Query 039268
Match_columns 276
No_of_seqs 90 out of 101
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 13:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 97.0 0.12 4E-06 46.0 20.0 118 61-182 30-150 (256)
2 2dfs_A Myosin-5A; myosin-V, in 97.0 0.019 6.5E-07 61.2 16.8 123 55-184 920-1043(1080)
3 3na7_A HP0958; flagellar bioge 96.9 0.083 2.8E-06 47.0 18.2 22 66-87 28-49 (256)
4 3oja_B Anopheles plasmodium-re 96.7 0.04 1.4E-06 53.0 15.1 29 161-189 534-562 (597)
5 1i84_S Smooth muscle myosin he 96.3 0.017 6E-07 61.4 11.0 82 67-155 861-942 (1184)
6 3ol1_A Vimentin; structural ge 95.8 0.2 7E-06 40.4 12.7 48 106-153 56-103 (119)
7 2dfs_A Myosin-5A; myosin-V, in 95.7 0.28 9.7E-06 52.3 16.5 58 117-180 989-1046(1080)
8 3oja_B Anopheles plasmodium-re 95.6 0.18 6.1E-06 48.4 13.7 49 170-218 529-577 (597)
9 3vkg_A Dynein heavy chain, cyt 95.6 0.43 1.5E-05 56.3 18.7 60 162-221 2012-2071(3245)
10 3o0z_A RHO-associated protein 95.6 0.52 1.8E-05 40.7 14.9 64 88-154 41-111 (168)
11 3swk_A Vimentin; cytoskeleton, 95.4 0.11 3.6E-06 40.1 9.1 79 67-152 4-82 (86)
12 3vkg_A Dynein heavy chain, cyt 94.6 4.1 0.00014 48.4 22.8 43 38-80 1906-1951(3245)
13 2v71_A Nuclear distribution pr 94.6 2.2 7.6E-05 37.4 18.2 93 68-166 22-114 (189)
14 2no2_A HIP-I, huntingtin-inter 94.5 0.84 2.9E-05 36.4 12.5 78 117-194 13-91 (107)
15 2fxo_A Myosin heavy chain, car 94.2 1.8 6.1E-05 35.0 15.4 111 95-211 13-123 (129)
16 2v71_A Nuclear distribution pr 92.8 1.4 4.8E-05 38.6 11.8 38 41-78 48-85 (189)
17 3ghg_A Fibrinogen alpha chain; 92.5 0.72 2.5E-05 46.2 10.6 64 115-181 92-155 (562)
18 1wt6_A Myotonin-protein kinase 92.3 0.52 1.8E-05 36.5 7.4 44 105-148 17-60 (81)
19 3tnu_B Keratin, type II cytosk 92.1 1.9 6.6E-05 34.7 11.0 23 70-92 29-51 (129)
20 3ol1_A Vimentin; structural ge 91.2 4.9 0.00017 32.2 12.7 50 97-149 29-78 (119)
21 1x79_B RAB GTPase binding effe 91.1 2.4 8.3E-05 34.4 10.5 86 65-156 15-100 (112)
22 3o0z_A RHO-associated protein 91.1 7 0.00024 33.7 18.4 117 84-205 17-138 (168)
23 3tnu_A Keratin, type I cytoske 91.1 2.5 8.5E-05 34.2 10.7 24 70-93 31-54 (131)
24 2v4h_A NF-kappa-B essential mo 90.8 3.7 0.00013 33.3 11.2 81 67-158 28-108 (110)
25 3swk_A Vimentin; cytoskeleton, 90.3 3.6 0.00012 31.4 10.4 44 136-189 3-46 (86)
26 3iox_A AGI/II, PA; alpha helix 89.9 6.1 0.00021 39.2 14.2 58 66-126 5-62 (497)
27 3plt_A Sphingolipid long chain 89.4 9.7 0.00033 34.4 14.0 94 92-194 87-180 (234)
28 1x79_B RAB GTPase binding effe 89.1 5.5 0.00019 32.3 11.0 95 115-218 9-103 (112)
29 2w6b_A RHO guanine nucleotide 88.9 1.2 4.1E-05 32.2 6.2 39 159-197 12-50 (56)
30 2xnx_M M protein, M1-BC1; cell 88.3 5 0.00017 34.0 10.6 63 115-180 69-131 (146)
31 3hnw_A Uncharacterized protein 88.3 6.9 0.00023 32.3 11.4 59 92-150 36-99 (138)
32 1deq_A Fibrinogen (alpha chain 88.3 19 0.00065 34.7 20.2 80 87-182 80-159 (390)
33 1l8d_A DNA double-strand break 88.2 3.2 0.00011 31.9 8.9 98 114-216 5-102 (112)
34 3ghg_A Fibrinogen alpha chain; 88.0 5.4 0.00019 40.0 12.3 72 85-156 75-154 (562)
35 1m1j_B Fibrinogen beta chain; 87.6 3.4 0.00012 40.6 10.6 22 159-180 170-191 (464)
36 2fxo_A Myosin heavy chain, car 87.6 9.8 0.00033 30.6 15.6 89 104-195 8-96 (129)
37 2w83_C C-JUN-amino-terminal ki 87.4 1.4 4.7E-05 33.8 6.0 35 117-151 42-76 (77)
38 3mq9_A Bone marrow stromal ant 86.9 15 0.0005 34.3 14.2 28 157-184 443-470 (471)
39 2v4h_A NF-kappa-B essential mo 86.5 7.1 0.00024 31.7 10.1 66 138-210 43-108 (110)
40 4dzn_A Coiled-coil peptide CC- 86.5 1.2 4.1E-05 28.5 4.4 28 64-91 3-30 (33)
41 3jsv_C NF-kappa-B essential mo 86.5 4.6 0.00016 31.9 8.8 59 99-157 27-85 (94)
42 1jcd_A Major outer membrane li 86.1 2.4 8.1E-05 30.1 6.4 21 161-181 29-49 (52)
43 2ocy_A RAB guanine nucleotide 85.9 7.7 0.00026 33.0 10.6 34 101-137 12-45 (154)
44 3i00_A HIP-I, huntingtin-inter 85.8 6.6 0.00023 31.9 9.8 35 75-109 20-54 (120)
45 3a7p_A Autophagy protein 16; c 85.4 11 0.00037 32.1 11.2 50 159-214 98-147 (152)
46 1deq_A Fibrinogen (alpha chain 85.4 18 0.0006 35.0 13.9 43 173-215 115-157 (390)
47 3tnu_A Keratin, type I cytoske 85.1 13 0.00046 29.8 12.6 15 44-58 15-29 (131)
48 3tnu_B Keratin, type II cytosk 85.1 13 0.00045 29.7 12.6 20 70-89 36-55 (129)
49 3i00_A HIP-I, huntingtin-inter 85.0 5.1 0.00017 32.6 8.8 72 89-176 9-80 (120)
50 3lay_A Zinc resistance-associa 84.7 4.1 0.00014 35.0 8.5 25 154-178 110-134 (175)
51 1gk4_A Vimentin; intermediate 84.6 11 0.00037 28.4 11.0 31 79-109 10-40 (84)
52 3bas_A Myosin heavy chain, str 84.4 12 0.0004 28.5 10.7 65 105-179 10-74 (89)
53 1use_A VAsp, vasodilator-stimu 84.3 2.1 7.2E-05 29.7 5.2 33 131-175 9-41 (45)
54 3s4r_A Vimentin; alpha-helix, 84.1 12 0.00041 28.9 10.1 15 138-152 61-75 (93)
55 4dk0_A Putative MACA; alpha-ha 83.7 6.2 0.00021 35.3 9.6 92 117-222 68-159 (369)
56 2d1l_A Metastasis suppressor p 82.9 19 0.00065 32.5 12.5 53 163-217 180-232 (253)
57 2jee_A YIIU; FTSZ, septum, coi 82.4 7.8 0.00027 29.8 8.3 58 93-153 11-68 (81)
58 4e61_A Protein BIM1; EB1-like 81.9 6.1 0.00021 31.8 7.9 58 111-175 3-60 (106)
59 3s9g_A Protein hexim1; cyclin 81.0 5 0.00017 32.1 7.0 48 99-156 34-81 (104)
60 2efk_A CDC42-interacting prote 80.6 28 0.00094 30.2 17.7 19 54-72 74-92 (301)
61 3jsv_C NF-kappa-B essential mo 80.5 18 0.00061 28.6 9.9 85 68-156 7-91 (94)
62 3fpp_A Macrolide-specific effl 80.4 9 0.00031 33.9 9.4 62 117-178 67-128 (341)
63 2w6a_A ARF GTPase-activating p 78.7 5.9 0.0002 29.1 6.1 43 116-158 17-59 (63)
64 3m91_A Proteasome-associated A 77.7 2.9 0.0001 29.5 4.2 43 41-83 8-50 (51)
65 1m1j_C Fibrinogen gamma chain; 77.2 24 0.00081 34.0 11.7 32 107-138 36-67 (409)
66 3q8t_A Beclin-1; autophagy, AT 77.1 23 0.0008 27.3 14.3 26 187-212 69-94 (96)
67 1go4_E MAD1 (mitotic arrest de 76.6 12 0.00041 29.7 7.9 21 199-219 75-95 (100)
68 1hjb_A Ccaat/enhancer binding 76.4 8.2 0.00028 29.8 6.8 53 109-161 26-78 (87)
69 3lay_A Zinc resistance-associa 76.1 15 0.00052 31.5 9.1 21 159-179 87-107 (175)
70 3onj_A T-snare VTI1; helix, HA 75.8 25 0.00084 27.0 9.9 82 68-159 6-92 (97)
71 1gu4_A CAAT/enhancer binding p 75.7 9.3 0.00032 28.9 6.8 53 108-160 25-77 (78)
72 1wle_A Seryl-tRNA synthetase; 75.1 27 0.00091 34.3 11.7 34 113-146 71-104 (501)
73 3l4f_A RHO guanine nucleotide 75.1 8.6 0.00029 28.2 6.2 42 159-207 9-50 (61)
74 2e7s_A RAB guanine nucleotide 75.1 2.7 9.2E-05 35.2 4.0 14 208-221 105-118 (135)
75 3mq7_A Bone marrow stromal ant 73.9 36 0.0012 27.9 11.4 14 162-175 76-89 (121)
76 3haj_A Human pacsin2 F-BAR; pa 73.9 63 0.0022 30.8 17.9 41 116-156 78-119 (486)
77 3mov_A Lamin-B1; LMNB1, B-type 72.3 16 0.00053 28.4 7.6 16 94-109 36-51 (95)
78 3hnw_A Uncharacterized protein 71.9 40 0.0014 27.7 11.1 43 162-204 87-129 (138)
79 1s94_A S-syntaxin; three helix 71.8 41 0.0014 27.7 10.7 114 70-199 43-166 (180)
80 3m9b_A Proteasome-associated A 71.6 3.9 0.00013 37.4 4.5 43 41-83 53-95 (251)
81 1joc_A EEA1, early endosomal a 71.6 19 0.00065 28.8 8.2 43 96-141 5-47 (125)
82 2no2_A HIP-I, huntingtin-inter 71.1 37 0.0012 26.9 13.9 29 104-132 46-74 (107)
83 3s4r_A Vimentin; alpha-helix, 70.8 34 0.0011 26.3 10.3 36 118-153 55-90 (93)
84 2zqm_A Prefoldin beta subunit 70.6 18 0.00062 27.6 7.6 28 191-218 83-110 (117)
85 2xnx_M M protein, M1-BC1; cell 69.8 2.6 9.1E-05 35.7 2.8 37 123-159 98-134 (146)
86 4dci_A Uncharacterized protein 69.6 18 0.00063 30.5 7.9 81 115-196 24-105 (150)
87 2ke4_A CDC42-interacting prote 68.8 9.2 0.00032 30.0 5.6 19 198-216 61-79 (98)
88 2eqb_B RAB guanine nucleotide 68.4 34 0.0012 27.0 8.8 87 116-219 2-96 (97)
89 1vcs_A Vesicle transport throu 68.2 31 0.0011 26.6 8.5 24 134-157 68-91 (102)
90 1cii_A Colicin IA; bacteriocin 67.7 1E+02 0.0035 30.9 13.7 60 117-179 354-413 (602)
91 2iaz_A Hypothetical protein SP 66.9 38 0.0013 25.8 8.8 101 97-211 2-103 (113)
92 1uix_A RHO-associated kinase; 66.1 39 0.0013 25.3 8.6 58 124-197 2-59 (71)
93 4dk0_A Putative MACA; alpha-ha 66.0 33 0.0011 30.5 9.4 16 165-180 137-152 (369)
94 3okq_A BUD site selection prot 66.0 59 0.002 27.3 12.8 96 123-218 18-119 (141)
95 3htk_A Structural maintenance 65.2 31 0.001 23.7 8.2 19 164-182 40-58 (60)
96 1g6u_A Domain swapped dimer; d 65.1 20 0.00068 24.6 5.9 45 159-211 2-46 (48)
97 3q8t_A Beclin-1; autophagy, AT 64.8 46 0.0016 25.6 13.6 19 164-182 74-92 (96)
98 3u1c_A Tropomyosin alpha-1 cha 64.8 46 0.0016 25.7 12.6 24 164-187 58-81 (101)
99 2jee_A YIIU; FTSZ, septum, coi 64.7 28 0.00094 26.7 7.3 39 180-218 29-67 (81)
100 1jcd_A Major outer membrane li 64.6 30 0.001 24.4 7.0 21 136-156 14-34 (52)
101 3kqg_A Langerin, C-type lectin 64.2 5.5 0.00019 32.1 3.6 16 138-153 4-19 (182)
102 2j69_A Bacterial dynamin-like 63.8 64 0.0022 32.3 11.9 85 131-217 605-690 (695)
103 3m91_A Proteasome-associated A 63.3 15 0.00051 25.8 5.2 27 102-131 23-49 (51)
104 3vp9_A General transcriptional 62.7 15 0.00052 28.8 5.7 43 114-156 16-59 (92)
105 3fpp_A Macrolide-specific effl 62.7 33 0.0011 30.3 8.7 9 119-127 114-122 (341)
106 2yy0_A C-MYC-binding protein; 62.4 11 0.00038 26.5 4.4 26 115-140 22-47 (53)
107 3qne_A Seryl-tRNA synthetase, 62.3 19 0.00065 35.4 7.6 31 115-145 36-66 (485)
108 1use_A VAsp, vasodilator-stimu 62.1 12 0.00041 25.9 4.4 27 147-175 7-33 (45)
109 2dq0_A Seryl-tRNA synthetase; 61.5 22 0.00074 34.4 7.7 28 117-144 36-63 (455)
110 3abh_A Pacsin2, protein kinase 61.2 85 0.0029 27.5 15.6 40 116-155 85-125 (312)
111 2pih_A Protein YMCA; regulate 61.1 67 0.0023 26.3 11.6 104 97-214 6-111 (151)
112 1ci6_A Transcription factor AT 59.9 35 0.0012 24.3 6.8 42 112-153 16-57 (63)
113 2w83_C C-JUN-amino-terminal ki 59.7 56 0.0019 24.9 8.5 52 117-178 14-65 (77)
114 3vp9_A General transcriptional 59.7 9.8 0.00033 29.9 4.1 60 159-219 16-88 (92)
115 2v66_B Nuclear distribution pr 59.6 20 0.00067 28.9 6.0 48 71-118 60-107 (111)
116 2i1j_A Moesin; FERM, coiled-co 59.4 8 0.00027 38.4 4.4 86 63-148 297-399 (575)
117 1t2k_D Cyclic-AMP-dependent tr 59.3 39 0.0013 23.7 6.9 36 117-152 20-55 (61)
118 1s94_A S-syntaxin; three helix 59.2 52 0.0018 27.1 8.8 27 192-218 126-152 (180)
119 1ez3_A Syntaxin-1A; three heli 59.2 58 0.002 24.9 11.6 67 70-150 12-78 (127)
120 3mq7_A Bone marrow stromal ant 58.5 75 0.0026 26.0 12.7 30 135-174 73-102 (121)
121 3oja_A Leucine-rich immune mol 58.4 1.2E+02 0.004 28.3 14.6 33 164-196 417-449 (487)
122 4dyl_A Tyrosine-protein kinase 57.7 1.2E+02 0.0042 28.2 15.1 19 189-207 208-226 (406)
123 2js5_A Uncharacterized protein 57.7 33 0.0011 25.7 6.5 58 120-180 4-61 (71)
124 3r4h_A Coiled coil helix CC-TE 57.6 15 0.0005 23.6 3.9 25 66-90 5-29 (34)
125 2efk_A CDC42-interacting prote 57.1 94 0.0032 26.7 18.2 68 120-187 70-139 (301)
126 3lss_A Seryl-tRNA synthetase; 57.0 57 0.0019 32.0 9.9 35 113-147 38-72 (484)
127 4gkw_A Spindle assembly abnorm 56.9 89 0.003 26.4 16.4 38 155-192 96-140 (167)
128 3csx_A Putative uncharacterize 56.6 31 0.0011 26.5 6.3 59 120-181 16-74 (81)
129 1ses_A Seryl-tRNA synthetase; 56.5 26 0.00088 33.4 7.2 27 116-142 32-58 (421)
130 2ocy_A RAB guanine nucleotide 56.0 93 0.0032 26.3 18.9 136 64-219 14-149 (154)
131 3ibp_A Chromosome partition pr 55.9 1.3E+02 0.0045 28.0 12.5 99 61-164 15-115 (302)
132 3bas_A Myosin heavy chain, str 55.7 64 0.0022 24.3 9.3 43 96-141 15-57 (89)
133 3i2w_A Syndapin, LD46328P; EFC 55.4 1E+02 0.0035 26.6 11.5 41 116-156 64-105 (290)
134 2a3d_A Protein (de novo three- 54.9 45 0.0016 24.5 6.7 36 142-177 28-71 (73)
135 1m1j_B Fibrinogen beta chain; 54.6 1.6E+02 0.0056 28.7 14.1 11 63-73 82-92 (464)
136 1f5n_A Interferon-induced guan 54.6 1.8E+02 0.006 29.1 14.9 91 36-132 457-550 (592)
137 1m1j_A Fibrinogen alpha subuni 54.5 1.7E+02 0.0059 29.0 14.1 46 172-217 112-157 (491)
138 1gd2_E Transcription factor PA 54.5 15 0.00053 27.2 4.2 23 87-109 21-43 (70)
139 1x8y_A Lamin A/C; structural p 54.4 42 0.0014 25.2 6.8 50 95-147 28-77 (86)
140 2wt7_A Proto-oncogene protein 54.4 30 0.001 24.5 5.7 15 164-178 44-58 (63)
141 2yy0_A C-MYC-binding protein; 53.8 25 0.00086 24.6 5.0 24 130-153 23-46 (53)
142 2dq0_A Seryl-tRNA synthetase; 53.5 90 0.0031 30.0 10.6 52 119-170 31-82 (455)
143 3mov_A Lamin-B1; LMNB1, B-type 53.4 43 0.0015 25.9 6.9 20 95-114 12-31 (95)
144 3s9g_A Protein hexim1; cyclin 52.5 75 0.0026 25.4 8.1 23 157-179 65-87 (104)
145 2wt7_A Proto-oncogene protein 52.4 55 0.0019 23.1 6.8 36 118-153 22-57 (63)
146 2qyw_A Vesicle transport throu 52.3 78 0.0027 24.4 9.6 36 121-156 65-101 (102)
147 4dzn_A Coiled-coil peptide CC- 52.2 21 0.00072 22.8 3.9 14 160-173 5-18 (33)
148 1y1u_A Signal transducer and a 52.2 56 0.0019 32.9 9.1 38 116-157 23-60 (585)
149 3haj_A Human pacsin2 F-BAR; pa 52.1 1.6E+02 0.0055 27.9 17.2 21 187-207 226-246 (486)
150 2ve7_A Kinetochore protein HEC 51.9 17 0.00059 33.4 5.0 46 153-201 181-226 (315)
151 3aco_A Pacsin2, protein kinase 51.4 1.4E+02 0.0046 26.8 14.5 40 116-155 85-125 (350)
152 3viq_A SWI5-dependent recombin 51.1 17 0.00059 29.5 4.4 45 160-207 10-54 (122)
153 4emc_A Monopolin complex subun 51.0 20 0.00067 31.5 5.0 49 38-86 9-57 (190)
154 1jnm_A Proto-oncogene C-JUN; B 50.6 24 0.00084 24.8 4.7 35 118-152 21-55 (62)
155 2wt7_B Transcription factor MA 50.6 48 0.0016 25.8 6.6 33 132-174 54-86 (90)
156 3qne_A Seryl-tRNA synthetase, 50.2 1.1E+02 0.0039 29.9 10.8 48 120-167 34-81 (485)
157 2bsg_A Fibritin; viral protein 50.1 1.4E+02 0.0049 29.5 11.5 143 65-218 49-224 (487)
158 2a3d_A Protein (de novo three- 50.1 33 0.0011 25.2 5.3 56 67-130 6-69 (73)
159 1hjb_A Ccaat/enhancer binding 49.6 54 0.0018 25.2 6.8 33 146-181 42-74 (87)
160 3a7o_A Autophagy protein 16; c 49.5 72 0.0024 24.1 7.2 33 55-87 10-42 (75)
161 4b6x_A AVRRPS4, avirulence pro 49.4 60 0.0021 25.2 6.9 34 142-180 38-71 (90)
162 2w6b_A RHO guanine nucleotide 49.3 50 0.0017 23.7 6.0 29 59-87 6-34 (56)
163 3iv1_A Tumor susceptibility ge 49.2 84 0.0029 23.8 8.4 52 163-214 17-68 (78)
164 2oeq_A Protein of unknown func 49.0 49 0.0017 25.9 6.7 100 98-211 6-106 (122)
165 1bg1_A Protein (transcription 49.0 1.6E+02 0.0054 29.8 11.8 84 67-154 24-107 (596)
166 1fxk_A Prefoldin; archaeal pro 48.8 80 0.0027 23.5 11.0 24 192-215 79-102 (107)
167 3a7p_A Autophagy protein 16; c 48.7 1.2E+02 0.0042 25.6 11.3 36 113-148 97-132 (152)
168 3oa7_A Head morphogenesis prot 48.1 28 0.00096 30.9 5.5 24 121-144 32-55 (206)
169 3u59_A Tropomyosin beta chain; 47.6 92 0.0031 23.8 12.5 24 164-187 58-81 (101)
170 1sjj_A Actinin; 3-helix bundle 47.0 1.3E+02 0.0043 30.2 10.8 36 59-94 407-442 (863)
171 3m9b_A Proteasome-associated A 47.0 19 0.00065 32.8 4.4 34 120-153 62-95 (251)
172 3nmd_A CGMP dependent protein 46.8 87 0.003 23.5 7.3 16 164-179 54-69 (72)
173 3ajw_A Flagellar FLIJ protein; 46.6 1E+02 0.0035 24.0 12.3 43 157-199 74-116 (150)
174 2xdj_A Uncharacterized protein 46.5 93 0.0032 23.5 8.2 28 155-182 18-45 (83)
175 4fla_A Regulation of nuclear P 46.1 79 0.0027 26.4 7.8 21 62-82 38-58 (152)
176 3iv1_A Tumor susceptibility ge 46.1 95 0.0033 23.5 9.2 41 116-156 15-58 (78)
177 2eqb_B RAB guanine nucleotide 45.8 1.1E+02 0.0037 24.1 12.9 21 68-88 3-23 (97)
178 1wt6_A Myotonin-protein kinase 45.1 1E+02 0.0035 23.6 8.3 6 125-130 20-25 (81)
179 3c98_B Syntaxin-1A; protein co 45.0 38 0.0013 28.4 5.8 29 115-143 81-109 (279)
180 3ra3_B P2F; coiled coil domain 44.9 23 0.00078 21.9 3.1 23 60-82 4-26 (28)
181 3kqg_A Langerin, C-type lectin 44.7 16 0.00056 29.3 3.3 14 139-152 22-35 (182)
182 1ik9_A DNA repair protein XRCC 44.7 1.6E+02 0.0054 25.7 12.5 73 97-192 123-195 (213)
183 1t2k_D Cyclic-AMP-dependent tr 44.6 54 0.0018 22.9 5.7 17 162-178 41-57 (61)
184 1gu4_A CAAT/enhancer binding p 44.5 70 0.0024 24.0 6.6 35 143-180 39-73 (78)
185 2nrj_A HBL B protein; enteroto 44.5 1.9E+02 0.0066 26.6 11.6 69 61-129 121-193 (346)
186 1gd2_E Transcription factor PA 43.4 53 0.0018 24.2 5.7 13 162-174 55-67 (70)
187 3ghg_B Fibrinogen beta chain; 43.2 1.6E+02 0.0055 28.9 10.6 28 191-218 162-189 (461)
188 1m1j_C Fibrinogen gamma chain; 43.2 1.3E+02 0.0046 28.8 9.9 48 167-221 87-134 (409)
189 1fxk_C Protein (prefoldin); ar 43.1 1.2E+02 0.004 23.7 11.4 43 127-169 2-44 (133)
190 3abh_A Pacsin2, protein kinase 42.7 1.7E+02 0.0059 25.5 13.6 36 169-207 218-253 (312)
191 3sjb_C Golgi to ER traffic pro 42.6 26 0.0009 27.5 4.0 24 158-181 57-80 (93)
192 1cxz_B Protein (PKN); protein- 41.8 1.2E+02 0.004 23.4 8.2 37 93-129 36-73 (86)
193 3pwx_A Putative flagellar HOOK 41.8 1.7E+02 0.0058 25.4 9.7 72 103-174 12-86 (239)
194 3hhm_B NISH2 P85alpha; PI3KCA, 41.8 2.3E+02 0.0078 26.7 14.4 58 119-179 198-255 (373)
195 3u06_A Protein claret segregat 41.7 78 0.0027 30.1 8.0 35 115-149 6-40 (412)
196 2d4x_A Flagellar HOOK-associat 41.4 1.1E+02 0.0038 26.2 8.3 46 103-148 10-55 (248)
197 3iox_A AGI/II, PA; alpha helix 41.3 2.8E+02 0.0095 27.6 14.2 98 117-220 7-108 (497)
198 2nrj_A HBL B protein; enteroto 41.1 65 0.0022 29.9 7.2 60 115-174 126-193 (346)
199 3fx0_A NF-kappa-B essential mo 41.1 49 0.0017 26.2 5.4 40 142-181 40-79 (96)
200 1t3j_A Mitofusin 1; coiled coi 41.0 98 0.0033 24.3 7.1 26 84-109 43-68 (96)
201 3mq9_A Bone marrow stromal ant 40.9 2.2E+02 0.0075 26.3 15.4 20 158-177 451-470 (471)
202 2dq3_A Seryl-tRNA synthetase; 40.6 26 0.00088 33.4 4.5 25 119-143 37-61 (425)
203 4emc_A Monopolin complex subun 40.4 1.2E+02 0.004 26.6 8.2 48 117-181 11-58 (190)
204 2qag_C Septin-7; cell cycle, c 39.4 6.2 0.00021 37.5 0.0 74 97-185 324-397 (418)
205 2efl_A Formin-binding protein 38.6 1.9E+02 0.0064 24.7 18.7 67 121-187 78-146 (305)
206 3he5_B Synzip2; heterodimeric 38.4 97 0.0033 21.4 5.9 41 178-218 10-50 (52)
207 1wle_A Seryl-tRNA synthetase; 38.3 2.1E+02 0.0073 27.9 10.7 34 119-152 70-103 (501)
208 2lw1_A ABC transporter ATP-bin 38.0 42 0.0014 25.1 4.5 55 118-176 21-75 (89)
209 3cl3_D NF-kappa-B essential mo 38.0 38 0.0013 28.1 4.5 70 117-186 7-84 (130)
210 1hci_A Alpha-actinin 2; triple 38.0 2.4E+02 0.008 25.7 16.4 35 59-93 168-202 (476)
211 3oja_A Leucine-rich immune mol 37.8 2.5E+02 0.0086 26.0 17.7 31 165-195 450-480 (487)
212 2zuo_A MVP, major vault protei 37.3 4E+02 0.014 28.2 17.5 23 61-83 671-694 (861)
213 1lwu_C Fibrinogen gamma chain; 37.2 74 0.0025 29.7 6.9 13 97-109 7-19 (323)
214 2v0o_A FCHO2, FCH domain only 36.9 1.9E+02 0.0065 24.4 16.8 18 55-72 79-96 (276)
215 2f1m_A Acriflavine resistance 36.8 1.9E+02 0.0066 24.4 9.9 78 117-222 58-135 (277)
216 3lnr_A Aerotaxis transducer AE 36.6 1.8E+02 0.0061 23.9 8.8 62 156-217 65-130 (175)
217 2fcw_A Alpha-2-macroglobulin r 36.2 1.7E+02 0.0057 23.5 10.3 25 194-218 76-100 (109)
218 3hhm_B NISH2 P85alpha; PI3KCA, 35.8 90 0.0031 29.4 7.3 12 37-48 170-181 (373)
219 1ci6_A Transcription factor AT 34.4 75 0.0026 22.5 5.1 19 161-179 41-59 (63)
220 2i1j_A Moesin; FERM, coiled-co 34.4 66 0.0022 31.9 6.4 21 74-94 297-317 (575)
221 2efl_A Formin-binding protein 34.3 2.2E+02 0.0075 24.3 19.5 20 188-207 215-234 (305)
222 2xv5_A Lamin-A/C; structural p 34.2 1.4E+02 0.0048 22.1 7.0 34 129-162 8-41 (74)
223 1yvl_A Signal transducer and a 33.8 3.3E+02 0.011 28.0 11.5 40 115-154 190-229 (683)
224 2v66_B Nuclear distribution pr 33.8 1.8E+02 0.0062 23.2 14.5 69 94-175 2-70 (111)
225 2dq3_A Seryl-tRNA synthetase; 33.3 83 0.0028 29.9 6.7 48 119-166 30-77 (425)
226 1a93_B MAX protein, coiled coi 32.8 48 0.0016 21.7 3.4 30 169-198 5-34 (34)
227 3ibp_A Chromosome partition pr 32.7 2.6E+02 0.0089 26.1 9.7 13 119-131 24-36 (302)
228 1xaw_A Occludin; coiled-coil, 32.5 1.7E+02 0.0057 24.4 7.6 35 142-176 68-102 (140)
229 2dgc_A Protein (GCN4); basic d 31.8 87 0.003 22.3 5.1 9 164-172 51-59 (63)
230 3viq_A SWI5-dependent recombin 31.6 88 0.003 25.3 5.7 21 128-148 45-65 (122)
231 1ic2_A Tropomyosin alpha chain 31.4 1.5E+02 0.0052 21.6 8.2 62 157-218 6-67 (81)
232 1t3j_A Mitofusin 1; coiled coi 31.2 1.4E+02 0.0047 23.4 6.5 47 80-126 32-78 (96)
233 1jnm_A Proto-oncogene C-JUN; B 30.9 58 0.002 22.9 4.0 15 163-177 42-56 (62)
234 1yhn_B RILP, RAB interacting l 30.7 1.6E+02 0.0055 21.6 7.0 52 127-180 4-58 (65)
235 1a93_B MAX protein, coiled coi 30.6 71 0.0024 20.8 4.0 20 68-87 5-24 (34)
236 1fzc_C Fibrin; blood coagulati 30.6 62 0.0021 30.1 5.2 44 100-146 2-45 (319)
237 3v47_C Flagellin; innate immun 30.6 1.6E+02 0.0053 28.6 8.2 77 102-178 8-87 (425)
238 3fhn_A Protein transport prote 30.5 2.9E+02 0.01 28.4 10.5 47 120-166 11-57 (706)
239 3trt_A Vimentin; cytoskeleton, 30.4 1.5E+02 0.0051 21.2 8.6 7 167-173 66-72 (77)
240 2zvf_A Alanyl-tRNA synthetase; 30.3 74 0.0025 25.6 5.1 26 190-215 30-55 (171)
241 1s1c_X RHO-associated, coiled- 30.1 1.7E+02 0.0058 21.8 8.8 56 124-197 4-59 (71)
242 1bb1_B Designed, thermostable 30.0 81 0.0028 20.4 4.1 25 66-90 5-29 (36)
243 4fla_A Regulation of nuclear P 29.4 2.4E+02 0.0083 23.3 9.5 29 120-148 111-139 (152)
244 1bf5_A Signal transducer and a 29.3 4.5E+02 0.016 26.4 12.5 81 67-153 13-93 (575)
245 1qvr_A CLPB protein; coiled co 29.3 3.7E+02 0.013 27.2 11.1 29 157-185 430-458 (854)
246 3u1c_A Tropomyosin alpha-1 cha 29.2 1.9E+02 0.0066 22.1 13.7 35 117-151 7-41 (101)
247 1lwu_C Fibrinogen gamma chain; 28.8 1.3E+02 0.0043 28.1 7.0 8 102-109 5-12 (323)
248 1ez3_A Syntaxin-1A; three heli 28.7 1.9E+02 0.0066 21.9 13.1 32 97-128 7-38 (127)
249 3k8w_A Flagellin homolog; flag 28.3 3.4E+02 0.012 25.3 9.8 74 102-175 29-105 (326)
250 3l4q_C Phosphatidylinositol 3- 28.2 2.8E+02 0.0096 23.6 8.6 19 164-182 38-56 (170)
251 1quu_A Human skeletal muscle a 28.0 2.7E+02 0.0091 23.3 14.7 33 60-92 52-84 (250)
252 1go4_E MAD1 (mitotic arrest de 27.8 2.2E+02 0.0076 22.4 8.3 61 120-180 13-91 (100)
253 2rjz_A PILO protein; structura 27.6 1.8E+02 0.0063 23.5 7.0 36 145-180 3-38 (147)
254 3gp4_A Transcriptional regulat 27.5 2.3E+02 0.008 22.5 7.8 31 117-147 86-116 (142)
255 2x3v_A Syndapin I, protein kin 27.1 3.2E+02 0.011 24.0 18.9 40 117-156 77-117 (337)
256 3q0x_A Centriole protein; cent 27.1 1.2E+02 0.0042 27.0 6.3 36 117-152 176-211 (228)
257 3fx7_A Putative uncharacterize 26.9 2.3E+02 0.0077 22.1 9.1 50 167-216 23-80 (94)
258 2ve7_C Kinetochore protein NUF 26.6 56 0.0019 29.1 4.0 13 117-129 153-165 (250)
259 2xdj_A Uncharacterized protein 26.2 2.1E+02 0.0072 21.5 9.4 33 117-149 32-64 (83)
260 1yvl_A Signal transducer and a 25.9 5.5E+02 0.019 26.4 11.5 39 136-174 140-178 (683)
261 3l4q_C Phosphatidylinositol 3- 25.9 3.1E+02 0.011 23.4 10.6 54 115-178 92-145 (170)
262 1ucu_A Phase 1 flagellin; flag 25.5 3.3E+02 0.011 26.2 9.6 79 101-179 47-128 (494)
263 2jn6_A Protein CGL2762, transp 25.5 11 0.00038 27.6 -0.7 30 161-190 63-92 (97)
264 2de0_X Alpha-(1,6)-fucosyltran 25.4 3.5E+02 0.012 26.5 9.7 46 36-82 20-67 (526)
265 3cve_A Homer protein homolog 1 25.4 2.1E+02 0.0072 21.3 6.9 27 127-153 8-34 (72)
266 3u06_A Protein claret segregat 25.2 1.8E+02 0.0062 27.6 7.5 25 63-87 3-27 (412)
267 3sja_C Golgi to ER traffic pro 25.1 1.8E+02 0.0062 21.3 5.8 21 162-182 37-57 (65)
268 1ses_A Seryl-tRNA synthetase; 24.8 3.6E+02 0.012 25.4 9.5 24 130-153 32-55 (421)
269 2lf0_A Uncharacterized protein 24.8 1.5E+02 0.0052 24.3 5.9 43 141-183 18-62 (123)
270 2ve7_C Kinetochore protein NUF 24.6 39 0.0013 30.1 2.6 66 46-111 138-206 (250)
271 1wlq_A Geminin; coiled-coil; 2 24.1 1.7E+02 0.0057 22.5 5.7 32 54-85 36-67 (83)
272 2y39_A Nickel and cobalt resis 23.7 1.6E+02 0.0054 23.9 5.8 41 116-156 42-82 (118)
273 1cii_A Colicin IA; bacteriocin 23.4 4.6E+02 0.016 26.3 10.0 38 116-153 360-397 (602)
274 3uul_A Utrophin; spectrin repe 23.4 2.1E+02 0.0073 20.6 10.2 42 100-141 14-55 (118)
275 3ra3_A P1C; coiled coil domain 22.7 15 0.0005 22.8 -0.4 14 66-79 10-23 (28)
276 2q6q_A Spindle POLE BODY compo 22.7 2.4E+02 0.0084 21.1 6.2 45 65-113 5-49 (74)
277 1uii_A Geminin; human, DNA rep 22.0 77 0.0026 24.4 3.4 35 53-87 43-77 (83)
278 1fzc_A Fibrin; blood coagulati 21.9 1.5E+02 0.0051 23.0 5.0 42 175-216 4-45 (87)
279 2pms_C Pneumococcal surface pr 21.7 3.3E+02 0.011 22.2 11.5 119 61-218 4-122 (125)
280 2oeq_A Protein of unknown func 21.6 1.3E+02 0.0043 23.5 4.8 54 106-163 34-87 (122)
281 2v0o_A FCHO2, FCH domain only 21.5 3.6E+02 0.012 22.6 18.8 88 65-156 20-110 (276)
282 3trt_A Vimentin; cytoskeleton, 21.5 2.2E+02 0.0077 20.2 8.3 14 165-178 57-70 (77)
283 4e61_A Protein BIM1; EB1-like 21.4 3.1E+02 0.011 21.8 7.6 15 179-193 42-56 (106)
284 2pih_A Protein YMCA; regulate 21.4 3.3E+02 0.011 22.1 9.7 32 98-130 69-100 (151)
285 3lss_A Seryl-tRNA synthetase; 20.7 5.9E+02 0.02 24.8 10.3 35 119-153 37-71 (484)
286 3a2a_A Voltage-gated hydrogen 20.5 2.3E+02 0.0078 20.4 5.4 36 180-215 13-48 (58)
287 1fio_A SSO1 protein; four heli 20.4 3.4E+02 0.012 21.9 11.7 16 117-132 47-62 (196)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.01 E-value=0.12 Score=46.05 Aligned_cols=118 Identities=14% Similarity=0.155 Sum_probs=68.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAE---QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNE 137 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae---~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rqe 137 (276)
|...-..|..+++..+..+..+...+.+++.+ .+..+..+-.++.+.+..+-++-.-| |+..+..|+..+....+.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~k-E~~aL~kEie~~~~~i~~ 108 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSER-ELRSLNIEEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSS-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHH-HHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555444 45777788888888888776665444 666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
|..++..++..+...+.++ ..+.++++.++.++...++.++-
T Consensus 109 lE~eile~~e~ie~~~~~l---~~~~~~l~~~~~~l~~~~~~~~~ 150 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQ---EDLKKEMLELEKLALELESLVEN 150 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666655544432 23334445555555544444443
No 2
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.98 E-value=0.019 Score=61.18 Aligned_cols=123 Identities=11% Similarity=0.106 Sum_probs=44.5
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNL 134 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 134 (276)
...|..|-..-..|++.|.....+...|...+..++...+.++-+| +.++...+...+|+.++...+..|...
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLSLQEE 992 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555554444444444444443433333444444 333333333444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcch-hHHHHHHHHHHHHHHHHHhhhhhHH
Q 039268 135 RNELNGKVQTLQKDLAKLQADNQQI-PLLRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 135 RqeL~~qvq~l~~eL~r~~ad~qqi-pal~aEie~lrqElqr~Raa~EyEK 184 (276)
-.+|..+++.+.+|...++...+++ -.|...+..|..|.+.+|..++.-.
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444433332 2444556667777777766655433
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.93 E-value=0.083 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.134 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~ 87 (276)
..|..+|...+.++..+...+.
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~ 49 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAIL 49 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.69 E-value=0.04 Score=52.98 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 161 LLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
+.+.+++.+++|..+.+..++..|+.-.+
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 34455555555555555555554444433
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.32 E-value=0.017 Score=61.44 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
.|+++|...+..+..+...+. +-+.++..|-+...+++.++. ..+.++..+..++..|....++|..+++.+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~----ele~~l~~Le~e~~~l~~~L~---~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELK----ELEQKHTQLCEEKNLLQEKLQ---AETELYAEAEEMRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544443332 333344444444444444333 2334444455555555555556666666555
Q ss_pred HHHHHHHhh
Q 039268 147 KDLAKLQAD 155 (276)
Q Consensus 147 ~eL~r~~ad 155 (276)
.++.....+
T Consensus 934 ~elee~ee~ 942 (1184)
T 1i84_S 934 ARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555444443
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.84 E-value=0.2 Score=40.35 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=39.1
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
|.|.|+.....+..++.-++.++......|-+|-.+|++|+.||.=++
T Consensus 56 KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 56 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777789999999999999999999999999999865544
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.67 E-value=0.28 Score=52.31 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+..|+..++.+++++.....+|..+.+.+..+|+ +++..|..|...|+|++..+-.-+
T Consensus 989 L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~------~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 989 LQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE------QLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544443 344555555555555555555433
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.65 E-value=0.18 Score=48.41 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 170 HQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 170 rqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
+++++.-...++..++-..++-.+.+.|.+.+..+.+|+.++++||...
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444555555566666666666666666665544
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.58 E-value=0.43 Score=56.35 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 162 LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
+++++..+..++..+.+....=++.=.+.-+.++.++.++-...+|.++|..|+..++++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~k 2071 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNK 2071 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666555444455555666666666777777777777666665544
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.57 E-value=0.52 Score=40.75 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=38.5
Q ss_pred HhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 039268 88 EIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLN-------NLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 88 ~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~-------~~RqeL~~qvq~l~~eL~r~~a 154 (276)
...+-.|..+|+|-+++..|++ ..+.|.+|+.++++.+..=- ..-.||.+++++|..||.+...
T Consensus 41 k~~~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 41 KSISQLESLNRELQERNRILEN---SKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566777888888888887 66677777776666433211 1124555566666666555443
No 11
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=95.42 E-value=0.11 Score=40.08 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
-||+.|..+..|-.+|...+..++..-| +=-.|.|.|+..+..+..|+.-++-++..+.-.|-+|-++|++|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~e-------dfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIM-------RLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666555555554433322 234588999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 039268 147 KDLAKL 152 (276)
Q Consensus 147 ~eL~r~ 152 (276)
.||.=+
T Consensus 77 eEl~fL 82 (86)
T 3swk_A 77 EEIAFL 82 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997644
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.56 E-value=4.1 Score=48.41 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhH---HHHHHHHHHHHHHHH
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLVEDR---MAMQRELAAAKEELH 80 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLaatH---vaLrqeLaaaq~Elq 80 (276)
.+|.+|...-...+.||-..=..|..|. ..|+.+|+..+.+|.
T Consensus 1906 ~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~ 1951 (3245)
T 3vkg_A 1906 LLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELD 1951 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666655555565554 334444444444443
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.55 E-value=2.2 Score=37.37 Aligned_cols=93 Identities=24% Similarity=0.303 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
+++.+..++.|+.-+...-..+.+|-|.++-.+=.+...|.. ...-++.|+..++. ++.....+...++..|..
T Consensus 22 ~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~---~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq~ 95 (189)
T 2v71_A 22 YKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA---DNQRLKYEVEALKE---KLEHQYAQSYKQVSVLED 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 467777788888777777777777777666665555555555 34445555555555 445555566666666666
Q ss_pred HHHHHHhhhcchhHHHHHH
Q 039268 148 DLAKLQADNQQIPLLRAEI 166 (276)
Q Consensus 148 eL~r~~ad~qqipal~aEi 166 (276)
|+..++..+.++-.=..+|
T Consensus 96 el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 96 DLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665554444444444
No 14
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=94.55 E-value=0.84 Score=36.45 Aligned_cols=78 Identities=14% Similarity=0.217 Sum_probs=60.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD-LAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e-L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+-+.|-..+.....+...+++|..+++.+..+ ..+++..+.+|-.|+.||+.=..|++++..+++--...+..+..+.
T Consensus 13 ~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 13 VTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666667777888888888887755 6678888999999999999999999998887766666666665555
No 15
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.24 E-value=1.8 Score=35.03 Aligned_cols=111 Identities=21% Similarity=0.314 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 039268 95 VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 95 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElq 174 (276)
-+|+.+-+.+.+|...+...+..+.||.. ...+|...+..|..++++-+.-++-+.--...+-.-+.+++.--.|
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~---~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~e-- 87 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEE---KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKE-- 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444444554444444444444432 2234555555555555554444444444344444444444433333
Q ss_pred HHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 175 HARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 175 r~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
+..-++.+...+.++....+-|+.++-.+-.+++-|
T Consensus 88 -l~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 88 -MNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777776666666654
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.82 E-value=1.4 Score=38.61 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHH
Q 039268 41 EEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEE 78 (276)
Q Consensus 41 Ee~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~E 78 (276)
|..|..-..-+..|-..|.+|......+|..+..++.|
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555566666666666665555555555
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.54 E-value=0.72 Score=46.21 Aligned_cols=64 Identities=16% Similarity=0.310 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
+.|+..+.|..-.-.....+-+||.-+++.|..+ +...+++|-+|+.=|+.++.+|||+=.+|+
T Consensus 92 E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek---VdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 92 EILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK---VIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444422222233333555555555554 333345666666666666666666555543
No 18
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=92.32 E-value=0.52 Score=36.46 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=32.4
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 105 LKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 105 ~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
--|++||++-..+..||-+++++.+.+..--+|--.+-+.+..|
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999998888766555444444444333
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.06 E-value=1.9 Score=34.71 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 039268 70 RELAAAKEELHRMNLVIGEIRAE 92 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae 92 (276)
.+|..++.||..|+..+..++.|
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~e 51 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAE 51 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666644444
No 20
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.16 E-value=4.9 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.403 Sum_probs=22.8
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
+-.+.-..++|+.++ +.++..+...+.-...-.+.|+.+-+.+..+.+++
T Consensus 29 id~~~~e~a~l~lel---dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~l 78 (119)
T 3ol1_A 29 VDQLTNDKARVEVER---DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDV 78 (119)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 333333444555532 23344444444433344445555555555555553
No 21
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.14 E-value=2.4 Score=34.39 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
=+-|+.+|.....|-..|......-+.|.-.||-+|.+++..-|..|. .|++-..|++.+++. .-+.|+..-..
T Consensus 15 ~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~~vq~---qL~~Lt~~Re~ 88 (112)
T 1x79_B 15 LRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKRDVQE---QMAVLMQSREQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 356777788887777777777888888889999999999999998443 355555555554443 12223333333
Q ss_pred HHHHHHHHHhhh
Q 039268 145 LQKDLAKLQADN 156 (276)
Q Consensus 145 l~~eL~r~~ad~ 156 (276)
+..+|.+++.||
T Consensus 89 V~~eL~rLQ~eN 100 (112)
T 1x79_B 89 VSEELVRLQKDN 100 (112)
T ss_dssp HHTC--------
T ss_pred HHHHHHHHHhhc
Confidence 334444555444
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.09 E-value=7 Score=33.73 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhhhhhhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 039268 84 LVIGEIRAEQEVHVRDLVEKGLKLEADLRAT-EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLL 162 (276)
Q Consensus 84 ~~~~~i~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal 162 (276)
-....+++|.|. ..|..|.-+|++.. -.+..-+.-++.=+..|...|.+|-.++..|...|..-+.+-.+...+
T Consensus 17 E~n~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~ 91 (168)
T 3o0z_A 17 EANDLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEM 91 (168)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888775 45667888887743 344444444455566788888888888888888888888888887777
Q ss_pred HHHH----HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHH
Q 039268 163 RAEI----DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMA 205 (276)
Q Consensus 163 ~aEi----e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMa 205 (276)
.+|+ .+|..|+.+.+....-=...+-.+.|.+-.+||--.+|-
T Consensus 92 ~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 92 IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7765 789999999998776666666777777777887665554
No 23
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.09 E-value=2.5 Score=34.19 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQ 93 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~ 93 (276)
.+|..++.||..|+..+..+++|-
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~el 54 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIEL 54 (131)
T ss_dssp ----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777776666554443
No 24
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=90.80 E-value=3.7 Score=33.30 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
-|+..|..|+.=|.-....|..++.| +.++++++-.+.-|++-+.--+.|-..=-+.|..+.++.+.|.
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~e-----------i~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~ 96 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKEE-----------AEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHH
Confidence 35566666665555555555555543 2334555545555555555555555555566666666666666
Q ss_pred HHHHHHHhhhcc
Q 039268 147 KDLAKLQADNQQ 158 (276)
Q Consensus 147 ~eL~r~~ad~qq 158 (276)
.+|..++..+++
T Consensus 97 ~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 97 EQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
No 25
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.28 E-value=3.6 Score=31.40 Aligned_cols=44 Identities=30% Similarity=0.417 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHH
Q 039268 136 NELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIE 189 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 189 (276)
.+|..|+..++.|-+++. .|||+++..+...|.-||.|-..+.+
T Consensus 3 ~eLr~qi~~l~~e~~~l~----------~e~dn~~~~~edfk~KyE~E~~~R~~ 46 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVE----------VERDNLAEDIMRLREKLQEEMLQREE 46 (86)
T ss_dssp HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777766555 67788777777777777766555443
No 26
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=89.93 E-value=6.1 Score=39.22 Aligned_cols=58 Identities=24% Similarity=0.248 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHH
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRA 126 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra 126 (276)
..-+-+|++-|.||-|+....++++++-|.-+.+.-.+.+.++| ..+++|+.=.++.+
T Consensus 5 a~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~a---eNeaikkrNa~aka 62 (497)
T 3iox_A 5 ADYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTA---ENTAIKKRNADAKA 62 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999888888888 44445544443333
No 27
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=89.38 E-value=9.7 Score=34.38 Aligned_cols=94 Identities=18% Similarity=0.269 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHH
Q 039268 92 EQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQ 171 (276)
Q Consensus 92 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrq 171 (276)
.+--++|..+..+...|. ++.+.|.--..+..+|++|..-. =-+.++..+.+||.|+.+++ -.--+.|.++..
T Consensus 87 ~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~-P~s~kl~~LeqELvraEae~---lvaEAqL~n~kR 159 (234)
T 3plt_A 87 DKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKD-PQSTKIPVLEQELVRAEAES---LVAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHh---hHHHHHHHHhHH
Confidence 445678888888888887 66677777777788888876432 33567788888888888776 233356666666
Q ss_pred HHHHHHhhhhhHHhhhHHHHHHH
Q 039268 172 ELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 172 Elqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+.+|.+|.+.=.+-.|.-|.+
T Consensus 160 --~~lKEa~~~~f~Al~E~aEK~ 180 (234)
T 3plt_A 160 --EKLKAAYSYMFDSLRELSEKF 180 (234)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
Confidence 456777777766666665543
No 28
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.08 E-value=5.5 Score=32.29 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQR 194 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 194 (276)
+.|-.++.|++-++.++...|++|....+.-+.| -..||..|..-+++-.+.|.-+|.+|.--| .+-.+|+
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~------~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q---~~vq~qL 79 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSED------SSHQISALVLRAQASEILLEELQQGLSQAK---RDVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 5577788999999999999999999987665555 234567777778888888888888876544 4456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 195 QAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 195 qaMEknlisMarEvEKLRaElana 218 (276)
+..-..--.+..|+.+|.+|=.+-
T Consensus 80 ~~Lt~~Re~V~~eL~rLQ~eNd~L 103 (112)
T 1x79_B 80 AVLMQSREQVSEELVRLQKDNDSL 103 (112)
T ss_dssp HHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccch
Confidence 777777778888888887775443
No 29
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=88.88 E-value=1.2 Score=32.17 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
+=+|+.|+..|+||..+...++|.|.+++-++-.=+.-|
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999999987654444444
No 30
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=88.32 E-value=5 Score=33.99 Aligned_cols=63 Identities=22% Similarity=0.240 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
..++.++...+...+.+.+.-+.|++++..++.|++++..++|-.-+.+ .+|+.+|.-.|.+-
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReAK 131 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREAK 131 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 3455566666666666666666677778888889999988887655555 77888888888774
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.31 E-value=6.9 Score=32.32 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHh--hhhhhhhhhhc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 92 EQEVHVRDLVEK--GLKLEADLRAT---EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLA 150 (276)
Q Consensus 92 e~e~q~R~l~ek--~~KmEAelra~---e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~ 150 (276)
.-|.+|+++-.+ .-.+..+-.++ -.+=.|+.+++.++..|...-+++..++..+..||.
T Consensus 36 ~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 36 YINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777733 66665544333 334457777776666655444444444444444433
No 32
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=88.30 E-value=19 Score=34.75 Aligned_cols=80 Identities=13% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 039268 87 GEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI 166 (276)
Q Consensus 87 ~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi 166 (276)
.....+....++.+++...+--+.....+.+= ..+-.+|..++.-|..- +...++.|-.|+.-|
T Consensus 80 s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~-------------~e~s~eLe~~i~~lk~~---V~~q~~~ir~Lq~~l 143 (390)
T 1deq_A 80 QKNSKDSNTLTKNIVELMRGDFAKANNNDNTF-------------KQINEDLRSRIEILRRK---VIEQVQRINLLQKNV 143 (390)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhccchHHH-------------HHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHH
Confidence 33444556677777776666555444444332 22223333344433332 445555677777777
Q ss_pred HHHHHHHHHHHhhhhh
Q 039268 167 DGLHQELMHARAAVDY 182 (276)
Q Consensus 167 e~lrqElqr~Raa~Ey 182 (276)
+.++-++||+=.+|+|
T Consensus 144 ~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 144 RDQLVDMKRLEVDIDI 159 (390)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888887666644
No 33
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.20 E-value=3.2 Score=31.92 Aligned_cols=98 Identities=15% Similarity=0.241 Sum_probs=57.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
.+.++.++.+++.++.+|...+.++..++..+.+.+.-+..+-.--|.--+.++.-... ..++.-...-.++..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~-----~~i~~~~~~l~~l~~~ 79 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHRE-----ELLSKYHLDLNNSKNT 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHH-----HHHHHHHHHHHHHHHH
Confidence 34567788888888999988999999999999988888776444444433322210000 0111111112222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 039268 194 RQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 194 ~qaMEknlisMarEvEKLRaEla 216 (276)
...++..+...-+++++|+.++.
T Consensus 80 i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 80 LAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666677766665
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.00 E-value=5.4 Score=40.02 Aligned_cols=72 Identities=13% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHHhhhhHHHHHHHHHHhhhhhhhhhhhchh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 85 VIGEIRAEQEVHVRDLVEKGLKLEADLRATEP--------LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 85 ~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~--------lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
.+..-..+.+..++.+++...+=-......+. |+.-++-++.+|+.-....+-|..-|..+..+++|+..|+
T Consensus 75 dlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 75 EYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666677777665433332223333 3333344444444444444555555555555666666554
No 35
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=87.61 E-value=3.4 Score=40.61 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhh
Q 039268 159 IPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~ 180 (276)
|-.|+..++.++..|+.+-..+
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554443
No 36
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=87.60 E-value=9.8 Score=30.61 Aligned_cols=89 Identities=19% Similarity=0.251 Sum_probs=69.6
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhH
Q 039268 104 GLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYE 183 (276)
Q Consensus 104 ~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 183 (276)
+.+-+.+++. +..++.++...+.+....|++|..+...+.++...++..++.--.+-++.+.++.-|+.-+..++..
T Consensus 8 ~~~~e~E~~~---~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~ 84 (129)
T 2fxo_A 8 SAEREKEMAS---MKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84 (129)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455565543 7779999999999999999999999999999999999999888888889998888888777766644
Q ss_pred HhhhHHHHHHHH
Q 039268 184 KKANIELMEQRQ 195 (276)
Q Consensus 184 Kk~~~e~~Eq~q 195 (276)
=+.-.+.++...
T Consensus 85 l~el~~rleeee 96 (129)
T 2fxo_A 85 VKEMNKRLEDEE 96 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 37
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=87.40 E-value=1.4 Score=33.81 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK 151 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r 151 (276)
|-.|-..++.|+..+..+++-|..++..+.+||.|
T Consensus 42 Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 42 LTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444455555555555555555555555555544
No 38
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.92 E-value=15 Score=34.34 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHH
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEK 184 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEK 184 (276)
+.|-.|..||-.+-++|+.+|+.|+.-|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677888888888888888888877544
No 39
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.53 E-value=7.1 Score=31.66 Aligned_cols=66 Identities=20% Similarity=0.377 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 138 LNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEK 210 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEK 210 (276)
-..++..+.+++.+...++-+||.|++.++--+.... -|..++-.+-+-...++..+-++-+++.+
T Consensus 43 Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~-------aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 43 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ-------AERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------cchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3445666777888888888788888877777655544 44444544444455555555555555444
No 40
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=86.47 E-value=1.2 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRA 91 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~a 91 (276)
...+|+||+++.+.||-.|.-.|.+++.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3468899999999999888877776653
No 41
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.46 E-value=4.6 Score=31.92 Aligned_cols=59 Identities=25% Similarity=0.270 Sum_probs=29.9
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ 157 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q 157 (276)
+|-+.+.++++++-.+.-|++-+.--+.|.+.=-+.|..|.++.+.+..+|..++..+.
T Consensus 27 ~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 27 KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555444555555555555555555555555555554443
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.13 E-value=2.4 Score=30.10 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 039268 161 LLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa~E 181 (276)
+|+.++...+.|-.|+-.-|+
T Consensus 29 al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 29 AARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455666677777777765544
No 43
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.89 E-value=7.7 Score=32.95 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=17.4
Q ss_pred HHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHH
Q 039268 101 VEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNE 137 (276)
Q Consensus 101 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~Rqe 137 (276)
|++..-||-+| -..+.+|...+.-++.|...|.+
T Consensus 12 in~qs~LeD~L---~~~R~el~~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 12 VDKQSHLEEQL---NKSLKTIASQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555522 23455555555555555555544
No 44
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.84 E-value=6.6 Score=31.91 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 039268 75 AKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 75 aq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
.+.||.+|...+..|+.|.-..|..|-.++..||+
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555666666666666666
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.39 E-value=11 Score=32.11 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
+-.|+.|+.+|+-++..+-..+.--++-|.++++.- |-.|++|.++|-.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW------M~rk~qEAe~MN~a 147 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW------LKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 445667777777777777666666566666666543 66788888887544
No 46
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.36 E-value=18 Score=34.99 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=30.6
Q ss_pred HHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 173 LMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 173 lqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
..-+|.-|+|-|+.-.+++.++++|++||.....+|.||--.|
T Consensus 115 s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 115 NEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777788888888777777777776655
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.12 E-value=13 Score=29.81 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcccc
Q 039268 44 LEIQHAEIQRLLGDN 58 (276)
Q Consensus 44 l~~Q~~EiqrLl~dN 58 (276)
...+..|++....-|
T Consensus 15 y~~K~eel~~~~~~~ 29 (131)
T 3tnu_A 15 FFTKTEELNREVATN 29 (131)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444555444433
No 48
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=85.10 E-value=13 Score=29.72 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039268 70 RELAAAKEELHRMNLVIGEI 89 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i 89 (276)
.|+.-...-||.|..-+.++
T Consensus 36 ~Ei~elrr~iq~L~~el~~l 55 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNV 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.05 E-value=5.1 Score=32.61 Aligned_cols=72 Identities=25% Similarity=0.291 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHH
Q 039268 89 IRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDG 168 (276)
Q Consensus 89 i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~ 168 (276)
.+.++|.+|..|+- .++.||.|+..+..|.|..+ -.|.++|-.|..||.-.+...| ....|.+.
T Consensus 9 ~~d~rD~~Ie~Lkr----------eie~lk~ele~l~~E~q~~v---~ql~~~i~~Le~eL~e~r~~~q---~a~~e~e~ 72 (120)
T 3i00_A 9 NKDEKDHLIERLYR----------EISGLKAQLENMKTESQRVV---LQLKGHVSELEADLAEQQHLRQ---QAADDCEF 72 (120)
T ss_dssp -CCTHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred CCCcHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45667766655442 23446666666666666643 3566666667777666553322 23455566
Q ss_pred HHHHHHHH
Q 039268 169 LHQELMHA 176 (276)
Q Consensus 169 lrqElqr~ 176 (276)
|+.|+..+
T Consensus 73 Lr~e~~~l 80 (120)
T 3i00_A 73 LRAELDEL 80 (120)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 50
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=84.68 E-value=4.1 Score=35.00 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=13.1
Q ss_pred hhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 154 ADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 154 ad~qqipal~aEie~lrqElqr~Ra 178 (276)
.|-.+|.+|..||..||+++...|.
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554443
No 51
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=84.64 E-value=11 Score=28.35 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhhhhhh
Q 039268 79 LHRMNLVIGEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 79 lqrl~~~~~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
...|...+.++..--+.++..+=.++..+|+
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=84.35 E-value=12 Score=28.51 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=46.3
Q ss_pred hhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 105 LKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 105 ~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
.+.|.+++. +..|+.++...+.+....|.+|..+...+.+|-..+... -+|++.++..|...+..
T Consensus 10 ~~~eeEm~~---~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 10 ARQEEEMKE---QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNYH 74 (89)
T ss_dssp CHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHH
Confidence 444554443 667888888888888999999999999998886666654 46666666666544443
No 53
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=84.34 E-value=2.1 Score=29.72 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMH 175 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr 175 (276)
|.+..||+ ++.+.+||++++-|. ||++++|+.+
T Consensus 9 le~~KqEI---L~E~RkElqK~K~EI---------IeAi~~El~~ 41 (45)
T 1use_A 9 LQRVKQEL---LEEVKKELQKVKEEI---------IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 33344444 344567777777555 5777777765
No 54
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=84.10 E-value=12 Score=28.87 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039268 138 LNGKVQTLQKDLAKL 152 (276)
Q Consensus 138 L~~qvq~l~~eL~r~ 152 (276)
|..+|..++.|-+++
T Consensus 61 Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 61 LRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 55
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=83.65 E-value=6.2 Score=35.34 Aligned_cols=92 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
+..++.++++++..+.+......+++....+++.|.+.-.++--.-+.+++..+.++..+++.+ +.
T Consensus 68 ~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~--------------~~ 133 (369)
T 4dk0_A 68 QINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEM--------------DV 133 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH--------------HH
Confidence 3445555555555544444444555555566666666544444444556666666666655443 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 197 MEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 197 MEknlisMarEvEKLRaElanae~r~ 222 (276)
.+.++-..-.+++.++..+.+..-++
T Consensus 134 ~~~~l~~~~~~l~~a~~~l~~~~i~A 159 (369)
T 4dk0_A 134 VQENIKQAEIEVNTAETNLGYTKITS 159 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhhcCEEEC
Confidence 34445555556777777777776665
No 56
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=82.93 E-value=19 Score=32.53 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 163 RAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 163 ~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
..|||...+ +-+|.|+-.|+.-+--+++..+..=+.-++|..|+..|+.=|.+
T Consensus 180 ~~~le~~~~--~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~ 232 (253)
T 2d1l_A 180 YLLLEETEK--QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISED 232 (253)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHH
Confidence 344444333 55789999999999999999999999999999999998875544
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.43 E-value=7.8 Score=29.79 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 93 QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 93 ~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
-|..|...+|.|..|.. -++.||.+-..+..+++.+.+.|..|..+.+.+.+|..-.+
T Consensus 11 LE~KIq~avdtI~lLqm---EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQM---EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 34556666776666666 33557777777777777777777777777777777755444
No 58
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=81.93 E-value=6.1 Score=31.77 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=46.0
Q ss_pred hhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 039268 111 LRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMH 175 (276)
Q Consensus 111 lra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr 175 (276)
|-+..++.+||.+.+.++..|...-++|...++.+.+|=.=.-+-+ ..||-|.|+.+.
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL-------RdIEiLcQe~~~ 60 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL-------RDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3466789999999999999999999999999999999855455555 467777777543
No 59
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=80.99 E-value=5 Score=32.13 Aligned_cols=48 Identities=27% Similarity=0.477 Sum_probs=29.5
Q ss_pred HHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 99 DLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 99 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
+||..-+.||. .+.++..|-.+|....+...++|+.|..||.|+.++|
T Consensus 34 ELIqEYl~LE~----------~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~EN 81 (104)
T 3s9g_A 34 ELIKEYLELEK----------SLSRMEDENNRLRLESKRLDARVRELELELDRLRAEN 81 (104)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Confidence 45566666665 4455555555655556666667777766666666555
No 60
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=80.63 E-value=28 Score=30.18 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=11.5
Q ss_pred hccccccchhhHHHHHHHH
Q 039268 54 LLGDNRRLVEDRMAMQREL 72 (276)
Q Consensus 54 Ll~dNqRLaatHvaLrqeL 72 (276)
++....++|..|..|-+.|
T Consensus 74 ~l~~~e~~a~~h~~~a~~L 92 (301)
T 2efk_A 74 ILQEVNDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445556677776666655
No 61
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=80.51 E-value=18 Score=28.55 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
|...|..|..=|......|..++. ...+.+..++.+-=|.+ -++.++.+-..=|++=.+|....++|..++..+.+
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke-~~~q~~~~~E~i~vLk~---Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKE-EAEQHKIVMETVPVLKA---QADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 555566665555555555665555 44566666777777777 66778888888888888898889999999988888
Q ss_pred HHHHHHhhh
Q 039268 148 DLAKLQADN 156 (276)
Q Consensus 148 eL~r~~ad~ 156 (276)
++.++.++.
T Consensus 83 q~~~L~~~~ 91 (94)
T 3jsv_C 83 EFNKLKVGC 91 (94)
T ss_dssp TTC------
T ss_pred HHHHHHHhh
Confidence 888877654
No 62
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=80.43 E-value=9 Score=33.94 Aligned_cols=62 Identities=13% Similarity=0.204 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
++.++.++++++..+.+......+++....+++.|.+.=.++--.-+.++|..+.++..+++
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a 128 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQA 128 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444455555555555554433333344555555555544443
No 63
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=78.69 E-value=5.9 Score=29.13 Aligned_cols=43 Identities=37% Similarity=0.526 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ 158 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq 158 (276)
.+|.-|....+-||.|..+-..|+.++..|.++|+++++++-+
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 3677788888899999999999999999999999888887743
No 64
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=77.66 E-value=2.9 Score=29.48 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q 039268 41 EEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMN 83 (276)
Q Consensus 41 Ee~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~ 83 (276)
|+++..-...+..|..-|.+|+.+=-.-|++|...+.+|..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888887888999999999999988888888888888887763
No 65
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.19 E-value=24 Score=34.02 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=24.3
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 107 LEADLRATEPLKKEAVQLRAEVQKLNNLRNEL 138 (276)
Q Consensus 107 mEAelra~e~lk~El~q~raE~q~L~~~RqeL 138 (276)
+..+|+..|.+-.||.++..+++.|...-|+.
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55667777777778888888888887777776
No 66
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=77.06 E-value=23 Score=27.35 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 187 NIELMEQRQAMEKNLVSMAREVEKLR 212 (276)
Q Consensus 187 ~~e~~Eq~qaMEknlisMarEvEKLR 212 (276)
-.+.....+..+.-|.--..-++||+
T Consensus 69 l~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 69 QLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666666666666666677776
No 67
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.61 E-value=12 Score=29.73 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 039268 199 KNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 199 knlisMarEvEKLRaElanae 219 (276)
+.+-.+-.|+|+||.-+...+
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555444
No 68
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=76.44 E-value=8.2 Score=29.82 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=35.4
Q ss_pred hhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhH
Q 039268 109 ADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPL 161 (276)
Q Consensus 109 Aelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipa 161 (276)
|==|+.+.=|.--.+....+..|...-..|..+|+.|++|+..+..=+.++|.
T Consensus 26 AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 33455566666666677777777777777777777777777777776666665
No 69
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.06 E-value=15 Score=31.46 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q 039268 159 IPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa 179 (276)
+..|+.+|...++||+.+-++
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 455678888888888877665
No 70
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=75.79 E-value=25 Score=26.99 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGEIRAE-QEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKL---NNLRNELNGKVQ 143 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~i~ae-~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L---~~~RqeL~~qvq 143 (276)
..++...+..+|......+..+..| +-..++ .+|. ..+-...=|.|...|++.+ .+.|..+.+++.
T Consensus 6 YE~df~~~~~~i~~~l~~~~~~~ge~Rk~~i~-------~ie~---~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr 75 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAPSQPLSQRNTTLK-------HVEQ---QQDELFDLLDQMDVEVNNSIGDASERATYKAKLR 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4567777777777776666655443 111122 2233 2233333456778888888 257889999999
Q ss_pred HHHHHHHH-HHhhhcch
Q 039268 144 TLQKDLAK-LQADNQQI 159 (276)
Q Consensus 144 ~l~~eL~r-~~ad~qqi 159 (276)
...+||.+ ++.+++++
T Consensus 76 ~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 76 EWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999888 88777665
No 71
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.73 E-value=9.3 Score=28.90 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=36.6
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q 039268 108 EADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIP 160 (276)
Q Consensus 108 EAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqip 160 (276)
+|==|+.+.=|.--......+..|...-..|..+|+.|++|+..+..=+-|+|
T Consensus 25 ~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 25 IAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34445666666667777777777888888888888888888888777776666
No 72
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=75.14 E-value=27 Score=34.32 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
..-.+-++..++..+++.|.+.|..++.+|..++
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444566666777777777777777776544
No 73
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=75.07 E-value=8.6 Score=28.21 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
+=+|+.|+..|++|.++....+|+|.+++ +.+||.+-.|.+.
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraR-------k~LE~~vrk~~k~ 50 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRAR-------KDLEKLVRKVLKN 50 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 56889999999999999999999998876 4556665555443
No 74
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.06 E-value=2.7 Score=35.16 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=8.1
Q ss_pred HHHHHHHhhhccCC
Q 039268 208 VEKLRAELTNFDGR 221 (276)
Q Consensus 208 vEKLRaElanae~r 221 (276)
+++|++.|..++.+
T Consensus 105 ~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 105 NKRLTEQLREKDML 118 (135)
T ss_dssp HHHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666655443
No 75
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=73.93 E-value=36 Score=27.95 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 039268 162 LRAEIDGLHQELMH 175 (276)
Q Consensus 162 l~aEie~lrqElqr 175 (276)
|..||..|.|+|+.
T Consensus 76 LqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 76 LEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444333333
No 76
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=73.86 E-value=63 Score=30.78 Aligned_cols=41 Identities=12% Similarity=0.249 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKV-QTLQKDLAKLQADN 156 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qv-q~l~~eL~r~~ad~ 156 (276)
.++.=...+..++.+++.....+...+ ..+.++|.....|.
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~ 119 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEA 119 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566667777777777777777777 45566677766664
No 77
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=72.35 E-value=16 Score=28.44 Aligned_cols=16 Identities=6% Similarity=-0.215 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhhhhhh
Q 039268 94 EVHVRDLVEKGLKLEA 109 (276)
Q Consensus 94 e~q~R~l~ek~~KmEA 109 (276)
+.++..+-..+..+|+
T Consensus 36 ~~e~~~~q~~i~~lE~ 51 (95)
T 3mov_A 36 AKEKDNSRRMLTDKER 51 (95)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 78
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=71.95 E-value=40 Score=27.66 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHH
Q 039268 162 LRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSM 204 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisM 204 (276)
+..||..|++|+..++-.++.-++-..++.+..+..+++++.+
T Consensus 87 ~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 87 KDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555554443
No 79
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=71.76 E-value=41 Score=27.72 Aligned_cols=114 Identities=11% Similarity=0.206 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
.++...+.+|+.+...+..|+ .+..+++- .......++.+|..+-.++.++...- ..+++.|.++.
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~--------~~~~~~L~---~~~~~~~~k~~le~l~~~i~~~a~~i---k~~Lk~l~~~~ 108 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVK--------KKHSDILS---APQTDDQMKEELEELMTDIKRTANKV---RGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------HHHHHHCC----------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHh---cCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 445555555555555554332 22222222 12244567788888888777766543 33444444443
Q ss_pred HHH----------HhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 150 AKL----------QADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 150 ~r~----------~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
... +.-.-|...|...+-.+=++++.+...|..+-|..+. -|.+.+-.
T Consensus 109 ~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~--Rq~~I~~~ 166 (180)
T 1s94_A 109 EQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK--RQMEITGR 166 (180)
T ss_dssp HHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC------------
T ss_pred HhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 222 1112356677777777777888887777766666654 34444433
No 80
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=71.61 E-value=3.9 Score=37.36 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHH
Q 039268 41 EEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMN 83 (276)
Q Consensus 41 Ee~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~ 83 (276)
|+++..-..++..|-.-|.+|.++--.+++||...+.||.+|.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888889999999999999999999999999999999986
No 81
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.56 E-value=19 Score=28.83 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 96 HVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 96 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
+.|.++++..|.|.| ++.|+.++..++..+....++.++|..+
T Consensus 5 e~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~ 47 (125)
T 1joc_A 5 ERRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGRE 47 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999995 4567777777776666555554444433
No 82
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.09 E-value=37 Score=26.85 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=16.1
Q ss_pred hhhhhhhhhhchhhHHHHHHHHHHHHHHH
Q 039268 104 GLKLEADLRATEPLKKEAVQLRAEVQKLN 132 (276)
Q Consensus 104 ~~KmEAelra~e~lk~El~q~raE~q~L~ 132 (276)
..|++...-.++.++.||..-..|++.|.
T Consensus 46 ~~k~~eq~~~le~lk~eL~~~~~el~~lq 74 (107)
T 2no2_A 46 QRKTQEQLEVLESLKQELATSQRELQVLQ 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666555555533
No 83
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.76 E-value=34 Score=26.30 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
-.++..+|..|..+...+..|..++..+..++.+++
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555444443
No 84
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.60 E-value=18 Score=27.55 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-...+.+++.+-.+..++++|+..|...
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777666544
No 85
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=69.79 E-value=2.6 Score=35.67 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q 039268 123 QLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQI 159 (276)
Q Consensus 123 q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqi 159 (276)
++.+|.++|...-|-+-+--+++++||.-++...+++
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555655555555443
No 86
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=69.59 E-value=18 Score=30.46 Aligned_cols=81 Identities=15% Similarity=0.253 Sum_probs=36.4
Q ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH
Q 039268 115 EPLKKEAV-QLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ 193 (276)
Q Consensus 115 e~lk~El~-q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 193 (276)
+..|.++. ++..-+..+-...+.|.-+.+.+..|..+.... .--|.+.+-|+.+++-+..-|+.+..=|+--...++|
T Consensus 24 e~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~-~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 24 PTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSAN-PLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555543 223333333333333444444444443321111 1125666666666666555555555444444445555
Q ss_pred HHH
Q 039268 194 RQA 196 (276)
Q Consensus 194 ~qa 196 (276)
++.
T Consensus 103 v~~ 105 (150)
T 4dci_A 103 VRE 105 (150)
T ss_dssp HHH
T ss_pred Hhc
Confidence 443
No 87
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=68.79 E-value=9.2 Score=29.98 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039268 198 EKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 198 EknlisMarEvEKLRaEla 216 (276)
+.-|..++..|++|++|+-
T Consensus 61 ~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777653
No 88
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.44 E-value=34 Score=27.01 Aligned_cols=87 Identities=26% Similarity=0.364 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
|+.+++..++.++..|.....+...++..|+.+|.+.+.-- -..-.+...+.+||--+-++ +.++--
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R---~~aE~~~~~ie~ElEeLTas----------LFeEAN 68 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELR---TKAEEEADKLNKEVEDLTAS----------LFDEAN 68 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------HHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------HHHHHH
Confidence 56778888899888887777776666666666655544221 22223334444454444443 333332
Q ss_pred HHHHHHHHHHH--------HHHHHHHHhhhcc
Q 039268 196 AMEKNLVSMAR--------EVEKLRAELTNFD 219 (276)
Q Consensus 196 aMEknlisMar--------EvEKLRaElanae 219 (276)
+||+.|+ -+++|+++|...+
T Consensus 69 ----~MVa~ar~e~~~~e~kn~~L~~qL~d~d 96 (97)
T 2eqb_B 69 ----NMVADARKEKYAIEILNKRLTEQLREKD 96 (97)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2344433 2778888876543
No 89
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=68.17 E-value=31 Score=26.65 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 134 LRNELNGKVQTLQKDLAKLQADNQ 157 (276)
Q Consensus 134 ~RqeL~~qvq~l~~eL~r~~ad~q 157 (276)
.|..+.++|....+||.+++.+++
T Consensus 68 ~R~~~~~klr~Yk~dL~~lk~elk 91 (102)
T 1vcs_A 68 SRGMYSNRMRSYKQEMGKLETDFK 91 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666655554443
No 90
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=67.69 E-value=1e+02 Score=30.91 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
|++=+.-++.|+-++.+.++.|.++|-..+.|.+.++ +.+.++..|-+.++.-+--++.-
T Consensus 354 lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~---d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 354 LRQRLLDARNKITSAESAVNSARNNLSARTNEQKHAN---DALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhhH
Confidence 3333444455555555555555555555555543333 22233334444455555444444
No 91
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=66.92 E-value=38 Score=25.81 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=58.2
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI-DGLHQELMH 175 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi-e~lrqElqr 175 (276)
|..++|++-.|...|+.++.++ ++..+...++. ..+++.+-.+..+.+.+++..-..-.++ +...++++.
T Consensus 2 m~~I~d~A~eL~~~I~~s~ey~-~~~~a~~~i~~--------d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~ 72 (113)
T 2iaz_A 2 MSNIYDSANELSRGLRGLPEYK-AVKAAKDAIAA--------DAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEG 72 (113)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHH-HHHHHHHHHHH--------CHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHc--------CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4578999999999999999988 77777776655 3346666667666776665542111111 222333333
Q ss_pred HHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 176 ARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 176 ~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
+...|+ ..+.+.....-|..|-.|-.+|-+.
T Consensus 73 l~~~i~-----~~p~v~~y~~Ae~~l~~ll~~I~~~ 103 (113)
T 2iaz_A 73 FGKQIQ-----GNSLLSEFFTKQQQLAIYLSDIEKI 103 (113)
T ss_dssp HHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-----CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 2334444445556666666666554
No 92
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=66.07 E-value=39 Score=25.30 Aligned_cols=58 Identities=28% Similarity=0.416 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
+..+|..|.....||..++..+.+|+.++.-+-+.+..+++ .|||+.+.|.+=-.||.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~----------------~lek~L~~E~~LK~QAV 59 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKA----------------QFEKQLLTERTLKTQAV 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 35677888888899999999998888877633322222222 36777777766555554
No 93
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=66.02 E-value=33 Score=30.53 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 039268 165 EIDGLHQELMHARAAV 180 (276)
Q Consensus 165 Eie~lrqElqr~Raa~ 180 (276)
.++.++.++..++..+
T Consensus 137 ~l~~~~~~l~~a~~~l 152 (369)
T 4dk0_A 137 NIKQAEIEVNTAETNL 152 (369)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444444444433
No 94
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=65.97 E-value=59 Score=27.28 Aligned_cols=96 Identities=16% Similarity=0.304 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHH---HHHH
Q 039268 123 QLRAEVQKLNNLRNELNGKVQTLQKDLAK--LQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQ---RQAM 197 (276)
Q Consensus 123 q~raE~q~L~~~RqeL~~qvq~l~~eL~r--~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq---~qaM 197 (276)
++-.+.+.|.+-=.+|..-|..|++|+.. ++-..+|+-.+..||+.+..||..+-..|.-||-.--..-|. -=.=
T Consensus 18 kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vce 97 (141)
T 3okq_A 18 ELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCE 97 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 34567778888888888888999999654 445778999999999999999999999999998876555442 1222
Q ss_pred HHHHHHHHHH-HHHHHHHhhhc
Q 039268 198 EKNLVSMARE-VEKLRAELTNF 218 (276)
Q Consensus 198 EknlisMarE-vEKLRaElana 218 (276)
|+.+..+.-| +.-|+.+|.++
T Consensus 98 EQqfl~~QedL~~DL~eDL~ka 119 (141)
T 3okq_A 98 EQQFLTLQEELILDLKEDLGKA 119 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555444 44555555444
No 95
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=65.15 E-value=31 Score=23.73 Aligned_cols=19 Identities=11% Similarity=0.492 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 039268 164 AEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 164 aEie~lrqElqr~Raa~Ey 182 (276)
.+|...+-+|......|+|
T Consensus 40 ~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 40 EKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555555
No 96
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=65.15 E-value=20 Score=24.57 Aligned_cols=45 Identities=27% Similarity=0.439 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 159 IPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
+.+|+.|++.|+.| .|--|. -+-+-...|++||+|..+..-+..|
T Consensus 2 laalkselqalkke------gfspee--laaleselqalekklaalksklqal 46 (48)
T 1g6u_A 2 LAALKSELQALKKE------GFSPEE--LAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHT------TCSHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc------CCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777776654 222222 1223345788888888877665544
No 97
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=64.78 E-value=46 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 039268 164 AEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 164 aEie~lrqElqr~Raa~Ey 182 (276)
.|++++.-.+.++.+-++-
T Consensus 74 dE~~Sl~~q~~~~~~qLdk 92 (96)
T 3q8t_A 74 DELKSVENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554443
No 98
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.78 E-value=46 Score=25.68 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 164 AEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
.|+|.....|..+...++...|..
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444433
No 99
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=64.67 E-value=28 Score=26.72 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=20.3
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 180 VDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 180 ~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
|+..|-.|..+.++.+....+-....+|.++|+.|..+-
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555555556666666665543
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=64.58 E-value=30 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.261 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 039268 136 NELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~ 156 (276)
|.|+.||..|..|+.-+++|+
T Consensus 14 ~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 101
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=64.15 E-value=5.5 Score=32.12 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 039268 138 LNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 138 L~~qvq~l~~eL~r~~ 153 (276)
|+++|+.|.+||..+.
T Consensus 4 l~~~~~~l~~~~~~~~ 19 (182)
T 3kqg_A 4 LNAQIPELKSDLEKAS 19 (182)
T ss_dssp ---------CHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 4444555555444443
No 102
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=63.78 E-value=64 Score=32.33 Aligned_cols=85 Identities=11% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 131 LNNLRNELNGKVQTLQKD-LAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVE 209 (276)
Q Consensus 131 L~~~RqeL~~qvq~l~~e-L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvE 209 (276)
|...|+++..-+..-.++ ...++.++ .-.|...|++++++|+++-.-.+--.+--.....+++..|.|+.+.-.+++
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 682 (695)
T 2j69_A 605 LPQVAHEQSQVVYNAVKECFDSYEREV--SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIE 682 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444555555333222222 22333333 445678889999999999988877777777888888888877776666665
Q ss_pred HHHHHhhh
Q 039268 210 KLRAELTN 217 (276)
Q Consensus 210 KLRaElan 217 (276)
..=.+|.+
T Consensus 683 ~~~~~~~~ 690 (695)
T 2j69_A 683 AAYSNLLA 690 (695)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 54444443
No 103
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=63.35 E-value=15 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=13.2
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHHHH
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQKL 131 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q~L 131 (276)
.+..||.. +...-++++..++.+|.+|
T Consensus 23 ~rN~rL~~---~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 23 ARNSKLME---TLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 33346655 2233455555555555554
No 104
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=62.70 E-value=15 Score=28.77 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=30.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 039268 114 TEPLKKEAVQLRAEVQKLNNLRN-ELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 114 ~e~lk~El~q~raE~q~L~~~Rq-eL~~qvq~l~~eL~r~~ad~ 156 (276)
.|.+|+|...+-.|+..+...++ +.-.++++-.+|++.++--+
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tv 59 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTV 59 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 45688888888888877777776 88888777777766666433
No 105
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=62.67 E-value=33 Score=30.25 Aligned_cols=9 Identities=11% Similarity=0.121 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 039268 119 KEAVQLRAE 127 (276)
Q Consensus 119 ~El~q~raE 127 (276)
.++.+++.+
T Consensus 114 ~~~~~a~~~ 122 (341)
T 3fpp_A 114 QDLDNAATE 122 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=62.37 E-value=11 Score=26.46 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
|+||+|+..++..+..|...-+||.+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 107
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=62.28 E-value=19 Score=35.40 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTL 145 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l 145 (276)
-.+-++..++..+++.|.+.|..++.++-.+
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 66 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKR 66 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666666666443
No 108
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=62.08 E-value=12 Score=25.92 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=15.1
Q ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHH
Q 039268 147 KDLAKLQADNQQIPLLRAEIDGLHQELMH 175 (276)
Q Consensus 147 ~eL~r~~ad~qqipal~aEie~lrqElqr 175 (276)
.||.+++.|+ +-.++.||..+++||.-
T Consensus 7 ~dle~~KqEI--L~E~RkElqK~K~EIIe 33 (45)
T 1use_A 7 SDLQRVKQEL--LEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3455555555 55556666666666543
No 109
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=61.53 E-value=22 Score=34.36 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
+-++-.++..+++.|.+.|..++.++..
T Consensus 36 l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555543
No 110
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=61.19 E-value=85 Score=27.50 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQ-TLQKDLAKLQAD 155 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq-~l~~eL~r~~ad 155 (276)
.++.=...+..++..++.....|+..++ .+...|.....|
T Consensus 85 tl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~ 125 (312)
T 3abh_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466677777777777777777776 344666666555
No 111
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=61.06 E-value=67 Score=26.28 Aligned_cols=104 Identities=17% Similarity=0.280 Sum_probs=59.9
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQ--IPLLRAEIDGLHQELM 174 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qq--ipal~aEie~lrqElq 174 (276)
+..++|++-.|...|+..+.++ ++..+...++.= ..=+.|-.+.+.+.+++...+.--+. ......+++.+..+|+
T Consensus 6 ~~~I~d~A~eL~~aI~eseeyk-~yk~A~~~i~~D-~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 6 KKDIVQQARNLAKMISETEEVD-FFKRAEAQINEN-DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHH-HHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 4678999999999999999998 787777766652 22233444455555555444432211 2333344444444443
Q ss_pred HHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 175 HARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 175 r~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
. .+.+.....-|..|-.|-.+|-+.=++
T Consensus 84 ~------------np~V~~y~~Ae~~l~~LL~~I~~iI~~ 111 (151)
T 2pih_A 84 E------------IPVIQEFRDSQMEVNDLLQLVAHTISN 111 (151)
T ss_dssp H------------SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 334444455566666777776555443
No 112
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.89 E-value=35 Score=24.33 Aligned_cols=42 Identities=21% Similarity=0.360 Sum_probs=23.7
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 112 RATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 112 ra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
|...--+.+...+..+++.|.....+|..+|..+..|+..+.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666666666666555544443
No 113
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=59.72 E-value=56 Score=24.90 Aligned_cols=52 Identities=27% Similarity=0.358 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
|=.|=.|+..=--.|..++.+|-++|+.||-|-. +|+.|++++++=..++..
T Consensus 14 Li~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e----------~l~~El~s~~~~~~r~~~ 65 (77)
T 2w83_C 14 LILENTQLLETKNALNIVKNDLIAKVDELTCEKD----------VLQGELEAVKQAKLKLEE 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHH
Confidence 3334444444444567778888888888887733 344555665555544443
No 114
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=59.68 E-value=9.8 Score=29.87 Aligned_cols=60 Identities=28% Similarity=0.310 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhh--hhhHHhhhHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHhhhcc
Q 039268 159 IPLLRAEIDGLHQELMHARAA--VDYEKKANIELMEQRQ-------AMEKNLVSMAR----EVEKLRAELTNFD 219 (276)
Q Consensus 159 ipal~aEie~lrqElqr~Raa--~EyEKk~~~e~~Eq~q-------aMEknlisMar----EvEKLRaElanae 219 (276)
+.++|+|.|++-+|..-.+.- -|||.|.+.-+ .-++ .||.+-..|.. ||-.||.||.+..
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi-~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQL-AEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567889999999998766544 47888864332 2222 34555555554 6999999998754
No 115
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=59.57 E-value=20 Score=28.93 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhH
Q 039268 71 ELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLK 118 (276)
Q Consensus 71 eLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk 118 (276)
+|..+-+||.|-.-+...-=.+-|..+-..|++++-||.||...+.|+
T Consensus 60 eLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~ 107 (111)
T 2v66_B 60 ELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLL 107 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344445555666666666666554444
No 116
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.38 E-value=8 Score=38.40 Aligned_cols=86 Identities=21% Similarity=0.290 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHhhhhhhhhhhhc-----------hhhHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMNLVIGEIRAE------QEVHVRDLVEKGLKLEADLRAT-----------EPLKKEAVQLR 125 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~~~~~~i~ae------~e~q~R~l~ek~~KmEAelra~-----------e~lk~El~q~r 125 (276)
+++.-++|==+.|++|=.+-..--..+..| -|..-.+|-++...||.+.+.. +-|-.++.++.
T Consensus 297 ~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~ 376 (575)
T 2i1j_A 297 PDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQ 376 (575)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 556666666666666655444333332221 1222334444444444444322 22344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 039268 126 AEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 126 aE~q~L~~~RqeL~~qvq~l~~e 148 (276)
.|...|...++++....+.|..+
T Consensus 377 ~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 377 AAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444444
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.31 E-value=39 Score=23.65 Aligned_cols=36 Identities=25% Similarity=0.377 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKL 152 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~ 152 (276)
=|.....+..++..|...-.+|..+|+.|..|+..+
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554444
No 118
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=59.24 E-value=52 Score=27.08 Aligned_cols=27 Identities=7% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-|..++-+.|..+..+--+++....+.
T Consensus 126 ~q~~~L~~kf~~~m~~yq~~q~~y~~~ 152 (180)
T 1s94_A 126 TQYSTISRKFVEVMSDYNTTQIDYRDR 152 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888877777665444
No 119
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=59.19 E-value=58 Score=24.94 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 70 RELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 70 qeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
.++...+.+|..|...+..|+.-.+ +++ +.....+.++.+|..+-.++.++... +..+++.|.++.
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~--------~~L---~~~~~~~~~~~~l~~l~~~i~~~a~~---ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHS--------AIL---ASPNPDEKTKEELEELMSDIKKTANK---VRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHH---HCSSCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHH---hcCCccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4555666666666655554433333 221 11223445777777777777765544 334445554443
Q ss_pred H
Q 039268 150 A 150 (276)
Q Consensus 150 ~ 150 (276)
.
T Consensus 78 ~ 78 (127)
T 1ez3_A 78 E 78 (127)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=58.50 E-value=75 Score=26.02 Aligned_cols=30 Identities=33% Similarity=0.516 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 039268 135 RNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 135 RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElq 174 (276)
-+||.+++..|++.|+.+. +|++.||.+.+
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~----------ae~erlr~~~~ 102 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDAS----------AEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHhhch
Confidence 4556666666666666655 45555555554
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.43 E-value=1.2e+02 Score=28.26 Aligned_cols=33 Identities=6% Similarity=-0.110 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 164 AEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
.-.+.|.+|++.-|..++-+.+...+..++.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 334555556665555555555555555544444
No 122
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=57.67 E-value=1.2e+02 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.399 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039268 189 ELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 189 e~~Eq~qaMEknlisMarE 207 (276)
..++..|.||...|..-++
T Consensus 208 ~~~d~lQ~lEe~Ri~~lk~ 226 (406)
T 4dyl_A 208 GLLRSLQDLHEEMACILKE 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467889999888877665
No 123
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=57.66 E-value=33 Score=25.72 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
|+..+..+|++|.+.=-+...++..+..| +-.+-++||.+-++.=..-+++..+|..+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 61 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKST 61 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778888888888889999999988 78888899998888777777777666543
No 124
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=57.57 E-value=15 Score=23.63 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIR 90 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ 90 (276)
.+++|||++.+.||-.+.-....|+
T Consensus 5 aaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888776655555444
No 125
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=57.10 E-value=94 Score=26.72 Aligned_cols=68 Identities=18% Similarity=0.159 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcch-hHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKV-QTLQKDLAKLQADNQQI-PLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qv-q~l~~eL~r~~ad~qqi-pal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
=...+..++..++.....|+..+ ..+.+.|..+..+..+. -.+..++..+.++++.....++--|+.|
T Consensus 70 ~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y 139 (301)
T 2efk_A 70 SFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKF 139 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554 23344444444443321 1223344444444444444444444433
No 126
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=57.02 E-value=57 Score=32.01 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=21.8
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
..-.+-.+-.++..+++.|.+.|..++.++-.+++
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~ 72 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344445566667777777777777777665544
No 127
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.93 E-value=89 Score=26.37 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=24.4
Q ss_pred hhcchhHHHHHH-------HHHHHHHHHHHhhhhhHHhhhHHHHH
Q 039268 155 DNQQIPLLRAEI-------DGLHQELMHARAAVDYEKKANIELME 192 (276)
Q Consensus 155 d~qqipal~aEi-------e~lrqElqr~Raa~EyEKk~~~e~~E 192 (276)
|+-++-.|.|++ |+|.+=|--+|..+|.||-.-.|.+.
T Consensus 96 DiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~Md 140 (167)
T 4gkw_A 96 DMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMD 140 (167)
T ss_dssp HHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555554 66677777788888888866555543
No 128
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=56.57 E-value=31 Score=26.47 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
|+..+..+|++|.+.=-++..+++.+..| +-.+-++||.+-++.-...+++..+|..+.
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L~ 74 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKLN 74 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677888888888899999999999 788889999988888777777777766544
No 129
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.52 E-value=26 Score=33.40 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
.+-.+..++..+++.|.+.|..++.++
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i 58 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRV 58 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555444444
No 130
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=55.98 E-value=93 Score=26.29 Aligned_cols=136 Identities=19% Similarity=0.305 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 64 DRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 64 tHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
....|-.+|.++.++|..+..-+..+...++ +++.+ +.++ ..+..|+..+..++..=...|.+......
T Consensus 14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~-~~~~l-------~~~~---~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKE-DYNTL-------KREL---SDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHHHH-------HTHH---HHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999998888777776666654 23332 2221 23556666666666666667777777777
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 039268 144 TLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFD 219 (276)
Q Consensus 144 ~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae 219 (276)
.+.+||.-+.+- |=.|-..|-.+=.+.|..+ ++.+..+.+|.+.-+.-|-++-.++--|+.=+.+++
T Consensus 83 ~ie~ElEeLTas------LFeEAN~MVa~ar~~~~~~---e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 83 KLNKEVEDLTAS------LFDEANNMVADARKEKYAI---EILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777776665542 2344455555444444443 234556667777777777777777777776666554
No 131
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=55.94 E-value=1.3e+02 Score=28.05 Aligned_cols=99 Identities=16% Similarity=0.222 Sum_probs=61.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHH-HHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEA-VQLRAEVQKLNNLRNELN 139 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El-~q~raE~q~L~~~RqeL~ 139 (276)
+......||+.+...+++++.|.+..+.-.+-.+.= ..|.+. .-..+-....+-... .++.-| ..+...|.++.
T Consensus 15 ~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al-~rL~eq---~g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a 89 (302)
T 3ibp_A 15 AREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSL-NQLSEQ---CGEEFTSSQDVTEYLQQLLERE-REAIVERDEVG 89 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---TTCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHH---hCCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 456778899999999999999988887655544421 111111 011222333344344 333444 67888888888
Q ss_pred HHHHHHHHHHHHHHh-hhcchhHHHH
Q 039268 140 GKVQTLQKDLAKLQA-DNQQIPLLRA 164 (276)
Q Consensus 140 ~qvq~l~~eL~r~~a-d~qqipal~a 164 (276)
.+.+.+-++..++.. +--..|.|++
T Consensus 90 ~~k~~Le~~ierLs~pgg~~dprL~~ 115 (302)
T 3ibp_A 90 ARKNAVDEEIERLSQPGGSEDQRLNA 115 (302)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 888888888777665 4444555443
No 132
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.75 E-value=64 Score=24.34 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 96 HVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 96 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
+|..+-+.+.++...+...+..+.||..- ..+|...+.+|..+
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~---~~~l~~ek~~L~~q 57 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQ---NVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 33344444444444444444444444432 22455555555444
No 133
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=55.41 E-value=1e+02 Score=26.65 Aligned_cols=41 Identities=7% Similarity=0.237 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKV-QTLQKDLAKLQADN 156 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qv-q~l~~eL~r~~ad~ 156 (276)
.++.=...+..++..++.....++..+ ..+..+|.....|.
T Consensus 64 s~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~ 105 (290)
T 3i2w_A 64 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKEN 105 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556677777888888888888777 55666777776665
No 134
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=54.94 E-value=45 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhhc--------chhHHHHHHHHHHHHHHHHH
Q 039268 142 VQTLQKDLAKLQADNQ--------QIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 142 vq~l~~eL~r~~ad~q--------qipal~aEie~lrqElqr~R 177 (276)
+..+.+|++-+.+++| .+.+|+.|--.+|.|||--|
T Consensus 28 laafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 28 LAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 3445556655655554 57788889888999988655
No 135
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=54.59 E-value=1.6e+02 Score=28.75 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=5.4
Q ss_pred hhHHHHHHHHH
Q 039268 63 EDRMAMQRELA 73 (276)
Q Consensus 63 atHvaLrqeLa 73 (276)
+|.-.|..-|.
T Consensus 82 PTtC~l~D~L~ 92 (464)
T 1m1j_B 82 PTGCELQTTLL 92 (464)
T ss_dssp ECTTHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 45555544454
No 136
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.56 E-value=1.8e+02 Score=29.06 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=59.5
Q ss_pred ChhhhHHHHHHHHHHHhhhccccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhh
Q 039268 36 HPALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRE---LAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLR 112 (276)
Q Consensus 36 ~P~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqe---Laaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelr 112 (276)
.-.+|.+.|..+...-..+|--++.|.+.--.+..+ =.+|++|.+.|.......+.--+.|-|.+=+.+..|..
T Consensus 457 ~~~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~--- 533 (592)
T 1f5n_A 457 AEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE--- 533 (592)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 347899999988888888877777776654333332 33566777777776666666666777777777766655
Q ss_pred hchhhHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLN 132 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~ 132 (276)
-|..|-.+...|.+++.
T Consensus 534 ---kme~~~~~~~~e~~~~~ 550 (592)
T 1f5n_A 534 ---KMENDRVQLLKEQERTL 550 (592)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHH
Confidence 34445555555555543
No 137
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=54.54 E-value=1.7e+02 Score=28.97 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 172 ELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 172 Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
-..-+|.-|+|-|..=.+++.+.+++.+||...-.+|.||...|.-
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777878777788888888888888888888888777653
No 138
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=54.48 E-value=15 Score=27.17 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHhhhhHHHHHHHHHHhhhhhhh
Q 039268 87 GEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 87 ~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
.+++.=++.+|.+|=+++..||.
T Consensus 21 RafReRK~~~i~~LE~~v~~le~ 43 (70)
T 1gd2_E 21 RAFRKRKEDHLKALETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666665555554444
No 139
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.42 E-value=42 Score=25.24 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 95 VHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 95 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
.++-.+-..+..+|++|.. +|.|+.+.-.|-|.|..++--|-.++....+
T Consensus 28 ~~l~~~q~~i~~lE~el~~---~r~e~~~ql~EYq~LlnvK~~Le~EIatYRk 77 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAE---MRARMQQQLDEYQELLDIKLALDMEIHAYRK 77 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333444444455664433 5666666666666666666666666555443
No 140
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.40 E-value=30 Score=24.54 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 039268 164 AEIDGLHQELMHARA 178 (276)
Q Consensus 164 aEie~lrqElqr~Ra 178 (276)
.+|+.|+.|+..++.
T Consensus 44 ~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 44 TEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555444443
No 141
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.84 E-value=25 Score=24.59 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
.|....++|..++..|++++..++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444433333
No 142
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=53.46 E-value=90 Score=30.02 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLH 170 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lr 170 (276)
.++..+-.+-++|....++|.++...+++++.++..+-....+|++++..|+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~ 82 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIV 82 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4666666666666667777777777777776665544444444444443333
No 143
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=53.40 E-value=43 Score=25.88 Aligned_cols=20 Identities=0% Similarity=-0.243 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhhhhhhhhc
Q 039268 95 VHVRDLVEKGLKLEADLRAT 114 (276)
Q Consensus 95 ~q~R~l~ek~~KmEAelra~ 114 (276)
.++-.|=-+...||..|+..
T Consensus 12 ~~~~~Lq~~~~~LE~~l~e~ 31 (95)
T 3mov_A 12 NLYFQGQKESRACLERIQEL 31 (95)
T ss_dssp ------CCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33444434444555544433
No 144
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=52.46 E-value=75 Score=25.38 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh
Q 039268 157 QQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa 179 (276)
.+|-+|.+||+.|+.|-|+++..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889898888888753
No 145
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.40 E-value=55 Score=23.12 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
++.+..+..++..|...-.+|..+|..|..|+..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555655555556666555555554443
No 146
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=52.31 E-value=78 Score=24.37 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 121 AVQLRAEVQKLN-NLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 121 l~q~raE~q~L~-~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
|.|...|++.+- +.|..+.++|....+||.+++.|+
T Consensus 65 l~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 65 LAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555542 457788888888888888877665
No 147
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=52.17 E-value=21 Score=22.77 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 039268 160 PLLRAEIDGLHQEL 173 (276)
Q Consensus 160 pal~aEie~lrqEl 173 (276)
.+|+.||-.|+.|+
T Consensus 5 aalkqeiaalkkei 18 (33)
T 4dzn_A 5 AALKQEIAALKKEI 18 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 148
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=52.15 E-value=56 Score=32.93 Aligned_cols=38 Identities=16% Similarity=0.157 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ 157 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q 157 (276)
.|+...+-+..|++.|...-.++.=+ .+++.+++++.+
T Consensus 23 ~l~~~~q~~e~~~k~Le~~Qe~F~~~----y~~~~~~~~~~~ 60 (585)
T 1y1u_A 23 ELRLITQDTENELKKLQQTQEYFIIQ----YQESLRIQAQFA 60 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHhhHhHHh
Confidence 34444444444444444433333322 344444444443
No 149
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=52.14 E-value=1.6e+02 Score=27.93 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 039268 187 NIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 187 ~~e~~Eq~qaMEknlisMarE 207 (276)
-...+++.|.||..-|..-++
T Consensus 226 ~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 226 MEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777776666554
No 150
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=51.86 E-value=17 Score=33.37 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=33.3
Q ss_pred HhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHH
Q 039268 153 QADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNL 201 (276)
Q Consensus 153 ~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 201 (276)
....+++..|.++++.|+.|+.++...++-.+|++.+. .+.|+|++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r---l~~Lqk~~ 226 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER---LKRLQKSA 226 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHH
Confidence 45566788888888888888888888877777765444 44556665
No 151
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=51.38 E-value=1.4e+02 Score=26.83 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQ-TLQKDLAKLQAD 155 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq-~l~~eL~r~~ad 155 (276)
.++.=...+..++..++.....|+..++ .+.+.|.....|
T Consensus 85 tl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e 125 (350)
T 3aco_A 85 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKE 125 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666777777777777777665 344556555554
No 152
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=51.14 E-value=17 Score=29.52 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 160 PLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 160 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
-.|..+|..++.+|+.++.|+.|+++..-+.++.+ =++--+.+++
T Consensus 10 ~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~L---I~KWr~asq~ 54 (122)
T 3viq_A 10 LKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTL---IQKWKNAAQQ 54 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH---HHHHHHHHHH
Confidence 34567889999999999999999999987765543 3334444443
No 153
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=51.04 E-value=20 Score=31.54 Aligned_cols=49 Identities=12% Similarity=0.235 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039268 38 ALLEEELEIQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVI 86 (276)
Q Consensus 38 ~~LEe~l~~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~ 86 (276)
..++++|..-|-.|+.|..+|.+|..+--...+|+.+.+.+|+.+....
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678899999999999999998877666555555555555555555444
No 154
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=50.64 E-value=24 Score=24.84 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKL 152 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~ 152 (276)
+..+..+..++..|.....+|..+|..|..|+..+
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666666665554443
No 155
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.59 E-value=48 Score=25.76 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 039268 132 NNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 132 ~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElq 174 (276)
.....+|..+++.|.+|+.++. .|+|.+++-++
T Consensus 54 E~e~~~L~~e~~~L~~e~~~~~----------~e~d~~k~k~~ 86 (90)
T 2wt7_B 54 ENEKTQLIQQVEQLKQEVSRLA----------RERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 3333444444555555544444 55555555444
No 156
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.21 E-value=1.1e+02 Score=29.89 Aligned_cols=48 Identities=27% Similarity=0.209 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEID 167 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie 167 (276)
++..+-.+-++|...-++|.++...+++++.++...-..+.+|++|+.
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~ 81 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKE 81 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 555555555555555555555555555555444433333333333333
No 157
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=50.14 E-value=1.4e+02 Score=29.50 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhc--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRAT--EPLKKEAVQLRAEVQKLNNLRNELNGKV 142 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~--e~lk~El~q~raE~q~L~~~RqeL~~qv 142 (276)
-|.+++.+....+.+.-+...+. ++++++-.++.-|-+. ..+=+-+.+-+.||..|...--++..++
T Consensus 49 ~v~VQ~NV~~Ld~N~~~~~~~~n-----------e~~~~Vn~I~~~L~~~GD~~vi~qI~~n~~dI~~Lk~~~~~~~~~l 117 (487)
T 2bsg_A 49 TVSVLRNVEVLDKNIGILKTSLE-----------TANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEIL 117 (487)
T ss_pred hhhhhhhHHHHhhhHHHHHhhHH-----------HHHHHHHHHHHHHhccccHHHHHHHHhhHHHHHHHhcchhhhhhhh
Confidence 34444555555555444443333 3333333444433321 1133356677888888888888888888
Q ss_pred HHHHHHHHHHHhhhcchh--------HHHHHHHHHHHHHHH------------------HHhhhhhHHhhhHHHHHHHHH
Q 039268 143 QTLQKDLAKLQADNQQIP--------LLRAEIDGLHQELMH------------------ARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 143 q~l~~eL~r~~ad~qqip--------al~aEie~lrqElqr------------------~Raa~EyEKk~~~e~~Eq~qa 196 (276)
..++.++..+..|+-..- -++.+|.-+++||=. +..-|+-=...-..+-....+
T Consensus 118 ~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DING~p~pgs~~tGmK~rV~~Nt~~i~~~~~RIt~ 197 (487)
T 2bsg_A 118 NGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSE 197 (487)
T ss_pred hhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCCCCCcCCCCCCcceehhhhhhHHHHHhcccHHHH
Confidence 888888888888876622 346666666666522 111122222333444455677
Q ss_pred HHHH-----HHHHHHHHHHHHHHhhhc
Q 039268 197 MEKN-----LVSMAREVEKLRAELTNF 218 (276)
Q Consensus 197 MEkn-----lisMarEvEKLRaElana 218 (276)
+|++ +=++..||.+||+||=..
T Consensus 198 LE~~~~dSDVG~Lt~ev~~LR~ElG~~ 224 (487)
T 2bsg_A 198 LETKFIESDVGSLTIEVGNLREELGPK 224 (487)
T ss_pred HHHhcccCCchHHHHHHHHHHHHhCCC
Confidence 8877 457999999999998654
No 158
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=50.11 E-value=33 Score=25.23 Aligned_cols=56 Identities=30% Similarity=0.438 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh--------chhhHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA--------TEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra--------~e~lk~El~q~raE~q~ 130 (276)
.++|.|++.+--||.|-- .|.++-.+-..++-+|.||++ +|+|++|....|-|+|.
T Consensus 6 efkqrlaaiktrlqalgg--------seaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqa 69 (73)
T 2a3d_A 6 EFKQRLAAIKTRLQALGG--------SEAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA 69 (73)
T ss_dssp HHHHHHHHHHHHHHHCSS--------GGGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 456777777766655421 122233333445566777665 46777777766665553
No 159
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=49.60 E-value=54 Score=25.16 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 146 QKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 146 ~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
.+....+..++ -.|+++|+.|..|+..+|..|-
T Consensus 42 ~~r~~~Le~EN---~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 42 QHKVLELTAEN---ERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444 3456777777777777776653
No 160
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=49.49 E-value=72 Score=24.10 Aligned_cols=33 Identities=24% Similarity=0.469 Sum_probs=22.4
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
..+|.-|-.+-++||.+|..-.+||++|...+.
T Consensus 10 ~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 10 VSHDDALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555777888888888888888876655
No 161
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=49.37 E-value=60 Score=25.16 Aligned_cols=34 Identities=38% Similarity=0.513 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 142 VQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 142 vq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
|+.|++||+.+..+. -| +||-.-.+-|-++|+++
T Consensus 38 i~~Lt~eLq~A~~ea--Np---aeIA~~~~~L~qAraDL 71 (90)
T 4b6x_A 38 VNNLTDELQDAIDEA--NP---AEIANTSQQLRHARADL 71 (90)
T ss_dssp HHHHHHHHHHHHHTT--CH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CH---HHHHhHHHHHHHHHHHH
Confidence 677777777766544 23 55655666677777664
No 162
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=49.29 E-value=50 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=25.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
..|++|--+||.++...++|..+|.....
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999987653
No 163
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.19 E-value=84 Score=23.83 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 163 RAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAE 214 (276)
Q Consensus 163 ~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaE 214 (276)
+..++..+.||+-+|.+=+.-+++...+-+=+.-|+..-..+-..|+.|+.-
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666677777777777777777777777777777777777754
No 164
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=49.04 E-value=49 Score=25.89 Aligned_cols=100 Identities=18% Similarity=0.230 Sum_probs=52.7
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQ-QIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~q-qipal~aEie~lrqElqr~ 176 (276)
..++|++-.|...|+..+.++ .+..+...+.. ...=+.|-.+.+.+..+++..+.--+ -.|....+++.+..+++
T Consensus 6 ~~I~d~A~eL~~~I~~seEy~-~~k~A~~~l~~-D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~-- 81 (122)
T 2oeq_A 6 EPLHALARQLEQAIRASEPFQ-QLKRAYEDVRR-DETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQ-- 81 (122)
T ss_dssp CTTHHHHHHHHHHHHHSHHHH-HHHHHHHHHHT-CTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh--
Confidence 357888888888888888877 66666655443 11223334444444445444442222 12445555554444443
Q ss_pred HhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 177 RAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKL 211 (276)
Q Consensus 177 Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKL 211 (276)
..+.+-....-|..|-.|-.+|-+.
T Consensus 82 ----------~n~~v~~~~~Ae~~l~~ll~~I~~i 106 (122)
T 2oeq_A 82 ----------QNEKLARLMALEQQMSITIAEVQQI 106 (122)
T ss_dssp ----------TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444455566666665544
No 165
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=48.97 E-value=1.6e+02 Score=29.85 Aligned_cols=84 Identities=10% Similarity=0.228 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
.||..+...+++|+.| .+.+.+=+.+...+.-+..-++..-.....++++...++..+..|.-.|+++..+...+-
T Consensus 24 ~lr~~~q~~e~~ik~L----e~~Qe~f~~~yk~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~R~e~~~k~~~~l 99 (596)
T 1bg1_A 24 DVRKRVQDLEQKMKVV----ENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLL 99 (596)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665 444445455555554221111211222234667777788899999999999998777766
Q ss_pred HHHHHHHh
Q 039268 147 KDLAKLQA 154 (276)
Q Consensus 147 ~eL~r~~a 154 (276)
..+..++.
T Consensus 100 ~~~~~lq~ 107 (596)
T 1bg1_A 100 SAMEYVQK 107 (596)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 166
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=48.84 E-value=80 Score=23.48 Aligned_cols=24 Identities=4% Similarity=0.326 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 192 EQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 192 Eq~qaMEknlisMarEvEKLRaEl 215 (276)
.....+++.+-.+-.++++|+..|
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666555
No 167
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.72 E-value=1.2e+02 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=20.1
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 113 ATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 113 a~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
..+.++.|+..++.++-.+....+.|..+-+.|-+-
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777776665555555555444443333
No 168
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=48.07 E-value=28 Score=30.90 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 121 AVQLRAEVQKLNNLRNELNGKVQT 144 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qvq~ 144 (276)
|+|+|+|.-..++.-++|+.....
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~ 55 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNT 55 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555554444
No 169
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.62 E-value=92 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 164 AEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 164 aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
.++|.....+..+...++...|..
T Consensus 58 ~eld~~~e~l~~a~~kLe~~ek~~ 81 (101)
T 3u59_A 58 DEVEKYSESVKEAQEKLEQAEKKA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444554444444444433
No 170
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=47.01 E-value=1.3e+02 Score=30.21 Aligned_cols=36 Identities=17% Similarity=0.345 Sum_probs=27.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e 94 (276)
+.|-..|-++..+|.+.+..++.+......+....-
T Consensus 407 ~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~ 442 (863)
T 1sjj_A 407 KALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442 (863)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345567888888888888888888887777765443
No 171
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=46.95 E-value=19 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
++.++.+-..+|....+++..++..+..||.+++
T Consensus 62 ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 62 RIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333444444444444444444444443
No 172
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=46.80 E-value=87 Score=23.47 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 039268 164 AEIDGLHQELMHARAA 179 (276)
Q Consensus 164 aEie~lrqElqr~Raa 179 (276)
++|..|+-||.+.|+.
T Consensus 54 ~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 54 ELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4444555555555543
No 173
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=46.60 E-value=1e+02 Score=23.98 Aligned_cols=43 Identities=26% Similarity=0.177 Sum_probs=31.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHH
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEK 199 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 199 (276)
+-|..|...|+..++++..++..++.-++.-.+..-..+++|+
T Consensus 74 ~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 74 QFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677777777888888888877777777777777777764
No 174
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=46.47 E-value=93 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=19.5
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHhhhhh
Q 039268 155 DNQQIPLLRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 155 d~qqipal~aEie~lrqElqr~Raa~Ey 182 (276)
..+.+-.|..-|+.|++|+..+|..+|.
T Consensus 18 ~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 18 HSQLLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344555667778888888888887765
No 175
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=46.11 E-value=79 Score=26.36 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=12.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 039268 62 VEDRMAMQRELAAAKEELHRM 82 (276)
Q Consensus 62 aatHvaLrqeLaaaq~Elqrl 82 (276)
|.+=.+.||.|+..=-|++-.
T Consensus 38 assDa~vrq~Ia~LP~eVsd~ 58 (152)
T 4fla_A 38 ASGDATVRQKIASLPQEVQDV 58 (152)
T ss_dssp HHHHHHHHHHHHTSCGGGTCG
T ss_pred ccchHHHHHHHHcCCccccCH
Confidence 556667777777655554443
No 176
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=46.08 E-value=95 Score=23.54 Aligned_cols=41 Identities=22% Similarity=0.320 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNG---KVQTLQKDLAKLQADN 156 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~---qvq~l~~eL~r~~ad~ 156 (276)
.++..+.|.++|++.|....+||.. +++.+..+|.+-++++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999964 5666666665555444
No 177
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.77 E-value=1.1e+02 Score=24.11 Aligned_cols=21 Identities=10% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIGE 88 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~~ 88 (276)
|.+++..++.+|++|.....+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~ 23 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSD 23 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777554443
No 178
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.13 E-value=1e+02 Score=23.63 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.5
Q ss_pred HHHHHH
Q 039268 125 RAEVQK 130 (276)
Q Consensus 125 raE~q~ 130 (276)
.+||+.
T Consensus 20 eaEIqA 25 (81)
T 1wt6_A 20 EEEVLT 25 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344444
No 179
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=44.96 E-value=38 Score=28.39 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
.....++..+-.++.++...-+.....++
T Consensus 81 ~~~~~~~~~~~~~i~~~~~~i~~~~~~i~ 109 (279)
T 3c98_B 81 EKTKEELEELMSDIKKTANKVRSKLKSIE 109 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665544444443333
No 180
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.86 E-value=23 Score=21.89 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=13.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHH
Q 039268 60 RLVEDRMAMQRELAAAKEELHRM 82 (276)
Q Consensus 60 RLaatHvaLrqeLaaaq~Elqrl 82 (276)
||-....-|+||+++..-||-.|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 44444555667777766665443
No 181
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=44.69 E-value=16 Score=29.26 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 039268 139 NGKVQTLQKDLAKL 152 (276)
Q Consensus 139 ~~qvq~l~~eL~r~ 152 (276)
..+|+.|..+|.++
T Consensus 22 ~~~~~~l~~~l~~~ 35 (182)
T 3kqg_A 22 NTKIRALQGSLENM 35 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 182
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.68 E-value=1.6e+02 Score=25.70 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
|++|+|-++.. ...+.+++..+..+.++|.....+|.++++.+.++=..... +|-.-
T Consensus 123 i~elfd~~~~~------~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~-----------------~L~~K 179 (213)
T 1ik9_A 123 IRELIAYALDT------IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET-----------------DLYKR 179 (213)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 36666655443 33455666666666666666666666555555554222222 22222
Q ss_pred HhhhhhHHhhhHHHHH
Q 039268 177 RAAVDYEKKANIELME 192 (276)
Q Consensus 177 Raa~EyEKk~~~e~~E 192 (276)
=..+=.|||.++..+.
T Consensus 180 F~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 180 FILVLNEKKTKIRSLH 195 (213)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH
Confidence 3344578888877665
No 183
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=44.57 E-value=54 Score=22.88 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 039268 162 LRAEIDGLHQELMHARA 178 (276)
Q Consensus 162 l~aEie~lrqElqr~Ra 178 (276)
|+.+|..|+.|+..++.
T Consensus 41 L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 41 LQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 184
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=44.47 E-value=70 Score=24.01 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 143 QTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 143 q~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
+.+.+....+..++ -.|+.+|+.|..|+..+|.-|
T Consensus 39 ~e~~~r~~~L~~eN---~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 39 LETQHKVLELTAEN---ERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444 345688888888888888654
No 185
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=44.46 E-value=1.9e+02 Score=26.64 Aligned_cols=69 Identities=14% Similarity=0.159 Sum_probs=38.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh----chhhHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA----TEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra----~e~lk~El~q~raE~q 129 (276)
|...--.|+.++..-++..+.+...+.+.+..-+...+.+-...-.+..-|.+ .+.|++|+.+++.+++
T Consensus 121 l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 121 LKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666666655555555555544444432 2345556655555554
No 186
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.44 E-value=53 Score=24.21 Aligned_cols=13 Identities=38% Similarity=0.603 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 039268 162 LRAEIDGLHQELM 174 (276)
Q Consensus 162 l~aEie~lrqElq 174 (276)
|+.+|+.|+.|+.
T Consensus 55 Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 55 LRQKVRQLEEELR 67 (70)
T ss_dssp HTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555444
No 187
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=43.20 E-value=1.6e+02 Score=28.93 Aligned_cols=28 Identities=11% Similarity=0.250 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 191 MEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 191 ~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
-.+.+.+..-+.+..+.|.+|...+..-
T Consensus 162 ~~~i~~l~~~~~~~~~~i~~l~~~~~~~ 189 (461)
T 3ghg_B 162 PTNLRVLRSILENLRSKIQKLESDVSAQ 189 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555777778888888887744
No 188
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.19 E-value=1.3e+02 Score=28.77 Aligned_cols=48 Identities=6% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 039268 167 DGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNFDGR 221 (276)
Q Consensus 167 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElanae~r 221 (276)
..|..|+.+.-+ .-...-++++.++..|-+....|+.|...|..-+.+
T Consensus 87 kkml~~~~~~e~-------~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~ 134 (409)
T 1m1j_C 87 KKIIEEIIRYEN-------TILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESH 134 (409)
T ss_dssp HHHHHHHHHTHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-------HhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455556555422 122233556666666767777777777766555443
No 189
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.12 E-value=1.2e+02 Score=23.71 Aligned_cols=43 Identities=12% Similarity=0.289 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Q 039268 127 EVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGL 169 (276)
Q Consensus 127 E~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~l 169 (276)
+++.|....|.|..+++.+++.+..++.....+-.....|+.|
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666666666666666666665553333333333333
No 190
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=42.65 E-value=1.7e+02 Score=25.50 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 039268 169 LHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarE 207 (276)
.-+.+...|.- |+. .-.+.++.+|.||.+-|..-++
T Consensus 218 ~v~~~n~~~~~--~~~-~~~~~~~~~Q~lee~Rl~~lk~ 253 (312)
T 3abh_A 218 SLKELDQGTPQ--YME-NMEQVFEQCQQFEEKRLRFFRE 253 (312)
T ss_dssp HHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH--HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443 333 3456778888888877766655
No 191
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=42.58 E-value=26 Score=27.50 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhh
Q 039268 158 QIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 158 qipal~aEie~lrqElqr~Raa~E 181 (276)
++.-|..||+.+..+|.-.|+.|+
T Consensus 57 k~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 57 KLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555777777777777777765
No 192
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=41.85 E-value=1.2e+02 Score=23.39 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhhhh-hhhchhhHHHHHHHHHHHH
Q 039268 93 QEVHVRDLVEKGLKLEAD-LRATEPLKKEAVQLRAEVQ 129 (276)
Q Consensus 93 ~e~q~R~l~ek~~KmEAe-lra~e~lk~El~q~raE~q 129 (276)
+|+.|++=+++..|--.+ =+..+.+..||-.+...++
T Consensus 36 KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~ 73 (86)
T 1cxz_B 36 KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLD 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877776 4444555555544444333
No 193
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=41.77 E-value=1.7e+02 Score=25.38 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=40.8
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHH
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD---NQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad---~qqipal~aEie~lrqElq 174 (276)
++.+|..+++..+.+..-+..+..=++.-...-++++.-++.+..-+.++..+ -...-++..||+.|+.||.
T Consensus 12 ~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~ 86 (239)
T 3pwx_A 12 KLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIE 86 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777776666666666666666666666666554443333221 1223445555555555543
No 194
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.76 E-value=2.3e+02 Score=26.65 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhh
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa 179 (276)
.|+..+..-...|.+--++|....+.|.++|....++. ..+..+|.+|+=||..+|..
T Consensus 198 ~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 198 KEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEY---REIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccChHHHHHHHH
Confidence 36666666666777777777777777888866555554 46677888888888777763
No 195
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.70 E-value=78 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=16.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
+.|+.||..++..+++|...-+++.++++.+.+.|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554444444444444444443
No 196
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=41.43 E-value=1.1e+02 Score=26.17 Aligned_cols=46 Identities=11% Similarity=0.095 Sum_probs=26.5
Q ss_pred hhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 103 KGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 103 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
.+.+|.++++..+.+..-+..+..=++.-...-.+++.-++.+..-
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel 55 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEK 55 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667666666666666666665555555555555555555433
No 197
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=41.31 E-value=2.8e+02 Score=27.56 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
+.++|.+.+.|+-+...+-+++.+.-+..-.| .++.+ .++++|.+.+++.-..+-+++|-+.+.+..-++.-+.
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae---~~a~n---~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAA---NNAAN---AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555544444333333 22222 3467788888888888888877776666555554433
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhccC
Q 039268 197 ----MEKNLVSMAREVEKLRAELTNFDG 220 (276)
Q Consensus 197 ----MEknlisMarEvEKLRaElanae~ 220 (276)
-++.|...-.|..+..++++..++
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 233334444455545555554444
No 198
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=41.15 E-value=65 Score=29.89 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH----HHHhhhcchhHHHHHHHHHHHHHH
Q 039268 115 EPLKKEAVQLRAEVQ----KLNNLRNELNGKVQTLQKDLA----KLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 115 e~lk~El~q~raE~q----~L~~~RqeL~~qvq~l~~eL~----r~~ad~qqipal~aEie~lrqElq 174 (276)
+.|+..+.+.+..++ .|..+|..|......+..... .+.++...|+.|+.+|+.++.++.
T Consensus 126 ~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 126 TDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 444444444444444 344455555555555555433 344556667777777777777776
No 199
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=41.10 E-value=49 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.358 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 142 VQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 142 vq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
+..|..++.+.+.++.+||.|++.++--+.....=|++=|
T Consensus 40 ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaRE 79 (96)
T 3fx0_A 40 IDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQARE 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667778888888888888888887777776666633
No 200
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=41.05 E-value=98 Score=24.32 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=12.1
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhhhhh
Q 039268 84 LVIGEIRAEQEVHVRDLVEKGLKLEA 109 (276)
Q Consensus 84 ~~~~~i~ae~e~q~R~l~ek~~KmEA 109 (276)
+.....+.|-+.+|..|-.++.+||.
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444555554
No 201
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.87 E-value=2.2e+02 Score=26.26 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 039268 158 QIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 158 qipal~aEie~lrqElqr~R 177 (276)
+|..|.++|+.++.|+.+.|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 451 EITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34445556666666666555
No 202
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.61 E-value=26 Score=33.38 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQ 143 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq 143 (276)
++-.++..+++.|.+.|..++.++.
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~sk~i~ 61 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLSKEIG 61 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 203
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=40.38 E-value=1.2e+02 Score=26.61 Aligned_cols=48 Identities=25% Similarity=0.224 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVD 181 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 181 (276)
++.-+.+++..|++|++.-..|+.+++.. ..||+.|+.+++.++....
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k-----------------~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTK-----------------ATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhh
Confidence 44455566666666555544455444432 2556666666666666653
No 204
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=39.42 E-value=6.2 Score=37.52 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
-+++..+..++|++++..= .+||+.+-++|...-++|..+...+.++|...+ .+|+..+.+|..-
T Consensus 324 ~~~~~~~~~~~e~~~~~~f-----~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~----------~~l~~~~~~~~~~ 388 (418)
T 2qag_C 324 RREHVAKMKKMEMEMEQVF-----EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQH----------KELEEKRRQFEDE 388 (418)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 4455666777777766531 145666777777777788777777777766655 4556666666666
Q ss_pred HhhhhhHHh
Q 039268 177 RAAVDYEKK 185 (276)
Q Consensus 177 Raa~EyEKk 185 (276)
.++|+.++.
T Consensus 389 ~~~~~~~~~ 397 (418)
T 2qag_C 389 KANWEAQQR 397 (418)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 666555443
No 205
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=38.58 E-value=1.9e+02 Score=24.74 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 039268 121 AVQLRAEVQKLNNLRNELNGKV-QTLQKDLAKLQADNQQ-IPLLRAEIDGLHQELMHARAAVDYEKKAN 187 (276)
Q Consensus 121 l~q~raE~q~L~~~RqeL~~qv-q~l~~eL~r~~ad~qq-ipal~aEie~lrqElqr~Raa~EyEKk~~ 187 (276)
...+..++..++.....++..+ ..+.+.|.....+..+ .-.+..++..+.++++.....++--|+.|
T Consensus 78 w~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y 146 (305)
T 2efl_A 78 FISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRF 146 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554 4444555444444331 12233344444444444444443333333
No 206
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=38.38 E-value=97 Score=21.43 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=25.3
Q ss_pred hhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 178 AAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 178 aa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
.-|---||.|..+---.|.+||=+..+--||-.|.-|+++-
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556665555556677777777777777777777654
No 207
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=38.28 E-value=2.1e+02 Score=27.94 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKL 152 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~ 152 (276)
.++..+-.+-++|....++|.++...+++++.++
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555555543
No 208
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=38.03 E-value=42 Score=25.10 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 118 KKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 118 k~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
+.||.++-.+|.+|.....+|..++..-. -...|...+..+.++++.+.++|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~----~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADAS----FFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTT----GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc----cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666655544444444332100 01123444455556666666666554
No 209
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=37.97 E-value=38 Score=28.11 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----c----chhHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN----Q----QIPLLRAEIDGLHQELMHARAAVDYEKKA 186 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~----q----qipal~aEie~lrqElqr~Raa~EyEKk~ 186 (276)
|=.||+..++-+..=...++-|..+...+++.+.-..+++ | ++.-|+-.+++|..+|.==|.+...||..
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrk 84 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRK 84 (130)
T ss_dssp --------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346776666555555556666666666666666665555 2 23344445556666665555555555554
No 210
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=37.96 E-value=2.4e+02 Score=25.75 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=27.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 039268 59 RRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQ 93 (276)
Q Consensus 59 qRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~ 93 (276)
+.|-..|-+|..+|.+.+..++.+......+....
T Consensus 168 ~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~ 202 (476)
T 1hci_A 168 RALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD 202 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCc
Confidence 34557788999999999999999988888776654
No 211
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.76 E-value=2.5e+02 Score=26.01 Aligned_cols=31 Identities=23% Similarity=0.084 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhHHHHHHHH
Q 039268 165 EIDGLHQELMHARAAVDYEKKANIELMEQRQ 195 (276)
Q Consensus 165 Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 195 (276)
|-+.++.|++..=.+++.=+.++.+.+.|.+
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (487)
T 3oja_A 450 ENARLKKLNGEADLALASANATLQELVVREQ 480 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhhhHhcccHHHHHHHHHH
Confidence 3333344444333333333334444444433
No 212
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=37.35 E-value=4e+02 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=10.8
Q ss_pred chhhHHHHHHH-HHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRE-LAAAKEELHRMN 83 (276)
Q Consensus 61 LaatHvaLrqe-Laaaq~Elqrl~ 83 (276)
-++.|.|.+.| -+...-|.|+|.
T Consensus 671 a~Ar~~A~~~eQea~g~Lerqki~ 694 (861)
T 2zuo_A 671 AAAKHEAQRLEQEARGRLERQKIL 694 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhhhHHHHHHH
Confidence 34556665444 233344455543
No 213
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=37.19 E-value=74 Score=29.66 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhhh
Q 039268 97 VRDLVEKGLKLEA 109 (276)
Q Consensus 97 ~R~l~ek~~KmEA 109 (276)
+..|.+++.++|.
T Consensus 7 ~~~~~~~~~~~e~ 19 (323)
T 1lwu_C 7 VQKILEEVRILEQ 19 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666666665
No 214
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=36.89 E-value=1.9e+02 Score=24.39 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=10.7
Q ss_pred ccccccchhhHHHHHHHH
Q 039268 55 LGDNRRLVEDRMAMQREL 72 (276)
Q Consensus 55 l~dNqRLaatHvaLrqeL 72 (276)
+....+++..|..|-+.|
T Consensus 79 ~~~~e~~a~~h~~~a~~l 96 (276)
T 2v0o_A 79 KTSTEKLANCHLDLVRKL 96 (276)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455667776666666
No 215
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=36.82 E-value=1.9e+02 Score=24.44 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQA 196 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 196 (276)
++.++.++++++.. ..+++....+++.|.+.=.++--.-+.++|..+.++..+++.+
T Consensus 58 ~~~~l~~a~a~l~~-------a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l---------------- 114 (277)
T 2f1m_A 58 YQATYDSAKGDLAK-------AQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAV---------------- 114 (277)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH----------------
Confidence 34455555554433 2233445555666666544444445567777666666555443
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCC
Q 039268 197 MEKNLVSMAREVEKLRAELTNFDGRP 222 (276)
Q Consensus 197 MEknlisMarEvEKLRaElanae~r~ 222 (276)
-+.-.+++.++..+.+..=++
T Consensus 115 -----~~a~a~l~~a~~~l~~~~I~A 135 (277)
T 2f1m_A 115 -----TAAKAAVETARINLAYTKVTS 135 (277)
T ss_dssp -----HHHHHHHHHHHHHHHTTEECC
T ss_pred -----HHHHHHHHHHHHHhhcCEEEC
Confidence 222345667777777777665
No 216
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=36.63 E-value=1.8e+02 Score=23.94 Aligned_cols=62 Identities=8% Similarity=0.079 Sum_probs=47.6
Q ss_pred hcchhHHHHHHHHHHHHHHHH----HhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 156 NQQIPLLRAEIDGLHQELMHA----RAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTN 217 (276)
Q Consensus 156 ~qqipal~aEie~lrqElqr~----Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElan 217 (276)
++.+-.|..|+..+-++...+ |...+.-+..+.+..+-+-.|=.+++...+++-..=..+++
T Consensus 65 i~~v~~l~~e~~~~a~~~~~Gdl~~R~d~~~~~G~~~~l~~~vN~~~~~~~~~~~~~~~v~~~~a~ 130 (175)
T 3lnr_A 65 LQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQ 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCCCCGGGCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcccccCccccChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 334556667777777777765 66666677888999999999999999999988777777765
No 217
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=36.24 E-value=1.7e+02 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 194 RQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 194 ~qaMEknlisMarEvEKLRaElana 218 (276)
.+.|+.++=-..+-|+||+.+|.+.
T Consensus 76 ~~~le~k~Kk~~~kV~Kl~~dl~~r 100 (109)
T 2fcw_A 76 HALLEGRTKELGYTVKKHLQDLSGR 100 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888899999999998764
No 218
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=35.79 E-value=90 Score=29.41 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHH
Q 039268 37 PALLEEELEIQH 48 (276)
Q Consensus 37 P~~LEe~l~~Q~ 48 (276)
..++|+.+..|.
T Consensus 170 ~~~f~~q~~~~e 181 (373)
T 3hhm_B 170 IKIFEEQCQTQE 181 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345566555554
No 219
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.40 E-value=75 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039268 161 LLRAEIDGLHQELMHARAA 179 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa 179 (276)
.|+.+|+.|+.|++.++.-
T Consensus 41 ~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 41 ALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445666666666655543
No 220
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=34.37 E-value=66 Score=31.85 Aligned_cols=21 Identities=10% Similarity=0.173 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHH
Q 039268 74 AAKEELHRMNLVIGEIRAEQE 94 (276)
Q Consensus 74 aaq~Elqrl~~~~~~i~ae~e 94 (276)
.---|||.|.+....-++-+.
T Consensus 297 ~d~~e~qqm~~~a~e~~~~~~ 317 (575)
T 2i1j_A 297 PDTIDVQQMKAQAREEKLAKQ 317 (575)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 334445555544444444444
No 221
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=34.34 E-value=2.2e+02 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039268 188 IELMEQRQAMEKNLVSMARE 207 (276)
Q Consensus 188 ~e~~Eq~qaMEknlisMarE 207 (276)
.+.++++|.||...+...++
T Consensus 215 ~~~~~~lQ~le~~r~~~lk~ 234 (305)
T 2efl_A 215 PNIFQKIQEMEERRIVRMGE 234 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777666555444
No 222
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=34.21 E-value=1.4e+02 Score=22.06 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Q 039268 129 QKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLL 162 (276)
Q Consensus 129 q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal 162 (276)
+.+...-..|.++++.+..|+++...|-|.+-.+
T Consensus 8 ~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Llni 41 (74)
T 2xv5_A 8 DTSRRLLAEKEREMAEMRARMQQQLDEYQELLDI 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444333333
No 223
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=33.83 E-value=3.3e+02 Score=27.96 Aligned_cols=40 Identities=25% Similarity=0.201 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQA 154 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~a 154 (276)
..++++...+...+..|.-.|+++..+.+.+-..+..++.
T Consensus 190 ~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l~~~~~lq~ 229 (683)
T 1yvl_A 190 SDQKQEQLLLKKMYLMLDNKRKEVVHKIIELLNVTELTQN 229 (683)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999888777666555554
No 224
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.81 E-value=1.8e+02 Score=23.23 Aligned_cols=69 Identities=23% Similarity=0.306 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Q 039268 94 EVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQEL 173 (276)
Q Consensus 94 e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqEl 173 (276)
|...|+|-.+..+|.. -++.+|..+ .....+....+..|.+||..++.....+-.=..+|+----+|
T Consensus 2 Ek~~rdL~~~~~~L~~---E~e~~k~K~----------~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 2 EQRNRDLQADNQRLKY---EVEALKEKL----------EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 4566777777777776 234444444 444455555566666666666666655555455554444444
Q ss_pred HH
Q 039268 174 MH 175 (276)
Q Consensus 174 qr 175 (276)
-|
T Consensus 69 ER 70 (111)
T 2v66_B 69 ER 70 (111)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=33.28 E-value=83 Score=29.86 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI 166 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi 166 (276)
.++..+-.+-+++...-++|.++...+++++.++..+-+...+|++++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~ 77 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRV 77 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHH
Confidence 355555555555555555555555555555444333333333333333
No 226
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=32.84 E-value=48 Score=21.65 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhhHHhhhHHHHHHHHHHH
Q 039268 169 LHQELMHARAAVDYEKKANIELMEQRQAME 198 (276)
Q Consensus 169 lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 198 (276)
||...+--.+.||.-|+-|+-+-+|..++|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 566666667777777888888888877664
No 227
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=32.68 E-value=2.6e+02 Score=26.06 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKL 131 (276)
Q Consensus 119 ~El~q~raE~q~L 131 (276)
...+|+..++++|
T Consensus 24 ~~~eql~~~i~~L 36 (302)
T 3ibp_A 24 QEQEQLQSRIQSL 36 (302)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 228
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=32.46 E-value=1.7e+02 Score=24.40 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Q 039268 142 VQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHA 176 (276)
Q Consensus 142 vq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~ 176 (276)
|+.+++.+..+.+.+.++|.=..|...+-+|+.+.
T Consensus 68 v~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~ 102 (140)
T 1xaw_A 68 LDEINKELSRLDKELDDYREESEEYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33333333333333333333334444455566664
No 229
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.78 E-value=87 Score=22.34 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 039268 164 AEIDGLHQE 172 (276)
Q Consensus 164 aEie~lrqE 172 (276)
+||+.|+++
T Consensus 51 ~ev~~Lr~~ 59 (63)
T 2dgc_A 51 NEVARLKKL 59 (63)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 344444443
No 230
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=31.59 E-value=88 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039268 128 VQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 128 ~q~L~~~RqeL~~qvq~l~~e 148 (276)
|+|=..+.|+....+...+++
T Consensus 45 I~KWr~asq~aaeeLf~~~~~ 65 (122)
T 3viq_A 45 IQKWKNAAQQAAEVLFKPMAE 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 677777888888777777766
No 231
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=31.39 E-value=1.5e+02 Score=21.64 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
++|-.|+.|.|.....+..+-+.++-..+.....-+.+.++.+.+-.+=-|+++.-..|..+
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 232
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=31.24 E-value=1.4e+02 Score=23.44 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHH
Q 039268 80 HRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRA 126 (276)
Q Consensus 80 qrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra 126 (276)
|.|+.+...+...-|.-..+|-+.+..|+.++...|.+-.++..+|.
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555555555555555555555544444444444443333
No 233
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.86 E-value=58 Score=22.86 Aligned_cols=15 Identities=7% Similarity=0.226 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 039268 163 RAEIDGLHQELMHAR 177 (276)
Q Consensus 163 ~aEie~lrqElqr~R 177 (276)
..+|..|+.|+..++
T Consensus 42 ~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 42 ASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555554443
No 234
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=30.70 E-value=1.6e+02 Score=21.64 Aligned_cols=52 Identities=27% Similarity=0.454 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHHhhh
Q 039268 127 EVQKLNNLRNELNGKVQTLQKDLAKLQADN---QQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 127 E~q~L~~~RqeL~~qvq~l~~eL~r~~ad~---qqipal~aEie~lrqElqr~Raa~ 180 (276)
|++.....|.||.++|=.+..||+-.++++ -.+|.+- +|+|+--+.+-|.-|
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~l--l~a~k~aikkqr~~i 58 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLL--LEAMKVAVRKQRKKI 58 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHH--HHHHHHHHHHHHHHH
Confidence 566778889999999999999999999876 3455543 456655555555443
No 235
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.61 E-value=71 Score=20.83 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 039268 68 MQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 68 LrqeLaaaq~Elqrl~~~~~ 87 (276)
+|+..++-++||--|...+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~ 24 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNA 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHH
Confidence 35666666777766666665
No 236
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=30.60 E-value=62 Score=30.15 Aligned_cols=44 Identities=23% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 100 LVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 100 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
++|.+.++|+ .+..+...+.+++..+..|...-++|..+|..++
T Consensus 2 ~~~~~~~lE~---~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~ 45 (319)
T 1fzc_C 2 MLEEIMKYEA---SILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLE 45 (319)
T ss_dssp --------CT---TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888 4444455666666656555544444444444443
No 237
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=30.56 E-value=1.6e+02 Score=28.57 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=42.1
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcchhHHHHHHHHHHHHHHHHHh
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQAD---NQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad---~qqipal~aEie~lrqElqr~Ra 178 (276)
-.+.+|.++++..+....-+....+=+|.-...-++.+.-+|.+..=..++..+ -...-+|..||+.|+.||.+.=.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346688899999988888888888888887888888888887765433333332 12455677788888888777654
No 238
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=30.49 E-value=2.9e+02 Score=28.42 Aligned_cols=47 Identities=23% Similarity=0.431 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEI 166 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEi 166 (276)
+|...-.-|+.+...|.+|+.++|..++.......+..+...+-++|
T Consensus 11 dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 57 (706)
T 3fhn_A 11 DLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDI 57 (706)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 56777888999999999999999999997666666666666555555
No 239
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=30.43 E-value=1.5e+02 Score=21.16 Aligned_cols=7 Identities=29% Similarity=0.449 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 039268 167 DGLHQEL 173 (276)
Q Consensus 167 e~lrqEl 173 (276)
+.|.-||
T Consensus 66 q~L~~el 72 (77)
T 3trt_A 66 QSLTMEV 72 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 240
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.26 E-value=74 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 190 LMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 190 ~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
+.+..+.+...+-.+-+|+++|+.++
T Consensus 30 l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444433
No 241
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=30.11 E-value=1.7e+02 Score=21.78 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHH
Q 039268 124 LRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAM 197 (276)
Q Consensus 124 ~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 197 (276)
+..+|..|.....||..++..+.+|+.+..- .|++. .++ .|||+.+.|.+=-.||.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~e---------ee~~~-------~~~--~lek~L~~E~~LK~QAV 59 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKE---------EEISN-------LKA--AFEKNINTERTLKTQAV 59 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHT-------HHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH-------HHH--HHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888777651 33332 222 37788777776555554
No 242
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=29.97 E-value=81 Score=20.40 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 66 MAMQRELAAAKEELHRMNLVIGEIR 90 (276)
Q Consensus 66 vaLrqeLaaaq~Elqrl~~~~~~i~ 90 (276)
.+++.|-++...|+|.+..-|.+++
T Consensus 5 aaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777766666543
No 243
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=29.44 E-value=2.4e+02 Score=23.33 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKD 148 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~e 148 (276)
...+.-+++.+....-+..-.+|..+.++
T Consensus 111 ~~~~~l~e~e~~leeyK~Kl~rv~~vkke 139 (152)
T 4fla_A 111 NQKDVLSEKEKKLEEYKQKLARVTQVRKE 139 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555
No 244
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=29.33 E-value=4.5e+02 Score=26.44 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 67 AMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQ 146 (276)
Q Consensus 67 aLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~ 146 (276)
.||.-.....+||+.| .+++.|=+.+..++..+ .. +.--.....++++..++...+..|.-.|+++..+.+.+-
T Consensus 13 ~l~~~~q~~e~~~k~L----e~~Qe~f~~~y~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~R~~~~~~~~~~~ 86 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSL----EDLQDEYDFKCKTLQNR-EH-ETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELL 86 (575)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT-TC---------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHhh-hh-hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665 45555666666666522 11 100012245677778888889999999999988777766
Q ss_pred HHHHHHH
Q 039268 147 KDLAKLQ 153 (276)
Q Consensus 147 ~eL~r~~ 153 (276)
..+..++
T Consensus 87 ~~~~~lq 93 (575)
T 1bf5_A 87 NVTELTQ 93 (575)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544444
No 245
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=29.27 E-value=3.7e+02 Score=27.17 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=16.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhhHHh
Q 039268 157 QQIPLLRAEIDGLHQELMHARAAVDYEKK 185 (276)
Q Consensus 157 qqipal~aEie~lrqElqr~Raa~EyEKk 185 (276)
..+..|+.|+..+++++...++..+.|+.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (854)
T 1qvr_A 430 ERLKAIEAEIAKLTEEIAKLRAEWERERE 458 (854)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666555555555543
No 246
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=29.15 E-value=1.9e+02 Score=22.10 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK 151 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r 151 (276)
+|.-++.++.|......--..+-.++..+.+...+
T Consensus 7 IKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~ 41 (101)
T 3u1c_A 7 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQ 41 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444333333344444444333333
No 247
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.80 E-value=1.3e+02 Score=28.06 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.5
Q ss_pred Hhhhhhhh
Q 039268 102 EKGLKLEA 109 (276)
Q Consensus 102 ek~~KmEA 109 (276)
+|+.+|..
T Consensus 5 ~~~~~~~~ 12 (323)
T 1lwu_C 5 KTVQKILE 12 (323)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 248
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=28.67 E-value=1.9e+02 Score=21.89 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=15.3
Q ss_pred HHHHHHhhhhhhhhhhhchhhHHHHHHHHHHH
Q 039268 97 VRDLVEKGLKLEADLRATEPLKKEAVQLRAEV 128 (276)
Q Consensus 97 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~ 128 (276)
+-++++++..+..+|......-.+|..+|..+
T Consensus 7 m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~ 38 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAI 38 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455554444444444555555533
No 249
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=28.34 E-value=3.4e+02 Score=25.33 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=41.1
Q ss_pred HhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHH
Q 039268 102 EKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN---QQIPLLRAEIDGLHQELMH 175 (276)
Q Consensus 102 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~---qqipal~aEie~lrqElqr 175 (276)
-.+.+|..+++..+.+..-+..+.+=++.-...-++.+.-++.+..-+.++..+. ...-++..||+.|+.||.+
T Consensus 29 aia~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~ 105 (326)
T 3k8w_A 29 AISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQR 105 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777777777777766666666666666666666553333332211 1233444555555555443
No 250
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=28.22 E-value=2.8e+02 Score=23.65 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 039268 164 AEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 164 aEie~lrqElqr~Raa~Ey 182 (276)
.+....+||+|--|+|||-
T Consensus 38 e~y~r~sqEiq~Kr~AieA 56 (170)
T 3l4q_C 38 EEYTRTSQELQMKRTAIEA 56 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3344444555555555443
No 251
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=27.99 E-value=2.7e+02 Score=23.33 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=26.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039268 60 RLVEDRMAMQRELAAAKEELHRMNLVIGEIRAE 92 (276)
Q Consensus 60 RLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae 92 (276)
.|...|-+|..+|.+-+..++.+......+...
T Consensus 52 ~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~ 84 (250)
T 1quu_A 52 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNEL 84 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466778899999999888888888887776654
No 252
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.81 E-value=2.2e+02 Score=22.36 Aligned_cols=61 Identities=33% Similarity=0.437 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcc----------hh------HHHHHHHHHHHHHHHHHhhh
Q 039268 120 EAVQLRAEVQKLNNLRNELNGKVQTLQKDLAK--LQADNQQ----------IP------LLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 120 El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r--~~ad~qq----------ip------al~aEie~lrqElqr~Raa~ 180 (276)
++..++-+|..|...++.|..++..|.-+|.+ +++|.-. =| ..+.+++.|+.|+.++|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555666666666666666555 2223211 12 23457788888888777654
No 253
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=27.56 E-value=1.8e+02 Score=23.50 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhh
Q 039268 145 LQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAV 180 (276)
Q Consensus 145 l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 180 (276)
|.+++...+..+..++.++++++.|++++...-..+
T Consensus 3 L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~L 38 (147)
T 2rjz_A 3 LKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQL 38 (147)
T ss_dssp HHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666777777888888877777776655554
No 254
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=27.46 E-value=2.3e+02 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQK 147 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~ 147 (276)
|...+..+..++..|...++.|..+++...+
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544443
No 255
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=27.13 E-value=3.2e+02 Score=23.99 Aligned_cols=40 Identities=18% Similarity=0.259 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhh
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQT-LQKDLAKLQADN 156 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~-l~~eL~r~~ad~ 156 (276)
++.=...+..++..++.....|+..+.. +...|.....|.
T Consensus 77 l~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~ 117 (337)
T 2x3v_A 77 LERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDA 117 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777777777777777743 666677666654
No 256
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=27.08 E-value=1.2e+02 Score=27.01 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKL 152 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~ 152 (276)
+|+++.++...+++....++.+++++....+.++.+
T Consensus 176 lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 176 VKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666655555443
No 257
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.86 E-value=2.3e+02 Score=22.13 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhhh-------HHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 039268 167 DGLHQELMHARAAVDY-------EKKANIELMEQRQAMEKNLVSMARE-VEKLRAELT 216 (276)
Q Consensus 167 e~lrqElqr~Raa~Ey-------EKk~~~e~~Eq~qaMEknlisMarE-vEKLRaEla 216 (276)
|.|+.|.-.+++.|+- +.+.+.+.++....+=|+++.-+.| |..|+.-|.
T Consensus 23 d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 23 ELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 5556666666666654 4467788888888888888887777 777776654
No 258
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=26.58 E-value=56 Score=29.11 Aligned_cols=13 Identities=31% Similarity=0.184 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQ 129 (276)
Q Consensus 117 lk~El~q~raE~q 129 (276)
++.++.|+..|.+
T Consensus 153 ~~~~i~ql~~En~ 165 (250)
T 2ve7_C 153 SADKMQQLNAAHQ 165 (250)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 259
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.17 E-value=2.1e+02 Score=21.54 Aligned_cols=33 Identities=12% Similarity=0.184 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDL 149 (276)
Q Consensus 117 lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL 149 (276)
|+.|+..+|..++.+...-+.|..+-..+..||
T Consensus 32 Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 32 NQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444444444444443
No 260
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=25.90 E-value=5.5e+02 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH
Q 039268 136 NELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELM 174 (276)
Q Consensus 136 qeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElq 174 (276)
.++..+++.+...++....|++++-.+..+.+=-.++++
T Consensus 140 ~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~ 178 (683)
T 1yvl_A 140 KELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQ 178 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554444443
No 261
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=25.88 E-value=3.1e+02 Score=23.38 Aligned_cols=54 Identities=17% Similarity=0.398 Sum_probs=26.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHh
Q 039268 115 EPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARA 178 (276)
Q Consensus 115 e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Ra 178 (276)
+.+..-...+.+=+..|...++.|...+.....+ +. .+-.++.+|+=||+.++.
T Consensus 92 ~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~-------~r---elERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 92 QRILLNSERLKSRIAEIHESRTKLEQELRAQASD-------NR---EIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHHhcCHHHHHHHH
Confidence 3344444444554555555555555444444333 32 344555666666665553
No 262
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=25.49 E-value=3.3e+02 Score=26.23 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=55.7
Q ss_pred HHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cchhHHHHHHHHHHHHHHHHH
Q 039268 101 VEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN---QQIPLLRAEIDGLHQELMHAR 177 (276)
Q Consensus 101 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~---qqipal~aEie~lrqElqr~R 177 (276)
+-.+.+|.++++..+....-+..+.+=+|.-...-++.+.-+|.+..-+.++..+. ...-++..|++.|+.||.+.=
T Consensus 47 ~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 126 (494)
T 1ucu_A 47 QAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 126 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888878777777777777777777777777777665444443222 345677889999999998876
Q ss_pred hh
Q 039268 178 AA 179 (276)
Q Consensus 178 aa 179 (276)
..
T Consensus 127 n~ 128 (494)
T 1ucu_A 127 GQ 128 (494)
T ss_dssp HH
T ss_pred hh
Confidence 53
No 263
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=25.48 E-value=11 Score=27.59 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhHHH
Q 039268 161 LLRAEIDGLHQELMHARAAVDYEKKANIEL 190 (276)
Q Consensus 161 al~aEie~lrqElqr~Raa~EyEKk~~~e~ 190 (276)
....||..|+.|+.+++..+++.||+..++
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999987664
No 264
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=25.45 E-value=3.5e+02 Score=26.50 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=17.9
Q ss_pred ChhhhHHHHHHHHHHHhhh--ccccccchhhHHHHHHHHHHHHHHHHHH
Q 039268 36 HPALLEEELEIQHAEIQRL--LGDNRRLVEDRMAMQRELAAAKEELHRM 82 (276)
Q Consensus 36 ~P~~LEe~l~~Q~~EiqrL--l~dNqRLaatHvaLrqeLaaaq~Elqrl 82 (276)
....||+.|-.-...|+.+ +.. -+...+|..||+.+..--+||...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~e~~~~ 67 (526)
T 2de0_X 20 RVRVLEEQLVKAKEQIENYKKQTR-NGLGKDHEILRRRIENGAKELWFF 67 (526)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHhhhhhhhhHHhcccC-CCCChHHHHHHHHHHHhHHHHHHH
Confidence 4466888775554445433 222 466789999999988887777554
No 265
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.35 E-value=2.1e+02 Score=21.26 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 127 EVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 127 E~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
-+|.+-.--++|-.+|+.+.++|...+
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~ 34 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQ 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666665555
No 266
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=25.19 E-value=1.8e+02 Score=27.56 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 63 EDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 63 atHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
..|+.|+.||...++.+.-|..-+.
T Consensus 3 ~~~~~l~~el~~~~~~~~~l~~~~~ 27 (412)
T 3u06_A 3 SMHAALSTEVVHLRQRTEELLRCNE 27 (412)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665555544444443
No 267
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.05 E-value=1.8e+02 Score=21.30 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 039268 162 LRAEIDGLHQELMHARAAVDY 182 (276)
Q Consensus 162 l~aEie~lrqElqr~Raa~Ey 182 (276)
|+.-+|.|..||......++-
T Consensus 37 L~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 37 NNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555444444443
No 268
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=24.83 E-value=3.6e+02 Score=25.45 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 130 KLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 130 ~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
.|-..|.++..+++.+..+-..+.
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~s 55 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVA 55 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333
No 269
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=24.77 E-value=1.5e+02 Score=24.27 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=30.5
Q ss_pred HHHHHHHHHH--HHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhH
Q 039268 141 KVQTLQKDLA--KLQADNQQIPLLRAEIDGLHQELMHARAAVDYE 183 (276)
Q Consensus 141 qvq~l~~eL~--r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 183 (276)
+++.+..-|+ ..+.|.--|..+..|++.|..||.+++.--.|+
T Consensus 18 rLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 18 RLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 345677778899999999999999998875544
No 270
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.58 E-value=39 Score=30.11 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=34.8
Q ss_pred HHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHhhhhhhhhh
Q 039268 46 IQHAEIQRLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQE---VHVRDLVEKGLKLEADL 111 (276)
Q Consensus 46 ~Q~~EiqrLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e---~q~R~l~ek~~KmEAel 111 (276)
.+...+..++..+.-+.+.+-.|..|+...+.+|..|........+|-. .+.-.||.++-|+.-+.
T Consensus 138 ~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~p~~k~~~qly~~vt~i~w~~ 206 (250)
T 2ve7_C 138 ACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEY 206 (250)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------CTTTHHHHHHHHHHHCCEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhceeec
Confidence 4444566667777777777777777777766666666666665555544 56666777776666544
No 271
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=24.11 E-value=1.7e+02 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=17.0
Q ss_pred hccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 039268 54 LLGDNRRLVEDRMAMQRELAAAKEELHRMNLV 85 (276)
Q Consensus 54 Ll~dNqRLaatHvaLrqeLaaaq~Elqrl~~~ 85 (276)
-|.+|..|-..-..++.|++..+.|+..|...
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555433
No 272
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=23.72 E-value=1.6e+02 Score=23.92 Aligned_cols=41 Identities=5% Similarity=0.086 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADN 156 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~ 156 (276)
.+++++.++++++..+.......+-+|+....++...-+|+
T Consensus 42 ~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~L 82 (118)
T 2y39_A 42 EIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDL 82 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444445555555554444444
No 273
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=23.44 E-value=4.6e+02 Score=26.28 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 116 PLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 116 ~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
-.++|+-++.++++.+.+.+.-++.+.+...+.|..+.
T Consensus 360 dArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~ 397 (602)
T 1cii_A 360 DARNKITSAESAVNSARNNLSARTNEQKHANDALNALL 397 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777766543
No 274
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.39 E-value=2.1e+02 Score=20.63 Aligned_cols=42 Identities=10% Similarity=0.208 Sum_probs=23.2
Q ss_pred HHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 100 LVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 100 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
|..=+...|..|.+.+++-.++..+..-++++..+..++.+.
T Consensus 14 l~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~ 55 (118)
T 3uul_A 14 VLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAH 55 (118)
T ss_dssp HHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555556666666666655555555544
No 275
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.75 E-value=15 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 039268 66 MAMQRELAAAKEEL 79 (276)
Q Consensus 66 vaLrqeLaaaq~El 79 (276)
-+|.|.+++.+|-|
T Consensus 10 daleqkiaalkqki 23 (28)
T 3ra3_A 10 DALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 276
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=22.70 E-value=2.4e+02 Score=21.08 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhh
Q 039268 65 RMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRA 113 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra 113 (276)
.--|...|-.-|.||-+|+..++++++--.-+ .+-..|||.+++.
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKY----telnKKLe~~~~~ 49 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKY----VDITKKLEDQNLN 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34466778888999999999999988865432 3445567665533
No 277
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.03 E-value=77 Score=24.40 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 53 RLLGDNRRLVEDRMAMQRELAAAKEELHRMNLVIG 87 (276)
Q Consensus 53 rLl~dNqRLaatHvaLrqeLaaaq~Elqrl~~~~~ 87 (276)
.-|.+|..|...-..|+.|++..+.|+..|...+.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888888888888888876655
No 278
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=21.87 E-value=1.5e+02 Score=22.97 Aligned_cols=42 Identities=19% Similarity=0.359 Sum_probs=33.5
Q ss_pred HHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039268 175 HARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELT 216 (276)
Q Consensus 175 r~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEla 216 (276)
-+|.-|++-|..-.+++.+.+++.+|...=..|+-.|.-+|-
T Consensus 4 dLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 4 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 368889999999999999999999999988888888877763
No 279
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.74 E-value=3.3e+02 Score=22.25 Aligned_cols=119 Identities=25% Similarity=0.414 Sum_probs=60.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 61 LVEDRMAMQRELAAAKEELHRMNLVIGEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNG 140 (276)
Q Consensus 61 LaatHvaLrqeLaaaq~Elqrl~~~~~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~ 140 (276)
|.+.-+.|...++-++.+++.|-..+.++.-+. .++.+.-..+ .++..+|..-.+++.+| -+|..
T Consensus 4 l~~~~~~l~~KvAElekkv~~lek~lk~~~e~d---~e~y~ke~~~--------~~~qsele~k~aeLe~l----eeL~~ 68 (125)
T 2pms_C 4 MDAEEVAPQAKIAELENQVHRLEQELKEIDESE---SEDYAKEGFR--------APLQSKLDAKKAKLSKL----EELSD 68 (125)
T ss_dssp CHHHHHSHHHHHHHHHHHHHHHHHHTTTTCC-----------------------CHHHHHHHHHHHHHHHH----HHHHH
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhcchhh---hhHHHHHHHh--------HHHHHHHHHHHHHHHHH----HHHHh
Confidence 334456777888888888888877666554332 2222222111 12445666666666666 45666
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039268 141 KVQTLQKDLAKLQADNQQIPLLRAEIDGLHQELMHARAAVDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAELTNF 218 (276)
Q Consensus 141 qvq~l~~eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaElana 218 (276)
+|..+..+++.+..++..+-+. | +++- --..+.++.+..--.|++|..++|-.+
T Consensus 69 ki~eL~~kvA~le~e~~~~e~~--------------~---------~~~~-~~~e~le~~la~KkAEleKtqa~Ld~a 122 (125)
T 2pms_C 69 KIDELDAEIAKLEDQLKAAEEN--------------N---------NVED-YFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC---------------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--------------c---------cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555444332221 0 1111 113445566666666777777776543
No 280
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=21.59 E-value=1.3e+02 Score=23.49 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=27.9
Q ss_pred hhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Q 039268 106 KLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQADNQQIPLLR 163 (276)
Q Consensus 106 KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ad~qqipal~ 163 (276)
++++|=.+..-++ +..+++.+++......++++.+ ..+++..+...++..|.+.
T Consensus 34 ~l~~D~ea~~li~-~F~~~q~~~q~~q~~G~~~~~e---~~~~l~~l~~~l~~n~~v~ 87 (122)
T 2oeq_A 34 DVRRDETAYRMFA-NVRDIQLRLHEKQMRGAAILPD---EIEQAQKAMALAQQNEKLA 87 (122)
T ss_dssp HHHTCTTHHHHHH-HHHHHHHHHHHHHHTTCCCCHH---HHHHHHHHHHHHTTSHHHH
T ss_pred HHHCCHHHHHHHH-HHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHHhCCHHHH
Confidence 4444444444444 5666666666655555444432 3444555555555555553
No 281
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.50 E-value=3.6e+02 Score=22.61 Aligned_cols=88 Identities=14% Similarity=0.166 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 65 RMAMQRELAAAKEELHRMNLVI---GEIRAEQEVHVRDLVEKGLKLEADLRATEPLKKEAVQLRAEVQKLNNLRNELNGK 141 (276)
Q Consensus 65 HvaLrqeLaaaq~Elqrl~~~~---~~i~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RqeL~~q 141 (276)
+-.|.+.+.....-+..|...+ ..|..|--..++.|..+..+- .+. -.++.=...+..++.+++.....++..
T Consensus 20 ~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~-~~~---gs~~~~w~~~~~~~e~~a~~h~~~a~~ 95 (276)
T 2v0o_A 20 FDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNY-SQL---GTFAPVWDVFKTSTEKLANCHLDLVRK 95 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCC---SSSGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCc---chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444333 223333334555555554321 111 122222344455555666666666655
Q ss_pred HHHHHHHHHHHHhhh
Q 039268 142 VQTLQKDLAKLQADN 156 (276)
Q Consensus 142 vq~l~~eL~r~~ad~ 156 (276)
+..+-+.|.....+.
T Consensus 96 l~~~~~~l~~~~~~~ 110 (276)
T 2v0o_A 96 LQELIKEVQKYGEEQ 110 (276)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554444
No 282
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.46 E-value=2.2e+02 Score=20.17 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHh
Q 039268 165 EIDGLHQELMHARA 178 (276)
Q Consensus 165 Eie~lrqElqr~Ra 178 (276)
||-.|+.-+|.+..
T Consensus 57 Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 57 ESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 283
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.38 E-value=3.1e+02 Score=21.79 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=8.3
Q ss_pred hhhhHHhhhHHHHHH
Q 039268 179 AVDYEKKANIELMEQ 193 (276)
Q Consensus 179 a~EyEKk~~~e~~Eq 193 (276)
.|=|.|--.+|.+=|
T Consensus 42 DFYF~KLRdIEiLcQ 56 (106)
T 4e61_A 42 EFYFNKLRDIEILVH 56 (106)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 355566556665544
No 284
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=21.37 E-value=3.3e+02 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=16.8
Q ss_pred HHHHHhhhhhhhhhhhchhhHHHHHHHHHHHHH
Q 039268 98 RDLVEKGLKLEADLRATEPLKKEAVQLRAEVQK 130 (276)
Q Consensus 98 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 130 (276)
.+..+++.++..+|...+.++ +..++..+++.
T Consensus 69 ~e~~~el~~l~~~l~~np~V~-~y~~Ae~~l~~ 100 (151)
T 2pih_A 69 KQVEAKIDALQEELEEIPVIQ-EFRDSQMEVND 100 (151)
T ss_dssp HHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHH
Confidence 444455555555555555555 55555554444
No 285
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.69 E-value=5.9e+02 Score=24.81 Aligned_cols=35 Identities=6% Similarity=0.079 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039268 119 KEAVQLRAEVQKLNNLRNELNGKVQTLQKDLAKLQ 153 (276)
Q Consensus 119 ~El~q~raE~q~L~~~RqeL~~qvq~l~~eL~r~~ 153 (276)
.++..+-.+-+++...-++|.++...+++++.++.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666666666666655443
No 286
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=20.52 E-value=2.3e+02 Score=20.38 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.4
Q ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039268 180 VDYEKKANIELMEQRQAMEKNLVSMAREVEKLRAEL 215 (276)
Q Consensus 180 ~EyEKk~~~e~~Eq~qaMEknlisMarEvEKLRaEl 215 (276)
+.--|-.|..++++.+-+|..-.-|-.||+.|++=|
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL 48 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577788999999999999999999999998765
No 287
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=20.45 E-value=3.4e+02 Score=21.93 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHH
Q 039268 117 LKKEAVQLRAEVQKLN 132 (276)
Q Consensus 117 lk~El~q~raE~q~L~ 132 (276)
++.++..+..++.+|.
T Consensus 47 ~~~~i~~l~~~i~~~~ 62 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQ 62 (196)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
Done!