BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039269
         (439 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4
          Length = 1919

 Score = 36.2 bits (82), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 112/230 (48%), Gaps = 42/230 (18%)

Query: 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQF--------------------LTTKV 145
           LN++ +    +L   K D + L  R +++VA+                       + T+ 
Sbjct: 299 LNKLYDTAMDKLEVVKKDYDALRKRYSEKVAIHNADLSRLEQLGEENQRLLKQTEMLTQQ 358

Query: 146 KDLEVELETTSENCKENMQ--QAVLNEKERFTQ----MQWDMEELRKQLLE---TELKLK 196
           +D  ++L+     C  +++  +A+ +E  + T     +QW+ME L+ +L E   T++K  
Sbjct: 359 RDTAIQLQ---HQCALSLRRFEAIHHELNKATAQNKDLQWEMELLQSELTELRTTQVKTA 415

Query: 197 YEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE--ESEVKSKT-DVKLLVK 253
            E  E+ R E  + ++  E ++++ E + V  +L+ L  + E  ES++KS T + K   +
Sbjct: 416 KE-SEKYREE--RDAVYSEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAANE 472

Query: 254 EVKSLRSSQSEVKQELSRLMKE----KLEVEGVLQKEKQRMEHADIANLK 299
           E+++LR  +  V  +  R  KE    + + + + Q+ K+ ++ AD+A  +
Sbjct: 473 EMEALRQIKDTVTMDAGRANKEVEILRKQCKALCQELKEALQEADVAKCR 522


>sp|Q4QRL3|CC88B_MOUSE Coiled-coil domain-containing protein 88B OS=Mus musculus GN=Ccdc88b
            PE=1 SV=2
          Length = 1481

 Score = 33.5 bits (75), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 83/167 (49%), Gaps = 25/167 (14%)

Query: 162  NMQQAVLNEKERFTQMQWDME-ELRK---------------QLLETELKLKYEQ--DERA 203
              QQA+L + E   Q+Q   E EL                 +L   EL+ ++EQ   +RA
Sbjct: 1074 GQQQALLRDHEALVQLQRRQETELEGLLVRHRDLKANMRALELAHRELQGRHEQLQAQRA 1133

Query: 204  RAESSKMSIIQENEMLLQELEVVR---EQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260
              E+ +++++ E E L+Q+    R   E+L  L  +HE    +++  +  + +E   L+ 
Sbjct: 1134 NVEAQEVALLAERERLMQDGHRQRGLEEELRRLQNEHE----RAQMLLAEVSRERGELQG 1189

Query: 261  SQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEIL 307
             + E++  L+RL  E+ ++E   Q+ ++  +  D++  +L  +CE+L
Sbjct: 1190 ERGELRSRLARLELERAQLEIQSQQLRESNQQLDLSACRLTTQCELL 1236


>sp|P12753|RAD50_YEAST DNA repair protein RAD50 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=RAD50 PE=1 SV=1
          Length = 1312

 Score = 32.0 bits (71), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 22/150 (14%)

Query: 140 FLTTKVKDLEVELETTSE-----NCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELK 194
           +L  ++KDLE   +T SE     N  E+  Q V   +++  +M   + ELRK + +    
Sbjct: 801 YLEKELKDLENSSKTISEELSIYNTSEDGIQTVDELRDQQRKMNDSLRELRKTISD---- 856

Query: 195 LKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSK----TDVKL 250
           L+ E+DE+ R  S  +++I+E E+ + E+E    Q     KQ+ +  ++SK     D+  
Sbjct: 857 LQMEKDEKVRENSRMINLIKEKELTVSEIESSLTQ-----KQNIDDSIRSKRENINDIDS 911

Query: 251 LVKEVK----SLRSSQSEVKQELSRLMKEK 276
            VKE++    SL++ + E +  L ++  E+
Sbjct: 912 RVKELEARIISLKNKKDEAQSVLDKVKNER 941


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,848,541
Number of Sequences: 539616
Number of extensions: 5599441
Number of successful extensions: 35658
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 2761
Number of HSP's that attempted gapping in prelim test: 25876
Number of HSP's gapped (non-prelim): 8122
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)