ--EV--------HVRDL 100 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~-dN---q---RLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~--e~--------q~R~l 100 (276)
.-||..+..-..||+..-. ++ . -|-...-.||.||...++|...|..-+..+..-+ |. ++++.
T Consensus 421 ~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 421 SRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456555555555544311 11 0 1333345677778888887777765555443322 23 33333
Q ss_pred HHhhhhhhhhhhhc--------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 039268 101 VEKGLKLEADLRAT--------------------------EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ- 153 (276)
Q Consensus 101 ~ek~~KmEAelra~--------------------------e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~- 153 (276)
-++...+|+.|.+- |.+|+-..++..|+++|-..-+....++..|.+|++.++
T Consensus 501 ~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334333221 235555555556666655555555555555555543222
Q ss_pred --hh-hcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039268 154 --AD-NQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELME-------QRQAMEKNLVSMAREVEKLRAELTNFDGRPW 223 (276)
Q Consensus 154 --ad-~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E-------q~qaMEknlisMarEvEKLRaElanae~r~~ 223 (276)
.| .+-+.+|...|-.|+..-+|+=...-.|.+.+.|+.- |+..-+..+..=-+||+-|++.|+..- |.
T Consensus 581 ~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~--av 658 (697)
T PF09726_consen 581 YEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLL--AV 658 (697)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc
Confidence 22 3457778888888999999999999999998888763 666667777777889999999888765 33
Q ss_pred CCCCCCCCCCCCC
Q 039268 224 GVGGPYGMNFSGV 236 (276)
Q Consensus 224 ~~g~~Yg~~yg~p 236 (276)
-++.+|+++.+.+
T Consensus 659 ~p~~~~~~~~~~~ 671 (697)
T PF09726_consen 659 MPSDSYCSAITPP 671 (697)
T ss_pred CCccccccCCCCC
Confidence 4445666444433
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.19 E-value=0.085 Score=54.26 Aligned_cols=33 Identities=33% Similarity=0.369 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 187 NIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 187 ~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
+..+.+|++.++.-+-+--++++.|+.||..+-
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~ 317 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAV 317 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888888887653
No 8
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.16 E-value=0.084 Score=53.43 Aligned_cols=105 Identities=27% Similarity=0.311 Sum_probs=63.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ-----------IPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq-----------ipal~aEie~lrqElqr~Raa~Ey 182 (276)
...++.||.++..++++....-..|...|..|..||.+.+.++.. |..|..|++.++.||.-+++...-
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~ 362 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEK 362 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 566788888888888888877778888888888887777766544 556666666666666665555433
Q ss_pred HHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhc
Q 039268 183 EKKANIELMEQRQ-------AMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 183 EKk~~~e~~Eq~q-------aMEknlisMarEvEKLRaElana 218 (276)
=++.-.++...+| ...+..-.+-.|+.+++.|+.++
T Consensus 363 ~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ 405 (522)
T PF05701_consen 363 AKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQT 405 (522)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 22333444444555555554443
No 9
>PRK11637 AmiB activator; Provisional
Probab=97.09 E-value=0.23 Score=48.56 Aligned_cols=61 Identities=13% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHH
Q 039268 128 VQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELM 191 (276)
Q Consensus 128 ~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~ 191 (276)
+..|+..++++..++....++|...+ +.+-.-+++++.+..++..-++.++-+++.....+
T Consensus 161 l~~i~~~d~~~l~~l~~~~~~L~~~k---~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l 221 (428)
T PRK11637 161 FGYLNQARQETIAELKQTREELAAQK---AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTL 221 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555555544333 33344555666666666666666666655543333
No 10
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.09 E-value=0.058 Score=51.24 Aligned_cols=152 Identities=20% Similarity=0.330 Sum_probs=117.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHhhhhHHHHHHH-HHHhhhhhhhhhhh-----chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELH-RMNLVIGEIRAEQEVHVRD-LVEKGLKLEADLRA-----TEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 70 qeLaaaq~Elq-rl~~~~~~i~ae~e~q~R~-l~ek~~KmEAelra-----~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
+|-..+-.|++ -|......||+=.-++.+. -|+-..++.-.|+. .+.|+.+...+...++.|......|....
T Consensus 107 ~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~ 186 (325)
T PF08317_consen 107 REYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERK 186 (325)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 3345666666555555443 35555555555543 47889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchh-HHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 143 QTLQKDLAKLQADNQQIP-LLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 143 q~l~~eL~r~~ad~qqip-al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
+.++.|+.++++-...+. .=+.||..+|+||......|+.-|+.-.++-.+++..+..+-.+..+..+|.++|+++++.
T Consensus 187 ~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~ 266 (325)
T PF08317_consen 187 AELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKI 266 (325)
T ss_pred HHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887665544 2357889999999999999999999999999999999999999999999999999998743
No 11
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.05 E-value=0.093 Score=53.98 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhccCCCCC
Q 039268 205 AREVEKLRAELTNFDGRPWG 224 (276)
Q Consensus 205 arEvEKLRaElanae~r~~~ 224 (276)
.+.|++|+..|.....--|.
T Consensus 444 ~~yi~~Le~r~~~~~~~~~~ 463 (546)
T PF07888_consen 444 LEYIERLEQRLDKVADEKWK 463 (546)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 34488888887766443343
No 12
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=97.03 E-value=0.099 Score=47.72 Aligned_cols=147 Identities=21% Similarity=0.316 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAE----------QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae----------~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
..-|||.|-.+|-||-.=.+.|.++++- +|.++.++-+....-.. ..+....||++...|+.-|--.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~---ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQL---ELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH---hHHHhHHHHHHHhCHHHHhhhh
Confidence 4457777777777666555555555542 23344444332222222 1223555666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHH------------------Hh--hhcchhHHHHHHHHHHHHHHHHH-------hhhhhHHhhh
Q 039268 135 RNELNGKVQTLQKDLAKL------------------QA--DNQQIPLLRAEIDGLHQELMHAR-------AAVDYEKKAN 187 (276)
Q Consensus 135 RqeL~~qvq~l~~eL~r~------------------~a--d~qqipal~aEie~lrqElqr~R-------aa~EyEKk~~ 187 (276)
-..|..++..|..++..+ +. .-.-+..|+.++|.|+.||...| ..|+.|+..-
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 555555555555555554 11 12347778899999999988654 5888888876
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 039268 188 IELMEQR----QAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 188 ~e~~Eq~----qaMEknlisMarEvEKLRaE 214 (276)
.+--+.+ +-+..|+|.|-+=-..|-.+
T Consensus 169 ~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 169 QEEKEKVIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544433 45677899997655444443
No 13
>PRK02224 chromosome segregation protein; Provisional
Probab=96.97 E-value=0.14 Score=53.79 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaElan 217 (276)
..++..++.+-.+-.|++.+++.|..
T Consensus 377 ~~l~~~~~~l~~l~~el~el~~~l~~ 402 (880)
T PRK02224 377 EAVEDRREEIEELEEEIEELRERFGD 402 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444445555555443
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.96 E-value=0.11 Score=48.37 Aligned_cols=131 Identities=25% Similarity=0.347 Sum_probs=91.5
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH----------HHHHHHHHhhhhhhhhhhhchhhHH
Q 039268 50 EIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE----------VHVRDLVEKGLKLEADLRATEPLKK 119 (276)
Q Consensus 50 EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e----------~q~R~l~ek~~KmEAelra~e~lk~ 119 (276)
.||.|-..+-||..-.--.+.+|..++-|+-+++....+++.+.| ..++++=+|+.+.|-.+-++--.+
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~- 89 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER- 89 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH-
Confidence 455566666666666666777778888888777777777776655 566777777788887775555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 184 (276)
|+.++..|++.+..-...|..++..++.++.+++. ++-.++..+..++.++--++.+++.+=
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~---~i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEK---EIEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888777763 245555556666666666666655543
No 15
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.87 E-value=0.039 Score=52.41 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=24.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
.-|...+..|++|.......+..+......++..++
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~ 187 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666677777777777777777766666655544
No 16
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.80 E-value=0.049 Score=57.30 Aligned_cols=27 Identities=37% Similarity=0.361 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
.+|.||.|++.|...|..--++|+...
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aR 483 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQAR 483 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333333333
No 17
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.73 E-value=0.048 Score=45.84 Aligned_cols=72 Identities=24% Similarity=0.379 Sum_probs=60.5
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+|-+.||.. ..|+.+++.++.+|...|..|..++-.++.+...+++..++++.|+.+++.|.+.++-+--.|
T Consensus 20 ~L~s~lr~~---E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 20 RLQSQLRRL---EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444544443 349999999999999999999999999999999999999999999999999998877665554
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.29 Score=53.79 Aligned_cols=28 Identities=21% Similarity=0.519 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 125 RAEVQKLNNLRNELNGKVQTLQKDLAKL 152 (276)
Q Consensus 125 raE~q~L~~~RqeL~~qvq~l~~eL~r~ 152 (276)
..++..+...++.+...+..+..++..+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1163)
T COG1196 778 KEEIEELEEKRQALQEELEELEEELEEA 805 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 19
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.65 E-value=0.56 Score=47.05 Aligned_cols=105 Identities=23% Similarity=0.314 Sum_probs=70.8
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHH
Q 039268 49 AEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEV 128 (276)
Q Consensus 49 ~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~ 128 (276)
.|++.-..|-+-.-....++++++..|+||+.++.....+++++ +--|.+.-.++++++.+.-+-.++|+ +-+
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ---~s~ 181 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQ---ASA 181 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 45555555655555667788999999999999999999988876 45588888899998888655555554 223
Q ss_pred HHHHHHHHHHHH-----------------HHHHHHHHHHHHHhhhcchh
Q 039268 129 QKLNNLRNELNG-----------------KVQTLQKDLAKLQADNQQIP 160 (276)
Q Consensus 129 q~L~~~RqeL~~-----------------qvq~l~~eL~r~~ad~qqip 160 (276)
-.|-..+++|.. .+|..++||++..+-.||..
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~ 230 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTA 230 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 35666667776666655543
No 20
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.60 E-value=0.31 Score=48.01 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=18.2
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 158 QIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 158 qipal~aEie~lrqElqr~Raa~Ey 182 (276)
.+..+..+++.++.++..+++.+.-
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666677778888888777777664
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.58 E-value=0.32 Score=56.42 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=103.2
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 130 (276)
+...-.-|-.|=-+...|+||+..+.-|+++....+..+..-.-.-=--|-+.-.++|.=....+....|+.+...++++
T Consensus 1395 ~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~k 1474 (1930)
T KOG0161|consen 1395 IEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQK 1474 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444555567778888888888888888766665443322211122222222232223445677788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh----hhHHHHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK----ANIELMEQRQAMEKNLVSMAR 206 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk----~~~e~~Eq~qaMEknlisMar 206 (276)
|...=.++..++..+.++-..++.++..+-.-..|...-.+|+++.+.+++.||. +-.|.-...++=|-+-...--
T Consensus 1475 l~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~ 1554 (1930)
T KOG0161|consen 1475 LKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQL 1554 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888843 333333333333333333333
Q ss_pred HHHHHHHH
Q 039268 207 EVEKLRAE 214 (276)
Q Consensus 207 EvEKLRaE 214 (276)
++.++|.|
T Consensus 1555 ~~~~~r~e 1562 (1930)
T KOG0161|consen 1555 ELQQLRSE 1562 (1930)
T ss_pred HHHHHHHH
Confidence 44444444
No 22
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.58 E-value=0.36 Score=54.84 Aligned_cols=157 Identities=15% Similarity=0.171 Sum_probs=119.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------------------HHHHHHHhhhhhhhhhhhchhhHHHHHH
Q 039268 62 VEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEV------------------HVRDLVEKGLKLEADLRATEPLKKEAVQ 123 (276)
Q Consensus 62 aatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~------------------q~R~l~ek~~KmEAelra~e~lk~El~q 123 (276)
..+|..|+++...+++..+.+.+.+-++.-=.+. -.-.|=+++.++|. ..+.++.++.+
T Consensus 934 p~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~---~~~~areql~q 1010 (1486)
T PRK04863 934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQ---ERTRAREQLRQ 1010 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4799999999999999999988777665432210 00111112222222 33456667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH---------HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPL---------LRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipa---------l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
++.+.++.......+...++...++|..++.+++.++. +++.-|.|.+.|...|+-..+--|.....-..+
T Consensus 1011 aq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EI 1090 (1486)
T PRK04863 1011 AQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEM 1090 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77777777777778888888888888888888887753 334448999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElanae~r 221 (276)
+.++++|-...++...++++|.++.++
T Consensus 1091 e~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1091 DNLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 23
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.56 E-value=0.7 Score=43.54 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 160 PLLRAEIDGLHQELMHARAAVDYEKKAN-IELMEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 160 pal~aEie~lrqElqr~Raa~EyEKk~~-~e~~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
-.++++++.+++++..+++.+.-.+... .+..++....+.++..+..+++.++..+.+..=++
T Consensus 213 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~A 276 (423)
T TIGR01843 213 GRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRS 276 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEEC
Confidence 3344455555555555555544333322 23334455666666666667777777777665554
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=96.56 E-value=0.33 Score=50.99 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhhhcccc--ccchhhHHHHHHHHHHHHHHHHHHH
Q 039268 40 LEEELEIQHAEIQRLLGDN--RRLVEDRMAMQRELAAAKEELHRMN 83 (276)
Q Consensus 40 LEe~l~~Q~~EiqrLl~dN--qRLaatHvaLrqeLaaaq~Elqrl~ 83 (276)
+-..+..|..++.+.+.+- +.+...--.+++++.....++..+.
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~l~el~~~i~~~~ 226 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYE 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554 3333333344444444444433333
No 25
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.56 E-value=0.6 Score=49.48 Aligned_cols=175 Identities=26% Similarity=0.343 Sum_probs=97.5
Q ss_pred CCCChhhhHHHHHHHHHHH----hhhccccc------c----chhhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHH
Q 039268 33 PPPHPALLEEELEIQHAEI----QRLLGDNR------R----LVEDRMAMQRELAAAK-EELHRMNLVIGEIRAEQEVHV 97 (276)
Q Consensus 33 ppp~P~~LEe~l~~Q~~Ei----qrLl~dNq------R----LaatHvaLrqeLaaaq-~Elqrl~~~~~~i~ae~e~q~ 97 (276)
||-|-.++|-+...|+--+ +....|-+ | -...+..=.-||..-| |||+||-.-...++.-.-.|-
T Consensus 14 ~~~~~~~~e~r~~~qr~~~~~~e~~~~~~~~~p~~r~Rs~~~~~s~~lsqqaelis~qlqE~rrle~e~~~lre~sl~qk 93 (739)
T PF07111_consen 14 PPAHQDVSERRRENQRPQVTMWEQDVSGDGQEPGRRGRSLELEGSQALSQQAELISRQLQELRRLEEEVRALRETSLQQK 93 (739)
T ss_pred CccchhHHHhhhhhcCchhHHHHhcccccccCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789998887776222 22223322 1 1223333344677777 999999887776665544455
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~R 177 (276)
.-|-..++-||+--++-.+-++|...+|+=+-+-...|+-|-.-.|.--.|+++.+ +.+|..|.++++.+=
T Consensus 94 mrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~H---------qeql~~Lt~aHq~~l 164 (739)
T PF07111_consen 94 MRLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLH---------QEQLSSLTQAHQEAL 164 (739)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 55555555555555555555566655555555555566666433333333333333 357788888877654
Q ss_pred hhhhhHHhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhcc
Q 039268 178 AAVDYEKKANIELMEQRQAM-------EKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 178 aa~EyEKk~~~e~~Eq~qaM-------EknlisMarEvEKLRaElanae 219 (276)
+.+ ++..-++-+.++.| -|+|...-+|.+-||.+|.++-
T Consensus 165 ~sL---~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~ 210 (739)
T PF07111_consen 165 ASL---TSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQ 210 (739)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 332 12222333333333 3566666777888887776653
No 26
>PRK03918 chromosome segregation protein; Provisional
Probab=96.56 E-value=0.36 Score=50.48 Aligned_cols=72 Identities=24% Similarity=0.394 Sum_probs=35.6
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL 173 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl 173 (276)
+...+++.++...+..+.++..+..+++.|...-+.|..++..+.+++..+...+.++..+..+++.+...+
T Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~ 292 (880)
T PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444445555555555555555555555555555555555555555554444444444444433
No 27
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.53 E-value=0.53 Score=42.82 Aligned_cols=87 Identities=21% Similarity=0.387 Sum_probs=54.2
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 130 (276)
|..|=..|+||+..-..|+..+..+.+...+|..-|.+++. +++.+= +. +.-..+|+.|+..++..+..
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~----q~~s~Q-qa------l~~aK~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRK----QLKSLQ-QA------LQKAKALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HH------HHHHHHHHHHHHHHHHHHHH
Confidence 34466779999999999999999999999999888887654 344331 11 11223355555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~e 148 (276)
|.....-|.++...+.+|
T Consensus 79 lEE~~~~L~aq~rqlEkE 96 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555544444444444444
No 28
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.49 E-value=0.23 Score=42.91 Aligned_cols=111 Identities=23% Similarity=0.284 Sum_probs=81.8
Q ss_pred HHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 100 LVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 100 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
|-+++..||+||...+. +...+-.|+..--+.-..|..++..+|++|.++..|+ -.++.|-+.|-++++.-..-
T Consensus 22 le~~v~~LEreLe~~q~---~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL---~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 22 LEDHVESLERELEMSQE---NKECLILDAENSKAEIETLEEELEELTSELNQLELEL---DTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45667788887766543 3333444444444555567778888888888888776 56778889999999998888
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 039268 180 VDYEKKANIELMEQRQAMEKNLVSMARE----VEKLRAELT 216 (276)
Q Consensus 180 ~EyEKk~~~e~~Eq~qaMEknlisMarE----vEKLRaEla 216 (276)
|..-...+.+....++.-|.-.+-|-.+ |+.|.+++.
T Consensus 96 v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 96 VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888887777665 777777764
No 29
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.48 E-value=0.31 Score=54.24 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHHHHHH---HhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 159 IPLLRAEIDGLHQELMHA---RAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 159 ipal~aEie~lrqElqr~---Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~ 220 (276)
++.+..+.+.+..+|.++ -..+.-++-...+.+.+.+..+..|..+..++++|++++...+.
T Consensus 845 ~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~ 909 (1311)
T TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKE 909 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666766666 44444555555566777788888888899998888888877654
No 30
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.41 E-value=0.46 Score=39.71 Aligned_cols=123 Identities=24% Similarity=0.269 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
|+-++..+...+......+..++.|-+.+..-.-+-=-|-|.||-.+...-++|.+++.++..+.....+|..+++....
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444445555555555555444444445666666666555667777777777777777777777777777
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 148 DLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
.|....... ..+-..|..|+.-+..-|+.-.+-|.=+..|+..
T Consensus 88 ~l~~~e~sw------~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 88 ELEESEASW------EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776655432 3455667777777777777777777766666654
No 31
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.40 E-value=0.76 Score=50.64 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
+..+..+++.++.++..+-..+..-+....+.-.+....+.++..+..++++++..+...
T Consensus 858 ~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777778888888888888888888888887777643
No 32
>PRK03918 chromosome segregation protein; Provisional
Probab=96.33 E-value=0.73 Score=48.25 Aligned_cols=18 Identities=6% Similarity=0.309 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~ 146 (276)
+.|...++.+..+++.+.
T Consensus 310 ~~l~~~~~~l~~~~~~l~ 327 (880)
T PRK03918 310 REIEKRLSRLEEEINGIE 327 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 33
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.30 E-value=0.4 Score=53.36 Aligned_cols=54 Identities=13% Similarity=0.272 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 167 DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 167 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
..+.+|+..++..+.--...++.++.+++.++.++-.+-.|++. .+..|++++.
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ry 1103 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKY 1103 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHH
Confidence 56677777888888888888899999999999999999999854 5666666653
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.23 E-value=0.52 Score=50.45 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=69.9
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHH--------------------HHHhhhhHHHHHHHHHHh
Q 039268 44 LEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLV--------------------IGEIRAEQEVHVRDLVEK 103 (276)
Q Consensus 44 l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~--------------------~~~i~ae~e~q~R~l~ek 103 (276)
+..-..+.+.+-.+|+++..+--+|+.+| -++.|+.+|... +..+++|+|.+.+++-.-
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l 133 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL 133 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888999999999999999999 999999999875 345667888777777665
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 104 GLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 104 ~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
..++|.-=--.+.+++++..+..+|.+|...
T Consensus 134 r~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 134 RKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543336678888888888888888774
No 35
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.19 E-value=0.55 Score=47.65 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039268 193 QRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaEl 215 (276)
..++||..|..+-+|++.-++--
T Consensus 408 ~i~t~E~rL~aa~ke~eaaKasE 430 (522)
T PF05701_consen 408 AIKTAEERLEAALKEAEAAKASE 430 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888988888888877653
No 36
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.19 E-value=0.9 Score=46.99 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHH
Q 039268 121 AVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKN 200 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn 200 (276)
+..++.++......--+|-+++..+......+..|+ --|++|+..|+.+|.++|..++-|.-.++++.-+.|.+.+.
T Consensus 136 ~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~---~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 136 RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDEL---KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333344444444444444455555555544444443 56789999999999999999999999999999999999999
Q ss_pred HHHHH----HHHHHHHHHh
Q 039268 201 LVSMA----REVEKLRAEL 215 (276)
Q Consensus 201 lisMa----rEvEKLRaEl 215 (276)
|--|- .||..++.-+
T Consensus 213 l~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 213 LAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred HHHHHhccHHHHHHHHHHH
Confidence 98887 5566665543
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.14 E-value=0.4 Score=44.31 Aligned_cols=85 Identities=25% Similarity=0.346 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
+..|+.++|..|..+...+..|..++..+..++..++... -...+....|..|+..+|..++-+...+.++-.+.++
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~---e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY---EEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 3444444444444444444444444444444444333222 1123444455555555555555555555555555555
Q ss_pred HHHHHHHH
Q 039268 197 MEKNLVSM 204 (276)
Q Consensus 197 MEknlisM 204 (276)
++..|-.+
T Consensus 129 L~eEl~fl 136 (312)
T PF00038_consen 129 LKEELEFL 136 (312)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554444
No 38
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=96.07 E-value=1.2 Score=45.16 Aligned_cols=126 Identities=33% Similarity=0.347 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhchhhHH-HHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHH---HHHH----
Q 039268 89 IRAEQEVHVRDLVEKGLKLEADLRATEPLKK-EAVQLRAEVQKL-NNLRNE-------LNGKVQTLQKD---LAKL---- 152 (276)
Q Consensus 89 i~ae~e~q~R~l~ek~~KmEAelra~e~lk~-El~q~raE~q~L-~~~Rqe-------L~~qvq~l~~e---L~r~---- 152 (276)
+..|.|-++-.|+.|+.|+|++-- +|+ -|.|+|-|+=.| +..-|| |-.+++.|.+| |++-
T Consensus 152 leqeqef~vnKlm~ki~Klen~t~----~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqp 227 (552)
T KOG2129|consen 152 LEQEQEFFVNKLMNKIRKLENKTL----LKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQP 227 (552)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhH----HhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 457888999999999999998521 111 234444443222 223333 33344444444 1110
Q ss_pred ------Hhhhcchh--------HHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 039268 153 ------QADNQQIP--------LLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVS-MAREVEKLRAELTN 217 (276)
Q Consensus 153 ------~ad~qqip--------al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis-MarEvEKLRaElan 217 (276)
=.|+-.|| +++.=|+-|+.|+-|+|+.+--=.|-+.+.+-|..+=|+++-. -.|+-+||.-|+..
T Consensus 228 vs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~er 307 (552)
T KOG2129|consen 228 VSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELER 307 (552)
T ss_pred ccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 01233333 4667788999999999988887777777777776666655532 23445555555544
Q ss_pred c
Q 039268 218 F 218 (276)
Q Consensus 218 a 218 (276)
.
T Consensus 308 R 308 (552)
T KOG2129|consen 308 R 308 (552)
T ss_pred H
Confidence 3
No 39
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.03 E-value=0.6 Score=48.40 Aligned_cols=122 Identities=20% Similarity=0.286 Sum_probs=95.5
Q ss_pred HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 039268 95 VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 95 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElq 174 (276)
-+-|+|++++.-.|++=...+.++..-.-++.|+.++.++=..+..+.+.+.+.|.+++++. -....|++.|+++..
T Consensus 242 ~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Ei---e~kEeE~e~lq~~~d 318 (581)
T KOG0995|consen 242 KTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEI---EEKEEEIEKLQKEND 318 (581)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45678888888777777777889988888999999999999999999999999999988775 556678889999998
Q ss_pred HHHhhhhhHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 175 HARAAVDYEKKANIELMEQR----QAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 175 r~Raa~EyEKk~~~e~~Eq~----qaMEknlisMarEvEKLRaElanae~ 220 (276)
.++.-||.- +-..+-+++| +..++++.-|..++++|+-++=+.+-
T Consensus 319 ~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 319 ELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 888888765 4445555544 45677777777777777776655443
No 40
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.96 E-value=0.35 Score=49.38 Aligned_cols=173 Identities=14% Similarity=0.271 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHh----hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH--------HHHHHHHHHhhhhh
Q 039268 40 LEEELEIQHAEIQ----RLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ--------EVHVRDLVEKGLKL 107 (276)
Q Consensus 40 LEe~l~~Q~~Eiq----rLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~--------e~q~R~l~ek~~Km 107 (276)
+...+-.|-.|++ .+.. +.+.-.|..+-.+|...+..|..+...+..+.-+. ..+|-.||+ .|
T Consensus 220 l~~~~P~ql~eL~~gy~~m~~--~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~l 294 (560)
T PF06160_consen 220 LQKEFPDQLEELKEGYREMEE--EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---IL 294 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HH
Confidence 3445555555544 3333 33556677888888888888888877777655433 244555555 57
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 108 EADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 108 EAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
|.|+.|...+...+..+..-+..+...-++|..++..+.+--.=...+...+-.+..+|+.+...+......++..+..+
T Consensus 295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y 374 (560)
T PF06160_consen 295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY 374 (560)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 88888888888888877777777666666666666666655333345677777888888999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 188 IELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
.+..+.++.+.++|..+-.+..++...|.+
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~ 404 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQS 404 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777666665555544444
No 41
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.95 E-value=0.34 Score=49.44 Aligned_cols=162 Identities=14% Similarity=0.235 Sum_probs=91.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHhhh----hhhhhhhhchhhHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE-VHVRDLVEKGL----KLEADLRATEPLKKEAVQLRAEVQKLNN 133 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e-~q~R~l~ek~~----KmEAelra~e~lk~El~q~raE~q~L~~ 133 (276)
+...-+|..+-.+|...+..|......+..++-+.= ..+..+-+++- .||.|+.|..-+......+...+..+..
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455667778888888888888887777776655442 22333333332 3455555555555555544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH-------HHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Q 039268 134 LRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQE-------LMHARAAVDYEKKANIELMEQRQAMEKNLVSMAR 206 (276)
Q Consensus 134 ~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqE-------lqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMar 206 (276)
.-++|..+++.+.+.-.-...|+..+-.+..+|+.+... +......|..-++...++.++...+++....+..
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443111122333344444444444444 4444444555556666777777777777788887
Q ss_pred HHHHHHHHhhhccC
Q 039268 207 EVEKLRAELTNFDG 220 (276)
Q Consensus 207 EvEKLRaElanae~ 220 (276)
.|..||.+...+.+
T Consensus 405 ~l~~Lrk~E~eAr~ 418 (569)
T PRK04778 405 MLQGLRKDELEARE 418 (569)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888877766644
No 42
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.85 E-value=0.4 Score=41.85 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=23.0
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 52 QRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 52 qrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
..++.+|-..+.+.++-|.++... ...+.+.+..+++|-.
T Consensus 29 ~~~l~~~~~~~~~~~vtk~d~e~~---~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 29 REVLNDSLEKVAQDLVTKSDLENQ---EYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345666655555666666666553 3344466666666654
No 43
>PF13514 AAA_27: AAA domain
Probab=95.81 E-value=1.8 Score=47.38 Aligned_cols=134 Identities=25% Similarity=0.320 Sum_probs=84.3
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHhhhhhhhhhhhc-------h
Q 039268 48 HAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE-----VHVRDLVEKGLKLEADLRAT-------E 115 (276)
Q Consensus 48 ~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e-----~q~R~l~ek~~KmEAelra~-------e 115 (276)
..|+++=+.+..--+.+...|++++..++++++.+...+..++.+.. .++..++.....++++|-.. +
T Consensus 159 l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p~ 238 (1111)
T PF13514_consen 159 LKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFPE 238 (1111)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCCh
Confidence 33444444444555677788888888888888888888888888766 55566777777777776633 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELN-----------------------GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQE 172 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~-----------------------~qvq~l~~eL~r~~ad~qqipal~aEie~lrqE 172 (276)
.....+.++..++..+......+. ..|..|...+.......+.+|.+..++..++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~~ 318 (1111)
T PF13514_consen 239 DGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEAE 318 (1111)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333333333333333333 334445555555666677788888888888888
Q ss_pred HHHHHhhhh
Q 039268 173 LMHARAAVD 181 (276)
Q Consensus 173 lqr~Raa~E 181 (276)
+..+-+.+.
T Consensus 319 ~~~~~~~lg 327 (1111)
T PF13514_consen 319 LRALLAQLG 327 (1111)
T ss_pred HHHHHHhcC
Confidence 877766665
No 44
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.81 E-value=0.43 Score=41.24 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=20.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
.++...-..+++.|...++|+..+...+.+...+-+
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666666665554444443
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.75 E-value=1.2 Score=44.09 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQTLQKDLA 150 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~~eL~ 150 (276)
..|...+++|..++..+...+.
T Consensus 302 ~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 302 TKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.72 E-value=1.9 Score=40.67 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElanae~r 221 (276)
...+..+..+..++.++++++..++..
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566667777777777776543
No 47
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.71 E-value=1.1 Score=44.34 Aligned_cols=20 Identities=20% Similarity=0.458 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 039268 162 LRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~E 181 (276)
|...++.++.++......+.
T Consensus 304 l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 304 IKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 48
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.62 E-value=0.88 Score=44.80 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 132 NNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 132 ~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
.+....|..++..+.+++.+++.+.+++|....|+..|..|+.-.+..|
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y 371 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNY 371 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555556666666666666666666655555555443
No 49
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.60 E-value=1.2 Score=41.53 Aligned_cols=132 Identities=24% Similarity=0.289 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 72 LAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK 151 (276)
Q Consensus 72 Laaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r 151 (276)
|+....++-++..-+..++.+-+..--++-.....+++=--+.+.|+.++-+...|++++..-...+..++...+.+ ..
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~-~e 90 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE-RE 90 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 33444444444444443333333322223233333333333444488888888888888777666666655333322 22
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHH
Q 039268 152 LQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSM 204 (276)
Q Consensus 152 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisM 204 (276)
+.+=..-+-.++..+.+|..||.++.-.++.-.+--.++.+....+|+|+...
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233445556667777777777777666666677777888888877644
No 50
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.59 E-value=2.9 Score=42.05 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 039268 226 GGPYGMN 232 (276)
Q Consensus 226 g~~Yg~~ 232 (276)
|.+|.+.
T Consensus 273 ~~~~~~~ 279 (420)
T COG4942 273 GETYKPT 279 (420)
T ss_pred CCCcCCC
Confidence 4555443
No 51
>PRK09039 hypothetical protein; Validated
Probab=95.51 E-value=2.3 Score=41.18 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHhhh---ccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 38 ALLEEELEIQHAEIQRL---LGDNRRLVEDRMAM-QRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrL---l~dNqRLaatHvaL-rqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
-+|.+.|..+..|+.+| +.+ |+ ....| ++....++++|..|......++++++
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~---L~-e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~ 98 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAE---LA-DLLSLERQGNQDLQDSVANLRASLSAAEAERS 98 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---HH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877777 333 22 22222 23445555566666655555555554
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.51 E-value=0.39 Score=46.10 Aligned_cols=107 Identities=21% Similarity=0.298 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH-HHHHHHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLL-RAEIDGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal-~aEie~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
.+.|+.+...+..+++.+...--+|....+.+..|+..++.-...+-.. ..|++.+|.+|...-..++.-++.-.++-+
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555566665555555555555555544433322111110 123344444444444444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 193 QRQAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaElanae~ 220 (276)
|++..+..+-....+...++.+|+.+++
T Consensus 233 ~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 233 ELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555544
No 53
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.39 E-value=2.3 Score=49.74 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAME 198 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 198 (276)
+.|+.|.++|..-|++-.-.+|.+.++.+.+.+..
T Consensus 1104 ~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1104 ARIKELEEELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 54
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.33 E-value=0.89 Score=52.58 Aligned_cols=160 Identities=23% Similarity=0.298 Sum_probs=113.8
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHH
Q 039268 50 EIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 50 EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q 129 (276)
++.-+-.||.||-.+|..+.+++..++..|-...+-- ..-+....+.-+++.++.-|=. |+.-=..+|.|..
T Consensus 1168 k~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~vNl-------l~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1168 KLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEVNL-------LRESNKVLREENE 1239 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHHHH-------HHHhHHHHHHHHH
Confidence 3444566777777777666666665554443332111 0113334555555555554444 5555556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHH-HHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKN-LVSMAREV 208 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn-lisMarEv 208 (276)
.+..-.|||..+++.+..|+..++.++ ..++++|+....|+-.++...+-=|+-+.+++++-+--.+| +-....||
T Consensus 1240 ~~~~k~qEl~~~i~kl~~el~plq~~l---~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei 1316 (1822)
T KOG4674|consen 1240 ANLEKIQELRDKIEKLNFELAPLQNEL---KELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEI 1316 (1822)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 777778999999999999999999887 56788999999999999999999999999999996555544 55677799
Q ss_pred HHHHHHhhhccC
Q 039268 209 EKLRAELTNFDG 220 (276)
Q Consensus 209 EKLRaElanae~ 220 (276)
.+|..||.+.++
T Consensus 1317 ~~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1317 SRLKEELEEKEN 1328 (1822)
T ss_pred HHHHHHHHHHHH
Confidence 999999997764
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.30 E-value=1.9 Score=45.20 Aligned_cols=149 Identities=20% Similarity=0.308 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhhhhhhhhhhch-----h-hHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQEV---HVRDLVEKGLKLEADLRATE-----P-LKKEAVQLRAEVQKLNNLRN 136 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~---q~R~l~ek~~KmEAelra~e-----~-lk~El~q~raE~q~L~~~Rq 136 (276)
.-|+.+-+..++.++-|+.-+..++.|++. +|.+|=..+.+|...+...- + ....-.+++.|++.|.....
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 458888889999999999999999999984 45555566666665544221 0 11112356666666666666
Q ss_pred HHHHHHHHHHHH---HHHHH-hhhcchhHHH----------HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKD---LAKLQ-ADNQQIPLLR----------AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLV 202 (276)
Q Consensus 137 eL~~qvq~l~~e---L~r~~-ad~qqipal~----------aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli 202 (276)
.|.++++...++ |.++. .--.+|-.+. .+...|-..++.-++++----.-|-++-+|+..|+..+|
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv 177 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV 177 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 666666655433 22221 1112222222 333344444445555555555667888899999999999
Q ss_pred HHHHH----HHHHHHH
Q 039268 203 SMARE----VEKLRAE 214 (276)
Q Consensus 203 sMarE----vEKLRaE 214 (276)
.|..| ..+|-+|
T Consensus 178 ~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 178 KLTNENMELTSALQSE 193 (617)
T ss_pred HHHHhhhHhhHHHHHH
Confidence 98887 4555444
No 56
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.29 E-value=0.45 Score=40.01 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=66.2
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH
Q 039268 111 LRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL 190 (276)
Q Consensus 111 lra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~ 190 (276)
+..++-|...|.+..+|+..|...-..|..+-..++.||.++-.++..+-+...+++.|+.|+..+..-++--=-..-|.
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34567788999999999999999999999999999999999998888888888888888888877766543333333333
Q ss_pred HHHHHHHHHH
Q 039268 191 MEQRQAMEKN 200 (276)
Q Consensus 191 ~Eq~qaMEkn 200 (276)
.|+......+
T Consensus 95 ~E~veEL~~D 104 (120)
T PF12325_consen 95 SEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHH
Confidence 4433333333
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.25 E-value=0.86 Score=43.74 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=21.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
..|...+-.|+.|....-..+..++.....++...+
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~ 182 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD 182 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666665555544333
No 58
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.20 E-value=1.9 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhc
Q 039268 203 SMAREVEKLRAELTNF 218 (276)
Q Consensus 203 sMarEvEKLRaElana 218 (276)
.+..||..||++|+++
T Consensus 135 ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 135 KIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566677788888764
No 59
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.19 E-value=4.5 Score=43.55 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=99.5
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH----------HHHHhhhhhh
Q 039268 39 LLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVR----------DLVEKGLKLE 108 (276)
Q Consensus 39 ~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R----------~l~ek~~KmE 108 (276)
-++-.|.--..||..|-....-+...|..+|+.|.+.+.+|....+...-+++|.|.=-- .--..+.++.
T Consensus 291 ~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~q 370 (775)
T PF10174_consen 291 RLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQ 370 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666678888888888888889888888888888888888888888888763222 2222233344
Q ss_pred hhhhh----chhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH--HhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 109 ADLRA----TEPLKKEAVQLRAEVQKLNNLR----NELNGKVQTLQKDLAKL--QADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 109 Aelra----~e~lk~El~q~raE~q~L~~~R----qeL~~qvq~l~~eL~r~--~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
.|+-. ++-++..+.....+|..|..-- ..|..+-..+..+..|+ ++|....--+...||....|..+.+.
T Consensus 371 eE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e 450 (775)
T PF10174_consen 371 EEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQE 450 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHH
Confidence 43322 1223333333333333333321 22222222333333333 45666666677777777777777777
Q ss_pred hhhhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 179 AVDYEKKAN-IELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 179 a~EyEKk~~-~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
.|+....-. .+..++...+.+-+-..-.+|+.|..+|.
T Consensus 451 ~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 451 RLEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 776443211 13345555555555555555555555544
No 60
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.11 E-value=0.55 Score=41.47 Aligned_cols=44 Identities=25% Similarity=0.358 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 162 LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
|+.|+.+|+=++-.+-..+.--++-|.++++.. |-.|++|+++|
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw------m~~k~~eAe~m 192 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVERW------MQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence 346666666666666666555566666666654 55577777765
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.06 E-value=0.45 Score=45.48 Aligned_cols=94 Identities=20% Similarity=0.341 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
....+..++..|+++|.....+|..++..+.+|...+..++.++-.-..+++....++.+....+..+ ..+..+..+
T Consensus 40 ~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~---l~~~~~e~~ 116 (314)
T PF04111_consen 40 DSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLE---LIEFQEERD 116 (314)
T ss_dssp --HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 34445555666666666666666666666666655555443332222233333333444444444433 334445555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039268 196 AMEKNLVSMAREVEKLR 212 (276)
Q Consensus 196 aMEknlisMarEvEKLR 212 (276)
.++..+..+...+++||
T Consensus 117 sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 117 SLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666666677765
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.04 E-value=3.5 Score=45.84 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK-DLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK 185 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~-eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 185 (276)
.+..++..+.+++..+...-+.+..+-...-+ ++..+..++.++|.++.+++.++.++.-+-+++.--..
T Consensus 310 ~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ 380 (1201)
T PF12128_consen 310 ELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIES 380 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444444444433 36667777777888888887777777666665544333
No 63
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=94.93 E-value=2.8 Score=42.50 Aligned_cols=176 Identities=22% Similarity=0.325 Sum_probs=105.3
Q ss_pred CChhhhHHHHHHHHHHHhhhccccccch-----hhHHHHHHHHHHHHHHHHH--------------HH----HHHHHhhh
Q 039268 35 PHPALLEEELEIQHAEIQRLLGDNRRLV-----EDRMAMQRELAAAKEELHR--------------MN----LVIGEIRA 91 (276)
Q Consensus 35 p~P~~LEe~l~~Q~~EiqrLl~dNqRLa-----atHvaLrqeLaaaq~Elqr--------------l~----~~~~~i~a 91 (276)
.|-..+||-----.+|+++|--+-.||- +|..|+.-=-.+-+.|+.| |. ....+++-
T Consensus 349 tHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqR 428 (593)
T KOG4807|consen 349 THQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQR 428 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHH
Confidence 5677888744444467888877776653 4444432222222222222 21 12233444
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------
Q 039268 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA----------------- 154 (276)
Q Consensus 92 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a----------------- 154 (276)
|-++-.--.-+|.+..-+=+++.|+-+.-|.|-+-|-|.|.+.-|||...+.. |+.|++.
T Consensus 429 ELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa---EItrLRtlltgdGgGtGsplaqgk 505 (593)
T KOG4807|consen 429 ELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA---EITRLRTLLTGDGGGTGSPLAQGK 505 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HHHHHHHHhccCCCCCCCccccCc
Confidence 44433334446666666777788888888999999999999999999876532 3333221
Q ss_pred -----------hhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 155 -----------DNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 155 -----------d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
.-..|--|+.||..|+-|||-+-.+-.|=...|.+.+-.+-... ..--.+|+.|...|-
T Consensus 506 dayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaK---akadcdIsrLKEqLk 575 (593)
T KOG4807|consen 506 DAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAK---AKADCDISRLKEQLK 575 (593)
T ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHH---HhhhccHHHHHHHHH
Confidence 11235567888888898988888777777777766664432211 112235777766653
No 64
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.89 E-value=2.9 Score=46.24 Aligned_cols=61 Identities=18% Similarity=0.209 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 160 PLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 160 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~ 220 (276)
.+-..+++.-.+|.+++-..+|..++....+-.|+..|++++-++..|+..|++.+.+++.
T Consensus 804 e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~ 864 (1174)
T KOG0933|consen 804 EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEK 864 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3444666777777777777777777777777778888888888888888888888777654
No 65
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.86 E-value=3.9 Score=39.28 Aligned_cols=110 Identities=22% Similarity=0.272 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
-|..++|....++.|+.-+..--..|.+|-|.|+-.+-.+..+++++.. -|+-|+.... .++...|-+.-.++.
T Consensus 21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq---rl~~E~e~~K---ek~e~q~~q~y~q~s 94 (333)
T KOG1853|consen 21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ---RLTTEQERNK---EKQEDQRVQFYQQES 94 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4778999999999999999999999999999999998888888888432 2333332211 133344444445566
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 144 TLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 144 ~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
.|..||.+.++-..|+-.-..||+-.--.|-++..+
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRa 130 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRA 130 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh
Confidence 666666666665555555555555555555554433
No 66
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.84 E-value=2.7 Score=42.50 Aligned_cols=82 Identities=24% Similarity=0.308 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh------chhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA------TEPLKKEAVQLRAEVQKLNNLRNELN 139 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra------~e~lk~El~q~raE~q~L~~~RqeL~ 139 (276)
-.|+.++...++|+.--..-...+-..+|.-|-.|=.++.. -.+.. .+.++.|...++.|++.|...-+.|.
T Consensus 224 ~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~ 301 (511)
T PF09787_consen 224 ELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLR 301 (511)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555443333 11111 46688888888888888777776666
Q ss_pred HHHHHHHHHH
Q 039268 140 GKVQTLQKDL 149 (276)
Q Consensus 140 ~qvq~l~~eL 149 (276)
.+++.+..++
T Consensus 302 ~e~~d~e~~~ 311 (511)
T PF09787_consen 302 AELQDLEAQL 311 (511)
T ss_pred HHHHHHHHHH
Confidence 6666665553
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.74 E-value=1.3 Score=40.33 Aligned_cols=51 Identities=29% Similarity=0.384 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEID 167 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie 167 (276)
+.+|+.++..++..|....+.|...|....+++..++.++.++-..+.+|.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~ 104 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELV 104 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333666666666666666666666677766666666666655555555553
No 68
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.68 E-value=3.1 Score=40.33 Aligned_cols=113 Identities=30% Similarity=0.384 Sum_probs=70.4
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-----------------------HHHHHhhhhhh
Q 039268 52 QRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHV-----------------------RDLVEKGLKLE 108 (276)
Q Consensus 52 qrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~-----------------------R~l~ek~~KmE 108 (276)
|.|+.-|+-|...--.|.++|.++...|..|.+-.. +|.|- +++ .....+...++
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeL-L~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le 163 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELS-MKDEL-LQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLE 163 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHhcCcHhhhcccccCCCccccccccccccccchhHH
Confidence 899999999999999999999999999988877654 22111 000 00011122233
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcchhHHHHHH
Q 039268 109 ADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL-AKLQADNQQIPLLRAEI 166 (276)
Q Consensus 109 Aelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL-~r~~ad~qqipal~aEi 166 (276)
+==+-.-.|..|-.++|.|+.+|...--.+-.+-|.|..|- ..+..-++||..|..||
T Consensus 164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL 222 (306)
T PF04849_consen 164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL 222 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 32223334555777888888888877777777777777773 33333445555555554
No 69
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.67 E-value=0.97 Score=41.25 Aligned_cols=97 Identities=21% Similarity=0.317 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHH
Q 039268 122 VQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNL 201 (276)
Q Consensus 122 ~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 201 (276)
.+.+..+.++...+++|..++..+.+|+..++..+++ +...++..++|+..+-..++.-++...++.-.+..|-..|
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~---l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQ---LERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888888888888888888776544 4456778888888888888888889999999999998888
Q ss_pred HHHHHH------------HHHHHHHhhhccCC
Q 039268 202 VSMARE------------VEKLRAELTNFDGR 221 (276)
Q Consensus 202 isMarE------------vEKLRaElanae~r 221 (276)
-..... |++|++.+.+++--
T Consensus 115 ~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~ 146 (251)
T PF11932_consen 115 EQFVELDLPFLLEERQERLARLRAMLDDADVS 146 (251)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHhhhccCCC
Confidence 875441 78888888877654
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.50 E-value=9.1 Score=42.70 Aligned_cols=68 Identities=25% Similarity=0.357 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
...+++++.++..+++.....|.++..=-.-+..+..+..+-....|.+.+++..+.+++...+..++
T Consensus 773 I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 840 (1201)
T PF12128_consen 773 IQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELN 840 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444433322222222333233333456666666665555555554443
No 71
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.46 E-value=1.2 Score=48.39 Aligned_cols=99 Identities=19% Similarity=0.200 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH--------------HHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 039268 43 ELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEE--------------LHRMNLVIGEIRAEQEVHVRDLVEKGLKLE 108 (276)
Q Consensus 43 ~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~E--------------lqrl~~~~~~i~ae~e~q~R~l~ek~~KmE 108 (276)
++..|..+||--|.+-+|=+...--+++||.--..+ +..+.+-.-.+++|++.||-++--++..+|
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666677766666666555555555544332211 122233336788999999999999999999
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 109 ADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 109 Aelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
.=-+.+|+.|.||+.+.--+..|.+.+-++--|
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q 439 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQ 439 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 988999999999998887777777766555444
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.42 E-value=4 Score=46.13 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=21.6
Q ss_pred HHHHHhhhcchhHHHH-HHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHH
Q 039268 149 LAKLQADNQQIPLLRA-EIDGLHQELMHARAAVDYEKKANIELMEQRQAME 198 (276)
Q Consensus 149 L~r~~ad~qqipal~a-Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 198 (276)
+.++..++..++.... .++.+.++|+.+|..++-=.+...+......+.+
T Consensus 905 ~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~ 955 (1353)
T TIGR02680 905 AEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAE 955 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444433 4555555555555444443333333333333333
No 73
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.39 E-value=1.2 Score=40.85 Aligned_cols=123 Identities=30% Similarity=0.387 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 039268 78 ELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG-------KVQTLQKDLA 150 (276)
Q Consensus 78 Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~-------qvq~l~~eL~ 150 (276)
||--|.....+.++|--...-++ ..||.-|..+++.+......-++|.. ++.....||+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Ei--------------v~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq 76 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEI--------------VSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ 76 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH
Confidence 56666666676666654433333 33555555555555555555454444 4444555566
Q ss_pred HHHhhh----cchhHHHHHHHHHHHHHHHHHhhhhhHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 151 KLQADN----QQIPLLRAEIDGLHQELMHARAAVDYEKKA------NIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 151 r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~------~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
|..++. .++..+.+||..|+.++..+.. .+.- .-+.-.+.+.=...+-++-+|||.||+||..-
T Consensus 77 r~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~----~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~e 150 (202)
T PF06818_consen 77 RKKNEAELLREKLGQLEAELAELREELACAGR----LKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRE 150 (202)
T ss_pred HHhCHHHHhhhhhhhhHHHHHHHHHHHHhhcc----chhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHH
Confidence 655554 3444455555555555555410 0111 11111222222445788899999999999853
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.36 E-value=0.012 Score=61.29 Aligned_cols=162 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 58 NRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ---EVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 58 NqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~---e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
++-++..+..|+..|...++|+.++-....+.+.+- +.++.+|-.++.-|-++.+....||.|+.-+|..+.++...
T Consensus 234 ~~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~kl 313 (713)
T PF05622_consen 234 SQHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKL 313 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344455566677777777888877766666665443 35666666677777777777777888887777765553321
Q ss_pred --------------------HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 135 --------------------RNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 135 --------------------RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
-++|..+...+.+-...+..+++.+.+++..|+.+++++..+.+....+++-...+....
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~ 393 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFEN 393 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333334445566777888888889999999998888888888777776666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElanae 219 (276)
..++..+.++.+|.+.|..|..+-.
T Consensus 394 ~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 394 KQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777788777777666543
No 75
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=94.33 E-value=0.79 Score=48.02 Aligned_cols=115 Identities=19% Similarity=0.229 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAEQ-----EVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELN 139 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~ 139 (276)
-.=|.++|...+++|...-..+.+.+.+. +.+...+++++..+++++.......+++.+.-.+ =.-.=+.|.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~hP~v~~l~ 345 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DHPTYRALL 345 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCchHHHHH
Confidence 34455555555555555555555555544 2344556666666665444433322332211000 000113444
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 140 GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 140 ~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
.+++.+.+++++++..++++|....|+..|..|..-.|.-+++
T Consensus 346 ~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 346 EKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788888888888888888877777777666655443
No 76
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.30 E-value=7.9 Score=42.44 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 134 LRNELNGKVQTLQKDLA----KLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 134 ~RqeL~~qvq~l~~eL~----r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
.-.+|..++..+..+.. +.++..+.+..+++|+..+.-|+..+--.++.--..++..+.|.-..+++=++.+.+
T Consensus 467 ~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 467 ENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 33445555555555533 456677788899999999999988888887777777777788877777776666555
No 77
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=94.26 E-value=0.39 Score=36.21 Aligned_cols=44 Identities=18% Similarity=0.396 Sum_probs=32.0
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
-|++|+||...+..||.++++.-..+..--|+--.+...|..++
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei 48 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEI 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999887776655555555544444443
No 78
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.14 E-value=4.2 Score=36.64 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHhhhccccccch
Q 039268 39 LLEEELEIQHAEIQRLLGDNRRLV 62 (276)
Q Consensus 39 ~LEe~l~~Q~~EiqrLl~dNqRLa 62 (276)
-|...|..-+.+|+.|..+|+-|=
T Consensus 16 ~L~n~l~elq~~l~~l~~ENk~Lk 39 (194)
T PF15619_consen 16 ELQNELAELQRKLQELRKENKTLK 39 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888999999996654
No 79
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.99 E-value=1.3 Score=43.05 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=72.0
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHH----HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE-VHV----RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e-~q~----R~l~ek~~KmEAelra~e~lk~El~q~raE~q 129 (276)
-..|..|..+-..|+|.|..++-|+.-|...+.+.+...+ ... ++=-+-+..||.==.-.+.|.-|++.+--|.+
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEke 157 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKE 157 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998877654 111 11112222333311123334445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQ-ADNQQIPLLRAEIDGLHQEL 173 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~-ad~qqipal~aEie~lrqEl 173 (276)
.|...|.....+++-|.+||.-+- +|...|. +||+|--|-
T Consensus 158 El~~ERD~yk~K~~RLN~ELn~~L~g~~~riv----DIDaLi~EN 198 (319)
T PF09789_consen 158 ELVTERDAYKCKAHRLNHELNYILNGDENRIV----DIDALIMEN 198 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc----cHHHHHHHH
Confidence 666666666677777777765543 3443322 667766554
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.96 E-value=6.7 Score=43.53 Aligned_cols=109 Identities=21% Similarity=0.307 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhhhcccccc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhhh
Q 039268 41 EEELEIQHAEIQRLLGDNRR-------LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEAD 110 (276)
Q Consensus 41 Ee~l~~Q~~EiqrLl~dNqR-------LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEAe 110 (276)
+..|..+..+|..|..+=|+ +-..|-.|++++.....|.+++...+..+.-+-+ ..+..+-+..--+|+|
T Consensus 691 r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 691 RNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555555544333 5577888999999999988888766655544433 5555666666666665
Q ss_pred hh-------------hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 111 LR-------------ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 111 lr-------------a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
|- ..+.|..|+.+++.+...|...|-++......+.-+|
T Consensus 771 l~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l 822 (1200)
T KOG0964|consen 771 LGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANL 822 (1200)
T ss_pred HhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53 3456667777777777777777777766666665553
No 81
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.93 E-value=9.4 Score=43.94 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-++++.++..+-.+-.++.++.+++...
T Consensus 448 ~aklee~e~qL~elE~kL~~lea~leql 475 (1486)
T PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQF 475 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555554433
No 82
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.92 E-value=5.8 Score=44.86 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ-QIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAME 198 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q-qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 198 (276)
++..++.++........++..+++.+..+|..+..-++ .+-.|.++|+.++++|..++..+.-=.+.....-+....-+
T Consensus 883 ~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~ 962 (1353)
T TIGR02680 883 RAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAE 962 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444555555555444444332 34455555555555555555555544444444444444444
Q ss_pred HHHHHHHHHHHHH
Q 039268 199 KNLVSMAREVEKL 211 (276)
Q Consensus 199 knlisMarEvEKL 211 (276)
+++ .-+.+..+.
T Consensus 963 ~~~-~~a~~~~~~ 974 (1353)
T TIGR02680 963 EKR-AEADATLDE 974 (1353)
T ss_pred HHH-HHHHHHHHH
Confidence 444 333333333
No 83
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.84 E-value=3.4 Score=39.83 Aligned_cols=104 Identities=24% Similarity=0.386 Sum_probs=78.9
Q ss_pred HHHHHhhhhhhhhhhhchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEP---LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN----QQIPLLRAEIDGLH 170 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~---lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~----qqipal~aEie~lr 170 (276)
+.|++++..|+.+|..... ...++.-+.+++..|...+.++..+|+.+.++.+..+-++ +.+..++.+.|.|+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888777653 4455556668888888888888888888887766655543 55678889999999
Q ss_pred HHHHHHHhhhhhHHhhhHHHHHHHHHHHHHH
Q 039268 171 QELMHARAAVDYEKKANIELMEQRQAMEKNL 201 (276)
Q Consensus 171 qElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 201 (276)
.++...+..++.....+.....-....++-+
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888877777666666543
No 84
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.84 E-value=4 Score=35.32 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNL 84 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~ 84 (276)
|-..-..|..||...+.+...+-.
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~ 45 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLIL 45 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 334444455555555544444433
No 85
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.82 E-value=8 Score=43.55 Aligned_cols=163 Identities=19% Similarity=0.231 Sum_probs=83.2
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhh----hchhhHHHHHHHH
Q 039268 50 EIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLR----ATEPLKKEAVQLR 125 (276)
Q Consensus 50 EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~r 125 (276)
|+.....++++....+ .-++...+..+....-...+++.+-+...-.+.+++.++|.+|- ..--++.|++-++
T Consensus 430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444 23455555555555555555555555555555555666665321 2222344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHH
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKDLAKLQAD----NQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNL 201 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~eL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 201 (276)
+|+.-|...-..+..++..+..-|.....+ .--|..++.+|+.+.+|+..+...++--+ .-.+.|-+++
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~-------~e~~~~~~~~ 579 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLR-------KEERNLKSQL 579 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHH
Confidence 444444444444445555555555543332 22345555666666666655554433222 2234444555
Q ss_pred HHHHHHHHHHHHHhhhccCCC
Q 039268 202 VSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 202 isMarEvEKLRaElanae~r~ 222 (276)
-..-.+|+-++.-+....+|.
T Consensus 580 ~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 580 NKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 566666777777766666664
No 86
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.80 E-value=10 Score=42.19 Aligned_cols=53 Identities=28% Similarity=0.466 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEV-QKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQ 171 (276)
Q Consensus 116 ~lk~El~q~raE~-q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrq 171 (276)
.++..+..++.+. +.|...+-+...+...|.+|+.+++. ++..|+.|++.++.
T Consensus 376 ~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 376 RLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344444444444 55555555555555566665555554 44444444444433
No 87
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.67 E-value=9.5 Score=43.00 Aligned_cols=96 Identities=19% Similarity=0.265 Sum_probs=51.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL----AKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL----~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.++++.|....+.++-.+...-++..++++....|| .+...-+.++..|+.-|+.++..+..-++.+.--|+.-..
T Consensus 474 t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~ 553 (1293)
T KOG0996|consen 474 TEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPS 553 (1293)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555555555555555555555555555555552 2333444555555555555555555555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039268 190 LMEQRQAMEKNLVSMAREVE 209 (276)
Q Consensus 190 ~~Eq~qaMEknlisMarEvE 209 (276)
.-...+.-+|||-.+..|..
T Consensus 554 ~k~e~~~~~k~l~~~~~e~~ 573 (1293)
T KOG0996|consen 554 LKQELKEKEKELPKLRKEER 573 (1293)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 44445555666666666655
No 88
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.64 E-value=11 Score=42.10 Aligned_cols=87 Identities=22% Similarity=0.373 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHhhhhhhhhhh----hchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIR---AEQEVHVRDLVEKGLKLEADLR----ATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~---ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
.++.+.-.++.+......+..++ +|.|.++-++.+-.--+..|+. ..+.++.|..++..++..-...-+++..
T Consensus 293 ~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~ 372 (1074)
T KOG0250|consen 293 KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKK 372 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555 5556555555554443333332 2244444444444444443334444444
Q ss_pred HHHHHHHHHHHHHh
Q 039268 141 KVQTLQKDLAKLQA 154 (276)
Q Consensus 141 qvq~l~~eL~r~~a 154 (276)
.+..+.+.+..++.
T Consensus 373 ~~d~l~k~I~~~~~ 386 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEK 386 (1074)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.50 E-value=1.4 Score=40.06 Aligned_cols=27 Identities=4% Similarity=0.185 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAE 92 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae 92 (276)
..++..|...++||..+.....++..+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555566666666655555544444
No 90
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.42 E-value=6.8 Score=40.92 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 144 TLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 144 ~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
.+.+.+..+++.+.++|....|+..|..|..-.|..
T Consensus 356 ~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~ 391 (754)
T TIGR01005 356 QLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQL 391 (754)
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555554444444444444
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.37 E-value=5.2 Score=36.03 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 039268 196 AMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 196 aMEknlisMarEvEKLRaElana 218 (276)
.+|+.|..|...+|+--|+|...
T Consensus 147 lLEkKl~~l~~~lE~keaqL~ev 169 (201)
T PF13851_consen 147 LLEKKLQALSEQLEKKEAQLNEV 169 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999999999998888654
No 92
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.36 E-value=1.1 Score=34.35 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
.+.+.|...|.....+++....+. -.|++|++.|++|+.+.|+
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~----------~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEEN----------NKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 444445555555555555554443 4456889999999988774
No 93
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.34 E-value=3.4 Score=37.21 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 128 VQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 128 ~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
++.+.....++..++..+...+.+.+ ++|-..+..++.+++.+...|..+.
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~---~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLR---KRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444433333 2234445566666666666666554
No 94
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=93.30 E-value=3 Score=33.35 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=39.5
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 158 QIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEK 210 (276)
Q Consensus 158 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEK 210 (276)
..=++..-.|+|..|+..++.-+. .+.+..++++.+|+++++--.+.||
T Consensus 46 kyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 46 KYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344556678999999999988753 4678889999999999999888876
No 95
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=93.27 E-value=10 Score=38.36 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMN 83 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~ 83 (276)
++--++|-||..++++.....
T Consensus 81 ~qlr~~rtel~~a~~~k~~~e 101 (499)
T COG4372 81 PQLRALRTELGTAQGEKRAAE 101 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666665554443
No 96
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=93.27 E-value=4.1 Score=37.04 Aligned_cols=96 Identities=17% Similarity=0.166 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh----HHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN----IELMEQR 194 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~----~e~~Eq~ 194 (276)
.||.++-.++++|..--|+|....-.+..|+.-+.+-+ .+|.|..+|..|+.|.---|--++.-|.+. .+-.+|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 58899999999988888888888888888877776655 688899999999998887777777777665 5677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 039268 195 QAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaEl 215 (276)
.-|=...++|-|....+=-||
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888876655554
No 97
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.17 E-value=6.7 Score=35.83 Aligned_cols=156 Identities=21% Similarity=0.281 Sum_probs=68.1
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHH
Q 039268 45 EIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQL 124 (276)
Q Consensus 45 ~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ 124 (276)
..-++.|..+--.|.+|+...-.|+..+..+||=++.-. .|.-|.| +|=.-+.. +..+-.++
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK----~l~eEle----dLk~~~~~----------lEE~~~~L 86 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAK----ALEEELE----DLKTLAKS----------LEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----HHHHHHHH----------HHHHHHHH
Confidence 334455555566667777777777777766654333322 1221211 00011111 12233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH----HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHH
Q 039268 125 RAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPL----LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKN 200 (276)
Q Consensus 125 raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipa----l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn 200 (276)
.+....|...-|.|+++++.+..|..++.++...+-. |-.+..+|+.-+...-+-|--=...-.+..-|.....+-
T Consensus 87 ~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ 166 (193)
T PF14662_consen 87 LAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKT 166 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4444444444444555555555554444443322211 112223333322111111111111123444555556666
Q ss_pred HHHHHHHHHHHHHHhhhc
Q 039268 201 LVSMAREVEKLRAELTNF 218 (276)
Q Consensus 201 lisMarEvEKLRaElana 218 (276)
+.-...=++-||+|+...
T Consensus 167 ieEy~~~teeLR~e~s~L 184 (193)
T PF14662_consen 167 IEEYRSITEELRLEKSRL 184 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666677777777654
No 98
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=4 Score=44.34 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD----NQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL 190 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~ 190 (276)
.-+++-+.|++-|+..|+---|+|+.+++...-++...+.+ .+|+.-++.||+-|+++|+-.-...-+----++++
T Consensus 433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34677788899999999999999999999887776665554 35667777888888888877666555444444444
Q ss_pred HHHHHHH
Q 039268 191 MEQRQAM 197 (276)
Q Consensus 191 ~Eq~qaM 197 (276)
-+|++.|
T Consensus 513 ~~qlkq~ 519 (1118)
T KOG1029|consen 513 NHQLKQK 519 (1118)
T ss_pred HHHHHHh
Confidence 4444444
No 99
>PF13514 AAA_27: AAA domain
Probab=93.15 E-value=16 Score=40.24 Aligned_cols=49 Identities=16% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 141 KVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 141 qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.+..+...|...+...+++-.+..+++.+++++..+...++.-.+...+
T Consensus 785 ~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 833 (1111)
T PF13514_consen 785 ALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAE 833 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666666666666666666666665555444443333
No 100
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.08 E-value=5.1 Score=34.29 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRA---EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~a---e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
+||-|...+..-...+-+.+..+.. ..|.+|.+|-.|+..+|.+|-..+.==.++...-.+..+....=.-|+-+|+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 4555555555555555544444433 4568888888888888887665533333444444444444444446888899
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 144 TLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 144 ~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
.|-.||.++...+.....--.+++.-=.++-|-..+++.+....-.-++.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999888888887777766777766667777777776665554444443
No 101
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.07 E-value=10 Score=39.64 Aligned_cols=32 Identities=13% Similarity=0.290 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHhhhccCC
Q 039268 190 LMEQRQAMEKNLVSMARE-------VEKLRAELTNFDGR 221 (276)
Q Consensus 190 ~~Eq~qaMEknlisMarE-------vEKLRaElanae~r 221 (276)
.+..+|.+...+-.+..| ..+|..|+++..+.
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444444444444443 55666777766655
No 102
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.94 E-value=16 Score=39.46 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=85.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNEL 138 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL 138 (276)
.++...+..+...+...+..+++|......+..+...... .......++..+.....+...+..+.-++..|...-.+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888777766666554444 333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHhhhcc-hhHHHHHH-------HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 139 NGKVQTLQKDLAKLQADNQQ-IPLLRAEI-------DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEK 210 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~qq-ipal~aEi-------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEK 210 (276)
..........+.+....++. +-.+..++ ..+..+++...+....-.....+..++....++++....+++++
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222222222211 12222222 33445555555565666666667777777777777777777777
Q ss_pred HHHHhhhccCC
Q 039268 211 LRAELTNFDGR 221 (276)
Q Consensus 211 LRaElanae~r 221 (276)
++.++.+.+..
T Consensus 429 ~~~~~~~~~~~ 439 (908)
T COG0419 429 LEEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHHH
Confidence 77766665543
No 103
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.88 E-value=4.3 Score=34.18 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
+..|+..+..+...|...-..+...+.....|++|++..+
T Consensus 85 ~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~ 124 (151)
T PF11559_consen 85 LERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQL 124 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445444544444445555555555555555443
No 104
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.86 E-value=7.4 Score=43.92 Aligned_cols=109 Identities=22% Similarity=0.274 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHHhhhccccccch---hhHHHHHHHHHHH---HHHHHH-HHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLV---EDRMAMQRELAAA---KEELHR-MNLVIGEIRAEQEVHVRDLVEKGLKLEAD 110 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLa---atHvaLrqeLaaa---q~Elqr-l~~~~~~i~ae~e~q~R~l~ek~~KmEAe 110 (276)
.+||+-+.--..++..|...++.++ ..+--|.+.+.-. ..|+++ -.+....=..|.+.++.+.-++..+++++
T Consensus 437 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~ 516 (1317)
T KOG0612|consen 437 QILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL 516 (1317)
T ss_pred hhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 5666666666667777777777776 4555555443333 333332 11222233344555666666666666666
Q ss_pred hhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 111 LRAT----EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 111 lra~----e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
+|.. +.+++...+++-..+++.+.|++|-.....+.
T Consensus 517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~d~~ 556 (1317)
T KOG0612|consen 517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAELDMR 556 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhh
Confidence 6654 33455555666666666777776665554444
No 105
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.68 E-value=7.4 Score=35.07 Aligned_cols=145 Identities=11% Similarity=0.168 Sum_probs=79.3
Q ss_pred HhhhccccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELA-AAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLa-aaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q 129 (276)
+..++....++|..|..|-+.|. ..-..|..+......-+-..+..+..+...-..... ..+-.|..-.++-.++.
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~---~l~KaK~~Y~~~c~~~e 138 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEK---YLEKAREKYEADCSKIN 138 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHH
Confidence 44677788888999988888876 345556555433332222222222222222222222 22333333333333332
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELN----GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMA 205 (276)
Q Consensus 130 ~L~~~RqeL~----~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMa 205 (276)
. ++.... .+++.+...|.++..++ ...+.+....-+++...+.- |+.+- .+.+...|.||..=|.+.
T Consensus 139 ~---~~~~~~~~~~ke~eK~~~k~~k~~~~~---~~~~~~Y~~~v~~~~~~~~~--~~~~~-~~~~~~~Q~lEe~Ri~~l 209 (236)
T cd07651 139 S---YTLQSQLTWGKELEKNNAKLNKAQSSI---NSSRRDYQNAVKALRELNEI--WNREW-KAALDDFQDLEEERIQFL 209 (236)
T ss_pred H---HHHHHcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHH
Confidence 2 222211 23344444444444443 33567777777888888774 66666 688889999998887777
Q ss_pred HH
Q 039268 206 RE 207 (276)
Q Consensus 206 rE 207 (276)
++
T Consensus 210 k~ 211 (236)
T cd07651 210 KS 211 (236)
T ss_pred HH
Confidence 76
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.46 E-value=16 Score=38.34 Aligned_cols=155 Identities=20% Similarity=0.288 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHhhhccccccchhhH----------HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 039268 40 LEEELEIQHAEIQRLLGDNRRLVEDR----------MAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 40 LEe~l~~Q~~EiqrLl~dNqRLaatH----------vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
|++-...+.-+|.+|=..|++|-... -.||...+..+.|++...+. +-.+-.|...|+.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y-----------~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY-----------VSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhhHHHHH
Confidence 44444556667777777776665443 23444445555555554433 4456667777777
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 039268 110 DLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL---QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 110 elra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l---~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~ 186 (276)
..+-|+.|+.....|+++|...+.+|..+|..- ..|+.+...|.+ .|..+|+.+.-|+.+.+.-+-..+..
T Consensus 295 ---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~---~l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 295 ---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERN---KLKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 677799999999999999999999998776432 223333333331 22233344444444433333333222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 187 NIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 187 ~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
. -.+-+..|+.++..+.=+-+|---
T Consensus 369 ~---~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 369 I---EDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 344556667777777776666655
No 107
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=3.4 Score=43.47 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH---HHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL---MEQR 194 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~---~Eq~ 194 (276)
+-|+.+...++.++...=+.|..+++.|..++.+++ +||+.|+.+|.++|.-++.+...+-+. -+..
T Consensus 414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k----------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I 483 (652)
T COG2433 414 RREITVYEKRIKKLEETVERLEEENSELKRELEELK----------REIEKLESELERFRREVRDKVRKDREIRARDRRI 483 (652)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334455555555555555555555555555444433 556666666666655555443333222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElanae 219 (276)
-.++++|..=.++||.|..+|+...
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777776665
No 108
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.27 E-value=7.3 Score=42.49 Aligned_cols=84 Identities=19% Similarity=0.299 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
|-+.---|.+||.+.+.-+|.|..-+.+++...--+--++-.-.-..|-.+-.++.+++.+.-.+.-+++|+-.+|+|..
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44555566678888888888888777777776654444433333333333333444444444444445555555555555
Q ss_pred HHHH
Q 039268 141 KVQT 144 (276)
Q Consensus 141 qvq~ 144 (276)
++..
T Consensus 515 qlkq 518 (1118)
T KOG1029|consen 515 QLKQ 518 (1118)
T ss_pred HHHH
Confidence 4443
No 109
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.25 E-value=19 Score=38.81 Aligned_cols=75 Identities=28% Similarity=0.427 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 140 GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 140 ~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
..+..+...+...+...+.+-.+..++..+..++...++. .+-..+..++.+..+.++..+..++++|..++...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRAL----LEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777778887777777773333 23344556666777777777777777777776654
No 110
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=92.24 E-value=5.4 Score=38.07 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 039268 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQ 171 (276)
Q Consensus 92 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrq 171 (276)
.+--++|..+.-+...|+ ++.+.|.--..+..+|++|..- +--+.++..|.+||.++.+++. ..-++|.++..
T Consensus 121 ~~~d~yR~~LK~IR~~E~---sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR 193 (271)
T PF13805_consen 121 DRLDQYRIHLKSIRNREE---SLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence 455788888999999998 5556676667778888888653 4447788888888888887773 22344777766
Q ss_pred HHHHHHhhhhhHHhhhHHHHHHH
Q 039268 172 ELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 172 Elqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+ .++.+|.+.=++-.|.-|.+
T Consensus 194 ~--~lKEa~~~~f~Al~E~aEK~ 214 (271)
T PF13805_consen 194 Q--KLKEAYSLKFDALIERAEKQ 214 (271)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHH
Confidence 5 56777777777766665543
No 111
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.14 E-value=1.1 Score=47.91 Aligned_cols=58 Identities=26% Similarity=0.466 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
-||-++..||-+|.+.|.-|..++-.||-|+.+++...+.+|.|+++++.|+|=+.-+
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~ 923 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAA 923 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999999999999999999999999999999865433
No 112
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.13 E-value=19 Score=42.32 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=53.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNEL 138 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL 138 (276)
+++-....-|..+|+.++.+++-....+..+.-..+.++....-.+.-+.. -...+..+|.-++.++.+|...-.+|
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~---~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES---ELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777777777777777777777777776666554443333 44456666666666666666666666
Q ss_pred HHHHHHHHHH
Q 039268 139 NGKVQTLQKD 148 (276)
Q Consensus 139 ~~qvq~l~~e 148 (276)
..+++.+...
T Consensus 878 ~k~l~~~~~~ 887 (1822)
T KOG4674|consen 878 EKRLKSAKTQ 887 (1822)
T ss_pred HHHHHHhHHH
Confidence 6665555444
No 113
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.08 E-value=7.3 Score=33.63 Aligned_cols=15 Identities=13% Similarity=0.372 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhh
Q 039268 76 KEELHRMNLVIGEIR 90 (276)
Q Consensus 76 q~Elqrl~~~~~~i~ 90 (276)
+.|+.-....+..+.
T Consensus 80 ~~e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 80 QGELSELQQQLQQLQ 94 (191)
T ss_pred hhhHHhHHHHHHHHH
Confidence 344444444444333
No 114
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.07 E-value=10 Score=39.87 Aligned_cols=123 Identities=23% Similarity=0.343 Sum_probs=61.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch---
Q 039268 83 NLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI--- 159 (276)
Q Consensus 83 ~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqi--- 159 (276)
...+..|++|+|.+.--|-.-++. +++...++..++..|...+...+.+|+.|-..|++++...+..
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~ 72 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP 72 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 345667788888655444433333 4445555666666666666666666666666666665443321
Q ss_pred --h--------HHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 160 --P--------LLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 160 --p--------al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
| .|.+|++.|+.|+..+-.-+..--+-|..+..-.+..|.-|..+=+.++.+..+.
T Consensus 73 ~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 73 EPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3455556666666555544433222222221111333444444444444444443
No 115
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.06 E-value=0.044 Score=57.10 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH
Q 039268 75 AKEELHRMNLVIGEIRAEQEVHVRDL 100 (276)
Q Consensus 75 aq~Elqrl~~~~~~i~ae~e~q~R~l 100 (276)
++.++.........++...|...+.|
T Consensus 126 le~el~~~~e~~~~~k~~le~~~~~L 151 (722)
T PF05557_consen 126 LEEELEEAEEELEQLKRKLEEEKRRL 151 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444444
No 116
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.00 E-value=7.7 Score=42.88 Aligned_cols=99 Identities=15% Similarity=0.270 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH----
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ---- 195 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q---- 195 (276)
||..++.+...|..+|--+.++...|.++|.+++-+.++.-+.+.+.-..=.+++-.=-.+-.+|.---|-.+.+|
T Consensus 256 ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve 335 (1243)
T KOG0971|consen 256 ELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVE 335 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 7777777777888888888888888888888888877766665554433223333222222234433333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 039268 196 AMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 196 aMEknlisMarEvEKLRaElana 218 (276)
+....+..|.-++|=|++|.+|-
T Consensus 336 ~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455778888999999999986
No 117
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.97 E-value=8.8 Score=34.31 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=62.7
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
+|-+-+.+||.|-+-.+.|-+--.-+|..+.....+=+.|+.+++.+|.++.+++.++ ...=...+.|-.....
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL------~~ke~~~~~ee~~~~~ 134 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL------EQKEAEWREEEENFNQ 134 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHh
Confidence 3444555666665555552222222333333333333444555555555555544333 0111345555566666
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhcc
Q 039268 179 AVDYEKKANIELMEQRQAMEKNLVSMA----REVEKLRAELTNFD 219 (276)
Q Consensus 179 a~EyEKk~~~e~~Eq~qaMEknlisMa----rEvEKLRaElanae 219 (276)
-|.-|.+.-..+-.++.+.-.++.-|- +++.++|+|++.+.
T Consensus 135 y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~ 179 (182)
T PF15035_consen 135 YLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFARTS 179 (182)
T ss_pred hhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666777788888888887665 44778888887653
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=91.95 E-value=0.046 Score=56.93 Aligned_cols=103 Identities=24% Similarity=0.396 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH---HHHHhhhhhHHhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNEL------NGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL---MHARAAVDYEKKA 186 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL------~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl---qr~Raa~EyEKk~ 186 (276)
-|+++...+.++++...+.|.|| +.++..+..++.+.+--++-+..++..++.|+... ..-...+|.+-+.
T Consensus 278 ~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~ 357 (713)
T PF05622_consen 278 ELRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKK 357 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555544 23455555666667766766777777776665532 2233334443333
Q ss_pred hHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 187 NIEL-------MEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 187 ~~e~-------~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
.... -.|...++..+..+.+++++|..|+...
T Consensus 358 ~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L 396 (713)
T PF05622_consen 358 ARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQL 396 (713)
T ss_dssp ---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 2345556666666666666655555443
No 119
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=91.90 E-value=6.7 Score=34.61 Aligned_cols=104 Identities=21% Similarity=0.297 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
|+.+|.++..++....+....-+++-+..--.|---..+|.+.+-++.++. =.++..+..++..|..+++.+.+
T Consensus 20 L~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~gg~~f~------i~~~~~~~~~r~~l~~~~~~~e~ 93 (158)
T PF09486_consen 20 LRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMTGGAPFS------IDEYLALRRYRDVLEERVRAAEA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCcc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444322222222233333333666666 23556677788888888888888
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 148 DLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
++.+++..+ -....+|-.+++.|-+.++.|
T Consensus 94 ~~a~l~~~l---~~~~~~ia~~~raIarn~a~i 123 (158)
T PF09486_consen 94 ELAALRQAL---RAAEDEIAATRRAIARNDARI 123 (158)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhhH
Confidence 888777433 333445555555555444443
No 120
>PRK01156 chromosome segregation protein; Provisional
Probab=91.74 E-value=21 Score=38.11 Aligned_cols=22 Identities=9% Similarity=0.152 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhcchhHHHHH
Q 039268 144 TLQKDLAKLQADNQQIPLLRAE 165 (276)
Q Consensus 144 ~l~~eL~r~~ad~qqipal~aE 165 (276)
.+.++|..+..+++.+-....+
T Consensus 309 ~l~~~l~~l~~~l~~~e~~~~~ 330 (895)
T PRK01156 309 NKKQILSNIDAEINKYHAIIKK 330 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444333333333
No 121
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.72 E-value=15 Score=41.71 Aligned_cols=11 Identities=36% Similarity=0.655 Sum_probs=5.1
Q ss_pred HHHHHHHHHhh
Q 039268 43 ELEIQHAEIQR 53 (276)
Q Consensus 43 ~l~~Q~~Eiqr 53 (276)
++..+..|.++
T Consensus 476 ~lk~~~~el~~ 486 (1317)
T KOG0612|consen 476 KLKSEESELQR 486 (1317)
T ss_pred HHHHHHHHHHH
Confidence 34444555553
No 122
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.72 E-value=13 Score=38.81 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=15.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
|...-..|+++|..++.+++.......
T Consensus 199 L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 199 LAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344445566666666666666654433
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.58 E-value=6.6 Score=40.62 Aligned_cols=149 Identities=17% Similarity=0.310 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhc----hhhHHHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAK-EELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRAT----EPLKKEAVQLRAEVQKLNNLRNE 137 (276)
Q Consensus 63 atHvaLrqeLaaaq-~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~Rqe 137 (276)
+.-.++.|||.+.= +=.|.+...|.+++++.|- +-+.+.-++||..-+... -+|+.++....+=+..|..-.|+
T Consensus 249 ~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 249 DNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 33445677776653 4467788888888887762 222233334444422222 23444444444444444455555
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
-.+.+..|..|...... +|-+|++-+|+|+..+..-+-.+|.-++-|+|- -.+.+||-.|.-++++|+.++-.
T Consensus 328 ~~g~l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er----e~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 328 WPGKLEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELMNQER----EKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred cchHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHHHh
Confidence 55555555555444443 345677777777777777666666555555543 34677888888888888887655
Q ss_pred cc
Q 039268 218 FD 219 (276)
Q Consensus 218 ae 219 (276)
.+
T Consensus 401 ~~ 402 (622)
T COG5185 401 RK 402 (622)
T ss_pred HH
Confidence 44
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.51 E-value=7.3 Score=32.49 Aligned_cols=66 Identities=27% Similarity=0.443 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 146 QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN----IELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 146 ~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~----~e~~Eq~qaMEknlisMarEvEKL 211 (276)
.+||.+--.+++.|..|+.++..++.++..+++..+-=+... ...-++.+.+++.+..+-.=++-|
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554444433322222 233444445555544444434333
No 125
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.50 E-value=10 Score=34.16 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=57.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHH-----HHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRA-----EIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~a-----Eie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.....|+..++..+.+....-.++..++.....||.+.+..++.+-.|.. |.+.|.++|..+.+.++-..+...+
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666777777777777777776666555543 5677777777777777766666666
Q ss_pred HHHHHHHHHHHHH
Q 039268 190 LMEQRQAMEKNLV 202 (276)
Q Consensus 190 ~~Eq~qaMEknli 202 (276)
+--|.....+|+.
T Consensus 144 Lek~leL~~k~~~ 156 (194)
T PF15619_consen 144 LEKQLELENKSFR 156 (194)
T ss_pred HHHHHHHHhhHHH
Confidence 5555555555543
No 126
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.43 E-value=14 Score=41.21 Aligned_cols=127 Identities=17% Similarity=0.322 Sum_probs=68.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHH--------------HHHHHHHHhhhhHHHHHHHHHHhhhhhhhhh----hhchhhHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELH--------------RMNLVIGEIRAEQEVHVRDLVEKGLKLEADL----RATEPLKKE 120 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elq--------------rl~~~~~~i~ae~e~q~R~l~ek~~KmEAel----ra~e~lk~E 120 (276)
+++.++.-.++.++.-.+++|- .|-..+.+.++++|-.+-++...+-.....+ +-.+--..|
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e 816 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENE 816 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777776665553 3444555666777777766665554444422 111222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhH
Q 039268 121 AVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANI 188 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~ 188 (276)
.+-+..|+..|....+.+..+.+.+...+..+.+ +++.+++.|++...+...+-+.+..+|+.-.
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~---e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~ 881 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKS---ELGNLEAKVDKVEKDVKKAQAELKDQKAKQR 881 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333 3466777777777777777777777766543
No 127
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.38 E-value=1.9 Score=32.56 Aligned_cols=50 Identities=30% Similarity=0.504 Sum_probs=28.7
Q ss_pred HHHHHH---HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 161 LLRAEI---DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 161 al~aEi---e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
+|.+|| +.+..||.+++++ |...-.++|..|+..-.+..||+.|+-++..
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~-------n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSA-------NLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 5677777777654 3334444555555555555555555555543
No 128
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.35 E-value=11 Score=34.06 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~ 87 (276)
++.+|..++.+...|...+.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 129
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=19 Score=36.76 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhhhHHhhhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 039268 167 DGLHQELMHARAAVDYEKKANIELMEQRQ-------AMEKNLVSMAREVEKLR 212 (276)
Q Consensus 167 e~lrqElqr~Raa~EyEKk~~~e~~Eq~q-------aMEknlisMarEvEKLR 212 (276)
+.|+.||+-++-+++.|.-...++-+|.+ .-+-.+.|+..|.|.|+
T Consensus 437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 67888999999999999888877655554 45666777777887776
No 130
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=91.16 E-value=10 Score=36.16 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch----hHHHHHHHHHHHHHHHHHhh
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI----PLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqi----pal~aEie~lrqElqr~Raa 179 (276)
...+..++.+.+..+..|.+.-..|.++++.-++||.|.+--++.+ |+-..|-|.|..||+..=..
T Consensus 171 i~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 171 IKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999877766 78889999999999988655
No 131
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=91.13 E-value=2.5 Score=39.12 Aligned_cols=94 Identities=23% Similarity=0.332 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhhHHH--------HHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 79 LHRMNLVIGEIRAEQEV--------HVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLA 150 (276)
Q Consensus 79 lqrl~~~~~~i~ae~e~--------q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~ 150 (276)
|+|+...+..+-..++. +.+...++..++|+ ..+.+++|+..++.|+++....-..+..++..+.+
T Consensus 113 I~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~---~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~K--- 186 (216)
T KOG1962|consen 113 IRRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEE---ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKK--- 186 (216)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhh---hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45555555555555542 23333333334444 22334555555555555444333333333333333
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh
Q 039268 151 KLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK 185 (276)
Q Consensus 151 r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 185 (276)
|...+..|.|.|-.|.+++|..|+-..|
T Consensus 187 -------q~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 187 -------QSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred -------HHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 3444457888888888888888775544
No 132
>PRK11519 tyrosine kinase; Provisional
Probab=91.08 E-value=4.4 Score=42.55 Aligned_cols=110 Identities=15% Similarity=0.249 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-----HHHHHHHHHhhhhhhhhhhhchhhHHHHHHH----HHHHHHHHHH
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRAEQ-----EVHVRDLVEKGLKLEADLRATEPLKKEAVQL----RAEVQKLNNL 134 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~----raE~q~L~~~ 134 (276)
+-.=|.++|..++++|...-..+.+.+.+. +.+.+.+++.+..+++++...+...+++.+. |-.+
T Consensus 268 a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v------ 341 (719)
T PRK11519 268 SLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY------ 341 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH------
Confidence 333455555555555555555555444433 2444555666555554433322222222111 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 135 RNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 135 RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+.|..+.+.+.+++..+++....+|....|+..|..|..-.+.-+
T Consensus 342 -~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY 386 (719)
T PRK11519 342 -RTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVY 386 (719)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 234455566666777777777777776666666665555555443
No 133
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.00 E-value=16 Score=36.06 Aligned_cols=33 Identities=6% Similarity=0.111 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ 93 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~ 93 (276)
...+-.-|.+++..++++|......+.+.+.+.
T Consensus 159 ~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 159 SDSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555666677777777766666666655444
No 134
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=91.00 E-value=7 Score=42.18 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHhhhccccc
Q 039268 37 PALLEEELEIQHAEIQRLLGDNR 59 (276)
Q Consensus 37 P~~LEe~l~~Q~~EiqrLl~dNq 59 (276)
.+-||+.|+-+.++...+..-|.
T Consensus 93 ndklE~~Lankda~lrq~eekn~ 115 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNR 115 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhh
Confidence 36788888888888776665553
No 135
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.94 E-value=0.53 Score=40.90 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
+....|++|.++-..|...++....|-+.|-+|..||..||+.|.-.|..
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666777778889988989999999988888766653
No 136
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.87 E-value=21 Score=36.61 Aligned_cols=88 Identities=18% Similarity=0.331 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhcc-----hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 127 EVQKLNNLRNELNGKVQTLQKDLAKLQA-----DNQQ-----IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 127 E~q~L~~~RqeL~~qvq~l~~eL~r~~a-----d~qq-----ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
-++.|...++.|+.+-+.|..++-..++ .+++ +--|+..|+..++.+. ..+..+.+.+..+.+|.+.
T Consensus 100 k~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~ 176 (475)
T PRK10361 100 KIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRN 176 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3445667777788777777776322222 1111 2344555555555443 3344578889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039268 197 MEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 197 MEknlisMarEvEKLRaElan 217 (276)
|-+--..|..|..+|-.=|-.
T Consensus 177 L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 177 LQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 877778999999988776643
No 137
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.68 E-value=9 Score=37.64 Aligned_cols=80 Identities=25% Similarity=0.426 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+++-+|..+++.++..+...-+++++-|..++++|+++. .||+.+++|+. |.+
T Consensus 269 e~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Is----------eeLe~vK~eme-----------------erg 321 (359)
T PF10498_consen 269 EPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEIS----------EELEQVKQEME-----------------ERG 321 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHH-----------------Hhc
Confidence 444445555555555555555555555555555555444 33344444432 112
Q ss_pred HHHH--HHHHHHHHHHHHHHHHhhhccCC
Q 039268 195 QAME--KNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 195 qaME--knlisMarEvEKLRaElanae~r 221 (276)
..|. ..||.+.+=|-||+.||..++-|
T Consensus 322 ~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 322 SSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 2222 23677777788999999888765
No 138
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.53 E-value=17 Score=35.11 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039268 62 VEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ 93 (276)
Q Consensus 62 aatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~ 93 (276)
..+-.-|.++|..++++|......+.+.+.+.
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455566666666666666665555555544
No 139
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=90.50 E-value=32 Score=38.02 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 41 EEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGE 88 (276)
Q Consensus 41 Ee~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~ 88 (276)
+..+..-..+++.+...-..+..+...|.+.+...+..+..+...+..
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEEQA 576 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555543333333333334444444444444444444333
No 140
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=90.45 E-value=5.8 Score=41.43 Aligned_cols=94 Identities=27% Similarity=0.372 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh----HHHHHHHHHHHHHHHHHhhhhhHHh--hhHHHH-HHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP----LLRAEIDGLHQELMHARAAVDYEKK--ANIELM-EQRQA 196 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip----al~aEie~lrqElqr~Raa~EyEKk--~~~e~~-Eq~qa 196 (276)
-..|++.|...-++|..++..+..++....+.++|+- ..+.+...+.+++..-..+++.... .|++.+ +.+++
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443322 2223334444444444444443322 233222 23455
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039268 197 MEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 197 MEknlisMarEvEKLRaElan 217 (276)
=+.||+.++.+-|+.|+.|..
T Consensus 406 s~~rl~~L~~qWe~~R~pL~~ 426 (594)
T PF05667_consen 406 SEQRLVELAQQWEKHRAPLIE 426 (594)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 589999999999998887653
No 141
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=90.42 E-value=29 Score=37.53 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHH------HHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVS------MAREVEK 210 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis------MarEvEK 210 (276)
++..+|+.|.+|+.+--.++=..+.|+.=+|.|+-|+-.+=.+=+-|-|.++|-++|- +.+.|.. +----|.
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~q--ik~~~~~a~~~~~lkek~e~ 723 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQ--IKQKIAEALNSSELKEKFEE 723 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH--HHHHHHHHhccHhHHHHHHH
Confidence 3466777777787777777777888888888888888777777777777888888762 2233322 2222799
Q ss_pred HHHHhhhccCC
Q 039268 211 LRAELTNFDGR 221 (276)
Q Consensus 211 LRaElanae~r 221 (276)
|++||+.+..-
T Consensus 724 l~~e~~~~~~~ 734 (762)
T PLN03229 724 LEAELAAARET 734 (762)
T ss_pred HHHHHHHhhcc
Confidence 99999886544
No 142
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.40 E-value=5.9 Score=38.24 Aligned_cols=109 Identities=18% Similarity=0.323 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHH---HHHHHH----HhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 75 AKEELHRMNLVIGEIRAEQEV---HVRDLV----EKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 75 aq~Elqrl~~~~~~i~ae~e~---q~R~l~----ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
|-+-|+-|-..+..++-|+-. |+-.|- ..-.|.|-+--...+||.|.+-+.-.+..|...||-|+.+++.-..
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 345556666666666655542 222211 1112334433334444444444444444444444444444443333
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 039268 148 DLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~ 186 (276)
-+.= --.|+...+..|+.|.+||.++++.+|--..+
T Consensus 96 qv~~---lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 96 QVNF---LEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3222 22355666777788888888887776644443
No 143
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=90.06 E-value=7.2 Score=31.25 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=25.1
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 180 VDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 180 ~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
+++-++.-..+-.++..+++++..+..++.+|+..+..
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444556666777777777777777777776653
No 144
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.96 E-value=4 Score=31.23 Aligned_cols=62 Identities=19% Similarity=0.225 Sum_probs=44.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAE 127 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE 127 (276)
++|-++..+|+-.|..+...+...-..+..|..|+|.-++.|-+......- ||.|+..++.|
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~-------Lk~E~e~L~~e 62 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNK-------LKEENEALRKE 62 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 467788888999998888888888888888888998766666555544443 44455544444
No 145
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.88 E-value=26 Score=37.48 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK----ANIELMEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk----~~~e~~Eq~qaMEknlisMarEvEKLRa 213 (276)
|+.--..+++||.+++..+ ..|++=|+.++.-+.+.+..++..++ ...=.-.|++.+...|-.++.+|..|--
T Consensus 630 LS~AEr~~~~EL~~~~~~l---~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~ 706 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQL---QDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVK 706 (717)
T ss_pred CCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433455566666665543 33445555555544444443332221 1122346888899999999999999888
Q ss_pred HhhhccC
Q 039268 214 ELTNFDG 220 (276)
Q Consensus 214 Elanae~ 220 (276)
+|-+-.+
T Consensus 707 ~ik~i~~ 713 (717)
T PF10168_consen 707 QIKNIKK 713 (717)
T ss_pred HHHHHHH
Confidence 8776543
No 146
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=89.82 E-value=24 Score=35.68 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
.++-.|..+|..++.++..+...|.
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3333333444444444444433333
No 147
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=89.81 E-value=17 Score=33.85 Aligned_cols=36 Identities=17% Similarity=0.050 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
.+++.+....+...+..+...+.+..++....+|..
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 566666666677777766666788888888888853
No 148
>PRK12704 phosphodiesterase; Provisional
Probab=89.77 E-value=25 Score=36.06 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
|..+.+.+.+....+...-+.|-....+|+...+++......++.-+......+|
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555555555554444433333333333
No 149
>PRK01156 chromosome segregation protein; Provisional
Probab=89.44 E-value=33 Score=36.63 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=11.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
.+..+.++.....++..+.....+|..++
T Consensus 631 le~~~~~l~~~~~~i~~~~~~i~~l~~~i 659 (895)
T PRK01156 631 LNNKYNEIQENKILIEKLRGKIDNYKKQI 659 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 150
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.33 E-value=7.5 Score=37.25 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=58.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.+.|-+-...+-.|..++...-..+.-+...+.+|...+++++.+...++.-++.|..|||+-...+..|-+..+.
T Consensus 24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666677777888888888889999999999999999999999988888776654433
No 151
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.27 E-value=27 Score=35.44 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 039268 159 IPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~ 180 (276)
+|.|+.|.+.++.|++.++..|
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888877
No 152
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=89.19 E-value=0.11 Score=54.06 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 162 LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
+...++.|..|+..+..-++..+.....+-....-+|+-.+-+.+|++-||+-|.+.++=
T Consensus 369 l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e 428 (722)
T PF05557_consen 369 LEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE 428 (722)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344456666666666666666666555555666778888889999999999999987754
No 153
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.14 E-value=24 Score=34.71 Aligned_cols=57 Identities=16% Similarity=0.241 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~ 220 (276)
..++.+.+|+..++..+.--+..+.+..+-+..+.+-|-.+.-|+|+...++..-..
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467778888888888888888888888888888888999999999999999876543
No 154
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=89.07 E-value=10 Score=37.38 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
|..+.+.+.++++.+++.+..+|....++..|..|++-.|+.|+-
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~ 391 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYET 391 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777878888888888888888777777553
No 155
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.03 E-value=38 Score=36.81 Aligned_cols=50 Identities=28% Similarity=0.370 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhch
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATE 115 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e 115 (276)
.+-+||.++-..+.|++- ....+.-+|++-+|+.|+.-.-||-.+.-+..
T Consensus 424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs 473 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKKQLAQS 473 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455677777777776653 22335777888888888887777665544333
No 156
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.02 E-value=17 Score=32.75 Aligned_cols=91 Identities=21% Similarity=0.306 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
+.++..+..|.++|..--+.+..++..|.++|.....|.+.+-.+++-+..+.++|..++-..+--.-.+.........+
T Consensus 47 ~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 47 EKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 039268 198 EKNLVSMAREV 208 (276)
Q Consensus 198 EknlisMarEv 208 (276)
...+.++..||
T Consensus 127 ~~kf~~~i~ev 137 (201)
T PF13851_consen 127 YRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=88.92 E-value=5.7 Score=35.08 Aligned_cols=101 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhh----h
Q 039268 37 PALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADL----R 112 (276)
Q Consensus 37 P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAel----r 112 (276)
..-+++++.....|+..+.-.+-.|+..=+.+-.+|...+.++......|..++++... |-.++..++.+| +
T Consensus 69 ~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~----L~~~~~~l~~~l~ek~k 144 (194)
T PF08614_consen 69 ISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQ----LEEKIKDLEEELKEKNK 144 (194)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 35678888888888888888887777766666677766666666666666655544332 222222222222 2
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
+++.++.|+..++.+.-.|..-.+.|..+
T Consensus 145 ~~e~l~DE~~~L~l~~~~~e~k~~~l~~E 173 (194)
T PF08614_consen 145 ANEILQDELQALQLQLNMLEEKLRKLEEE 173 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555444443333333333
No 158
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.90 E-value=18 Score=33.48 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQE 172 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqE 172 (276)
.||.|++.|+..|.+.-+.+..+-........++..+ +--|+.+||.||.|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee---y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE---YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3666777777776666555555555555555555532 23445666666666
No 159
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.81 E-value=38 Score=36.56 Aligned_cols=147 Identities=24% Similarity=0.311 Sum_probs=97.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
|-.+-..||-+|.....|+..-...+-.---..|.-.|.+.--..+.+..+. .+...+.-++..|..-...-.+|.-
T Consensus 539 Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k---~lenk~~~LrKqvEnk~K~ieeLqq 615 (786)
T PF05483_consen 539 LEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK---ILENKCNNLRKQVENKNKNIEELQQ 615 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4445555677777777777666554444444445555555555555555333 3444555555555555555555655
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 141 KVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 141 qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
+-..+.+. .-++..|+.++---|..|+-|+..+.--|+.+...+..-+|.-.+-|-||. -||+|++.-..
T Consensus 616 eNk~LKKk---~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k~~a~ 685 (786)
T PF05483_consen 616 ENKALKKK---ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAKLTAD 685 (786)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHH
Confidence 55666554 567788888888888888889988888899998888888888888887765 47777776543
No 160
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.80 E-value=11 Score=36.08 Aligned_cols=117 Identities=21% Similarity=0.301 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRA--EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~a--e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
|+.++..+..|..........++. ..+..+..+-+...+++. ..+.+.+||..+..|-..|.....+|..+...+
T Consensus 14 l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~---Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 14 LDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQ---EEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp ----------------------------HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555542 112223333333333333 222233333333333333333333333333333
Q ss_pred HHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 146 QKDLAKLQADN----QQIPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 146 ~~eL~r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
.++-.+...+. .++-.+..|.+.+...++++..-++--+|.|
T Consensus 91 ~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 91 DEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33322221111 1122333555555555666666555555555
No 161
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.77 E-value=24 Score=34.17 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=18.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 60 RLVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 60 RLaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
-|...-..++++|..++..|+....-..
T Consensus 175 fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 202 (444)
T TIGR03017 175 WFVQQIAALREDLARAQSKLSAYQQEKG 202 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445556677788888777777665443
No 162
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.74 E-value=31 Score=35.41 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMH 175 (276)
Q Consensus 159 ipal~aEie~lrqElqr 175 (276)
+-....+++.+.+|+..
T Consensus 113 L~~re~eLee~~~e~~~ 129 (514)
T TIGR03319 113 LSNKEKNLDEKEEELEE 129 (514)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444333
No 163
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=88.66 E-value=9.8 Score=36.20 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=13.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHh
Q 039268 156 NQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 156 ~qqipal~aEie~lrqElqr~Ra 178 (276)
.-++-.++++|+.|++.|...+.
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRN 263 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666655443
No 164
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.59 E-value=32 Score=37.00 Aligned_cols=145 Identities=23% Similarity=0.312 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
.|.+.|...+.||..+.+.+..+++|.|.=.-.. ..|-. ..+.+..+..++|.|++.+-.--+-|-.+--.|-
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~----~~~~~---~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselE 103 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLN----QELRK---ECEDLELERKRLREEIKEYKFREARLLQDYSELE 103 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3445555555555555555555555555211000 01111 1233444556666666665554444444444444
Q ss_pred HHHHHHHhhhcchhHH---HHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH----HHHHHHHHHHHHHH---HHHHHhh
Q 039268 147 KDLAKLQADNQQIPLL---RAEIDGLHQELMHARAAVDYEKKANIELMEQRQ----AMEKNLVSMAREVE---KLRAELT 216 (276)
Q Consensus 147 ~eL~r~~ad~qqipal---~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q----aMEknlisMarEvE---KLRaEla 216 (276)
.|=--++ +||..| ..|.|+|++||.|+--.+++-+.---|...-.. -||-=|-++..|=| .||-||.
T Consensus 104 eENislQ---Kqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~ 180 (717)
T PF09730_consen 104 EENISLQ---KQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELD 180 (717)
T ss_pred HHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4411111 223333 357888888888888877776655444433222 26667778887755 4888887
Q ss_pred hccCC
Q 039268 217 NFDGR 221 (276)
Q Consensus 217 nae~r 221 (276)
.-=+.
T Consensus 181 ~~~~~ 185 (717)
T PF09730_consen 181 QHLNI 185 (717)
T ss_pred HhcCc
Confidence 64443
No 165
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=88.56 E-value=9.2 Score=29.16 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQ--KDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~--~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
..++.++...+..|...+.++...+.... -.+..+..-...+..|...|+.+.+++..++..++.-.+...+..-..+
T Consensus 11 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k 90 (123)
T PF02050_consen 11 QQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERK 90 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544444333 0011222222334445555555555555555555554444444444444
Q ss_pred HHH
Q 039268 196 AME 198 (276)
Q Consensus 196 aME 198 (276)
+||
T Consensus 91 ~~e 93 (123)
T PF02050_consen 91 KLE 93 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 166
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=88.47 E-value=0.64 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 186 ANIELMEQRQAMEKNLVSMAREVE 209 (276)
Q Consensus 186 ~~~e~~Eq~qaMEknlisMarEvE 209 (276)
.+....-|+------|+.|.|+|-
T Consensus 1114 knPaiIsqLdpvnarllnmiRdIs 1137 (1282)
T KOG0921|consen 1114 KNPAIISQLDPVNARLLNMIRDIS 1137 (1282)
T ss_pred cChhHhhccCchhHHHHHHHHHhc
Confidence 345555555555555777777754
No 167
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.46 E-value=15 Score=38.38 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039268 132 NNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 132 ~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
...|.++..++|.|.+||.=...
T Consensus 196 tllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 196 TLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 34556666666666666555443
No 168
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=88.41 E-value=40 Score=36.37 Aligned_cols=115 Identities=22% Similarity=0.349 Sum_probs=66.6
Q ss_pred hhhHHHH------HHHHHHHhhhccccccchhhH---HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhh
Q 039268 38 ALLEEEL------EIQHAEIQRLLGDNRRLVEDR---MAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLE 108 (276)
Q Consensus 38 ~~LEe~l------~~Q~~EiqrLl~dNqRLaatH---vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmE 108 (276)
+-||+.. +.+-.|+...|..|+.|...- ..+..+|.++.+||-.+..+...--.|-+.++-..+..-...-
T Consensus 391 ~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ys 470 (786)
T PF05483_consen 391 SELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYS 470 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHH
Confidence 3455554 456667788888898777543 4556788888888888877666555566666666655444333
Q ss_pred hhhhhchhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 109 ADLRATEPLKKEAVQLR-------AEVQKLNNLRNELNGKVQTLQKDLAKLQAD 155 (276)
Q Consensus 109 Aelra~e~lk~El~q~r-------aE~q~L~~~RqeL~~qvq~l~~eL~r~~ad 155 (276)
- .++.||.||.+-. +-+.+|......|.-+...+.-||.+.+.|
T Consensus 471 k---QVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 471 K---QVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 2 4455666666532 222333333334444444444445444444
No 169
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=88.06 E-value=9.5 Score=31.71 Aligned_cols=43 Identities=23% Similarity=0.355 Sum_probs=33.2
Q ss_pred HhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 177 RAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 177 Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
-.|+++-++.-..+-++.+.+++++.....+++++...+....
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777888888888888888888888888776543
No 170
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.04 E-value=27 Score=33.94 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hccCCC
Q 039268 193 QRQAMEKNLVSMAREVEKLRAELT-NFDGRP 222 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaEla-nae~r~ 222 (276)
+....+.++.....++.+++.++. +..-++
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~A 258 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNLNTRIVS 258 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEc
Confidence 344555667777778888888886 354443
No 171
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.93 E-value=15 Score=31.18 Aligned_cols=97 Identities=26% Similarity=0.393 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhcc---h-hHHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQT---LQKDLAKLQADNQQ---I-PLLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~---l~~eL~r~~ad~qq---i-pal~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.-..+++++.|+.+....||.|..|++. ...||..+..|+.- | |.| ++||+--+|+.++ | +.|
T Consensus 10 ~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~--k--Rle 79 (120)
T KOG3478|consen 10 EANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG--K--RLE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH--H--HHH
Confidence 4457788888999999999999998874 45677777777521 1 222 5788888888753 2 222
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 039268 190 L-MEQRQAMEKNLVSMAREVEKLRAELTNFDGRPW 223 (276)
Q Consensus 190 ~-~Eq~qaMEknlisMarEvEKLRaElanae~r~~ 223 (276)
. .-..+-.|+++-.+-+|.+|.|..+++..+-+.
T Consensus 80 fI~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~q 114 (120)
T KOG3478|consen 80 FISKEIKRLENQIRDSQEEFEKQREAVIKLQQAAQ 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 234677889999999999999999998876543
No 172
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=87.91 E-value=2.6 Score=29.60 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
|-...||+ ++.+.+||++++-+. ||+++|||.+.
T Consensus 5 le~~KqEI---L~EvrkEl~K~K~EI---------IeA~~~eL~r~ 38 (40)
T PF08776_consen 5 LERLKQEI---LEEVRKELQKVKEEI---------IEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHhcc
Confidence 33444444 344567777777555 58888888764
No 173
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.79 E-value=37 Score=35.24 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhhhhhh
Q 039268 82 MNLVIGEIRAEQEVHVRDLVEKGLKLEADL 111 (276)
Q Consensus 82 l~~~~~~i~ae~e~q~R~l~ek~~KmEAel 111 (276)
+...+..+....-.++-.+.++..++|.+|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el 407 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEEL 407 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333334333333344555555555555544
No 174
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=87.75 E-value=15 Score=38.43 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=73.0
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~R 177 (276)
+...+|+--||.|+. .++.+.+-++.-|..|...|.||+-+|-.|+.-.+-++ +-+-.-+-|+-. -+-++=
T Consensus 593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgak---KAVhdaK~ElA~---~Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAK---KAVHDAKVELAA---AYSKLL 663 (790)
T ss_pred hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHH---HHHHHH
Confidence 456788888998665 47788899999999999999999999998886533222 112222223211 122222
Q ss_pred hhhhh---HHhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 178 AAVDY---EKKANIELMEQ----------RQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 178 aa~Ey---EKk~~~e~~Eq----------~qaMEknlisMarEvEKLRaElanae~r 221 (276)
+-|+. -||-+.-+.-| .+.|-||-|..+-|-..|.|||-.++.+
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ 720 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEAR 720 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhh
Confidence 22221 13333333333 3456677788887888899999888766
No 175
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=87.69 E-value=52 Score=36.84 Aligned_cols=170 Identities=15% Similarity=0.219 Sum_probs=102.2
Q ss_pred HHHHHHHhhhccccccchh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHhhhhhhhhhh
Q 039268 45 EIQHAEIQRLLGDNRRLVE-------DRMAMQRELAAAKEELHRMNLVIGEIRAEQEV-----HVRDLVEKGLKLEADLR 112 (276)
Q Consensus 45 ~~Q~~EiqrLl~dNqRLaa-------tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~-----q~R~l~ek~~KmEAelr 112 (276)
-.+|.|+..|-.|-++|-. +-.-|++++.....++.++..-- ..+..-|+ ...+.-+.-.+..+...
T Consensus 177 l~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~-~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~ 255 (1072)
T KOG0979|consen 177 LQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERE-RKKSKIELLEKKKKWVEYKKHDREYNAYKQ 255 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccccchHhhhHHHHHHHH
Confidence 3455555555555555442 33445555555555554443211 11111110 11122234456677777
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN----QQIPLLRAEIDGLHQELMHARAAVDYEKKANI 188 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~~~ 188 (276)
+.+-+|.++..+--+++.+...+.+|-.++.....+....+.++ ..+-.+-..++.+.+++...-.+.|+-|+.--
T Consensus 256 ~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~ 335 (1072)
T KOG0979|consen 256 AKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAE 335 (1072)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889988888888888888888777766666655544433 33444455667788888888777776665432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 189 ELMEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 189 e~~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
. -.+++..-..++..+++||.+++...
T Consensus 336 ~-------rq~~i~~~~k~i~~~q~el~~~~~~e 362 (1072)
T KOG0979|consen 336 K-------RQKRIEKAKKMILDAQAELQETEDPE 362 (1072)
T ss_pred H-------HHHHHHHHHHHHHHHHhhhhhcCCcc
Confidence 2 24567777778888888888887653
No 176
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.63 E-value=18 Score=36.86 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 69 QRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 69 rqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
.|.|+.+.++|+.-...-..+.+++. +..+.+..+..+.|.+|+ -|+.|.-|+..|.=...+.-.-|+.++..+
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~ 88 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLIA 88 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333332 334556677777777554 367777777777666666666666666655
Q ss_pred HHHHHHHH
Q 039268 146 QKDLAKLQ 153 (276)
Q Consensus 146 ~~eL~r~~ 153 (276)
..+-.|+.
T Consensus 89 en~~~r~~ 96 (459)
T KOG0288|consen 89 ENLRIRSL 96 (459)
T ss_pred HHHHHHHH
Confidence 55533333
No 177
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=87.55 E-value=16 Score=36.02 Aligned_cols=28 Identities=36% Similarity=0.684 Sum_probs=25.2
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 154 ADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 154 ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
-|+-|||.|++++++||+||.+-+.+|-
T Consensus 248 ~~nPqi~~LkarieSlrkql~qe~q~is 275 (372)
T COG3524 248 PENPQIPGLKARIESLRKQLLQEKQAIS 275 (372)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999888774
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.33 E-value=32 Score=34.00 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=15.1
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 57 DNRRLVEDRMAMQRELAAAKEELHRMNLVI 86 (276)
Q Consensus 57 dNqRLaatHvaLrqeLaaaq~Elqrl~~~~ 86 (276)
|+..+-+..-.|+..+..++.++.+|.+-+
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~ 120 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLK 120 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555554443
No 179
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.31 E-value=3.1 Score=41.08 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ-IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq-ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
+|+++. ++...+|-..++|-+...+.+..+|.|-+-++.. .-.|++++++|.|+++.+-..||--|+.-.|++|-.+
T Consensus 207 irasvi--sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 207 IRASVI--SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 444444 4444555666666666666666666666655543 3457788888889999999999988888888777666
Q ss_pred HHHHHHHHHHHH
Q 039268 196 AMEKNLVSMARE 207 (276)
Q Consensus 196 aMEknlisMarE 207 (276)
..+-+=|.++.+
T Consensus 285 n~~~~~~D~~~~ 296 (365)
T KOG2391|consen 285 NLEALDIDEAIE 296 (365)
T ss_pred cCcCCCchhhhh
Confidence 655555555554
No 180
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.28 E-value=33 Score=38.37 Aligned_cols=162 Identities=26% Similarity=0.326 Sum_probs=94.2
Q ss_pred CCChhhhHHHH-----HHHHHHHhhhccccccc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--HH
Q 039268 34 PPHPALLEEEL-----EIQHAEIQRLLGDNRRL---------VEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEV--HV 97 (276)
Q Consensus 34 pp~P~~LEe~l-----~~Q~~EiqrLl~dNqRL---------aatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~--q~ 97 (276)
.|.+.=||+=| |....=|..=--=||-| .....-||+||.|+..=. +-.-+|.-. +.
T Consensus 368 SPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKn-------Gvyisee~y~~~e 440 (1041)
T KOG0243|consen 368 SPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKN-------GVYISEERYTQEE 440 (1041)
T ss_pred CCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhC-------ceEechHHHHHHH
Confidence 46666788877 33434455444555554 344555566665555322 222222211 22
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~R 177 (276)
.+.=.+..++|.--.-.++++..+.++......+.-.++.|..+++.+...|.... .|+..+..|++++.
T Consensus 441 ~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~----------~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 441 KEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKN----------KELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 22223333333322345557777777777777777777788888888877776666 78899999999998
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 178 AAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 178 aa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
+.+..+ .+.+.++..-|.+++.- ..+||..+..+-
T Consensus 511 ~~l~~~----e~ii~~~~~se~~l~~~---a~~l~~~~~~s~ 545 (1041)
T KOG0243|consen 511 ATLKEE----EEIISQQEKSEEKLVDR---ATKLRRSLEESQ 545 (1041)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 885432 34445555555555555 556666665553
No 181
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.25 E-value=19 Score=38.68 Aligned_cols=56 Identities=27% Similarity=0.445 Sum_probs=40.6
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
-.+..++..|++||+- +|.++.-+++|..+|...-++|....+.+..+-.+++.|+
T Consensus 30 ~~~~~~i~~l~~elk~---~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ 85 (717)
T PF09730_consen 30 AYLQQRILELENELKQ---LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI 85 (717)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888887765 6777777788888888877777777777776666665544
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.19 E-value=9.1 Score=34.83 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039268 162 LRAEIDGLHQELMHARA 178 (276)
Q Consensus 162 l~aEie~lrqElqr~Ra 178 (276)
|+.|.+.|++|+..+++
T Consensus 137 L~~~n~~L~~~l~~~~~ 153 (206)
T PRK10884 137 LKEENQKLKNQLIVAQK 153 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 183
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=86.93 E-value=38 Score=34.41 Aligned_cols=137 Identities=19% Similarity=0.298 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-hhhhhhc--hhhHHHHH-HHHHHHHHHHHHHHHHHHHH-
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKL-EADLRAT--EPLKKEAV-QLRAEVQKLNNLRNELNGKV- 142 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~Km-EAelra~--e~lk~El~-q~raE~q~L~~~RqeL~~qv- 142 (276)
+..-+..++.++..|..-+..++++.+..+...+++..+= -..++.- ..++..+. +-..-...+...+.+|....
T Consensus 249 ~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~ 328 (582)
T PF09731_consen 249 LNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYE 328 (582)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777777777665555444433210 1111110 01111110 00111112233333333332
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHH-----HHHHhhhhhHHhhhHHHHH----HHHHHHHHHHHHHH
Q 039268 143 QTLQKDLAKLQADNQQIPLLRAEIDGLHQEL-----MHARAAVDYEKKANIELME----QRQAMEKNLVSMAR 206 (276)
Q Consensus 143 q~l~~eL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~e~~E----q~qaMEknlisMar 206 (276)
+.|.++|.+..... .-.|+.++.....|+ +.+...++-|+.++...++ +++.+|+-+.+...
T Consensus 329 ~~L~~eL~~~~~~~--~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 329 EELRQELKRQEEAH--EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333444444333 223455555555665 3457888999988876665 45667766655543
No 184
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=21 Score=36.79 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039268 191 MEQRQAMEKNLVSMAREVE 209 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvE 209 (276)
....|.||.+|-+.+.|++
T Consensus 344 ~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 344 IRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 185
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.58 E-value=13 Score=31.91 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
|..|+.+++.++..|......|.+++..+.+.+.-... ..+|..|..|++.|..-|..+|+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555544444444444444444444221111 12334444455555555555444
No 186
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=86.55 E-value=57 Score=36.09 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h---hcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA----D---NQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a----d---~qqipal~aEie~lrqElqr~Raa~ 180 (276)
..++..++.+++.+...++.+.+.+..+.+.|..... + -..+..+.+.+..+.+++..++..+
T Consensus 776 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 845 (1047)
T PRK10246 776 EETLTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQ 845 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777888777777777777766555544111 1 1245556666666666665555444
No 187
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=86.52 E-value=42 Score=34.48 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhHHHHHHHHHHhhh
Q 039268 40 LEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEI-------RAEQEVHVRDLVEKGL 105 (276)
Q Consensus 40 LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i-------~ae~e~q~R~l~ek~~ 105 (276)
+++++.--..+.+.|..|----.+.|.-|+||-.+.++=.+.|-....+. -.|.+-.-|+++-|..
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~e 292 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKE 292 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666777766655555678999999999998666554433321 1234445556554433
No 188
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.48 E-value=43 Score=35.92 Aligned_cols=117 Identities=20% Similarity=0.325 Sum_probs=77.1
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHH
Q 039268 44 LEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQ 123 (276)
Q Consensus 44 l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q 123 (276)
+..=..+|+.|+.+|=....+| +..+|..+- ......|+.+.+..+-..++.+..|-. +....+..|.+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~--v~~~L~~~~------~~lg~~i~~~l~~~~~~~L~~i~~l~~---~~~~~~~~L~~ 257 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDH--VSSDLDNIG------SLLGGDIQDQLGSNVYPALDSILDLAQ---AMQETKELLQN 257 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH--HHHHHHhcc------chhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3444456666666665555554 223333333 234567778888888888888888777 44556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------hcchhHHHHHHHHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD----------------------NQQIPLLRAEIDGLHQ 171 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad----------------------~qqipal~aEie~lrq 171 (276)
+.....+|...-++|..-+..+.++|.....+ ..|+|.+...++++..
T Consensus 258 v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~ 327 (806)
T PF05478_consen 258 VNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEE 327 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHH
Confidence 77777777777777777777777666555544 4579999988887774
No 189
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=86.43 E-value=27 Score=32.31 Aligned_cols=29 Identities=14% Similarity=0.014 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 194 RQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 194 ~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
....+.++-+.-..++..+..+.++.-++
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~A 209 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALLELTYVKA 209 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEEC
Confidence 33444555556666666677777666554
No 190
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=86.43 E-value=9.9 Score=40.17 Aligned_cols=106 Identities=18% Similarity=0.310 Sum_probs=48.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
..+.++.|...+..++..|-..-.+|-+++..+..++..-.--...+-++..+|+.|+.+|+.-...+|.-++. ...+.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~-l~~l~ 508 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK-LAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 33334444444444444444444444444444444433222223345555666666666666666666544433 34455
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH-hhhcc
Q 039268 193 QRQAMEKNLV-SMAREVEKLRAE-LTNFD 219 (276)
Q Consensus 193 q~qaMEknli-sMarEvEKLRaE-lanae 219 (276)
+++.||-.=- .=...|+||+-+ |+.++
T Consensus 509 k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e 537 (652)
T COG2433 509 KMRKLELSGKGTPVKVVEKLTLEAIEEAE 537 (652)
T ss_pred HHHhhhhcCCCcceehhhhhhHHHHHhHH
Confidence 6666652210 011346666633 44443
No 191
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=86.42 E-value=31 Score=38.10 Aligned_cols=98 Identities=26% Similarity=0.341 Sum_probs=53.5
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhhhhhc----hhhHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHhhh
Q 039268 88 EIRAEQEVHVRDLVEKGLKLEADLRAT----EPLKKEAVQLRAEVQKLNN----LRNELNGK---VQTLQKDLAKLQADN 156 (276)
Q Consensus 88 ~i~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~----~RqeL~~q---vq~l~~eL~r~~ad~ 156 (276)
+=.-+.+-|||.|--+...+|.++.+. ..+..++.+...|+..+.+ .-|+|+++ ++....+|.-..
T Consensus 99 ddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~--- 175 (1265)
T KOG0976|consen 99 DDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKN--- 175 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhh---
Confidence 334456677888888888888777654 3344455555555554433 23444443 223333332222
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
.+|..+.-|++..-+.+-.|||.+.+.+++.+
T Consensus 176 -------~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~ 207 (1265)
T KOG0976|consen 176 -------EELNEFNMEFQTKLAEANREKKALEEKLEKFK 207 (1265)
T ss_pred -------hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666554
No 192
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=86.40 E-value=28 Score=36.84 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 188 IELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
..+..|.++.|+-+-+...++|+|+..|.+..
T Consensus 313 e~~~~qI~~le~~l~~~~~~leel~~kL~~~s 344 (629)
T KOG0963|consen 313 EKHKAQISALEKELKAKISELEELKEKLNSRS 344 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45567889999999999999999999888773
No 193
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.32 E-value=8.4 Score=33.10 Aligned_cols=67 Identities=27% Similarity=0.404 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK 185 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 185 (276)
..|+..+..++..|...-.+|..++..+..||..+.+.. ....|...|..|.+|+..+.+-++.-+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777777777777777766666544 3446777777777777777766665444
No 194
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=86.24 E-value=20 Score=34.75 Aligned_cols=102 Identities=17% Similarity=0.298 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hcchhHHHHHHHHHHHHHHHHHhhhh-hHHhh------
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ-AD-NQQIPLLRAEIDGLHQELMHARAAVD-YEKKA------ 186 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~-ad-~qqipal~aEie~lrqElqr~Raa~E-yEKk~------ 186 (276)
.+-+..+|+|-++..++..-.++..+++.|+..=.+.. ++ ...|++.+.+|+.++.++..++..|+ |.+..
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~ 117 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGIT 117 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 35678888999999999999999999888887622222 11 24578888888888888888888774 43321
Q ss_pred ---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 187 ---N-IELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 187 ---~-~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
+ +..+.........+....+|+.+....|.+
T Consensus 118 ~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q 152 (301)
T PF06120_consen 118 ENGYIINHLMSQADATRKLAEATRELAVAQERLEQ 152 (301)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222333344444555555554444444433
No 195
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=86.20 E-value=34 Score=33.19 Aligned_cols=101 Identities=20% Similarity=0.239 Sum_probs=56.6
Q ss_pred HHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 101 VEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 101 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+.||..||. -.|-||+|-+|=+--+..|.++-|--..+ ++.-+.|+-.|+.|.|.+.-.|
T Consensus 17 LqKIqelE~---QldkLkKE~qQrQfQleSlEAaLqKQKqK-----------------~e~ek~e~s~LkREnq~l~e~c 76 (307)
T PF10481_consen 17 LQKIQELEQ---QLDKLKKERQQRQFQLESLEAALQKQKQK-----------------VEEEKNEYSALKRENQSLMESC 76 (307)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------------HHHHhhhhhhhhhhhhhHHHHH
Confidence 456666666 44556666666665555555544433333 3444455555555555555555
Q ss_pred hhHHhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 181 DYEKKANIELME--------------QRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 181 EyEKk~~~e~~E--------------q~qaMEknlisMarEvEKLRaElanae~r 221 (276)
+..-|.+..+.. |+..-.|.+-.+..|+-+++.||+..-.-
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555544433 33334455566666777777777766544
No 196
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.93 E-value=45 Score=34.28 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=62.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------------hhHHH----HHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ----------------IPLLR----AEIDGLHQELM 174 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq----------------ipal~----aEie~lrqElq 174 (276)
..++.++..+...+..+...+.++...++.+.++-..++..++. +|.+- .-+..+..++.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~ 458 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIE 458 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666664333322222 22222 22366678888
Q ss_pred HHHhhhhhHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 175 HARAAVDYEKKANIELME-QRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 175 r~Raa~EyEKk~~~e~~E-q~qaMEknlisMarEvEKLRaElanae 219 (276)
++...++. ...|.+-++ +....+..+-.+..+.+-|......++
T Consensus 459 ~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE 503 (569)
T PRK04778 459 ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTE 503 (569)
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 777877777 666666666666666555555444444
No 197
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=85.92 E-value=23 Score=33.09 Aligned_cols=133 Identities=20% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh--------hhhHH-HHHHHHHHhhhhhhhhhhhchhhHH
Q 039268 49 AEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEI--------RAEQE-VHVRDLVEKGLKLEADLRATEPLKK 119 (276)
Q Consensus 49 ~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i--------~ae~e-~q~R~l~ek~~KmEAelra~e~lk~ 119 (276)
.|++++...-..+-..-+.|.+-...--++|.+..+....+ +++.| +...-|.-|+..|..-||..+.-=-
T Consensus 85 ~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~lKLr~~~~~iL 164 (238)
T PF14735_consen 85 EEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMILKLRVLELEIL 164 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
------.-|.-|...|+.|.+.++.+.+++.++...+..--.+-.|.+.+-+|+.+++..|+
T Consensus 165 ~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie 226 (238)
T PF14735_consen 165 SDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIE 226 (238)
T ss_pred HccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHH
No 198
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=85.85 E-value=32 Score=33.49 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHhhhhhhhhhhhc----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEI--RAEQEVHVRDLVEKGLKLEADLRAT----EPLKKEAVQLRAEVQKLNNLRNELN 139 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i--~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~RqeL~ 139 (276)
-.+.+.|....+++..+...-..+ .++.+..|-+||+..-+++.=.-.. +-|| -|..+|.++......-..|-
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~-tL~~lH~~a~~~~~~l~~le 342 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLK-TLKSLHEEAAEFSQTLSELE 342 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665443333 4456677778888877777633221 3333 45555555555444433333
Q ss_pred HHHHHHHH
Q 039268 140 GKVQTLQK 147 (276)
Q Consensus 140 ~qvq~l~~ 147 (276)
.....+..
T Consensus 343 ~~q~~l~~ 350 (388)
T PF04912_consen 343 SQQSDLQS 350 (388)
T ss_pred HHHHHHHH
Confidence 33333333
No 199
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=85.84 E-value=5.3 Score=37.34 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~ 87 (276)
.|+.+|..+..++......|.
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~ 23 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNA 23 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777
No 200
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=85.83 E-value=3.4 Score=30.70 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRa 213 (276)
-..+.++|+.+.++|.+.|+-|.---.=++-..+=.-.||..|..++..|+.++.
T Consensus 2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567899999999999999999988888888888899999999999999998874
No 201
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=85.74 E-value=6.1 Score=31.36 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=35.0
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMH 175 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr 175 (276)
....++-..-.+-.+..++..+++.|.+.|..++.++..+++. -.....|++++..++.++..
T Consensus 23 ~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~-------~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 23 GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA-------GEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT-------TCCTHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC-------cccHHHHHHHHHHHHHHHHH
Confidence 4445555555555566666677777777777777666665552 13344444444444444433
No 202
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.49 E-value=5.2 Score=42.32 Aligned_cols=52 Identities=21% Similarity=0.311 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
=+.-|+-|+..|.+-||||.+++..+..- |.+++.+|..-++||.++...||
T Consensus 87 I~~sVs~EL~ele~krqel~seI~~~n~k----------iEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 87 ILASVSLELTELEVKRQELNSEIEEINTK----------IEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHhHHHHHHHHhHHH
Confidence 33444555556667777777776665443 44555666666666665554444
No 203
>PF15294 Leu_zip: Leucine zipper
Probab=85.47 E-value=36 Score=32.74 Aligned_cols=126 Identities=21% Similarity=0.287 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhc----------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 94 EVHVRDLVEKGLKLEADLRAT----------------------EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK 151 (276)
Q Consensus 94 e~q~R~l~ek~~KmEAelra~----------------------e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r 151 (276)
+++=|+|++.++++|..-=+. +.+..|...++.|.++|-.--+.|..+.-.+..|-.+
T Consensus 85 elEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 85 ELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888876532222 2366777777777777766555555555555544333
Q ss_pred HHhhhcchhHHH-------------HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 152 LQADNQQIPLLR-------------AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 152 ~~ad~qqipal~-------------aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
+++.++.+-.+. ++|-.|..=+..+. .++||. -.+..++.++++-||++--.||=+++..|..+
T Consensus 165 l~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK--~e~ek~-~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~a 241 (278)
T PF15294_consen 165 LEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALK--SELEKA-LQDKESQQKALEETLQSCKHELLRVQEQLSLA 241 (278)
T ss_pred HHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 333332222211 12222222222222 345554 45566799999999999999999999999888
Q ss_pred cCCC
Q 039268 219 DGRP 222 (276)
Q Consensus 219 e~r~ 222 (276)
++-.
T Consensus 242 ekeL 245 (278)
T PF15294_consen 242 EKEL 245 (278)
T ss_pred hhhH
Confidence 7653
No 204
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.34 E-value=26 Score=40.10 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEA 109 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEA 109 (276)
-+-++......+|++-|-..|.+..+... -+|++|.++.++||-
T Consensus 1460 ~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l 1506 (1758)
T KOG0994|consen 1460 NASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL 1506 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC
Confidence 34455566666677777666666655544 566666666666654
No 205
>PRK00106 hypothetical protein; Provisional
Probab=85.23 E-value=51 Score=34.30 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 139 NGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
..+.+.|.+....+...-+.+-....+|+...+++......++--.......+|
T Consensus 107 ~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 107 TERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444445555555555555555554443333333333
No 206
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.15 E-value=17 Score=39.47 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEE---LHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 65 HvaLrqeLaaaq~E---lqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
.+++.+-+..++.| ++.++.-...--+++|..+|-+-+|.+-+-- ..+-...+|.|.+. +.+|-.+--+|...
T Consensus 72 itt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqe---rLelaE~~l~qs~r-ae~lpeveael~qr 147 (916)
T KOG0249|consen 72 ITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQE---RLELAEPKLQQSLR-AETLPEVEAELAQR 147 (916)
T ss_pred cchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhH---HHHHhhHhhHhHHh-hhhhhhhHHHHHHH
Confidence 45556666666654 3444444444445566666666666655544 33444556666665 55554444444333
Q ss_pred HHHHHHHHHHHHhhhcc----hhHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 039268 142 VQTLQKDLAKLQADNQQ----IPLLRAEIDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 142 vq~l~~eL~r~~ad~qq----ipal~aEie~lrqElqr~Raa~EyEKk~ 186 (276)
+..+ .+.+-+.-. +--|..+++.+-+||+|+|--.+.+...
T Consensus 148 ~~al----~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh 192 (916)
T KOG0249|consen 148 NAAL----TKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEH 192 (916)
T ss_pred HHHH----HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3333 333333322 2345667777778888887766554433
No 207
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=85.12 E-value=23 Score=30.16 Aligned_cols=72 Identities=21% Similarity=0.338 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
Q 039268 78 ELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEV------------QKLNNLRNELNGKVQTL 145 (276)
Q Consensus 78 Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~------------q~L~~~RqeL~~qvq~l 145 (276)
.++.+....+.++.|.+ ..+.-..|||..|.....++.||..+..|. |.|..+|.-.-..+.=+
T Consensus 6 kmee~~~kyq~LQk~l~----k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 6 KMEEEANKYQNLQKELE----KYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFI 81 (120)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHH
Confidence 33344444444444333 345566799999999999999999888774 34444455555555566
Q ss_pred HHHHHHHH
Q 039268 146 QKDLAKLQ 153 (276)
Q Consensus 146 ~~eL~r~~ 153 (276)
++|+.|..
T Consensus 82 ~~Eikr~e 89 (120)
T KOG3478|consen 82 SKEIKRLE 89 (120)
T ss_pred HHHHHHHH
Confidence 66666655
No 208
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=84.99 E-value=17 Score=29.55 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=51.3
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
+.-.+..+|..++.+--.|...-++|..+++.++++...-.. -+.++.+|+.++++++..|.-..--|...
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k~v~ 81 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMKNVF 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777777777778888888888888877444333 57788999999999988887765555443
No 209
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.94 E-value=31 Score=31.63 Aligned_cols=148 Identities=19% Similarity=0.230 Sum_probs=82.3
Q ss_pred CCChhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh
Q 039268 34 PPHPALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA 113 (276)
Q Consensus 34 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra 113 (276)
-|+|.-|+-.++--..+++.+.....- -+..+.....++..|...+..++. ++.....++-++.. .
T Consensus 16 ~~~~~~l~~~~e~~~~~L~~~~~~~~~-------~~~~~~~~e~~l~~L~~d~~~L~~----k~~~~~~~~~~l~~---~ 81 (264)
T PF06008_consen 16 WPAPYKLLSSIEDLTNQLRSYRSKLNP-------QKQQLDPLEKELESLEQDVENLQE----KATKVSRKAQQLNN---N 81 (264)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH---H
Confidence 466666666666666666665544321 223344444444444444432221 22223333334433 4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH-----HHHHhhhhhHHhhhH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL-----MHARAAVDYEKKANI 188 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~ 188 (276)
.+.+......+...|+.|...-++|..++..+..+ -.......++.+.+|++.|=+|+ ..-|..-+.|++.-.
T Consensus 82 t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~--~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~ 159 (264)
T PF06008_consen 82 TERTLQRAQDLEQFIQNLQDNIQELIEQVESLNEN--GDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAE 159 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--cCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 44455555556666666555555555555555551 11224455666777887777777 456777788888888
Q ss_pred HHHHHHHHH
Q 039268 189 ELMEQRQAM 197 (276)
Q Consensus 189 e~~Eq~qaM 197 (276)
+++..++.-
T Consensus 160 ~LL~~v~~~ 168 (264)
T PF06008_consen 160 DLLSRVQKW 168 (264)
T ss_pred HHHHHHHHH
Confidence 888887765
No 210
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=84.93 E-value=6.7 Score=29.32 Aligned_cols=42 Identities=31% Similarity=0.449 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
+|.+-=|.|.++|..|..|+ .+|++++...+.|-.|+-.-|+
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv----------~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDV----------NALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555555553 3444556666777777655444
No 211
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=20 Score=38.01 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhh-cchhHHHHHHHHHHHHHHHHHhhhhh---------
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK---DLAKLQADN-QQIPLLRAEIDGLHQELMHARAAVDY--------- 182 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~---eL~r~~ad~-qqipal~aEie~lrqElqr~Raa~Ey--------- 182 (276)
.+.++++.+++||.+|+..-.+-+.......+ +|-+-+.++ ||...|.+|.|.+|+||....-||-.
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777888887776654444433222211 122333333 56778888888888888776655532
Q ss_pred ------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 183 ------EKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 183 ------EKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
|-..-.|....-.-.=..+.-|-.|+-+||.||+|..
T Consensus 85 ~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 85 RDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222344566677888888888763
No 212
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.77 E-value=52 Score=34.01 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039268 227 GPYGMNFSGVDGSFPAPFGDGYGVHRGL 254 (276)
Q Consensus 227 ~~Yg~~yg~p~~~~~~~Y~d~Yg~~~g~ 254 (276)
.-|+.+|+|..+|.+.+-|.-|.++-+.
T Consensus 443 sl~s~h~~~ssm~~ss~sgs~~~it~~~ 470 (575)
T KOG4403|consen 443 SLYSDHFYNSSMGMSSSSGSISNITSNV 470 (575)
T ss_pred HHhcccccccccccCCCCCCcccccCCh
Confidence 4688888888887776667777766333
No 213
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.38 E-value=23 Score=35.34 Aligned_cols=97 Identities=21% Similarity=0.293 Sum_probs=64.7
Q ss_pred HHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhhhhhhhchhhHHHHHHHH
Q 039268 50 EIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEK----GLKLEADLRATEPLKKEAVQLR 125 (276)
Q Consensus 50 EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek----~~KmEAelra~e~lk~El~q~r 125 (276)
-|++|...|..|--- +.-+.--|.|.+.|.....++.++- .++|+++-| ..+||. .+-.++.|-+++.
T Consensus 76 kirk~~e~~eglr~i----~es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~---li~~~~EEn~~lq 147 (401)
T PF06785_consen 76 KIRKITEKDEGLRKI----RESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEG---LIRHLREENQCLQ 147 (401)
T ss_pred HHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHH---HHHHHHHHHHHHH
Confidence 366666666655433 3455556777777777777776654 355555543 346666 4455777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
.-++.+...+.|...+.|.|.+||+-..+
T Consensus 148 lqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 148 LQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888665443
No 214
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.38 E-value=12 Score=38.40 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 49 AEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 49 ~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
.|+..|..|=.-..+|--.|--++.....+++.|...+.++++|.|
T Consensus 45 ee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 45 EELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred chhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666556666666666666666666666666666666665
No 215
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.32 E-value=23 Score=29.64 Aligned_cols=72 Identities=24% Similarity=0.343 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAME 198 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 198 (276)
.++...-.....|...|.+|.+.++.|.++ ..+-+|.+ ..|+.+|.-+|..+|-||-++.++--+.--++
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q---~~s~~qr~-------~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQ---NASRNQRI-------AELQAKIDEARRNLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566667777788888888887777 33333334 44455555566777778877766655555555
Q ss_pred HH
Q 039268 199 KN 200 (276)
Q Consensus 199 kn 200 (276)
|+
T Consensus 93 ~d 94 (107)
T PF09304_consen 93 KD 94 (107)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 216
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=84.10 E-value=17 Score=28.04 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039268 193 QRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaEl 215 (276)
....+++++-.+..+++++.+.|
T Consensus 77 ~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 77 EIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554
No 217
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=83.88 E-value=11 Score=28.93 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.7
Q ss_pred HhhhhHHHHHHHHHHhhhhhhh
Q 039268 88 EIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 88 ~i~ae~e~q~R~l~ek~~KmEA 109 (276)
+.=+|+|.+|-.|++-+-+|..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk 26 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSK 26 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH
Confidence 3457899999999988888876
No 218
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=83.84 E-value=17 Score=27.68 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEV 95 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~ 95 (276)
.+++|+.+.+++......+..+....+.
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~ 30 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQE 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776666666555553
No 219
>PRK12704 phosphodiesterase; Provisional
Probab=83.79 E-value=38 Score=34.82 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhhhhHHhhhH
Q 039268 169 LHQELMHARAAVDYEKKANI 188 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~ 188 (276)
+++|....-..++.|-|.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a 186 (520)
T PRK12704 167 ARHEAAVLIKEIEEEAKEEA 186 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444433
No 220
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=83.73 E-value=33 Score=32.35 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCC
Q 039268 201 LVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 201 lisMarEvEKLRaElanae~r~ 222 (276)
+-....+++..+..|.++.=++
T Consensus 192 ~~~~~a~l~~a~~~l~~~~I~A 213 (346)
T PRK10476 192 RAAREAALAIAELHLEDTTVRA 213 (346)
T ss_pred HHHHHHHHHHHHHHhhcCEEEC
Confidence 3344455667777777777665
No 221
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.55 E-value=22 Score=30.23 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=43.0
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQ------------KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL 173 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q------------~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl 173 (276)
++|++|+-.+-+..||..+-.|.. +...+.++|..++..+.-.+..++ .|.-.+..+++.|+.+|
T Consensus 31 ~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe---kQe~~l~e~l~eLq~~i 107 (119)
T COG1382 31 QLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE---KQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 677777777777777776655521 234456666666666666655544 34555667777777777
Q ss_pred HHH
Q 039268 174 MHA 176 (276)
Q Consensus 174 qr~ 176 (276)
+.+
T Consensus 108 ~~~ 110 (119)
T COG1382 108 QKA 110 (119)
T ss_pred HHH
Confidence 654
No 222
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=83.52 E-value=14 Score=37.16 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAE 92 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae 92 (276)
..|+++|..++.++.++...+..+++.
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~ 100 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKAL 100 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544444433
No 223
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=83.46 E-value=33 Score=30.77 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 188 IELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEvEKL 211 (276)
.+.+...|.||..-|.+.+++=..
T Consensus 204 p~~~~~~q~le~~ri~~~k~~l~~ 227 (251)
T cd07653 204 PQIFDKLQELDEKRINRTVELLLQ 227 (251)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345577888888888888875443
No 224
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=83.44 E-value=31 Score=30.38 Aligned_cols=101 Identities=15% Similarity=0.231 Sum_probs=49.8
Q ss_pred HHhhhhHHHHHHHHHHhhhhhhhhhhhc-hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcchhHHHH
Q 039268 87 GEIRAEQEVHVRDLVEKGLKLEADLRAT-EPLKKEAVQLRAEVQKLNNL-RNELNGKVQTLQKDLAKLQADNQQIPLLRA 164 (276)
Q Consensus 87 ~~i~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~-RqeL~~qvq~l~~eL~r~~ad~qqipal~a 164 (276)
.++=.++...|.+=++.+.+.-+++... ..++++|..++.+++.+... |..|.++...-.+. +.+++ .
T Consensus 36 ~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~---~ea~L--~----- 105 (155)
T PRK06569 36 EEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKN---LEQDL--K----- 105 (155)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--H-----
Confidence 3344455555555555555554444333 44666667777777776555 66665554433332 33333 2
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHH
Q 039268 165 EIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLV 202 (276)
Q Consensus 165 Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli 202 (276)
..|.+|++..-..++ +-+.+..+++..|--|++
T Consensus 106 --~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~ 138 (155)
T PRK06569 106 --NSINQNIEDINLAAK---QFRTNKSEAIIKLAVNII 138 (155)
T ss_pred --HHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH
Confidence 334444444444444 334444455444444444
No 225
>PRK09343 prefoldin subunit beta; Provisional
Probab=83.37 E-value=16 Score=30.26 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=23.7
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHH
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLN 132 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~ 132 (276)
.+......++++++-.+....||..+-.|..-..
T Consensus 25 ~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk 58 (121)
T PRK09343 25 RLLQQKSQIDLELREINKALEELEKLPDDTPIYK 58 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHH
Confidence 4445555888888888888888888776654433
No 226
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=83.37 E-value=38 Score=31.38 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
|-.++.++..+...|...++++-...+.|..+-.....+..+ |.+++.....++.++..+ +.....-.++.|
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~---Le~e~~e~~~~i~~l~ee----~~~ke~Ea~~lq- 109 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ---LEQELREAEAEIARLEEE----SERKEEEAEELQ- 109 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-
Confidence 344566666666666666666666666665554444433332 445555555555544433 222233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 197 MEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 197 MEknlisMarEvEKLRaElanae~r 221 (276)
+.+..+-...++-..+|.++-..
T Consensus 110 --~el~~ar~~~~~ak~~L~~~~~~ 132 (246)
T PF00769_consen 110 --EELEEAREDEEEAKEELLEVMSA 132 (246)
T ss_dssp --HHHHHHHHHHHHHHHHH----HT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33555555566667777655443
No 227
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.17 E-value=54 Score=34.13 Aligned_cols=88 Identities=19% Similarity=0.305 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
-.+++.+++-+-.+....+.|..++....++......+ +-.+...|..|+.||.-.|.-+| +|+.+|
T Consensus 426 t~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~ee---L~~a~~~i~~LqDEL~TTr~NYE----------~QLs~M 492 (518)
T PF10212_consen 426 TSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEE---LKEANQNISRLQDELETTRRNYE----------EQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHH----------HHHHHH
Confidence 33455555555555555555555555554443332222 22333444445555554444422 578888
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 039268 198 EKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 198 EknlisMarEvEKLRaElana 218 (276)
---|++|.-.+.|-+.||.+-
T Consensus 493 SEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 493 SEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887654
No 228
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.09 E-value=58 Score=33.28 Aligned_cols=25 Identities=0% Similarity=-0.031 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRA 91 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~a 91 (276)
.|++++..+.++++.+...+..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~L~~l~~ 182 (563)
T TIGR00634 158 EKVKAYRELYQAWLKARQQLKDRQQ 182 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555444433
No 229
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=83.01 E-value=85 Score=36.23 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
+.-++.||-.+.+=-+-++.+-+||+-.++|-
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 33444444444444444666667776666653
No 230
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.74 E-value=14 Score=29.12 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh-hhHHhhhHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhhhcc
Q 039268 159 IPLLRAEIDGLHQELMHARAAV-DYEKKANIELMEQRQ-------AMEKNLVSMAR----EVEKLRAELTNFD 219 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~-EyEKk~~~e~~Eq~q-------aMEknlisMar----EvEKLRaElanae 219 (276)
+.+||+|+|.+-+|+...+..- +||.|.+ ..+--++ .||.+-..|.. ||-+||.||.+..
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~-~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKIN-SQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4567777777777777666543 4555533 2222233 34555555543 5889999998764
No 231
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=82.60 E-value=30 Score=29.62 Aligned_cols=83 Identities=22% Similarity=0.338 Sum_probs=43.0
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-------
Q 039268 88 EIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP------- 160 (276)
Q Consensus 88 ~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip------- 160 (276)
.+++|.|. ..++.-.+|+.++. +..+..+...||..|..--+-|-.+|..+...|..+...+....
T Consensus 4 ~lk~E~d~----a~~r~e~~e~~~K~---le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E 76 (143)
T PF12718_consen 4 ALKLEADN----AQDRAEELEAKVKQ---LEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE 76 (143)
T ss_pred HHHHhHHH----HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH
Confidence 34455442 44555555554433 44455566666666666666666666666666555554433332
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039268 161 LLRAEIDGLHQELMHAR 177 (276)
Q Consensus 161 al~aEie~lrqElqr~R 177 (276)
.|..-|.-|-.||..+-
T Consensus 77 ~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 33344444444444443
No 232
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.53 E-value=24 Score=30.14 Aligned_cols=82 Identities=13% Similarity=0.247 Sum_probs=0.0
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
+...+-+-|.|+.. .|.+.|.+|+.+++.+..-|.....=. -.++.|+..++..+.+.+..++.=...-..+=.
T Consensus 44 A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~---~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 44 AVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEIS---KQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q 039268 193 QRQAMEKN 200 (276)
Q Consensus 193 q~qaMEkn 200 (276)
.+-.+|.|
T Consensus 118 ki~~ie~~ 125 (126)
T PF07889_consen 118 KIDEIEEK 125 (126)
T ss_pred HHHHHhcC
No 233
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=82.49 E-value=63 Score=33.22 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhhhHHhhhHH
Q 039268 169 LHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~e 189 (276)
+++|.-..-..++.|-+.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~a~ 181 (514)
T TIGR03319 161 ARHEAAKLIKEIEEEAKEEAD 181 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444333
No 234
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.48 E-value=38 Score=33.77 Aligned_cols=89 Identities=20% Similarity=0.319 Sum_probs=53.7
Q ss_pred HHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhhhhhhchhhHHHH
Q 039268 45 EIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEADLRATEPLKKEA 121 (276)
Q Consensus 45 ~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El 121 (276)
+....|.+.|-..||.|-..-.-.+.=+..++-+.|+|-..+..++.|+- +|+-++..-+..+|. |.
T Consensus 95 ~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekee----------es 164 (401)
T PF06785_consen 95 EERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEE----------ES 164 (401)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHH----------HH
Confidence 44556778888888888777666777777778888888777776666653 444444444444443 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039268 122 VQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 122 ~q~raE~q~L~~~RqeL~~qvq 143 (276)
+++--|+..-.+.-|+|.++-|
T Consensus 165 q~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 165 QTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444445544443
No 235
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=82.45 E-value=58 Score=35.41 Aligned_cols=78 Identities=23% Similarity=0.327 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHH------HHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVS------MAREVEK 210 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis------MarEvEK 210 (276)
.|+.++..|++|+.+--++.-.-|.|+.-+|.|+.+. ++.+. -|.+.++.-+ -+..-|.++. |..+||.
T Consensus 508 ~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~--s~g~~~a~~L--k~ei~kki~e~~~~~~~kek~ea 582 (762)
T PLN03229 508 VLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKAL--SEKKSKAEKL--KAEINKKFKEVMDRPEIKEKMEA 582 (762)
T ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhh--cccchhhhhh--hHHHHHHHHHhcccHHHHHHHHH
Confidence 3777899999999888888888899999999999887 54444 2222223222 3567777777 8888888
Q ss_pred HHHHhhhcc
Q 039268 211 LRAELTNFD 219 (276)
Q Consensus 211 LRaElanae 219 (276)
|+||+.+..
T Consensus 583 ~~aev~~~g 591 (762)
T PLN03229 583 LKAEVASSG 591 (762)
T ss_pred HHHHHHhcC
Confidence 888888843
No 236
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.24 E-value=10 Score=33.77 Aligned_cols=76 Identities=18% Similarity=0.313 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
++..+..+..++.++.....+|..+++....+ +.+...=..+.++++.|+.++..+.+.++--++...+.+++++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~----r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~ 142 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKG----REESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKE 142 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44445555555555555555555444444222 12223334566777777777777777776555555555555443
No 237
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=82.17 E-value=81 Score=34.31 Aligned_cols=143 Identities=23% Similarity=0.296 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHH-------HHHH-------HHHHHHhhhhHHHHHHHHHHhhh--------hhhhhhhhchhhHHH
Q 039268 63 EDRMAMQRELAAAKEE-------LHRM-------NLVIGEIRAEQEVHVRDLVEKGL--------KLEADLRATEPLKKE 120 (276)
Q Consensus 63 atHvaLrqeLaaaq~E-------lqrl-------~~~~~~i~ae~e~q~R~l~ek~~--------KmEAelra~e~lk~E 120 (276)
+.-++||++|.++-+- +-+| -..+..++-|.|..|.+.+-+.- .||+ -...+.++
T Consensus 24 ~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~~le~---~l~e~~~~ 100 (769)
T PF05911_consen 24 AEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKSELEA---KLAELSKR 100 (769)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH
Confidence 3446677777655332 2222 22345667788887777765531 2333 22345567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHH
Q 039268 121 AVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKN 200 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn 200 (276)
|..+.+|.-.|..+-++-..-+..++....++.+|. ..|..-|+++..|.- +..||=-.-.+-+| ....|+|
T Consensus 101 l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~---~~l~~~l~~~eken~----~Lkye~~~~~kele-ir~~E~~ 172 (769)
T PF05911_consen 101 LAESAAENSALSKALQEKEKLIAELSEEKSQAEAEI---EDLMARLESTEKENS----SLKYELHVLSKELE-IRNEERE 172 (769)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-HHHHHHH
Confidence 777777777777777776666666666655555443 444444444444432 22233333333332 3345555
Q ss_pred HHHHHHH------------HHHHHHHhh
Q 039268 201 LVSMARE------------VEKLRAELT 216 (276)
Q Consensus 201 lisMarE------------vEKLRaEla 216 (276)
|..=+.| |-||-||-.
T Consensus 173 ~~~~~ae~a~kqhle~vkkiakLEaEC~ 200 (769)
T PF05911_consen 173 YSRRAAEAASKQHLESVKKIAKLEAECQ 200 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444 667777743
No 238
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=82.07 E-value=20 Score=28.18 Aligned_cols=43 Identities=12% Similarity=0.319 Sum_probs=36.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
.+++|+|...+-.|+..+.+.+.++-.++..-.+|++.++--+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v 48 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999888887777544
No 239
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.98 E-value=64 Score=32.98 Aligned_cols=13 Identities=15% Similarity=0.350 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDL 149 (276)
Q Consensus 137 eL~~qvq~l~~eL 149 (276)
++....+.+.++|
T Consensus 326 ~l~~~~~~l~~eL 338 (563)
T TIGR00634 326 EVLEYAEKIKEEL 338 (563)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 240
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=81.93 E-value=34 Score=29.72 Aligned_cols=85 Identities=18% Similarity=0.224 Sum_probs=49.6
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEV-QKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~-q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+|-.++..+|...+..+.+...+..+. ++|..++++-..-+....++-.+...+. +...+.|.+ +-+..++..|
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~ea~---~~~~~A~~~I 123 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQI--IHEANVRAN---GMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 344455556666666666666666665 4566666666666666666644444333 333334443 3455688888
Q ss_pred hhHHhhhHHHH
Q 039268 181 DYEKKANIELM 191 (276)
Q Consensus 181 EyEKk~~~e~~ 191 (276)
+.|++.-...+
T Consensus 124 ~~ek~~a~~~l 134 (173)
T PRK13453 124 NSQKERAIADI 134 (173)
T ss_pred HHHHHHHHHHH
Confidence 88887765543
No 241
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.90 E-value=66 Score=33.10 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLV 202 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli 202 (276)
..|+.+..+-.+.|+++..+=+.=.++..++..=-.||.
T Consensus 154 ~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt 192 (475)
T PRK10361 154 RQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLT 192 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544444433333344333333443
No 242
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=81.79 E-value=12 Score=29.02 Aligned_cols=58 Identities=36% Similarity=0.549 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
+..++..|.....||..++..+..|+.+.+.+.+++..+++. |||..+.|.+=-.||.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~----------------~eK~L~~E~~LK~QAV 58 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQ----------------YEKQLNTERTLKQQAV 58 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH----------------HHHCHHHHHHHHHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 356888899999999999999999999888877555544443 6666666665444443
No 243
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.48 E-value=34 Score=34.71 Aligned_cols=119 Identities=20% Similarity=0.302 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh-hh-hchhhHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 039268 69 QRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEAD-LR-ATEPLKKEA----VQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 69 rqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAe-lr-a~e~lk~El----~q~raE~q~L~~~RqeL~~qv 142 (276)
.+||...++||-.|.++..+.+++-..-|-.+.+|+.++-.= +- +..+=|+=+ .++-.+.++|.+-=.+|..-|
T Consensus 154 ~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~v 233 (426)
T smart00806 154 RAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDII 233 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888899998898888888888888888888888877431 11 112222222 223356667777777777778
Q ss_pred HHHHHHHHH--HHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 143 QTLQKDLAK--LQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 143 q~l~~eL~r--~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
..|.+|+.. ++.-.+|+-.+..||+...+||+..-.-|.-||-.-
T Consensus 234 E~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~W 280 (426)
T smart00806 234 EALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIW 280 (426)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 888888553 455678999999999999999999999998887654
No 244
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.27 E-value=16 Score=36.84 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
..+....+.-+-.+.+++++|+.+|....
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 144 LTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444555555666666777777765554
No 245
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=81.22 E-value=33 Score=29.20 Aligned_cols=73 Identities=26% Similarity=0.238 Sum_probs=51.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
..+-..|...+.+|.+.|++..+=|.-|...+. ++|+ +.+.....|.++...++.+.+.
T Consensus 19 ~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~------------------~~e~---~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQLAANLHQLELLQEEIE------------------KEEA---ALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344466778889999999988887777777666 5555 4455566677777777777777
Q ss_pred HHHHHHHHHHHHHH
Q 039268 135 RNELNGKVQTLQKD 148 (276)
Q Consensus 135 RqeL~~qvq~l~~e 148 (276)
+.++..++..+.+.
T Consensus 78 ~~~~~~~~~~vL~~ 91 (160)
T PF13094_consen 78 REEEEKKAHPVLQL 91 (160)
T ss_pred HHHHHhccchhhcc
Confidence 77777775444433
No 246
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=81.19 E-value=27 Score=28.22 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
+..|...|+..++.+..++..++.-++.-.+-.-..++|||
T Consensus 70 ~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 70 IRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666555555555555554
No 247
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=81.10 E-value=11 Score=37.41 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=20.7
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 112 RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 112 ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
-..-.+..+..++..+++.|.+.|..++.++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666667777777777777776654
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.05 E-value=46 Score=30.75 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH---HHHHHHHHHhhhhhhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQ---EVHVRDLVEKGLKLEA 109 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~---e~q~R~l~ek~~KmEA 109 (276)
..|.|.|-.++.+|..+...+..+.+.. +.++..+...+.|+|.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556655555555555444432 3444444444445444
No 249
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.84 E-value=83 Score=33.56 Aligned_cols=59 Identities=27% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 149 LAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 149 L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
-+|-..=+++|-.|..|+..+|+||-+.++.-|---+.+.++-+...+.|-.-+.|-.|
T Consensus 99 aakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e 157 (772)
T KOG0999|consen 99 AAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDE 157 (772)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 34455567777777777777777777777766666666666655555555444444333
No 250
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.83 E-value=25 Score=31.68 Aligned_cols=44 Identities=20% Similarity=0.386 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
.|....+-+..+.+...+|+.++++++ .++..++++++.+.+..
T Consensus 142 el~~~~~~~~~~ke~~~~ei~~lks~~---~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 142 ELQRQAAKLKEKKEAKDKEISRLKSEA---EALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 333344445555666666666666554 33445555555554443
No 251
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=80.60 E-value=41 Score=30.81 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 69 QRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATE----PLKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 69 rqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e----~lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
+|-..-+.-||+|..-...+...|+-+...+ ++...|.+||.-.- .+-..-.+++.|++.|...|++..+++..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~--~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESE--ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667778888776666555555443332 45555555554432 22233345666666666666666666666
Q ss_pred HHHHHHHHHh
Q 039268 145 LQKDLAKLQA 154 (276)
Q Consensus 145 l~~eL~r~~a 154 (276)
+.+.+..++.
T Consensus 173 lQ~qv~~Lq~ 182 (192)
T PF11180_consen 173 LQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHH
Confidence 6555444443
No 252
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.54 E-value=1.1e+02 Score=34.57 Aligned_cols=170 Identities=19% Similarity=0.251 Sum_probs=87.3
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 130 (276)
+.+.-..|.-|-.-..-+-+..+..|.||++-......++.-+|...+++-|-.--||.--=--|-...-..-++.|+..
T Consensus 257 lekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~ 336 (1243)
T KOG0971|consen 257 LEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEA 336 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33333344433333334445555666666666666777777788888888777666654110001111112334455666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch-----hHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQI-----PLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMA 205 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqi-----pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMa 205 (276)
|..--.||+.++..|..|.+--=+|.+-. --|...-+.|+.=|.|+|..--.||--...+..-+...-.-+--+-
T Consensus 337 lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~ 416 (1243)
T KOG0971|consen 337 LKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELR 416 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 66666677777777766654443443221 1222233556666666666655555544444332222222233333
Q ss_pred HHHHHHHHHhhhccC
Q 039268 206 REVEKLRAELTNFDG 220 (276)
Q Consensus 206 rEvEKLRaElanae~ 220 (276)
+--|+|..++.++|.
T Consensus 417 r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 417 RQKERLSRELDQAES 431 (1243)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666666654
No 253
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=80.37 E-value=32 Score=33.50 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-----hHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI-----PLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqi-----pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
++|+.--+ .|+.+|..|-.++..--+.+.+..+++++. -+|.+|||..++|-...=.+ +...-|-
T Consensus 160 KDLqRctv---SL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~a-------RqkkAee 229 (302)
T PF07139_consen 160 KDLQRCTV---SLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDA-------RQKKAEE 229 (302)
T ss_pred HHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 37876666 889999999999999999999888888765 47889999999986655332 4445566
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhc
Q 039268 194 RQAMEKNLVSMARE-VEKLRAELTNF 218 (276)
Q Consensus 194 ~qaMEknlisMarE-vEKLRaElana 218 (276)
++.|..--+.|+-+ |--|||||-.+
T Consensus 230 Lkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 230 LKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 77777778888876 88899999865
No 254
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.21 E-value=1.1e+02 Score=34.64 Aligned_cols=155 Identities=21% Similarity=0.251 Sum_probs=92.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------H--------------HHHHHHHHhhhhhhhhhhhchhhHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ-------E--------------VHVRDLVEKGLKLEADLRATEPLKK 119 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~-------e--------------~q~R~l~ek~~KmEAelra~e~lk~ 119 (276)
|.+..--|+.+++.|..+.++...-...|.+|+ + .|.--.+=+.-+.|+ ..+-+..
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~---~i~k~~~ 234 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEA---CIEKAND 234 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHhhhhH
Confidence 556667778888888888877776666666665 1 111112223334455 3445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH-----------------HHHHHHHHHhhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDG-----------------LHQELMHARAAVDY 182 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~-----------------lrqElqr~Raa~Ey 182 (276)
||....+|+.+|...+..-..++....++..+..-+++++.....+.+. ++..|....-.|+-
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~ 314 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIET 314 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHH
Confidence 7777777777777776666666666665555555555555444444333 33344445555555
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 183 EKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 183 EKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
=++.+..+-+..+.++|.++++..=-+-+-.|+.+.
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~ 350 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEER 350 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888877655444444444443
No 255
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=80.07 E-value=31 Score=28.11 Aligned_cols=38 Identities=29% Similarity=0.468 Sum_probs=27.1
Q ss_pred hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 179 AVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 179 a~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
|+++-++.-..+-+++..+++++..+..++..+.+.+.
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666777777778888877777777776554
No 256
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=80.00 E-value=51 Score=30.56 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH----HH
Q 039268 122 VQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ----AM 197 (276)
Q Consensus 122 ~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q----aM 197 (276)
.+...++..+.+....+.++++...+++.|.+.=.++--.-+.++|..+.++..+++.++.-+......+.+.+ .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 172 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASL 172 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666777777776655555555667777776666666655543322221111111 01
Q ss_pred -----HHHHHHHHHHHHHHHHHhhhccCC
Q 039268 198 -----EKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 198 -----EknlisMarEvEKLRaElanae~r 221 (276)
..++-..-.++..+++.+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 201 (327)
T TIGR02971 173 AEEVRETDVDLAQAEVKSALEAVQQAEAL 201 (327)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333345566777777766544
No 257
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=79.69 E-value=90 Score=33.26 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhhhhh
Q 039268 95 VHVRDLVEKGLKLEA 109 (276)
Q Consensus 95 ~q~R~l~ek~~KmEA 109 (276)
-|+..+-.++..|..
T Consensus 196 ~q~~~le~ki~~lq~ 210 (629)
T KOG0963|consen 196 EQLEELEKKISSLQS 210 (629)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555544
No 258
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=79.49 E-value=52 Score=30.38 Aligned_cols=138 Identities=13% Similarity=0.142 Sum_probs=63.9
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHH--HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHH
Q 039268 53 RLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVI-GEIRAEQE--VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 53 rLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~-~~i~ae~e--~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q 129 (276)
.+.....+++..|..|.+.|...-.+|..+.-.- ..-+...+ ....+.+.+.. .-+..++--|..-.++--|+.
T Consensus 64 ~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q---~~~~~l~kaK~~Y~~~cke~e 140 (261)
T cd07674 64 VFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQ---VQSQHLQKSRENYHSKCVEQE 140 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3555667888899888888875555666553211 11111111 11112222222 222233333333333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
+.. + .-...++|.+++.-+++ -..+.....+.+...|..|+ ..-....++.|.||.+=|..-++
T Consensus 141 ~a~---~-----~~~s~k~leK~~~K~~k---a~~~y~~~~~ky~~~~~~~~---~~m~~~~~~~Q~~Ee~Ri~~lk~ 204 (261)
T cd07674 141 RLR---R-----EGVPQKELEKAELKTKK---AAESLRGSVEKYNRARGDFE---QKMLESAQKFQDIEETHLRHMKL 204 (261)
T ss_pred HHH---h-----cCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1 00112334444322211 12234555555555665533 34456678889998887777666
No 259
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=79.47 E-value=1.1 Score=38.24 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCC
Q 039268 227 GPYGMNFSGVDGSFP-APFGDGYGVH 251 (276)
Q Consensus 227 ~~Yg~~yg~p~~~~~-~~Y~d~Yg~~ 251 (276)
..||.+|| .+||+ |+||.+|+.+
T Consensus 75 ~sYgtsYg--~ggyGsnaYG~~~~~n 98 (132)
T PF04626_consen 75 QSYGTSYG--GGGYGSNAYGVQRSVN 98 (132)
T ss_pred cccceeec--CCcccccccCCCcCcc
Confidence 67888888 47888 8899888765
No 260
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.44 E-value=95 Score=34.38 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=58.8
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----------HHHHHhhhcchhHHHHH-------HH
Q 039268 112 RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQ-------TLQKD----------LAKLQADNQQIPLLRAE-------ID 167 (276)
Q Consensus 112 ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq-------~l~~e----------L~r~~ad~qqipal~aE-------ie 167 (276)
.+......|+..++.|.++|.+--..|+.++. .+... +.-+..|-+|+-.+..+ +.
T Consensus 730 e~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~ 809 (970)
T KOG0946|consen 730 EASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQ 809 (970)
T ss_pred HhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHH
Confidence 35566778899999999998876666666551 11111 11112233334333222 34
Q ss_pred HHHHHHHHHHhhhh---hHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 168 GLHQELMHARAAVD---YEKKANIELMEQRQAMEKNLVSMAREVEK 210 (276)
Q Consensus 168 ~lrqElqr~Raa~E---yEKk~~~e~~Eq~qaMEknlisMarEvEK 210 (276)
.+..|+++...++. .+.++.+++++.+..-++|+..=+.-||+
T Consensus 810 ~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 810 ELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQ 855 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHH
Confidence 44444444443332 46678889999998888888777777776
No 261
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.32 E-value=54 Score=30.46 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
++.+|.+.-..+..-...-+|+..+...|.+|=...-.++++| .++|..|-..+..+++.-+--+..-.-++
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI---~~DIn~lE~iIkqa~~er~~~~~~i~r~~----- 87 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQI---NQDINTLENIIKQAESERNKRQEKIQRLY----- 87 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 5555555555555555555555555666666633333333332 34555555555555554332222222222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039268 197 MEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 197 MEknlisMarEvEKLRaE 214 (276)
.-+.-+-.+|.++|.|
T Consensus 88 --eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 88 --EEYKPLKDEINELRKE 103 (230)
T ss_pred --HHHHHHHHHHHHHHHH
Confidence 2456666777777777
No 262
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=79.19 E-value=16 Score=34.11 Aligned_cols=36 Identities=33% Similarity=0.468 Sum_probs=29.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 183 EKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 183 EKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-|.-|.|+=+++....+.+..+-+||++|+++=.+-
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888899999999999999984443
No 263
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=79.07 E-value=9.8 Score=34.86 Aligned_cols=58 Identities=22% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 162 LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
|.+++++++|-+-.++--||.+|.++-+.-|---..++.+.+.-.+++-||.||++..
T Consensus 86 Le~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 86 LESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555666677777777765544444788888888888888888888764
No 264
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=78.99 E-value=49 Score=30.69 Aligned_cols=81 Identities=11% Similarity=0.098 Sum_probs=37.8
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQK-LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~-L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 184 (276)
+++.+|...+..+.|..+...+.++ |..++++-..-+....++-.+...++ +...+.|++.+ +..+|+.++.||
T Consensus 40 ~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~i--l~~A~~ea~~~---~~~a~~~ie~Ek 114 (250)
T PRK14474 40 RIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHL--LNEAREDVATA---RDEWLEQLEREK 114 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4444444444444454444444332 33334444444444444433333322 33334444443 356677777777
Q ss_pred hhhHHHH
Q 039268 185 KANIELM 191 (276)
Q Consensus 185 k~~~e~~ 191 (276)
+.....+
T Consensus 115 ~~a~~~L 121 (250)
T PRK14474 115 QEFFKAL 121 (250)
T ss_pred HHHHHHH
Confidence 6654433
No 265
>PRK11519 tyrosine kinase; Provisional
Probab=78.96 E-value=33 Score=36.13 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 189 ELMEQRQAMEKNLVSMAREVEKLR 212 (276)
Q Consensus 189 e~~Eq~qaMEknlisMarEvEKLR 212 (276)
++.-+.++=++.+..+..-.+.++
T Consensus 374 ~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 374 RLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555555555544
No 266
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=78.86 E-value=36 Score=33.13 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI 166 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi 166 (276)
++|-+|+..|.+|+-.|...||.=...+..+|.--.++. | .||..|||||
T Consensus 203 vaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd~A~~Ms-E-~Ql~ELRadI 252 (302)
T PF07139_consen 203 VALLAEMDKVKAEAMEILDARQKKAEELKRLTDRASQMS-E-EQLAELRADI 252 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-H-HHHHHHHHHH
Confidence 457789999999999999999988877777775533332 1 2344444444
No 267
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=78.85 E-value=13 Score=36.94 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=21.8
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 110 DLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 110 elra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
++-..-.+.++..++..+++.|.+.|.+++.++..
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666667777777777777666654
No 268
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=78.77 E-value=67 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCC
Q 039268 199 KNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 199 knlisMarEvEKLRaElanae~r 221 (276)
..+-....++..+++++++++..
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~ 249 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENK 249 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566666666555443
No 269
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.74 E-value=41 Score=34.51 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH
Q 039268 72 LAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 72 Laaaq~Elqrl~~~~~~i~ae~e 94 (276)
+.+++.||-+|.+.....+||-|
T Consensus 33 ~qa~q~dl~~lrtql~~a~aeme 55 (542)
T KOG0993|consen 33 LQAAQDDLGHLRTQLWEAQAEME 55 (542)
T ss_pred hhhhcchHHHHHHHHHHHHHHHH
Confidence 56777888888888877777765
No 270
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=78.74 E-value=57 Score=30.45 Aligned_cols=83 Identities=7% Similarity=0.023 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 140 GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL-----MEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 140 ~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~-----~Eq~qaMEknlisMarEvEKLRaE 214 (276)
.+++...+++.|.+.=.++--.-+.++|..+.++..+++.++.-+...... .++....+..+-+...++++++..
T Consensus 121 ~~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~ 200 (331)
T PRK03598 121 AAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELN 200 (331)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555554444444455666777777666666655444322211 123344445555555556777777
Q ss_pred hhhccCCC
Q 039268 215 LTNFDGRP 222 (276)
Q Consensus 215 lanae~r~ 222 (276)
+.+..-++
T Consensus 201 l~~~~I~A 208 (331)
T PRK03598 201 LQDTELIA 208 (331)
T ss_pred HhcCEEEC
Confidence 76665554
No 271
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=78.74 E-value=48 Score=29.53 Aligned_cols=86 Identities=21% Similarity=0.370 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH-
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ- 195 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q- 195 (276)
+-+-|--+.-+-++|+..|++|.+-+.-+++|+.-++ .=||..-.||..++..|.-=.+-+-+-+++.-
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vR----------kkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVR----------KKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHH----------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777888999999999999999999965544 55566666666666555433333333333321
Q ss_pred ------HHHHHHHHHHHHHHHHH
Q 039268 196 ------AMEKNLVSMAREVEKLR 212 (276)
Q Consensus 196 ------aMEknlisMarEvEKLR 212 (276)
.+-..|+.+..|-|+||
T Consensus 124 knkeK~~Lv~~L~eLv~eSE~~r 146 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELVSESERLR 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223667777877776
No 272
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=78.69 E-value=51 Score=30.55 Aligned_cols=71 Identities=17% Similarity=0.301 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHHHHh-hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 139 NGKVQTLQKDLAKLQADNQQIPLLRAEI-DGLHQELMHARA-AVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~qqipal~aEi-e~lrqElqr~Ra-a~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
.-+-..+-+|+.|.+-|+...-.--.|| +.++.|-.|+|+ -++|-. +.- ..+++|...++-.+|..++++|
T Consensus 28 a~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AE-----n~r-rs~L~kv~~l~QARidRvK~Hi 100 (228)
T PF06721_consen 28 AYQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAE-----NNR-RSALEKVASLYQARIDRVKAHI 100 (228)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334445556666666665555555555 445666666665 333322 222 3445555555555666666666
No 273
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=78.68 E-value=46 Score=29.31 Aligned_cols=119 Identities=14% Similarity=0.229 Sum_probs=70.7
Q ss_pred CCChhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHhhhhhhhhhh
Q 039268 34 PPHPALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLV-IGEIRAEQEVHVRDLVEKGLKLEADLR 112 (276)
Q Consensus 34 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~-~~~i~ae~e~q~R~l~ek~~KmEAelr 112 (276)
||--.+|++|-..=...+..--..+.-...--...+++|..++.|.+.+... ..++.+|-+. +..++|++|+
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~-------~~~~~ea~L~ 105 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLI-------KKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4566788877655544444443344444555555667777777777777654 5666665554 4456777665
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLH 170 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lr 170 (276)
. .+.+|....-..+. ..|-+.+.++-.|+.++. .++.-.++.++-|+
T Consensus 106 ~--~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 106 N--SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ 152 (155)
T ss_pred H--HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence 4 36666655555444 456666667777777765 34555555555443
No 274
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.64 E-value=52 Score=29.92 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHhhhhhhhhhhhc
Q 039268 67 AMQRELAAAKEELHRMNLVIGEI---RAEQEVHVRDLVEKGLKLEADLRAT 114 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i---~ae~e~q~R~l~ek~~KmEAelra~ 114 (276)
.|+.+|-.+++.+..+...+... ...-|.++..|-.|+.-||.+|...
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34555555555444444332222 2233345555555555555554433
No 275
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=78.62 E-value=15 Score=31.85 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
.++....+++..+...+..|..|+....+.|..++..+.-+..|+++|+.|+.++...-..
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~ 73 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEE 73 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777888999999999999999999998888888899999988888654444
No 276
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=78.39 E-value=40 Score=30.33 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNE---LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 120 El~q~raE~q~L~~~Rqe---L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
++.-+++=+.+|.+.+.+ +......+.+.+....++.+++-.-.++|+.-=-||++..+.+. +..++
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~----------~~ke~ 156 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK----------EKKEA 156 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 344455555556665553 33344444555555555555555555666555555555554444 34445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 197 MEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 197 MEknlisMarEvEKLRaElanae~r 221 (276)
+.+.+..|..++++|-.++.|++-+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577777777777777777777643
No 277
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.23 E-value=27 Score=33.29 Aligned_cols=37 Identities=30% Similarity=0.549 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
+..++..+..||+.|..--.++..+++.+..+..+.+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~ 79 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSK 79 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555544444
No 278
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.11 E-value=1.3e+02 Score=34.14 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
|+-|.| +.|.++-++-|||+.++.|-.
T Consensus 579 elkk~i-daL~alrrhke~LE~e~mnQq 605 (1195)
T KOG4643|consen 579 ELKKYI-DALNALRRHKEKLEEEIMNQQ 605 (1195)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhh
Confidence 333433 457788999999999987654
No 279
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=78.00 E-value=45 Score=31.74 Aligned_cols=92 Identities=11% Similarity=0.175 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
+++++.++++++..+.+..+...++++...+++.|.+.=.++--..+.|++..+.++.-+.+.+ ..
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~--------------~~ 162 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQI--------------GT 162 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH--------------HH
Confidence 3444445555554544445555555666666666655444443444556666555544443322 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 197 MEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 197 MEknlisMarEvEKLRaElanae~r~ 222 (276)
++..+......++.++..+.+..=+|
T Consensus 163 ~~~~l~~~~~~l~~~~~~l~~~~I~A 188 (370)
T PRK11578 163 IDAQIKRNQASLDTAKTNLDYTRIVA 188 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEEC
Confidence 33334444445566666666555444
No 280
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=78.00 E-value=32 Score=27.80 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=16.4
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHH
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEV 128 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~ 128 (276)
.....+|.+++-++.+..||..+-.|.
T Consensus 24 ~q~~~le~~~~E~~~v~~eL~~l~~d~ 50 (110)
T TIGR02338 24 TQKQQVEAQLKEAEKALEELERLPDDT 50 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 333467777777777776766664443
No 281
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.80 E-value=1e+02 Score=32.76 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=44.6
Q ss_pred HHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhHHHHHHHHH-----Hhhhhhhhhhhh
Q 039268 48 HAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEI-----RAEQEVHVRDLV-----EKGLKLEADLRA 113 (276)
Q Consensus 48 ~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i-----~ae~e~q~R~l~-----ek~~KmEAelra 113 (276)
..||..+--||++|+..--+|+.+|..+..-+--+..+..++ +-++++..+++. +++.|||++|.-
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkk 405 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKK 405 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367999999999999998899888776544443333333333 344555555553 788899987753
No 282
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=77.59 E-value=42 Score=28.22 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=27.8
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 107 LEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 107 mEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
-+-++...+.+-..+..+.+|+..|...-+-|..++..+.+++.-++.
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~ 94 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEE 94 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666666666666554443
No 283
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=77.44 E-value=91 Score=32.05 Aligned_cols=147 Identities=25% Similarity=0.328 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHH---HHHHhhhhhhhhhhhchhhH----HHHHHHHHHHHHHHHHH-
Q 039268 69 QRELAAAKEELHRMN-----LVIGEIRAEQEVHVR---DLVEKGLKLEADLRATEPLK----KEAVQLRAEVQKLNNLR- 135 (276)
Q Consensus 69 rqeLaaaq~Elqrl~-----~~~~~i~ae~e~q~R---~l~ek~~KmEAelra~e~lk----~El~q~raE~q~L~~~R- 135 (276)
..||...++|-.+|. ++|.+|.+=+-.+-- --++|+.-+-.+ +++|+ .||+.|.-|++.|...=
T Consensus 362 qRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsd---veaLRrQyleelqsvqRELeVLSEQYS 438 (593)
T KOG4807|consen 362 QRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSD---VEALRRQYLEELQSVQRELEVLSEQYS 438 (593)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776664 455555554443322 223444443332 23343 35566666665554321
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHHHHhhhhh-----------HHhhhHHHHHHHHHH
Q 039268 136 ------NELNGKVQTLQKDLAKLQADNQQIPLLRAEI-DGLHQELMHARAAVDY-----------EKKANIELMEQRQAM 197 (276)
Q Consensus 136 ------qeL~~qvq~l~~eL~r~~ad~qqipal~aEi-e~lrqElqr~Raa~Ey-----------EKk~~~e~~Eq~qaM 197 (276)
--|...+..-.+-|-+-+-++|.+.+--.|+ ..|-.||.++|+-+-- +|.++ |+-==+.+-
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkday-ELEVLLRVK 517 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAY-ELEVLLRVK 517 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchh-hHHHHHHhh
Confidence 1122233333344667777888888888888 4578888888864432 22222 111224455
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 039268 198 EKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 198 EknlisMarEvEKLRaElanae 219 (276)
|..+--+.+||.-|+-||..+-
T Consensus 518 EsEiQYLKqEissLkDELQtal 539 (593)
T KOG4807|consen 518 ESEIQYLKQEISSLKDELQTAL 539 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778899999999998873
No 284
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=77.36 E-value=92 Score=32.10 Aligned_cols=165 Identities=16% Similarity=0.197 Sum_probs=89.5
Q ss_pred CChhhhHHHHHHHHHHHhhh--cccc-ccchhhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 039268 35 PHPALLEEELEIQHAEIQRL--LGDN-RRLVEDR--MAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 35 p~P~~LEe~l~~Q~~EiqrL--l~dN-qRLaatH--vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
|.-..||++|..=..++..+ +.+| .-+.|.= ..|+.++....+.|..+=.....++.+--.|+.+|-+...+|..
T Consensus 161 ~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 161 PAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33455777775554444444 2222 2222211 12344445555555555555555666666888888888888877
Q ss_pred hhhhc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 110 DLRAT--EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 110 elra~--e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
+==.. ..+..++.+++..+.. ....|..+ .+..+...++.+..+|..+-..+|.|-+++
T Consensus 241 ~gy~l~~~~i~~~i~~i~~~l~~--------------~~~~L~~l-----~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak 301 (560)
T PF06160_consen 241 EGYYLEHLDIEEEIEQIEEQLEE--------------ALALLKNL-----ELDEVEEENEEIEERIDQLYDILEKEVEAK 301 (560)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH--------------HHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42211 1233344443332222 22222111 234455666777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 188 IELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
..--+....+.+-+-.+......|..|+...
T Consensus 302 ~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 302 KYVEKNLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666666666666666666666666544
No 285
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=76.95 E-value=80 Score=31.99 Aligned_cols=122 Identities=18% Similarity=0.259 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh-----hh-hhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 69 QRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEA-----DL-RATEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 69 rqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEA-----el-ra~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
..|+...++||..|.+...+.+.+-..-|-.+.+++.++=. .. -.+--|...-..+..+.+.|..-=.+|..-|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~V 229 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLV 229 (424)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777766666666666655333 00 0123344455566677778888888888888
Q ss_pred HHHHHHHH--HHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH
Q 039268 143 QTLQKDLA--KLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL 190 (276)
Q Consensus 143 q~l~~eL~--r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~ 190 (276)
+.|.+|+. +.+-..+|+-.+..||+.+..+|...-..|.-||-.--..
T Consensus 230 E~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKi 279 (424)
T PF03915_consen 230 EDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKI 279 (424)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 88888854 4556788899999999999999999988888887665433
No 286
>PF14182 YgaB: YgaB-like protein
Probab=76.82 E-value=27 Score=27.87 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
+|.-+++|+.+ -|.+.++|...+-+. .+-.++.||..|+++|.-.+..|+-
T Consensus 15 ~LL~LQsElER-----------CqeIE~eL~~l~~ea-~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 15 KLLFLQSELER-----------CQEIEKELKELEREA-ELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777 444455554444332 3455666666666666666666543
No 287
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=76.80 E-value=38 Score=27.43 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=27.4
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 178 AAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 178 aa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
.|+++-++.-..+.++.+.+++++.....++..+.+.+.
T Consensus 86 eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 86 EAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666777777778888777777777776654
No 288
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.68 E-value=76 Score=35.07 Aligned_cols=143 Identities=17% Similarity=0.272 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---------HHHHHHHHhhhhhhhhhhh
Q 039268 43 ELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE---------VHVRDLVEKGLKLEADLRA 113 (276)
Q Consensus 43 ~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e---------~q~R~l~ek~~KmEAelra 113 (276)
....|..|+.+++.+|.+|-..-.-|-.+|.--...++-+.+.+.+...... .|+-++..+ +
T Consensus 731 ~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~---l------ 801 (970)
T KOG0946|consen 731 ASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKN---L------ 801 (970)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHh---h------
Confidence 3345556666666666666666666666666556666666555553322221 233333322 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
...+.-+++...+++++....|.|...+......|..+..- -+.+-.|..-..|++.-.-.-|.+=++.-.++.|-
T Consensus 802 -~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~---~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk 877 (970)
T KOG0946|consen 802 -SEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESMGST---EKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEK 877 (970)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcc---ccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhh
Confidence 11222345555555555555555555554444443333221 12333444555555555555555555555555555
Q ss_pred HHHHH
Q 039268 194 RQAME 198 (276)
Q Consensus 194 ~qaME 198 (276)
..+++
T Consensus 878 ~~sl~ 882 (970)
T KOG0946|consen 878 ISSLE 882 (970)
T ss_pred hhhHH
Confidence 44433
No 289
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=76.60 E-value=35 Score=27.16 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
-|-+||.++.+.+.+|.....|++..+...+..
T Consensus 50 rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 50 RLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566677777777777777766666666554
No 290
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=76.25 E-value=51 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.403 Sum_probs=37.0
Q ss_pred HhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 177 RAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 177 Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
=.|+|+-||-..++-.-.+.|+.+|--++..+..|..++...
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899889999999999999999999999999887654
No 291
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=76.22 E-value=45 Score=27.97 Aligned_cols=38 Identities=34% Similarity=0.435 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHH
Q 039268 44 LEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHR 81 (276)
Q Consensus 44 l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqr 81 (276)
|-.|.+.|+|||.-+.--+.-.+.+.++|.+.+.++..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999987755577788899999998888765
No 292
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=76.08 E-value=51 Score=34.29 Aligned_cols=48 Identities=31% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 166 IDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 166 ie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
|--||-.|+ =+.+|||||.+.+.+.|--. +|-.-.+=+.+.+.|+...
T Consensus 232 I~~lrp~L~--~~sveyEkk~Fqk~l~~~~~---~l~~t~~WL~~~~~e~~~~ 279 (513)
T KOG1981|consen 232 IRILRPALQ--ENSVEYEKKKFQKLLGQAPV---SLPFTRQWLDKARSELETE 279 (513)
T ss_pred HHHhhHHHH--HhhHHHHHHHHHHHHhhCCC---CCcHHHHHHHHHhcccccc
Confidence 355666777 67899999999999993221 1222333388888888744
No 293
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=75.96 E-value=1.4 Score=39.07 Aligned_cols=31 Identities=39% Similarity=0.534 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhHHHHHHHH
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQREL 72 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeL 72 (276)
++||.+| .|-..|...+|||-+.---|||||
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888 677889999999888887788777
No 294
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=75.81 E-value=20 Score=26.82 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 117 LKKEAVQLRAEVQKLN-NLRNELNGKVQTLQKDLAKLQADNQ 157 (276)
Q Consensus 117 lk~El~q~raE~q~L~-~~RqeL~~qvq~l~~eL~r~~ad~q 157 (276)
...-|.|...|++.+- +.|..+..+|.....+|.+++.+++
T Consensus 37 a~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 37 AEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666666665 6777788888887777777766553
No 295
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.76 E-value=43 Score=28.49 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 193 QRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
+.++.++..-..-.++++|+++|-++=.-+
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 567888888888888999999988765443
No 296
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.73 E-value=59 Score=29.03 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHH-HHHHHHHHHHHHHHhhhh
Q 039268 133 NLRNELNGKVQTLQKDLAKLQADNQQIPLLR-AEIDGLHQELMHARAAVD 181 (276)
Q Consensus 133 ~~RqeL~~qvq~l~~eL~r~~ad~qqipal~-aEie~lrqElqr~Raa~E 181 (276)
..|.+|..+++.+.+++..+++++++.-..- ..|+.|++++..++.++.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777766666665322111 346777777777776654
No 297
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=75.67 E-value=26 Score=36.88 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhh
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEAD 110 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAe 110 (276)
.++|.+...++||.++.........|...+.+.+-+....+++.
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 386 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQ 386 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888877777777766666666666666653
No 298
>PRK11281 hypothetical protein; Provisional
Probab=75.46 E-value=88 Score=35.38 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRA 91 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~a 91 (276)
+|++.+..+-++++.....+..++.
T Consensus 84 ~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 84 QLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3444444444444444444444433
No 299
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=75.39 E-value=70 Score=34.48 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHH
Q 039268 160 PLLRAEIDGLHQELM 174 (276)
Q Consensus 160 pal~aEie~lrqElq 174 (276)
-..+.|++.+-.|+.
T Consensus 575 ~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 575 KALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555444444
No 300
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.32 E-value=53 Score=28.34 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhc
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAME-----KNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME-----knlisMarEvEKLRaElana 218 (276)
.++..++.++.++....+-.++.+.++-.++-.+. .+++.-..+++.||.+|.+-
T Consensus 105 ~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l 164 (177)
T PF13870_consen 105 EELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKEL 164 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444444444444433222 34555666666666666543
No 301
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=75.27 E-value=11 Score=30.62 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhH
Q 039268 137 ELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYE 183 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 183 (276)
.+.++++.+.+++...+.-+++++.++++++.+++++......+=.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45677888899999999999999999999999999999888877654
No 302
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.06 E-value=51 Score=33.94 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 039268 227 GPYGMNF 233 (276)
Q Consensus 227 ~~Yg~~y 233 (276)
-+||-.+
T Consensus 153 ~P~GlG~ 159 (472)
T TIGR03752 153 LPVGLGL 159 (472)
T ss_pred CCcccCC
Confidence 3555444
No 303
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=74.98 E-value=1.2e+02 Score=32.07 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 128 VQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 128 ~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
++++...-.-|..++..+++----...|++.+-....+|+.+.+-++-.-.-++-.+.++.++.+-++..++-|-.+-.+
T Consensus 318 l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~ 397 (570)
T COG4477 318 LEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDE 397 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333334444444444333334455556666667777777777777777777778877777777777777777777
Q ss_pred HHHHHHHhhhc
Q 039268 208 VEKLRAELTNF 218 (276)
Q Consensus 208 vEKLRaElana 218 (276)
.+|++..|..-
T Consensus 398 q~~~~e~L~~L 408 (570)
T COG4477 398 QEKVQEHLTSL 408 (570)
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 304
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=74.94 E-value=61 Score=36.89 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------------------HhhhhhHHh
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA--------------------RAAVDYEKK 185 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~--------------------Raa~EyEKk 185 (276)
.||+++.+.=-+-++.+..+.+|--|.+....---.| .+||.|+..||.. ..+|+.++|
T Consensus 1200 tdvK~missf~d~laeiE~LrnErIKkHGaSkePLDl-SDlDkLk~~LQ~iNQ~LV~~LIn~iR~slnqme~~tf~~q~~ 1278 (1439)
T PF12252_consen 1200 TDVKSMISSFNDRLAEIEFLRNERIKKHGASKEPLDL-SDLDKLKGQLQKINQNLVKALINTIRVSLNQMEVKTFEEQEK 1278 (1439)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHhhccCCCCCccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 3666666666777777777777755554433222222 4444444444433 457888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 186 ANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 186 ~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
.-..++++.-.++|.|.+= .-.+|+|++|.+
T Consensus 1279 eiq~n~~ll~~L~~tlD~S-~~a~Kqk~di~k 1309 (1439)
T PF12252_consen 1279 EIQQNLQLLDKLEKTLDDS-DTAQKQKEDIVK 1309 (1439)
T ss_pred HHHHHHHHHHHHHHHhcch-HHHHHHHHHHHH
Confidence 8888999998888888652 225677777654
No 305
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=74.93 E-value=28 Score=26.77 Aligned_cols=59 Identities=24% Similarity=0.310 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
.+|..|+.|-+.|..--...+..|.--+..+.++-.+...+-+.+-..-.+++.|+..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777666667777766655555555555554444444444444444443
No 306
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.69 E-value=14 Score=27.57 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 122 VQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 122 ~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
.++-.||+.|..-=..|+.+|..+..|++-++
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 307
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=74.64 E-value=74 Score=36.23 Aligned_cols=137 Identities=18% Similarity=0.352 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhH-------HHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMN-LVIGEIRAEQ-------EVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNE 137 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~-~~~~~i~ae~-------e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rqe 137 (276)
-.||..+..++|||--|. ++..-+-++- |.-+-++..|+.-||..=. ..+.+..-.+-.|...+||
T Consensus 1066 ~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~------~~l~~ikK~ia~lnnlqqE 1139 (1439)
T PF12252_consen 1066 SELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKL------DNLDSIKKAIANLNNLQQE 1139 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccc------ccHHHHHHHHHHHHHHHHH
Confidence 357777777777776666 2222222222 2344456666776665211 1333344444455555555
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH---------------HHHHhhhhhHHhhhHHHHHHHHHHHHHHH
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL---------------MHARAAVDYEKKANIELMEQRQAMEKNLV 202 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl---------------qr~Raa~EyEKk~~~e~~Eq~qaMEknli 202 (276)
|.-|..|-.|.+.+...|.= ++||.|-+-| -+-=++++.||-. ++--++.|.+++-
T Consensus 1140 ----lklLRnEK~Rmh~~~dkVDF--SDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PK---nltdvK~missf~ 1210 (1439)
T PF12252_consen 1140 ----LKLLRNEKIRMHSGTDKVDF--SDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPK---NLTDVKSMISSFN 1210 (1439)
T ss_pred ----HHHHHhHHHhhccCCCcccH--HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCC---chhhHHHHHHHHH
Confidence 34566666666655444221 3344443333 3333444433333 3336788999999
Q ss_pred HHHHHHHHHHHHhhh
Q 039268 203 SMAREVEKLRAELTN 217 (276)
Q Consensus 203 sMarEvEKLRaElan 217 (276)
....|||-||-|--+
T Consensus 1211 d~laeiE~LrnErIK 1225 (1439)
T PF12252_consen 1211 DRLAEIEFLRNERIK 1225 (1439)
T ss_pred hhhhHHHHHHHHHhh
Confidence 999999999988543
No 308
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=74.61 E-value=44 Score=31.92 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGE 88 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~ 88 (276)
-..|++||.-.-.+++-|.....+
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~q~~k 182 (289)
T COG4985 159 GDPLERELQKRLLEVETLRDQVDK 182 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888777777666555543
No 309
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=74.21 E-value=1.1e+02 Score=31.26 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHH----HhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH---hh--h----HHHHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKL----QADNQQIPLLRAEIDGLHQELMHARAAVDYEK---KA--N----IELMEQRQAMEKNLVS 203 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~----~ad~qqipal~aEie~lrqElqr~Raa~EyEK---k~--~----~e~~Eq~qaMEknlis 203 (276)
.|.+++..+.-+|..+ ..+.-+|+.|+++|+.|+++|...|+-+--.+ .. . ..+.=+.+--|+.|.+
T Consensus 290 ~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~~~~g~~~la~~laeYe~L~le~efAe~~y~s 369 (434)
T PRK15178 290 GFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLSNKLGSQGSSESLSLFEDLRLQSEIAKARWES 369 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433 34788999999999999999998887763211 01 1 1222233344556655
Q ss_pred HHHHHHHHHHHh
Q 039268 204 MAREVEKLRAEL 215 (276)
Q Consensus 204 MarEvEKLRaEl 215 (276)
-..=+|+=|.|.
T Consensus 370 AlaaLE~AR~EA 381 (434)
T PRK15178 370 ALQTLQQGKLQA 381 (434)
T ss_pred HHHHHHHHHHHH
Confidence 555566666664
No 310
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=74.15 E-value=1.2e+02 Score=31.68 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 039268 162 LRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~ 180 (276)
+..+++.+..++..+.+.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443333
No 311
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=73.91 E-value=51 Score=27.46 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKD---LAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~e---L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+.++.+....+..|...+.+........... ...+..=..-|..|..-|...++.+.+++..+|.-++.-.+-.-..
T Consensus 29 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~ 108 (146)
T PRK07720 29 VSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEV 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554443332111 1122222234566677777777888888888877777777777777
Q ss_pred HHHHH
Q 039268 195 QAMEK 199 (276)
Q Consensus 195 qaMEk 199 (276)
++|||
T Consensus 109 k~~ek 113 (146)
T PRK07720 109 KKYEK 113 (146)
T ss_pred HHHHH
Confidence 77765
No 312
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.88 E-value=64 Score=28.57 Aligned_cols=106 Identities=23% Similarity=0.341 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchh
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMN-LVIGEIRAEQEVHVRDLVEKGLKLEADLRATEP 116 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~-~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~ 116 (276)
.+|+.-|..-...|..+-..=-+..+...-|++++..+..++..+. .+..++++-.|---|..+.+...++.. .+.
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~---~~~ 102 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ---AER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHH
Confidence 4555555444444444433334445555556666666666666655 334445665666566666666666652 233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
++..+.++...+.+|...-.+|..++..+.
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k 132 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELK 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333
No 313
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=73.86 E-value=41 Score=30.01 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 147 KDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 147 ~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRa 213 (276)
.=|+.++...-+.-.+..|.+.|+.|+..+..-++.-.+.+.++..+.++++.++-+|..=+++-|-
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666666777788888888888888888888888889999999999998888877776653
No 314
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=73.61 E-value=1.4e+02 Score=32.49 Aligned_cols=108 Identities=24% Similarity=0.317 Sum_probs=69.7
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------hhcchh
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA------------------DNQQIP 160 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a------------------d~qqip 160 (276)
++.++.-+|++ ..+.+..+|.....+++.+...-+|+...+..+..+|..++. =-.+++
T Consensus 593 el~eelE~le~---eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~ 669 (769)
T PF05911_consen 593 ELEEELEKLES---EKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLK 669 (769)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44444444444 223333444444555555555555555555555555443221 122456
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 161 LLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVE 209 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvE 209 (276)
.+.+|+..|+.-+..+-..|+.||....|+...-+.+|-.|-++..+..
T Consensus 670 ~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 670 DLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 6788999999999999999999999999999988999888888887753
No 315
>PLN02939 transferase, transferring glycosyl groups
Probab=73.51 E-value=1.6e+02 Score=33.04 Aligned_cols=106 Identities=30% Similarity=0.319 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH-HHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAE------QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNE-LNG 140 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae------~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rqe-L~~ 140 (276)
|-+||...+.|.--|...|..++++ .|-.+..|-....-|++-|+ .|..-+..++.|+-+|.....| +..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLR---ELESKFIVAQEDVSKLSPLQYDCWWE 300 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhhccchhHHHHHH
Confidence 4455555555555555555555543 34444444444444555333 3444556677777777776655 344
Q ss_pred HHHHHH-------HHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 141 KVQTLQ-------KDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 141 qvq~l~-------~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
+|+.+. ....++-.-++|--.|+.-+|.|..=|..+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (977)
T PLN02939 301 KVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA 343 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 554433 333344444555556666666665555443
No 316
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.00 E-value=1.3e+02 Score=31.63 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhhhhhhh-----------hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 039268 93 QEVHVRDLVEKGLKLEADL-----------RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPL 161 (276)
Q Consensus 93 ~e~q~R~l~ek~~KmEAel-----------ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipa 161 (276)
.+-.-|+|-+..-|+++-+ -..+-|+.|..-...|++.|.+-+.+|..||.. ..-...+...
T Consensus 300 l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k-------q~Is~e~fe~ 372 (622)
T COG5185 300 LREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK-------QGISTEQFEL 372 (622)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------cCCCHHHHHH
Confidence 3444555555555555533 334556677777777777777777777666542 2222223333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHH
Q 039268 162 LRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEK 184 (276)
+-+|-+.|-.||.+.-..++.-.
T Consensus 373 mn~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 373 MNQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHHhcchHHHHH
Confidence 44555555555555544444333
No 317
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.88 E-value=89 Score=30.69 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP 160 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip 160 (276)
+..|.|-++++.|.+.|.-..-+|.+....+.+-.+.+.++.+-.|
T Consensus 93 ~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~a 138 (389)
T KOG4687|consen 93 EETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGA 138 (389)
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhccc
Confidence 3445555555555555555555555555555555566665555444
No 318
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=72.67 E-value=97 Score=30.10 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHH----hhhccccccchhhHHHH
Q 039268 40 LEEELEIQHAEI----QRLLGDNRRLVEDRMAM 68 (276)
Q Consensus 40 LEe~l~~Q~~Ei----qrLl~dNqRLaatHvaL 68 (276)
+|-+|++|-..| +.|..+||||-..-.++
T Consensus 46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~ 78 (333)
T KOG1853|consen 46 IEAELESQLDQLETRNRDLETRNQRLTTEQERN 78 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 34555555555444333
No 319
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=72.64 E-value=49 Score=32.69 Aligned_cols=147 Identities=17% Similarity=0.186 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHH---HH-HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMNLVIGEIR---AEQE---VH-VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLR 135 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~~~~~~i~---ae~e---~q-~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~R 135 (276)
..-...+...+.+..-+..+........ +..+ .. |..|-.+..-+.. ...-+..++...|..+..+.+..
T Consensus 246 ~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~---~~~~l~~~~~~~~p~~~~~~~q~ 322 (458)
T COG3206 246 TQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQ---QIADLSTELGAKHPQLVALEAQL 322 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHH---HHHHHHHhhcccChHHHhHHHHH
Confidence 4445555666666666666665555444 2222 22 3333333333332 22234445555566555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHhhhhhHHhhh---HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 136 NELNGKVQTLQKDLAKLQADNQ-QIPLLRAEIDGLHQELMHARAAVDYEKKAN---IELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~q-qipal~aEie~lrqElqr~Raa~EyEKk~~---~e~~Eq~qaMEknlisMarEvEKL 211 (276)
.++..+++.-.+ ++.+... ++..+...+..|.+++..+++....-.+.- .++.-+.++-...+.++-.=.+.+
T Consensus 323 ~~~~~~~~~e~~---~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~ 399 (458)
T COG3206 323 AELRQQIAAELR---QILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQEL 399 (458)
T ss_pred HHHHHHHHHHHH---HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444333 3332221 256667777777777777776655544433 344556666666777776655555
Q ss_pred HHHh
Q 039268 212 RAEL 215 (276)
Q Consensus 212 RaEl 215 (276)
....
T Consensus 400 ~~~~ 403 (458)
T COG3206 400 SIQE 403 (458)
T ss_pred HHhh
Confidence 5544
No 320
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=72.55 E-value=35 Score=32.59 Aligned_cols=79 Identities=23% Similarity=0.362 Sum_probs=56.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
+...-.+|+.-+..++++++.+...+.++..|.. .||+ ..+--|.||...+.=++.|.++|=-.+.
T Consensus 160 ~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~-----------~Le~---KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 160 LNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEA-----------NLEA---KIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 4444456677777777777777777776665532 3344 3445788999999999999999988888
Q ss_pred HHHHHHHHHHHHH
Q 039268 141 KVQTLQKDLAKLQ 153 (276)
Q Consensus 141 qvq~l~~eL~r~~ 153 (276)
+-..+..||+++-
T Consensus 226 EyEklE~EL~~lY 238 (267)
T PF10234_consen 226 EYEKLEEELQKLY 238 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876654
No 321
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=72.34 E-value=1.2e+02 Score=30.93 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q 039268 167 DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMA 205 (276)
Q Consensus 167 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMa 205 (276)
+.|++||.+...+ ++.+...++.+|...|++.+....
T Consensus 329 ~~L~~eL~~~~~~--~~~~l~~~l~~~~~e~~~~~~~~i 365 (582)
T PF09731_consen 329 EELRQELKRQEEA--HEEHLKNELREQAIELQREFEKEI 365 (582)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666665 345566666667777766555443
No 322
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=72.17 E-value=77 Score=28.73 Aligned_cols=148 Identities=16% Similarity=0.267 Sum_probs=66.4
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
+.+=..+-..--.|++-|..+=.++..+...+..++.. +......+.+ -+.+.|...|.+..+++..+...
T Consensus 30 L~~~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~--------~s~~eLeq~l~~~~~~L~~~q~~ 100 (240)
T PF12795_consen 30 LDEIKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILAN--------LSLEELEQRLSQEQAQLQELQEQ 100 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCccc--------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555555555555544433 2111111111 12344555666666666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 135 RNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKA--NIELMEQRQAMEKNLVSMAREVEKLR 212 (276)
Q Consensus 135 RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~--~~e~~Eq~qaMEknlisMarEvEKLR 212 (276)
.+++..++..+..-..+++ ..|...++.++-++..+.--+.. ..-.-.+.-..+-.+...-.++.-|+
T Consensus 101 l~~~~~~l~~~~~~p~~aq----------~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~~~l~~~~~~le 170 (240)
T PF12795_consen 101 LQQENSQLIEIQTRPERAQ----------QQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAELAALEAQIEMLE 170 (240)
T ss_pred HHHHHHHHHHHHccHHHHH----------HHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444444444 23333333333333322211000 12222333344445555556666666
Q ss_pred HHhhhccCC
Q 039268 213 AELTNFDGR 221 (276)
Q Consensus 213 aElanae~r 221 (276)
.|+.+..+|
T Consensus 171 ~el~s~~~r 179 (240)
T PF12795_consen 171 QELLSNNNR 179 (240)
T ss_pred HHHHCcHHH
Confidence 666655443
No 323
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.04 E-value=1.4e+02 Score=32.00 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhhhhhHHhhh
Q 039268 167 DGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 167 e~lrqElqr~Raa~EyEKk~~ 187 (276)
.-+-.+++++-++||--|+..
T Consensus 665 q~~~~~~~~L~~~iET~~~~~ 685 (741)
T KOG4460|consen 665 QLIPDQLRHLGNAIETVTMKK 685 (741)
T ss_pred HHhHHHHHHHHHHHHHHHHHH
Confidence 333444444444554444433
No 324
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=71.47 E-value=69 Score=27.92 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=29.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
+.|++.+-.|.+++...++++..|+..+.++++=.+
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888889999999999999999888887776544
No 325
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.32 E-value=1e+02 Score=29.91 Aligned_cols=72 Identities=28% Similarity=0.429 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHh---hhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKLQA---DNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~a---d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRa 213 (276)
+|..++..+.++|...+. .+-++-.|.+|++.++.+.. .-..-=.++..|.|..-..|+.+-++++.+|.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~-------e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAR-------EIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444432 22233444444444444333 22333356777778888888888888777776
Q ss_pred Hh
Q 039268 214 EL 215 (276)
Q Consensus 214 El 215 (276)
+.
T Consensus 208 ea 209 (294)
T COG1340 208 EA 209 (294)
T ss_pred HH
Confidence 64
No 326
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=71.17 E-value=1.1e+02 Score=30.03 Aligned_cols=168 Identities=21% Similarity=0.242 Sum_probs=74.8
Q ss_pred CCChhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHhhhhhhh
Q 039268 34 PPHPALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ----EVHVRDLVEKGLKLEA 109 (276)
Q Consensus 34 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~----e~q~R~l~ek~~KmEA 109 (276)
++.+.-|-.+++.-..+ |.-|-..--.+|..-...+.|+..|......+.+-- |-=.-.|+.|+..+..
T Consensus 19 ~~t~~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~k 91 (310)
T PF09755_consen 19 SATREQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKK 91 (310)
T ss_pred CCchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554333 444444444455555666666666665555444333 3334445544444433
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------cchhHHHHHHHHHHHHHHHHH
Q 039268 110 DLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN------------QQIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 110 elra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~------------qqipal~aEie~lrqElqr~R 177 (276)
|-.... ..+..|=. .....|+.++..+.+|-..+..-+ .+|-.|.+|....+.++.++|
T Consensus 92 eKe~L~------~~~e~EEE---~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr 162 (310)
T PF09755_consen 92 EKETLA------LKYEQEEE---FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLR 162 (310)
T ss_pred HHHHHH------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 211110 11111111 223456666666666633222211 223333333333444444444
Q ss_pred h-hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 178 A-AVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 178 a-a~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
. -|+.|...-.|.=.=+..+-|-|..|+.|=..|.+.|..
T Consensus 163 ~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 163 REKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 122222222222222334556666777777777777654
No 327
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=70.80 E-value=19 Score=34.78 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
|+++||.+|-.-.....||..-.. .|..+-+||...|..+..-+--++ |++-.-+.||+.|.+++..+--++.-
T Consensus 237 ria~Le~eLAmQKs~seElkssq~---eL~dfm~eLdedVEgmqsTiliLQ---q~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQE---ELYDFMEELDEDVEGMQSTILILQ---QKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHH---HHHHHHHHHHHHHhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HH
Q 039268 183 EK 184 (276)
Q Consensus 183 EK 184 (276)
+|
T Consensus 311 ~~ 312 (330)
T KOG2991|consen 311 KK 312 (330)
T ss_pred cc
No 328
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=70.78 E-value=69 Score=27.65 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039268 200 NLVSMAREVEKLRAELTN 217 (276)
Q Consensus 200 nlisMarEvEKLRaElan 217 (276)
++.....+-.++|..+.+
T Consensus 113 ~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 113 ELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333344444443333
No 329
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=70.69 E-value=37 Score=30.76 Aligned_cols=68 Identities=29% Similarity=0.371 Sum_probs=38.0
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHH
Q 039268 57 DNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE-------VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAE 127 (276)
Q Consensus 57 dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e-------~q~R~l~ek~~KmEAelra~e~lk~El~q~raE 127 (276)
-|.-|-...-.|.++|..++++|+.++..-..-+.+-. .+..+++.|+..+|. +...|++|+.+++.+
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~---a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV---ACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45667777777777777777777777665444443332 334444555555555 344444444444443
No 330
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=70.49 E-value=40 Score=27.16 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
.|--.|+.|+.+.|+=+ +++.+--.+++..
T Consensus 51 ~EN~rL~ee~rrl~~f~--~~gerE~l~~eis 80 (86)
T PF12711_consen 51 MENIRLREELRRLQSFY--VEGEREMLLQEIS 80 (86)
T ss_pred HHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence 45567888888888764 5555444443333
No 331
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=70.48 E-value=1.4 Score=45.10 Aligned_cols=77 Identities=21% Similarity=0.390 Sum_probs=0.0
Q ss_pred HHHhhhccccccchhhHHHHH---HHHHHHHHHHHHHHHH-----------HHHhhhhHHHHHHHHHHhhhhhhhhhhhc
Q 039268 49 AEIQRLLGDNRRLVEDRMAMQ---RELAAAKEELHRMNLV-----------IGEIRAEQEVHVRDLVEKGLKLEADLRAT 114 (276)
Q Consensus 49 ~EiqrLl~dNqRLaatHvaLr---qeLaaaq~Elqrl~~~-----------~~~i~ae~e~q~R~l~ek~~KmEAelra~ 114 (276)
.||..|= +||-..|-.|. ++|....+..+.|... +...+.|||.|||+++++.+-+|.|||-
T Consensus 376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrr- 451 (495)
T PF12004_consen 376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRR- 451 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhh-
Confidence 3676553 44444444442 5666677776666433 3478899999999999999999996653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNEL 138 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL 138 (276)
=|.|.+.+...+|-+
T Consensus 452 ---------e~~~m~~~~~~kqri 466 (495)
T PF12004_consen 452 ---------EHAEMQAVLDHKQRI 466 (495)
T ss_dssp ------------------------
T ss_pred ---------hHHHHhcccccchHH
Confidence 344555555444443
No 332
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.42 E-value=1.4e+02 Score=31.02 Aligned_cols=67 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 146 QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEK-KANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 146 ~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK-k~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
++=|+++++.--+|-....+-.++++|+--.-..|+-|+ |.+-.++|+ +..++-.+-.|.+.|-.+|
T Consensus 451 ykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEk---l~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 451 YKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYLKSLEK---LHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHH---HHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666777776655444444433 222223333 3334555555555555544
No 333
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=70.38 E-value=39 Score=26.02 Aligned_cols=59 Identities=25% Similarity=0.351 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|+..+..+|++|.+.=-++..+++.+..| +=.+-++||.+-+..-....++..+|+.+.
T Consensus 3 d~~eLk~evkKL~~~A~~~kmdLHDLaEd---LP~~w~~i~~vA~~ty~a~~~l~~ak~~L~ 61 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQAKMDLHDLAED---LPTNWEEIPEVAQKTYDAYAELDEAKAELK 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888889999999999999999999 778889999998888777777777776654
No 334
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=70.37 E-value=1.1e+02 Score=29.94 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
..++..=..+-..++.|.-|++..+ |..+|.-|+ ..+++||++.+.+.++...
T Consensus 137 ~~~V~~lr~if~~le~MklD~AN~~------------i~~~rp~L~--~~sv~yEr~~F~~~l~~~~ 189 (441)
T PF05794_consen 137 TDIVDGLRFIFEILELMKLDMANFQ------------IRSLRPQLI--EHSVEYERKKFQERLEKGP 189 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH--HHHHHHHHHHHHHHHHhCc
Confidence 5555555666666666666666554 677777774 4569999999999995543
No 335
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.36 E-value=1.6e+02 Score=31.69 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 039268 168 GLHQELMHARA 178 (276)
Q Consensus 168 ~lrqElqr~Ra 178 (276)
.+.+||++.+.
T Consensus 636 ~~~~EL~~~~~ 646 (717)
T PF10168_consen 636 EFKKELERMKD 646 (717)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 336
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=70.34 E-value=21 Score=38.59 Aligned_cols=68 Identities=34% Similarity=0.407 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHH----hhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 132 NNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHAR----AAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 132 ~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~R----aa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
.+++.=|.+|||.|..|-+-+.++- .-+...| +.+|.-.|.+.-++..+|+=|+.|.++++|
T Consensus 381 ~~v~~gl~aq~~al~~era~l~a~w--------------~rv~egrr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re 446 (828)
T PF04094_consen 381 STVREGLNAQVQALAAERAALDAEW--------------ARVDEGRRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRE 446 (828)
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHH--------------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888744333333 2233344 678899999999999999999999999999
Q ss_pred HHHHHH
Q 039268 208 VEKLRA 213 (276)
Q Consensus 208 vEKLRa 213 (276)
+|.=|.
T Consensus 447 ~eeer~ 452 (828)
T PF04094_consen 447 TEEERQ 452 (828)
T ss_pred HHHHHH
Confidence 997664
No 337
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.07 E-value=54 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qv 142 (276)
..+++++.++++|...++.|..+.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666665554
No 338
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=69.93 E-value=97 Score=28.98 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=17.8
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHH
Q 039268 54 LLGDNRRLVEDRMAMQRELAAAKEELHRMN 83 (276)
Q Consensus 54 Ll~dNqRLaatHvaLrqeLaaaq~Elqrl~ 83 (276)
+.....++|..|..|.+.|...-.+|..+.
T Consensus 72 ~~~e~e~~a~~H~~la~~L~~~~~~l~~~~ 101 (269)
T cd07673 72 FKTSTEKLANCHLELVRKLQELIKEVQKYG 101 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777778777777754444444443
No 339
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=69.88 E-value=27 Score=37.27 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=44.7
Q ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 110 DLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 110 elra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
..|-.+.+.-||.++.+--|+|.+.-.++..+++.+.+++-+.+. |+..|+.|+..+-.+
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~----------eL~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQL----------ELSALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHH----------HHHHHHhHHHHHHHH
Confidence 344455688899999999999999999999999999999888774 444555555544444
No 340
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.48 E-value=96 Score=28.76 Aligned_cols=16 Identities=38% Similarity=0.509 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 039268 164 AEIDGLHQELMHARAA 179 (276)
Q Consensus 164 aEie~lrqElqr~Raa 179 (276)
.|.+.|++++..+|.+
T Consensus 103 ~Ea~~lq~el~~ar~~ 118 (246)
T PF00769_consen 103 EEAEELQEELEEARED 118 (246)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 341
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=69.46 E-value=61 Score=26.93 Aligned_cols=64 Identities=20% Similarity=0.221 Sum_probs=36.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
+.+.+-.++.+...-+.++...-..-..+++...++-.++... |-.++.+|+.|+.+|..++..
T Consensus 47 ~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~---i~~~k~~ie~lk~~L~~ak~~ 110 (139)
T PF05615_consen 47 LYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQE---IEQAKKEIEELKEELEEAKRV 110 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777766666555555444555555544444422 235566666666666666654
No 342
>smart00338 BRLZ basic region leucin zipper.
Probab=68.91 E-value=23 Score=25.83 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
=+..+..+..+++.|...-.+|..+|..+..|+..+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544444
No 343
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.43 E-value=6 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRa 213 (276)
.||++.+.=.+++++.-.|.||+
T Consensus 791 se~vnniKP~i~avt~ACEE~rk 813 (1102)
T KOG1924|consen 791 SEQVNNIKPDIVAVTAACEELRK 813 (1102)
T ss_pred HHHHhhcChHHHHHHHHHHHHHh
Confidence 46677777788888877776664
No 344
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=68.25 E-value=55 Score=32.13 Aligned_cols=28 Identities=11% Similarity=0.296 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
||.|-+.+--+-|.+|.+.....+.|++
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd 47 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKD 47 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444444444444444444
No 345
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.80 E-value=37 Score=33.03 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=46.4
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQ-KLNNLRNELNGKVQTLQKDLAKLQAD----NQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q-~L~~~RqeL~~qvq~l~~eL~r~~ad----~qqipal~aEie~lrqElqr~Raa~ 180 (276)
|+|++-+..+..-.++.+.-..++ .+..++|.|+.|.+.+..+|..+..- .+.+..++.||..+++++--.+...
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 455555554444444443333322 34456677777777777777766665 5667778888999998887666544
No 346
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.43 E-value=2.3e+02 Score=32.29 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=81.9
Q ss_pred HHHHHHHhhhhhhhhh----hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcchhHHHHHHH
Q 039268 96 HVRDLVEKGLKLEADL----RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD----NQQIPLLRAEID 167 (276)
Q Consensus 96 q~R~l~ek~~KmEAel----ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad----~qqipal~aEie 167 (276)
+..++..+.-+||.+- ...+.++..+.++..++..|...-.||...+..|..|.+.++++ +++-..|.-+|.
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k 310 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIK 310 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3444445555555543 23466788888899999999888899999999998888887776 455556666677
Q ss_pred HHHHHHHHHHh-------hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 168 GLHQELMHARA-------AVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 168 ~lrqElqr~Ra-------a~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
.+++++-.-+- ...-=+..-.+....+...+..+-++..|-..++..|+..+.+.
T Consensus 311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 77776643221 11111122234444556666777777777777777777776653
No 347
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=67.40 E-value=1.1e+02 Score=28.43 Aligned_cols=100 Identities=19% Similarity=0.242 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH----HHhhhhhHHhhhHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMH----ARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr----~Raa~EyEKk~~~e~~Eq~q 195 (276)
+|.+++..+-++.+....|.-++..+..+..+.+.-. .-+|.+.-+.|=.|.-- +=..++-.+....+.-++..
T Consensus 39 ~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A--~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~ 116 (225)
T COG1842 39 ELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA--ELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVE 116 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443322 22333333444333333 33333334444556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 196 AMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 196 aMEknlisMarEvEKLRaElanae~r 221 (276)
.|++++..+-.-|..|++...-..-|
T Consensus 117 ~l~~~~~~Le~Ki~e~~~~~~~l~ar 142 (225)
T COG1842 117 KLKKQLAALEQKIAELRAKKEALKAR 142 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888887775544433
No 348
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=67.28 E-value=1.8 Score=46.68 Aligned_cols=88 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEK 210 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEK 210 (276)
+...++.|-+++..|..-|. ..++.-..+.-.|..++..|.-+...++.....+-+..++...+|+.+..+..|++-
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld---~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee 620 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLD---HANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEE 620 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445444444432221 222333344455666777777777888888889999999999999999999999999
Q ss_pred HHHHhhhccCC
Q 039268 211 LRAELTNFDGR 221 (276)
Q Consensus 211 LRaElanae~r 221 (276)
|+.++..+++-
T Consensus 621 ~~~~~~~a~r~ 631 (859)
T PF01576_consen 621 LREALEQAERA 631 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 349
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.21 E-value=1.5e+02 Score=32.07 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039268 200 NLVSMAREVEKLRAELTN 217 (276)
Q Consensus 200 nlisMarEvEKLRaElan 217 (276)
.....-+++.+++..+.+
T Consensus 608 ~~~~~~~~l~~~~~~~~~ 625 (782)
T PRK00409 608 ELIEARKRLNKANEKKEK 625 (782)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 344444455555554433
No 350
>PF14992 TMCO5: TMCO5 family
Probab=66.80 E-value=1.1e+02 Score=29.60 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 186 ANIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 186 ~~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
.+.|.++++.. +|++.-+-+||.|---.
T Consensus 155 klkE~L~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 155 KLKEKLRRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhch
Confidence 44455588888 88888888888876654
No 351
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=66.58 E-value=51 Score=25.23 Aligned_cols=44 Identities=27% Similarity=0.252 Sum_probs=31.3
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 105 LKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 105 ~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
.|+|.=|+-.+-|+.|=.+++.++..+.+.|..|..+.+...+-
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~r 50 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777777777777777777777777777666554
No 352
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=66.40 E-value=96 Score=27.63 Aligned_cols=41 Identities=24% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 039268 42 EELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNL 84 (276)
Q Consensus 42 e~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~ 84 (276)
.++..=..+...++.+-++=|.+- .++-+..++.++..+..
T Consensus 27 ~~~~~A~~~A~~i~~~A~~eAe~~--~ke~~~eakee~~~~r~ 67 (201)
T PF12072_consen 27 KKLEQAEKEAEQILEEAEREAEAI--KKEAELEAKEEAQKLRQ 67 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 344444445555555555544433 24445555555555543
No 353
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.03 E-value=1.2e+02 Score=28.49 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=4.1
Q ss_pred hhhHHHHHH
Q 039268 38 ALLEEELEI 46 (276)
Q Consensus 38 ~~LEe~l~~ 46 (276)
.+|.+.|..
T Consensus 176 evL~~fl~~ 184 (297)
T PF02841_consen 176 EVLQEFLQS 184 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 354
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=66.02 E-value=36 Score=33.92 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLR-ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelr-a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
.|+.+.++|..+|..-+.++++|-+ +||+|+. +....|.|+.++ ++.++...-. . +++
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVe-----------rLE~e~l~s~V~E~vet~dv--~~d~i~Kimn-------k-~Re 90 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVE-----------RLENEMLRSHVCEDVETNDV--IYDKIVKIMN-------K-MRE 90 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHH-----------HHHHHhhhhhhhhHHHHHHH--HHHHHHHHHH-------H-Hhh
Confidence 3455555555555555554444433 5677765 566667777655 4444433211 1 122
Q ss_pred HHH-HHhhhcchhHHHHHHHHH
Q 039268 149 LAK-LQADNQQIPLLRAEIDGL 169 (276)
Q Consensus 149 L~r-~~ad~qqipal~aEie~l 169 (276)
+.- .+-+...=|.|-|-||+|
T Consensus 91 ~vlfq~d~~~ld~~lLARve~L 112 (420)
T PF07407_consen 91 LVLFQRDDLKLDSVLLARVETL 112 (420)
T ss_pred hhhhccccccccHHHHHHHHHH
Confidence 221 223344556666666665
No 355
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=65.98 E-value=97 Score=27.50 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=69.5
Q ss_pred hhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------HHHHHHHHHHhhhhh
Q 039268 37 PALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAE---------QEVHVRDLVEKGLKL 107 (276)
Q Consensus 37 P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae---------~e~q~R~l~ek~~Km 107 (276)
...++.++..++..+.+|..+-.++..++.+|-.--...-..+..+-.-+..-... .-..+..+......|
T Consensus 4 f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l 83 (216)
T cd07599 4 FEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEEL 83 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999776554433333333332111111000 001111122222222
Q ss_pred hhhh---------hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 108 EADL---------RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK 151 (276)
Q Consensus 108 EAel---------ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r 151 (276)
..++ +...+++ ++...-.+++++..-|..-..+...+...+.+
T Consensus 84 ~~~~~~~l~~i~~~V~~P~~-~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k 135 (216)
T cd07599 84 KKELLEELEFFEERVILPAK-ELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2211 3346666 77778889999999999888888888888877
No 356
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.93 E-value=1.5e+02 Score=30.34 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 90 RAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 90 ~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
+.+.|...-.+=.+.+.-|. ..+.+.+++..+++|...+.+.-+++...++
T Consensus 8 ~s~~dqr~~~~~~~laq~~k---~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~ 58 (459)
T KOG0288|consen 8 KSENDQRLIDLNTELAQCEK---AQSRLSAQLVILRAESRAIKAKLQEKELELN 58 (459)
T ss_pred hhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444 5555666666666666655444444333333
No 357
>PLN02678 seryl-tRNA synthetase
Probab=65.43 E-value=44 Score=33.88 Aligned_cols=28 Identities=36% Similarity=0.324 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
+..+..++..++..|.+.|..++.++..
T Consensus 38 ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666644
No 358
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=65.12 E-value=1.1e+02 Score=27.93 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=36.7
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQ-KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q-~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|-.+++.+|...+..+.|......+.+ +|..++++-..-+.....+-.+...+. +...+.|++ +.+..++..++
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i--~~~A~~ea~---~~~~~a~~~ie 111 (246)
T TIGR03321 37 REKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRL--LDEAREEAD---EIREKWQEALR 111 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHH
Confidence 333445555555555555555554443 233344444444444444433333222 222233333 23445666777
Q ss_pred hHHhhhH
Q 039268 182 YEKKANI 188 (276)
Q Consensus 182 yEKk~~~ 188 (276)
.|++.-.
T Consensus 112 ~E~~~a~ 118 (246)
T TIGR03321 112 REQAALS 118 (246)
T ss_pred HHHHHHH
Confidence 7766554
No 359
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=65.06 E-value=2.1 Score=43.48 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
..|.+|-|.|-.++.|+--..........+.. +.+.-...+....|+.+||.-||.|...=.=|
T Consensus 391 ~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PL---- 454 (539)
T PF10243_consen 391 EEHGGLVQKILETKKELEKSANSEEKEEKEQS------------LAASKKERESVEKEIEKLRESIQTLCRSANPL---- 454 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCHHHHHHHHHHHHHhhccccccccccccc------------chhhhccchhHHHHHHHHHHHHHHHHHhcchH----
Confidence 45666666666666666554433321111111 12222334445556666666555544332222
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 143 QTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIEL----MEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 143 q~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~----~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-+=|-=++-| |-+|..||+--+.|....-.++..|++...+- ..|+..+|.++.-+--.|-.+||-|.+-
T Consensus 455 ---gk~~d~iqED---id~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~N 528 (539)
T PF10243_consen 455 ---GKLMDYIQED---IDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILKN 528 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---HHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222222 23344444444444445555556666555443 3456666666666666666666666554
Q ss_pred cC
Q 039268 219 DG 220 (276)
Q Consensus 219 e~ 220 (276)
+.
T Consensus 529 e~ 530 (539)
T PF10243_consen 529 EE 530 (539)
T ss_dssp --
T ss_pred HH
Confidence 43
No 360
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=65.01 E-value=29 Score=33.36 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=30.5
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHhhh
Q 039268 112 RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN----QQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 112 ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~----qqipal~aEie~lrqElqr~Raa~ 180 (276)
+.+.|++.++.++..++......-++...+++.+...|+.++.+. ++.-.|..+++....-|.|+..-+
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 344556655555555444444443344444444443333333322 112233344555555555554433
No 361
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.01 E-value=47 Score=28.99 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~ 153 (276)
.+..+++.+.+||.+.+
T Consensus 158 ~~~~ei~~lk~el~~~~ 174 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKE 174 (192)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34444555555554444
No 362
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=64.87 E-value=1e+02 Score=27.45 Aligned_cols=9 Identities=33% Similarity=0.261 Sum_probs=3.9
Q ss_pred hhHHHHHHH
Q 039268 39 LLEEELEIQ 47 (276)
Q Consensus 39 ~LEe~l~~Q 47 (276)
-|.+.|..+
T Consensus 37 ~L~e~Ld~~ 45 (189)
T PF10211_consen 37 QLQEWLDKM 45 (189)
T ss_pred HHHHHHHHH
Confidence 344444433
No 363
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=64.50 E-value=47 Score=27.39 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=5.9
Q ss_pred HHHHHhhhhhhh
Q 039268 98 RDLVEKGLKLEA 109 (276)
Q Consensus 98 R~l~ek~~KmEA 109 (276)
++|+++...||.
T Consensus 4 ~~l~~~l~~le~ 15 (107)
T PF06156_consen 4 KELFDRLDQLEQ 15 (107)
T ss_pred HHHHHHHHHHHH
Confidence 344555555554
No 364
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.29 E-value=44 Score=24.33 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
-+..+.++...+..|...-..|..++..+.+++..+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555555444443
No 365
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=64.21 E-value=1.8e+02 Score=31.48 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 039268 161 LLRAEIDGLHQELM 174 (276)
Q Consensus 161 al~aEie~lrqElq 174 (276)
..+.|++.+-.|+.
T Consensus 581 ~a~~~~~~~i~~lk 594 (782)
T PRK00409 581 EAKKEADEIIKELR 594 (782)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 366
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=64.06 E-value=96 Score=32.15 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039268 193 QRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 193 q~qaMEknlisMarEvEKLRaE 214 (276)
+.|.-||-|....-.+|||+--
T Consensus 355 krqnaekql~~Ake~~eklkKK 376 (575)
T KOG4403|consen 355 KRQNAEKQLKEAKEMAEKLKKK 376 (575)
T ss_pred HhhhHHHHHHHHHHHHHHHHHh
Confidence 5677788777766668888753
No 367
>PRK15396 murein lipoprotein; Provisional
Probab=63.27 E-value=33 Score=27.07 Aligned_cols=15 Identities=7% Similarity=0.222 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhhh
Q 039268 166 IDGLHQELMHARAAV 180 (276)
Q Consensus 166 ie~lrqElqr~Raa~ 180 (276)
++..+.|-.|+..-|
T Consensus 55 ~~~a~~eA~raN~Rl 69 (78)
T PRK15396 55 VQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 368
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=63.15 E-value=99 Score=26.65 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=42.4
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQ-KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q-~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|-.++..+|...+..+.+...+..+.+ +|..++++-..-++....+-.+...+. +-..+.|+ .+.+..++..|+
T Consensus 51 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~e~---~~~~~~a~~~i~ 125 (174)
T PRK07352 51 RREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEI--EKQAIEDM---ARLKQTAAADLS 125 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHH
Confidence 334455555555555555555555553 344555555555555555544443333 22333333 345667788888
Q ss_pred hHHhhhHH
Q 039268 182 YEKKANIE 189 (276)
Q Consensus 182 yEKk~~~e 189 (276)
.|++.-..
T Consensus 126 ~e~~~a~~ 133 (174)
T PRK07352 126 AEQERVIA 133 (174)
T ss_pred HHHHHHHH
Confidence 88755443
No 369
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=63.12 E-value=2.4 Score=45.74 Aligned_cols=155 Identities=22% Similarity=0.299 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAE---QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLR 135 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae---~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~R 135 (276)
..|--+.--|..|+..+..+|....+.+..+... -|.++-++-.+...+-+ ..+.+..|...+.+++-+|...-
T Consensus 345 ~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~---e~d~~q~e~r~~~te~~~Lk~~l 421 (859)
T PF01576_consen 345 SSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQA---ERDAAQREARELETELFKLKNEL 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHhhh
Confidence 3444455556666666666666655544433221 11222222222222222 33455555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 136 NELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKA----NIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~----~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
.++..++..+.++...++.++..+-.-..+...-.++|.+.+..+|-|+.- --|.-..+++.|.....+--+++.+
T Consensus 422 ee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 422 EELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655555555444333333333334555555554444431 1223334455555555555555555
Q ss_pred HHHhh
Q 039268 212 RAELT 216 (276)
Q Consensus 212 RaEla 216 (276)
|+++.
T Consensus 502 r~e~e 506 (859)
T PF01576_consen 502 RQEIE 506 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 370
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=62.74 E-value=1.8e+02 Score=29.59 Aligned_cols=42 Identities=21% Similarity=0.397 Sum_probs=25.6
Q ss_pred CChhhhHHHHHH----HHHHHhhhccccccchhhHHHHHHHHHHHH
Q 039268 35 PHPALLEEELEI----QHAEIQRLLGDNRRLVEDRMAMQRELAAAK 76 (276)
Q Consensus 35 p~P~~LEe~l~~----Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq 76 (276)
.-|.++..|.+. -...|.+...+|-+|-.+-..+.|.|.+.+
T Consensus 274 ~lP~~m~tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~q 319 (442)
T PF06637_consen 274 HLPKIMTTKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQ 319 (442)
T ss_pred hchHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345666665543 344577777777777666666666666655
No 371
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=62.52 E-value=4.7 Score=39.38 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
-.|+++..+||. +.+.|..-+-.+...+-.|...-+.|+..+..++-+|.-+..++
T Consensus 31 s~I~eRLsaLEs---sv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV 86 (326)
T PF04582_consen 31 SPIRERLSALES---SVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTV 86 (326)
T ss_dssp -----------------------------------------------------------
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667776 55555555555555555555555555555555555544444443
No 372
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=62.46 E-value=1.2e+02 Score=33.47 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|.+.--.|..|++...+.+.-++.- -..|...||+.+.|-+|.+..|.
T Consensus 432 LqSlN~~Lq~ql~es~k~~e~lq~k---neellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 432 LQSLNMSLQNQLQESLKSQELLQSK---NEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555444443333322 24566677888888888888764
No 373
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=62.46 E-value=64 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
.-|.||.||+.....|........
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888877777665444
No 374
>PHA02414 hypothetical protein
Probab=62.09 E-value=26 Score=29.22 Aligned_cols=73 Identities=27% Similarity=0.391 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----chhHHHHHH
Q 039268 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ-----QIPLLRAEI 166 (276)
Q Consensus 92 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q-----qipal~aEi 166 (276)
|.|-+|-.|+.++..||.-++..+-.+ +.+-..|..+-.||..=|-++.++++ .+++.| ||.-|..-|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~------kgdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTD------KGDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCcccc------CCchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHH
Confidence 356788899999999999999988776 55777777777788888888888876 344444 555566666
Q ss_pred HHHHH
Q 039268 167 DGLHQ 171 (276)
Q Consensus 167 e~lrq 171 (276)
++|++
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 66554
No 375
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.05 E-value=2.3e+02 Score=30.59 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 039268 204 MAREVEKLRA 213 (276)
Q Consensus 204 MarEvEKLRa 213 (276)
..+++++++.
T Consensus 601 ~~~~~~~~~~ 610 (771)
T TIGR01069 601 SIEDLVKLKE 610 (771)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 376
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.05 E-value=1.1e+02 Score=26.87 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=3.7
Q ss_pred ChhhhHH
Q 039268 36 HPALLEE 42 (276)
Q Consensus 36 ~P~~LEe 42 (276)
...+||.
T Consensus 31 VV~vLE~ 37 (158)
T PF09744_consen 31 VVRVLEL 37 (158)
T ss_pred HHHHHHH
Confidence 4456664
No 377
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=61.97 E-value=68 Score=31.61 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhccCCC
Q 039268 205 AREVEKLRAELTNFDGRP 222 (276)
Q Consensus 205 arEvEKLRaElanae~r~ 222 (276)
.-.+++-+-+|+++.=|+
T Consensus 196 ~a~~~~A~l~L~~T~IrA 213 (352)
T COG1566 196 EAALDQAKLDLERTVIRA 213 (352)
T ss_pred HHHHHHHHHHhhCCEEEC
Confidence 334555556667766665
No 378
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=61.70 E-value=73 Score=24.59 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHh
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKK 185 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 185 (276)
|...-..|..+|.+...+. .-.|...++.+.+.+..++.+|+|=..
T Consensus 55 L~~~e~~ll~~l~~~~~~~--~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 55 LNKRKKQLLEDLEEQKENK--LKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333 445556677777777777777776543
No 379
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=61.60 E-value=1.5e+02 Score=28.24 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchh-hHHHHHHHHHHHHHHH----HHHHHH
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEP-LKKEAVQLRAEVQKLN----NLRNEL 138 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~-lk~El~q~raE~q~L~----~~RqeL 138 (276)
+..-|++-..-...-...|...|.+...-.-..+|.|+++--++-.=+-..+. -+..++++++|++... ..--.|
T Consensus 7 sl~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~L 86 (258)
T PF15397_consen 7 SLQELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKL 86 (258)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34445666666666677777888888777889999999988777663333321 2345777777666532 222334
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 039268 139 NGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~ 156 (276)
..+|+.+...+.+.+.|+
T Consensus 87 q~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 87 QQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 380
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.59 E-value=95 Score=26.83 Aligned_cols=32 Identities=3% Similarity=-0.072 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
+++++.++...+....+.-.++.+++..+..+
T Consensus 24 l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~ 55 (135)
T TIGR03495 24 ARADLERANRVLKAQQAELASKANQLIVLLAL 55 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444444444333
No 381
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=61.51 E-value=2e+02 Score=29.48 Aligned_cols=99 Identities=19% Similarity=0.257 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-----hcchhHHHHHH-HHHHHHHHHHHhhhhhHHhhhHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQK----DLAKLQAD-----NQQIPLLRAEI-DGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~----eL~r~~ad-----~qqipal~aEi-e~lrqElqr~Raa~EyEKk~~~e 189 (276)
.+.+.+..++-|....+.|+.+.+.+.. +..+...| ++++-.+..++ +++++- +..-+.-+-+.+.+
T Consensus 85 ~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~---l~~~~~~s~~~~~~ 161 (448)
T COG1322 85 QLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQ---LEQRIHESAEERST 161 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3344444444444444444444444433 33333333 33444444443 444432 34445667778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 190 LMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 190 ~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
++++...+-.++-+|++|+-.|-+=|.+.-.|
T Consensus 162 ~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktr 193 (448)
T COG1322 162 LLEEIDRLLGEIQQLAQEAGNLTAALKGNKTR 193 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999995555
No 382
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=61.47 E-value=1.3e+02 Score=27.47 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=25.2
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 53 RLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRA 91 (276)
Q Consensus 53 rLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~a 91 (276)
.++.....+|..|..+-+.|...-+||..+...+...+-
T Consensus 69 ~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK 107 (234)
T cd07652 69 SSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRK 107 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888888888886666666655555444333
No 383
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=61.39 E-value=1.2e+02 Score=27.19 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=18.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMN-LVIGEIRAEQEVHVRDLV 101 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~-~~~~~i~ae~e~q~R~l~ 101 (276)
+.+.+..|.+++..++..+..+. .+-.+++.-.|-=-|+.+
T Consensus 50 ~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al 91 (219)
T TIGR02977 50 TIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL 91 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33444445555555555555444 233334444443333333
No 384
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=61.37 E-value=56 Score=27.37 Aligned_cols=59 Identities=24% Similarity=0.279 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r~ 222 (276)
.+.+.+.+++.....+|+-.++.-..+-+--..-.|.|-.--.|+++||+.|++-.+|-
T Consensus 7 ~~~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL 65 (125)
T PF03245_consen 7 RQRDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRL 65 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceE
Confidence 44455555555555555555554445555555667788888899999999999999985
No 385
>PF15294 Leu_zip: Leucine zipper
Probab=61.36 E-value=1.6e+02 Score=28.42 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=16.3
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 181 DYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 181 EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
|.|||... .-+-.-|-+=|..=.-+|--||-.|.
T Consensus 244 eLekKfqq--T~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 244 ELEKKFQQ--TAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred hHHHHhCc--cHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 45555542 33444443334444455666665553
No 386
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.35 E-value=2.1e+02 Score=30.35 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=26.5
Q ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 152 LQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLR 212 (276)
Q Consensus 152 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLR 212 (276)
...+.-.+-.|++.+..|++++...++. +.+.-..|+.+..+.||++..+
T Consensus 334 ~~~~hP~v~~l~~~~~~L~~~~~~l~~~-----------~~~~p~~e~~~~~L~R~~~~~~ 383 (726)
T PRK09841 334 YKKDHPTYRALLEKRQTLEQERKRLNKR-----------VSAMPSTQQEVLRLSRDVEAGR 383 (726)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHH-----------HHhccHHHHHHHHHHHHHHHHH
Confidence 4445555556666666666665554432 3344444555555555544433
No 387
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=60.59 E-value=1.4e+02 Score=27.61 Aligned_cols=98 Identities=28% Similarity=0.329 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA-TEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra-~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
--+|++++.+.+.........+..++. .--.+-.+..+++..... ...++....-+.+++.+++..-+.++..|.
T Consensus 70 le~Le~el~~l~~~~~~~~~~~~~lq~----~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~ 145 (256)
T PF14932_consen 70 LEALEEELEALQEYKELYEQLRNKLQQ----LDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVS 145 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555554333333333332222 222244455566653322 233444444456677889999999999999
Q ss_pred HHHHHHHHHHhh-hcchhHHHHHH
Q 039268 144 TLQKDLAKLQAD-NQQIPLLRAEI 166 (276)
Q Consensus 144 ~l~~eL~r~~ad-~qqipal~aEi 166 (276)
.++.++...... -+..|.+-.-+
T Consensus 146 ~l~~~~~~~~~~~~~~~~~flsq~ 169 (256)
T PF14932_consen 146 KLASELAHAHSGQQQNPPVFLSQM 169 (256)
T ss_pred HHHHHHHHhcccccCCCCchhhhC
Confidence 999999887664 45677766655
No 388
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=60.39 E-value=35 Score=32.11 Aligned_cols=51 Identities=24% Similarity=0.399 Sum_probs=29.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
..+++|.-..+.+... +++.-+|..|.+|... |+.+|+.|++|+..+|..|
T Consensus 202 NN~A~~kSR~~~k~~~-------~e~~~r~~~leken~~----------lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 202 NNEAVRKSRDKRKQKE-------DEMAHRVAELEKENEA----------LRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Confidence 3344554444444322 4455556666666443 3477778888888777765
No 389
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=60.22 E-value=1.3e+02 Score=30.12 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 139 NGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
..-.+.+..||.|++...--+..-+- ...|.|-..++|...|.=+|.-.+.-+|.+
T Consensus 259 ~estdsf~~eLKr~c~~kvevd~eK~-~~~i~q~eeq~rkr~eE~~k~a~~~A~~~a 314 (410)
T KOG4715|consen 259 LESTDSFNNELKRLCGLKVEVDMEKM-AAEIAQAEEQARKRQEEREKEAAEQAEQSA 314 (410)
T ss_pred HhccHHHHHHHHHhcCCcccccHHHH-HHHHHHHHHHHHHhHhHHHhhHhhhhhhhh
Confidence 33356777788888765421111111 123445556667776654444445555544
No 390
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=60.14 E-value=86 Score=24.95 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDLA 150 (276)
Q Consensus 137 eL~~qvq~l~~eL~ 150 (276)
.|..++..+..++.
T Consensus 67 ~Le~~~e~le~~i~ 80 (105)
T cd00632 67 ELKERLETIELRIK 80 (105)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444444433
No 391
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=59.95 E-value=2.1e+02 Score=34.77 Aligned_cols=129 Identities=22% Similarity=0.298 Sum_probs=68.8
Q ss_pred hhccccccch---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHH------
Q 039268 53 RLLGDNRRLV---EDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQ------ 123 (276)
Q Consensus 53 rLl~dNqRLa---atHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q------ 123 (276)
+++.+-+++. ++-++|+..|+..+.+|.-+.+-+.++.-|-..=..+..+.+..+.+.+.....+=+.|.+
T Consensus 971 ~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~aie~kv~~L~~ea~~v~~~~Paea~~i~~r~~el~~~w~~l~~~~~~~~ 1050 (2473)
T KOG0517|consen 971 RVLESTDRLGNDLAGVMALQRRLQGLERDLAAIEAKVAALEKEANKVEEEHPAEAQAINARIAELQALWEQLQQRLQERE 1050 (2473)
T ss_pred HHHHhccccCcchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555 4567888888888888888877777777666655555555555555544333333322222
Q ss_pred -HHHHHHHHHHHHHHHH--------HHHHHHHHH----HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 124 -LRAEVQKLNNLRNELN--------GKVQTLQKD----LAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 124 -~raE~q~L~~~RqeL~--------~qvq~l~~e----L~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
.-.|++.|..+-++|- +|.+....| |.-+..=++|-.+|+.||++-..+++++++.=+
T Consensus 1051 ~~l~ea~~lQ~Fl~dld~f~~Wl~~tq~~~~see~p~~l~eAe~LL~qH~~l~eEI~~~~e~y~~~~~~ge 1121 (2473)
T KOG0517|consen 1051 ERLEEAGGLQRFLRDLDDFQAWLESTQTQVASEEGPVDLAEAEQLLKQHAALREEIDGYQEDYQRMRALGE 1121 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222333333333321 111111111 444444455556666666666666666666543
No 392
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=59.84 E-value=1.4e+02 Score=27.44 Aligned_cols=145 Identities=10% Similarity=0.126 Sum_probs=71.9
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 130 (276)
...++.....+|..|..+-.+|... =+. -+..+..+.+.......+-..++..+ +..+..|+.+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~--i~~----~l~~l~~~~~~~rK~~~~~~~kl~~e----------l~~~~~el~k 130 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESG--TLD----KLTLLIKDKRKAKKAYQEERQQIDEQ----------YKKLTDEVEK 130 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hhH----HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555556666665555554331 112 22333444444455555555565553 3333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhh-------------------HHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKAN-------------------IELM 191 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~-------------------~e~~ 191 (276)
.-..=+.+...+....+-+.++-.+. +.-++++|..++=++..-..+.-=|+.| .+++
T Consensus 131 ~Kk~Y~~~~~e~e~Ar~k~e~a~~~~---~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll 207 (237)
T cd07657 131 LKSEYQKLLEDYKAAKSKFEEAVVKG---GRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLL 207 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33333333344444444444443332 1224455444444433333332222222 6889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaE 214 (276)
..+|.|+.++|.+.+|+=.-=++
T Consensus 208 ~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 208 NSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986443333
No 393
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=59.75 E-value=56 Score=30.29 Aligned_cols=33 Identities=36% Similarity=0.423 Sum_probs=21.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
.-+.|..|+.|++.|-|+|...||-|.++-+..
T Consensus 46 ~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~ 78 (228)
T PRK06800 46 QQKSLHKELNQLRQEQQKLERERQQLLADREQF 78 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566677777777777777776666655444
No 394
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=59.74 E-value=94 Score=27.41 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 039268 164 AEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 164 aEie~lrqElqr~Raa~Ey 182 (276)
++|+.|+.+|...++.|+.
T Consensus 163 g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 163 GDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp --HHHHHHHHHHHTGGG-G
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 5566666666666666653
No 395
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=59.66 E-value=1.1e+02 Score=26.21 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=49.3
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQK-LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q~-L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|..++..+|...+..+.|..++..+.++ |..++.+-..-+...+.+-.+...+. +...+.|.+. -+..++..|+
T Consensus 42 R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~--~~~A~~ea~~---~~~~A~~~I~ 116 (167)
T PRK14475 42 YAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEA--KEKLEEQIKR---RAEMAERKIA 116 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHHH
Confidence 4445556666666666666666666543 44455555555555555543333322 2222334433 3457788888
Q ss_pred hHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 182 YEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 182 yEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
.|++.-.. .+.+.++.+|-+
T Consensus 117 ~e~~~a~~------el~~e~~~lAv~ 136 (167)
T PRK14475 117 QAEAQAAA------DVKAAAVDLAAQ 136 (167)
T ss_pred HHHHHHHH------HHHHHHHHHHHH
Confidence 87765433 233345555555
No 396
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=59.51 E-value=1.5e+02 Score=27.62 Aligned_cols=10 Identities=10% Similarity=0.136 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 039268 120 EAVQLRAEVQ 129 (276)
Q Consensus 120 El~q~raE~q 129 (276)
|+.+++.+.+
T Consensus 146 ~~~~~~~~~~ 155 (331)
T PRK03598 146 DLENARSSRD 155 (331)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 397
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.36 E-value=2.5e+02 Score=30.00 Aligned_cols=138 Identities=20% Similarity=0.186 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
+++=|..++..++.+...-..+..|.-.-.-.|...+..++.. +......+...+.-|+=.|.+.++-|..++|.|.+
T Consensus 302 v~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~--~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~ 379 (632)
T PF14817_consen 302 VHQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERR--LSGSSEREALALELEVAGLKASLNALRSECQRLKE 379 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666665555555554443333333333333333 22223333333333444555555555555555444
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 148 DLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
....-+-.. .++..-.|+|++. +..-.+.-+|.++..|+=-+.+..+++..+|+-+.-.+
T Consensus 380 ~~~~r~e~~-------~~Lq~K~q~I~~f-------rqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~ 439 (632)
T PF14817_consen 380 AAAERQEAL-------RSLQAKWQRILDF-------RQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQR 439 (632)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhc
Confidence 322222222 3333333333333 33445667777777777777777777777777665544
No 398
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=59.31 E-value=65 Score=31.97 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElana 218 (276)
..+.+.+-.+..++.+|..++.+.
T Consensus 385 ~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 385 KELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444555555555554
No 399
>COG5293 Predicted ATPase [General function prediction only]
Probab=59.15 E-value=2.4e+02 Score=29.67 Aligned_cols=140 Identities=16% Similarity=0.170 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 039268 62 VEDRMAMQRELAA-----AKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRN 136 (276)
Q Consensus 62 aatHvaLrqeLaa-----aq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rq 136 (276)
.+..+.|=.++.. .+++..++-+....+-+++-- =|=+++.++++||..+++-++++-.-|+|.-.....+-
T Consensus 300 pd~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~---yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g 376 (591)
T COG5293 300 PDEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHD---YLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRG 376 (591)
T ss_pred hHHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555566555543 345555555555555444432 35578889999999999999998888887655544442
Q ss_pred ------HHHHHHHHHHHH---HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHH
Q 039268 137 ------ELNGKVQTLQKD---LAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSM 204 (276)
Q Consensus 137 ------eL~~qvq~l~~e---L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisM 204 (276)
-|....-...-| +..-..++.|.-++..=|-.+++|+-+.-..+--|-.-...+.+...-.=+||+..
T Consensus 377 ~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~ 453 (591)
T COG5293 377 VFEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIRE 453 (591)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333333 33445678888899999999999998887777667666666777777776666544
No 400
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=59.11 E-value=1.6e+02 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhhcc
Q 039268 202 VSMAREVEKLRAELTNFD 219 (276)
Q Consensus 202 isMarEvEKLRaElanae 219 (276)
--+-+||--||++|+.+.
T Consensus 177 ~kId~Ev~~lk~qi~s~K 194 (220)
T KOG3156|consen 177 TKIDQEVTNLKTQIESVK 194 (220)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345578888888887653
No 401
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=59.03 E-value=1.3e+02 Score=29.30 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=7.6
Q ss_pred HHHHHHHhhhccCCC
Q 039268 208 VEKLRAELTNFDGRP 222 (276)
Q Consensus 208 vEKLRaElanae~r~ 222 (276)
++.-+..|.++.=++
T Consensus 206 l~~a~~~L~~t~I~A 220 (390)
T PRK15136 206 VRNAWLALQRTKIVS 220 (390)
T ss_pred HHHHHHHHhCCEEEC
Confidence 444444555555554
No 402
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=58.94 E-value=89 Score=29.02 Aligned_cols=12 Identities=42% Similarity=0.684 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 039268 70 RELAAAKEELHR 81 (276)
Q Consensus 70 qeLaaaq~Elqr 81 (276)
++|.+.|.+|+.
T Consensus 41 ~~L~~~Q~~L~~ 52 (228)
T PRK06800 41 EELLAQQKSLHK 52 (228)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
No 403
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=58.69 E-value=1.4e+02 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 169 LHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
..+.+..+++.|+.|+..-.. .+.+.++.+|-+
T Consensus 142 ae~ii~~A~~~Ie~Ek~~a~~------~Lk~ei~~lAv~ 174 (205)
T PRK06231 142 ANLIIFQARQEIEKERRELKE------QLQKESVELAML 174 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 345667788888888776533 334455666655
No 404
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=58.64 E-value=1.2e+02 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 169 LHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
..+.+..++..|+.||+.-... ..+..+.+|-+
T Consensus 121 a~~~~~~A~~~I~~ek~~a~~~------l~~~i~~lA~~ 153 (184)
T PRK13455 121 IARRLAAAEDQIASAEAAAVKA------VRDRAVSVAVA 153 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Confidence 4455667778888877655433 33335555555
No 405
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=58.05 E-value=7.8 Score=44.14 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCCCCChhh-hHHHHHHH
Q 039268 31 PQPPPHPAL-LEEELEIQ 47 (276)
Q Consensus 31 ~~ppp~P~~-LEe~l~~Q 47 (276)
|.|||+|.+ ++.|-..|
T Consensus 24 pppPppPg~~~~~r~~k~ 41 (2365)
T COG5178 24 PPPPPPPGVNVKKRSRKQ 41 (2365)
T ss_pred CCCccCCCcchhhhcccc
Confidence 334666666 66655444
No 406
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.99 E-value=84 Score=24.13 Aligned_cols=8 Identities=13% Similarity=0.385 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 039268 192 EQRQAMEK 199 (276)
Q Consensus 192 Eq~qaMEk 199 (276)
++++.+++
T Consensus 90 ~~l~~~~~ 97 (106)
T PF01920_consen 90 KKLKELKK 97 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 407
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=57.96 E-value=92 Score=24.57 Aligned_cols=8 Identities=38% Similarity=0.638 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q 039268 138 LNGKVQTL 145 (276)
Q Consensus 138 L~~qvq~l 145 (276)
|..++..+
T Consensus 72 l~~e~~~l 79 (108)
T PF02403_consen 72 LKAEVKEL 79 (108)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 408
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=57.85 E-value=1.1e+02 Score=25.39 Aligned_cols=41 Identities=24% Similarity=0.231 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
|..|..-|....+.+..++..++.-+..-.+-.-..++|||
T Consensus 73 i~~L~~~I~~q~~~v~~~~~~ve~~r~~~~~a~~~~k~lEk 113 (147)
T PRK05689 73 LQQLEKAITQQRQQLTQWTQKVDNARKYWQEKKQRLEALET 113 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544444444444444443
No 409
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=57.57 E-value=96 Score=26.73 Aligned_cols=80 Identities=25% Similarity=0.341 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHhhhcc----hhHHHHHHHHHHHHHHHHHhhhhhHH--------hhhHHHHHHHHHH
Q 039268 132 NNLRNELNGKV--QTLQKDLAKLQADNQQ----IPLLRAEIDGLHQELMHARAAVDYEK--------KANIELMEQRQAM 197 (276)
Q Consensus 132 ~~~RqeL~~qv--q~l~~eL~r~~ad~qq----ipal~aEie~lrqElqr~Raa~EyEK--------k~~~e~~Eq~qaM 197 (276)
+..|-+|..+| +....++..+..=... |-.++.+++.+..||+.+|..|=-=+ ..=.+..||=+-+
T Consensus 29 ~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~I 108 (126)
T PF07028_consen 29 TCYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKFI 108 (126)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHHH
Confidence 45667777776 2222222222222222 45556666677777777666653222 2235567788888
Q ss_pred HHHHHHHHHHHHHH
Q 039268 198 EKNLVSMAREVEKL 211 (276)
Q Consensus 198 EknlisMarEvEKL 211 (276)
||--..+..|+.|.
T Consensus 109 EkQte~LteEL~kk 122 (126)
T PF07028_consen 109 EKQTEALTEELTKK 122 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777777776553
No 410
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=57.54 E-value=57 Score=29.35 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=28.7
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAE 127 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE 127 (276)
..+...--..| -++|||..+- .||.+.....+.|-+.+|.+|-.++.+||.=.+....||.....+..|
T Consensus 91 iv~~tsancs~-QVqqeL~~tf---~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 91 IVSFTSANCSH-QVQQELSSTF---ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp --------------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443333444 2345555443 456666666666666667666666666666444444444444444443
No 411
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=57.53 E-value=1.4e+02 Score=26.62 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 134 LRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 134 ~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+|.-|...+..+.++++.+..-+ -+..++|.+.+++|-+.++-|
T Consensus 80 yr~vl~~~~~~aE~~~aaa~~al---~~~~~~laa~~r~iaRn~a~i 123 (158)
T TIGR02559 80 YRDVLEAHLGAAEQAEAAARAAL---QALAAALAAKKREIARLDAQI 123 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444322 223344444444444444433
No 412
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=57.36 E-value=1.1e+02 Score=25.43 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhh
Q 039268 165 EIDGLHQELMHARAA 179 (276)
Q Consensus 165 Eie~lrqElqr~Raa 179 (276)
+++..-.++...|..
T Consensus 125 d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 125 DVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 344444444444443
No 413
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.31 E-value=42 Score=25.72 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 121 AVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
|.++..-|..|....++|..+=..+.+++.... +|-..|..=..-||+-|| ..+.+.++||.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~----------~ER~~L~ekne~Ar~rvE-------amI~RLk~leq 63 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWR----------EERAQLLEKNEQARQKVE-------AMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH-------HHHHhhhhhcc
Confidence 344444455555555555555444444433333 444555555555555544 34555666654
No 414
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.31 E-value=3.4e+02 Score=30.88 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 160 PLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 160 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
-.|+..++.+..+++-+-.-+++.++.+.++.+=
T Consensus 535 ~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~ 568 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEV 568 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccHHH
Confidence 3455666666777766666666666655444333
No 415
>PRK09343 prefoldin subunit beta; Provisional
Probab=57.27 E-value=1.1e+02 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaElana 218 (276)
...+.+||+.-.+-..+.+++..|..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666544
No 416
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=57.18 E-value=1.7e+02 Score=27.44 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
++|| |..-.-.=++.+...|..+..++.....-|.+.++|.. .+.+||+.+...+..+-++
T Consensus 139 ~~Lk-eyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr~---~~~~ev~~~e~kve~a~~~ 199 (243)
T cd07666 139 PVIH-EYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADRD---LLKEEIEKLEDKVECANNA 199 (243)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444 55555555666677777777777777777877777754 4445666555555554333
No 417
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=57.09 E-value=12 Score=40.95 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHhhhhhHHhh
Q 039268 166 IDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 166 ie~lrqElqr~Raa~EyEKk~ 186 (276)
+++++=++.-+-+|||.-+|.
T Consensus 794 vnniKP~i~avt~ACEE~rkS 814 (1102)
T KOG1924|consen 794 VNNIKPDIVAVTAACEELRKS 814 (1102)
T ss_pred HhhcChHHHHHHHHHHHHHhh
Confidence 355666677777777776654
No 418
>PLN02320 seryl-tRNA synthetase
Probab=56.95 E-value=61 Score=33.53 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=17.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
.-.+..+..++..++..|.+.|..++.++.
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~ 124 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMK 124 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556666666666666666653
No 419
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.64 E-value=30 Score=35.55 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
|.++|..++.|++.|...++++..+++.+..|
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE 112 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQD 112 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45566666666666666666665555544443
No 420
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=56.43 E-value=1.7e+02 Score=27.06 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhccCCC
Q 039268 207 EVEKLRAELTNFDGRP 222 (276)
Q Consensus 207 EvEKLRaElanae~r~ 222 (276)
++++.+..+.+..-++
T Consensus 194 ~l~~a~~~l~~~~I~A 209 (334)
T TIGR00998 194 RLKTAWLALKRTVIRA 209 (334)
T ss_pred HHHHHHHHhhCcEEEc
Confidence 3455555555555554
No 421
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=56.40 E-value=24 Score=32.05 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHhhhc
Q 039268 38 ALLEEELEIQHAEIQRLL 55 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl 55 (276)
.--|..+.....+++..+
T Consensus 48 t~~E~~~v~~~~~lr~~~ 65 (233)
T PF11705_consen 48 TEEERYLVALKRELRERM 65 (233)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 335666666666655544
No 422
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=56.32 E-value=1.6e+02 Score=30.49 Aligned_cols=17 Identities=6% Similarity=0.311 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039268 199 KNLVSMAREVEKLRAEL 215 (276)
Q Consensus 199 knlisMarEvEKLRaEl 215 (276)
..|-.+-.|+..|++.+
T Consensus 104 ~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 104 RRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33335555666666665
No 423
>PLN02678 seryl-tRNA synthetase
Probab=56.04 E-value=1.1e+02 Score=31.08 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
++.++-.+-.+|...-..|.++...+++++
T Consensus 34 ~il~ld~~~r~l~~~~e~lr~erN~~sk~I 63 (448)
T PLN02678 34 EVIALDKEWRQRQFELDSLRKEFNKLNKEV 63 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443
No 424
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.66 E-value=1.6e+02 Score=26.67 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 105 LKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD-NQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 105 ~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad-~qqipal~aEie~lrqElqr~Raa~E 181 (276)
..||+ ....+.++|..++.+|+.++..|+--...+..--+.|.+-..+ +.+.-.+...+..|++|+...|....
T Consensus 139 ~~Le~---~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~ 213 (221)
T PF05700_consen 139 EQLEA---MLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAA 213 (221)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666 4455777888888889999888876665554444444433332 34445566677777788777766543
No 425
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=55.46 E-value=2.6e+02 Score=29.00 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=27.4
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 85 VIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 85 ~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
+...+.-|+.+++--+=-+...+|. ....+|..+--+++-+.+|...+|-++.++..++
T Consensus 287 il~k~eReasle~Enlqmr~qqlee---entelRs~~arlksl~dklaee~qr~sd~LE~lr 345 (502)
T KOG0982|consen 287 ILIKKEREASLEKENLQMRDQQLEE---ENTELRSLIARLKSLADKLAEEDQRSSDLLEALR 345 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3333444444444444444444444 3344454555555555555555555555444443
No 426
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=55.38 E-value=65 Score=26.88 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 039268 164 AEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 164 aEie~lrqElqr~Raa~Ey 182 (276)
.|--.|+-|-+++|.-++.
T Consensus 36 EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 36 EENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555543
No 427
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.85 E-value=40 Score=23.82 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
+.||..-..+.+|-.+|....+.|.++|+.++..
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555443
No 428
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=54.53 E-value=1.2e+02 Score=25.80 Aligned_cols=74 Identities=26% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhh--hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----HHHHHHHH
Q 039268 96 HVRDLVEKGLKLEADL--RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP-----LLRAEIDG 168 (276)
Q Consensus 96 q~R~l~ek~~KmEAel--ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip-----al~aEie~ 168 (276)
+...+-.++.-++.-+ .....+.+....+..++..|...++.....+......+..++....++- .++.|+|.
T Consensus 9 ~~~~~~a~~~e~e~~~~~~~~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldD 88 (136)
T PF04871_consen 9 EEKQLAAKILELETKLKSQAESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDD 88 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred H
Q 039268 169 L 169 (276)
Q Consensus 169 l 169 (276)
|
T Consensus 89 L 89 (136)
T PF04871_consen 89 L 89 (136)
T ss_pred H
No 429
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=54.36 E-value=1.7e+02 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
.+-...-+.+...|.. |+.+ -....++.|.||.+=|...++
T Consensus 164 ~~Y~~~v~~~~~~~~~--~~~~-m~~~~~~~Q~lEe~Ri~~~k~ 204 (261)
T cd07648 164 DEYKALVEKYNNIRAD--FETK-MTDSCKRFQEIEESHLRQMKE 204 (261)
T ss_pred HHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666 3332 346778888888877777766
No 430
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=54.12 E-value=1.5e+02 Score=25.97 Aligned_cols=43 Identities=28% Similarity=0.364 Sum_probs=18.6
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQ-KLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q-~L~~~RqeL~~qvq~l~~e 148 (276)
+++.++...+..+.++.++..+.+ .|..+|+|-..-++...++
T Consensus 66 ~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~e 109 (181)
T PRK13454 66 TITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAE 109 (181)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443 2333444444444444444
No 431
>PF13166 AAA_13: AAA domain
Probab=53.48 E-value=2.7e+02 Score=28.71 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=46.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hh
Q 039268 83 NLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ--IP 160 (276)
Q Consensus 83 ~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq--ip 160 (276)
...+..+...-+.=...|..|...+-..+- .+.+...+..+...+..+.....+...+++.+.+++..+...+.. +.
T Consensus 328 ~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~-~~~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~ 406 (712)
T PF13166_consen 328 KSAIEALKEELEELKKALEKKIKNPSSPIE-LEEINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIA 406 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333444444444433222 234444555666666666666666666666666665555544422 23
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039268 161 LLRAEIDGLHQELMHAR 177 (276)
Q Consensus 161 al~aEie~lrqElqr~R 177 (276)
.+...++.+..++..+.
T Consensus 407 ~~~~~i~~~~~~~~~~~ 423 (712)
T PF13166_consen 407 KLKEDIEEYQKEIKELE 423 (712)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 432
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=53.12 E-value=87 Score=25.42 Aligned_cols=7 Identities=14% Similarity=0.287 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039268 120 EAVQLRA 126 (276)
Q Consensus 120 El~q~ra 126 (276)
++.+++.
T Consensus 66 dv~~L~l 72 (106)
T PF10805_consen 66 DVHDLQL 72 (106)
T ss_pred HHHHHHH
Confidence 3333333
No 433
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=53.10 E-value=3.2e+02 Score=29.34 Aligned_cols=133 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---HhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLV---EKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLR 135 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~---ek~~KmEAelra~e~lk~El~q~raE~q~L~~~R 135 (276)
..+...-..|.++|.-.+..+.++.......+.+++.--..+- +...+...=....+..+.++..++.+++.|...-
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~ 257 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLGNYADLRRNIKPLEGLESTIKKKIQALQQELEELKAEL 257 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH---hhhHHHHHHHHHHHHHH
Q 039268 136 NELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEK---KANIELMEQRQAMEKNL 201 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK---k~~~e~~Eq~qaMEknl 201 (276)
.+|..++..++++++... .++..+..+|-.++..+-.-+ ..+-.+.-+.+.+.-|+
T Consensus 258 ~~l~~~~~~~~~~~~~~~----------~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 258 KELNDQVSLLTREVQEAL----------KESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
No 434
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=53.07 E-value=63 Score=28.24 Aligned_cols=42 Identities=21% Similarity=0.341 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREV 208 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEv 208 (276)
..|+.|.+++|.-+||++- .+.+++.++|-.=++|-+++-.+
T Consensus 94 ~kVtSLea~lEkqqQeLkA----------dhS~lllhvk~~~~DLr~LsCQm 135 (138)
T PF03954_consen 94 DKVTSLEAKLEKQQQELKA----------DHSTLLLHVKQFPKDLRSLSCQM 135 (138)
T ss_pred hHcccHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456666677777777653 55677888888888877765443
No 435
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.05 E-value=1.4e+02 Score=29.86 Aligned_cols=30 Identities=27% Similarity=0.415 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
++..+..+..+|...-+.|..+...+++++
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i 58 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEI 58 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 436
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=52.69 E-value=1.4e+02 Score=26.86 Aligned_cols=61 Identities=13% Similarity=0.179 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 039268 141 KVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 141 qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~ 220 (276)
+++.+..++.|.+.-.++-..-..+++..+.++..+++. +-++..+++.++..+.+..-
T Consensus 79 ~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~---------------------l~~~~~~l~~~~~~~~~~~i 137 (322)
T TIGR01730 79 QLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQAD---------------------LEAAKASLASAQLNLRYTEI 137 (322)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHhhccCEE
Confidence 344444444444443333444455666666655544433 23344556777777777665
Q ss_pred CC
Q 039268 221 RP 222 (276)
Q Consensus 221 r~ 222 (276)
++
T Consensus 138 ~A 139 (322)
T TIGR01730 138 RA 139 (322)
T ss_pred EC
Confidence 54
No 437
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=52.52 E-value=62 Score=26.70 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHH
Q 039268 133 NLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 133 ~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 184 (276)
..=.+|..++..+..++..++.. |-.|..|-..|+-|.+++|.-+....
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~---~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQ---LQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445555555554444422 33444555666666677666654433
No 438
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=52.30 E-value=4.1e+02 Score=30.41 Aligned_cols=144 Identities=15% Similarity=0.232 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHH
Q 039268 62 VEDRMAMQRELAAAKEEL-----HRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRN 136 (276)
Q Consensus 62 aatHvaLrqeLaaaq~El-----qrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rq 136 (276)
+.-+..|+.+...+|-+. .++.+.|.+...|-..+--++-.-..+|+...+.....|.|....+-+++++-..-.
T Consensus 200 aeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~ 279 (1141)
T KOG0018|consen 200 AEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKIS 279 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666443 333344444333333222222222223333333444444444444444444333322
Q ss_pred HHHHHHHHHHHHHHHHHhhh----cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHH
Q 039268 137 ELNGKVQTLQKDLAKLQADN----QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAR 206 (276)
Q Consensus 137 eL~~qvq~l~~eL~r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMar 206 (276)
+...++-. ..+|-++.-+. ..+-...-.|++.+..+...+..|+-..|--.+.-.-.+.|||++-.+.+
T Consensus 280 ~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q 352 (1141)
T KOG0018|consen 280 EKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQ 352 (1141)
T ss_pred HHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222 22222222111 22233333444444444455555544444444444444445554444444
No 439
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=52.26 E-value=1.9e+02 Score=27.25 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhc--------hhh-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 039268 97 VRDLVEKGLKLEADLRAT--------EPL-------------KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL------ 149 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~--------e~l-------------k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL------ 149 (276)
.++++.++-|++.-|++. |++ -.||-.+=. ++.-.=..|..+...++++|
T Consensus 24 ~~d~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Lt---ri~~~hr~iE~~lk~f~~~L~~~lI~ 100 (231)
T cd07643 24 WEDFVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALT---RMCMRHKSIETKLKQFTSALMDCLVN 100 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred ---HHHHhhhcchhHHHHH----HHHHHHHHHHHHh-hhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 150 ---AKLQADNQQIPLLRAE----IDGLHQELMHARA-AVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 150 ---~r~~ad~qqipal~aE----ie~lrqElqr~Ra-a~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
.|...+.+.++-|.-+ -..+|+||.++-+ ++..+||++--- ....--|.+-..||-.-+.+|+.+++.
T Consensus 101 pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rKg~----~~~~~~ldsa~~dvn~k~~~lEe~ek~ 176 (231)
T cd07643 101 PLQEKIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARKGK----GDLQPQLDSAMQDVNDKYLLLEETEKK 176 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccC----CccchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred C
Q 039268 222 P 222 (276)
Q Consensus 222 ~ 222 (276)
+
T Consensus 177 a 177 (231)
T cd07643 177 A 177 (231)
T ss_pred H
No 440
>PRK11020 hypothetical protein; Provisional
Probab=52.23 E-value=92 Score=26.58 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=26.3
Q ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhH
Q 039268 151 KLQADNQQIPLLRAEIDGLHQELMHARAAVDYE 183 (276)
Q Consensus 151 r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 183 (276)
..+.|.--|..+..|++.|..||.+++.--.|+
T Consensus 25 ~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~ 57 (118)
T PRK11020 25 SLRGDAEKYAQFEKEKATLEAEIARLKEVQSQK 57 (118)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888999999999999998765443
No 441
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=52.21 E-value=2.6e+02 Score=29.60 Aligned_cols=122 Identities=21% Similarity=0.237 Sum_probs=73.4
Q ss_pred HhhhccccccchhhHHHHHHH----------HH-HHHHHHHHHHHHHHHhhhhHHH---HHHHHHHhhhhhhhhhhhchh
Q 039268 51 IQRLLGDNRRLVEDRMAMQRE----------LA-AAKEELHRMNLVIGEIRAEQEV---HVRDLVEKGLKLEADLRATEP 116 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqe----------La-aaq~Elqrl~~~~~~i~ae~e~---q~R~l~ek~~KmEAelra~e~ 116 (276)
+.-+-.+|-+|-..-.-|++| +- ..-++++-+|..+..++.|-+. +.--.++.+-||+++| ..
T Consensus 168 Lk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql---~d 244 (596)
T KOG4360|consen 168 LKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL---VD 244 (596)
T ss_pred cCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh
Confidence 444455565555444444443 22 5567778888888877666553 3344577788888844 44
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
+++++.-.++|...|...-|....--..++.|+.-.+-- -....+++..-..||+.+|+
T Consensus 245 ~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk---yAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 245 LQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK---YAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcc
Confidence 566666677777777776666666555666665544422 23344555556667777765
No 442
>PRK11281 hypothetical protein; Provisional
Probab=52.21 E-value=4.1e+02 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
+.++|+..|.++...+..+...++.-|
T Consensus 133 ~~~~Lq~~Q~~La~~NsqLi~~qT~PE 159 (1113)
T PRK11281 133 TLDQLQNAQNDLAEYNSQLVSLQTQPE 159 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchH
Confidence 334444555555555544444444333
No 443
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=51.95 E-value=1.4e+02 Score=24.76 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 62 VEDRMAMQRELAAAKEELHRMNLVIGEI 89 (276)
Q Consensus 62 aatHvaLrqeLaaaq~Elqrl~~~~~~i 89 (276)
...+..|++++...++.+..|...+.++
T Consensus 12 ~~~~~~l~~~~~~l~~~~~~l~~~~~e~ 39 (140)
T PRK03947 12 AAQLQALQAQIEALQQQLEELQASINEL 39 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555544
No 444
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=51.93 E-value=2.5e+02 Score=29.43 Aligned_cols=19 Identities=5% Similarity=0.107 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 039268 163 RAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 163 ~aEie~lrqElqr~Raa~E 181 (276)
..|.+.+...+......++
T Consensus 566 ~ee~~~l~~~l~~~~~wL~ 584 (653)
T PTZ00009 566 DSDKATIEKAIDEALEWLE 584 (653)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3566777777777777775
No 445
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.82 E-value=2.9e+02 Score=30.44 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 79 LHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ 158 (276)
Q Consensus 79 lqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq 158 (276)
+++|..-|.+ .++|++-.-=..---.+++ +- ||.+||+|+|+ |.++|......|+.+-
T Consensus 50 ~e~Le~~ir~--~d~EIE~lcn~hyQdFids-------Id-EL~~Vr~daq~-------Lks~vsd~N~rLQ~~g----- 107 (800)
T KOG2176|consen 50 MEKLENRIRN--HDKEIEKLCNFHYQDFIDS-------ID-ELLKVRGDAQK-------LKSQVSDTNRRLQESG----- 107 (800)
T ss_pred HHHHHHHHHh--hHHHHHHHHHHHhhhHHHH-------HH-HHHHHHHHHHH-------HHHHHhhhhhHHHHHH-----
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
+|+-...++|.++|+-=..=.++-.-..-=+++||.
T Consensus 108 -----~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl 143 (800)
T KOG2176|consen 108 -----KELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLEL 143 (800)
T ss_pred -----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
No 446
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=51.77 E-value=1.1e+02 Score=29.04 Aligned_cols=16 Identities=50% Similarity=0.960 Sum_probs=11.9
Q ss_pred CCCCCCCCCC-CCCCCC
Q 039268 226 GGPYGMNFSG-VDGSFP 241 (276)
Q Consensus 226 g~~Yg~~yg~-p~~~~~ 241 (276)
.|-|||||+. |+...+
T Consensus 279 agiyGMNf~~mPel~~~ 295 (322)
T COG0598 279 TGFYGMNFKGMPELDWP 295 (322)
T ss_pred HcccccCCCCCcCCCCc
Confidence 4899999986 765443
No 447
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=51.50 E-value=1.6e+02 Score=28.81 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
|+.+--+|+--+.+.+.++|.+.+...++..+.- .|++ -.+-=|.||.+.|.-+..|.++|=-.+.
T Consensus 103 l~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea-----------~L~~---Kierrk~ElEr~rkRle~LqsiRP~~Md 168 (338)
T KOG3647|consen 103 LLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEA-----------ALGS---KIERRKAELERTRKRLEALQSIRPAHMD 168 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----------HHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHH
Q ss_pred HHHHHHHHHHHH
Q 039268 141 KVQTLQKDLAKL 152 (276)
Q Consensus 141 qvq~l~~eL~r~ 152 (276)
+-.....||+++
T Consensus 169 EyE~~EeeLqkl 180 (338)
T KOG3647|consen 169 EYEDCEEELQKL 180 (338)
T ss_pred HHHHHHHHHHHH
No 448
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=51.46 E-value=13 Score=36.37 Aligned_cols=103 Identities=18% Similarity=0.300 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRAT----EPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
-+|......|..|...+..+..- +..+..++.-|+++|... ..++.+|.-+..+|+.|...-.+|+..|-.+
T Consensus 28 GDLs~I~eRLsaLEssv~sL~~S----Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 28 GDLSPIRERLSALESSVASLSDS----VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 55666666666665555544432 555555666666655433 3445555555555555555555555555555
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 146 QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 146 ~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
+..+.-.. ..|..|...+.+|.-++-.+++.
T Consensus 104 S~~ls~h~---ssIS~Lqs~v~~lsTdvsNLksd 134 (326)
T PF04582_consen 104 SSTLSDHS---SSISDLQSSVSALSTDVSNLKSD 134 (326)
T ss_dssp -----------------HHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhh---hhHHHHHHhhhhhhhhhhhhhhh
Confidence 44433322 22344444444444444444333
No 449
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=51.18 E-value=1.8e+02 Score=26.01 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=18.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
.+.||.||.++..||+. .||-|.++.
T Consensus 31 ~eeLr~EL~KvEeEI~T---LrqvL~aKe 56 (162)
T PF04201_consen 31 REELRSELAKVEEEIQT---LRQVLAAKE 56 (162)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 36688888888888874 466666553
No 450
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=50.81 E-value=1.6e+02 Score=25.08 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=46.1
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQK-LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+|-.++..++...+..+.|..++..+.++ |..++++-..-+....++-.+...+. +-..+.| ....+..++..|
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~--~~~A~~e---a~~~~~~a~~~i 113 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADA--KEEAQVE---GDKMIEQAKASI 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHH
Confidence 44456666666677777777777777663 55556555555555444433333222 1222222 334456677777
Q ss_pred hhHHhhhHH
Q 039268 181 DYEKKANIE 189 (276)
Q Consensus 181 EyEKk~~~e 189 (276)
+.|+..-..
T Consensus 114 ~~ek~~a~~ 122 (164)
T PRK14471 114 ESEKNAAMA 122 (164)
T ss_pred HHHHHHHHH
Confidence 777765543
No 451
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=50.65 E-value=3.5e+02 Score=29.57 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=24.8
Q ss_pred HhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 51 IQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 51 iqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
+.||-.|-.-|+-+-.+|-..+.+..+-|+-|-..|.
T Consensus 113 LaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie 149 (861)
T KOG1899|consen 113 LARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIE 149 (861)
T ss_pred HHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4456677777777777777777777766666655554
No 452
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=50.58 E-value=14 Score=32.83 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHH
Q 039268 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 92 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q 129 (276)
|-|..+-.-||+.+-||.||...|.|+.|++.++-|+.
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~R 41 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELR 41 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666677889999999999666666655555555444
No 453
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=50.54 E-value=1.1e+02 Score=31.60 Aligned_cols=131 Identities=19% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCChhhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh
Q 039268 34 PPHPALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA 113 (276)
Q Consensus 34 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra 113 (276)
||+-.-|=.-|..-..|-..++.+| ..|||.|.-+.|||-+-.-.. +|-.|-
T Consensus 63 ~~satSIPalL~~lQdEWDavML~~-------F~LRqqL~ttrQELShaLYqh---------------------DAAcrV 114 (506)
T KOG0289|consen 63 PPSATSIPALLKTLQDEWDAVMLES-------FTLRQQLQTTRQELSHALYQH---------------------DAACRV 114 (506)
T ss_pred CCCccchHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHhh---------------------hHHHHH
Confidence 4433333334444456666666655 789999999999987754332 344555
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhc--chhHHHHHHHHHHHHHHHHHhhh---
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGK--------VQTLQKDLAKLQADNQ--QIPLLRAEIDGLHQELMHARAAV--- 180 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~q--------vq~l~~eL~r~~ad~q--qipal~aEie~lrqElqr~Raa~--- 180 (276)
..-|.+|+..+|-.+-+| .+.-.+- .|.-....+.-..+.| --|++++.++.--|+|.+-|..+
T Consensus 115 iaRL~kE~~eareaLa~~---~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg~k 191 (506)
T KOG0289|consen 115 IARLTKERDEAREALAKL---SPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRGKK 191 (506)
T ss_pred HHHHHHHHHHHHHHHhhc---CcccccccccccccccccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhcccc
Confidence 566666776666544332 2222222 2222233445556666 66888888888888888777766
Q ss_pred hhHHhhhHHHHHHHH
Q 039268 181 DYEKKANIELMEQRQ 195 (276)
Q Consensus 181 EyEKk~~~e~~Eq~q 195 (276)
.-||-+..|.+.++.
T Consensus 192 ~p~~la~~d~~~~~~ 206 (506)
T KOG0289|consen 192 LPEKLATTDELSCLL 206 (506)
T ss_pred CCcccccHHHHHHHH
Confidence 446666666665543
No 454
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=50.44 E-value=1.9e+02 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
+...+.+|+|.++++.++|....+.
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~ 101 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLG 101 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHH
Confidence 4567788888888888888765554
No 455
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.44 E-value=1.8e+02 Score=25.76 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=58.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh-----hHHhhh
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD-----YEKKAN 187 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E-----yEKk~~ 187 (276)
=.++|| |..+.=.=|+.+...|.-...+.+.+..+|.+.+.+ |..||+..+.++..+...+. +++...
T Consensus 97 f~e~Lk-ey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~ 169 (200)
T cd07624 97 FLPPLR-EYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE------LLKEVEKLQDKLECANADLKADLERWKQNKR 169 (200)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777 777777777888888888888888888888888877 77788888888777777663 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039268 188 IELMEQRQAMEKNLVSMAREV 208 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarEv 208 (276)
.|.-.....+=+..|.+...+
T Consensus 170 ~d~k~~l~~~a~~qi~~~~~~ 190 (200)
T cd07624 170 QDLKKILLDMAEKQIQYYEQC 190 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 456
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=50.37 E-value=1.5e+02 Score=24.72 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=19.3
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
.|.++...++. ..+.+|.++.....+++.|...-+++..+.+.+
T Consensus 45 ~lAe~nL~~~~---~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 45 ELAEQNLSLEP---ELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 222355555555555555555544444444444
No 457
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=50.35 E-value=1.5e+02 Score=29.39 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~ 87 (276)
.|++++.....+++.+...+.
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~ 351 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELE 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444433333
No 458
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=50.33 E-value=1.4e+02 Score=24.44 Aligned_cols=95 Identities=19% Similarity=0.291 Sum_probs=53.6
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQ-KLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q-~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+|-.++..++...+..+.|..+...+.+ +|..++++-..-+.....+..+...+. +...+.| +.+.+..++..|
T Consensus 36 ~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~--~~~a~~e---a~~~~~~a~~~i 110 (140)
T PRK07353 36 EREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEA--LAEAQAE---AQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHH
Confidence 3445566666666666666666666654 355556665555666555544444333 2233333 344556778888
Q ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 181 DYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 181 EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
+.|++.-... +.+..+.+|-+
T Consensus 111 ~~e~~~a~~~------l~~~v~~la~~ 131 (140)
T PRK07353 111 EQQKQAALAQ------LEQQVDALSRQ 131 (140)
T ss_pred HHHHHHHHHH------HHHHHHHHHHH
Confidence 8888765433 33445555555
No 459
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=50.26 E-value=1.2e+02 Score=23.64 Aligned_cols=72 Identities=19% Similarity=0.233 Sum_probs=35.1
Q ss_pred HHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHHHHHHH
Q 039268 100 LVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI-PLLRAEIDGLHQEL 173 (276)
Q Consensus 100 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqi-pal~aEie~lrqEl 173 (276)
+++++..|-..|+..+.++ ++.++...+..=-.+ +.|..+.+.+.+++...+..-+.. .....+++.+..++
T Consensus 2 I~~~a~eL~~~I~~s~ey~-~~~~a~~~l~~d~e~-~~l~~~f~~~q~~~~~~q~~g~~~~~e~~~~l~~~~~~l 74 (108)
T PF06133_consen 2 IYDKANELAEAIKESEEYK-RYKAAEEALEADPEA-QKLIEEFQKLQQELQNAQMYGKEPPKEEIEELQELQEEL 74 (108)
T ss_dssp HHHHHHHHHHHHHTSHHHH-HHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHH-HHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHH
Confidence 5566666666666666666 555555544432222 234444455555555544443333 23333444444443
No 460
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=50.15 E-value=2.4e+02 Score=27.12 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=55.7
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNL------RNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~------RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
+|.+.|.-.+.++=+|.=+|.=+..+.-+ .+....+.+...+.|...+.++ -.+..|+....+|+.-++..
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL---e~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL---EELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 44444444454555555555433333322 3334444444444444444333 33456777777777777777
Q ss_pred hhhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 180 VDYEKKAN-IELMEQRQAMEKNLVSMAREVEKLR 212 (276)
Q Consensus 180 ~EyEKk~~-~e~~Eq~qaMEknlisMarEvEKLR 212 (276)
|. |-+++ .++=.-.-.|.|++..+-.=|+|..
T Consensus 230 i~-e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 230 IT-EMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 75 33333 3333345567788888777777764
No 461
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=50.13 E-value=2.7e+02 Score=31.45 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSM 204 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisM 204 (276)
.|++.|+.|+...|.-|. .|.+...=+++.|..+.++
T Consensus 1092 helenLrnEieklndkIk----dnne~~QVglae~nslmTi 1128 (1424)
T KOG4572|consen 1092 HELENLRNEIEKLNDKIK----DNNEGDQVGLAEENSLMTI 1128 (1424)
T ss_pred HHHHHHHHHHHHHHHHhh----cCCCcchHHHHHhccCCcc
Confidence 455666666666665553 3444444444544444433
No 462
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=50.07 E-value=1.2e+02 Score=26.83 Aligned_cols=46 Identities=28% Similarity=0.614 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhcchhHHHHHHHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQTLQKDLAKL----QADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~~eL~r~----~ad~qqipal~aEie~lrqElq 174 (276)
..|..++..|...+..+..+...+ .++.-.||.|+.+|+.++.+|+
T Consensus 131 ~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 131 NELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345555666666666666664433 3566778888888888877664
No 463
>PRK10698 phage shock protein PspA; Provisional
Probab=50.07 E-value=2e+02 Score=26.20 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHH-------HHHhhhhhhhhhhhc----hhhHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMN-LVIGEIRAEQEVHVRD-------LVEKGLKLEADLRAT----EPLKKEAVQLRAEV 128 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~-~~~~~i~ae~e~q~R~-------l~ek~~KmEAelra~----e~lk~El~q~raE~ 128 (276)
..++...|.+++..++..+.... .+..+|++-.|-=-|+ .-+++..|+.++... +.|+..+.+++..+
T Consensus 50 ~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki 129 (222)
T PRK10698 50 ALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKL 129 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666555 3444555555544555 445555555544332 33444555555555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039268 129 QKLNNLRNELNGKVQT 144 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~ 144 (276)
+.+-+-+..|.++.+.
T Consensus 130 ~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 130 SETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555544443
No 464
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=49.96 E-value=42 Score=23.66 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=14.0
Q ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 148 DLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
||.+++.|+ +..++.||+.+++|+.-|
T Consensus 4 dle~~KqEI--L~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 4 DLERLKQEI--LEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344444444 445556666666665443
No 465
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=49.92 E-value=3.7e+02 Score=29.20 Aligned_cols=153 Identities=15% Similarity=0.175 Sum_probs=83.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRA---EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKL 131 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~a---e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L 131 (276)
+.+--..-..|-.|++++......++-|.+....+.. .-|.|.|.+.....++++++............-..|+.+
T Consensus 488 m~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~- 566 (698)
T KOG0978|consen 488 MSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQ- 566 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333344557788888888888888888776665543 346778888888888888777655544343333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 132 NNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 132 ~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
....|..++....+.|.+++- ++.++..||+.+++=..|+=..++-.++. ++-++.++. .+.=.+.|
T Consensus 567 --~~~~Lq~~~ek~~~~le~i~~---~~~e~~~ele~~~~k~~rleEE~e~L~~k----le~~k~~~~----~~s~d~~L 633 (698)
T KOG0978|consen 567 --SLEDLQIELEKSEAKLEQIQE---QYAELELELEIEKFKRKRLEEELERLKRK----LERLKKEES----GASADEVL 633 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccccc----cccccHHH
Confidence 333333333333333333332 23445566666666555544444333332 233333322 22235666
Q ss_pred HHHhhhccCC
Q 039268 212 RAELTNFDGR 221 (276)
Q Consensus 212 RaElanae~r 221 (276)
..||.+....
T Consensus 634 ~EElk~yK~~ 643 (698)
T KOG0978|consen 634 AEELKEYKEL 643 (698)
T ss_pred HHHHHHHHhc
Confidence 6666665544
No 466
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=49.91 E-value=99 Score=29.68 Aligned_cols=53 Identities=32% Similarity=0.446 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 91 AEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 91 ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
+|-|.+|++|.|...+|-+ |-+-+|.--..|.+.-+||...+.-+.++|+-++
T Consensus 93 ~eme~~i~dL~een~~L~~----------en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~ 145 (292)
T KOG4005|consen 93 EEMEYEIKDLTEENEILQN----------ENDSLRAINESLLAKNHELDSELELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhH
Confidence 3556777777777666544 4444555556677777777777777777766554
No 467
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=49.91 E-value=35 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 140 GKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 140 ~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
+++..|..=++.++.-+.+-+.|.+.++.|+.||-++
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3444455545556666666677777777787777664
No 468
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=49.75 E-value=2.8e+02 Score=27.79 Aligned_cols=123 Identities=24% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
.-|...+.||..|+..-.+|. ++|. +|.-+|. ++-..-=+.+.++..+.+-+
T Consensus 10 ~~l~~I~~eLEkLN~sTDdIN---------------~~E~----------~Le~ar~---~Fretqv~~t~kl~el~Kk~ 61 (426)
T KOG2008|consen 10 EVLPRIQGELEKLNQSTDDIN---------------RRET----------ELEDARQ---KFRETQVEATVKLDELVKKI 61 (426)
T ss_pred HHHHHHHHHHHHhccchhhHH---------------HHHH----------HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHH---------------------HHHHHH
Q 039268 150 AKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLV---------------------SMAREV 208 (276)
Q Consensus 150 ~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli---------------------sMarEv 208 (276)
.+.-++..+.=.|+.=--.+|-|.|.+-..||--|..-----||++-.+..|. -|-.|=
T Consensus 62 ~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~ 141 (426)
T KOG2008|consen 62 GKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQ 141 (426)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhccC
Q 039268 209 EKLRAELTNFDG 220 (276)
Q Consensus 209 EKLRaElanae~ 220 (276)
||+|||+.-+.+
T Consensus 142 e~t~aE~~Has~ 153 (426)
T KOG2008|consen 142 EKTRAELVHAST 153 (426)
T ss_pred HHHHHHHHHHHH
No 469
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=49.72 E-value=23 Score=23.43 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 039268 159 IPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~E 181 (276)
|..|+++|+.+|+|+.-.+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999886
No 470
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=49.65 E-value=1.5e+02 Score=31.86 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 039268 81 RMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP 160 (276)
Q Consensus 81 rl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip 160 (276)
+|...+.++.+.-|..+..++..+=|.=. |+.-++.|+.. |..++..+.+++..+..+..+.=
T Consensus 42 kLql~~qe~~~~le~~~~q~l~~~Pr~~~----------ev~~l~~ea~~-------L~~~~~~v~~~~~~~e~~t~~s~ 104 (766)
T PF10191_consen 42 KLQLYSQEVNASLEETSQQALQRVPRVLR----------EVDRLRQEAAS-------LQEQMASVQEEIKAVEQDTAQSM 104 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHH----------HHHHHHHHHHH-------HHHHHHHHHHHHhhhhccHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 039268 161 LLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa~Ey 182 (276)
..-.+||..++-++.++.+...
T Consensus 105 ~~L~~ld~vK~rm~~a~~~L~E 126 (766)
T PF10191_consen 105 AQLAELDSVKSRMEAARETLQE 126 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 471
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.58 E-value=1e+02 Score=26.15 Aligned_cols=50 Identities=20% Similarity=0.290 Sum_probs=40.2
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD 155 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad 155 (276)
.+++++.+.+.|+.|+....+..++-...-++|...++.+..++.+...+
T Consensus 35 qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 35 QLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34477778888888999888888888888888888888888886665554
No 472
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.30 E-value=2.4e+02 Score=26.82 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 039268 90 RAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNE 137 (276)
Q Consensus 90 ~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rqe 137 (276)
+.+..--++.+.+...++--.....+.|++.|.+...++++.+..-++
T Consensus 36 q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~e 83 (246)
T KOG4657|consen 36 QSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTE 83 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334666677777777788777777888888888888887775554433
No 473
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=49.20 E-value=2.4e+02 Score=26.73 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhh----hHHHHH-HHHHHHHHHHHHHHH
Q 039268 133 NLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKA----NIELME-QRQAMEKNLVSMARE 207 (276)
Q Consensus 133 ~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~----~~e~~E-q~qaMEknlisMarE 207 (276)
.+=-++..|.+.+.++..+...|+.-.|. .-|..|..+.+.+|-+|-..-.. +...++ -+.-..+.+....+.
T Consensus 69 ~sW~~il~QTE~isk~~~~~Aeeln~~~~--~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~~~c~~ 146 (237)
T cd07685 69 QSWAVLVSQTETLSQVLRKHAEDLNAGPL--SKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYRSLAKD 146 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677778888887777766655444 34455555555544443221111 112332 244455556666666
Q ss_pred HHHHHHHhhhc
Q 039268 208 VEKLRAELTNF 218 (276)
Q Consensus 208 vEKLRaElana 218 (276)
++..|.....+
T Consensus 147 ~e~AR~K~eka 157 (237)
T cd07685 147 SAQAKRKYQEA 157 (237)
T ss_pred HHHHHHHHHhc
Confidence 66655555443
No 474
>PRK10698 phage shock protein PspA; Provisional
Probab=48.87 E-value=2.1e+02 Score=26.08 Aligned_cols=37 Identities=11% Similarity=0.262 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
|+.++.+++..+-+..+....+..++..+.....+..
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e 72 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQ 72 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555544333
No 475
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.84 E-value=1.9e+02 Score=29.46 Aligned_cols=51 Identities=25% Similarity=0.335 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ-QIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q-qipal~aEie~lrqElqr~R 177 (276)
+...+..+++.|.+.|.+|+.++. ++..... -+..|++|+..+..++..+-
T Consensus 37 ~~r~~~~~~e~l~~~rn~~sk~ig-------~~~~~~~~~~~~l~~e~~~l~~~l~~~e 88 (429)
T COG0172 37 ERRKLLRELEELQAERNELSKEIG-------RALKRGEDDAEELIAEVKELKEKLKELE 88 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhhccchhHHHHHHHHHHHHHHHHhcc
Confidence 444445555566666666666665 2221111 35666677776666665443
No 476
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=48.69 E-value=91 Score=25.17 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 89 IRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 89 i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
+-.+--..+.++-..+..+|+.|+. +.=+.++...=-++|.....+=+||+++|.+
T Consensus 41 ~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~l 96 (97)
T PF14966_consen 41 LCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQEQEKEKLELTAKLQVL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456677777888899999986 6667788888889999999999999999876
No 477
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=48.10 E-value=87 Score=22.83 Aligned_cols=12 Identities=25% Similarity=0.357 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 039268 165 EIDGLHQELMHA 176 (276)
Q Consensus 165 Eie~lrqElqr~ 176 (276)
|.+.|.+|+..+
T Consensus 39 e~~~L~~ei~~l 50 (80)
T PF04977_consen 39 ENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHh
Confidence 334444444444
No 478
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=48.07 E-value=2.2e+02 Score=26.07 Aligned_cols=77 Identities=6% Similarity=0.205 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHhhhccccccchh-------hHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHhhhh
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLVE-------DRMAMQRELAAAKEELHRMNLVIGEIRAE----QEVHVRDLVEKGLK 106 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLaa-------tHvaLrqeLaaaq~Elqrl~~~~~~i~ae----~e~q~R~l~ek~~K 106 (276)
.-|+..+..-...+..-+.+=+.+.. .=..|...+......|+-+...+..+-.+ ....+...++.+.+
T Consensus 55 ~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~ 134 (264)
T PF06008_consen 55 ESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQR 134 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHH
Confidence 34455554444444444444333333 22333333444444444443333333221 11344445555555
Q ss_pred hhhhhhhc
Q 039268 107 LEADLRAT 114 (276)
Q Consensus 107 mEAelra~ 114 (276)
|=.+||.+
T Consensus 135 mL~emr~r 142 (264)
T PF06008_consen 135 MLEEMRKR 142 (264)
T ss_pred HHHHHHhc
Confidence 55555544
No 479
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.99 E-value=4.2e+02 Score=29.26 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHH
Q 039268 40 LEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKK 119 (276)
Q Consensus 40 LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~ 119 (276)
+...+..+...+...+.. +..+.++....++.++.+..... ...+...+.....-....+........
T Consensus 312 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1042)
T TIGR00618 312 IHTELQSKMRSRAKLLMK-------RAAHVKQQSSIEEQRRLLQTLHS-----QEIHIRDAHEVATSIREISCQQHTLTQ 379 (1042)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH-----hChhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
++.+...+++.....-+.+..++..+.+.........+++-.+..++..++..+.....--+...........+....++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (1042)
T TIGR00618 380 HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 039268 200 NLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 200 nlisMarEvEKLRaElanae~ 220 (276)
-+.....+++....++.+.++
T Consensus 460 ~l~~~~~~~~~~~~~l~~~~~ 480 (1042)
T TIGR00618 460 HLQESAQSLKEREQQLQTKEQ 480 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 480
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.93 E-value=1.4e+02 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 122 VQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 122 ~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
..+..+|++|..-|..|..++........+++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 55556666766666666666655555544433
No 481
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.87 E-value=3.7e+02 Score=30.54 Aligned_cols=63 Identities=19% Similarity=0.238 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
++..+.+++..+...+.+|..+++...+||...+..++.+---+.+++.-...++.--+.||.
T Consensus 637 ~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~ 699 (1072)
T KOG0979|consen 637 EIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIEN 699 (1072)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555544443333333333333333344444444443
No 482
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=47.84 E-value=35 Score=24.68 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~ 186 (276)
|.+|+..++.|+.+++++.++|.-=||+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999998777765
No 483
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.76 E-value=1.1e+02 Score=23.69 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
..|+.|+..+..+...|...+.+|..+.+.+.+|
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555
No 484
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=47.70 E-value=1.6e+02 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=8.1
Q ss_pred HHHHHHhhhhhHHhhhH
Q 039268 172 ELMHARAAVDYEKKANI 188 (276)
Q Consensus 172 Elqr~Raa~EyEKk~~~ 188 (276)
-+..+|.-|+.|+..+.
T Consensus 57 ~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 57 QIQSIQQQFEQEKQERL 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 485
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=47.54 E-value=1.6e+02 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 039268 160 PLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 160 pal~aEie~lrqElqr~Raa~ 180 (276)
.....|++.+.+++++....+
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~~ 99 (158)
T PF03938_consen 79 QKRQQELQQKEQELQQFQQQA 99 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666655543
No 486
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.46 E-value=99 Score=28.81 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=32.3
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 154 ADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 154 ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
+..+.+-.|...|+.|++|+.++|-.||.- .-+++.|.+.--..=.+++.+...
T Consensus 51 ~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~-------~~~l~~~~~rq~~~y~dld~r~~~ 104 (263)
T PRK10803 51 AHSQLLTQLQQQLSDNQSDIDSLRGQIQEN-------QYQLNQVVERQKQIYLQIDSLSSG 104 (263)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555667788888888888888887753 333444444444444455554433
No 487
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=47.45 E-value=1.8e+02 Score=24.75 Aligned_cols=86 Identities=15% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHhhhhhhhhhhhc-hhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Q 039268 86 IGEIRAEQEVHVRDLVEKGLKLEADLRAT-EPLKKEAVQLRAEVQKLN----------------NLRNELNGKVQTLQKD 148 (276)
Q Consensus 86 ~~~i~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~----------------~~RqeL~~qvq~l~~e 148 (276)
+.++=.+++..|..-++.+.+...+.... +.++..|.+++.+++++. .+++|....++...++
T Consensus 47 i~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~ 126 (156)
T CHL00118 47 LLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQ 126 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHH
Q 039268 149 LAKLQADNQQIPLLRAEIDGLHQEL 173 (276)
Q Consensus 149 L~r~~ad~qqipal~aEie~lrqEl 173 (276)
+.+.+... +-.|+.++..+-.++
T Consensus 127 i~~ek~~a--~~~l~~~v~~lA~~i 149 (156)
T CHL00118 127 LEAQKEKA--LKSLEEQVDTLSDQI 149 (156)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHH
No 488
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.27 E-value=99 Score=27.26 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 189 ELMEQRQAMEKNLVSMAREVEKLRA 213 (276)
Q Consensus 189 e~~Eq~qaMEknlisMarEvEKLRa 213 (276)
..-++..+-=+.|++.|+=|-|--.
T Consensus 74 ~~~~~~~v~~~eLL~YA~rISk~t~ 98 (188)
T PF10018_consen 74 PKAEKRPVDYEELLSYAHRISKFTS 98 (188)
T ss_pred cccccCCCCHHHHHHHHHHHHHhcC
Confidence 3333344445668899988776543
No 489
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=47.20 E-value=28 Score=38.95 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 039268 159 IPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~ 180 (276)
|..||+=+|+|--|.-.-=+.|
T Consensus 1098 ItgLr~AmEaLvvev~knPaiI 1119 (1282)
T KOG0921|consen 1098 ITGLRPAMEALVVEVCKNPAII 1119 (1282)
T ss_pred HhhhHHHHHHHHHHHhcChhHh
Confidence 4555666666655544443333
No 490
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=46.80 E-value=2.9e+02 Score=27.10 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHH-HHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLN-NLRNELN 139 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~-~~RqeL~ 139 (276)
|-..+..||.+|..-+.....|...+..|+...- -+...+-.|-|.-+.--+| -|+++..|-..|+ .+-+|=-
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv-----~~~~~aEqEEE~isN~LlK-kl~~l~keKe~L~~~~e~EEE 105 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALREASV-----RIQAKAEQEEEFISNTLLK-KLQQLKKEKETLALKYEQEEE 105 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554444332 2333445566677777777 4777777777774 5555444
Q ss_pred HHHHHHHHHHHHHHhhh
Q 039268 140 GKVQTLQKDLAKLQADN 156 (276)
Q Consensus 140 ~qvq~l~~eL~r~~ad~ 156 (276)
--+..|++-|.+++.+.
T Consensus 106 ~ltn~L~rkl~qLr~EK 122 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEK 122 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 491
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=46.60 E-value=1.4e+02 Score=23.42 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMA 205 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMa 205 (276)
.|+.+..+.-..+++.++.-+.+|..++.. ..+-|..++.. +.++++=.+.|.+||...-
T Consensus 11 ~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~-------------s~~rl~~~~~~-------f~~~~~~l~~mK~DLd~i~ 70 (88)
T PF10241_consen 11 EDLDEILALQAQTLGRLNKTNEELLNLNDL-------------SQQRLAEARER-------FARHTKLLKEMKKDLDYIF 70 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666655555554422 23344444444 3556667788999999999
Q ss_pred HHHHHHHHHhhhc
Q 039268 206 REVEKLRAELTNF 218 (276)
Q Consensus 206 rEvEKLRaElana 218 (276)
+=|.+|++.|+..
T Consensus 71 krir~lk~kl~~~ 83 (88)
T PF10241_consen 71 KRIRSLKAKLAKQ 83 (88)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988753
No 492
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=46.54 E-value=2.2e+02 Score=25.50 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI-DGLHQELMH 175 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi-e~lrqElqr 175 (276)
++.++....+.=. ..+.+.++|..+++.+.+|...-+-...+++.+..|+..++.-.++.-.--.+| +.++.|+.+
T Consensus 103 vk~~~~~R~~~~~---~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~r 179 (216)
T cd07627 103 VRAAFAQRQKLWQ---YWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELER 179 (216)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H-HhhhhhHHhhhHHHHHHHHHHHHHHHHH
Q 039268 176 A-RAAVDYEKKANIELMEQRQAMEKNLVSM 204 (276)
Q Consensus 176 ~-Raa~EyEKk~~~e~~Eq~qaMEknlisM 204 (276)
- +.-+..-|+.-...++-.=...|.+|..
T Consensus 180 F~~~r~~dfk~~l~~~~e~~ie~~k~~ie~ 209 (216)
T cd07627 180 FERERVEDFRNSVEIYLESAIESQKELIEL 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=46.31 E-value=2.3e+02 Score=25.65 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=7.2
Q ss_pred HHHHHhhhhhHHh
Q 039268 173 LMHARAAVDYEKK 185 (276)
Q Consensus 173 lqr~Raa~EyEKk 185 (276)
+..++..|+-+|.
T Consensus 151 l~~Ae~~I~~ek~ 163 (204)
T PRK09174 151 LKEAEARIAAIKA 163 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555655555
No 494
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=46.26 E-value=4e+02 Score=28.49 Aligned_cols=36 Identities=8% Similarity=0.317 Sum_probs=18.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039268 57 DNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAE 92 (276)
Q Consensus 57 dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae 92 (276)
++.++..+..-|.|.|-.-..++...++-...|+.+
T Consensus 415 ~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q 450 (607)
T KOG0240|consen 415 EEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQ 450 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544444443
No 495
>PRK15396 murein lipoprotein; Provisional
Probab=45.95 E-value=1.2e+02 Score=23.88 Aligned_cols=37 Identities=30% Similarity=0.409 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
|..++.++.+++..|...=+.+...++....|-.|+.
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN 66 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444
No 496
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=45.90 E-value=2e+02 Score=24.84 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=43.8
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhH
Q 039268 105 LKLEADLRATEPLKKEAVQLRAEVQK-LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYE 183 (276)
Q Consensus 105 ~KmEAelra~e~lk~El~q~raE~q~-L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 183 (276)
.++..++...+..+.|..+...+.++ |..++.+-..-+.....+-.+...+. +-..+.|++ +.+..++..|+.|
T Consensus 50 ~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~--~~~A~~ea~---~~~~~a~~~ie~e 124 (173)
T PRK13460 50 SGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKL--LEETNNEVK---AQKDQAVKEIELA 124 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHHH
Confidence 34444555555555555555444432 44444444444555555543333322 222233333 3455677777777
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 184 KKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 184 Kk~~~e~~Eq~qaMEknlisMarE 207 (276)
+..-.. .+.+..+.+|-+
T Consensus 125 ~~~a~~------el~~ei~~lA~~ 142 (173)
T PRK13460 125 KGKALS------QLQNQIVEMTIT 142 (173)
T ss_pred HHHHHH------HHHHHHHHHHHH
Confidence 665433 334445555544
No 497
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.34 E-value=1.8e+02 Score=24.21 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNEL 138 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL 138 (276)
|+||....-||-...+.+.=+=-=.+-.. .|..+|+..|. .|..+..|+..|.=--+-|
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~------------------~L~e~Lk~ke~---~LRk~eqE~dSL~FrN~QL 59 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNA------------------ELKEQLKEKEQ---ALRKLEQENDSLTFRNQQL 59 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 039268 139 NGKVQTLQKDLAKLQADNQQ 158 (276)
Q Consensus 139 ~~qvq~l~~eL~r~~ad~qq 158 (276)
+..|..|..||.....-.++
T Consensus 60 ~kRV~~LQ~El~~~~~~~~k 79 (102)
T PF10205_consen 60 TKRVEVLQEELEESEQKSKK 79 (102)
T ss_pred HHHHHHHHHHHHHhhccccc
No 498
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.20 E-value=24 Score=34.79 Aligned_cols=39 Identities=28% Similarity=0.525 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 039268 226 GGPYGMNFSGVDGSFPAPFGDGYGVHRGLADKGPMYGPRPAS 267 (276)
Q Consensus 226 g~~Yg~~yg~p~~~~~~~Y~d~Yg~~~g~~~~~~~yg~g~~~ 267 (276)
.++|+.+||.--+.|++-|+.+|| |+.-.+..||..+.+
T Consensus 67 ~~~~~~~~G~Gyg~YGgGygg~fG---gGyN~~~~~g~np~s 105 (362)
T KOG3875|consen 67 VPGSGYNYGSGYGPYGGGYGGGFG---GGYNRFGPYGTNPES 105 (362)
T ss_pred cCCcccccCCCCCCcCCCcCcccC---cccccccccccCcch
No 499
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.07 E-value=2.5e+02 Score=25.81 Aligned_cols=97 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Q 039268 77 EELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL--RNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 77 ~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~--RqeL~~qvq~l~~eL~r~~a 154 (276)
.|++.|-..|+ ++++ -.-+++++.--+.+||+.|.+. -.||..+++.|.+|..-..-
T Consensus 79 eel~~ld~~i~------------------~l~e---k~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~e 137 (201)
T KOG4603|consen 79 EELQVLDGKIV------------------ALTE---KVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRE 137 (201)
T ss_pred HHHHHHhHHHH------------------HHHH---HHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q ss_pred hhcchhHHHHHH-----HHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 155 DNQQIPLLRAEI-----DGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 155 d~qqipal~aEi-----e~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
-+..|-+-..++ +....+.++.=..+.-.|..+.+..++.
T Consensus 138 rl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 138 RLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.78 E-value=1.7e+02 Score=25.87 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
++|..+..+|........ +...+..++.+|.+++.+.+. +++.=+.+|...|++|..-+..-...+
T Consensus 5 ~~L~~~d~~L~~~L~~l~--------~hq~~~~~I~~L~~e~~~ld~------~i~~~~~~L~~~~~~L~~~~~~~~~~~ 70 (188)
T PF10018_consen 5 EDLIEADDELSSALEELQ--------EHQENQARIQQLRAEIEELDE------QIRDILKQLKEARKELRTLPDQADEKL 70 (188)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhcc
Done!