Query 039269
Match_columns 439
No_of_seqs 30 out of 32
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02168 SMC_prok_B chromosom 97.8 0.013 2.9E-07 63.5 25.9 63 173-235 783-845 (1179)
2 TIGR02168 SMC_prok_B chromosom 97.5 0.077 1.7E-06 57.8 26.7 29 381-412 1019-1050(1179)
3 PF07888 CALCOCO1: Calcium bin 97.5 0.028 6.1E-07 60.7 22.9 128 174-314 327-457 (546)
4 TIGR02169 SMC_prok_A chromosom 97.4 0.099 2.2E-06 57.5 26.8 13 106-118 263-275 (1164)
5 COG1196 Smc Chromosome segrega 97.3 0.55 1.2E-05 54.1 30.9 16 7-22 565-580 (1163)
6 PF09755 DUF2046: Uncharacteri 97.2 0.15 3.2E-06 52.0 23.1 203 109-324 78-304 (310)
7 PRK02224 chromosome segregatio 96.8 0.87 1.9E-05 50.0 25.9 42 97-138 468-512 (880)
8 PF07888 CALCOCO1: Calcium bin 96.6 0.74 1.6E-05 50.1 23.6 58 105-162 168-239 (546)
9 COG1196 Smc Chromosome segrega 96.5 1.1 2.4E-05 51.7 25.4 56 171-226 778-833 (1163)
10 PF08317 Spc7: Spc7 kinetochor 96.5 0.17 3.7E-06 50.4 16.6 51 109-159 150-200 (325)
11 TIGR00606 rad50 rad50. This fa 96.3 0.86 1.9E-05 53.1 23.1 66 175-240 795-862 (1311)
12 PRK02224 chromosome segregatio 96.3 2.4 5.2E-05 46.6 29.0 13 99-111 148-160 (880)
13 PF04156 IncA: IncA protein; 96.1 0.26 5.7E-06 44.6 14.5 105 163-285 79-183 (191)
14 PF00261 Tropomyosin: Tropomyo 96.0 1.5 3.2E-05 42.0 21.2 121 113-233 13-160 (237)
15 PF09730 BicD: Microtubule-ass 96.0 0.67 1.5E-05 51.8 19.4 160 131-302 21-181 (717)
16 KOG0161 Myosin class II heavy 95.9 2.1 4.6E-05 52.6 24.5 138 101-248 978-1117(1930)
17 PF12128 DUF3584: Protein of u 95.8 2.2 4.9E-05 49.6 23.4 220 121-365 341-574 (1201)
18 PRK04778 septation ring format 95.7 2.2 4.8E-05 45.7 21.6 225 105-353 195-463 (569)
19 PF10174 Cast: RIM-binding pro 95.7 3.1 6.8E-05 47.1 23.5 150 110-259 254-423 (775)
20 PHA02562 46 endonuclease subun 95.7 2.9 6.3E-05 43.3 21.6 48 223-270 353-403 (562)
21 PRK04863 mukB cell division pr 95.7 4.5 9.7E-05 48.7 25.6 137 96-235 275-411 (1486)
22 PF15619 Lebercilin: Ciliary p 95.7 1.4 3E-05 41.9 17.7 148 105-283 33-187 (194)
23 PRK09039 hypothetical protein; 95.7 2.5 5.4E-05 43.0 20.7 166 139-316 42-208 (343)
24 PRK11637 AmiB activator; Provi 95.5 3.6 7.9E-05 42.2 22.8 13 106-118 52-64 (428)
25 KOG0161 Myosin class II heavy 95.4 6.3 0.00014 48.7 26.0 130 180-313 930-1059(1930)
26 KOG4674 Uncharacterized conser 95.4 4.6 0.0001 49.5 24.6 215 104-318 650-881 (1822)
27 KOG0612 Rho-associated, coiled 95.4 2.7 5.9E-05 49.7 22.0 178 130-310 502-736 (1317)
28 COG0419 SbcC ATPase involved i 95.3 6.6 0.00014 44.2 25.6 113 207-319 315-427 (908)
29 KOG0995 Centromere-associated 95.3 2.2 4.8E-05 46.8 19.7 130 184-314 264-393 (581)
30 KOG4674 Uncharacterized conser 95.2 11 0.00024 46.4 29.3 296 104-405 833-1185(1822)
31 TIGR00606 rad50 rad50. This fa 95.2 4.8 0.0001 47.2 23.4 64 250-313 899-962 (1311)
32 PF00261 Tropomyosin: Tropomyo 95.2 3.1 6.7E-05 39.8 21.1 26 108-133 36-61 (237)
33 PF00038 Filament: Intermediat 95.0 3.6 7.8E-05 39.8 24.1 33 129-161 110-142 (312)
34 PRK11637 AmiB activator; Provi 94.5 6.8 0.00015 40.3 24.4 16 268-283 234-249 (428)
35 KOG0963 Transcription factor/C 94.3 11 0.00024 42.0 22.8 127 175-309 192-358 (629)
36 KOG0971 Microtubule-associated 94.3 8.6 0.00019 44.9 21.6 54 120-190 223-276 (1243)
37 PF04849 HAP1_N: HAP1 N-termin 94.2 4.1 8.8E-05 41.8 17.4 179 127-317 80-291 (306)
38 PRK09039 hypothetical protein; 94.1 3.9 8.5E-05 41.6 17.2 75 190-275 113-187 (343)
39 PF10473 CENP-F_leu_zip: Leuci 94.1 3.7 8E-05 37.7 15.3 102 185-297 2-103 (140)
40 KOG0933 Structural maintenance 94.0 17 0.00036 42.9 24.7 214 99-331 672-902 (1174)
41 PF08317 Spc7: Spc7 kinetochor 93.7 3.9 8.5E-05 41.0 16.3 169 106-283 73-246 (325)
42 PF13851 GAS: Growth-arrest sp 93.6 1.1 2.4E-05 42.5 11.6 95 174-282 29-129 (201)
43 KOG1029 Endocytic adaptor prot 93.6 7.8 0.00017 44.6 19.6 68 164-231 429-496 (1118)
44 PRK10361 DNA recombination pro 93.5 7.5 0.00016 42.0 18.7 136 118-272 56-191 (475)
45 PF14197 Cep57_CLD_2: Centroso 93.3 0.79 1.7E-05 37.3 8.7 66 163-235 3-68 (69)
46 PF05701 WEMBL: Weak chloropla 93.3 14 0.0003 39.7 25.0 111 124-234 223-336 (522)
47 PF09789 DUF2353: Uncharacteri 93.1 7.1 0.00015 40.2 17.2 159 98-287 62-223 (319)
48 PF12128 DUF3584: Protein of u 93.1 22 0.00049 41.7 24.8 57 104-160 645-702 (1201)
49 TIGR03007 pepcterm_ChnLen poly 92.9 2.3 5.1E-05 43.8 13.6 85 184-272 252-350 (498)
50 TIGR01843 type_I_hlyD type I s 92.6 11 0.00025 37.0 17.8 72 249-320 206-278 (423)
51 COG1579 Zn-ribbon protein, pos 92.4 12 0.00026 37.1 17.1 154 146-311 34-187 (239)
52 KOG0996 Structural maintenance 92.0 33 0.00072 41.1 24.2 195 102-297 364-593 (1293)
53 PF02403 Seryl_tRNA_N: Seryl-t 92.0 4.3 9.3E-05 34.0 11.8 95 180-276 3-97 (108)
54 KOG0250 DNA repair protein RAD 91.9 18 0.0004 42.6 20.1 61 215-279 373-434 (1074)
55 COG1579 Zn-ribbon protein, pos 91.9 13 0.00027 37.0 16.5 120 141-275 57-178 (239)
56 COG0419 SbcC ATPase involved i 91.8 27 0.00059 39.5 29.8 262 109-395 587-868 (908)
57 smart00787 Spc7 Spc7 kinetocho 91.7 10 0.00022 38.6 16.1 194 106-315 68-266 (312)
58 PRK04778 septation ring format 91.7 22 0.00048 38.3 23.5 47 120-166 287-333 (569)
59 PLN02939 transferase, transfer 91.4 3.3 7.1E-05 48.0 13.6 144 95-271 258-401 (977)
60 PF10473 CENP-F_leu_zip: Leuci 91.3 7.7 0.00017 35.7 13.5 87 136-240 17-106 (140)
61 COG4372 Uncharacterized protei 90.6 7.5 0.00016 41.7 14.4 68 218-289 134-205 (499)
62 KOG0980 Actin-binding protein 90.5 41 0.00089 39.3 26.3 159 107-279 350-541 (980)
63 TIGR03185 DNA_S_dndD DNA sulfu 90.4 30 0.00066 37.7 20.2 98 213-311 229-336 (650)
64 PF09726 Macoilin: Transmembra 90.3 36 0.00078 38.4 28.9 209 100-319 417-660 (697)
65 KOG4643 Uncharacterized coiled 90.1 44 0.00095 39.7 20.7 228 108-416 383-629 (1195)
66 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.1 13 0.00028 32.9 15.4 120 191-313 8-130 (132)
67 PRK03918 chromosome segregatio 89.6 37 0.0008 37.5 29.6 22 375-396 819-840 (880)
68 PF13870 DUF4201: Domain of un 89.5 13 0.00029 33.8 13.5 114 140-268 53-167 (177)
69 PF00435 Spectrin: Spectrin re 89.2 8.4 0.00018 29.5 10.9 97 174-272 3-99 (105)
70 KOG0250 DNA repair protein RAD 89.1 30 0.00066 40.9 18.7 104 174-277 360-467 (1074)
71 KOG0933 Structural maintenance 89.1 56 0.0012 38.8 22.0 164 113-276 713-894 (1174)
72 KOG0977 Nuclear envelope prote 89.0 35 0.00076 37.7 18.3 89 213-308 126-217 (546)
73 KOG0964 Structural maintenance 89.0 57 0.0012 38.8 21.2 104 113-231 242-345 (1200)
74 smart00787 Spc7 Spc7 kinetocho 89.0 24 0.00052 36.0 16.1 43 112-154 148-190 (312)
75 PF10186 Atg14: UV radiation r 88.7 22 0.00047 33.6 16.3 41 92-136 8-48 (302)
76 TIGR03017 EpsF chain length de 88.6 30 0.00065 35.1 19.7 29 306-334 360-388 (444)
77 KOG0977 Nuclear envelope prote 88.6 41 0.00089 37.2 18.5 198 114-312 133-366 (546)
78 PF07926 TPR_MLP1_2: TPR/MLP1/ 88.5 17 0.00037 32.1 14.8 120 143-270 3-122 (132)
79 PF15070 GOLGA2L5: Putative go 88.4 37 0.0008 37.8 18.2 135 100-260 159-293 (617)
80 PF04111 APG6: Autophagy prote 88.4 7.8 0.00017 39.1 12.2 138 176-326 13-150 (314)
81 PF05667 DUF812: Protein of un 88.3 16 0.00034 40.4 15.3 99 177-275 333-448 (594)
82 COG4942 Membrane-bound metallo 88.0 36 0.00078 36.6 17.2 81 172-252 38-118 (420)
83 PRK01156 chromosome segregatio 88.0 50 0.0011 37.0 28.4 20 374-393 831-850 (895)
84 PRK10884 SH3 domain-containing 87.9 6.4 0.00014 37.9 10.8 76 212-287 91-166 (206)
85 PHA02562 46 endonuclease subun 87.7 38 0.00083 35.3 23.6 14 143-156 213-226 (562)
86 PF12718 Tropomyosin_1: Tropom 87.3 22 0.00049 32.2 14.7 33 211-243 77-109 (143)
87 KOG1899 LAR transmembrane tyro 87.2 16 0.00035 41.4 14.5 59 111-169 107-168 (861)
88 PF13514 AAA_27: AAA domain 86.6 59 0.0013 37.8 19.2 67 213-279 853-922 (1111)
89 PF14662 CCDC155: Coiled-coil 86.5 34 0.00073 33.4 15.7 123 183-313 5-127 (193)
90 PF00038 Filament: Intermediat 86.4 33 0.00072 33.3 21.8 38 121-158 3-40 (312)
91 KOG4673 Transcription factor T 86.4 70 0.0015 36.9 19.9 87 222-314 531-624 (961)
92 KOG0249 LAR-interacting protei 86.3 30 0.00066 39.7 16.1 175 91-290 53-257 (916)
93 TIGR01843 type_I_hlyD type I s 86.0 37 0.00081 33.5 18.5 8 430-437 402-409 (423)
94 PRK09841 cryptic autophosphory 85.9 44 0.00096 37.1 17.2 136 181-331 276-413 (726)
95 PF10168 Nup88: Nuclear pore c 85.8 35 0.00076 38.5 16.4 54 103-156 538-592 (717)
96 KOG0612 Rho-associated, coiled 85.6 94 0.002 37.7 26.1 57 111-176 451-512 (1317)
97 cd09238 V_Alix_like_1 Protein- 85.2 46 0.00099 33.8 19.4 190 104-300 75-277 (339)
98 KOG0978 E3 ubiquitin ligase in 85.2 75 0.0016 36.2 24.3 196 98-313 386-619 (698)
99 KOG0964 Structural maintenance 84.8 49 0.0011 39.3 17.1 147 130-281 666-813 (1200)
100 PF09726 Macoilin: Transmembra 84.7 76 0.0017 35.9 21.3 66 119-198 411-479 (697)
101 KOG0979 Structural maintenance 83.6 88 0.0019 37.2 18.6 174 118-311 123-327 (1072)
102 KOG0976 Rho/Rac1-interacting s 83.5 87 0.0019 36.9 18.2 162 144-313 292-470 (1265)
103 TIGR01005 eps_transp_fam exopo 83.5 76 0.0017 35.0 19.4 54 98-156 161-214 (754)
104 PF06160 EzrA: Septation ring 83.5 72 0.0016 34.6 24.8 231 103-411 258-496 (560)
105 PF05622 HOOK: HOOK protein; 83.3 0.36 7.8E-06 52.8 0.0 95 218-313 329-423 (713)
106 PF09738 DUF2051: Double stran 83.2 24 0.00053 36.0 12.8 14 298-311 150-163 (302)
107 PF03915 AIP3: Actin interacti 83.1 16 0.00035 38.9 11.9 243 142-402 150-409 (424)
108 PF13801 Metal_resist: Heavy-m 83.0 4.6 9.9E-05 32.4 6.3 86 94-179 38-123 (125)
109 KOG0976 Rho/Rac1-interacting s 83.0 1.1E+02 0.0023 36.2 21.5 78 234-316 265-349 (1265)
110 PF15066 CAGE1: Cancer-associa 82.7 82 0.0018 34.7 20.9 129 99-246 308-444 (527)
111 PRK11519 tyrosine kinase; Prov 82.6 82 0.0018 35.0 17.5 136 181-331 276-413 (719)
112 PF10186 Atg14: UV radiation r 82.1 46 0.001 31.4 14.8 59 294-353 143-203 (302)
113 PRK10884 SH3 domain-containing 81.6 7.1 0.00015 37.6 8.0 21 143-163 93-113 (206)
114 PF05557 MAD: Mitotic checkpoi 81.5 1.2 2.5E-05 48.9 3.0 124 181-315 300-426 (722)
115 TIGR01005 eps_transp_fam exopo 81.4 92 0.002 34.4 17.8 62 180-241 202-264 (754)
116 TIGR03185 DNA_S_dndD DNA sulfu 80.3 17 0.00036 39.6 11.1 65 213-277 222-286 (650)
117 PF09789 DUF2353: Uncharacteri 80.2 77 0.0017 32.9 15.2 109 159-273 66-181 (319)
118 PLN02320 seryl-tRNA synthetase 80.2 15 0.00033 39.8 10.7 88 180-271 68-155 (502)
119 PF04156 IncA: IncA protein; 79.4 49 0.0011 30.1 14.8 22 252-273 129-150 (191)
120 PF09755 DUF2046: Uncharacteri 78.7 88 0.0019 32.5 23.6 154 140-313 45-203 (310)
121 KOG1029 Endocytic adaptor prot 78.6 1.4E+02 0.0031 35.0 20.2 134 143-282 378-515 (1118)
122 KOG0999 Microtubule-associated 78.2 1.3E+02 0.0028 34.2 23.8 248 100-363 42-329 (772)
123 PF05557 MAD: Mitotic checkpoi 78.1 23 0.00051 39.1 11.5 146 94-242 406-587 (722)
124 PF10146 zf-C4H2: Zinc finger- 77.9 45 0.00097 32.9 12.2 18 181-198 3-20 (230)
125 KOG0239 Kinesin (KAR3 subfamil 77.3 55 0.0012 36.8 14.1 42 348-389 375-429 (670)
126 COG2433 Uncharacterized conser 76.6 26 0.00056 39.4 11.2 136 134-291 348-512 (652)
127 TIGR03017 EpsF chain length de 76.6 92 0.002 31.7 20.8 23 135-157 170-192 (444)
128 smart00806 AIP3 Actin interact 76.6 38 0.00082 36.5 12.1 240 143-402 155-411 (426)
129 PF12718 Tropomyosin_1: Tropom 76.4 60 0.0013 29.5 15.8 104 174-285 2-105 (143)
130 PF07111 HCR: Alpha helical co 76.3 1.5E+02 0.0033 34.1 20.1 130 101-241 91-231 (739)
131 PF05266 DUF724: Protein of un 76.2 48 0.001 31.7 11.6 114 103-239 68-184 (190)
132 cd09236 V_AnPalA_UmRIM20_like 76.1 96 0.0021 31.6 19.4 182 105-300 75-291 (353)
133 PF09787 Golgin_A5: Golgin sub 75.7 1.2E+02 0.0026 32.6 25.8 71 213-283 213-297 (511)
134 PF04111 APG6: Autophagy prote 75.6 22 0.00048 36.0 9.7 17 218-234 20-36 (314)
135 PF03962 Mnd1: Mnd1 family; I 75.1 23 0.00049 33.5 9.1 53 215-272 77-129 (188)
136 COG4942 Membrane-bound metallo 75.1 1.3E+02 0.0028 32.6 22.3 75 113-202 36-110 (420)
137 PRK10929 putative mechanosensi 74.5 86 0.0019 37.4 15.3 89 261-363 103-191 (1109)
138 PRK01156 chromosome segregatio 74.3 1.6E+02 0.0034 33.2 24.3 61 99-161 148-208 (895)
139 PRK05431 seryl-tRNA synthetase 73.2 35 0.00076 35.8 10.8 87 180-269 3-89 (425)
140 KOG2751 Beclin-like protein [S 73.0 83 0.0018 34.2 13.5 86 213-304 149-234 (447)
141 KOG4572 Predicted DNA-binding 72.7 30 0.00066 40.4 10.7 106 181-290 924-1039(1424)
142 PF07106 TBPIP: Tat binding pr 72.1 17 0.00037 32.9 7.3 65 243-312 69-133 (169)
143 PF05483 SCP-1: Synaptonemal c 72.1 1.4E+02 0.003 34.5 15.4 127 182-308 555-681 (786)
144 PF10211 Ax_dynein_light: Axon 71.8 26 0.00057 33.0 8.7 143 102-271 31-188 (189)
145 PF06785 UPF0242: Uncharacteri 71.6 1.5E+02 0.0032 31.8 14.9 125 135-275 67-191 (401)
146 PF14197 Cep57_CLD_2: Centroso 71.5 27 0.00059 28.5 7.6 60 183-242 9-68 (69)
147 TIGR02680 conserved hypothetic 70.6 2.5E+02 0.0054 34.0 23.4 155 130-284 794-959 (1353)
148 TIGR00414 serS seryl-tRNA synt 70.6 51 0.0011 34.6 11.2 85 180-265 3-88 (418)
149 PF04012 PspA_IM30: PspA/IM30 70.3 95 0.0021 29.0 13.6 74 106-197 3-76 (221)
150 PF07106 TBPIP: Tat binding pr 69.4 28 0.0006 31.5 8.1 53 183-235 83-137 (169)
151 KOG0994 Extracellular matrix g 69.1 76 0.0017 38.6 13.1 116 165-287 1412-1538(1758)
152 COG1340 Uncharacterized archae 69.0 1.5E+02 0.0032 30.7 18.0 116 173-300 159-274 (294)
153 PRK10246 exonuclease subunit S 68.8 2.4E+02 0.0052 33.1 18.9 95 181-283 779-886 (1047)
154 PRK15422 septal ring assembly 68.6 40 0.00086 28.9 8.1 67 161-238 11-77 (79)
155 KOG2911 Uncharacterized conser 67.7 43 0.00093 36.2 10.1 171 210-412 229-405 (439)
156 TIGR03007 pepcterm_ChnLen poly 67.3 1.6E+02 0.0035 30.6 20.2 24 136-159 161-184 (498)
157 PF03962 Mnd1: Mnd1 family; I 67.2 84 0.0018 29.7 11.0 60 173-240 70-129 (188)
158 PF15070 GOLGA2L5: Putative go 67.0 2.2E+02 0.0048 32.0 21.7 35 255-289 162-196 (617)
159 PLN02678 seryl-tRNA synthetase 66.7 58 0.0013 34.9 10.9 59 209-268 35-93 (448)
160 PF05911 DUF869: Plant protein 66.6 2.5E+02 0.0054 32.5 21.3 181 124-313 511-712 (769)
161 PF07445 priB_priC: Primosomal 66.6 39 0.00085 31.5 8.6 91 101-198 77-171 (173)
162 PF04849 HAP1_N: HAP1 N-termin 66.5 1.7E+02 0.0036 30.4 15.7 37 249-285 258-294 (306)
163 KOG0996 Structural maintenance 66.1 3.2E+02 0.0069 33.5 23.8 33 209-241 435-467 (1293)
164 PF05529 Bap31: B-cell recepto 66.1 48 0.001 30.6 9.0 26 213-238 167-192 (192)
165 PRK09343 prefoldin subunit bet 66.0 94 0.002 27.4 10.4 41 231-275 74-114 (121)
166 PF05384 DegS: Sensor protein 65.9 1.2E+02 0.0026 28.5 13.7 82 192-273 5-87 (159)
167 KOG0163 Myosin class VI heavy 65.4 1E+02 0.0023 36.1 12.9 36 122-160 850-885 (1259)
168 PF01576 Myosin_tail_1: Myosin 65.2 2.1 4.5E-05 48.5 0.0 22 136-157 321-342 (859)
169 PF10168 Nup88: Nuclear pore c 65.2 1.7E+02 0.0036 33.3 14.5 6 161-166 539-544 (717)
170 PF10205 KLRAQ: Predicted coil 64.6 48 0.0011 29.4 8.2 65 161-246 15-79 (102)
171 smart00502 BBC B-Box C-termina 64.2 77 0.0017 25.8 10.5 47 258-313 77-123 (127)
172 KOG0971 Microtubule-associated 63.7 3.3E+02 0.0071 32.8 22.8 86 159-244 326-433 (1243)
173 TIGR02977 phageshock_pspA phag 63.4 1.4E+02 0.003 28.4 17.7 166 106-272 29-213 (219)
174 PRK09841 cryptic autophosphory 63.3 2.5E+02 0.0055 31.4 18.9 57 95-156 231-287 (726)
175 KOG0239 Kinesin (KAR3 subfamil 63.0 2.5E+02 0.0055 31.8 15.3 27 181-207 191-217 (670)
176 PRK10698 phage shock protein P 62.6 1.5E+02 0.0033 28.6 18.4 162 109-272 32-213 (222)
177 PF14662 CCDC155: Coiled-coil 62.2 1.6E+02 0.0036 28.8 18.0 92 180-272 68-159 (193)
178 PF09730 BicD: Microtubule-ass 62.0 3E+02 0.0064 31.7 23.2 111 207-317 359-469 (717)
179 PF10146 zf-C4H2: Zinc finger- 61.5 1.7E+02 0.0037 28.9 12.5 63 251-313 37-99 (230)
180 PF08826 DMPK_coil: DMPK coile 61.3 50 0.0011 26.7 7.1 48 213-264 10-57 (61)
181 PF09304 Cortex-I_coil: Cortex 61.2 1.3E+02 0.0027 27.2 12.3 59 185-243 8-66 (107)
182 COG3074 Uncharacterized protei 60.9 73 0.0016 27.2 8.2 68 158-236 8-75 (79)
183 PF13851 GAS: Growth-arrest sp 60.9 1.6E+02 0.0034 28.2 16.3 25 106-130 32-56 (201)
184 cd00176 SPEC Spectrin repeats, 59.8 1.1E+02 0.0024 26.2 14.1 91 176-268 4-94 (213)
185 TIGR02680 conserved hypothetic 59.7 3.9E+02 0.0085 32.4 24.4 108 182-289 847-957 (1353)
186 PF12325 TMF_TATA_bd: TATA ele 59.5 1.1E+02 0.0023 27.6 9.6 25 249-273 64-88 (120)
187 TIGR01069 mutS2 MutS2 family p 59.4 1.1E+02 0.0023 34.9 11.8 12 398-409 735-746 (771)
188 PF01576 Myosin_tail_1: Myosin 59.3 3.1 6.7E-05 47.1 0.0 208 108-316 145-370 (859)
189 cd09235 V_Alix Middle V-domain 59.1 2.1E+02 0.0045 29.1 21.7 122 105-237 73-214 (339)
190 KOG0994 Extracellular matrix g 59.0 4.4E+02 0.0095 32.7 22.8 126 160-285 1544-1679(1758)
191 PF11932 DUF3450: Protein of u 59.0 1.8E+02 0.0038 28.1 12.2 31 209-239 44-74 (251)
192 PF11559 ADIP: Afadin- and alp 57.8 1.4E+02 0.003 26.6 13.8 94 125-236 55-148 (151)
193 COG2433 Uncharacterized conser 57.8 1.4E+02 0.0031 33.8 12.1 84 184-282 427-510 (652)
194 PF15619 Lebercilin: Ciliary p 57.4 1.8E+02 0.004 27.9 18.4 130 184-313 38-189 (194)
195 PF15188 CCDC-167: Coiled-coil 57.2 47 0.001 28.6 6.7 63 211-274 2-64 (85)
196 PF05622 HOOK: HOOK protein; 56.8 3.6 7.8E-05 45.2 0.0 103 141-262 237-341 (713)
197 KOG0980 Actin-binding protein 56.7 4.1E+02 0.0089 31.7 18.5 31 209-239 433-463 (980)
198 PF03915 AIP3: Actin interacti 56.7 1.3E+02 0.0027 32.4 11.2 95 138-235 215-313 (424)
199 PF10498 IFT57: Intra-flagella 56.2 2.6E+02 0.0057 29.3 14.1 156 97-271 191-346 (359)
200 TIGR03545 conserved hypothetic 56.1 65 0.0014 35.4 9.2 76 160-238 166-243 (555)
201 KOG3478 Prefoldin subunit 6, K 56.0 1.7E+02 0.0036 26.9 10.6 92 177-272 3-102 (120)
202 PF09304 Cortex-I_coil: Cortex 55.9 1.4E+02 0.003 26.9 9.6 64 202-283 4-67 (107)
203 TIGR01069 mutS2 MutS2 family p 55.6 2.9E+02 0.0062 31.6 14.3 29 108-136 497-525 (771)
204 TIGR01010 BexC_CtrB_KpsE polys 55.2 2.3E+02 0.0051 28.4 15.4 82 180-265 178-261 (362)
205 PF11559 ADIP: Afadin- and alp 55.0 1.5E+02 0.0033 26.3 14.6 148 128-313 4-151 (151)
206 TIGR03545 conserved hypothetic 54.8 74 0.0016 35.0 9.4 25 244-268 217-241 (555)
207 PF09325 Vps5: Vps5 C terminal 54.4 1.8E+02 0.0039 26.8 13.3 56 188-243 137-192 (236)
208 PF15233 SYCE1: Synaptonemal c 54.1 1.9E+02 0.0041 27.0 13.5 37 227-265 95-131 (134)
209 PRK11519 tyrosine kinase; Prov 54.0 3.6E+02 0.0077 30.2 18.1 59 94-158 230-289 (719)
210 KOG0804 Cytoplasmic Zn-finger 53.5 3.5E+02 0.0076 29.9 14.3 47 213-273 402-448 (493)
211 PF06160 EzrA: Septation ring 53.5 3.3E+02 0.0072 29.7 22.3 153 105-269 98-268 (560)
212 KOG4302 Microtubule-associated 53.4 2.8E+02 0.0061 31.7 13.6 104 209-335 56-159 (660)
213 PF03148 Tektin: Tektin family 53.1 2.9E+02 0.0062 28.8 18.8 33 249-281 320-352 (384)
214 PF15397 DUF4618: Domain of un 52.9 2.7E+02 0.0057 28.4 21.0 152 181-361 65-223 (258)
215 cd07686 F-BAR_Fer The F-BAR (F 52.7 2.2E+02 0.0048 28.2 11.5 123 214-361 65-195 (234)
216 PF14915 CCDC144C: CCDC144C pr 52.6 3E+02 0.0064 28.8 21.9 130 182-314 147-297 (305)
217 PF13949 ALIX_LYPXL_bnd: ALIX 52.5 2.2E+02 0.0048 27.3 17.3 66 104-169 25-99 (296)
218 PF14988 DUF4515: Domain of un 52.4 2.3E+02 0.0049 27.4 16.7 137 101-243 36-192 (206)
219 KOG0240 Kinesin (SMY1 subfamil 52.0 3.4E+02 0.0073 30.8 13.7 14 306-319 539-552 (607)
220 TIGR01010 BexC_CtrB_KpsE polys 51.8 2.6E+02 0.0057 28.0 13.7 37 125-161 157-195 (362)
221 PRK06800 fliH flagellar assemb 51.6 66 0.0014 31.9 7.5 61 233-297 36-96 (228)
222 PF12761 End3: Actin cytoskele 51.6 2.2E+02 0.0049 27.9 11.1 86 177-269 94-183 (195)
223 PF08614 ATG16: Autophagy prot 51.5 43 0.00093 31.2 6.1 15 184-198 128-142 (194)
224 PF06156 DUF972: Protein of un 51.3 85 0.0018 27.7 7.5 53 183-235 5-57 (107)
225 KOG0243 Kinesin-like protein [ 50.9 4.5E+02 0.0099 31.7 15.1 124 120-243 370-512 (1041)
226 PF14775 NYD-SP28_assoc: Sperm 50.8 17 0.00036 29.0 2.9 29 245-273 32-60 (60)
227 KOG0993 Rab5 GTPase effector R 50.8 3.8E+02 0.0083 29.6 14.7 52 252-313 401-452 (542)
228 PRK00409 recombination and DNA 50.8 2.5E+02 0.0055 32.1 12.9 12 388-399 719-730 (782)
229 PF07321 YscO: Type III secret 50.4 2.2E+02 0.0047 26.6 14.4 98 161-265 14-111 (152)
230 PF00769 ERM: Ezrin/radixin/mo 50.3 2.6E+02 0.0056 27.5 14.8 15 393-407 181-195 (246)
231 PF05262 Borrelia_P83: Borreli 50.0 3.9E+02 0.0085 29.4 17.7 38 89-127 149-203 (489)
232 PF15035 Rootletin: Ciliary ro 49.9 2.4E+02 0.0051 26.9 13.3 92 180-271 61-166 (182)
233 PF03961 DUF342: Protein of un 49.8 1.3E+02 0.0028 31.5 9.9 25 11-35 143-170 (451)
234 PRK00409 recombination and DNA 49.6 2.4E+02 0.0051 32.3 12.5 15 383-397 719-733 (782)
235 COG5283 Phage-related tail pro 49.6 3.4E+02 0.0073 33.2 13.9 135 177-317 76-220 (1213)
236 PF05667 DUF812: Protein of un 49.4 4.2E+02 0.0092 29.7 25.2 209 103-314 330-569 (594)
237 PF14282 FlxA: FlxA-like prote 48.6 1.2E+02 0.0025 26.3 7.9 57 221-277 19-75 (106)
238 PLN02939 transferase, transfer 47.9 3.8E+02 0.0082 32.0 13.9 87 227-324 200-286 (977)
239 PF06632 XRCC4: DNA double-str 47.7 1.6E+02 0.0034 30.8 10.0 44 213-256 150-193 (342)
240 PF15066 CAGE1: Cancer-associa 47.7 3.5E+02 0.0076 30.1 12.8 37 120-156 367-403 (527)
241 PF10805 DUF2730: Protein of u 47.7 1.1E+02 0.0024 26.5 7.6 65 171-235 34-100 (106)
242 COG3883 Uncharacterized protei 47.5 98 0.0021 31.5 8.3 48 211-258 63-110 (265)
243 smart00806 AIP3 Actin interact 47.3 4E+02 0.0086 29.1 13.1 101 139-242 220-324 (426)
244 KOG0963 Transcription factor/C 47.0 4.9E+02 0.011 29.7 17.9 48 225-272 296-343 (629)
245 PF05010 TACC: Transforming ac 46.8 2.9E+02 0.0063 27.0 18.9 56 227-282 142-197 (207)
246 PF15290 Syntaphilin: Golgi-lo 46.6 2.3E+02 0.005 29.6 10.7 78 184-277 73-155 (305)
247 PRK04863 mukB cell division pr 46.5 6.8E+02 0.015 31.2 24.0 40 116-155 349-388 (1486)
248 PF08580 KAR9: Yeast cortical 46.1 5E+02 0.011 29.6 20.1 54 141-194 96-152 (683)
249 PF10267 Tmemb_cc2: Predicted 45.8 4.1E+02 0.0089 28.5 18.3 74 105-203 216-300 (395)
250 PF05615 THOC7: Tho complex su 45.8 1.4E+02 0.003 26.3 8.1 39 194-232 75-113 (139)
251 PF04880 NUDE_C: NUDE protein, 45.0 26 0.00057 33.1 3.7 21 254-276 32-52 (166)
252 PRK11546 zraP zinc resistance 44.9 1.1E+02 0.0024 28.5 7.6 50 222-271 62-114 (143)
253 PF10234 Cluap1: Clusterin-ass 44.9 3.6E+02 0.0077 27.5 12.1 69 191-259 174-249 (267)
254 PF05529 Bap31: B-cell recepto 44.6 1.4E+02 0.003 27.6 8.3 11 98-108 26-36 (192)
255 PF05615 THOC7: Tho complex su 44.1 2.2E+02 0.0049 25.0 9.6 78 177-259 51-128 (139)
256 COG5185 HEC1 Protein involved 43.9 5.2E+02 0.011 29.1 18.9 128 181-310 297-425 (622)
257 PF14182 YgaB: YgaB-like prote 43.4 72 0.0016 27.4 5.6 49 176-233 18-66 (79)
258 PF11598 COMP: Cartilage oligo 43.3 81 0.0017 24.3 5.4 17 300-316 27-43 (45)
259 PF04380 BMFP: Membrane fusoge 43.2 39 0.00084 27.9 4.0 31 213-243 49-79 (79)
260 PF00769 ERM: Ezrin/radixin/mo 43.1 3.4E+02 0.0073 26.7 13.6 22 285-306 96-117 (246)
261 PF06034 DUF919: Nucleopolyhed 43.1 52 0.0011 26.9 4.6 53 262-319 3-55 (62)
262 PF04012 PspA_IM30: PspA/IM30 41.6 3E+02 0.0065 25.7 19.0 141 208-361 45-188 (221)
263 PF08926 DUF1908: Domain of un 41.6 2.6E+02 0.0056 29.0 10.2 102 186-319 132-239 (282)
264 KOG4005 Transcription factor X 41.1 1.4E+02 0.0029 30.7 8.1 32 202-233 113-144 (292)
265 TIGR00634 recN DNA repair prot 41.1 5E+02 0.011 28.1 18.5 42 246-287 329-373 (563)
266 KOG0978 E3 ubiquitin ligase in 41.0 6.3E+02 0.014 29.2 21.5 182 111-312 453-645 (698)
267 PF07889 DUF1664: Protein of u 40.9 2.9E+02 0.0062 25.3 10.8 72 124-199 52-123 (126)
268 COG3883 Uncharacterized protei 40.6 4.2E+02 0.0091 27.1 17.1 53 227-283 147-199 (265)
269 PF06005 DUF904: Protein of un 40.1 1.6E+02 0.0034 24.4 7.1 58 163-238 13-70 (72)
270 PF04977 DivIC: Septum formati 40.1 1.2E+02 0.0027 23.4 6.3 14 219-232 22-35 (80)
271 COG4026 Uncharacterized protei 39.8 1.1E+02 0.0025 31.1 7.3 29 213-241 148-176 (290)
272 PF15134 DUF4570: Domain of un 39.6 85 0.0018 28.3 5.8 44 188-231 26-69 (109)
273 PRK11546 zraP zinc resistance 39.6 1.3E+02 0.0028 28.1 7.2 53 176-228 58-110 (143)
274 PF07197 DUF1409: Protein of u 39.5 10 0.00022 30.0 0.1 29 296-324 6-34 (51)
275 KOG4403 Cell surface glycoprot 39.2 5.9E+02 0.013 28.4 13.8 127 104-240 242-380 (575)
276 cd08915 V_Alix_like Protein-in 39.1 4.1E+02 0.009 26.6 20.6 86 212-300 191-280 (342)
277 PRK13169 DNA replication intia 37.8 2.4E+02 0.0053 25.2 8.4 53 183-235 5-57 (110)
278 PF03310 Cauli_DNA-bind: Cauli 37.8 1.2E+02 0.0026 27.9 6.5 55 251-315 4-58 (121)
279 KOG4657 Uncharacterized conser 37.4 4.1E+02 0.0089 27.1 10.6 61 217-278 65-125 (246)
280 COG4026 Uncharacterized protei 36.7 1.2E+02 0.0026 30.9 6.9 56 209-268 151-206 (290)
281 KOG1962 B-cell receptor-associ 36.6 1.4E+02 0.003 29.7 7.2 23 255-277 181-203 (216)
282 PF11802 CENP-K: Centromere-as 36.6 83 0.0018 32.1 5.9 87 292-392 13-101 (268)
283 PF13942 Lipoprotein_20: YfhG 36.2 1.4E+02 0.0029 29.1 6.9 52 159-234 106-157 (179)
284 KOG4807 F-actin binding protei 36.0 4.1E+02 0.009 29.3 11.1 101 152-259 387-487 (593)
285 cd00632 Prefoldin_beta Prefold 35.9 2.7E+02 0.0058 23.5 9.6 33 239-271 63-95 (105)
286 PF10212 TTKRSYEDQ: Predicted 35.9 4.5E+02 0.0098 29.4 11.6 57 180-236 421-477 (518)
287 smart00503 SynN Syntaxin N-ter 35.4 2.5E+02 0.0054 23.0 10.9 16 260-275 89-104 (117)
288 KOG3003 Molecular chaperone of 35.1 1.3E+02 0.0028 30.3 6.9 109 270-411 67-175 (236)
289 PRK10246 exonuclease subunit S 35.0 8.2E+02 0.018 28.9 21.4 26 249-274 293-318 (1047)
290 PF09032 Siah-Interact_N: Siah 34.9 54 0.0012 27.8 3.7 45 113-157 1-47 (79)
291 PF08826 DMPK_coil: DMPK coile 34.9 2.4E+02 0.0051 22.9 7.1 36 199-234 24-59 (61)
292 PF03357 Snf7: Snf7; InterPro 34.8 2E+02 0.0043 25.1 7.4 52 345-396 104-157 (171)
293 PF13094 CENP-Q: CENP-Q, a CEN 34.7 1.1E+02 0.0023 27.7 5.8 41 209-249 22-62 (160)
294 PF11802 CENP-K: Centromere-as 34.7 5E+02 0.011 26.7 11.0 126 101-259 23-163 (268)
295 PF10046 BLOC1_2: Biogenesis o 34.6 2.9E+02 0.0063 23.5 10.8 89 106-196 5-97 (99)
296 KOG4360 Uncharacterized coiled 34.2 7.4E+02 0.016 28.1 13.8 91 217-318 201-291 (596)
297 PRK02793 phi X174 lysis protei 34.2 2.4E+02 0.0052 23.1 7.2 68 341-429 4-71 (72)
298 PRK05431 seryl-tRNA synthetase 34.1 1.8E+02 0.0039 30.7 8.1 12 246-257 49-60 (425)
299 PF07246 Phlebovirus_NSM: Phle 33.8 3.1E+02 0.0068 28.1 9.4 41 213-255 167-207 (264)
300 PF10805 DUF2730: Protein of u 33.6 3.1E+02 0.0068 23.7 8.2 68 110-198 24-91 (106)
301 PTZ00464 SNF-7-like protein; P 33.5 4.6E+02 0.01 25.6 10.4 21 173-193 79-99 (211)
302 PRK10698 phage shock protein P 33.2 4.6E+02 0.01 25.4 16.5 149 184-357 29-185 (222)
303 PF08614 ATG16: Autophagy prot 33.2 4.1E+02 0.0089 24.8 11.1 83 143-240 74-156 (194)
304 PF12329 TMF_DNA_bd: TATA elem 33.0 2E+02 0.0044 23.6 6.6 26 173-198 13-38 (74)
305 PLN02678 seryl-tRNA synthetase 32.8 1.9E+02 0.0041 31.2 8.1 13 246-258 54-66 (448)
306 PF05008 V-SNARE: Vesicle tran 32.8 1.9E+02 0.004 22.9 6.3 55 171-231 24-78 (79)
307 PF10174 Cast: RIM-binding pro 32.8 8.5E+02 0.018 28.4 28.8 123 248-409 467-598 (775)
308 PF05700 BCAS2: Breast carcino 32.7 3.4E+02 0.0073 26.1 9.1 84 209-292 138-221 (221)
309 KOG0244 Kinesin-like protein [ 32.6 4E+02 0.0087 31.6 11.0 57 196-252 505-572 (913)
310 KOG0995 Centromere-associated 32.6 7.9E+02 0.017 27.9 19.1 69 192-260 438-506 (581)
311 cd00176 SPEC Spectrin repeats, 32.5 3.2E+02 0.007 23.4 16.9 104 137-247 73-179 (213)
312 KOG2129 Uncharacterized conser 32.1 7.5E+02 0.016 27.5 22.5 153 162-328 147-342 (552)
313 PF07795 DUF1635: Protein of u 32.1 1.6E+02 0.0035 29.2 6.9 51 180-240 2-52 (214)
314 PF04129 Vps52: Vps52 / Sac2 f 31.7 2.9E+02 0.0062 29.8 9.3 66 249-316 147-219 (508)
315 PF02841 GBP_C: Guanylate-bind 31.7 5.2E+02 0.011 25.6 12.3 14 134-147 79-92 (297)
316 PRK00591 prfA peptide chain re 31.7 4E+02 0.0086 28.2 10.0 85 227-312 5-99 (359)
317 PF12711 Kinesin-relat_1: Kine 31.6 2.7E+02 0.0058 24.1 7.3 23 210-232 20-42 (86)
318 KOG1937 Uncharacterized conser 31.4 7.8E+02 0.017 27.5 16.1 124 124-259 267-395 (521)
319 PF02994 Transposase_22: L1 tr 31.3 1.9E+02 0.0041 30.1 7.6 21 299-319 176-196 (370)
320 PF08912 Rho_Binding: Rho Bind 31.2 3.2E+02 0.0069 23.0 7.7 30 272-301 36-65 (69)
321 PF04899 MbeD_MobD: MbeD/MobD 31.2 90 0.0019 25.9 4.3 31 382-412 30-60 (70)
322 PF05278 PEARLI-4: Arabidopsis 31.2 6E+02 0.013 26.1 17.6 133 133-287 119-255 (269)
323 COG0172 SerS Seryl-tRNA synthe 31.2 3.6E+02 0.0078 29.2 9.8 56 214-269 36-91 (429)
324 COG1842 PspA Phage shock prote 31.1 5.3E+02 0.011 25.4 13.2 107 106-243 29-135 (225)
325 KOG0288 WD40 repeat protein Ti 30.9 7.6E+02 0.017 27.2 15.3 94 246-341 76-172 (459)
326 KOG1103 Predicted coiled-coil 30.6 7.5E+02 0.016 27.1 23.5 74 99-185 87-163 (561)
327 KOG2391 Vacuolar sorting prote 30.5 1.4E+02 0.0029 31.9 6.4 59 172-246 225-283 (365)
328 PF13094 CENP-Q: CENP-Q, a CEN 30.5 2E+02 0.0043 25.9 6.8 44 203-246 30-73 (160)
329 PHA03011 hypothetical protein; 30.4 1.9E+02 0.004 26.4 6.4 54 181-234 66-119 (120)
330 PF01920 Prefoldin_2: Prefoldi 30.4 1.4E+02 0.0031 24.2 5.4 13 184-196 10-22 (106)
331 TIGR03752 conj_TIGR03752 integ 30.3 3E+02 0.0064 30.3 9.1 82 207-313 59-141 (472)
332 PF05377 FlaC_arch: Flagella a 30.1 1.7E+02 0.0037 23.5 5.5 40 199-238 6-45 (55)
333 PF15186 TEX13: Testis-express 29.9 1.8E+02 0.004 27.6 6.6 61 230-312 87-148 (152)
334 PF15254 CCDC14: Coiled-coil d 29.4 1E+03 0.022 28.3 23.0 49 384-436 551-599 (861)
335 PF07200 Mod_r: Modifier of ru 29.4 4E+02 0.0086 23.5 15.3 39 124-162 6-46 (150)
336 TIGR00020 prfB peptide chain r 29.4 4.2E+02 0.0092 28.0 9.8 55 230-285 25-87 (364)
337 KOG0018 Structural maintenance 29.4 1.1E+03 0.025 28.8 17.2 173 106-306 730-902 (1141)
338 PF11853 DUF3373: Protein of u 29.1 45 0.00097 36.5 2.9 31 215-245 32-62 (489)
339 KOG2002 TPR-containing nuclear 29.0 9.8E+02 0.021 28.9 13.3 98 211-313 773-883 (1018)
340 PF15233 SYCE1: Synaptonemal c 28.9 4.9E+02 0.011 24.4 9.6 26 259-284 33-58 (134)
341 PF12004 DUF3498: Domain of un 28.9 19 0.0004 39.3 0.0 98 219-317 374-483 (495)
342 TIGR02338 gimC_beta prefoldin, 28.6 3.8E+02 0.0082 23.0 9.5 39 231-273 70-108 (110)
343 PRK10929 putative mechanosensi 28.5 1.1E+03 0.025 28.5 20.1 56 101-156 58-115 (1109)
344 KOG4787 Uncharacterized conser 28.5 9.9E+02 0.021 27.8 13.1 136 137-313 394-547 (852)
345 PF13863 DUF4200: Domain of un 28.4 3.7E+02 0.008 22.8 13.4 71 213-283 48-118 (126)
346 PRK04406 hypothetical protein; 28.4 3.5E+02 0.0075 22.5 7.4 46 345-411 11-56 (75)
347 TIGR01000 bacteriocin_acc bact 27.8 7.2E+02 0.016 26.0 20.3 12 427-438 440-451 (457)
348 KOG4005 Transcription factor X 27.8 2.3E+02 0.005 29.1 7.3 10 328-337 237-246 (292)
349 cd00632 Prefoldin_beta Prefold 27.7 3.8E+02 0.0081 22.7 7.6 19 251-269 82-100 (105)
350 PF02403 Seryl_tRNA_N: Seryl-t 27.7 3.6E+02 0.0079 22.5 7.8 11 249-259 53-63 (108)
351 cd00890 Prefoldin Prefoldin is 27.5 3.7E+02 0.0081 22.6 10.5 93 182-285 2-126 (129)
352 PRK00846 hypothetical protein; 27.5 3.6E+02 0.0077 22.9 7.3 65 344-429 12-76 (77)
353 PF12761 End3: Actin cytoskele 27.4 3.6E+02 0.0077 26.5 8.3 24 214-237 160-183 (195)
354 PF02841 GBP_C: Guanylate-bind 27.2 6.3E+02 0.014 25.1 17.2 30 106-135 98-127 (297)
355 PRK10476 multidrug resistance 27.2 6.3E+02 0.014 25.1 14.9 19 302-320 197-215 (346)
356 PF02646 RmuC: RmuC family; I 27.1 1.6E+02 0.0034 29.6 6.1 120 220-345 5-139 (304)
357 PF10458 Val_tRNA-synt_C: Valy 27.0 3.2E+02 0.0068 21.6 6.6 58 169-233 4-65 (66)
358 PRK00736 hypothetical protein; 26.9 3.4E+02 0.0075 22.0 7.2 67 341-429 1-67 (68)
359 PRK10636 putative ABC transpor 26.9 2.5E+02 0.0055 30.8 8.0 66 217-283 559-628 (638)
360 PF07111 HCR: Alpha helical co 26.8 1.1E+03 0.023 27.7 24.5 190 113-313 413-650 (739)
361 PF12711 Kinesin-relat_1: Kine 26.5 4.3E+02 0.0093 22.9 8.2 62 247-311 25-86 (86)
362 PF15188 CCDC-167: Coiled-coil 26.3 1.8E+02 0.0038 25.1 5.4 15 184-198 17-31 (85)
363 PF12325 TMF_TATA_bd: TATA ele 26.2 4.9E+02 0.011 23.5 12.5 27 135-161 15-41 (120)
364 PF00170 bZIP_1: bZIP transcri 26.2 2.7E+02 0.0059 21.5 6.0 23 213-235 39-61 (64)
365 PF09787 Golgin_A5: Golgin sub 25.9 8.6E+02 0.019 26.3 20.7 55 211-272 278-332 (511)
366 PF06705 SF-assemblin: SF-asse 25.9 6.1E+02 0.013 24.5 18.9 25 140-164 9-33 (247)
367 PF04645 DUF603: Protein of un 25.8 6.4E+02 0.014 24.7 10.8 52 232-283 97-161 (181)
368 KOG2010 Double stranded RNA bi 25.7 6.8E+02 0.015 27.0 10.4 68 184-262 116-184 (405)
369 PF13949 ALIX_LYPXL_bnd: ALIX 25.5 6.1E+02 0.013 24.4 20.6 15 305-319 217-231 (296)
370 cd09234 V_HD-PTP_like Protein- 25.4 7.3E+02 0.016 25.2 17.1 65 104-168 75-145 (337)
371 TIGR03752 conj_TIGR03752 integ 25.3 4.6E+02 0.0099 29.0 9.4 25 213-237 79-103 (472)
372 PF05659 RPW8: Arabidopsis bro 25.3 2E+02 0.0043 26.5 5.9 74 162-261 17-91 (147)
373 KOG0163 Myosin class VI heavy 25.2 1.3E+03 0.027 27.9 14.2 85 184-268 845-936 (1259)
374 TIGR01063 gyrA DNA gyrase, A s 25.1 9.6E+02 0.021 27.7 12.3 39 223-261 429-470 (800)
375 PF03999 MAP65_ASE1: Microtubu 25.1 1.9E+02 0.0042 31.7 6.8 166 103-277 216-408 (619)
376 PF09744 Jnk-SapK_ap_N: JNK_SA 25.0 5.8E+02 0.013 24.0 11.1 136 122-281 10-145 (158)
377 PF07989 Microtub_assoc: Micro 24.8 3.9E+02 0.0085 22.2 7.0 51 184-240 19-69 (75)
378 KOG3215 Uncharacterized conser 24.6 6.5E+02 0.014 25.4 9.5 21 263-283 153-173 (222)
379 PF08232 Striatin: Striatin fa 24.3 2.4E+02 0.0052 25.5 6.1 56 170-233 17-72 (134)
380 COG1382 GimC Prefoldin, chaper 24.0 5.6E+02 0.012 23.4 10.0 90 179-272 6-103 (119)
381 PF02050 FliJ: Flagellar FliJ 23.9 3.7E+02 0.0081 21.3 11.9 89 212-300 3-92 (123)
382 PF02601 Exonuc_VII_L: Exonucl 23.9 7.1E+02 0.015 24.6 12.7 118 107-234 157-274 (319)
383 TIGR01000 bacteriocin_acc bact 23.8 8.6E+02 0.019 25.5 15.9 18 302-319 305-322 (457)
384 PRK04406 hypothetical protein; 23.6 4.1E+02 0.009 22.0 6.9 39 204-242 22-60 (75)
385 PF08581 Tup_N: Tup N-terminal 23.5 4.5E+02 0.0098 22.2 8.3 26 213-238 38-63 (79)
386 cd07685 F-BAR_Fes The F-BAR (F 23.4 7.5E+02 0.016 25.1 9.9 127 216-362 71-199 (237)
387 PF08606 Prp19: Prp19/Pso4-lik 23.3 4.5E+02 0.0097 22.2 7.0 33 251-283 20-52 (70)
388 KOG0288 WD40 repeat protein Ti 23.3 1E+03 0.022 26.3 11.8 121 214-357 13-135 (459)
389 PF04102 SlyX: SlyX; InterPro 23.2 3.9E+02 0.0085 21.4 6.6 37 206-242 17-53 (69)
390 TIGR00237 xseA exodeoxyribonuc 23.1 9.1E+02 0.02 25.6 12.4 25 108-132 270-294 (432)
391 PF14282 FlxA: FlxA-like prote 23.1 3.7E+02 0.008 23.3 6.8 65 211-276 16-81 (106)
392 KOG4677 Golgi integral membran 23.0 1.1E+03 0.024 26.5 17.2 176 92-280 153-336 (554)
393 TIGR02231 conserved hypothetic 23.0 5.5E+02 0.012 27.4 9.5 15 184-198 76-90 (525)
394 smart00150 SPEC Spectrin repea 22.8 3.5E+02 0.0075 20.5 9.4 42 206-247 30-71 (101)
395 PF10481 CENP-F_N: Cenp-F N-te 22.7 3.2E+02 0.0068 28.6 7.3 68 255-322 20-94 (307)
396 COG1340 Uncharacterized archae 22.7 8.9E+02 0.019 25.3 24.3 91 177-278 105-197 (294)
397 TIGR02473 flagell_FliJ flagell 22.6 4.8E+02 0.01 22.2 14.3 62 246-307 75-137 (141)
398 PRK00286 xseA exodeoxyribonucl 22.6 8.9E+02 0.019 25.2 12.1 56 107-167 274-329 (438)
399 KOG4256 Kinetochore component 22.5 5.8E+02 0.013 31.7 10.0 135 267-421 845-1013(2209)
400 KOG0289 mRNA splicing factor [ 22.4 1.7E+02 0.0037 32.2 5.6 57 206-287 63-119 (506)
401 TIGR02894 DNA_bind_RsfA transc 22.1 4.7E+02 0.01 25.1 7.8 37 124-160 33-71 (161)
402 PF04136 Sec34: Sec34-like fam 22.0 6.3E+02 0.014 23.3 9.4 98 213-349 13-110 (157)
403 PF07889 DUF1664: Protein of u 22.0 6.2E+02 0.013 23.2 9.3 77 142-243 49-125 (126)
404 PF11262 Tho2: Transcription f 22.0 5E+02 0.011 26.1 8.5 69 243-311 43-116 (298)
405 KOG0998 Synaptic vesicle prote 21.8 3.5E+02 0.0075 31.5 8.2 74 162-242 460-533 (847)
406 PF05278 PEARLI-4: Arabidopsis 21.6 7E+02 0.015 25.7 9.4 32 213-244 213-244 (269)
407 KOG4687 Uncharacterized coiled 21.6 9.8E+02 0.021 25.4 13.5 57 205-261 172-233 (389)
408 PF07851 TMPIT: TMPIT-like pro 21.5 4.8E+02 0.01 27.4 8.4 46 220-265 3-48 (330)
409 TIGR02231 conserved hypothetic 21.4 8.5E+02 0.018 26.0 10.5 36 108-143 71-106 (525)
410 PRK13729 conjugal transfer pil 21.4 1.9E+02 0.0042 31.7 5.8 58 206-267 68-125 (475)
411 PF06810 Phage_GP20: Phage min 21.3 6.2E+02 0.013 23.4 8.3 43 213-263 26-68 (155)
412 PF09731 Mitofilin: Mitochondr 21.2 1E+03 0.023 25.5 21.3 34 140-173 255-288 (582)
413 PF05701 WEMBL: Weak chloropla 21.1 1.1E+03 0.023 25.7 25.9 128 101-228 123-263 (522)
414 PF14992 TMCO5: TMCO5 family 21.1 9.4E+02 0.02 24.9 10.9 93 184-277 23-126 (280)
415 PF14854 LURAP: Leucine rich a 21.0 1.5E+02 0.0034 27.2 4.2 43 141-184 20-62 (121)
416 PRK00373 V-type ATP synthase s 20.9 3.4E+02 0.0075 25.7 6.8 53 220-276 10-62 (204)
417 PF14915 CCDC144C: CCDC144C pr 20.8 1E+03 0.022 25.1 19.8 105 174-278 188-303 (305)
418 COG3879 Uncharacterized protei 20.8 4.3E+02 0.0093 26.9 7.7 30 250-279 54-83 (247)
419 PF07200 Mod_r: Modifier of ru 20.8 5.8E+02 0.013 22.5 7.8 39 244-283 60-98 (150)
420 PRK06975 bifunctional uroporph 20.7 7.1E+02 0.015 27.9 10.1 97 208-309 379-478 (656)
421 smart00502 BBC B-Box C-termina 20.7 4.6E+02 0.01 21.2 13.0 101 216-319 9-111 (127)
422 PRK12705 hypothetical protein; 20.5 1.2E+03 0.026 25.9 17.6 28 380-407 253-280 (508)
423 TIGR03755 conj_TIGR03755 integ 20.5 5.2E+02 0.011 28.2 8.6 71 123-228 308-378 (418)
424 PF09728 Taxilin: Myosin-like 20.4 9.3E+02 0.02 24.6 24.9 204 102-319 37-275 (309)
425 PRK00578 prfB peptide chain re 20.2 1.1E+03 0.023 25.2 10.7 55 230-285 25-87 (367)
426 PF10883 DUF2681: Protein of u 20.1 3.2E+02 0.0069 23.7 5.8 44 255-298 25-68 (87)
427 PF03961 DUF342: Protein of un 20.1 2.7E+02 0.0058 29.2 6.4 70 211-280 331-402 (451)
428 PF07544 Med9: RNA polymerase 20.1 3.3E+02 0.0072 22.6 5.8 49 184-236 33-81 (83)
429 PF12777 MT: Microtubule-bindi 20.0 7.9E+02 0.017 25.0 9.5 11 298-308 103-113 (344)
No 1
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.79 E-value=0.013 Score=63.54 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=27.5
Q ss_pred hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 173 RFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
.+.+++..+++++....+....+...+..-................+..++..+.+++..+..
T Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 845 (1179)
T TIGR02168 783 EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544444444443333333333333444444444433333333333
No 2
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.51 E-value=0.077 Score=57.84 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=16.5
Q ss_pred cHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHh
Q 039269 381 SDDELRQML---TDIFIDNARLRMQVNTVIRCALN 412 (439)
Q Consensus 381 tddElRKmL---aDlfiDNA~LRkqvNSv~R~Al~ 412 (439)
.+.++++.| .+.|.. ....+|.+...-+.
T Consensus 1019 i~~~~~~~f~~~~~~F~~---v~~~f~~~F~~lf~ 1050 (1179)
T TIGR02168 1019 LEEAIEEIDREARERFKD---TFDQVNENFQRVFP 1050 (1179)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 455666666 666643 34556666665554
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.50 E-value=0.028 Score=60.67 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=87.4
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---ccccchhH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV---KSKTDVKL 250 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa---kskad~Kv 250 (439)
+-+..|++++|+.++.+..+.|+... .--.+|...|.+.....++.++.|+.+...++- ..+++.-.
T Consensus 327 Lh~aRLe~aql~~qLad~~l~lke~~----------~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qk 396 (546)
T PF07888_consen 327 LHQARLEAAQLKLQLADASLELKEGR----------SQWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQK 396 (546)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999998888888776553 223455555666555556666666655544433 24667778
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
|.+++...+.+..--=.|..+-+.|+..--+++|.||+. -..=+..|++.++.|+.||.--
T Consensus 397 L~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEq---l~~EkQeL~~yi~~Le~r~~~~ 457 (546)
T PF07888_consen 397 LEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQ---LQEEKQELLEYIERLEQRLDKV 457 (546)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888777544445566666666666789999833 3334568999999999999854
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.45 E-value=0.099 Score=57.45 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHH
Q 039269 106 LNRVLNNMQQRLT 118 (439)
Q Consensus 106 lnRvl~Tmq~Rl~ 118 (439)
+..-+..++..+.
T Consensus 263 ~~~~~~~~~~~~~ 275 (1164)
T TIGR02169 263 LEKRLEEIEQLLE 275 (1164)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 5
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.26 E-value=0.55 Score=54.07 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=9.8
Q ss_pred ccccccccCCCCcccc
Q 039269 7 DTAKSKTLPGGEAELL 22 (439)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (439)
++..++|++-+++...
T Consensus 565 ~~gr~tflpl~~i~~~ 580 (1163)
T COG1196 565 KAGRATFLPLDRIKPL 580 (1163)
T ss_pred CCCccccCchhhhccc
Confidence 4556667777666633
No 6
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.22 E-value=0.15 Score=52.01 Aligned_cols=203 Identities=23% Similarity=0.299 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhh-hhhhhccHHHHHHH
Q 039269 109 VLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKER-FTQMQWDMEELRKQ 187 (439)
Q Consensus 109 vl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr-~tqmQWdmeElr~k 187 (439)
|-+||=+||..+|-+.|+|+-.+=||. +||| ++|.-.|...++ -|-.|+++.-.|-|. |..++--++.|++.
T Consensus 78 isN~LlKkl~~l~keKe~L~~~~e~EE---E~lt---n~L~rkl~qLr~-EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e 150 (310)
T PF09755_consen 78 ISNTLLKKLQQLKKEKETLALKYEQEE---EFLT---NDLSRKLNQLRQ-EKVELENQLEQEQEYLVNKLQKKIERLEKE 150 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777776666543 3443 233333333322 233566666666665 45544444555554
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHhhhhh---------------hh----hccccc
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQ-ENEMLLQELEVVREQLENLHKQHEE---------------SE----VKSKTD 247 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~-e~~~l~qEL~~~r~~le~L~k~~~E---------------lE----akskad 247 (439)
...+...|.-...+|...|.+++.--. =.+-|-+.++.+...=..|+.+++. +. .+.-+.
T Consensus 151 ~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~sh 230 (310)
T PF09755_consen 151 KSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSH 230 (310)
T ss_pred HHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHH
Confidence 444555555555666655555432110 0122333333332222333333221 00 234455
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHhhhhcccccccccc
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHE---CEILRNRLQECSVNFLSEEED 324 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhE---c~iLr~RLQECn~~~l~ee~d 324 (439)
++.|..||..||.++...+++- .......++.|++..+.-...+++|.+| |..|+-.|-|.-..+=++++-
T Consensus 231 I~~Lr~EV~RLR~qL~~sq~e~------~~k~~~~~~eek~ireEN~rLqr~L~~E~erreal~R~lsesEsslE~ddEr 304 (310)
T PF09755_consen 231 IRSLRQEVSRLRQQLAASQQEH------SEKMAQYLQEEKEIREENRRLQRKLQREVERREALCRHLSESESSLEMDDER 304 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHh
Confidence 7788888888887776444433 3445667778888888788888888776 678888888776666555544
No 7
>PRK02224 chromosome segregation protein; Provisional
Probab=96.78 E-value=0.87 Score=50.02 Aligned_cols=42 Identities=10% Similarity=0.219 Sum_probs=25.2
Q ss_pred eechhhhhhHHHH---HHHHHHHHHHhhhchHHHHHHhhHHHHHH
Q 039269 97 ALPSDQRLKLNRV---LNNMQQRLTAAKADTEDLLARLNQEVAVR 138 (439)
Q Consensus 97 vlP~dqR~KlnRv---l~Tmq~Rl~taKTDmEDLiaRLnQE~AVk 138 (439)
-||.+.+.+++.+ +.+++..+..++...+.+-..++.+..+.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~ 512 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIE 512 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5565555555553 66667777777776666666555444443
No 8
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.63 E-value=0.74 Score=50.13 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHH--------------HHHHHhhhhhhHHHHHHhhHhhHHH
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAV--------------RQFLTTKVKDLEVELETTSENCKEN 162 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AV--------------k~fL~tKVkDLEveLettkqk~ke~ 162 (439)
.|..-+..|+.-|.+.+-.|+.|-...-.-... ..=+..+++.||.++.+..++.++.
T Consensus 168 ~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~ 239 (546)
T PF07888_consen 168 QLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQ 239 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444556666666666666655432111111 2224667888888888888877543
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.51 E-value=1.1 Score=51.74 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=25.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVV 226 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~ 226 (439)
.+.+..+.|.+..+..+..+++..+..........+....+.....+.+.+++..+
T Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l 833 (1163)
T COG1196 778 KEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666655555555555555554444333333333333333333333333333
No 10
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.47 E-value=0.17 Score=50.45 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhh
Q 039269 109 VLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENC 159 (439)
Q Consensus 109 vl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ 159 (439)
+...|+.++...+.|.+.|.+.+++--.+..=|..+-..|+.++...++..
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666666666666666665555443
No 11
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.86 Score=53.14 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=37.3
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhh--HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDER--ARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek--~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
+.+.=++.++++++.+.+.+++...... ...+....+...+.+++..+++..+.+.+.+++++.+|
T Consensus 795 ~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888888777654322 12334444444555555444444455555555555555
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=96.28 E-value=2.4 Score=46.64 Aligned_cols=13 Identities=31% Similarity=0.598 Sum_probs=7.3
Q ss_pred chhhhhhHHHHHH
Q 039269 99 PSDQRLKLNRVLN 111 (439)
Q Consensus 99 P~dqR~KlnRvl~ 111 (439)
|.+-+.-+.+|+.
T Consensus 148 p~~R~~ii~~l~~ 160 (880)
T PRK02224 148 PSDRQDMIDDLLQ 160 (880)
T ss_pred HHHHHHHHHHHhC
Confidence 4455555666653
No 13
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=96.12 E-value=0.26 Score=44.60 Aligned_cols=105 Identities=20% Similarity=0.347 Sum_probs=66.6
Q ss_pred HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 163 MQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 163 lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
.+.-+-....++++++|.+++++.+..+.+..+...++...... +......++++..+..++.+.+++.++.
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~l~~l~~~~~~~~~e~~~l~- 150 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR-------ELLKSVEERLDSLDESIKELEKEIRELQ- 150 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 44456666788999999999999999999999988866665554 4445555555666666666666655555
Q ss_pred ccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 243 KSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 243 kskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
++++-++..-..+.+++.+.-..+..++..++.
T Consensus 151 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (191)
T PF04156_consen 151 ----------KELQDSREEVQELRSQLERLQENLQQLEEKIQE 183 (191)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555555544444444444433
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.04 E-value=1.5 Score=41.98 Aligned_cols=121 Identities=26% Similarity=0.321 Sum_probs=56.0
Q ss_pred HHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHH--------------------HHHHHHHHhhh
Q 039269 113 MQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKE--------------------NMQQAVLNEKE 172 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke--------------------~lqQAvl~ERE 172 (439)
.+.|+..+.+..++.-.|+.+..+==.=|..|+..||.+|+.+-.+... +|++-...-=+
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~ee 92 (237)
T PF00261_consen 13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEE 92 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444445555544444454444444444555555555555544433222 22322222245
Q ss_pred hhhhhhccHHHHHHHHHHHHH-------hhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 173 RFTQMQWDMEELRKQLLETEL-------KLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~-------~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
||.++.+.+.+.+..+.+.+. +|+..+++-..++.....+-.....|.++|..+...+.+|
T Consensus 93 ri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 93 RIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHh
Confidence 666666666555544444443 3333444444444444444444444444444444444333
No 15
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.97 E-value=0.67 Score=51.82 Aligned_cols=160 Identities=26% Similarity=0.287 Sum_probs=119.9
Q ss_pred hhHHHHHH-HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhh
Q 039269 131 LNQEVAVR-QFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSK 209 (439)
Q Consensus 131 LnQE~AVk-~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~ 209 (439)
|=||.|-| .||+.+|.+||.||-.+++..-- +..|++|++++.- +++..+..+|.......++---....-
T Consensus 21 Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~-----~~~e~~rl~~~~~---~~~~~~~~~e~~~~~lr~e~ke~K~rE 92 (717)
T PF09730_consen 21 LLQESASKEAYLQQRILELENELKQLRQELSN-----VQAENERLSQLNQ---ELRKECEDLELERKRLREEIKEYKFRE 92 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666665 59999999999999887765432 4579999999654 567788888888777777777777777
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
+-..+++-.|.+|-=.+++||-.|.+-..|+|. -|-++|.|--|+-.|+++.-++-.=..-+=++..|.=..|+.||
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~sQvefE~-~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~ER-- 169 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQSQVEFEG-LKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSER-- 169 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 778899999999999999999999999999995 68899999999999988886655444434444444444566666
Q ss_pred HHHHHHHHHHHHh
Q 039269 290 MEHADIANLKLLH 302 (439)
Q Consensus 290 ~e~~~~ar~Kllh 302 (439)
|...+-|+.|=|
T Consensus 170 -eqk~~LrkEL~~ 181 (717)
T PF09730_consen 170 -EQKNALRKELDQ 181 (717)
T ss_pred -HHHHHHHHHHHH
Confidence 444455554433
No 16
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.93 E-value=2.1 Score=52.58 Aligned_cols=138 Identities=22% Similarity=0.245 Sum_probs=91.4
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHH--HHHHHHhhhhhhhhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENM--QQAVLNEKERFTQMQ 178 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~l--qQAvl~EREr~tqmQ 178 (439)
+.=.||++-=+-++.++....+|....=..+|+-...+.=|..-|.|||+.|+..++...+.- ...+-. + ..-+|
T Consensus 978 e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~--e-l~~~~ 1054 (1930)
T KOG0161|consen 978 ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEG--E-LKDLQ 1054 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHhh
Confidence 444688888888899999999998888889999999999999999999999988776554433 122211 1 13344
Q ss_pred ccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccch
Q 039269 179 WDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDV 248 (439)
Q Consensus 179 WdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~ 248 (439)
-.++++-.+-.+++..|+.. +++...+..+.+....++...++++..|+.++.+++..-.+++
T Consensus 1055 e~~~~~~~~~~el~~~l~kk-------e~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er 1117 (1930)
T KOG0161|consen 1055 ESIEELKKQKEELDNQLKKK-------ESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAER 1117 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666655 4444445555566666666666666666666666554443333
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.79 E-value=2.2 Score=49.55 Aligned_cols=220 Identities=23% Similarity=0.310 Sum_probs=105.7
Q ss_pred hhchHHHHHHhhHHHHHH----------HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHH
Q 039269 121 KADTEDLLARLNQEVAVR----------QFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLE 190 (439)
Q Consensus 121 KTDmEDLiaRLnQE~AVk----------~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e 190 (439)
+.|+++++++++++-.++ +-||.|+.|++...+.-+++-+...+...-.-+++....+=...+++.+..+
T Consensus 341 ~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 420 (1201)
T PF12128_consen 341 DADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKAERREQIEE 420 (1201)
T ss_pred HCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999876654 4789999999999999888877766654444444444443333334444443
Q ss_pred HHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 191 TELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 191 ~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
-...+........ .........+...+..++...+.++.+...--++ ..++..+-+++-..+..+....+.+.
T Consensus 421 ~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~-----~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (1201)
T PF12128_consen 421 EYQALEQELRQQS--QEQLEELQEQREQLKSELAELKQQLKNPQYTEEE-----KEQLEQADKRLEQAQEQQNQAQQAVE 493 (1201)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333321111 1112222333333333333333333322211111 22333344444444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhh----hccchh
Q 039269 271 RLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLL----TTSDNR 346 (439)
Q Consensus 271 ~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLL----aTSDnR 346 (439)
++-.+ .+.-++..+.+.....+.=.+..-+++++.+|.--+. -..|+| +..| -.=-+.
T Consensus 494 ~~~~~-------~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~-p~~gSL----------~~fL~~~~p~We~t 555 (1201)
T PF12128_consen 494 ELQAE-------EQELRKERDQAEEELRQARRELEELRAQIAELQRQLD-PQKGSL----------LEFLRKNKPGWEQT 555 (1201)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCcH----------HHHHHhCCCcHHHH
Confidence 33222 2222222233333333333344445555665554332 223322 1111 011256
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 039269 347 IGLLVAETQLLAQDIERSM 365 (439)
Q Consensus 347 I~lLlAEaQlL~~d~E~~~ 365 (439)
||-+|.|..|.-.|-.+..
T Consensus 556 IGKVid~eLL~r~dL~P~l 574 (1201)
T PF12128_consen 556 IGKVIDEELLYRTDLEPQL 574 (1201)
T ss_pred hHhhCCHHHhcCCCCCCee
Confidence 9999999976666665543
No 18
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.74 E-value=2.2 Score=45.72 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=110.3
Q ss_pred hHHHHHHHHHHHHHHhhhchHHH---HHHhh--------------HHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHH
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDL---LARLN--------------QEVAVRQFLTTKVKDLEVELETTSENCKENMQQAV 167 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDL---iaRLn--------------QE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAv 167 (439)
+-..|+..++..+..-+..|+++ +..+. ++.-..+|--+.+ +++.++.+.+....+++....
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~-~i~~~i~~l~~~i~~~~~~l~ 273 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHL-DIEKEIQDLKEQIDENLALLE 273 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCC-ChHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888865 33332 2333444544443 467777777776666553321
Q ss_pred HHhhhhhhhhhccHHHHHHHHHHHHHhhhh-------HH-------hhhHhhhhhhhhhHHHHHHHHHHHHHHHHH----
Q 039269 168 LNEKERFTQMQWDMEELRKQLLETELKLKY-------EQ-------DERARAESSKMSIIQENEMLLQELEVVREQ---- 229 (439)
Q Consensus 168 l~EREr~tqmQWdmeElr~k~~e~E~~Lks-------~q-------dek~~~e~~~~s~~~e~~~l~qEL~~~r~~---- 229 (439)
= = ++++...+...++..+.. +. ...........-+..+++.|..|++.+++.
T Consensus 274 ~---l-------~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~ 343 (569)
T PRK04778 274 E---L-------DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLN 343 (569)
T ss_pred h---c-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 1 1 222233333333322222 22 222223333444555566666666666555
Q ss_pred ------HHHHHhhhhhhhhccccchhH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 230 ------LENLHKQHEESEVKSKTDVKL---LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKL 300 (439)
Q Consensus 230 ------le~L~k~~~ElEakskad~Kv---LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~Kl 300 (439)
+..+.++..+++..-+..... -......+.....++.+.++...++..++...|+.=+.....++.--.++
T Consensus 344 ~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~ 423 (569)
T PRK04778 344 ESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERY 423 (569)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433311100 00112233344444444555555555555554444333333333323333
Q ss_pred HhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHHHHHH
Q 039269 301 LHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAE 353 (439)
Q Consensus 301 lhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAE 353 (439)
-...+-++.+++..++.-+ |.+-++++.+..++|.-|-.+
T Consensus 424 ~~~L~~ikr~l~k~~lpgi-------------p~~y~~~~~~~~~~i~~l~~~ 463 (569)
T PRK04778 424 RNKLHEIKRYLEKSNLPGL-------------PEDYLEMFFEVSDEIEALAEE 463 (569)
T ss_pred HHHHHHHHHHHHHcCCCCC-------------cHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555544433 677788888888888766553
No 19
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.73 E-value=3.1 Score=47.07 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh-------HhhHHHHHHHHH-------------H
Q 039269 110 LNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS-------ENCKENMQQAVL-------------N 169 (439)
Q Consensus 110 l~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk-------qk~ke~lqQAvl-------------~ 169 (439)
+..|+.|+.++.+|...++.=|-.+-..-.|+-.|+.-++.+|.-+. .+......|..= .
T Consensus 254 i~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 254 IYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred HHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34566677777777777755555555555566666777776665554 233322223222 2
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchh
Q 039269 170 EKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVK 249 (439)
Q Consensus 170 EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~K 249 (439)
=..+-+.+|=|+|.||.++-+-+.-+.-.+..-......+.....|.+-+...++...-.+..|++.++.|+-.-+-.-+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455778999999999999999999888888888888888889999999999999999999999999999888776666
Q ss_pred HHHHHHHHHh
Q 039269 250 LLVKEVKSLR 259 (439)
Q Consensus 250 vLvKEVKsLR 259 (439)
.|..+.-.|+
T Consensus 414 ql~~~k~Rl~ 423 (775)
T PF10174_consen 414 QLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHh
Confidence 6777776777
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.69 E-value=2.9 Score=43.32 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhccc---cchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 223 LEVVREQLENLHKQHEESEVKSK---TDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 223 L~~~r~~le~L~k~~~ElEaksk---ad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
+..+.+....|+.+.++++.... .+++.|..+.+.++....++.+++.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~ 403 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKY 403 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444422 2244444555555555555555443
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.68 E-value=4.5 Score=48.75 Aligned_cols=137 Identities=18% Similarity=0.253 Sum_probs=95.8
Q ss_pred eeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhh
Q 039269 96 LALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFT 175 (439)
Q Consensus 96 ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~t 175 (439)
+.=|.+=|..+-.+.+ ...+...|+..++..=.+|..--.+-..|..+++.|+.+.+..++.....- + .+.--..+.
T Consensus 275 ~r~~eERR~liEEAag-~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e-~lr~q~ei~ 351 (1486)
T PRK04863 275 MRHANERRVHLEEALE-LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-T-ALRQQEKIE 351 (1486)
T ss_pred hhCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence 5667777888888865 458888888877777777777777779999999999999998877643332 2 222246678
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
+++.++++|..+..+.+..+...+......+.....+..+.+.+..++...++.+..++.
T Consensus 352 ~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~ 411 (1486)
T PRK04863 352 RYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQT 411 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887776666555555555555555555555444444444433
No 22
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=95.67 E-value=1.4 Score=41.93 Aligned_cols=148 Identities=22% Similarity=0.313 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHh-------hhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhh
Q 039269 105 KLNRVLNNMQQRLTAA-------KADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQM 177 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~ta-------KTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqm 177 (439)
+=|++|..+|.|..-| .+|+..||++-|.||-|=.- +.+......-++.++-++...+-.=
T Consensus 33 ~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~---~LR~~q~~~r~~~~klk~~~~el~k--------- 100 (194)
T PF15619_consen 33 KENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRE---RLRKSQEQERELERKLKDKDEELLK--------- 100 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 3488999999996655 48999999999999977433 3333333333333333333222111
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHH
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKS 257 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKs 257 (439)
++.++.- |+..-.++ -..|.+.|..+|+.+...++.--+...+|+.+...--|-..+++.+
T Consensus 101 ------~~~~l~~----L~~L~~dk---------nL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~ 161 (194)
T PF15619_consen 101 ------TKDELKH----LKKLSEDK---------NLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLAS 161 (194)
T ss_pred ------HHHHHHH----HHHHHHcC---------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111111 11111111 1234455666666666666666666666666666666666666666
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 258 LRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 258 LR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
-+..+.++..++..+..+-..+...|
T Consensus 162 e~kK~~~~~~~~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 162 EKKKHKEAQEEVKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665554
No 23
>PRK09039 hypothetical protein; Validated
Probab=95.66 E-value=2.5 Score=43.01 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=72.3
Q ss_pred HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHH
Q 039269 139 QFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEM 218 (439)
Q Consensus 139 ~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~ 218 (439)
=||..-|..++.+|+.....-.+ |-..+--||.+-..+|=.+.+++..+. ..+..+...+...+........
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~-L~e~L~le~~~~~~l~~~l~~l~~~l~-------~a~~~r~~Le~~~~~~~~~~~~ 113 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAE-LADLLSLERQGNQDLQDSVANLRASLS-------AAEAERSRLQALLAELAGAGAA 113 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhhhcch
Confidence 34444444444444444444333 333333345555554444444444433 2222223333322222222222
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 219 LLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANL 298 (439)
Q Consensus 219 l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~ 298 (439)
+...+......|..+...|.+ +..++..|-.+|-.||.+...|..+|..+-....+...-+..=+++-+.+.+.+.
T Consensus 114 ~~~~~~~l~~~L~~~k~~~se----~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~ 189 (343)
T PRK09039 114 AEGRAGELAQELDSEKQVSAR----ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRV 189 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333333333333333322 3445566666666666666666666666555555554444444444443333312
Q ss_pred -HHHhHHHHHHHHhhhhcc
Q 039269 299 -KLLHECEILRNRLQECSV 316 (439)
Q Consensus 299 -KllhEc~iLr~RLQECn~ 316 (439)
.|-.=+.-+..||++|-.
T Consensus 190 ~~l~~~~~~~~~~l~~~~~ 208 (343)
T PRK09039 190 QELNRYRSEFFGRLREILG 208 (343)
T ss_pred HHHHHhHHHHHHHHHHHhC
Confidence 222223445555665543
No 24
>PRK11637 AmiB activator; Provisional
Probab=95.46 E-value=3.6 Score=42.23 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 039269 106 LNRVLNNMQQRLT 118 (439)
Q Consensus 106 lnRvl~Tmq~Rl~ 118 (439)
+.+=+..++..+.
T Consensus 52 l~~qi~~~~~~i~ 64 (428)
T PRK11637 52 IQQDIAAKEKSVR 64 (428)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444444
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.44 E-value=6.3 Score=48.72 Aligned_cols=130 Identities=18% Similarity=0.226 Sum_probs=102.0
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
.+.++..+|++++..+...+....-.+..+..+.+++..|..|+...++.+..|.++..++|..-+- |.-.+=..+
T Consensus 930 ~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~----l~~~l~~~e 1005 (1930)
T KOG0161|consen 930 KKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRE----LQDDLQAEE 1005 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 3444557777777777777777777888889999999999999999999999999999998876543 333333344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 260 SSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 260 ~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
.....+.+-..++-.+..+++..|.+|+.......-+.+||-.++..++.-+.+
T Consensus 1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 445556666677778888999999999988888888999999999888877775
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.44 E-value=4.6 Score=49.50 Aligned_cols=215 Identities=18% Similarity=0.242 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhH------HHHHHHHHHhhhhhhhh
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCK------ENMQQAVLNEKERFTQM 177 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~k------e~lqQAvl~EREr~tqm 177 (439)
...+-.+..++..|.-.+-.|.++-.-|=-..--++|=..|.+.|+..++++|+... .++|+-|.....++--|
T Consensus 650 ~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~ 729 (1822)
T KOG4674|consen 650 KEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTL 729 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777888888888888888888888888899999999999999999988654 78899999888766666
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-------cccchhH
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK-------SKTDVKL 250 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak-------skad~Kv 250 (439)
-=+|=-|..+.--.+..+.....++...-.+..+...+++.|..|..-.+..+-+++-.+.++|.- -.+.++-
T Consensus 730 s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~e 809 (1822)
T KOG4674|consen 730 SQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKE 809 (1822)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777889999999999999999999999999999999999999999888877776555544432 2234555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccc
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMK----EKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNF 318 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~----eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~ 318 (439)
|..|+-.||..+.+.-.++...-. +....-..+..+.............+-.++..|-.++.+-+..+
T Consensus 810 L~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l 881 (1822)
T KOG4674|consen 810 LERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRL 881 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544333222222111 11222233334444444444455555555555555555544433
No 27
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.43 E-value=2.7 Score=49.67 Aligned_cols=178 Identities=26% Similarity=0.311 Sum_probs=89.2
Q ss_pred HhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHH---HHHHHHHhhhhhhh----hhccHHH---HH-------HHHHHHH
Q 039269 130 RLNQEVAVRQFLTTKVKDLEVELETTSENCKEN---MQQAVLNEKERFTQ----MQWDMEE---LR-------KQLLETE 192 (439)
Q Consensus 130 RLnQE~AVk~fL~tKVkDLEveLettkqk~ke~---lqQAvl~EREr~tq----mQWdmeE---lr-------~k~~e~E 192 (439)
++-++.+-+.=|...|++++.+|+..+++++.- +++.+-. |--+-. |+=..++ || ...++.+
T Consensus 502 k~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~-rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~ 580 (1317)
T KOG0612|consen 502 KLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSL-RKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQEL 580 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHh
Confidence 556677777888899999999999986665433 2332222 111111 1111111 11 1111111
Q ss_pred HhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------------------
Q 039269 193 LKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE---------------------------------- 238 (439)
Q Consensus 193 ~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~---------------------------------- 238 (439)
..-...++-....++.+.....++..++.+++..+.+...+...+.
T Consensus 581 e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~ 660 (1317)
T KOG0612|consen 581 EENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERI 660 (1317)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 1111233334444555555555555555555444332222221111
Q ss_pred ------hhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039269 239 ------ESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNR 310 (439)
Q Consensus 239 ------ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~R 310 (439)
.++++-...+|.+-.|++-+++.+..+ +|...-.+..+++.-|..||--.+.+.+-..++-.+|+.|++=
T Consensus 661 ~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~--~L~~~e~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~d 736 (1317)
T KOG0612|consen 661 SDSEKEALEIKLERKLKMLQNELEQENAEHHRL--RLQDKEAQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSND 736 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhh
Confidence 233333333444444444444444444 4444445666667777777777777777777777788777753
No 28
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.29 E-value=6.6 Score=44.22 Aligned_cols=113 Identities=23% Similarity=0.298 Sum_probs=76.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE 286 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E 286 (439)
....+.......+.+.+.....+++.+..+..++........+.+-+-.+.|+....++..++...+..+..+...+++.
T Consensus 315 ~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~ 394 (908)
T COG0419 315 EELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQEL 394 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444444444445555555555566666666665555666666666666677777777777777777777777888887
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccccc
Q 039269 287 KQRMEHADIANLKLLHECEILRNRLQECSVNFL 319 (439)
Q Consensus 287 kq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l 319 (439)
.++......+-.++.+.+.-+.+.+.+|.-.+-
T Consensus 395 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 395 KEELAELSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777778888888888887777776553
No 29
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.28 E-value=2.2 Score=46.83 Aligned_cols=130 Identities=19% Similarity=0.197 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQS 263 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~ 263 (439)
||.+..-|.--++-+++--..-++.++.-.+..+++..|++..-.+.|.|+++.++|-.+..-+ ++=+.+|+-.+.-..
T Consensus 264 lre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~ 342 (581)
T KOG0995|consen 264 LREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERN 342 (581)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHH
Confidence 3444333444444444444444455666688999999999999999999999999988877766 778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 264 EVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 264 elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
+|++++...-.++..+-+-+-..+-.-+...-+-.+.+-+|.-|..||.=-
T Consensus 343 ~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 343 KLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888877777666666555556667778888898888887544
No 30
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.20 E-value=11 Score=46.39 Aligned_cols=296 Identities=21% Similarity=0.262 Sum_probs=163.2
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHH--HHHHh-----------
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQ--AVLNE----------- 170 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQ--Avl~E----------- 170 (439)
..+++=|.+.+.++.+.+-++.-+++=|-..--..+-|..||.+|+..|.-++.... +|.+ ++.++
T Consensus 833 ~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~~-~l~~~~~~~d~~~~~~~Lr~~~ 911 (1822)
T KOG4674|consen 833 NSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQLL-NLDSKSSNEDATILEDTLRKEL 911 (1822)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hccccchhhhhhhhhHHHHHHH
Confidence 455666788888888888899888888888778888899999999999988776533 3332 22221
Q ss_pred ------hhhhhhhhccHHHHHHHHHHHHHhhhhHH----hhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 171 ------KERFTQMQWDMEELRKQLLETELKLKYEQ----DERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 171 ------REr~tqmQWdmeElr~k~~e~E~~Lks~q----dek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
++.+|-=+-.|.++-..++-+|..|.+.. .-+.-.+....+-..+.-.+..+|..++.+.+.|..+. ++
T Consensus 912 eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~-~~ 990 (1822)
T KOG4674|consen 912 EEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREEL-EL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 23333333334444444444444443321 01111111222222223333444444445555554444 33
Q ss_pred hhccccc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHhh
Q 039269 241 EVKSKTD-VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK-------QRMEHADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 241 Eakskad-~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek-------q~~e~~~~ar~KllhEc~iLr~RLQ 312 (439)
..+.+.+ .--+++++++|++-...+.+-.+++......+..=+..+. -.-++.-.--.....++.-|+..+-
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~ 1070 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFA 1070 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5568899999999999988888888877666665554441 1222222222333444555555555
Q ss_pred hhcccccc---------cccccceecCCCCcchhh-hhhccchhHHHHHHHHhhhhhhhhhhhcccc--cccCCCCCCCc
Q 039269 313 ECSVNFLS---------EEEDKLTVDTSSPSDAVD-LLTTSDNRIGLLVAETQLLAQDIERSMTGLD--KTCNANGSDRR 380 (439)
Q Consensus 313 ECn~~~l~---------ee~d~l~vd~Ss~sDAld-LLaTSDnRI~lLlAEaQlL~~d~E~~~~~~~--~~~~s~~~~~~ 380 (439)
.|+-.+.- ..-+.+--+-+.-.+|++ .+.-+-.||.-|..+-++|-.-.+..+..+. ..+.+..+
T Consensus 1071 ~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g--- 1147 (1822)
T KOG4674|consen 1071 KCNDELLKLKKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLG--- 1147 (1822)
T ss_pred HHHHHHHHHHhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc---
Confidence 55543321 111122222233345553 3455667888888888888665554332211 11111112
Q ss_pred cHHHHHHHHH--------------HHHHhhHHHHHHHHH
Q 039269 381 SDDELRQMLT--------------DIFIDNARLRMQVNT 405 (439)
Q Consensus 381 tddElRKmLa--------------DlfiDNA~LRkqvNS 405 (439)
+..+..++. =++.||++|+-++=+
T Consensus 1148 -~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~ 1185 (1822)
T KOG4674|consen 1148 -LSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVAS 1185 (1822)
T ss_pred -hHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 445555543 257899999988766
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.18 E-value=4.8 Score=47.19 Aligned_cols=64 Identities=13% Similarity=0.146 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
-+..+++.++.+...+++++..+..++.++..-...+.+........-...++.+.-|...+++
T Consensus 899 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 962 (1311)
T TIGR00606 899 SLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIEN 962 (1311)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444445555544444444444333333333333444444555555444443
No 32
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.18 E-value=3.1 Score=39.80 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhH
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLNQ 133 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLnQ 133 (439)
-=+.+|++|+...-.+.+..-.||..
T Consensus 36 ~e~~~l~rri~~lE~~le~~eerL~~ 61 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEERLEE 61 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33556666666666666655444433
No 33
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.04 E-value=3.6 Score=39.83 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=20.6
Q ss_pred HHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHH
Q 039269 129 ARLNQEVAVRQFLTTKVKDLEVELETTSENCKE 161 (439)
Q Consensus 129 aRLnQE~AVk~fL~tKVkDLEveLettkqk~ke 161 (439)
..|..+++++.-|-.++.-|..+|+-.++...+
T Consensus 110 k~ld~~~~~r~~le~~i~~L~eEl~fl~~~hee 142 (312)
T PF00038_consen 110 KDLDEETLARVDLENQIQSLKEELEFLKQNHEE 142 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 344556666666777777777777665554433
No 34
>PRK11637 AmiB activator; Provisional
Probab=94.46 E-value=6.8 Score=40.29 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 039269 268 ELSRLMKEKLEVEGVL 283 (439)
Q Consensus 268 El~~~~~eK~elE~~L 283 (439)
++.++-.+...++..|
T Consensus 234 ~l~~l~~~~~~L~~~I 249 (428)
T PRK11637 234 QLSELRANESRLRDSI 249 (428)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 35
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.27 E-value=11 Score=42.01 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=84.1
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERARAESS----KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKS------ 244 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~----~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEaks------ 244 (439)
+-||=-.+++-.+...|...++--+.+....++. ...-..|......+|+.++.-+..|+++.+.+.-+.
T Consensus 192 ~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~ 271 (629)
T KOG0963|consen 192 QNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSS 271 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455567778888888888888777777776666 666778888899999999888887776666554321
Q ss_pred -------------------ccchhHHHHHHHHHhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 245 -------------------KTDVKLLVKEVKSLRSSQSEV-----------KQELSRLMKEKLEVEGVLQKEKQRMEHAD 294 (439)
Q Consensus 245 -------------------kad~KvLvKEVKsLR~sq~el-----------kqEl~~~~~eK~elE~~L~~Ekq~~e~~~ 294 (439)
-..++-|+.+|+.+++|+.+. .++++.+..++.+++.-|+.-
T Consensus 272 ~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-------- 343 (629)
T KOG0963|consen 272 KKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-------- 343 (629)
T ss_pred hhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Confidence 124678899999999888654 334444444444444444322
Q ss_pred HHHHHHHhHHHHHHH
Q 039269 295 IANLKLLHECEILRN 309 (439)
Q Consensus 295 ~ar~KllhEc~iLr~ 309 (439)
.=-.++=.|.+||+.
T Consensus 344 sDYeeIK~ELsiLk~ 358 (629)
T KOG0963|consen 344 SDYEEIKKELSILKA 358 (629)
T ss_pred ccHHHHHHHHHHHHH
Confidence 222345556777764
No 36
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.25 E-value=8.6 Score=44.89 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=34.8
Q ss_pred hhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHH
Q 039269 120 AKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLE 190 (439)
Q Consensus 120 aKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e 190 (439)
.||.|| |---|+||..+|+|.|.|-+|.-....=-||=+|-. --+.|+|.|.++
T Consensus 223 skte~e---------------Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmkiql--eqlqEfkSkim~ 276 (1243)
T KOG0971|consen 223 SKTEEE---------------LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQL--EQLQEFKSKIME 276 (1243)
T ss_pred ccchHH---------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 688888 555599999999999998887644433333333322 224556655554
No 37
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.17 E-value=4.1 Score=41.78 Aligned_cols=179 Identities=21% Similarity=0.285 Sum_probs=120.8
Q ss_pred HHHHhhHHHHHH-HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHH-------------hhhhhhhhhcc------------
Q 039269 127 LLARLNQEVAVR-QFLTTKVKDLEVELETTSENCKENMQQAVLN-------------EKERFTQMQWD------------ 180 (439)
Q Consensus 127 LiaRLnQE~AVk-~fL~tKVkDLEveLettkqk~ke~lqQAvl~-------------EREr~tqmQWd------------ 180 (439)
|.||+.|..--+ ..|+.++..||..|......- ..|+.-+-. |-+.-..-.|+
T Consensus 80 laA~iGqsLl~~N~~L~~~~~~le~~L~~~~e~v-~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~ 158 (306)
T PF04849_consen 80 LAARIGQSLLEQNQDLSERNEALEEQLGAALEQV-EQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQK 158 (306)
T ss_pred HHHHHhHHHHHhcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCcHhhhcccccCCCcccccccccccccc
Confidence 568887765443 467788888888885554332 222222221 22222334444
Q ss_pred ---HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhccccchhHHHH
Q 039269 181 ---MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLL----QELEVVREQLENLHKQHEESEVKSKTDVKLLVK 253 (439)
Q Consensus 181 ---meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~----qEL~~~r~~le~L~k~~~ElEakskad~KvLvK 253 (439)
.+-|++|+..+|..-+....+-.+......+.-.+-.+|. ++|..+..++-.|+.++. +-.-+-.---.
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa----~k~Ee~~rQQE 234 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELA----RKTEENRRQQE 234 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHH----HHHHHHHHHHH
Confidence 4889999988888777776666666554444444434443 577777888877776543 22334455668
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
||=+|.++..++++.+.+++.|+.++-..|...|+ +...|--|..-|++|-.||-.-
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske-------~Q~~L~aEL~elqdkY~E~~~m 291 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQASKE-------SQRQLQAELQELQDKYAECMAM 291 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988773 4455677788899999999644
No 38
>PRK09039 hypothetical protein; Validated
Probab=94.09 E-value=3.9 Score=41.64 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=52.6
Q ss_pred HHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHH
Q 039269 190 ETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 190 e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl 269 (439)
+++..+...+++=......-.....+...|.+|++++|.|+..|+..++..|++. +..+.....|+++|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~-----------~~~~~~i~~L~~~L 181 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD-----------RESQAKIADLGRRL 181 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 4444444444444444444555667788888999999999888888888888765 56677777788888
Q ss_pred HHHHHH
Q 039269 270 SRLMKE 275 (439)
Q Consensus 270 ~~~~~e 275 (439)
..++.+
T Consensus 182 ~~a~~~ 187 (343)
T PRK09039 182 NVALAQ 187 (343)
T ss_pred HHHHHH
Confidence 887765
No 39
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.05 E-value=3.7 Score=37.71 Aligned_cols=102 Identities=27% Similarity=0.327 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHH
Q 039269 185 RKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSE 264 (439)
Q Consensus 185 r~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~e 264 (439)
+.|.+.++.+||.-+.++...+-...+.-.+.+|...++..+-.+.|+-++.... |--++-.+......
T Consensus 2 e~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~-----------L~~el~~lt~el~~ 70 (140)
T PF10473_consen 2 EEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIET-----------LEEELEELTSELNQ 70 (140)
T ss_pred cHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 3678889999998877777777766666666666666666666666655555444 44455556666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 265 VKQELSRLMKEKLEVEGVLQKEKQRMEHADIAN 297 (439)
Q Consensus 265 lkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar 297 (439)
|..+|.....+|..+.+-|++.+++..-=....
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777778888888888888888776654433333
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.99 E-value=17 Score=42.94 Aligned_cols=214 Identities=21% Similarity=0.246 Sum_probs=120.2
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHh---hHHHHHH----HHHHhh
Q 039269 99 PSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSEN---CKENMQQ----AVLNEK 171 (439)
Q Consensus 99 P~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk---~ke~lqQ----Avl~ER 171 (439)
|+-+=|+|+-+-.-+ .+...|.++ |+.+.+--+-...|-+||..+|+.-..+ ++.+++| -+++++
T Consensus 672 ~L~~l~~l~~~~~~~----~~~q~el~~----le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~ 743 (1174)
T KOG0933|consen 672 LLRQLQKLKQAQKEL----RAIQKELEA----LERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDL 743 (1174)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHH
Confidence 566778887664432 222333333 2333333444566777777777654432 1222222 122222
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHH----HHHHHHHHHHHHHHHHHHH----hhhhhhhhc
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQE----NEMLLQELEVVREQLENLH----KQHEESEVK 243 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e----~~~l~qEL~~~r~~le~L~----k~~~ElEak 243 (439)
-.|-=+++|+....-+.+..++.+++.-...|..+....++ ...+..||..+++.++.-+ +++.++|.
T Consensus 744 ---~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~- 819 (1174)
T KOG0933|consen 744 ---KELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYER- 819 (1174)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 23344677777777777777888877776776666555443 3344555555544444332 22222221
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc--cccccc
Q 039269 244 SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECS--VNFLSE 321 (439)
Q Consensus 244 skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn--~~~l~e 321 (439)
-..+.-.|-+|.+++..++..+....+.+-.+-..++.-+.. +.--..+.+.++....+++..|+ ++.+.-
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~-------~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~ 892 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK-------VEKDVKKAQAELKDQKAKQRDIDTEISGLLT 892 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhHHHHHHHHHHHHHHHHHhhhHHHhhhhh
Confidence 234555666777777777777776666666666666655543 44556778888899999999999 444444
Q ss_pred ccccceecCC
Q 039269 322 EEDKLTVDTS 331 (439)
Q Consensus 322 e~d~l~vd~S 331 (439)
...++.-..+
T Consensus 893 ~~e~~~~e~~ 902 (1174)
T KOG0933|consen 893 SQEKCLSEKS 902 (1174)
T ss_pred HHHHHHHHhh
Confidence 4444433333
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.73 E-value=3.9 Score=40.95 Aligned_cols=169 Identities=17% Similarity=0.206 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHH--HHHHHHHHhhhh---hhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhcc
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQE--VAVRQFLTTKVK---DLEVELETTSENCKENMQQAVLNEKERFTQMQWD 180 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE--~AVk~fL~tKVk---DLEveLettkqk~ke~lqQAvl~EREr~tqmQWd 180 (439)
..-+...|.+++...+.=.+++-+..+.. .-+|+|.+.--. -+...+...|.-||- .-+-+-..|.
T Consensus 73 y~~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~r~~m~~q~~~vK~~aRl---------~aK~~WYeWR 143 (325)
T PF08317_consen 73 YQFSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDMRLLMDNQFQLVKTYARL---------EAKKMWYEWR 143 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 34567788888888877666666665443 268899764211 123333344433332 1223345677
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
|.=+.-=...++.++...+.+........+-+..-...+....+.++.++..|++...+++.-.+.+..-|-.|+..+..
T Consensus 144 ~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~ 223 (325)
T PF08317_consen 144 MQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKE 223 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHH
Confidence 77777777788888888888888888888888888888888888888888888888888887777666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L 283 (439)
....+++++.+.-.++..++.-+
T Consensus 224 ~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 224 EIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555554443
No 42
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.64 E-value=1.1 Score=42.50 Aligned_cols=95 Identities=26% Similarity=0.310 Sum_probs=69.5
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------ccccc
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV------KSKTD 247 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa------kskad 247 (439)
|..|-=+|.++|++....+.-+... ..||..|.+-|..+++.++.|+++....+- .+|+-
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei--------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~r 94 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEI--------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKAR 94 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777666666555555 677777777777777777777666555442 46778
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGV 282 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~ 282 (439)
.+++-++++.|+-.+..|.+...+.-.|+.++.+-
T Consensus 95 l~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 95 LKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988887643
No 43
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=7.8 Score=44.62 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 164 QQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 164 qQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
|--|+-+.++-+|+|-.++-|--|.++++-+|+--.-+.+-.....+++....+-...|++.++.++.
T Consensus 429 qe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarik 496 (1118)
T KOG1029|consen 429 QEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIK 496 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33455566677777777777777777777777666555555555555555555554444444443333
No 44
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=93.48 E-value=7.5 Score=41.96 Aligned_cols=136 Identities=20% Similarity=0.358 Sum_probs=77.9
Q ss_pred HHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhh
Q 039269 118 TAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKY 197 (439)
Q Consensus 118 ~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks 197 (439)
...+...+.+..+|.+.-+-...+......|+..|+..++...|.++.---. +++++. ..+.|=.+.++
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~-~~~L~~---~F~~LA~~ile------- 124 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINS-EQRLSE---QFENLANRIFE------- 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHH-------
Confidence 3344444555555555555556666666666666666666665544332222 444443 22222222221
Q ss_pred HHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 198 EQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 198 ~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
+..+.-.+... +.|..=|.=++++++.+.++.++++.+...+.--|..+||+|...+..|.+|-..+
T Consensus 125 -~k~~~f~~~~~-------~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nL 191 (475)
T PRK10361 125 -HSNRRVDEQNR-------QSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINL 191 (475)
T ss_pred -HHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 22233345568888888888888888888888899999999999887777765443
No 45
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.32 E-value=0.79 Score=37.33 Aligned_cols=66 Identities=26% Similarity=0.331 Sum_probs=56.5
Q ss_pred HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 163 MQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 163 lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
|++.|..=|+|+++ +.+|+.-++..+|....++.....+...+..++..|..|+++++++++.+..
T Consensus 3 Lea~~~~Lr~rLd~-------~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 3 LEAEIATLRNRLDS-------LTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55556655777777 9999999999999999999999999999999999999999999998776643
No 46
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.26 E-value=14 Score=39.69 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=68.5
Q ss_pred hHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHH---HhhhhhhhhhccHHHHHHHHHHHHHhhhhHHh
Q 039269 124 TEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVL---NEKERFTQMQWDMEELRKQLLETELKLKYEQD 200 (439)
Q Consensus 124 mEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl---~EREr~tqmQWdmeElr~k~~e~E~~Lks~qd 200 (439)
-+.-+-+||.++....-|-.|+...-.++...+...+.....-+- .++..++.++=.+.-+...+.++..+|..-.+
T Consensus 223 ae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~ 302 (522)
T PF05701_consen 223 AEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKE 302 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677776555544444443333333333322222221111 34667777777777788888888888888888
Q ss_pred hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 201 ERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 201 ek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
+-........|+..|.+....++..+++......
T Consensus 303 E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~ 336 (522)
T PF05701_consen 303 EASSLRASVESLRSELEKEKEELERLKEREKEAS 336 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887777777777766555443
No 47
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.14 E-value=7.1 Score=40.24 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=105.3
Q ss_pred echhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhh
Q 039269 98 LPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQM 177 (439)
Q Consensus 98 lP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqm 177 (439)
.|...-..|-.+|.-...+--.-+++.++|-.||+-.--==..|-.++.+..+.....-.. .-. .|||.+-.
T Consensus 62 ~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~--~~~-----~ere~lV~- 133 (319)
T PF09789_consen 62 PPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR--HFP-----HEREDLVE- 133 (319)
T ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc--ccc-----hHHHHHHH-
Confidence 3444556777777777777777778888887777654333346777777777766544322 111 77877654
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh---ccccchhHHHHH
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV---KSKTDVKLLVKE 254 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa---kskad~KvLvKE 254 (439)
.+|.++.++.++|..+++. .-|++.+..|-|+-+..++-|..++.-+=. ..-.|+--|+=|
T Consensus 134 --qLEk~~~q~~qLe~d~qs~--------------lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~E 197 (319)
T PF09789_consen 134 --QLEKLREQIEQLERDLQSL--------------LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIME 197 (319)
T ss_pred --HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Confidence 5799999999999999999 777888888888888888888777654321 123455555555
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
-|= |+..+.+.-.|+.-+...|.+=|
T Consensus 198 NRy-------L~erl~q~qeE~~l~k~~i~KYK 223 (319)
T PF09789_consen 198 NRY-------LKERLKQLQEEKELLKQTINKYK 223 (319)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 44555555555555555555544
No 48
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.08 E-value=22 Score=41.65 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHH-HHHHhhhhhhHHHHHHhhHhhH
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVR-QFLTTKVKDLEVELETTSENCK 160 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk-~fL~tKVkDLEveLettkqk~k 160 (439)
.+...-+...+..+...+.+...+-.+++++..-+ .-+..++.+|+.++....+.-+
T Consensus 645 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~ 702 (1201)
T PF12128_consen 645 TQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELE 702 (1201)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667788888889999999999888765 6888888888888877665433
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.90 E-value=2.3 Score=43.78 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHH--------------HHHHHHHhhhhhhhhccccchh
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVR--------------EQLENLHKQHEESEVKSKTDVK 249 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r--------------~~le~L~k~~~ElEakskad~K 249 (439)
++.++.+.|..++.....=+..-+....+..+.+.+.+.+...- .....|...+.+++ ++.+
T Consensus 252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~ 327 (498)
T TIGR03007 252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAE----AEIA 327 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHH----HHHH
Confidence 44445555555544433333333444445555555555543321 11222333333322 2444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~ 272 (439)
.|-.++++|+....++++++.++
T Consensus 328 ~l~~~~~~l~~~~~~~~~~~~~~ 350 (498)
T TIGR03007 328 SLEARVAELTARIERLESLLRTI 350 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555555555555555555443
No 50
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.58 E-value=11 Score=37.01 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccc
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL-QKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLS 320 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L-~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ 320 (439)
.-+-.++.++++...+++.++.++-.+......-. ....+...........+-.....++.+|..|.+.=|+
T Consensus 206 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP~ 278 (423)
T TIGR01843 206 AEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSPV 278 (423)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECCC
Confidence 33444455555555555555444433333222211 1122233444555566667778888889988776663
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.41 E-value=12 Score=37.14 Aligned_cols=154 Identities=21% Similarity=0.306 Sum_probs=91.4
Q ss_pred hhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 039269 146 KDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEV 225 (439)
Q Consensus 146 kDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~ 225 (439)
+.+..++++. .+..+++++++-+=..-+.+.+-++.++|.+.--.|.++...-+.+-. ....+|.+.+.+.+..
T Consensus 34 ~k~~~e~e~~-~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~-----~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 34 KKAKAELEAL-NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDEREL-----RALNIEIQIAKERINS 107 (239)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-----HHHHHHHHHHHHHHHH
Confidence 3444555443 345566666666656666677777777777777777777444322221 1223344444444444
Q ss_pred HHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 039269 226 VREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECE 305 (439)
Q Consensus 226 ~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~ 305 (439)
+..++..|..++.+++ ..++.|...+..++.+..+.++.++..+....+.=..+. .++.+.......+++.+..
T Consensus 108 le~el~~l~~~~~~l~----~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~--~~~~~L~~~l~~ell~~ye 181 (239)
T COG1579 108 LEDELAELMEEIEKLE----KEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELS--SKREELKEKLDPELLSEYE 181 (239)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCHHHHHHHH
Confidence 4444444444444443 456677777888888888888888888777766333332 3344555666778888877
Q ss_pred HHHHHh
Q 039269 306 ILRNRL 311 (439)
Q Consensus 306 iLr~RL 311 (439)
-+++-=
T Consensus 182 ri~~~~ 187 (239)
T COG1579 182 RIRKNK 187 (239)
T ss_pred HHHhcC
Confidence 777644
No 52
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.05 E-value=33 Score=41.11 Aligned_cols=195 Identities=27% Similarity=0.330 Sum_probs=106.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhchHHHHHHhhH----HHHHH---HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhh
Q 039269 102 QRLKLNRVLNNMQQRLTAAKADTEDLLARLNQ----EVAVR---QFLTTKVKDLEVELETTSENCKENMQQAVLNEKERF 174 (439)
Q Consensus 102 qR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQ----E~AVk---~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~ 174 (439)
.-.|..++=.+++.|..-+|-..+++-.++++ .+.++ .+++.|.+.||.+++..+.+ +..+.-|.-.=|..+
T Consensus 364 ~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~-~~e~e~~pe~~~~~i 442 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRK-KSELEKAPEKARIEI 442 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHhCchhhHhHH
Confidence 34455566666777777777777777777664 33343 47899999999999988754 566777776667777
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHH-----------hhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------Hhh
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQ-----------DERARAESSKMSIIQENEMLLQELEVVREQLENL-------HKQ 236 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~q-----------dek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L-------~k~ 236 (439)
..+|-..+.|-....--+..|...+ .+....+.++.....+....+-|++..+-+|+.| .+.
T Consensus 443 ~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~ 522 (1293)
T KOG0996|consen 443 QKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKK 522 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777766554444333333221 2222333333344444444444444444444444 344
Q ss_pred hhhhhhc---cccchhHHHHHHHHHhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 237 HEESEVK---SKTDVKLLVKEVKSLRSSQSEVKQELSR-------LMKEKLEVEGVLQKEKQRMEHADIAN 297 (439)
Q Consensus 237 ~~ElEak---skad~KvLvKEVKsLR~sq~elkqEl~~-------~~~eK~elE~~L~~Ekq~~e~~~~ar 297 (439)
++++..+ +.+..+-..-+|-+|......+|+|+.+ ..++-..+-..+++=+|+.+.++.+.
T Consensus 523 ~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~ 593 (1293)
T KOG0996|consen 523 VEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSL 593 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444332 2233333444444444445444444444 33344444444445555555555433
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=91.97 E-value=4.3 Score=34.00 Aligned_cols=95 Identities=26% Similarity=0.301 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
|+.-+|.....+..+++... .....=........+.-.+..+++.+|.+-..++++...+-.+. .+..-|..|+|.|+
T Consensus 3 Dik~ir~n~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~-~~~~~l~~e~~~lk 80 (108)
T PF02403_consen 3 DIKLIRENPEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG-EDAEELKAEVKELK 80 (108)
T ss_dssp SHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT-CCTHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 55667777777777776553 22223334455667777788888888888888888877765544 77888888888888
Q ss_pred hhhHHHHHHHHHHHHHH
Q 039269 260 SSQSEVKQELSRLMKEK 276 (439)
Q Consensus 260 ~sq~elkqEl~~~~~eK 276 (439)
....++..++..+-.+.
T Consensus 81 ~~i~~le~~~~~~e~~l 97 (108)
T PF02403_consen 81 EEIKELEEQLKELEEEL 97 (108)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777665543
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.88 E-value=18 Score=42.58 Aligned_cols=61 Identities=25% Similarity=0.335 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039269 215 ENEMLLQELEVVREQL-ENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 215 e~~~l~qEL~~~r~~l-e~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~el 279 (439)
+.+.+...+...++++ ..+..+..+.|- .++-|.+||..|......|++|+...+++-.+.
T Consensus 373 ~~d~l~k~I~~~~~~~~~~~~~~~~e~e~----k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 373 EVDRLEKQIADLEKQTNNELGSELEEREN----KLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444 344444444443 356677777777777777777776666554433
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=91.85 E-value=13 Score=37.04 Aligned_cols=120 Identities=27% Similarity=0.384 Sum_probs=75.3
Q ss_pred HHhhhhhhHHHHHHhhHhhH--HHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHH
Q 039269 141 LTTKVKDLEVELETTSENCK--ENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEM 218 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~k--e~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~ 218 (439)
|-+.|..+|.++..++.+-+ +..+-||-++|| +..++-+|.-+ +......+.....+..+.+.
T Consensus 57 le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e-~~aL~~E~~~a--------------k~r~~~le~el~~l~~~~~~ 121 (239)
T COG1579 57 LENQVSQLESEIQEIRERIKRAEEKLSAVKDERE-LRALNIEIQIA--------------KERINSLEDELAELMEEIEK 121 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 35566777777766655433 233355555544 23322222222 23333334444455677777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 219 LLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 219 l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
+..++...+..+..+.+...+.++.....++.+=++...+...-.+|+.++..-+-.
T Consensus 122 l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~ 178 (239)
T COG1579 122 LEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLS 178 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 788888888888888888888888888888887777888877777777777665443
No 56
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.78 E-value=27 Score=39.54 Aligned_cols=262 Identities=26% Similarity=0.279 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHH-----HhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhcc-HH
Q 039269 109 VLNNMQQRLTAAKADTEDLLARLNQEVAVRQFL-----TTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWD-ME 182 (439)
Q Consensus 109 vl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL-----~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWd-me 182 (439)
.+...++++...+.....+-.++.+-..-.+.+ -..+++.+.+|..-+.+.. .|+++.+ .=|+ ++
T Consensus 587 ~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~e~~~~~~~l~~~~~~l~---~~~~~~~------~~~~~l~ 657 (908)
T COG0419 587 ELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN---LQAELEE------LLQAALE 657 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---hHHHHHH------HHHHHHH
Confidence 444555666666666666666666555555544 3334444555554444444 2233332 1222 77
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq 262 (439)
++..+..+++..+..+ ......+............+..++.+++..++.+.++...++ -++.++++.+..+
T Consensus 658 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~--------~~~~~l~~~~~~~ 728 (908)
T COG0419 658 ELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIE--------QLIEELESRKAEL 728 (908)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence 7888877777777641 111111111112222255577777777777777777777633 5677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHhhhhccccc---cccccc--ceec--CC
Q 039269 263 SEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLL----HECEILRNRLQECSVNFL---SEEEDK--LTVD--TS 331 (439)
Q Consensus 263 ~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~Kll----hEc~iLr~RLQECn~~~l---~ee~d~--l~vd--~S 331 (439)
..+++++...-+....+..+-..=.... .....+..++ ++......++..-.+... ...+++ ..++ ..
T Consensus 729 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (908)
T COG0419 729 EELKKELEKLEKALELLEELREKLGKAG-LRADILRNLLAQIEAEANEILSKLSLNRYDLRRLTIRKDGNGGLVVVVYDG 807 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccccceEEEEecC
Confidence 7777777777666666665555544443 3444444444 444444444444333332 122222 1222 11
Q ss_pred CCcchhhhhhccch---hHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHh
Q 039269 332 SPSDAVDLLTTSDN---RIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFID 395 (439)
Q Consensus 332 s~sDAldLLaTSDn---RI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiD 395 (439)
.+..+..-|+.-.. -|++=||=+..+.... .-..-.-+++...=|.|.+.-|+++|..
T Consensus 808 ~~~r~~~~LSGGE~~~~sLalrLALs~~~~~~~------~l~~l~LDEpf~~LD~e~l~~l~~~l~~ 868 (908)
T COG0419 808 GEVRPIKTLSGGERFLASLALRLALSDLLQGRA------RLELLFLDEPFGTLDEERLEKLAEILEE 868 (908)
T ss_pred CCccccccCCchHHHHHHHHHHHHHHHHHhccc------CCCeeEeeCCCCCCCHHHHHHHHHHHHH
Confidence 12345555544433 2455566666664442 0123344555556788999999998764
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.70 E-value=10 Score=38.56 Aligned_cols=194 Identities=12% Similarity=0.149 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHH--HHHHHHHh--hhhh-hHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhcc
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEV--AVRQFLTT--KVKD-LEVELETTSENCKENMQQAVLNEKERFTQMQWD 180 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~--AVk~fL~t--KVkD-LEveLettkqk~ke~lqQAvl~EREr~tqmQWd 180 (439)
....-.-|.+++..-+-=..++-+..+.+. =.++|.+. .+|. +...+...|+-+| -.-.++| ..|-
T Consensus 68 Y~~sC~EL~~~I~egr~~~~~~E~et~~~nPpLF~EY~~a~~d~r~lm~~Qf~lvK~~aR-l~ak~~W--------YeWR 138 (312)
T smart00787 68 YQFSCKELKKYISEGRDLFKEIEEETLINNPPLFKEYFSASPDVKLLMDKQFQLVKTFAR-LEAKKMW--------YEWR 138 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHH
Confidence 344566777888777764444444444332 35788753 2221 1222333333322 1223344 3566
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
|-=+.-=...++.++...+.+........+-+..-...+++-.+.++.++..|++..++++.-...+.+-+-.+++.+-.
T Consensus 139 ~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ 218 (312)
T smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQ 218 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 65555555566777777777777777777777777788888888889999999999999888776666666666666666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECS 315 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn 315 (439)
.++..++++.+.-.+..+++..|..-. .-...+..+++-+...+.+|.
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~-------~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLT-------NKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666666655555554333 333445555555555555554
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.65 E-value=22 Score=38.31 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=37.5
Q ss_pred hhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHH
Q 039269 120 AKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQA 166 (439)
Q Consensus 120 aKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQA 166 (439)
.+...++|-.-|..|+..+.|.......++.-|..++..+++.....
T Consensus 287 i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 287 IQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888999999999999999999999888877655443
No 59
>PLN02939 transferase, transferring glycosyl groups
Probab=91.38 E-value=3.3 Score=48.05 Aligned_cols=144 Identities=19% Similarity=0.288 Sum_probs=108.2
Q ss_pred eeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhh
Q 039269 95 LLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERF 174 (439)
Q Consensus 95 ~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~ 174 (439)
.++.-..+|.-|.--+.-|+.||..|++|+-.|..+=.- -+..||..|+.-|+.+. ...+||++. +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~----~ 323 (977)
T PLN02939 258 RVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYD------CWWEKVENLQDLLDRAT----NQVEKAALV----L 323 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHH------HHHHHHHHHHHHHHHHH----HHHHHHHHH----h
Confidence 344445677778888888999999999999888765322 29999999999998654 345678776 3
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKE 254 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKE 254 (439)
.| -.+||.|.-.+|..|+.---.|.+.+ -++-.|++++.+..++.+-.++..+.+.+--.+
T Consensus 324 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (977)
T PLN02939 324 DQ----NQDLRDKVDKLEASLKEANVSKFSSY---------------KVELLQQKLKLLEERLQASDHEIHSYIQLYQES 384 (977)
T ss_pred cc----chHHHHHHHHHHHHHHHhhHhhhhHH---------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33 24799999999999987644443222 224457788888888888888889999999999
Q ss_pred HHHHhhhhHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSR 271 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~ 271 (439)
|+-++.+...|+.|-..
T Consensus 385 ~~~~~~~~~~~~~~~~~ 401 (977)
T PLN02939 385 IKEFQDTLSKLKEESKK 401 (977)
T ss_pred HHHHHHHHHHHHhhhhc
Confidence 99999998888877543
No 60
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.35 E-value=7.7 Score=35.67 Aligned_cols=87 Identities=29% Similarity=0.373 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHH---hhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhh
Q 039269 136 AVRQFLTTKVKDLEVELETTSENCKENMQQAVLN---EKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSI 212 (439)
Q Consensus 136 AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~---EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~ 212 (439)
.=++.|-.+|--||.+|+.... +.+.||++ -+.-+.-|+=.++.+......++..|.+.
T Consensus 17 ~e~dsle~~v~~LEreLe~~q~----~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l-------------- 78 (140)
T PF10473_consen 17 SEKDSLEDHVESLERELEMSQE----NKECLILDAENSKAEIETLEEELEELTSELNQLELELDTL-------------- 78 (140)
T ss_pred HhHhhHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3357788899999999987644 33333332 23334444444555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
..|++.|-++|...+.++..|......+
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~~ 106 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESLNSSL 106 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 7777888777777777777776555443
No 61
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=90.64 E-value=7.5 Score=41.67 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 039269 218 MLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVK----QELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 218 ~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elk----qEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
...|+|..+.+|..+|+.+...|- ++..-|.-+--||-+|+.+|. |-.++-..=|..-++|=|+++.-
T Consensus 134 kAqQ~lar~t~Q~q~lqtrl~~l~----~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~l 205 (499)
T COG4372 134 KAQQELARLTKQAQDLQTRLKTLA----EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNL 205 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333322 233344445556666666666 23334444455556666666543
No 62
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=90.46 E-value=41 Score=39.29 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHH------HhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHH--HHhhh------
Q 039269 107 NRVLNNMQQRLTAAKADTEDLLA------RLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAV--LNEKE------ 172 (439)
Q Consensus 107 nRvl~Tmq~Rl~taKTDmEDLia------RLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAv--l~ERE------ 172 (439)
-+.+.--++++.+.+.-+.++-. |++|+-.+-+= ++++....|..+++-+ ++|. ..|-|
T Consensus 350 ~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e---qLr~elaql~a~r~q~----eka~~~~ee~e~~~l~~ 422 (980)
T KOG0980|consen 350 ENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE---QLRNELAQLLASRTQL----EKAQVLVEEAENKALAA 422 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHH
Confidence 34455556777777777777754 44444444332 6677777776665443 3333 23332
Q ss_pred --hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc----
Q 039269 173 --RFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT---- 246 (439)
Q Consensus 173 --r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska---- 246 (439)
|+.-|-=-..+||..-.+|=.|..-.+--....+.+.. .+.++...+.++||.++.+.+.+|+|...
T Consensus 423 e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~-------~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~ 495 (980)
T KOG0980|consen 423 ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSID-------DVEEENTNLNDQLEELQRAAGRAETKTESQAKA 495 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 22222222333444444433333333222222222222 33333334444555555544444444333
Q ss_pred -------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039269 247 -------------DVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 247 -------------d~KvLvKEVKsLR~sq~elkqEl~~~~~eK~el 279 (439)
+++.|-..+++++.++.....++...+++|--+
T Consensus 496 le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~ 541 (980)
T KOG0980|consen 496 LESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRL 541 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 345566677888888888888999888888544
No 63
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.42 E-value=30 Score=37.69 Aligned_cols=98 Identities=22% Similarity=0.239 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH----------HHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM----------KEKLEVEGV 282 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~----------~eK~elE~~ 282 (439)
.++...+..+++.++..++.+.+++...=.....++.-|-++++.++....+.++.+.++. .-...+...
T Consensus 229 ~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p~~l~~~ll~~~~~q 308 (650)
T TIGR03185 229 AQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQ 308 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHhhhHHHHHHHHHH
Confidence 3333444444444444444444433333233334455666677777777777777776655 233455666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 039269 283 LQKEKQRMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 283 L~~Ekq~~e~~~~ar~KllhEc~iLr~RL 311 (439)
+..|++.. +.......|.+--.-|+.++
T Consensus 309 ~~~e~~~~-~~~~~~~~l~~~~~~i~~~~ 336 (650)
T TIGR03185 309 LQKEEQSQ-QNQLTQEELEERDKELLESL 336 (650)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66666433 34434333334333344444
No 64
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.33 E-value=36 Score=38.37 Aligned_cols=209 Identities=22% Similarity=0.280 Sum_probs=139.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHH----HHHHHh---hhhhhHH---HHHHhhHhhHHHHHHHHHH
Q 039269 100 SDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAV----RQFLTT---KVKDLEV---ELETTSENCKENMQQAVLN 169 (439)
Q Consensus 100 ~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AV----k~fL~t---KVkDLEv---eLettkqk~ke~lqQAvl~ 169 (439)
.|...+|-+=+..|+.-|...+.--+||=..|++...- |.=|.- +-..|+- +|.+.||+-|.+|+++
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L--- 493 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL--- 493 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45667888888888888888888888888887654443 322222 2222332 3334445555444443
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 170 EKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKM---------------SIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 170 EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~---------------s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
||- +-|.|++-.+.|..|..++-.+...+.+-+ +..+....|..|+..+|-++....
T Consensus 494 Ekr--------L~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~ke 565 (697)
T PF09726_consen 494 EKR--------LAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELKKLRRELKQKE 565 (697)
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 556888888999999888766554433211 122233334444444444444433
Q ss_pred hhhhhhhhc----------cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 039269 235 KQHEESEVK----------SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHEC 304 (439)
Q Consensus 235 k~~~ElEak----------skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc 304 (439)
.+...+|.. +..|.-+|.-.+-.|+--..+|+.-|+.-=+-|.+|=..|-.=|...|-+....++-=.||
T Consensus 566 e~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei 645 (697)
T PF09726_consen 566 EQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEI 645 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333321 3567888888888998888889999998888999999999998888888888888888999
Q ss_pred HHHHHHhhhhccccc
Q 039269 305 EILRNRLQECSVNFL 319 (439)
Q Consensus 305 ~iLr~RLQECn~~~l 319 (439)
.-|..++-+--.-.|
T Consensus 646 ~~lk~ki~~~~av~p 660 (697)
T PF09726_consen 646 EELKAKIAQLLAVMP 660 (697)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999988665555
No 65
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.11 E-value=44 Score=39.70 Aligned_cols=228 Identities=20% Similarity=0.215 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHH
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQ 187 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k 187 (439)
|.++|++.+-.+ +.|.+|..----.--+.-|..|+++||..+-...+ .-++
T Consensus 383 rlt~tleelqss---s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~q--------------------------q~~e 433 (1195)
T KOG4643|consen 383 RLTGTLEELQSS---SYEELISKHLELEKEHKNLSKKHEILEERINQLLQ--------------------------QLAE 433 (1195)
T ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHH--------------------------HHHH
Confidence 566777777665 78888775443333444566666666655433222 3344
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHH
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQ 267 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkq 267 (439)
|...+-+|+.+.+.=...-.+.+....+...+..+++++-.-.+-+.+++.|+ +++ +|.|-.+...-.+
T Consensus 434 led~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el----------~~~-iknlnk~L~~r~~ 502 (1195)
T KOG4643|consen 434 LEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEEL----------LNQ-IKNLNKSLNNRDL 502 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHHHHHHHH
Confidence 55555566555444444444444455555556666666554444444555443 333 5566666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhH
Q 039269 268 ELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRI 347 (439)
Q Consensus 268 El~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI 347 (439)
|+++....|.+++.=++..- +.-.++=.-|..|.+++- +-..+=
T Consensus 503 elsrl~a~~~elkeQ~kt~~-------~qye~~~~k~eeLe~~l~-----------------------------~lE~EN 546 (1195)
T KOG4643|consen 503 ELSRLHALKNELKEQYKTCD-------IQYELLSNKLEELEELLG-----------------------------NLEEEN 546 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh-----------------------------hHHHHH
Confidence 77777777777666555443 333444445555555431 112233
Q ss_pred HHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHH-------------------HHHHHHhhHHHHHHHHHHHH
Q 039269 348 GLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQM-------------------LTDIFIDNARLRMQVNTVIR 408 (439)
Q Consensus 348 ~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKm-------------------LaDlfiDNA~LRkqvNSv~R 408 (439)
++||.++|.|-.. .+.....+.+.+..+ .-+.|++|| =--+|.|+.-+|+-|+.+.|
T Consensus 547 a~LlkqI~~Lk~t-~qn~~~LEq~~n~lE---~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~ 622 (1195)
T KOG4643|consen 547 AHLLKQIQSLKTT-SQNGALLEQNNNDLE---LIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRR 622 (1195)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHH
Confidence 5566677777654 232222222222211 123333333 34567788888888887666
Q ss_pred HHHhcCCc
Q 039269 409 CALNTYVK 416 (439)
Q Consensus 409 ~Al~~~~~ 416 (439)
. +..-.+
T Consensus 623 ~-~~kll~ 629 (1195)
T KOG4643|consen 623 K-ESKLLK 629 (1195)
T ss_pred H-HHhhcc
Confidence 5 444333
No 66
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.10 E-value=13 Score=32.85 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhh--ccccchhHHHHHHHHHhhhhHHHHH
Q 039269 191 TELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLEN-LHKQHEESEV--KSKTDVKLLVKEVKSLRSSQSEVKQ 267 (439)
Q Consensus 191 ~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~-L~k~~~ElEa--kskad~KvLvKEVKsLR~sq~elkq 267 (439)
++..++.........+....++..+.+....-...+++.+|. |.+|-..++. +.|++..-+-.++..|+.+-...+.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444444444432 2222222221 2233333344445555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 268 ELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 268 El~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
.|...-..|.+-+..|..|....+ .-...|-+-=.+||++|+.
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~---~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELE---QRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhh
Confidence 555555555555555555543222 2233444555677777653
No 67
>PRK03918 chromosome segregation protein; Provisional
Probab=89.60 E-value=37 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=14.7
Q ss_pred CCCCCccHHHHHHHHHHHHHhh
Q 039269 375 NGSDRRSDDELRQMLTDIFIDN 396 (439)
Q Consensus 375 ~~~~~~tddElRKmLaDlfiDN 396 (439)
++...+-|..-+..|.++|...
T Consensus 819 DEp~~~lD~~~~~~l~~~l~~~ 840 (880)
T PRK03918 819 DEPTPFLDEERRRKLVDIMERY 840 (880)
T ss_pred eCCCcccCHHHHHHHHHHHHHH
Confidence 3344456778888888877553
No 68
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.50 E-value=13 Score=33.81 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=82.7
Q ss_pred HHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHH
Q 039269 140 FLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEML 219 (439)
Q Consensus 140 fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l 219 (439)
-|..|+..=..||-..+.++...+|..--. ||....+.+++..++..+...+..+... ..+...+
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~-keKl~~~~~~~~~l~~~l~~~~~~~~~~--------------r~~l~~~ 117 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHV-KEKLHFLSEELERLKQELKDREEELAKL--------------REELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHH
Confidence 367788888899999999999999776666 9999998888888888888877777776 5666666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccc-chhHHHHHHHHHhhhhHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKT-DVKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakska-d~KvLvKEVKsLR~sq~elkqE 268 (439)
..+.+.++.....|..+.+-+..-+=- |.--.+.+|..||.+...++..
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk 167 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRKEIKELERK 167 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777766554443 4444555555555555444443
No 69
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=89.18 E-value=8.4 Score=29.49 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=72.9
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVK 253 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvK 253 (439)
+-+++-++++|-.-+.++|..|.+..- +..-........+...+..++...+..++.+......|....-.+...+-+
T Consensus 3 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~--~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~~~~~~~i~~ 80 (105)
T PF00435_consen 3 LQQFQQEADELLDWLQETEAKLSSSEP--GSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSGPEDSDEIQE 80 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCTH--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 345566888888889999999955433 444455666777889999999999999999999999996665677777777
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 039269 254 EVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~ 272 (439)
.+..|...-..|...+...
T Consensus 81 ~~~~l~~~w~~l~~~~~~r 99 (105)
T PF00435_consen 81 KLEELNQRWEALCELVEER 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777776666555443
No 70
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.07 E-value=30 Score=40.89 Aligned_cols=104 Identities=21% Similarity=0.272 Sum_probs=67.6
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhh-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHH-
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDER-ARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLL- 251 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek-~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvL- 251 (439)
+.-.+=+|..++.....+|-.+-..+..- ....+.......+.++|.+|.+.++.++..|..++.++--+.+.+-+-+
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~ 439 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKE 439 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444444445555554444443333 4445556666777778888888888888888888888777777666655
Q ss_pred -H-HHHHHHhhhhHHHHHHHHHHHHHHH
Q 039269 252 -V-KEVKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 252 -v-KEVKsLR~sq~elkqEl~~~~~eK~ 277 (439)
+ .++..||+++.....+|..+-+-|+
T Consensus 440 ~i~~~i~~l~k~i~~~~~~l~~lk~~k~ 467 (1074)
T KOG0250|consen 440 HIEGEILQLRKKIENISEELKDLKKTKT 467 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 6788888888888877776655543
No 71
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.06 E-value=56 Score=38.85 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=102.7
Q ss_pred HHHHHHHhhhchHHHHHHhhHHH-----HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhh---------h-hhhhh
Q 039269 113 MQQRLTAAKADTEDLLARLNQEV-----AVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEK---------E-RFTQM 177 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~-----AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~ER---------E-r~tqm 177 (439)
|++-|....-++-=+..|++|-. +-.+-+-.-|++++.++.++...-|+..+--...|+ | |+.-+
T Consensus 713 l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl 792 (1174)
T KOG0933|consen 713 LKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDL 792 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHH
Confidence 44555555556666677777643 222334456888888888887776665544434443 2 23334
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc---chhHHHHH
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT---DVKLLVKE 254 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska---d~KvLvKE 254 (439)
+-.+...-++..+..-.++..+++.-...-+-+....+..++.++|.....+.++|..+.+.++|+..+ |.+-+-.|
T Consensus 793 ~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~e 872 (1174)
T KOG0933|consen 793 EKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAE 872 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHH
Confidence 444444555555555555555566556666666666666677777777777777777788888877654 55666677
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEK 276 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK 276 (439)
|+-..+-+++.-.+++..++.+
T Consensus 873 l~~~k~k~~~~dt~i~~~~~~~ 894 (1174)
T KOG0933|consen 873 LKDQKAKQRDIDTEISGLLTSQ 894 (1174)
T ss_pred HHHHHHHHHhhhHHHhhhhhHH
Confidence 7777777777777776665543
No 72
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.03 E-value=35 Score=37.72 Aligned_cols=89 Identities=26% Similarity=0.290 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVK---SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEak---skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
....+...+++...++.+.+....+.++||+ .|+.+|.|.-|++-||.+...|..+|.. +.+.|..|.-.
T Consensus 126 r~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~-------~r~~ld~Etll 198 (546)
T KOG0977|consen 126 RKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELAR-------ARKQLDDETLL 198 (546)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-------HHHHHHHHHHH
Confidence 3333334444444455555555556666654 4566666666666666666555544444 34444444322
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 039269 290 MEHADIANLKLLHECEILR 308 (439)
Q Consensus 290 ~e~~~~ar~KllhEc~iLr 308 (439)
.-...+.-..|++||..+.
T Consensus 199 r~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 199 RVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 2333444445555555443
No 73
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.00 E-value=57 Score=38.79 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=62.5
Q ss_pred HHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHH
Q 039269 113 MQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETE 192 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E 192 (439)
+..--.++--.-++++.+|++..+--+=|-++++.||..|.+.+. - .||+=..|-+.+ .+-.-+|
T Consensus 242 le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~-e---keq~~a~~t~~~-----------k~kt~le 306 (1200)
T KOG0964|consen 242 LEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE-E---KEQLKARETKIS-----------KKKTKLE 306 (1200)
T ss_pred HHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-H---HHHHHHHHHHHH-----------HHhhhhh
Confidence 333333444455789999999999999999999999999988765 3 344333322221 2334455
Q ss_pred HhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 193 LKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 193 ~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
++.+..|+.-+..+.......+.++.+..++...++.|.
T Consensus 307 l~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~ 345 (1200)
T KOG0964|consen 307 LKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELS 345 (1200)
T ss_pred hhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 666666666555555555555555555444444433333
No 74
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=88.98 E-value=24 Score=35.95 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHH
Q 039269 112 NMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELET 154 (439)
Q Consensus 112 Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLet 154 (439)
.|.+++..-+.|-+=|...++..--+..=|..|...|..|+..
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~ 190 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQ 190 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554444444445555555554444
No 75
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=88.69 E-value=22 Score=33.59 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=27.6
Q ss_pred CCceeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHH
Q 039269 92 RNSLLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVA 136 (439)
Q Consensus 92 ~d~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~A 136 (439)
....++-|..-+++ |..++..|..++.+.+-|-++++..+.
T Consensus 8 ~~~~~~C~~C~~~~----L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 8 SRRRFYCANCVNNR----LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred CCCCeECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666665 666777777777777777777766554
No 76
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.58 E-value=30 Score=35.11 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=17.2
Q ss_pred HHHHHhhhhcccccccccccceecCCCCc
Q 039269 306 ILRNRLQECSVNFLSEEEDKLTVDTSSPS 334 (439)
Q Consensus 306 iLr~RLQECn~~~l~ee~d~l~vd~Ss~s 334 (439)
.|..|++|-.+..-....+--+||+-.++
T Consensus 360 ~ll~r~~e~~l~~~~~~~~~~Vi~~a~~P 388 (444)
T TIGR03017 360 AAMQRYTQTRIEAQSNQTDISILNPAVPP 388 (444)
T ss_pred HHHHHHHHHHHHhccCCCceEeeCCCCCC
Confidence 46677777776655555555556655443
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.57 E-value=41 Score=37.19 Aligned_cols=198 Identities=22% Similarity=0.263 Sum_probs=117.8
Q ss_pred HHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhH----------hhHHHHHHHHHHhhhhhhhhhccHHH
Q 039269 114 QQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSE----------NCKENMQQAVLNEKERFTQMQWDMEE 183 (439)
Q Consensus 114 q~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkq----------k~ke~lqQAvl~EREr~tqmQWdmeE 183 (439)
++....+.-+.-+...|||+-.|=-.++..+.+.||+++.-.+. .-|..+.|+++.=.+.-++.|==+++
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455566677778899999999999999999999999877665 44777888888766666777777777
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhccccchhH------------
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQH-EESEVKSKTDVKL------------ 250 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~-~ElEakskad~Kv------------ 250 (439)
|.-.....+..|..++.-. ..+.+..--..=.+.|.+-|..+|.+++.-.+.. +++|---+..+--
T Consensus 213 l~f~~~~h~~eI~e~~~~~-~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~ 291 (546)
T KOG0977|consen 213 LAFLKRIHKQEIEEERRKA-RRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQ 291 (546)
T ss_pred HHHHHhccHHHHHHHHHHH-hhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchh
Confidence 7777766666666553221 2222211111112334444455566666554332 2233222222211
Q ss_pred --HHHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHhh
Q 039269 251 --LVKEVKSLRSSQSEVKQELS-------RLMKEKLEVEGVLQKEKQRMEHADIANL----KLLHECEILRNRLQ 312 (439)
Q Consensus 251 --LvKEVKsLR~sq~elkqEl~-------~~~~eK~elE~~L~~Ekq~~e~~~~ar~----KllhEc~iLr~RLQ 312 (439)
.--||+++|.....|...|+ ...+.-.+|+..|-.++..-|.+-+-+. ++=.||..|-.-||
T Consensus 292 ~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i~~mReec~~l~~Elq 366 (546)
T KOG0977|consen 292 NYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEIAKMREECQQLSVELQ 366 (546)
T ss_pred HHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22567776666666655554 4556667777777777766666554443 44445555554444
No 78
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=88.47 E-value=17 Score=32.08 Aligned_cols=120 Identities=21% Similarity=0.263 Sum_probs=71.3
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH
Q 039269 143 TKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE 222 (439)
Q Consensus 143 tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE 222 (439)
.++..|+.++...+...... ...+..++=|++.....+.+.+.+...+----+..-.....+..+...+..+
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~--------~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~ 74 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDA--------EEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQE 74 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555444433 2344445555555666666666554444222233334445556666666666
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 223 LEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 223 L~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
+..++...+.....+++.++.-...++.|-+|+..+.....+|...=.
T Consensus 75 ~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~ 122 (132)
T PF07926_consen 75 INELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNK 122 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777777777777777777766665433
No 79
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.45 E-value=37 Score=37.78 Aligned_cols=135 Identities=19% Similarity=0.275 Sum_probs=87.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 100 SDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 100 ~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
.-|-+.|+-=|.-||.+|+..--|.=+|...|-.|--|+.=|..|.-+|+.+|.+.+.+.+..-+-++--..+|
T Consensus 159 lsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~------ 232 (617)
T PF15070_consen 159 LSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQR------ 232 (617)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------
Confidence 34667888889999999999998888999999999999999999999999999999888776655333331111
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
+.+-..++.|...- +....+++.|-.++-.-.+.+..|+ + -|++.|+......+|.+-.+
T Consensus 233 --dq~~~~Lqqy~a~~--------------q~l~~e~e~L~~q~l~Qtql~d~lq--~--eE~q~~~~~E~~~~ELq~~q 292 (617)
T PF15070_consen 233 --DQYLGHLQQYVAAY--------------QQLASEKEELHKQLLQQTQLMDRLQ--H--EESQGKVQLEMAHQELQEAQ 292 (617)
T ss_pred --HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH--H--HHhhhHHHHHHHHHHHHHHH
Confidence 12333333332221 3345666666655544333344444 1 24555555555556665444
Q ss_pred h
Q 039269 260 S 260 (439)
Q Consensus 260 ~ 260 (439)
.
T Consensus 293 e 293 (617)
T PF15070_consen 293 E 293 (617)
T ss_pred H
Confidence 3
No 80
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.40 E-value=7.8 Score=39.11 Aligned_cols=138 Identities=21% Similarity=0.176 Sum_probs=54.4
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEV 255 (439)
+|+=..++....+..|...|+..+.+... ......+..+.+.+.+|-..+.++|+.|.++.. .|.+|.
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~-~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~-----------~l~~el 80 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLEEESDS-EEDIEELEEELEKLEQEEEELLQELEELEKERE-----------ELDQEL 80 (314)
T ss_dssp ------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 44445566666677777777666521111 222233344444444444444555554444444 455677
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccc
Q 039269 256 KSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKL 326 (439)
Q Consensus 256 KsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l 326 (439)
+.|.....+++++-.++.++...+..-+.+=.+...-..+...-.......|+ |.--+|--|-+.-+|.|
T Consensus 81 ~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~-ktNv~n~~F~I~hdG~f 150 (314)
T PF04111_consen 81 EELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR-KTNVYNDTFHIWHDGPF 150 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-T--TTTTT--EEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhceeeEeecCCe
Confidence 77777777777777788888777776665433333333333333333333332 23345555666666654
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.35 E-value=16 Score=40.43 Aligned_cols=99 Identities=22% Similarity=0.245 Sum_probs=62.2
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH-----------------HHHHHHHHhhhhh
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVV-----------------REQLENLHKQHEE 239 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~-----------------r~~le~L~k~~~E 239 (439)
+|=-+++++..+.+++..++.+...-.......+....++..+.+++... +..++.-.+...+
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~ 412 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVE 412 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777777777777776666666666666666666666666544 3333333456666
Q ss_pred hhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 240 SEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 240 lEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
|..|--.=++-|..|++.||..+..-..|..+.+.+
T Consensus 413 L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ 448 (594)
T PF05667_consen 413 LAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQE 448 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 666666667778888888887776555555544433
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.04 E-value=36 Score=36.55 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=33.6
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHH
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLL 251 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvL 251 (439)
+|+.|+|=+++.+.++.-+..-.....+..-...+....++.++.-.....++..++++.++.+.+.-++.+-+...-+|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444333333333333333333444444444444444444444444444444444444334444443
Q ss_pred H
Q 039269 252 V 252 (439)
Q Consensus 252 v 252 (439)
+
T Consensus 118 a 118 (420)
T COG4942 118 A 118 (420)
T ss_pred H
Confidence 3
No 83
>PRK01156 chromosome segregation protein; Provisional
Probab=87.98 E-value=50 Score=36.96 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=11.9
Q ss_pred CCCCCCccHHHHHHHHHHHH
Q 039269 374 ANGSDRRSDDELRQMLTDIF 393 (439)
Q Consensus 374 s~~~~~~tddElRKmLaDlf 393 (439)
.++...+.|.+-+..|.++|
T Consensus 831 lDEpt~~lD~~~~~~l~~~l 850 (895)
T PRK01156 831 MDEPTAFLDEDRRTNLKDII 850 (895)
T ss_pred EeCCCCcCCHHHHHHHHHHH
Confidence 33444456667667777766
No 84
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.91 E-value=6.4 Score=37.88 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
+......+.+|++.++.++.++.++....-+.-.-...-.-+.+..|++...+|++++..+-++...++.-+...+
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444433332222222334445555777777777777776666655555554444
No 85
>PHA02562 46 endonuclease subunit; Provisional
Probab=87.68 E-value=38 Score=35.26 Aligned_cols=14 Identities=0% Similarity=0.050 Sum_probs=5.9
Q ss_pred hhhhhhHHHHHHhh
Q 039269 143 TKVKDLEVELETTS 156 (439)
Q Consensus 143 tKVkDLEveLettk 156 (439)
..+.+++.+++...
T Consensus 213 ~~i~~l~~e~~~l~ 226 (562)
T PHA02562 213 ENIARKQNKYDELV 226 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 86
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.34 E-value=22 Score=32.22 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
+....+.+|.+||+.....|......+.+.+.+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ 109 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVK 109 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555544443
No 87
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=87.22 E-value=16 Score=41.36 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHh---hHHHHHHHHHH
Q 039269 111 NNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSEN---CKENMQQAVLN 169 (439)
Q Consensus 111 ~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk---~ke~lqQAvl~ 169 (439)
-+.|.||+.-.-|.|-|+--..=-+.--+-=-.|++|||+-|+.-++| ..|-|||-.+.
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqells 168 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLS 168 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHh
Confidence 367888888888888887443211111122247999999999988776 45777887766
No 88
>PF13514 AAA_27: AAA domain
Probab=86.63 E-value=59 Score=37.81 Aligned_cols=67 Identities=31% Similarity=0.364 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhcc-ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQ--HEESEVKS-KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~--~~ElEaks-kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~el 279 (439)
..+...+.+++..++.++...... ..++.... ..|..-|..++..|......+.+++.+...+..++
T Consensus 853 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~ 922 (1111)
T PF13514_consen 853 AEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQEERAEL 922 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655433221 11221111 12333444444444444444444444444443333
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=86.47 E-value=34 Score=33.39 Aligned_cols=123 Identities=24% Similarity=0.287 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq 262 (439)
+|=...-.++.+=+...|+.....-+...+..-|..|..|+..+++++.++++-.. --|.|-.|+..||..-
T Consensus 5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~--------~aK~l~eEledLk~~~ 76 (193)
T PF14662_consen 5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ--------KAKALEEELEDLKTLA 76 (193)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 44455566777777788888888888889999999999999999999999974322 2366788899999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 263 SEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 263 ~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
..|..+-.+++.+-.++|+=-+.=-...+.=+.-+.|++.|+.-|..|-++
T Consensus 77 ~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 77 KSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHH
Confidence 888888888888877777543332222333333344555555555444443
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.42 E-value=33 Score=33.27 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=23.8
Q ss_pred hhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHh
Q 039269 121 KADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSEN 158 (439)
Q Consensus 121 KTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk 158 (439)
|-+|.+|=.||-..+.-=-||-..-+.|+.++...+.+
T Consensus 3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 44566677777777776677777777777777766666
No 91
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=86.37 E-value=70 Score=36.93 Aligned_cols=87 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH-----HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 222 ELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV-----KSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIA 296 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEakskad~KvLvKEV-----KsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~a 296 (439)
|+....+.+-.++-..+++|+|..|.-.-+ .+. |.=|.-|-++.++-+.|..+-.+|--.|++-. + .+|
T Consensus 531 e~~rq~~~~~~sr~~~~~le~~~~a~qat~-d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~E----q-~aa 604 (961)
T KOG4673|consen 531 ELTRQKDYYSNSRALAAALEAQALAEQATN-DEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKE----Q-QAA 604 (961)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----H-HHH
Confidence 334444555555566667777776653322 122 22344455666666777777777766665433 3 344
Q ss_pred HHH--HHhHHHHHHHHhhhh
Q 039269 297 NLK--LLHECEILRNRLQEC 314 (439)
Q Consensus 297 r~K--llhEc~iLr~RLQEC 314 (439)
|+. |=||++-|+.|||+.
T Consensus 605 rrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 605 RREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 443 558999999999974
No 92
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.31 E-value=30 Score=39.72 Aligned_cols=175 Identities=20% Similarity=0.245 Sum_probs=93.3
Q ss_pred CCCceeeechhhhhhHHHHHHHHHHHHHHhh---hchHHHHHHhhHHHHHHHH----HHhhhhhhHHHHHHhhHhhHHHH
Q 039269 91 PRNSLLALPSDQRLKLNRVLNNMQQRLTAAK---ADTEDLLARLNQEVAVRQF----LTTKVKDLEVELETTSENCKENM 163 (439)
Q Consensus 91 ~~d~~ivlP~dqR~KlnRvl~Tmq~Rl~taK---TDmEDLiaRLnQE~AVk~f----L~tKVkDLEveLettkqk~ke~l 163 (439)
.....|++|..|+--+--=+.|++.||.+|. |+.-|+-+.|+-+.|=|+- +-.|+.-|-.-|
T Consensus 53 ~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerL----------- 121 (916)
T KOG0249|consen 53 KLQRDIREAMAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERL----------- 121 (916)
T ss_pred HHhhhhhhHHhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHH-----------
Confidence 3445667777777666666778888888886 5667777777766665442 112222222222
Q ss_pred HHHHHHhhhhhhhhhccHHHHH-HHHHHHHHhhhhHHhhhHhh-------hhhhhhhHHHHHHHHHHHHHHHHHHHHH--
Q 039269 164 QQAVLNEKERFTQMQWDMEELR-KQLLETELKLKYEQDERARA-------ESSKMSIIQENEMLLQELEVVREQLENL-- 233 (439)
Q Consensus 164 qQAvl~EREr~tqmQWdmeElr-~k~~e~E~~Lks~qdek~~~-------e~~~~s~~~e~~~l~qEL~~~r~~le~L-- 233 (439)
-+.|-+--|. +| .++-+.|..|+.--++-+-. +++..-...+++.+-+||..+++.++.=
T Consensus 122 ---elaE~~l~qs-------~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemnee 191 (916)
T KOG0249|consen 122 ---ELAEPKLQQS-------LRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEE 191 (916)
T ss_pred ---HHhhHhhHhH-------HhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2222222222 11 12334444444443333333 3333444556666666666666555432
Q ss_pred -------------HhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 234 -------------HKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRM 290 (439)
Q Consensus 234 -------------~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~ 290 (439)
+-+..|. .+++-++..|-.|+.+++++..++..+.+++-.. .|++.++++|..
T Consensus 192 h~~rlsdtvdErlqlhlker-maAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d---~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 192 HNKRLSDTVDERLQLHLKER-MAALEDKNRLEQELESVKKQLEEMRHDKDKLRTD---IEDLRGELDQLR 257 (916)
T ss_pred hccccccccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHH
Confidence 1222222 3345566677777777777777776666665443 355556666555
No 93
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.05 E-value=37 Score=33.48 Aligned_cols=8 Identities=38% Similarity=0.658 Sum_probs=3.4
Q ss_pred hHHHhhhh
Q 039269 430 KTVLSRFL 437 (439)
Q Consensus 430 ~t~ls~~l 437 (439)
++.+.|+|
T Consensus 402 ~~~~~~~l 409 (423)
T TIGR01843 402 RTVIEYLL 409 (423)
T ss_pred ccHHHHHH
Confidence 33344444
No 94
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=85.91 E-value=44 Score=37.07 Aligned_cols=136 Identities=24% Similarity=0.249 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
+.+++.++...|.+|+.++........ ..+...+.+++..++.|+..++.+..++...-..+- =+|++|+.
T Consensus 276 L~~l~~~L~~aE~~l~~fr~~~~~~d~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~h----P~v~~l~~ 346 (726)
T PRK09841 276 LPEVRSELDQAEEKLNVYRQQRDSVDL-----NLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDH----PTYRALLE 346 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----chHHHHHH
Confidence 444888888888888888666544332 233444555666666666666555544433221111 13466666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCC
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEKQ--RMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTS 331 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ekq--~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~S 331 (439)
+...|++++.++-.+- ..+-..|++ +-++...+.+.++ ..|.+|.+|-.+.......+--+||+-
T Consensus 347 ~~~~L~~~~~~l~~~~---~~~p~~e~~~~~L~R~~~~~~~lY---~~lL~r~~e~~i~~a~~~~~~rIid~A 413 (726)
T PRK09841 347 KRQTLEQERKRLNKRV---SAMPSTQQEVLRLSRDVEAGRAVY---LQLLNRQQELSISKSSAIGNVRIIDPA 413 (726)
T ss_pred HHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCCCceeeccCC
Confidence 6666666666553332 233333332 2233334444444 356888899888776665555555544
No 95
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=85.76 E-value=35 Score=38.51 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHHHH-HHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 103 RLKLNRVLNNMQQR-LTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 103 R~KlnRvl~Tmq~R-l~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.+-|.+....+..+ +.-...=.+.+-.|+++-.+-++--..++.+|+.+.+..+
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555433 2323333445555666666666666666666666665554
No 96
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=85.56 E-value=94 Score=37.67 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHH-----hhHhhHHHHHHHHHHhhhhhhh
Q 039269 111 NNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELET-----TSENCKENMQQAVLNEKERFTQ 176 (439)
Q Consensus 111 ~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLet-----tkqk~ke~lqQAvl~EREr~tq 176 (439)
..+.......+ +.|++++-|++.+.- .+.-+.+|-. ..+..++..+++-.. ++..+-
T Consensus 451 ~~~~~~~~~~~-~~~~~~keL~e~i~~-------lk~~~~el~~~q~~l~q~~~ke~~ek~~~~-~~~~~~ 512 (1317)
T KOG0612|consen 451 EKLDEKCQAVA-ELEEMDKELEETIEK-------LKSEESELQREQKALLQHEQKEVEEKLSEE-EAKKRK 512 (1317)
T ss_pred hhHHHHHHHHh-hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHH
Confidence 34444444444 778888888877653 3334444432 334445555554433 444444
No 97
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=85.24 E-value=46 Score=33.77 Aligned_cols=190 Identities=14% Similarity=0.108 Sum_probs=97.6
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhh---------hHHHHHHhhHhhHHHHHHHHHHh---h
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKD---------LEVELETTSENCKENMQQAVLNE---K 171 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkD---------LEveLettkqk~ke~lqQAvl~E---R 171 (439)
..+.+.|..+..-....+.--+..-..|+.|..+-+=+-.|-.. +=..|-+.-.+.+..|+||.-.= |
T Consensus 75 ~~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~eD~~~R~kyg~rWtr~pS~~~~~~l~~~i~~~r~~L~~A~~sD~~v~ 154 (339)
T cd09238 75 AALEGELPRLRELRRVCTELLAAAQESLEAEATEDSAARTQYGTAWTRPPSATLTKNLWERLNRFRVNLEQAGDSDESLR 154 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45677777777777778888888888888888877666666533 44456666677778888886431 3
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccch-hH
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDV-KL 250 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~-Kv 250 (439)
++|.+..=+++.|.... ++..+-+....-........+++.....++.+|+.++.+=..+-+...+... .-|| .+
T Consensus 155 ~k~~~~~~~l~~L~~~~--~~~~~Ps~~~~~~~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~~Lk~~~~--~DDI~~~ 230 (339)
T cd09238 155 RRIEDAMDGMLILDDEP--AAAAAPTLRAPMLSTDEDDASIVGTLRSNLEELEALGNERAGIEDMMKALKR--NDNILAK 230 (339)
T ss_pred HHHHHHHHHHHhcCcHh--hHhhCCCCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCcHHH
Confidence 33444333333342211 1111111000000000123456677777777777775554444333322211 3344 23
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKL 300 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~Kl 300 (439)
|+.+...+ ..-..+||..|-.-...++.-+.+.......-+.++.+|
T Consensus 231 ll~~~~~~---e~lF~~eL~kf~~~~~~v~~~~~~Q~~ll~~i~~~n~~f 277 (339)
T cd09238 231 VMATTGSY---DALFKEELKKYDSVREAVSKNISSQDDLLSRLRALNEKF 277 (339)
T ss_pred HHHhhhhh---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443221 122444555555555555555555554444444444444
No 98
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=85.22 E-value=75 Score=36.23 Aligned_cols=196 Identities=20% Similarity=0.211 Sum_probs=99.0
Q ss_pred echhhhh----hHHHHHHHHHHHHHH---------hhhchHHHHHHhhHHHHHHHHHHhhhhhhH---HHHHHhhHhhHH
Q 039269 98 LPSDQRL----KLNRVLNNMQQRLTA---------AKADTEDLLARLNQEVAVRQFLTTKVKDLE---VELETTSENCKE 161 (439)
Q Consensus 98 lP~dqR~----KlnRvl~Tmq~Rl~t---------aKTDmEDLiaRLnQE~AVk~fL~tKVkDLE---veLettkqk~ke 161 (439)
+|.+++. |.++.+..+-+|+.. -|+.++|.-.|.-|....++.|-.|++-.. +|++++-+.--+
T Consensus 386 ~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed 465 (698)
T KOG0978|consen 386 LLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFED 465 (698)
T ss_pred CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888 555655555555432 245677778888888888888888887654 555555432211
Q ss_pred -------HHHH---------HHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 039269 162 -------NMQQ---------AVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEV 225 (439)
Q Consensus 162 -------~lqQ---------Avl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~ 225 (439)
-+|| +.|.||.+.+|+. ..||.+...|+..+... ....+++...+-.
T Consensus 466 ~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~---k~L~~ek~~l~~~i~~l--------------~~~~~~~~~~i~~ 528 (698)
T KOG0978|consen 466 MQEQNQKLLQELREKDDKNFKLMSERIKANQKH---KLLREEKSKLEEQILTL--------------KASVDKLELKIGK 528 (698)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Confidence 0000 2344444444432 22333444443333332 3333344444444
Q ss_pred HHHHHHHHHhhhhhhhhcc------ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 226 VREQLENLHKQHEESEVKS------KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLK 299 (439)
Q Consensus 226 ~r~~le~L~k~~~ElEaks------kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~K 299 (439)
..+++.-|+....-+.+.+ ...-|-.+-|++ .+...|+.+++.+.+...+++..+..=+-..+.-..-+..
T Consensus 529 leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~---~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~r 605 (698)
T KOG0978|consen 529 LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAK---QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKR 605 (698)
T ss_pred HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443332222221 112222222222 2334555555555555555555555544444555555666
Q ss_pred HHhHHHHHHHHhhh
Q 039269 300 LLHECEILRNRLQE 313 (439)
Q Consensus 300 llhEc~iLr~RLQE 313 (439)
+=.||..|+.-|..
T Consensus 606 leEE~e~L~~kle~ 619 (698)
T KOG0978|consen 606 LEEELERLKRKLER 619 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 67788888776643
No 99
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=84.79 E-value=49 Score=39.28 Aligned_cols=147 Identities=15% Similarity=0.183 Sum_probs=86.9
Q ss_pred HhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhh
Q 039269 130 RLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSK 209 (439)
Q Consensus 130 RLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~ 209 (439)
||---.-|+.| ..+.++|+..|+-.+..-.+..|++--. +-++-+.+-+...+-++.-.+=..++...+++...+.++
T Consensus 666 rLe~~k~~~~~-~~~~~~l~~~L~~~r~~i~~~~~~i~q~-~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~ 743 (1200)
T KOG0964|consen 666 RLELLKNVNES-RSELKELQESLDEVRNEIEDIDQKIDQL-NNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESL 743 (1200)
T ss_pred HHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 44444555555 5678888888888776666665554333 333444444445555555555556666666666677766
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHE-ESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~-ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~ 281 (439)
.....+.+.+...+...+.+.+.+..+.+ ++-.+-.. --...|++|+.....|.+++.++..+..++++
T Consensus 744 ~~k~~~Le~i~~~l~~~~~~~~~~e~el~sel~sqLt~---ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~ 813 (1200)
T KOG0964|consen 744 EPKGKELEEIKTSLHKLESQSNYFESELGSELFSQLTP---EELERLSKLNKEINKLSVKLRALREERIDIET 813 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHhhcCH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665544432 11111111 12356777777777777777776666655444
No 100
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.67 E-value=76 Score=35.87 Aligned_cols=66 Identities=26% Similarity=0.361 Sum_probs=35.6
Q ss_pred HhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHH---HHHHhhhhhhhhhccHHHHHHHHHHHHHhh
Q 039269 119 AAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQ---AVLNEKERFTQMQWDMEELRKQLLETELKL 195 (439)
Q Consensus 119 taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQ---Avl~EREr~tqmQWdmeElr~k~~e~E~~L 195 (439)
.++.--.|-+.||=+ -||-|-.||...||--.|==+| ..-.||. ..=++..+|.++.+++.++
T Consensus 411 ~~~~~~~~a~~rLE~----------dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~----lk~eL~qlr~ene~Lq~Kl 476 (697)
T PF09726_consen 411 NAQNSEPDAISRLEA----------DVKKLRAELQSSRQSEQELRSQISSLTNNERS----LKSELSQLRQENEQLQNKL 476 (697)
T ss_pred cccccChHHHHHHHH----------HHHHHHHHHHhhhhhHHHHHHHHhhccccchH----HHHHHHHHHHHHHHHHHHH
Confidence 333444566665544 4567888888888876665555 2222331 2223334555555555555
Q ss_pred hhH
Q 039269 196 KYE 198 (439)
Q Consensus 196 ks~ 198 (439)
...
T Consensus 477 ~~L 479 (697)
T PF09726_consen 477 QNL 479 (697)
T ss_pred HHH
Confidence 554
No 101
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=83.63 E-value=88 Score=37.18 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHhhhchHHHHHHhhHHHH----------HHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHH
Q 039269 118 TAAKADTEDLLARLNQEVA----------VRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQ 187 (439)
Q Consensus 118 ~taKTDmEDLiaRLnQE~A----------Vk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k 187 (439)
+++|++.++|++++|=.+. |.+| +++.-.+-=-||-+--+.+.|-++--. +.+||..
T Consensus 123 a~t~s~i~elv~~fNIQi~NLCqFLpQDkV~EF--a~L~pi~LL~eTekAig~~~ll~~h~e-----------L~~lr~~ 189 (1072)
T KOG0979|consen 123 ATTKSEIEELVAHFNIQIDNLCQFLPQDKVKEF--ARLSPIELLVETEKAIGAEELLQYHIE-----------LMDLRED 189 (1072)
T ss_pred hhhhHHHHHHHHHHhcccCchhhhccHHHHHHH--HcCChHHHHHHHHHhcCchhhHHHHHH-----------HHHHHHH
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---------------------hhhhhhhhcccc
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH---------------------KQHEESEVKSKT 246 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~---------------------k~~~ElEakska 246 (439)
..++|.++... ..++..+.++.+.|.+..+..++..-.+. .+|...=-..|.
T Consensus 190 e~~Le~~~~~~-------~~~l~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~ 262 (1072)
T KOG0979|consen 190 EKSLEDKLTTK-------TEKLNRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKK 262 (1072)
T ss_pred HHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHH
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 039269 247 DVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 247 d~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RL 311 (439)
+.+.|.|+++-+=.--.+|+.+.+....+-+.+-..+.+=.++.-..-.--...=-++..+.+.|
T Consensus 263 ~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~l 327 (1072)
T KOG0979|consen 263 ELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKL 327 (1072)
T ss_pred HHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 102
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=83.55 E-value=87 Score=36.87 Aligned_cols=162 Identities=19% Similarity=0.200 Sum_probs=80.8
Q ss_pred hhhhhHHHHHHhhHhhHH----------HHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhH
Q 039269 144 KVKDLEVELETTSENCKE----------NMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSII 213 (439)
Q Consensus 144 KVkDLEveLettkqk~ke----------~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~ 213 (439)
-||.|-.+|++.+|.... .+.-+++-=.--+--+|-++-|-|+|.--.-.+++..+..+..+..-..++.
T Consensus 292 lVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~ 371 (1265)
T KOG0976|consen 292 LVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHH
Confidence 467777777777765432 2333333322223345666666667666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 039269 214 QENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRL-------MKEKLEVEGVLQKE 286 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~-------~~eK~elE~~L~~E 286 (439)
+.++....|+..+...-..++++.+++--+. . =.-.+|.-|.-.|-||..+ -++...++.-+..=
T Consensus 372 e~k~nve~elqsL~~l~aerqeQidelKn~i------f--~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 372 EKKENVEEELQSLLELQAERQEQIDELKNHI------F--RLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------h--hhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence 6555555555555444444444444432110 0 0111222233333333322 23333333333333
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 287 KQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 287 kq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
+--.++++.+|+.-..-|--+-+|+|-
T Consensus 444 k~Lke~aegsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 444 KVLKEHAEGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred HHHHHhhhhhHhhHHHHHHHHHHHHHH
Confidence 444555666666666666666666553
No 103
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.54 E-value=76 Score=34.97 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=27.0
Q ss_pred echhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 98 LPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 98 lP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
+=..--.+-.+|.+++=+-+..-. +-.|........+||...+.+|..+|+...
T Consensus 161 ~~~~dP~~Aa~iaN~la~~Y~~~~-----~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE 214 (754)
T TIGR01005 161 FRSEDPKLAAAIPDAIAAAYIAGQ-----GAAKSESNTAAADFLAPEIADLSKQSRDAE 214 (754)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455566665544443221 223334445567777766666655554443
No 104
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=83.50 E-value=72 Score=34.64 Aligned_cols=231 Identities=21% Similarity=0.283 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHH-HHHHhhhchHHH-------HHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhh
Q 039269 103 RLKLNRVLNNMQQ-RLTAAKADTEDL-------LARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERF 174 (439)
Q Consensus 103 R~KlnRvl~Tmq~-Rl~taKTDmEDL-------iaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~ 174 (439)
+.+++..+..+.. .+..|.+.++++ ...|-.|+..|.|....++.+..-|+..+..++.-.. |=+|+
T Consensus 258 ~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~-----e~~~v 332 (560)
T PF06160_consen 258 EEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE-----ELERV 332 (560)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 4444554444433 344455544444 4445568899999999999999999888888776443 33333
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKE 254 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKE 254 (439)
.+ .|. |... -......+.++|..+.++++.+.+...+= .+---.+..+
T Consensus 333 ~~-------------sY~--L~~~-------------e~~~~~~l~~~l~~l~~~~~~~~~~i~~~----~~~yS~i~~~ 380 (560)
T PF06160_consen 333 SQ-------------SYT--LNHN-------------ELEIVRELEKQLKELEKRYEDLEERIEEQ----QVPYSEIQEE 380 (560)
T ss_pred HH-------------hcC--CCch-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcCHHHHHHH
Confidence 33 110 0000 01122223333444444443333222211 1112223333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCc
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPS 334 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~s 334 (439)
++.+.... .+.-++-.++...|+.=+.....|+..-.+|-.++...+-+++-.|+.=+ |.
T Consensus 381 l~~~~~~l-------~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGl-------------p~ 440 (560)
T PF06160_consen 381 LEEIEEQL-------EEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGL-------------PE 440 (560)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-------------CH
Confidence 33333333 33333333333333333333333444444555555566666665554322 66
Q ss_pred chhhhhhccchhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039269 335 DAVDLLTTSDNRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCAL 411 (439)
Q Consensus 335 DAldLLaTSDnRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al 411 (439)
+-++++...-+.|.-|-++..-. +.-=+++.+.|..+--|=..|-..+|.++.+|.
T Consensus 441 ~y~~~~~~~~~~i~~l~~~L~~~---------------------pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~ 496 (560)
T PF06160_consen 441 DYLDYFFDVSDEIEELSDELNQV---------------------PINMDEVNKQLEEAEDDVETLEEKTEELIDNAT 496 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC---------------------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887665554322 112245666666666666666666666666664
No 105
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=83.31 E-value=0.36 Score=52.75 Aligned_cols=95 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 218 MLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIAN 297 (439)
Q Consensus 218 ~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar 297 (439)
-|+.++..++++...|.+....+|.+.+.=. -+-..+-.++++..+|+++++........++.=+.+=+++-+.....+
T Consensus 329 ~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~-~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~ek 407 (713)
T PF05622_consen 329 DLKRQVKELEEDNAVLLETKAMLEEELKKAR-ALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEK 407 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444445555555544321 122344455555555555555443333332222222222333333444
Q ss_pred HHHHhHHHHHHHHhhh
Q 039269 298 LKLLHECEILRNRLQE 313 (439)
Q Consensus 298 ~KllhEc~iLr~RLQE 313 (439)
..+..|...|+.++.+
T Consensus 408 e~l~~e~~~L~e~~ee 423 (713)
T PF05622_consen 408 ERLQEERDSLRETNEE 423 (713)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566666666665543
No 106
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.19 E-value=24 Score=36.01 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=6.9
Q ss_pred HHHHhHHHHHHHHh
Q 039269 298 LKLLHECEILRNRL 311 (439)
Q Consensus 298 ~KllhEc~iLr~RL 311 (439)
..|-+|+..|+..|
T Consensus 150 d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 150 DSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555555
No 107
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=83.12 E-value=16 Score=38.89 Aligned_cols=243 Identities=15% Similarity=0.224 Sum_probs=71.1
Q ss_pred HhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHH-hhhh-HHhhhHhhhhhhhhhHHHHHHH
Q 039269 142 TTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETEL-KLKY-EQDERARAESSKMSIIQENEML 219 (439)
Q Consensus 142 ~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~-~Lks-~qdek~~~e~~~~s~~~e~~~l 219 (439)
...|++|.-+|..+||--... .+.|+=.|..||.|...+=. .++. -..++++.+..+.....+.+.|
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~-----------~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~L 218 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEF-----------QSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRL 218 (424)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHH
Confidence 558899999999999855443 33455566778888754222 1111 2467999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVK-SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEK-----LEVEGVLQKEKQRMEHA 293 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEak-skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK-----~elE~~L~~Ekq~~e~~ 293 (439)
...+++++.-+|.|.+..-.==++ +..+++-+.|++..+......|+.-+...--.| .||++|..++..-..+.
T Consensus 219 l~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Qe 298 (424)
T PF03915_consen 219 LTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQE 298 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998753221111 234566677777777777666665555443333 46777765555433332
Q ss_pred HHHHHHHHhHHHH---HHHHhhhhccccccccc---ccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhhhhhhcc
Q 039269 294 DIANLKLLHECEI---LRNRLQECSVNFLSEEE---DKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDIERSMTG 367 (439)
Q Consensus 294 ~~ar~KllhEc~i---Lr~RLQECn~~~l~ee~---d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~E~~~~~ 367 (439)
. --..|-.+|.- ...-++-|...-...-. .+.+-.. ..+++-. +-. +=-+-+|.|++-|.+|+|.=..+
T Consensus 299 d-L~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~-~~~~pg~--~~~-~~~~~VL~EV~aL~PDHE~RLeA 373 (424)
T PF03915_consen 299 D-LLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANL-PIPEPGE--DPH-EARDQVLGEVRALQPDHESRLEA 373 (424)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHCT------------------------------------------------------
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCC-CCCCCCC--Chh-hHHHHHHHHHHhcCCCcHHHHHH
Confidence 1 22233333333 23344555422211000 1111000 0111110 000 11235788999999999975444
Q ss_pred ccccc---CCCCCCCccHHHHHHHHHHHHHhhHHHHHH
Q 039269 368 LDKTC---NANGSDRRSDDELRQMLTDIFIDNARLRMQ 402 (439)
Q Consensus 368 ~~~~~---~s~~~~~~tddElRKmLaDlfiDNA~LRkq 402 (439)
+...- .-.-. ....|++.+=|.+ |+++-+|+|+
T Consensus 374 IerAEKlRqkele-~~~~~~f~~EL~~-FV~~~kLKks 409 (424)
T PF03915_consen 374 IERAEKLRQKELE-YRRVDEFQKELGN-FVEEKKLKKS 409 (424)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHH-hccccHHHHHHHH-HhccCccccc
Confidence 43322 11111 1244566677776 7888888874
No 108
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=83.03 E-value=4.6 Score=32.42 Aligned_cols=86 Identities=16% Similarity=0.237 Sum_probs=72.9
Q ss_pred ceeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhh
Q 039269 94 SLLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKER 173 (439)
Q Consensus 94 ~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr 173 (439)
..+=||.+|+.++..++............++...-..|+...+-..|=..||..+=.++..............++.-+.-
T Consensus 38 ~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~ 117 (125)
T PF13801_consen 38 DMLNLTPEQQAKLRALMDEFRQEMRALRQELRAARQELRALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAV 117 (125)
T ss_dssp HHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34568999999999999999999999999999999999999888888888999999999998888888888888888887
Q ss_pred hhhhhc
Q 039269 174 FTQMQW 179 (439)
Q Consensus 174 ~tqmQW 179 (439)
+|.=||
T Consensus 118 LtpeQR 123 (125)
T PF13801_consen 118 LTPEQR 123 (125)
T ss_dssp T-GGGH
T ss_pred CCHHHh
Confidence 776544
No 109
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=82.98 E-value=1.1e+02 Score=36.22 Aligned_cols=78 Identities=23% Similarity=0.242 Sum_probs=44.7
Q ss_pred HhhhhhhhhccccchhHHHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039269 234 HKQHEESEVKSKTDVKLLVKE-------VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 234 ~k~~~ElEakskad~KvLvKE-------VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~i 306 (439)
.+.++|-+-+-|+-.-||.+| ||-|..-..++||--.+++..-.+.-+.|..|- -+-.|.|+---|++
T Consensus 265 ak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~en-----mkltrqkadirc~L 339 (1265)
T KOG0976|consen 265 AKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLEN-----MKLTRQKADIRCAL 339 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 345555555555555555555 455555566666666666666666666666554 34445555555777
Q ss_pred HHHHhhhhcc
Q 039269 307 LRNRLQECSV 316 (439)
Q Consensus 307 Lr~RLQECn~ 316 (439)
|-+|+.-=++
T Consensus 340 lEarrk~egf 349 (1265)
T KOG0976|consen 340 LEARRKAEGF 349 (1265)
T ss_pred HHHHHhhcch
Confidence 7777665444
No 110
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.73 E-value=82 Score=34.73 Aligned_cols=129 Identities=23% Similarity=0.355 Sum_probs=88.9
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhh
Q 039269 99 PSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQ 178 (439)
Q Consensus 99 P~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQ 178 (439)
|++.---||-||..|+.- .+--+-+|--|-- -.-||-.||++|-. .+++| | |+. .+|..+-
T Consensus 308 pleedmaLNEvL~kLk~t----n~kQq~~IqdLq~---sN~yLe~kvkeLQ~--k~~kQ-------q-vfv--DiinkLk 368 (527)
T PF15066_consen 308 PLEEDMALNEVLQKLKHT----NRKQQNRIQDLQC---SNLYLEKKVKELQM--KITKQ-------Q-VFV--DIINKLK 368 (527)
T ss_pred CcHHHHHHHHHHHHHHhh----hHHHHHHHHHhhh---ccHHHHHHHHHHHH--Hhhhh-------h-HHH--HHHHHHH
Confidence 777778899999877653 3333334433321 23599999998854 33332 3 232 3666666
Q ss_pred ccHHHHHHH-H------HHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhcccc
Q 039269 179 WDMEELRKQ-L------LETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE-ESEVKSKT 246 (439)
Q Consensus 179 WdmeElr~k-~------~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~-ElEakska 246 (439)
-+||||--- | -+++-.|+..+.--+...-.++....|+++|.-||..++-.+-.||.+|- |++-|-|+
T Consensus 369 ~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnks 444 (527)
T PF15066_consen 369 ENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKS 444 (527)
T ss_pred HHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhH
Confidence 666666321 1 35778888888888888888888999999999999999999999988774 55555554
No 111
>PRK11519 tyrosine kinase; Provisional
Probab=82.65 E-value=82 Score=35.01 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
+.+++.++.+.|.+|+.++........ ..+.+.+.+.+...+.|+-.++.+..++......+-- .|++|..
T Consensus 276 l~~l~~~L~~aE~~l~~fr~~~~~vd~-----~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP----~v~~l~~ 346 (719)
T PRK11519 276 LPEVRSRLDVAENKLNAFRQDKDSVDL-----PLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHP----AYRTLLE 346 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc----HHHHHHH
Confidence 344888888888888888766554332 2333444444555555555554444444322111110 1233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCC
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEK--QRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTS 331 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ek--q~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~S 331 (439)
+...|+++++++-.+-.. +-..|+ .+-++...+.++++. .|-+|.+|-.+..-....+--+||+-
T Consensus 347 ~~~~L~~~~~~l~~~~~~---lp~~e~~~~~L~Re~~~~~~lY~---~lL~r~~e~~i~~a~~~~~~rIid~A 413 (719)
T PRK11519 347 KRKALEDEKAKLNGRVTA---MPKTQQEIVRLTRDVESGQQVYM---QLLNKQQELKITEASTVGDVRIVDPA 413 (719)
T ss_pred HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHhcCCCCCeEEEecC
Confidence 444555555544332222 222222 233334444455443 46688888777765555555556644
No 112
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.08 E-value=46 Score=31.42 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=29.3
Q ss_pred HHHHHHHHhHHHHHHHHhhhhccc-cccc-ccccceecCCCCcchhhhhhccchhHHHHHHH
Q 039269 294 DIANLKLLHECEILRNRLQECSVN-FLSE-EEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAE 353 (439)
Q Consensus 294 ~~ar~KllhEc~iLr~RLQECn~~-~l~e-e~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAE 353 (439)
...|+.++.+...+.- ++.++.. ...+ ..+.+++-.-++++.-+.....++.|+--|+=
T Consensus 143 ~~~r~~l~~~l~~ifp-I~~~~~~~~~~~~~~~~~~I~~~~lp~~~~~~~~~~~~isaALgy 203 (302)
T PF10186_consen 143 ARRRRQLIQELSEIFP-IEQVSSPRRPSDSSSSEYTICGLPLPNSRDFNSLPDEEISAALGY 203 (302)
T ss_pred HHHHHHHHHHHHHHhC-ceeecccccCCCCCCCCeeecCcccCCCcccccCCHHHHHHHHHH
Confidence 3456666666666554 2222000 0000 02223344445667777777777887655443
No 113
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.57 E-value=7.1 Score=37.58 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=13.8
Q ss_pred hhhhhhHHHHHHhhHhhHHHH
Q 039269 143 TKVKDLEVELETTSENCKENM 163 (439)
Q Consensus 143 tKVkDLEveLettkqk~ke~l 163 (439)
..+..||.+|+..+.+-.+..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777888877776555533
No 114
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.45 E-value=1.2 Score=48.87 Aligned_cols=124 Identities=25% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHH
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSII---QENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKS 257 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~---~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKs 257 (439)
||.++.++.++|......+++...-.+-..++. .--+.+...|..+|...-.|..+++.+++ +|+.
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~-----------~~~~ 368 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQS-----------ELRE 368 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhH-----------HHHH
Confidence 456666666666666655555443333222211 11123445555555555555566665553 4555
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 039269 258 LRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECS 315 (439)
Q Consensus 258 LR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn 315 (439)
|+....+|..++.++..+..+++.-+..-+....+-.--+.=+..||..||+.|....
T Consensus 369 l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd 426 (722)
T PF05557_consen 369 LEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYD 426 (722)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666666666666666666655544333332233333345689999999998743
No 115
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=81.37 E-value=92 Score=34.37 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=39.9
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSII-QENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~-~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
-++++|+++.+.|.+|+.++............+. ++...+.++|..++-+....+.++..++
T Consensus 202 ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~ 264 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVK 264 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555999999999999998776665544444443 5666666666666555555554444444
No 116
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=80.25 E-value=17 Score=39.64 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~ 277 (439)
..+.+.+.+++...+.+++.+++++.+++.+-+..-.-+..+-..|.+...++++++.+..++..
T Consensus 222 ~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 222 SEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666666666666666655555555666555566555555555555544443
No 117
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=80.23 E-value=77 Score=32.91 Aligned_cols=109 Identities=23% Similarity=0.343 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhH-------HhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 159 CKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYE-------QDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 159 ~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~-------qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
...+|.|.+-.=||+-..++-+.++||.++.|..--.|.. +.+......... .+|.+.|..+|+.++++.+
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~--~~ere~lV~qLEk~~~q~~ 143 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHF--PHEREDLVEQLEKLREQIE 143 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccccc--chHHHHHHHHHHHHHHHHH
Confidence 6678888888888999999999999998888776554443 222222222222 2888888888888888877
Q ss_pred HHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 232 NLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 232 ~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
.|+..+..+- -++--|+.|==..|.--.-|-+||+..+
T Consensus 144 qLe~d~qs~l----DEkeEl~~ERD~yk~K~~RLN~ELn~~L 181 (319)
T PF09789_consen 144 QLERDLQSLL----DEKEELVTERDAYKCKAHRLNHELNYIL 181 (319)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7765443221 1112233333334444444455555544
No 118
>PLN02320 seryl-tRNA synthetase
Probab=80.23 E-value=15 Score=39.84 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
|..-+|..-..+..+++... -... =........+...+..+++.+|.+...++++... .+.+.+..-|..|+|.|+
T Consensus 68 D~k~ir~n~~~v~~~l~~R~-~~~~-vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk 143 (502)
T PLN02320 68 DFKWIRDNKEAVAINIRNRN-SNAN-LELVLELYENMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLK 143 (502)
T ss_pred CHHHHHhCHHHHHHHHHhcC-CCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHH
Confidence 67777777777777776552 1111 1234445556666667777777777777777665 344456666777777766
Q ss_pred hhhHHHHHHHHH
Q 039269 260 SSQSEVKQELSR 271 (439)
Q Consensus 260 ~sq~elkqEl~~ 271 (439)
....+|++++..
T Consensus 144 ~~i~~le~~~~~ 155 (502)
T PLN02320 144 EGLVTLEEDLVK 155 (502)
T ss_pred HHHHHHHHHHHH
Confidence 666555555443
No 119
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.45 E-value=49 Score=30.06 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=8.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q 039269 252 VKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 252 vKEVKsLR~sq~elkqEl~~~~ 273 (439)
-.++++++.....+.++.....
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.70 E-value=88 Score=32.55 Aligned_cols=154 Identities=25% Similarity=0.314 Sum_probs=92.7
Q ss_pred HHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHH
Q 039269 140 FLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEML 219 (439)
Q Consensus 140 fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l 219 (439)
.+..+++.|..++.+.++.+- .+|+-+=.|=|-|+.. |=++++.. |.+ |... .....+|=+.|
T Consensus 45 ~ek~~~~~L~~e~~~lr~~sv-~~~~~aEqEEE~isN~------LlKkl~~l----~ke---Ke~L---~~~~e~EEE~l 107 (310)
T PF09755_consen 45 TEKARCKHLQEENRALREASV-RIQAKAEQEEEFISNT------LLKKLQQL----KKE---KETL---ALKYEQEEEFL 107 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HHHHHHHH----HHH---HHHH---HHHHHHHHHHH
Confidence 345678888888888877654 4455455555555541 33333321 111 1000 00111111222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccch----hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDV----KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADI 295 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~----KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ 295 (439)
- ..+...|.-|..++.++|.+-.++- --|-+-+..|++.......+|++...+|-++|..|-.|-+--=+.--
T Consensus 108 t---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 108 T---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 2 2345567777777777777766644 45567788888877778889999999999999999988754333322
Q ss_pred HH-HHHHhHHHHHHHHhhh
Q 039269 296 AN-LKLLHECEILRNRLQE 313 (439)
Q Consensus 296 ar-~KllhEc~iLr~RLQE 313 (439)
-| .+|-.|=+.|+.+|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 22 2455677788888765
No 121
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.62 E-value=1.4e+02 Score=35.03 Aligned_cols=134 Identities=23% Similarity=0.309 Sum_probs=80.8
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH
Q 039269 143 TKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE 222 (439)
Q Consensus 143 tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE 222 (439)
.|-+.||.+-|.-+.|-.+.++-| -.|=||.-|++|+ |.+.+||=-.-..+|....+....+...-.|.+.|...
T Consensus 378 erQReiE~qrEEerkkeie~rEaa-r~ElEkqRqlewE----rar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k 452 (1118)
T KOG1029|consen 378 ERQREIERQREEERKKEIERREAA-REELEKQRQLEWE----RARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFK 452 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777887788888888877654 5668888899995 56667776666666666666777777777777776655
Q ss_pred HHHHHHHHHHH----HhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039269 223 LEVVREQLENL----HKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGV 282 (439)
Q Consensus 223 L~~~r~~le~L----~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~ 282 (439)
+.++-..|-+. ..+..++|.- ...+..-.-|++-|-....|+.+-|-+..-||.++.+-
T Consensus 453 ~qqls~kl~Dvr~~~tt~kt~ie~~-~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~q 515 (1118)
T KOG1029|consen 453 LQQLSGKLQDVRVDITTQKTEIEEV-TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQ 515 (1118)
T ss_pred HHHHhhhhhhheeccchHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55554333332 3333344332 12233334455555555555555555555555555543
No 122
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.20 E-value=1.3e+02 Score=34.18 Aligned_cols=248 Identities=25% Similarity=0.286 Sum_probs=137.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhchHHHHHH---------------------hhHHHHHH-HHHHhhhhhhHHHHHHhhH
Q 039269 100 SDQRLKLNRVLNNMQQRLTAAKADTEDLLAR---------------------LNQEVAVR-QFLTTKVKDLEVELETTSE 157 (439)
Q Consensus 100 ~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaR---------------------LnQE~AVk-~fL~tKVkDLEveLettkq 157 (439)
+.+.+-|+.-+.-|+.-+..++|+|+-+--- |=||-|.| +|+.-||-+||.||-..++
T Consensus 42 LeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~ 121 (772)
T KOG0999|consen 42 LEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQ 121 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777665322 33455555 6899999999999976665
Q ss_pred hhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 158 NCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 158 k~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
---. +-.|+||+++.--|.-+--...----..|+.+ --...+.-+-..++.-.|.+|=-.++++|-+|.+-.
T Consensus 122 el~~-----~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e---lKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQ 193 (772)
T KOG0999|consen 122 ELTN-----VQEENERLEKVHSDLKESNAAVEDQRRRLRDE---LKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQ 193 (772)
T ss_pred HHHH-----HHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhh
Confidence 4332 34688888885544322111110000111111 111123334456677777777778899999998888
Q ss_pred hhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc-
Q 039269 238 EESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSV- 316 (439)
Q Consensus 238 ~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~- 316 (439)
.|+|. .|-++|-|-.|+--|-.+.-+.--=..=+-++..+.=-.|+.|| +. +.|.+|=| +--+++=-=.+.
T Consensus 194 VEyEg-lkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~ER---eq-k~alkkEL---~q~~n~e~~~~~n 265 (772)
T KOG0999|consen 194 VEYEG-LKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQER---EQ-KNALKKEL---SQYRNAEDISSLN 265 (772)
T ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HH-HHHHHHHH---HHhcchhhhhhhh
Confidence 88886 57788888888876655443322111111111112222345555 32 33333322 222222111111
Q ss_pred cccccccccceecCCCC-cc-----------hhhhhh-----ccchhHHHHHHHHhhhhhhhhh
Q 039269 317 NFLSEEEDKLTVDTSSP-SD-----------AVDLLT-----TSDNRIGLLVAETQLLAQDIER 363 (439)
Q Consensus 317 ~~l~ee~d~l~vd~Ss~-sD-----------AldLLa-----TSDnRI~lLlAEaQlL~~d~E~ 363 (439)
++++-=+|+|.-|.+.| +| |.|+-| .||=--.++++|.|-|-+.-.+
T Consensus 266 ~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~tel~~p~sDl~sel~iseiqkLkqqL~s 329 (772)
T KOG0999|consen 266 HLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFTELQGPVSDLFSELNISEIQKLKQQLMS 329 (772)
T ss_pred hhheecccccccccCCCCCChhhhcchhhhccchhhhhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 22333344666665554 33 445544 3777778899999888766543
No 123
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.09 E-value=23 Score=39.09 Aligned_cols=146 Identities=21% Similarity=0.251 Sum_probs=38.1
Q ss_pred ceeeechhhhhhHHHHHHHHHHHHHHhhhc---------hHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHH--
Q 039269 94 SLLALPSDQRLKLNRVLNNMQQRLTAAKAD---------TEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKEN-- 162 (439)
Q Consensus 94 ~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTD---------mEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~-- 162 (439)
-+.+|=..+|.-|+.+|.+...=..+...+ .+||+..+.+..+--+ ..|++|+.+|...++.+...
T Consensus 406 rq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele---~~l~~l~~~l~~~k~~~~~~~~ 482 (722)
T PF05557_consen 406 RQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELE---AQLEELEEELSEQKQRNETLEA 482 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhccccchhh
Confidence 456777888888889998877666555544 5555554444222111 14566666665555433211
Q ss_pred ----HH-HHHHHh-------------hhhhhhhhccHHHHHHHHHHHHHhhhhHH--hh----hHh-hhhhhhhhHHHHH
Q 039269 163 ----MQ-QAVLNE-------------KERFTQMQWDMEELRKQLLETELKLKYEQ--DE----RAR-AESSKMSIIQENE 217 (439)
Q Consensus 163 ----lq-QAvl~E-------------REr~tqmQWdmeElr~k~~e~E~~Lks~q--de----k~~-~e~~~~s~~~e~~ 217 (439)
+. +..-.+ |..+..++=+.+.|+.....+|..|.... +. +++ .......+..--.
T Consensus 483 e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~ 562 (722)
T PF05557_consen 483 ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQ 562 (722)
T ss_dssp -----------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHH
T ss_pred hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHH
Confidence 11 111111 23455555555566666666666665411 11 111 1122334444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 218 MLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 218 ~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
.-.++|++++...+.|-.++..+|.
T Consensus 563 ~k~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 563 IKKSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4567777777777777777766654
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=77.90 E-value=45 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhhhH
Q 039269 181 MEELRKQLLETELKLKYE 198 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~ 198 (439)
+-++|.|+.+||......
T Consensus 3 i~~ir~K~~~lek~k~~i 20 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEI 20 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446888888888655444
No 125
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=77.35 E-value=55 Score=36.82 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHHHhhhhhhh---hh------hhcccccccCCCC----CCCccHHHHHHHH
Q 039269 348 GLLVAETQLLAQDI---ER------SMTGLDKTCNANG----SDRRSDDELRQML 389 (439)
Q Consensus 348 ~lLlAEaQlL~~d~---E~------~~~~~~~~~~s~~----~~~~tddElRKmL 389 (439)
.-++.|++-|++-. ++ -+.|..||..+.+ +..+..-.++++|
T Consensus 375 ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF 429 (670)
T KOG0239|consen 375 DDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLF 429 (670)
T ss_pred HHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHH
Confidence 34556888887643 33 3456667765555 3333444444443
No 126
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.64 E-value=26 Score=39.38 Aligned_cols=136 Identities=19% Similarity=0.251 Sum_probs=69.4
Q ss_pred HHHHHHHHHh--hhhhhHHHHHHh---hHhhH--------HHHHHHHHHh----------------hhhhhhhhccHHHH
Q 039269 134 EVAVRQFLTT--KVKDLEVELETT---SENCK--------ENMQQAVLNE----------------KERFTQMQWDMEEL 184 (439)
Q Consensus 134 E~AVk~fL~t--KVkDLEveLett---kqk~k--------e~lqQAvl~E----------------REr~tqmQWdmeEl 184 (439)
+.|+|-|+.- |+..+|.++..+ +.-++ ..+++|+... |..+++ .
T Consensus 348 AAA~kAY~~yk~kl~~vEr~~~~~g~~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~-------~ 420 (652)
T COG2433 348 AAAYKAYLAYKPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITV-------Y 420 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccchhH-------H
Confidence 4577777754 555666666555 32222 1245555432 223345 4
Q ss_pred HHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHH
Q 039269 185 RKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSE 264 (439)
Q Consensus 185 r~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~e 264 (439)
+.....++.+++..+ .||..|.-+++..+..++.|..+.+++-...+ +....-+|+..+.+-.-.
T Consensus 421 ~~~i~~~~~~ve~l~--------------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~ 485 (652)
T COG2433 421 EKRIKKLEETVERLE--------------EENSELKRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIER 485 (652)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHH
Confidence 444455555555553 33333333333333333444333333333333 223344666666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 265 VKQELSRLMKEKLEVEGVLQKEKQRME 291 (439)
Q Consensus 265 lkqEl~~~~~eK~elE~~L~~Ekq~~e 291 (439)
|+++|...-+.-.+|++=|.+=+++..
T Consensus 486 L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 486 LEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777766666677766666554433
No 127
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.62 E-value=92 Score=31.70 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhH
Q 039269 135 VAVRQFLTTKVKDLEVELETTSE 157 (439)
Q Consensus 135 ~AVk~fL~tKVkDLEveLettkq 157 (439)
....+||...+..++.+|+....
T Consensus 170 ~~~~~fl~~ql~~~~~~l~~ae~ 192 (444)
T TIGR03017 170 QKAALWFVQQIAALREDLARAQS 192 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555555443
No 128
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=76.57 E-value=38 Score=36.45 Aligned_cols=240 Identities=18% Similarity=0.293 Sum_probs=127.9
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHH-hhhhH-HhhhHhhhhhhhhhHHHHHHHH
Q 039269 143 TKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETEL-KLKYE-QDERARAESSKMSIIQENEMLL 220 (439)
Q Consensus 143 tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~-~Lks~-qdek~~~e~~~~s~~~e~~~l~ 220 (439)
.-|..|.-+|.-+||--. .-++.++=-|..+|.|...+-. .+..- -.++++.++.+.....+.+.|+
T Consensus 155 ~el~~lrrdLavlRQ~~~-----------~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~ll 223 (426)
T smart00806 155 AELKSLQRELAVLRQTHN-----------SFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLL 223 (426)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHH
Confidence 456667777777776543 3455666677789999987754 23332 4678999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhc-cccchhHHHHHHHHHhhhhHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHHH
Q 039269 221 QELEVVREQLENLHKQHEESEVK-SKTDVKLLVKEVKSLRSSQSEVKQELSR----LMKEK-LEVEGVLQKEKQRMEHAD 294 (439)
Q Consensus 221 qEL~~~r~~le~L~k~~~ElEak-skad~KvLvKEVKsLR~sq~elkqEl~~----~~~eK-~elE~~L~~Ekq~~e~~~ 294 (439)
-..|++++.+|.|.+.--.==++ ++-+.+...||+..++.....|+.=++. .-+.| +||++|.++...-.-+..
T Consensus 224 tkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQed 303 (426)
T smart00806 224 TKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQED 303 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754322221 2334556666666666665554432222 22222 456666554443222211
Q ss_pred HH--HHHHHhHHHHHHHHhhhhcccccc---cccccce-ecCCCCcchhhhhhccchhHHHHHHHHhhhhhhhhhhhccc
Q 039269 295 IA--NLKLLHECEILRNRLQECSVNFLS---EEEDKLT-VDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDIERSMTGL 368 (439)
Q Consensus 295 ~a--r~KllhEc~iLr~RLQECn~~~l~---ee~d~l~-vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~E~~~~~~ 368 (439)
-+ .+.=|....--++=++-|+..-.. .-..+.+ +-...|+|. .+=..-+|.|++-|-+|+|.-..++
T Consensus 304 L~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~~l~i~~pg~~-------~~~kd~VL~EV~aL~PdHEsRLeAI 376 (426)
T smart00806 304 LIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPVSLPVPTPGTF-------NDLKDQVLMEVRALKPDHESRLEAI 376 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCccCCCCCCCCh-------hHHHHHHHHHHHccCCChHHHHHHH
Confidence 11 111111111222233334332211 0111111 111112222 2234557889999999999744433
Q ss_pred ccc---cCCCCCCCccHHHHHHHHHHHHHhhHHHHHH
Q 039269 369 DKT---CNANGSDRRSDDELRQMLTDIFIDNARLRMQ 402 (439)
Q Consensus 369 ~~~---~~s~~~~~~tddElRKmLaDlfiDNA~LRkq 402 (439)
... ..---.. ..-|++.+=|.+ |++|-+|+|+
T Consensus 377 ErAEklR~kEle~-r~~d~Fq~ELg~-FVe~~kLKks 411 (426)
T smart00806 377 ERAEKLREKELEY-RRVDEFEKELGN-FVENGKLKKS 411 (426)
T ss_pred HHHHHHHHHHHHh-ccccHHHHHHHH-HhccCCcccC
Confidence 221 1000000 123455555555 6777666654
No 129
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=76.45 E-value=60 Score=29.50 Aligned_cols=104 Identities=23% Similarity=0.319 Sum_probs=80.5
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVK 253 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvK 253 (439)
|..|.=+-+..-.+..++|.++|...+.....+....|..+.+..|..+|+.+.++|..+....++.+-.. +.
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~-~~------ 74 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK-SN------ 74 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-Hh------
Confidence 34455566777788999999999999999999999999999999999999999999999888777765321 11
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
+-+|=+-...|..+|.++-+-..++..-|..
T Consensus 75 -~E~l~rriq~LEeele~ae~~L~e~~ekl~e 105 (143)
T PF12718_consen 75 -AEQLNRRIQLLEEELEEAEKKLKETTEKLRE 105 (143)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1166666777778887777766666555543
No 130
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=76.25 E-value=1.5e+02 Score=34.07 Aligned_cols=130 Identities=25% Similarity=0.291 Sum_probs=91.1
Q ss_pred hhhhhHHHHHHHHHHHH----HHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhh
Q 039269 101 DQRLKLNRVLNNMQQRL----TAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQ 176 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl----~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tq 176 (439)
.|+-+|-..-.-|+ +| -+-++..|.|-|.|.-+..||.-|-.-.+ -||+.+...-++.+...--.
T Consensus 91 ~qkmrLe~qa~Ele-~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q---~ELee~q~~Hqeql~~Lt~a------- 159 (739)
T PF07111_consen 91 QQKMRLEAQAEELE-ALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQ---RELEEAQRLHQEQLSSLTQA------- 159 (739)
T ss_pred HHHhHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-------
Confidence 34444444444444 33 23456788898888888888877654443 47787777777665443222
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhh
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLEN-------LHKQHEESE 241 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~-------L~k~~~ElE 241 (439)
-|=.+..|+.|..++|..|++.+..++.....++.+-.|.++|+++|-.+++.|+. |.+-.++.-
T Consensus 160 Hq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~ 231 (739)
T PF07111_consen 160 HQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQV 231 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhC
Confidence 34455569999999999999998888888889999999999999999888776654 455555543
No 131
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=76.25 E-value=48 Score=31.68 Aligned_cols=114 Identities=23% Similarity=0.325 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHH---HHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 103 RLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQ---FLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 103 R~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~---fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
+..+...+.|+. -|..==-|...|.+|||.-..+|+ -+....|.+|.+++.-..
T Consensus 68 ~~~f~~~~~tl~-~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~---------------------- 124 (190)
T PF05266_consen 68 RSSFESLMKTLS-ELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEA---------------------- 124 (190)
T ss_pred HHHHHHHHHHHH-HHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 555555555553 244445678889999999999888 344444555555543311
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
++.++..+..++|.++-..+.........++....|...+.-+..++.+.+++..-++..
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122344455555555555555544445555555555555555555555555555544443
No 132
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=76.09 E-value=96 Score=31.63 Aligned_cols=182 Identities=16% Similarity=0.206 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhh----------hHHHHHHhhHhhHHHHHHHHHHhhhhh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKD----------LEVELETTSENCKENMQQAVLNEKERF 174 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkD----------LEveLettkqk~ke~lqQAvl~EREr~ 174 (439)
.+.+.|..+..-....+..-+..-..|+.|...-+=+-.|-.. +=.+|-+--++.+..|+||.-.=.
T Consensus 75 ~l~~~l~~l~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~g~~~Wtr~~S~~~~~~l~~~~~~~~~~L~~A~~sD~--- 151 (353)
T cd09236 75 RIRASLDDVARLAASDRAILEEAMDILDDEASEDESLRRKFGTDRWTRPDSHEANPKLYTQAAEYEGYLKQAGASDE--- 151 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhHH---
Confidence 3445666666666666666677777777777766666555542 344555556667777777754311
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhH-----h-------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERA-----R-------AESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~-----~-------~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
.+|+++...+-.|+-...... . ......+.+.....++.+|+.++.+=..+ .++++.
T Consensus 152 --------~v~~k~~~~~~~l~lL~~~~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~---~~~Lk~ 220 (353)
T cd09236 152 --------LVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRK---VERART 220 (353)
T ss_pred --------HHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 144444444444443322110 0 01123344555555666666555444433 344455
Q ss_pred ccccch--hHHHHHHHHHhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 243 KSKTDV--KLLVKEVKSLRSSQ-----------SEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKL 300 (439)
Q Consensus 243 kskad~--KvLvKEVKsLR~sq-----------~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~Kl 300 (439)
++++|- .+|+.+.+++.... .=..+||..|-.....++..+.+.......-+.++.+|
T Consensus 221 k~~~DDI~~~ll~~~~~~~~~~~~~~i~~~~fe~lf~~eL~kf~~~~~~l~~~~~~Q~~ll~~i~~~n~~f 291 (353)
T cd09236 221 KARADDIRPEILREAARLEREYPATEVAPAHFEDLFDKRLAKYDKDLDAVSEEAQEQEEILQQIEVANKAF 291 (353)
T ss_pred HHHhcCchHHHHHHHHhhhcccccccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666653 57777777664431 12344555555555566666655555555555555555
No 133
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.70 E-value=1.2e+02 Score=32.56 Aligned_cols=71 Identities=23% Similarity=0.296 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh---hccccchhHHHHHHHH--Hh---hh------hHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESE---VKSKTDVKLLVKEVKS--LR---SS------QSEVKQELSRLMKEKLE 278 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElE---akskad~KvLvKEVKs--LR---~s------q~elkqEl~~~~~eK~e 278 (439)
..+...+.+.++..+...+....++.+.- ++.-.++.-|+...|+ +. .. +.+|++|....-.+...
T Consensus 213 l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~ 292 (511)
T PF09787_consen 213 LRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQL 292 (511)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444 3333444444444444 22 01 45677777766666666
Q ss_pred HHHHH
Q 039269 279 VEGVL 283 (439)
Q Consensus 279 lE~~L 283 (439)
++.-|
T Consensus 293 l~~Qi 297 (511)
T PF09787_consen 293 LERQI 297 (511)
T ss_pred HHHHH
Confidence 66655
No 134
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.60 E-value=22 Score=35.98 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039269 218 MLLQELEVVREQLENLH 234 (439)
Q Consensus 218 ~l~qEL~~~r~~le~L~ 234 (439)
.+..|.++-..-++.++
T Consensus 20 ~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 20 QAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 135
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.09 E-value=23 Score=33.48 Aligned_cols=53 Identities=32% Similarity=0.478 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 215 ENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 215 e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
+.+.+..+++.+++.++.+.....+- .++..+..+.+.|+....+|++||..+
T Consensus 77 ~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 77 EIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443322222 456667777777777777777777744
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.07 E-value=1.3e+02 Score=32.56 Aligned_cols=75 Identities=19% Similarity=0.306 Sum_probs=41.1
Q ss_pred HHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHH
Q 039269 113 MQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETE 192 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E 192 (439)
+.+||-+.+-|.+-+-.+++.----+.=|-.-+|++|.++..+... +.+.+=+..+++++...++
T Consensus 36 ~~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~q---------------l~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 36 DDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQ---------------LIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhHHHHHHhhHHHHH
Confidence 3366777766655555555554444555666666666666554321 2233344555666666666
Q ss_pred HhhhhHHhhh
Q 039269 193 LKLKYEQDER 202 (439)
Q Consensus 193 ~~Lks~qdek 202 (439)
-.|+-.++.+
T Consensus 101 ~~l~~l~~q~ 110 (420)
T COG4942 101 ARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHH
Confidence 6555554444
No 137
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=74.53 E-value=86 Score=37.40 Aligned_cols=89 Identities=19% Similarity=0.239 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhh
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLL 340 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLL 340 (439)
+..+|.|.+.+...+..++.+-++.+-.+-.....+-..+=.-..-.+.|||+-+..+-. +.+++++
T Consensus 103 s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~---------~~~~~~~---- 169 (1109)
T PRK10929 103 STDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQT---------LGTPNTP---- 169 (1109)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhC---------CCCCCCc----
Confidence 468999999999999999988888875444332222222222225578888888765431 0112222
Q ss_pred hccchhHHHHHHHHhhhhhhhhh
Q 039269 341 TTSDNRIGLLVAETQLLAQDIER 363 (439)
Q Consensus 341 aTSDnRI~lLlAEaQlL~~d~E~ 363 (439)
.++.|...|-||.+.+......
T Consensus 170 -l~~a~~~~lqae~~~l~~~~~~ 191 (1109)
T PRK10929 170 -LAQAQLTALQAESAALKALVDE 191 (1109)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHH
Confidence 4456777787877777655543
No 138
>PRK01156 chromosome segregation protein; Provisional
Probab=74.30 E-value=1.6e+02 Score=33.22 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=40.5
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHH
Q 039269 99 PSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKE 161 (439)
Q Consensus 99 P~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke 161 (439)
|.+.+.-+.+++++= .+.++-..+.+.+..+..++.--+++-..+++++.+|+.....-.+
T Consensus 148 ~~~r~~~ld~~~~~~--~~~~~~~~~~~~~~~~~~ei~~le~~~~~l~~~e~eL~~~~~~i~e 208 (895)
T PRK01156 148 PAQRKKILDEILEIN--SLERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIAD 208 (895)
T ss_pred HHHHHHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666442 4445555566777777887777778878888888877665554443
No 139
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=73.20 E-value=35 Score=35.80 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
|+.-+|..-..+..+++... -... =...-+...+...+..+++.+|.+...++++....- +.+.+..-|..|+|.|+
T Consensus 3 D~k~ir~n~~~v~~~l~~R~-~~~~-vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~ 79 (425)
T PRK05431 3 DIKLIRENPEAVKEALAKRG-FPLD-VDELLELDEERRELQTELEELQAERNALSKEIGQAK-RKGEDAEALIAEVKELK 79 (425)
T ss_pred CHHHHHhCHHHHHHHHHhcC-Cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcHHHHHHHHHHHH
Confidence 34445555555555555441 0000 122334455666667777777777777777765522 22224444556666555
Q ss_pred hhhHHHHHHH
Q 039269 260 SSQSEVKQEL 269 (439)
Q Consensus 260 ~sq~elkqEl 269 (439)
....++++++
T Consensus 80 ~~~~~~~~~~ 89 (425)
T PRK05431 80 EEIKALEAEL 89 (425)
T ss_pred HHHHHHHHHH
Confidence 5444444433
No 140
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=73.03 E-value=83 Score=34.21 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEH 292 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~ 292 (439)
..|.+.+.+|.++-+..++-|.++.... +.+-|++|-+.|-.....|-|+|..+.++-.++-..|.+...+.+.
T Consensus 149 d~e~~~~~~e~~~Y~~~l~~Le~~~~~~------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~ 222 (447)
T KOG2751|consen 149 DKEVEDAEDEVDTYKACLQRLEQQNQDV------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAER 222 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777777777777777776665 7888999999999999999999999999999999998887776665
Q ss_pred HHHHHHHHHhHH
Q 039269 293 ADIANLKLLHEC 304 (439)
Q Consensus 293 ~~~ar~KllhEc 304 (439)
...--..+..|-
T Consensus 223 ~~e~~~~~~~ey 234 (447)
T KOG2751|consen 223 LNEEEDQYWREY 234 (447)
T ss_pred HHHHHHHHHHHH
Confidence 544333333333
No 141
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=72.70 E-value=30 Score=40.44 Aligned_cols=106 Identities=28% Similarity=0.292 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhhhH--Hhh-----hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-Hhhhhhh--hhccccchhH
Q 039269 181 MEELRKQLLETELKLKYE--QDE-----RARAESSKMSIIQENEMLLQELEVVREQLENL-HKQHEES--EVKSKTDVKL 250 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~--qde-----k~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L-~k~~~El--Eakskad~Kv 250 (439)
.++=+++..|||-.|.+- .-+ ....+.-+-..-.|++. ||.-.+.++-.| +++.++. ||.+| ..|-
T Consensus 924 ~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~da---eLe~~~ael~eleqk~le~~eDea~aR-h~ke 999 (1424)
T KOG4572|consen 924 IEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDA---ELEKEFAELIELEQKALECKEDEAFAR-HEKE 999 (1424)
T ss_pred HhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHH
Confidence 355677888888776432 111 11222333333333332 233333333332 3444444 34444 4678
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRM 290 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~ 290 (439)
+-+|.+.+|.+..++|+++.+...++.+++..+-+|++.+
T Consensus 1000 fE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~e 1039 (1424)
T KOG4572|consen 1000 FEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGE 1039 (1424)
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 8999999999999999999999999999999998877643
No 142
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.12 E-value=17 Score=32.89 Aligned_cols=65 Identities=26% Similarity=0.273 Sum_probs=32.7
Q ss_pred ccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 039269 243 KSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 243 kskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQ 312 (439)
=+..++..|-.|++.||....+++++.+.+-.+...+...+.-+. ....-..+-.||..|..||+
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~e-----l~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEE-----LREEIEELEEEIEELEEKLE 133 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555544443 22223334445555555554
No 143
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=72.11 E-value=1.4e+02 Score=34.48 Aligned_cols=127 Identities=24% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhh
Q 039269 182 EELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSS 261 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~s 261 (439)
+++-.+..+.+.+|+-.+....+.+....--.-....+...+..+|+++|+-.+-.++|.-.-|+=+|-.++|.|-+...
T Consensus 555 eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~ 634 (786)
T PF05483_consen 555 EELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVY 634 (786)
T ss_pred HHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039269 262 QSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILR 308 (439)
Q Consensus 262 q~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr 308 (439)
...+.+--..+-.-+...+...+.=...-+-..++-..|+.|+.-++
T Consensus 635 eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k 681 (786)
T PF05483_consen 635 EIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAK 681 (786)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
No 144
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=71.79 E-value=26 Score=33.04 Aligned_cols=143 Identities=18% Similarity=0.267 Sum_probs=71.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhchHH---------------HHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHH
Q 039269 102 QRLKLNRVLNNMQQRLTAAKADTED---------------LLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQA 166 (439)
Q Consensus 102 qR~KlnRvl~Tmq~Rl~taKTDmED---------------LiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQA 166 (439)
-|.-+-.+...|..+|...++..-. ||.-.-=+.+=|+.|--||+|= +-.|..+-+...+.+
T Consensus 31 tR~dVi~L~e~Ld~~L~~~~ar~~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde---~~~~l~~y~~l~~s~ 107 (189)
T PF10211_consen 31 TRQDVIQLQEWLDKMLQQRQARETGICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDE---YRMTLDAYQTLYESS 107 (189)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 4777777777888888877765432 2222222334477777777763 333333322222221
Q ss_pred HHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039269 167 VLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT 246 (439)
Q Consensus 167 vl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska 246 (439)
+- + -|...++.++ ++...+........+++.|..++..++...+.+.++..+. -..
T Consensus 108 ~~-------f-------------~~rk~l~~e~-~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~---~~~ 163 (189)
T PF10211_consen 108 IA-------F-------------GMRKALQAEQ-GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL---RQE 163 (189)
T ss_pred HH-------H-------------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 11 1 1111111111 1111122222223344444444444444444444433322 224
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHH
Q 039269 247 DVKLLVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 247 d~KvLvKEVKsLR~sq~elkqEl~~ 271 (439)
..|...-||.-|+.+..+|+.+|.+
T Consensus 164 ~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 164 EEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888999999999999888764
No 145
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=71.61 E-value=1.5e+02 Score=31.75 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=70.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHH
Q 039269 135 VAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQ 214 (439)
Q Consensus 135 ~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~ 214 (439)
+|.-+.|-+|++.+=..=|+.|+ + ||.+-.-|-||++|+-+.+.+=..|-.-++-=.......+-.-+
T Consensus 67 ~aa~~llq~kirk~~e~~eglr~-----------i-~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~ 134 (401)
T PF06785_consen 67 TAAGQLLQTKIRKITEKDEGLRK-----------I-RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEG 134 (401)
T ss_pred HHHHHHHHHHHHHHHhccHHHHH-----------H-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 46678889999888655555544 2 66777778999999988876644443332211111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 215 ENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 215 e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
=...+.+|=...+=||.+++++..|-|-.|. -|-+|..--++-|++|-.|-..-+.+
T Consensus 135 li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq----~LnrELaE~layqq~L~~eyQatf~e 191 (401)
T PF06785_consen 135 LIRHLREENQCLQLQLDALQQECGEKEEESQ----TLNRELAEALAYQQELNDEYQATFVE 191 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhHhHHHHH----HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 1222334444445566667777766655443 36667666666666666655544433
No 146
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=71.52 E-value=27 Score=28.53 Aligned_cols=60 Identities=23% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
.||..+-.+..++...+....+.-....++.....+.-.+...++.+++.|.++.++..+
T Consensus 9 ~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 9 TLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 467777777777777776666666666666666666666677777777777766655543
No 147
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=70.64 E-value=2.5e+02 Score=34.01 Aligned_cols=155 Identities=9% Similarity=0.085 Sum_probs=86.9
Q ss_pred HhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHH---HH-----HHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhh
Q 039269 130 RLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQ---AV-----LNEKERFTQMQWDMEELRKQLLETELKLKYEQDE 201 (439)
Q Consensus 130 RLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQ---Av-----l~EREr~tqmQWdmeElr~k~~e~E~~Lks~qde 201 (439)
++...-.--..-..+|..+...++......+.--++ |. -...+.+.+..=.++++++.+..+.........-
T Consensus 794 ~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A 873 (1353)
T TIGR02680 794 RAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHA 873 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444455555555555544443332222 11 1224556665556777777777777766655332
Q ss_pred hH---hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039269 202 RA---RAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLE 278 (439)
Q Consensus 202 k~---~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~e 278 (439)
.. ......+.+.+..+...+++..+++++..+..++..++....+.+.-|-.++..+|.....+.+++...-++...
T Consensus 874 ~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~ 953 (1353)
T TIGR02680 874 ATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALAT 953 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 223334444555556666666666666666777777777766666666666677776666666666666666655
Q ss_pred HHHHHH
Q 039269 279 VEGVLQ 284 (439)
Q Consensus 279 lE~~L~ 284 (439)
++.-+.
T Consensus 954 a~~~~~ 959 (1353)
T TIGR02680 954 AEEARG 959 (1353)
T ss_pred HHHHHH
Confidence 554443
No 148
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=70.59 E-value=51 Score=34.58 Aligned_cols=85 Identities=24% Similarity=0.254 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc-hhHHHHHHHHH
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTD-VKLLVKEVKSL 258 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad-~KvLvKEVKsL 258 (439)
|+.-+|..-..+..+++..--.....-........+...+..|++.+|.+...++++....- +.+.+ ..-|..++|.|
T Consensus 3 Dik~ir~n~~~v~~~l~~R~~~~~~~vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~-~~~~~~~~~l~~~~~~l 81 (418)
T TIGR00414 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK-GQKKDKIEEIKKELKEL 81 (418)
T ss_pred CHHHHHhCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 44445555555555555442100000122333444455555556665555555555554421 11222 33444445544
Q ss_pred hhhhHHH
Q 039269 259 RSSQSEV 265 (439)
Q Consensus 259 R~sq~el 265 (439)
+....++
T Consensus 82 ~~~~~~~ 88 (418)
T TIGR00414 82 KEELTEL 88 (418)
T ss_pred HHHHHHH
Confidence 4443333
No 149
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=70.29 E-value=95 Score=29.02 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELR 185 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr 185 (439)
++||-..+...+--+=-.+||=..-|+| .++|++..|...++.....+......||+. +++.
T Consensus 3 f~Rl~~~~~a~~~~~ld~~EDP~~~l~q----------~ird~e~~l~~a~~~~a~~~a~~~~le~~~--------~~~~ 64 (221)
T PF04012_consen 3 FKRLKTLVKANINELLDKAEDPEKMLEQ----------AIRDMEEQLRKARQALARVMANQKRLERKL--------DEAE 64 (221)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH
Confidence 3455554444444444444443344444 357888888888888777777777776653 4466
Q ss_pred HHHHHHHHhhhh
Q 039269 186 KQLLETELKLKY 197 (439)
Q Consensus 186 ~k~~e~E~~Lks 197 (439)
+...+++.+...
T Consensus 65 ~~~~~~~~~A~~ 76 (221)
T PF04012_consen 65 EEAEKWEKQAEL 76 (221)
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 150
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.42 E-value=28 Score=31.55 Aligned_cols=53 Identities=32% Similarity=0.403 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhhhHHhhh--HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 183 ELRKQLLETELKLKYEQDER--ARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek--~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
+|+.++.+.+..++..+.+- ....++...+..+...|.+|+..+...|+.|..
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444433222 244455566677777777777777777777765
No 151
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=69.08 E-value=76 Score=38.62 Aligned_cols=116 Identities=21% Similarity=0.271 Sum_probs=87.0
Q ss_pred HHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHH---HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 165 QAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQ---ENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 165 QAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~---e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
+|..-=++-=|+ |+.|.-|.|..|+-..+-+..+...++++.. +-+..+++++.-++.+++|-++..+|-
T Consensus 1412 ~A~~~A~~~~~~-------l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li~~v~~Fl 1484 (1758)
T KOG0994|consen 1412 GALLMAGDADTQ-------LRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLIQQVRDFL 1484 (1758)
T ss_pred hHHHHhhhHHHH-------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444443444455 8999999999999888888888777777643 445667888888888888888888887
Q ss_pred hccccc---h-----hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 242 VKSKTD---V-----KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 242 akskad---~-----KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
-+-.|| | +||.+|++.==.+...|--++.+...-...++.||++=+
T Consensus 1485 t~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~ 1538 (1758)
T KOG0994|consen 1485 TQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTK 1538 (1758)
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhh
Confidence 776665 3 466666666667777888888888888888899988766
No 152
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.96 E-value=1.5e+02 Score=30.72 Aligned_cols=116 Identities=18% Similarity=0.313 Sum_probs=69.1
Q ss_pred hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHH
Q 039269 173 RFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLV 252 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLv 252 (439)
-+.-+.=..++++.+..++=.+++.+-++-...-..+.. +.++.|.+|+.-.-++.++.++- +.++-+-
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k-------~~~~~De~Rkeade~he~~ve~~----~~~~e~~ 227 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIK-------LFEEADELRKEADELHEEFVELS----KKIDELH 227 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH
Confidence 334444456667777777777777775554333333333 44444444444444444444332 2344567
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 253 KEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKL 300 (439)
Q Consensus 253 KEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~Kl 300 (439)
.|++.+.+...++.+.+..+......+...--.| .-.+.+.....||
T Consensus 228 ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~e-e~kera~ei~EKf 274 (294)
T COG1340 228 EEFRNLQNELRELEKKIKALRAKEKAAKRREKRE-ELKERAEEIYEKF 274 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 7888888888888888887777766666555444 2334566666666
No 153
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=68.79 E-value=2.4e+02 Score=33.06 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhH
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMS----------IIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKL 250 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s----------~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~Kv 250 (439)
++.+|.....++..+...+..-...+..... .....+.+.+++..+++.+..+.+++..+..+-+.
T Consensus 779 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~---- 854 (1047)
T PRK10246 779 LTQLEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQ---- 854 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4556777777777666554322211111000 01123345555555555555555555555443322
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLM---KEKLEVEGVL 283 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~---~eK~elE~~L 283 (439)
.+..+.....+.+++.+.. ..+..|.+++
T Consensus 855 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 886 (1047)
T PRK10246 855 ----DADNRQQQQALMQQIAQATQQVEDWGYLNSLI 886 (1047)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444443333 3444455554
No 154
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.59 E-value=40 Score=28.89 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 161 ENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 161 e~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
...||||=+ |+-+|-.+|||..|........+.. .+......++|+.|++|...-++.+-.|--..+
T Consensus 11 ~KIqqAvdt----I~LLqmEieELKekn~~L~~e~~~~-------~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 11 AKVQQAIDT----ITLLQMEIEELKEKNNSLSQEVQNA-------QHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456888855 9999999999998877766655544 344556788888999888888888877754443
No 155
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.74 E-value=43 Score=36.21 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
.++.+-...|.+=...+.+|+|.|.++.+..--+.++ .+|+.-++ -.-.|++ +|++
T Consensus 229 t~~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~-------~~k~g~K~------iA~~ylr-----------~rk~ 284 (439)
T KOG2911|consen 229 TEIDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQ-------ALKEGKKQ------IAITYLR-----------ARKL 284 (439)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcchH------HHHHHHH-----------HHHH
Confidence 3445555566666777778888888777655433322 22222111 1123333 3444
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhh-hh--ccchhHHHHHHHHhhhhhhhhhhhc
Q 039269 290 MEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDL-LT--TSDNRIGLLVAETQLLAQDIERSMT 366 (439)
Q Consensus 290 ~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldL-La--TSDnRI~lLlAEaQlL~~d~E~~~~ 366 (439)
.|+-...+..++|-+.-+..++-.---|-. +..--++.+.|+.. |+ .+++.+.-+|+|++-...-.++..+
T Consensus 285 ~eK~~er~~~~l~~l~~vl~~Id~s~~nkv------vl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~ 358 (439)
T KOG2911|consen 285 LEKDLERKVSSLNNLETVLSQIDNSQTNKV------VLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETLDRQEEVED 358 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhcccHH------HHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHH
Confidence 455555566677777766666644322221 22222346777765 44 6889999999999988777776655
Q ss_pred ccccccCCCCCCCccHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHh
Q 039269 367 GLDKTCNANGSDRRSDDELRQMLTDIFIDNAR---LRMQVNTVIRCALN 412 (439)
Q Consensus 367 ~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~---LRkqvNSv~R~Al~ 412 (439)
...+.. .++.+. -|+++-|=|=|+.-|+.. +--=.|+..|.-++
T Consensus 359 ~la~~~-~~~~d~-~de~lEkEL~~L~~D~~k~e~~~lp~~~~sr~~~~ 405 (439)
T KOG2911|consen 359 ALASYN-VNNIDF-EDEDLEKELEDLEADEKKNEDLVLPLNSVSRDFLK 405 (439)
T ss_pred HHhcCC-CCCCcc-chHHHHHHHHHHHhccccCCccCCCCCCchHHHhh
Confidence 544433 233333 688888888898888766 33345555565553
No 156
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=67.34 E-value=1.6e+02 Score=30.58 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhHHHHHHhhHhh
Q 039269 136 AVRQFLTTKVKDLEVELETTSENC 159 (439)
Q Consensus 136 AVk~fL~tKVkDLEveLettkqk~ 159 (439)
+..+||...++.++.+|+....+-
T Consensus 161 ~~~~fl~~ql~~~~~~L~~ae~~l 184 (498)
T TIGR03007 161 SAQRFIDEQIKTYEKKLEAAENRL 184 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567787777777777666554433
No 157
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=67.17 E-value=84 Score=29.74 Aligned_cols=60 Identities=33% Similarity=0.528 Sum_probs=35.5
Q ss_pred hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 173 RFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
++..++=+++.++.+..+.+..+.....++... .+...++++|..++++++.|++++..+
T Consensus 70 ~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~--------~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 70 KLEKLQKEIEELEKKIEELEEKIEEAKKGREES--------EEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555543222211 677778888888888888888776633
No 158
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=67.01 E-value=2.2e+02 Score=31.96 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=21.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
-|.|..+..+|+.-.-..-.+|.++.-.|+-|...
T Consensus 162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~ 196 (617)
T PF15070_consen 162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHV 196 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Confidence 34555555555555555666777777777766644
No 159
>PLN02678 seryl-tRNA synthetase
Probab=66.72 E-value=58 Score=34.90 Aligned_cols=59 Identities=24% Similarity=0.308 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqE 268 (439)
.-+...+.-.+..+++.+|.+-..++++...+ .+.+.+..-|..|+|.|+.....+.++
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~ 93 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAE 93 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666553 233445555566666555444333333
No 160
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.60 E-value=2.5e+02 Score=32.48 Aligned_cols=181 Identities=20% Similarity=0.251 Sum_probs=83.8
Q ss_pred hHHHHHHhhHHHHHH-H------HHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHH-----------HH
Q 039269 124 TEDLLARLNQEVAVR-Q------FLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEE-----------LR 185 (439)
Q Consensus 124 mEDLiaRLnQE~AVk-~------fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeE-----------lr 185 (439)
..||+.+|-+++-|= | -|-.++.++.+-|+-....|. .+|. |.+++.-|...-+-+.. -.
T Consensus 511 IsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~-SLqD-v~s~~sEIK~~f~~~ss~e~E~~~~dea~~ 588 (769)
T PF05911_consen 511 ISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCF-SLQD-VSSMRSEIKKNFDGDSSSEAEINSEDEADT 588 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccc-hHHH-HHHHHHHHHHhhhhcccccccccchHHHHH
Confidence 377777777776542 2 333455556666666555543 3333 77777666653332222 12
Q ss_pred HHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh---hhccccchhHHHHHHHHHhhhh
Q 039269 186 KQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES---EVKSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 186 ~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El---Eakskad~KvLvKEVKsLR~sq 262 (439)
..+.+.+.+|.....++.-.+....+...+.+.+..+|.-..+.++.|+.+...+ ....-.+++...--.++|=...
T Consensus 589 ~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~ 668 (769)
T PF05911_consen 589 SEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRL 668 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2233334444444444444444444444444444444444444433333333211 1111111122211122333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 263 SEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 263 ~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
..++.|+.+....-..||.=|.+||.- -..+.-.|.-|...|+-
T Consensus 669 ~~~e~E~~~l~~Ki~~Le~Ele~er~~-------~~e~~~kc~~Le~el~r 712 (769)
T PF05911_consen 669 KDLEAEAEELQSKISSLEEELEKERAL-------SEELEAKCRELEEELER 712 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhHHHHHHHHHHh
Confidence 344455555555555566666666643 33445567777776654
No 161
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=66.55 E-value=39 Score=31.54 Aligned_cols=91 Identities=22% Similarity=0.279 Sum_probs=72.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhh----chHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKA----DTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQ 176 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKT----DmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tq 176 (439)
+|=.-|.|.|.|..=|-...++ ...+|-.+|++----..=|..+|.+.|..|++.-.-.+..+|+.|..=--|.+-
T Consensus 77 ~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~R 156 (173)
T PF07445_consen 77 AQIEALQRELATQSLRKKESKPSSRKPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQR 156 (173)
T ss_pred HHHHHHHHHHHhccCccCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665545444444 568888999888777777999999999999998877999999999987888888
Q ss_pred hhccHHHHHHHHHHHHHhhhhH
Q 039269 177 MQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~ 198 (439)
||.+...+|..|...
T Consensus 157 -------Cr~Ai~~iE~~I~~~ 171 (173)
T PF07445_consen 157 -------CRQAIEKIEEQIQRR 171 (173)
T ss_pred -------HHHHHHHHHHHHHHH
Confidence 999999999988654
No 162
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.46 E-value=1.7e+02 Score=30.44 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
--|..=+..-+.+|..|..||..+-..-.++-..|++
T Consensus 258 EeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 258 EELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555667777777766554444466666654
No 163
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.11 E-value=3.2e+02 Score=33.48 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
.+....+.+.+..|++++.+.++.+.+..++.-
T Consensus 435 pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~ 467 (1293)
T KOG0996|consen 435 PEKARIEIQKCQTEIEQLEELLEKEERELDEIL 467 (1293)
T ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555555555544443
No 164
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=66.08 E-value=48 Score=30.60 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
..|.+....|+++.++|.+.|+++|+
T Consensus 167 k~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 167 KKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34444466677777888888888775
No 165
>PRK09343 prefoldin subunit beta; Provisional
Probab=65.96 E-value=94 Score=27.41 Aligned_cols=41 Identities=22% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 231 ENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 231 e~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
.++.++.+-++ .++|.|-|--+.|+.+..++...+.+++..
T Consensus 74 ~~l~~r~E~ie----~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 74 KELKERKELLE----LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555 677778888888888887777777766543
No 166
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=65.87 E-value=1.2e+02 Score=28.53 Aligned_cols=82 Identities=16% Similarity=0.213 Sum_probs=62.9
Q ss_pred HHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh-hhhHHHHHHHH
Q 039269 192 ELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR-SSQSEVKQELS 270 (439)
Q Consensus 192 E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR-~sq~elkqEl~ 270 (439)
+..+.+.+++|..+-.-.+++..|.+.+.+||..++.++...-.+-+.++.+.+.-++-|+.==|.+. =+..++|+--.
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 44677778888888888899999999999999999999999999999999888887777765444442 24455555444
Q ss_pred HHH
Q 039269 271 RLM 273 (439)
Q Consensus 271 ~~~ 273 (439)
++.
T Consensus 85 ~A~ 87 (159)
T PF05384_consen 85 EAH 87 (159)
T ss_pred HHH
Confidence 443
No 167
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=65.38 E-value=1e+02 Score=36.14 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=28.6
Q ss_pred hchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhH
Q 039269 122 ADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCK 160 (439)
Q Consensus 122 TDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~k 160 (439)
-.|.++++|||- -|+=.+.-+++++.+|++...+-|
T Consensus 850 ~k~~ei~s~lke---~r~e~~~~~~~~~~~id~lv~~IK 885 (1259)
T KOG0163|consen 850 LKTIEILSRLKE---GREEIISGANSTYRQIDDLVKKIK 885 (1259)
T ss_pred HHHHHHHHHHhc---chHHHHhhhhhHHHHHHHHHHHhc
Confidence 358899999997 566677888899999988877665
No 168
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=65.19 E-value=2.1 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhHHHHHHhhH
Q 039269 136 AVRQFLTTKVKDLEVELETTSE 157 (439)
Q Consensus 136 AVk~fL~tKVkDLEveLettkq 157 (439)
-.|-.|..++.+++..++..+.
T Consensus 321 eaKKkL~~~L~el~e~le~~~~ 342 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANA 342 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 169
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.17 E-value=1.7e+02 Score=33.31 Aligned_cols=6 Identities=50% Similarity=0.484 Sum_probs=2.3
Q ss_pred HHHHHH
Q 039269 161 ENMQQA 166 (439)
Q Consensus 161 e~lqQA 166 (439)
+-+-||
T Consensus 539 ~lL~~a 544 (717)
T PF10168_consen 539 ELLSQA 544 (717)
T ss_pred HHHHHH
Confidence 333343
No 170
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=64.57 E-value=48 Score=29.43 Aligned_cols=65 Identities=34% Similarity=0.420 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 161 ENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 161 e~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
.+|-.||++|....+. |+..+.+-|..|.-. .+|++.|-=--+++-+-++.|+.+.+..
T Consensus 15 ~vLKKaVieEQ~k~~~-------L~e~Lk~ke~~LRk~--------------eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAE-------LKEQLKEKEQALRKL--------------EQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999888876 555555555555444 3333333333334444555555555555
Q ss_pred hhcccc
Q 039269 241 EVKSKT 246 (439)
Q Consensus 241 Eakska 246 (439)
+.+++.
T Consensus 74 ~~~~~k 79 (102)
T PF10205_consen 74 EQKSKK 79 (102)
T ss_pred hccccc
Confidence 444443
No 171
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=64.21 E-value=77 Score=25.76 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=21.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 258 LRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 258 LR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
|......+.+.+.+...--..++.+|.+. .-..||.....+..|+++
T Consensus 77 l~~q~~~l~~~l~~l~~~~~~~e~~l~~~---------~~~e~L~~~~~i~~rl~~ 123 (127)
T smart00502 77 LEQQLESLTQKQEKLSHAINFTEEALNSG---------DPTELLLSKKLIIERLQN 123 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CChHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444331 223455555566666654
No 172
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.70 E-value=3.3e+02 Score=32.81 Aligned_cols=86 Identities=28% Similarity=0.329 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHhhhhhhhhhccHHHHHHHHHH----------HHHhhhhHHhh------------hHhhhhhhhhhHHHH
Q 039269 159 CKENMQQAVLNEKERFTQMQWDMEELRKQLLE----------TELKLKYEQDE------------RARAESSKMSIIQEN 216 (439)
Q Consensus 159 ~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e----------~E~~Lks~qde------------k~~~e~~~~s~~~e~ 216 (439)
-.+.||+-|..=.||+-.|--|+|=|+....+ ||.+-=..||. .++..-..+-+.-|.
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kel 405 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKEL 405 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34677777777777777777777777753321 22222222222 223333344556677
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039269 217 EMLLQELEVVREQLENLHKQHEESEVKS 244 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ElEaks 244 (439)
++...|+..++.+-|.|+.+.+..|++.
T Consensus 406 E~k~sE~~eL~r~kE~Lsr~~d~aEs~i 433 (1243)
T KOG0971|consen 406 EKKNSELEELRRQKERLSRELDQAESTI 433 (1243)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777778888888887777653
No 173
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=63.42 E-value=1.4e+02 Score=28.45 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhh---------
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQ--------- 176 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tq--------- 176 (439)
|+-.+--|+.-|..|+...-.++|.--+...=-+=+...+.+++.--..--+++.|.|-..++.++..+..
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~ 108 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALEREL 108 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777777777644333333334455667777777777788888888888877655433
Q ss_pred --hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHH---HH-HHHHHHHHHHHHHHhhhhhhhhccccch--
Q 039269 177 --MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEM---LL-QELEVVREQLENLHKQHEESEVKSKTDV-- 248 (439)
Q Consensus 177 --mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~---l~-qEL~~~r~~le~L~k~~~ElEakskad~-- 248 (439)
++=-.+.|..++.+|+.++.....-+...-.....+.....+ +- --...+-..|+-+......+||.+.+.-
T Consensus 109 ~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~~ 188 (219)
T TIGR02977 109 AAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDLG 188 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 222344455555555555544433333111111111111110 00 0123334556666666666666665542
Q ss_pred --hHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 249 --KLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 249 --KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
.-|-+|+..|-. ......+|..+
T Consensus 189 ~~~~l~~~l~~l~~-~~~vd~eLa~L 213 (219)
T TIGR02977 189 RKPSLEDEFAELEA-DDEIERELAAL 213 (219)
T ss_pred CCCCHHHHHHHhcC-CChHHHHHHHH
Confidence 225566666642 23444444443
No 174
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=63.34 E-value=2.5e+02 Score=31.36 Aligned_cols=57 Identities=18% Similarity=0.363 Sum_probs=33.2
Q ss_pred eeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 95 LLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 95 ~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.|-+-..-..+-.+|++++=.....- .+-.|..+.....+||...+..|+.+|++..
T Consensus 231 ~Is~~~~dP~~Aa~ilN~la~~Yi~~-----~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE 287 (726)
T PRK09841 231 ELTMTGDDPQLITRILNSIANNYLQQ-----NIARQAAQDSQSLEFLQRQLPEVRSELDQAE 287 (726)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666677777765555432 2233434444457788777777776666553
No 175
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=62.98 E-value=2.5e+02 Score=31.79 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAES 207 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~ 207 (439)
++..+..+.+++..|+..+.++...+.
T Consensus 191 l~~v~~~~~~~~~~l~~~~~~~~~l~~ 217 (670)
T KOG0239|consen 191 LEHVTNSISELESVLKSAQEERRVLAD 217 (670)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333444555555555555444444443
No 176
>PRK10698 phage shock protein PspA; Provisional
Probab=62.61 E-value=1.5e+02 Score=28.63 Aligned_cols=162 Identities=17% Similarity=0.271 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhh-----------
Q 039269 109 VLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQM----------- 177 (439)
Q Consensus 109 vl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqm----------- 177 (439)
++--|+.=++.+++..-.++|.--+...=-+=+...+.+++.--..--++++|.|-...|.++..+...
T Consensus 32 ~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~ 111 (222)
T PRK10698 32 MIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLV 111 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443322222222223334445555555566677788888877777665431
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH-----HHHHHHHHHHHHhhhhhhhhccccc----h
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE-----LEVVREQLENLHKQHEESEVKSKTD----V 248 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE-----L~~~r~~le~L~k~~~ElEakskad----~ 248 (439)
+=-.+.|..++..|+.++......+...--...++.....+ .+- ....-..|+.+....++.|+++.|. .
T Consensus 112 ~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~-~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~ 190 (222)
T PRK10698 112 DETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDV-RRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFGKQ 190 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 11223333444444444443333222222222221111111 111 1122356777778888888887774 1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
+-|-.|+..|.. ...+..||..+
T Consensus 191 ~~l~~e~~~le~-~~~ve~ELa~L 213 (222)
T PRK10698 191 KSLDQQFAELKA-DDEISEQLAAL 213 (222)
T ss_pred CCHHHHHHHhhc-cchHHHHHHHH
Confidence 236666666643 23455555443
No 177
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=62.18 E-value=1.6e+02 Score=28.82 Aligned_cols=92 Identities=18% Similarity=0.213 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
++++|+.-+.+.|..-++........|...+++..+.+.|.+|-..+.-..+-+++++.+|=. -++..++-+=++.+|-
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~-~~~~Lq~Ql~~~e~l~ 146 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT-EKATLQRQLCEFESLI 146 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH-hhHHHHHHHHHHHHHH
Confidence 578899999999999999988888999999999999999999999999999999998888855 4567777777888887
Q ss_pred hhhHHHHHHHHHH
Q 039269 260 SSQSEVKQELSRL 272 (439)
Q Consensus 260 ~sq~elkqEl~~~ 272 (439)
+.--.+-.|..+.
T Consensus 147 ~~~da~l~e~t~~ 159 (193)
T PF14662_consen 147 CQRDAILSERTQQ 159 (193)
T ss_pred HHHHHHHHHHHhh
Confidence 6654444444433
No 178
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=62.00 E-value=3e+02 Score=31.74 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=58.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE 286 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E 286 (439)
.....+..|...|..||+.++..+..+..+|.+--.+.++++.-|...+-++=.+-.+-++.+..+-++...+-.+...=
T Consensus 359 ~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~ 438 (717)
T PF09730_consen 359 CKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGES 438 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34445566667777777777777776666665544444555544444444443322111222333333322222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 287 KQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 287 kq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
...--.|+..-.-|-.|.+-|+..+==||-.
T Consensus 439 q~~LnsAQDELvtfSEeLAqLYHHVC~cNge 469 (717)
T PF09730_consen 439 QGSLNSAQDELVTFSEELAQLYHHVCMCNGE 469 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 2223345666677788999999888777643
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.46 E-value=1.7e+02 Score=28.85 Aligned_cols=63 Identities=16% Similarity=0.271 Sum_probs=40.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
+.+|.--|...-+..-.||-+...++..+|.++..=+.-.++....=..+++|+.-|.+.+-+
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~ 99 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINE 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666777888888888888888554433333444446667788777766543
No 180
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=61.27 E-value=50 Score=26.72 Aligned_cols=48 Identities=21% Similarity=0.356 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSE 264 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~e 264 (439)
+.=++.+.+||..++.-.-.+..++.+.|.+.+ -|-.||+.|+....+
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~----eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNR----ELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 666677777777777777777777777666543 355555555544433
No 181
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=61.18 E-value=1.3e+02 Score=27.18 Aligned_cols=59 Identities=14% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 185 RKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 185 r~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
...-.+++..|.+.+.+--....+-...+.+++.|..-+..++.|-.++.++..+|+|+
T Consensus 8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqak 66 (107)
T PF09304_consen 8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAK 66 (107)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555444333333444446667777777777777777777776666654
No 182
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.93 E-value=73 Score=27.19 Aligned_cols=68 Identities=26% Similarity=0.323 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 158 NCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 158 k~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
|-....||||=+ ||-+|-++|||..|...+- .+-..+.........||+.|.+|-..-++-+-+|--.
T Consensus 8 kLE~KiqqAvdT----I~LLQmEieELKEknn~l~-------~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 8 KLEAKVQQAIDT----ITLLQMEIEELKEKNNSLS-------QEVQNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHhhHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667899866 9999999999987765432 2333333344455667777777766666666665433
No 183
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=60.87 E-value=1.6e+02 Score=28.19 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLAR 130 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaR 130 (439)
|+.=+..|..+....+..|.++.+.
T Consensus 32 LKeei~emkk~e~~~~k~m~ei~~e 56 (201)
T PF13851_consen 32 LKEEIAEMKKKEERNEKLMAEISQE 56 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 184
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=59.75 E-value=1.1e+02 Score=26.16 Aligned_cols=91 Identities=22% Similarity=0.240 Sum_probs=59.8
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEV 255 (439)
..++++.++..=+.++|..|++..... .-........+.+.+..++...+..++.+......|-.....+...+...|
T Consensus 4 ~f~~~~~~l~~Wl~~~e~~l~~~~~~~--d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~ 81 (213)
T cd00176 4 QFLRDADELEAWLSEKEELLSSTDYGD--DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERL 81 (213)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 467788888888999999998875433 333455556666777777777777777777776666665555555555555
Q ss_pred HHHhhhhHHHHHH
Q 039269 256 KSLRSSQSEVKQE 268 (439)
Q Consensus 256 KsLR~sq~elkqE 268 (439)
..|...-..|.+.
T Consensus 82 ~~l~~~w~~l~~~ 94 (213)
T cd00176 82 EELNQRWEELREL 94 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
No 185
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.69 E-value=3.9e+02 Score=32.42 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhhhHHh---hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHH
Q 039269 182 EELRKQLLETELKLKYEQD---ERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSL 258 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qd---ek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsL 258 (439)
+.++..+.+|...+...+. .-............+.+.+.+.++..++.+..+.+++.+..++..+=...+-..+..|
T Consensus 847 ~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel 926 (1353)
T TIGR02680 847 EAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEI 926 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444422 1222333344445555555566666666666666666666655555445554457777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 259 RSSQSEVKQELSRLMKEKLEVEGVLQKEKQR 289 (439)
Q Consensus 259 R~sq~elkqEl~~~~~eK~elE~~L~~Ekq~ 289 (439)
.....++.++|....++...+++.+..=++.
T Consensus 927 ~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~ 957 (1353)
T TIGR02680 927 RARLAETRAALASGGRELPRLAEALATAEEA 957 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888888888887777665443333
No 186
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=59.55 E-value=1.1e+02 Score=27.62 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
+..++++..|+....+|.+.....+
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~L 88 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLL 88 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655444
No 187
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.39 E-value=1.1e+02 Score=34.89 Aligned_cols=12 Identities=25% Similarity=0.515 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 039269 398 RLRMQVNTVIRC 409 (439)
Q Consensus 398 ~LRkqvNSv~R~ 409 (439)
.||+.|...++.
T Consensus 735 ~Lr~~v~~~L~~ 746 (771)
T TIGR01069 735 KLRKGVQELLKN 746 (771)
T ss_pred HHHHHHHHHhcC
Confidence 355555555544
No 188
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=59.25 E-value=3.1 Score=47.13 Aligned_cols=208 Identities=23% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHH
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQ 187 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k 187 (439)
|+-..++.==.....+..||.+-|-+....|.=.-.++|.||..|...+.+.-+.-.+.-=. ....+.++=++.+|-++
T Consensus 145 k~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el-~~~k~kL~~E~~eL~~q 223 (859)
T PF01576_consen 145 KQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNEL-TEQKAKLQSENSELTRQ 223 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33333333334445677889999988888888888889999999998887765543322111 23445566677777777
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccccc--hhHHHHHHHH
Q 039269 188 LLETELKLKYEQDERARAESSKMSII-------QENEMLLQELEVVREQLENLHKQHE-ESEVKSKTD--VKLLVKEVKS 257 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~-------~e~~~l~qEL~~~r~~le~L~k~~~-ElEakskad--~KvLvKEVKs 257 (439)
+.+.|.++....-.+...+.....+. ..+..|...+..+...++.|..+++ +-++++..+ +.-+--||..
T Consensus 224 Lee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~ 303 (859)
T PF01576_consen 224 LEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQ 303 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHH
Confidence 77777776666544444443333222 2222333333333444444444444 223333322 2233445555
Q ss_pred HhhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcc
Q 039269 258 LRSSQSE--------VKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSV 316 (439)
Q Consensus 258 LR~sq~e--------lkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~ 316 (439)
+|+.... |..-...+.....+++.-+-.-+.+.....-++.+|-.||.-++--|...+.
T Consensus 304 ~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~ 370 (859)
T PF01576_consen 304 WKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQA 370 (859)
T ss_dssp -------------------------------------------------------------------
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443322 1111122223334444455555555556666777788888877777765553
No 189
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=59.14 E-value=2.1e+02 Score=29.07 Aligned_cols=122 Identities=15% Similarity=0.247 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhh---------hhHHHHHHhhHhhHHHHHHHHHHhhhhhh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVK---------DLEVELETTSENCKENMQQAVLNEKERFT 175 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVk---------DLEveLettkqk~ke~lqQAvl~EREr~t 175 (439)
.+.+.|..+..-....+.--+.....|+.|...-+=+-.|-. .+=..|-+--.+-++.++||.-.=.
T Consensus 73 ~l~~~l~~L~~l~~~~~~~L~e~~~~Ld~E~~ed~~~R~k~g~~Wtr~pS~~~~~~l~~~~~kyr~~L~~A~~sD~---- 148 (339)
T cd09235 73 TIDQLIKELPELLQRNREILDEALRMLDEEEASDNQLRAQFKERWTRTPSNKLTKPLRAEGSKYRTILDNAVQADK---- 148 (339)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCcCCCCChHHHhHHHHHHHHHHHHHHHHHHhhHH----
Confidence 344556666666666666667777788888777666666653 2444555556677777777764421
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHh-----------hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERAR-----------AESSKMSIIQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~-----------~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
.+++++...+..|+-....... ..+...+++.....++.+|+.++.+=+.+-++.
T Consensus 149 -------~v~~k~~~~~~~l~lLs~~~~~l~~~lPss~~~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~~L 214 (339)
T cd09235 149 -------IVREKYESHREGIELLSKPEEELANAIPSASPAKTLQGSEAVQELRQLMEQVETIKAEREVIESEL 214 (339)
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHhCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2445555555544444221111 111234456777777777777766666553333
No 190
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=59.00 E-value=4.4e+02 Score=32.74 Aligned_cols=126 Identities=20% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 160 KENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 160 ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
.++||+-.-.=|++-+-++=-||+.+..+.+-+.....-++---.+.....-+.+-.....++..++.+-+-+..++..+
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e 1623 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE 1623 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666555555777777777888888887777766665554444444444444444555556666665555555555555
Q ss_pred hhh----------ccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 240 SEV----------KSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 240 lEa----------kskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
||. |--++-|-.-|+|-+-..+-+.-+|.+..+-+.-.-++++|.+
T Consensus 1624 L~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~ 1679 (1758)
T KOG0994|consen 1624 LETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEK 1679 (1758)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 553 3335566777778888888888888888433333334444443
No 191
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.96 E-value=1.8e+02 Score=28.13 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
......|...|.+++..+..+++.|......
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~ 74 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEVYNEQ 74 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555666666665555555544333
No 192
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.84 E-value=1.4e+02 Score=26.56 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=52.3
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHh
Q 039269 125 EDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERAR 204 (439)
Q Consensus 125 EDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~ 204 (439)
|+|...+..-.+=-++|...+..|+..++...++.. .-.++.++ +..++...+.++|.+.++-..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~--------~~~~~~~~-------l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA--------SAEEKERQ-------LQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444456778888888777776655443 11233444 677777888888888666555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 205 AESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 205 ~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
.....+++..+ +.-|+...-.+++.|+++
T Consensus 120 lk~~~~~~~tq---~~~e~rkke~E~~kLk~r 148 (151)
T PF11559_consen 120 LKNQLQQRKTQ---YEHELRKKEREIEKLKER 148 (151)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55444444332 233343444444444444
No 193
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=57.79 E-value=1.4e+02 Score=33.82 Aligned_cols=84 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQS 263 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~ 263 (439)
|+.+...++...++. ..+++.+..|+..++.+++.+..+.. .+..-.-++..+-.++-.|+...+
T Consensus 427 ~~~~ve~l~~e~~~L--------------~~~~ee~k~eie~L~~~l~~~~r~~~-~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 427 LEETVERLEEENSEL--------------KRELEELKREIEKLESELERFRREVR-DKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555554 33333333344444444444433333 333344444445566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039269 264 EVKQELSRLMKEKLEVEGV 282 (439)
Q Consensus 264 elkqEl~~~~~eK~elE~~ 282 (439)
+-+.+.+++-....+++++
T Consensus 492 e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 492 EKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 194
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=57.40 E-value=1.8e+02 Score=27.86 Aligned_cols=130 Identities=24% Similarity=0.267 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cccchhHHHH-------
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK---SKTDVKLLVK------- 253 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak---skad~KvLvK------- 253 (439)
|++-..-.+-.|..+++..+...--..+-..|...|+..|-..+++...+.+...+.++. .+..++-|-+
T Consensus 38 Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL 117 (194)
T PF15619_consen 38 LKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNL 117 (194)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 333334445556666666666655566666677777777777666666665555444332 2233333222
Q ss_pred -HHHHHhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 254 -EVKSLRSSQSEVKQELSRLMKEKLEV-----------EGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 254 -EVKsLR~sq~elkqEl~~~~~eK~el-----------E~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
|.-.|-.....+...+...-+.-..| .+-|..|+.+.-.+...-..+..||.-|..+|+|
T Consensus 118 ~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 118 AEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222223333333322222222 3456677777777888888888999999999887
No 195
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=57.21 E-value=47 Score=28.59 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMK 274 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~ 274 (439)
|+..|.+.+.+.+.+.+..+|....+.---+- |--+++-|.+|..+|.+......++|....+
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eL-s~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRREL-SPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCC-ChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 56788888888888888888887766544332 2335777889999999988888888877655
No 196
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.82 E-value=3.6 Score=45.22 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHH
Q 039269 141 LTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLL 220 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~ 220 (439)
+..+.-+|-..++..++...+ +..+..+-|.++..++=.+.+||.+..++ ...+.+...|+
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~-~e~~~~d~~~~~e~le~ei~~L~q~~~eL------------------~~~A~~a~~Lr 297 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELER-LEEQRDDLKIELEELEKEIDELRQENEEL------------------QAEAREARALR 297 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHh
Confidence 333334444444444443332 23334444444444444455555544432 22355667777
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh--ccccchhHHHHHHHHHhhhh
Q 039269 221 QELEVVREQLENLHKQHEESEV--KSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 221 qEL~~~r~~le~L~k~~~ElEa--kskad~KvLvKEVKsLR~sq 262 (439)
-|||.+|..-+-+.+--.++|. |---|+..|-+.||.|+...
T Consensus 298 DElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N 341 (713)
T PF05622_consen 298 DELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDN 341 (713)
T ss_dssp --------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776655554443333332 11124556666666666644
No 197
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=56.72 E-value=4.1e+02 Score=31.69 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=18.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
.....++...|+.-.+++.+|++.-++-.++
T Consensus 433 ~t~l~~~h~~lL~K~~di~kQle~~~~s~~~ 463 (980)
T KOG0980|consen 433 YTELRQEHADLLRKYDDIQKQLESAEQSIDD 463 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555566666677777777766655553
No 198
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=56.66 E-value=1.3e+02 Score=32.42 Aligned_cols=95 Identities=21% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHH-hhhHhhhhhhhhhHHHH
Q 039269 138 RQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQ-DERARAESSKMSIIQEN 216 (439)
Q Consensus 138 k~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~q-dek~~~e~~~~s~~~e~ 216 (439)
-+=|.+||.||+.-.|.+|. ++.+.-|-.---.+..++=|+..+..-+.+|+..++.++ .=+..-|..++-+..|-
T Consensus 215 sd~Ll~kVdDLQD~VE~LRk---DV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQ 291 (424)
T PF03915_consen 215 SDRLLTKVDDLQDLVEDLRK---DVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQ 291 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 35588999999999998873 455555555444566677788889999999999998874 34556677788888887
Q ss_pred HHHHHHHHH---HHHHHHHHHh
Q 039269 217 EMLLQELEV---VREQLENLHK 235 (439)
Q Consensus 217 ~~l~qEL~~---~r~~le~L~k 235 (439)
+.|..+-+- +++.++.+..
T Consensus 292 qfL~~QedL~~DL~eDl~k~~e 313 (424)
T PF03915_consen 292 QFLKLQEDLLSDLKEDLKKASE 313 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 777665433 3444444443
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.23 E-value=2.6e+02 Score=29.29 Aligned_cols=156 Identities=21% Similarity=0.301 Sum_probs=100.7
Q ss_pred eechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhh
Q 039269 97 ALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQ 176 (439)
Q Consensus 97 vlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tq 176 (439)
|=|.+=+.-|.||+--| =+++++|-.|--++|-|--..+.=+.+...+....|+..-+---..|+.----|+-.=.|
T Consensus 191 vd~~eWklEvERV~PqL---Kv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q 267 (359)
T PF10498_consen 191 VDPAEWKLEVERVLPQL---KVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQ 267 (359)
T ss_pred CCHHHHHHHHHHHhhhh---eeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999999888 467889999999999999888888888888888888887777777777655555444445
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHH
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVK 256 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVK 256 (439)
+ +.+.+++...=.+|. .+...-..+.+-...+..+|..+-++||...++.+|-.+ +=+|-.=||+
T Consensus 268 l----e~l~~eYr~~~~~ls-------~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~-~mtD~sPlv~--- 332 (359)
T PF10498_consen 268 L----EPLIQEYRSAQDELS-------EVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS-SMTDGSPLVK--- 332 (359)
T ss_pred h----HHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHH---
Confidence 3 333333332222222 222333334555556666777777777776666665433 3455555554
Q ss_pred HHhhhhHHHHHHHHH
Q 039269 257 SLRSSQSEVKQELSR 271 (439)
Q Consensus 257 sLR~sq~elkqEl~~ 271 (439)
+|.....||+|+.+
T Consensus 333 -IKqAl~kLk~EI~q 346 (359)
T PF10498_consen 333 -IKQALTKLKQEIKQ 346 (359)
T ss_pred -HHHHHHHHHHHHHH
Confidence 44555556666554
No 200
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.14 E-value=65 Score=35.41 Aligned_cols=76 Identities=12% Similarity=0.234 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhhhhhhhccHHHH--HHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 160 KENMQQAVLNEKERFTQMQWDMEEL--RKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 160 ke~lqQAvl~EREr~tqmQWdmeEl--r~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
-+.+++++=.-++++++ .+++| ..++.+|+..++..+..+-..-.....+..+.+.|..|+.+.+++++++.++.
T Consensus 166 ~~~~~~~~k~~~~~w~~---~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 166 AEEIEKSLKAMQQKWKK---RKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHHHHHHHHHH---HHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555655555566555 34556 77888888888888665333334445556677777777777777776666554
Q ss_pred h
Q 039269 238 E 238 (439)
Q Consensus 238 ~ 238 (439)
.
T Consensus 243 ~ 243 (555)
T TIGR03545 243 Q 243 (555)
T ss_pred H
Confidence 3
No 201
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=55.99 E-value=1.7e+02 Score=26.93 Aligned_cols=92 Identities=22% Similarity=0.359 Sum_probs=57.9
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHH---H-----HHHhhhhhhhhccccch
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQL---E-----NLHKQHEESEVKSKTDV 248 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~l---e-----~L~k~~~ElEakskad~ 248 (439)
+|-+|+++-.|++.+.-.+-.+--.+ -.+++-.+||...+.||+-+-..- . -..++++|.-+-.+.-+
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~r----qkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRl 78 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESR----QKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRL 78 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHH
Confidence 35567777777776655443321111 123444677788888887662211 1 12466777777777778
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
.++-+|+|++-++...+.++....
T Consensus 79 efI~~Eikr~e~~i~d~q~e~~k~ 102 (120)
T KOG3478|consen 79 EFISKEIKRLENQIRDSQEEFEKQ 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888777776543
No 202
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.88 E-value=1.4e+02 Score=26.93 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=24.8
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 202 RARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 202 k~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~ 281 (439)
+...+.+..+....+-.|..+|+..+---+.| +++=+-||+.+..|+++....-+-+.++++
T Consensus 4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL------------------~kqkd~L~~~l~~L~~q~~s~~qr~~eLqa 65 (107)
T PF09304_consen 4 KEALEASQNELQNRLASLERSLEDEKTSQGEL------------------AKQKDQLRNALQSLQAQNASRNQRIAELQA 65 (107)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHH------------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544444333333 444444555555555444444444444444
Q ss_pred HH
Q 039269 282 VL 283 (439)
Q Consensus 282 ~L 283 (439)
=|
T Consensus 66 ki 67 (107)
T PF09304_consen 66 KI 67 (107)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 203
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=55.59 E-value=2.9e+02 Score=31.62 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhHHHH
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLNQEVA 136 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLnQE~A 136 (439)
.|+..-+.-+..-+.++++||+.|+++..
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~L~~~~~ 525 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEKLSALEK 525 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 36666677777778888888888877543
No 204
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=55.18 E-value=2.3e+02 Score=28.41 Aligned_cols=82 Identities=24% Similarity=0.208 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHH
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSK--MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKS 257 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~--~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKs 257 (439)
.+++++.++.+.|.+|+..++......+.. .........|..++..++-++..+...+.+ .-.+++.|-.++..
T Consensus 178 ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~----~~P~v~~l~~~i~~ 253 (362)
T TIGR01010 178 EVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPE----QNPQVPSLQARIKS 253 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----CCCchHHHHHHHHH
Confidence 344466666677777766666655544332 234555666666666666666666543322 12334444445555
Q ss_pred HhhhhHHH
Q 039269 258 LRSSQSEV 265 (439)
Q Consensus 258 LR~sq~el 265 (439)
|+.+..+.
T Consensus 254 l~~~i~~e 261 (362)
T TIGR01010 254 LRKQIDEQ 261 (362)
T ss_pred HHHHHHHH
Confidence 55444333
No 205
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=55.02 E-value=1.5e+02 Score=26.26 Aligned_cols=148 Identities=23% Similarity=0.284 Sum_probs=73.5
Q ss_pred HHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhh
Q 039269 128 LARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAES 207 (439)
Q Consensus 128 iaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~ 207 (439)
|.-||++...++|+.....-.-. -....++.+.|= .=|+|=-.|.+-.+.=..|..
T Consensus 4 ~~yiN~~L~s~G~~~~~~~~~~~------~~~~~~~~~vin--------~i~~Ll~~~~r~~~~~e~l~~---------- 59 (151)
T PF11559_consen 4 IEYINQQLLSRGYPSDGLLFDSA------EESEDNDVRVIN--------CIYDLLQQRDRDMEQREDLSD---------- 59 (151)
T ss_pred HHHHHHHHHHCCCCCCCccCccc------ccccccHHHHHH--------HHHHHHHHHHHHHHHHHHHHH----------
Confidence 56688888888888776543322 112222222221 223332233333332222221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
+......+++.+...+..++.+++.+.++...++.+ ..-|-++++++...+...+.|+...-..-....
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~----~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~------- 128 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEK----ERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRK------- 128 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 122335556666666666666666666666544433 344555566665555555444444333333333
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 288 QRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 288 q~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
..-..-.+|-=.|+.-|++||.+
T Consensus 129 ---tq~~~e~rkke~E~~kLk~rL~q 151 (151)
T PF11559_consen 129 ---TQYEHELRKKEREIEKLKERLNQ 151 (151)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333344445577777777753
No 206
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=54.76 E-value=74 Score=35.01 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=10.3
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHH
Q 039269 244 SKTDVKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 244 skad~KvLvKEVKsLR~sq~elkqE 268 (439)
.+.+.+.|.+|.|..+..-..++++
T Consensus 217 ~~~e~d~lk~e~~~~~~~i~~~~~~ 241 (555)
T TIGR03545 217 IKEEFDKLKKEGKADKQKIKSAKND 241 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333
No 207
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=54.44 E-value=1.8e+02 Score=26.84 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=29.9
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
++..+..|.+.+........+...-....+.+..|+..+...++.+.++++.+-..
T Consensus 137 ~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~ 192 (236)
T PF09325_consen 137 YQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISEN 192 (236)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433322334455666667777777777666666666543
No 208
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=54.10 E-value=1.9e+02 Score=27.04 Aligned_cols=37 Identities=32% Similarity=0.366 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHH
Q 039269 227 REQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEV 265 (439)
Q Consensus 227 r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~el 265 (439)
.+|||.|-.+|..+=.=-+ -.-|++||.+|-+|..+|
T Consensus 95 e~qLE~lm~qHKdLwefh~--~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 95 EEQLEDLMGQHKDLWEFHM--PERLAREICALESSKEQL 131 (134)
T ss_pred HHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhHHHH
Confidence 4477777655554322222 346899999999887444
No 209
>PRK11519 tyrosine kinase; Provisional
Probab=54.04 E-value=3.6e+02 Score=30.18 Aligned_cols=59 Identities=14% Similarity=0.309 Sum_probs=35.6
Q ss_pred ceeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhH-HHHHHHHHHhhhhhhHHHHHHhhHh
Q 039269 94 SLLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQ-EVAVRQFLTTKVKDLEVELETTSEN 158 (439)
Q Consensus 94 ~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQ-E~AVk~fL~tKVkDLEveLettkqk 158 (439)
..|-+-..-..+-.+|++++-+.+.. +.+.+=++ .....+||...+..++.+|+...++
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~~Yi~------~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~ 289 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITRNYLE------QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENK 289 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666777788777554443 33333222 3356678888888887777765444
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=53.52 E-value=3.5e+02 Score=29.94 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
..+|.+|.+.+++-+..++.+.+++.+ .+++.-.+.++|+..|.-.|
T Consensus 402 ~E~n~~l~knq~vw~~kl~~~~e~~~~--------------~~~s~d~~I~dLqEQlrDlm 448 (493)
T KOG0804|consen 402 REENKKLIKNQDVWRGKLKELEEREKE--------------ALGSKDEKITDLQEQLRDLM 448 (493)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhHh
Confidence 467778888888888777776655432 34444445555555555544
No 211
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=53.50 E-value=3.3e+02 Score=29.69 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHH
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEEL 184 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeEl 184 (439)
|.+..+..++..|..+.+++..+...|+.=+..-.==...|..|...... +...+++-|-.|+. -++.|
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~--------lrk~ll~~~~~~G~---a~~~L 166 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRE--------LRKELLAHSFSYGP---AIEEL 166 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhch---hHHHH
Confidence 56677788888888888888888777776555444444444444444333 33456676777776 55667
Q ss_pred HHHHHHHHHhhhhHHh-----hhHhhhhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhccccch
Q 039269 185 RKQLLETELKLKYEQD-----ERARAESSKMSIIQENEMLLQELEVV-----------REQLENLHKQHEESEVKSKTDV 248 (439)
Q Consensus 185 r~k~~e~E~~Lks~qd-----ek~~~e~~~~s~~~e~~~l~qEL~~~-----------r~~le~L~k~~~ElEakskad~ 248 (439)
-.++.++|........ +-.-+..-...+..+...|.+.++.+ -.|++.|+.-|.++..+-= ..
T Consensus 167 e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy-~l 245 (560)
T PF06160_consen 167 EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGY-YL 245 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC-CC
Confidence 7777777777665532 22233344445555555555555554 4566666666666655421 11
Q ss_pred h--HHHHHHHHHhhhhHHHHHHH
Q 039269 249 K--LLVKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 249 K--vLvKEVKsLR~sq~elkqEl 269 (439)
. -+-++++.++.+..+..+-|
T Consensus 246 ~~~~i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 246 EHLDIEEEIEQIEEQLEEALALL 268 (560)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 24556666666655555444
No 212
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.36 E-value=2.8e+02 Score=31.67 Aligned_cols=104 Identities=24% Similarity=0.209 Sum_probs=67.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
...+......|++++.+.+..+.+|-....+.---.. .+-|..++|.-...-++..+.++.++|.+
T Consensus 56 ve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~----~~~k~e~tLke~l~~l~~~le~lr~qk~e---------- 121 (660)
T KOG4302|consen 56 VEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE----ISDKIEGTLKEQLESLKPYLEGLRKQKDE---------- 121 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc----cccccCccHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445667788999999999999999888877654444 12233346665555555555665555432
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcc
Q 039269 289 RMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSD 335 (439)
Q Consensus 289 ~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sD 335 (439)
+.+--..++|++.-|++.|-+- +...+.+++|.+-+++
T Consensus 122 ----R~~ef~el~~qie~l~~~l~g~-----~~~~~~~~~D~~dlsl 159 (660)
T KOG4302|consen 122 ----RRAEFKELYHQIEKLCEELGGP-----EDLPSFLIADESDLSL 159 (660)
T ss_pred ----HHHHHHHHHHHHHHHHHHhcCC-----ccCCcccccCcccccH
Confidence 3344456788888888888665 3344556677776663
No 213
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=53.08 E-value=2.9e+02 Score=28.78 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~ 281 (439)
.-|+.||+.|+.+...|++.|.++-.....|.+
T Consensus 320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 320 YGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999998887766666554
No 214
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=52.88 E-value=2.7e+02 Score=28.35 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc-chhHHHHHHHHHh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT-DVKLLVKEVKSLR 259 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska-d~KvLvKEVKsLR 259 (439)
++..+..++++|.+..+. .....++.+.|-..+..++++|.-|+--. +-|==.|+ .|--|++.|..|+
T Consensus 65 l~~ak~eLqe~eek~e~~----------l~~Lq~ql~~l~akI~k~~~el~~L~TYk-D~EYPvK~vqIa~L~rqlq~lk 133 (258)
T PF15397_consen 65 LQQAKAELQEWEEKEESK----------LSKLQQQLEQLDAKIQKTQEELNFLSTYK-DHEYPVKAVQIANLVRQLQQLK 133 (258)
T ss_pred HHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHH
Confidence 566677777777766554 45556777777777777788888776432 34555666 7888999999999
Q ss_pred hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HhhhhcccccccccccceecCCCC
Q 039269 260 SSQSEVKQELSRLMK-EKLEVEGVLQKEKQRMEHADIANLKLLHECEILRN-----RLQECSVNFLSEEEDKLTVDTSSP 333 (439)
Q Consensus 260 ~sq~elkqEl~~~~~-eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~-----RLQECn~~~l~ee~d~l~vd~Ss~ 333 (439)
.+|..=-.+|+...+ +...+++-.+..++..-.+.+...---|.=+++.. .++-|-+-|-
T Consensus 134 ~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~r-------------- 199 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFR-------------- 199 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 888765555555443 34445555555554433322222211122222222 2344444443
Q ss_pred cchhhhhhccchhHHHHHHHHhhhhhhh
Q 039269 334 SDAVDLLTTSDNRIGLLVAETQLLAQDI 361 (439)
Q Consensus 334 sDAldLLaTSDnRI~lLlAEaQlL~~d~ 361 (439)
+.....-+.|..|-||++-|..+.
T Consensus 200 ----e~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 200 ----EEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111222389999999999996554
No 215
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=52.74 E-value=2.2e+02 Score=28.24 Aligned_cols=123 Identities=18% Similarity=0.203 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 039269 214 QENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMK--EKLEVEGVLQKEKQRME 291 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~--eK~elE~~L~~Ekq~~e 291 (439)
.=-..++.|++.+=.+.+.+.+. +..+.-..+..|.++.+.+|.++.++-+.|..-+. ...+++++=..=.+-..
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~---l~~~i~~~l~~l~~~~~~~~k~~~~~~~kl~~e~~~~~~~~l~K~K~~Y~~~~~ 141 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEE---LNSGPLHRLTMMIKDKQQVKKSYIGVHQQIEAEMYKVTKTELEKLKCSYRQLTK 141 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556677777776666666554 55666677788889999999999888777776553 34566666555555566
Q ss_pred HHHHHHHHHHh------HHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhh
Q 039269 292 HADIANLKLLH------ECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDI 361 (439)
Q Consensus 292 ~~~~ar~Kllh------Ec~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~ 361 (439)
-+..||.|.-. +-.-.+.|+++|+..+-. ..|.--+-|+.|+..-...
T Consensus 142 ~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~----------------------~kN~Yll~i~~aN~~k~~Y 195 (234)
T cd07686 142 EVNSAKEKYKDAVAKGKETEKARERYDKATMKLHM----------------------LHNQYVLAVKGAQLHQHQY 195 (234)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHh----------------------hhhHHHHHHHHHHHHHHHH
Confidence 66677776632 235688888888877652 2355556666776654443
No 216
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=52.61 E-value=3e+02 Score=28.83 Aligned_cols=130 Identities=22% Similarity=0.248 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHH------HH
Q 039269 182 EELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVK------EV 255 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvK------EV 255 (439)
+=|-.++...|.+.++.+++=-+.--+...-..=.+.+.-+|.+++-+...+..-|---++|-. |..+| -+
T Consensus 147 e~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~---k~~~Kqes~eERL 223 (305)
T PF14915_consen 147 EILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVN---KYIGKQESLEERL 223 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHH
Confidence 5577899999999999988766665555544444556666777776666655544433333321 11221 13
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH-HHHHHHHHHhHHHHHHHHhhhh
Q 039269 256 KSLRSSQSEVKQELSRLMKEKLEVEG--------------VLQKEKQRMEH-ADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 256 KsLR~sq~elkqEl~~~~~eK~elE~--------------~L~~Ekq~~e~-~~~ar~KllhEc~iLr~RLQEC 314 (439)
=-|-+..+=|.|.|+.+.+.-.--|+ -|+.|.++.-. ...-+++|+.||.-|+.|+--|
T Consensus 224 ~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~qy 297 (305)
T PF14915_consen 224 SQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQY 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555666677777777654333332 23344444333 3445778999999999998544
No 217
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=52.47 E-value=2.2e+02 Score=27.33 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhh---------hhHHHHHHhhHhhHHHHHHHHHH
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVK---------DLEVELETTSENCKENMQQAVLN 169 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVk---------DLEveLettkqk~ke~lqQAvl~ 169 (439)
..+.+.|..+..-...+.+.....-.+|..|..--+=+..|.. .+=..+-..-++.+..|+||.-.
T Consensus 25 ~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~~s 99 (296)
T PF13949_consen 25 EKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQASES 99 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666666666666666666666544433333331 12223334444555555555433
No 218
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=52.44 E-value=2.3e+02 Score=27.44 Aligned_cols=137 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHH-------HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHH---HHHh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEV-------AVRQFLTTKVKDLEVELETTSENCKENMQQA---VLNE 170 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~-------AVk~fL~tKVkDLEveLettkqk~ke~lqQA---vl~E 170 (439)
++|.+|---...--..|-+.=.+++..++.|+++. .+|.=...++++|+.++..+.....+.++++ .+-|
T Consensus 36 ~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~qfl~E 115 (206)
T PF14988_consen 36 RERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAESQFLQE 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhccHHHH-HHHHHHHHHhhhhHHh---------hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 171 KERFTQMQWDMEEL-RKQLLETELKLKYEQD---------ERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 171 REr~tqmQWdmeEl-r~k~~e~E~~Lks~qd---------ek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
+.++-. ++ ..+...|...--.+-+ -+......-.++-.||..|.++|-..-++...|......|
T Consensus 116 K~~LEk------e~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~L 189 (206)
T PF14988_consen 116 KARLEK------EASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQL 189 (206)
T ss_pred HHHHHH------HHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhc
Q 039269 241 EVK 243 (439)
Q Consensus 241 Eak 243 (439)
+-+
T Consensus 190 e~q 192 (206)
T PF14988_consen 190 EKQ 192 (206)
T ss_pred HHH
No 219
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=52.02 E-value=3.4e+02 Score=30.82 Aligned_cols=14 Identities=29% Similarity=0.173 Sum_probs=8.7
Q ss_pred HHHHHhhhhccccc
Q 039269 306 ILRNRLQECSVNFL 319 (439)
Q Consensus 306 iLr~RLQECn~~~l 319 (439)
-|+..+-+|....-
T Consensus 539 ~l~~~~~~~~~~~~ 552 (607)
T KOG0240|consen 539 ELRKDLGEIGWKIG 552 (607)
T ss_pred HHHhhhcccccccc
Confidence 45666777766554
No 220
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=51.80 E-value=2.6e+02 Score=28.03 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=22.1
Q ss_pred HHHHHHhhHHHH--HHHHHHhhhhhhHHHHHHhhHhhHH
Q 039269 125 EDLLARLNQEVA--VRQFLTTKVKDLEVELETTSENCKE 161 (439)
Q Consensus 125 EDLiaRLnQE~A--Vk~fL~tKVkDLEveLettkqk~ke 161 (439)
+..+.++|...+ -.+||...|..++.+|+...++-.+
T Consensus 157 ~~~i~~~~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~ 195 (362)
T TIGR01010 157 ERLINRLNERARKDTIAFAENEVKEAEQRLNATKAELLK 195 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 4567777777777777766655443
No 221
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=51.62 E-value=66 Score=31.85 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=43.6
Q ss_pred HHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 233 LHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIAN 297 (439)
Q Consensus 233 L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar 297 (439)
+++.+.+|+++ -|-|-+|.-.||-+|+.|..|..+.+.++.+......+--+-.|.++.+.
T Consensus 36 ~~~d~~~L~~~----Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~~r~~f 96 (228)
T PRK06800 36 IQKDHEELLAQ----QKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQF 96 (228)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666654 45688888899999999999999999988888777665444444444443
No 222
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.59 E-value=2.2e+02 Score=27.87 Aligned_cols=86 Identities=22% Similarity=0.354 Sum_probs=50.7
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHH
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARA----ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLV 252 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~----e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLv 252 (439)
-.|+.--|++++.++|.+|...+...... .+...-+..|.+.| |+=.++|+-.+.. =-.+.-.+.+.+-
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL---L~YK~~ql~~~~~----~~~~~~~~l~~v~ 166 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL---LDYKERQLRELEE----GRSKSGKNLKSVR 166 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH---HHHHHHHHHhhhc----cCCCCCCCHHHHH
Confidence 35888889999999999998876655442 11111222222222 2233444443332 2345667778888
Q ss_pred HHHHHHhhhhHHHHHHH
Q 039269 253 KEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 253 KEVKsLR~sq~elkqEl 269 (439)
..|+.++.+-.-|+.=|
T Consensus 167 ~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHL 183 (195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887776655433
No 223
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=51.48 E-value=43 Score=31.21 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYE 198 (439)
Q Consensus 184 lr~k~~e~E~~Lks~ 198 (439)
|+.++...+..|+..
T Consensus 128 L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 128 LEEKIKDLEEELKEK 142 (194)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 224
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.32 E-value=85 Score=27.65 Aligned_cols=53 Identities=30% Similarity=0.317 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
+|-.+..+||..+.....+=.........+..||..|+.|-+.+|+.+..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455677888888877777777888888899999999999999999888776
No 225
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.94 E-value=4.5e+02 Score=31.66 Aligned_cols=124 Identities=26% Similarity=0.294 Sum_probs=55.9
Q ss_pred hhhchHHHHHHhhHHHH---------HHHHHHhh--hhhhHHHHHHhhHhhHHHHH-HHHHHhhhhhhhhhccHHHHHHH
Q 039269 120 AKADTEDLLARLNQEVA---------VRQFLTTK--VKDLEVELETTSENCKENMQ-QAVLNEKERFTQMQWDMEELRKQ 187 (439)
Q Consensus 120 aKTDmEDLiaRLnQE~A---------Vk~fL~tK--VkDLEveLettkqk~ke~lq-QAvl~EREr~tqmQWdmeElr~k 187 (439)
|+.+||.=+.=|-=+.- |-++|+.| +||+=.|+|-.|+--+-.-. .-|.+=-|+++|+--...+.--+
T Consensus 370 a~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ 449 (1041)
T KOG0243|consen 370 AKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQ 449 (1041)
T ss_pred CcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHH
Confidence 56678877766622221 22566655 58888888777654322111 12333345555532222222233
Q ss_pred HHHHHHhhhhHHh-------hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 188 LLETELKLKYEQD-------ERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 188 ~~e~E~~Lks~qd-------ek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
+.+||.+|..++. --.+....+.-...+.+.+...|...-+.++++++++.++.++
T Consensus 450 ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 450 IEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433333322 2222333333333344444444444444444444444444443
No 226
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=50.84 E-value=17 Score=29.01 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=25.7
Q ss_pred ccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 245 KTDVKLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 245 kad~KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
-.|+.-|..|+.+|+.++.+|+.-|.||+
T Consensus 32 L~~R~~l~~e~~~L~~qN~eLr~lLkqYl 60 (60)
T PF14775_consen 32 LLDRAALIQEKESLEQQNEELRSLLKQYL 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45788899999999999999999998875
No 227
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.83 E-value=3.8e+02 Score=29.60 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 252 VKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 252 vKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
--||-+|+++-.+|.+-+.++-+. ++.+.+-.++. -++|.-|+--|+.+|++
T Consensus 401 q~e~~~lp~ave~l~ql~~~~r~~-------~~~~l~a~ehv---~e~l~~ei~~L~eqle~ 452 (542)
T KOG0993|consen 401 QAEVQNLPAAVEQLAQLYKQRRTS-------LQQELDASEHV---QEDLVKEIQSLQEQLEK 452 (542)
T ss_pred HhhhhcchhhHHHHHHHHHHHHHH-------HHHHHhHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457888888877777666555443 23334333333 34566666666666664
No 228
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=50.79 E-value=2.5e+02 Score=32.07 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=7.5
Q ss_pred HHHHHHHhhHHH
Q 039269 388 MLTDIFIDNARL 399 (439)
Q Consensus 388 mLaDlfiDNA~L 399 (439)
..-|-|||.|.+
T Consensus 719 ~~l~~fl~~a~~ 730 (782)
T PRK00409 719 ERLDKYLDDALL 730 (782)
T ss_pred HHHHHHHHHHHH
Confidence 445667777754
No 229
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=50.44 E-value=2.2e+02 Score=26.61 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 161 ENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 161 e~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
+.-++|+...+-++++ .+.....-+-.+.-+.......+...-+...-.-+.+++|+..+.++-.|...-..+
T Consensus 14 drAe~a~~~q~~~l~~-------a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~~~~qv~~Lr~~e~~l 86 (152)
T PF07321_consen 14 DRAERALRRQERRLQE-------ARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEKWQQQVASLREREAEL 86 (152)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 4456778887888887 888888888888888888888888888888888999999999999999998888888
Q ss_pred hhccccchhHHHHHHHHHhhhhHHH
Q 039269 241 EVKSKTDVKLLVKEVKSLRSSQSEV 265 (439)
Q Consensus 241 Eakskad~KvLvKEVKsLR~sq~el 265 (439)
+.....-.+.+-.|-+.|+..+..+
T Consensus 87 e~~~~~a~~~~~~e~~~l~~a~~~~ 111 (152)
T PF07321_consen 87 EQQLAEAEEQLEQERQALEEARKQL 111 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776666666777766666665443
No 230
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.25 E-value=2.6e+02 Score=27.50 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=8.7
Q ss_pred HHhhHHHHHHHHHHH
Q 039269 393 FIDNARLRMQVNTVI 407 (439)
Q Consensus 393 fiDNA~LRkqvNSv~ 407 (439)
.--|-+|..|++.|.
T Consensus 181 ~EKnk~lq~QL~~L~ 195 (246)
T PF00769_consen 181 AEKNKRLQEQLKELK 195 (246)
T ss_dssp HHH-HHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHH
Confidence 345777777776543
No 231
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=50.00 E-value=3.9e+02 Score=29.45 Aligned_cols=38 Identities=13% Similarity=0.427 Sum_probs=23.2
Q ss_pred ccCCCceeeechh---hh--------hhH--HHHHHHHHHH----HHHhhhchHHH
Q 039269 89 LFPRNSLLALPSD---QR--------LKL--NRVLNNMQQR----LTAAKADTEDL 127 (439)
Q Consensus 89 q~~~d~~ivlP~d---qR--------~Kl--nRvl~Tmq~R----l~taKTDmEDL 127 (439)
+.||..|||+|+- .+ ..+ ++|+..|... +.. +.||.|+
T Consensus 149 eWpG~tqI~IPL~~~~~~~~~s~vdt~~i~~~~vv~~l~~~~dk~~~~-rk~m~D~ 203 (489)
T PF05262_consen 149 EWPGKTQIVIPLSDNILSGSLSDVDTDEISDEKVVQELREDKDKGIDK-RKDMVDI 203 (489)
T ss_pred cCCCCceEEEeccccccCCCccccchhhcccHHHHHHHhhccccChhh-hhhhHHH
Confidence 4788899999987 33 222 2555555432 223 4588888
No 232
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=49.86 E-value=2.4e+02 Score=26.90 Aligned_cols=92 Identities=24% Similarity=0.291 Sum_probs=59.7
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc------------c
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT------------D 247 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska------------d 247 (439)
||++.-.++.|=.-.-.+...-++..-..++-+...|+.|..+|..+..+++.+..+...=|+.-+. .
T Consensus 61 dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh 140 (182)
T PF15035_consen 61 DLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEH 140 (182)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 5666555555555555555455556666667777788888888888888887776655544433322 2
Q ss_pred hhH--HHHHHHHHhhhhHHHHHHHHH
Q 039269 248 VKL--LVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 248 ~Kv--LvKEVKsLR~sq~elkqEl~~ 271 (439)
.++ |=++|-.||++-.+||..-..
T Consensus 141 ~rll~LWr~v~~lRr~f~elr~~Ter 166 (182)
T PF15035_consen 141 SRLLSLWREVVALRRQFAELRTATER 166 (182)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234 449999999999888765443
No 233
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=49.83 E-value=1.3e+02 Score=31.49 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=11.9
Q ss_pred ccccCCCCccccccccc---cccccccc
Q 039269 11 SKTLPGGEAELLHEPEY---LRLDGHVR 35 (439)
Q Consensus 11 ~~~~~~~~~~~~se~~~---~~~~~H~r 35 (439)
..|.+|+++.+.++++. +...|+..
T Consensus 143 ~~~~~g~~~~~~~~d~~~~~A~~~G~~~ 170 (451)
T PF03961_consen 143 IPLKAGKNTEVSEEDGNKLYAAIDGRPV 170 (451)
T ss_pred cceeCCCCEEEEcCCCCEEEEecCCEEE
Confidence 34555666665534322 44444443
No 234
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=49.58 E-value=2.4e+02 Score=32.29 Aligned_cols=15 Identities=20% Similarity=0.417 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhH
Q 039269 383 DELRQMLTDIFIDNA 397 (439)
Q Consensus 383 dElRKmLaDlfiDNA 397 (439)
.+|.++|.+.+..+.
T Consensus 719 ~~l~~fl~~a~~~g~ 733 (782)
T PRK00409 719 ERLDKYLDDALLAGY 733 (782)
T ss_pred HHHHHHHHHHHHcCC
Confidence 346777777775543
No 235
>COG5283 Phage-related tail protein [Function unknown]
Probab=49.56 E-value=3.4e+02 Score=33.16 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------cccc
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV----------KSKT 246 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa----------kska 246 (439)
.+=.|-|+-+.++..+...+.+-..-+++|....|+..+....-..|..-++.++.++.++.-+.. +++-
T Consensus 76 ~kqe~~evn~at~a~~kay~e~~~q~tqae~~~~sas~q~~~a~~q~~~~~~~iq~~~~~is~t~k~maaQ~~l~eqt~n 155 (1213)
T COG5283 76 LKQEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGN 155 (1213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 444788899999999999999999999999999999999987766666555555555544444433 4555
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 247 DVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 247 d~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
++--.-++|..||.|-.-.-..++..++.-.-++..|- +....++.++..--..+-.||++.-..
T Consensus 156 ~~g~a~~~~~gl~esf~~q~~aln~q~~~t~k~~~~~~------~~l~e~qq~~~q~~~a~~~~L~~s~~q 220 (1213)
T COG5283 156 KFGTADAKVVGLRESFGRQTEALNKQLERTKKVADALT------YVLDEAQQKLSQALSARLERLQESRTQ 220 (1213)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHHHhhhhhhhhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666778999997665555556655554433333322 223333333433333333555554333
No 236
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=49.40 E-value=4.2e+02 Score=29.68 Aligned_cols=209 Identities=20% Similarity=0.221 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHh---------hHhhHHHHHHHHHHhhhh
Q 039269 103 RLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETT---------SENCKENMQQAVLNEKER 173 (439)
Q Consensus 103 R~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLett---------kqk~ke~lqQAvl~EREr 173 (439)
...|...|..+...+....++|+++-+.+-|-..=..=.......||.++.-- -..+-+.||..|-+-.+|
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~r 409 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQR 409 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888887766665544444445555566655422 123345567777777788
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHh----hhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchh
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQD----ERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVK 249 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qd----ek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~K 249 (439)
+-.++=-+|..|..+.+--..|+...+ +....-.....+.++.+.+..|+....+.+..|.++|+.+--. ..+.
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~--~~Rs 487 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD--VNRS 487 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCHH
Confidence 887765556677665544444443322 2222223334445555555555555555556666655554322 2222
Q ss_pred H----HHHHHHHHhhhhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 039269 250 L----LVKEVKSLRSSQSEVKQELS--------------RLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 250 v----LvKEVKsLR~sq~elkqEl~--------------~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RL 311 (439)
. ..-=||++|.+..++.+-|+ ++...-+-++.+|-++-.+-+.++.|=+ +|..+.-.++.|
T Consensus 488 ~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK-~La~lh~~c~~L 566 (594)
T PF05667_consen 488 AYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYK-LLASLHENCSQL 566 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHHHHHH
Confidence 2 22235666666655554443 3334445566777777777776666643 444444445555
Q ss_pred hhh
Q 039269 312 QEC 314 (439)
Q Consensus 312 QEC 314 (439)
-+|
T Consensus 567 i~~ 569 (594)
T PF05667_consen 567 IET 569 (594)
T ss_pred HHH
Confidence 444
No 237
>PF14282 FlxA: FlxA-like protein
Probab=48.60 E-value=1.2e+02 Score=26.33 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 039269 221 QELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 221 qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~ 277 (439)
..+..+++++..|++++.+|....-.+-+.--.-++-|-.+...|...+.+...++.
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555532223333333444444444444444444444433
No 238
>PLN02939 transferase, transferring glycosyl groups
Probab=47.94 E-value=3.8e+02 Score=32.05 Aligned_cols=87 Identities=28% Similarity=0.328 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039269 227 REQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 227 r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~i 306 (439)
.++||.|.++.---.+....-.--|.+|.-+||...+-||.-+.-.-.+..++.. ....-.++-.||+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ 268 (977)
T PLN02939 200 EEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAE-----------TEERVFKLEKERSL 268 (977)
T ss_pred HHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHH
Confidence 4566666666665566666666678888888888888888776544333333211 11123456667788
Q ss_pred HHHHhhhhcccccccccc
Q 039269 307 LRNRLQECSVNFLSEEED 324 (439)
Q Consensus 307 Lr~RLQECn~~~l~ee~d 324 (439)
|..-|+|--..|.+--+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~ 286 (977)
T PLN02939 269 LDASLRELESKFIVAQED 286 (977)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 888887777777655444
No 239
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=47.74 E-value=1.6e+02 Score=30.82 Aligned_cols=44 Identities=32% Similarity=0.327 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVK 256 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVK 256 (439)
..+|+.|.++...+++|+|.+-...+++|..-=+-.-+|.-|=|
T Consensus 150 ~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK 193 (342)
T PF06632_consen 150 QKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKK 193 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 66888899999999999999998888888876666666655544
No 240
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.70 E-value=3.5e+02 Score=30.11 Aligned_cols=37 Identities=16% Similarity=0.279 Sum_probs=24.3
Q ss_pred hhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 120 AKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 120 aKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
-|+.+|+||--=+--+-=|-.+..++++|-.-|++|+
T Consensus 367 Lk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tq 403 (527)
T PF15066_consen 367 LKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQ 403 (527)
T ss_pred HHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3566777776666656666666667777776676665
No 241
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=47.67 E-value=1.1e+02 Score=26.48 Aligned_cols=65 Identities=22% Similarity=0.233 Sum_probs=43.3
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhH--HhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYE--QDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~--qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
|++|..++=+++...+....+|.+++.. .++=...+-..+...++...+...++.+..+++-|.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444555788888888888888 5555666666666677777777777666666666543
No 242
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.53 E-value=98 Score=31.49 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSL 258 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsL 258 (439)
++..+.+.+..+++..+..++.|++++.+++...+..-++|-+=+|++
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAm 110 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAM 110 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444445555555555555555555555544444
No 243
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=47.29 E-value=4e+02 Score=29.06 Aligned_cols=101 Identities=25% Similarity=0.281 Sum_probs=72.3
Q ss_pred HHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHH-hhhHhhhhhhhhhHHHHH
Q 039269 139 QFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQ-DERARAESSKMSIIQENE 217 (439)
Q Consensus 139 ~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~q-dek~~~e~~~~s~~~e~~ 217 (439)
+-|-|||.||..-.|..| |.+.+.-|=.-.--+-.++=||+.+..-+..|+..++.+. -=+.--|+.++-+-.|-+
T Consensus 220 d~lltkVDDLQD~vE~LR---kDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqq 296 (426)
T smart00806 220 DSLLTKVDDLQDIIEALR---KDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQ 296 (426)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHH
Confidence 457899999999999987 5677777766666677788899999999999999999873 234445677777777766
Q ss_pred HHHHH---HHHHHHHHHHHHhhhhhhhh
Q 039269 218 MLLQE---LEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 218 ~l~qE---L~~~r~~le~L~k~~~ElEa 242 (439)
.|.-+ +.++++.|+...+-+.=+|.
T Consensus 297 fL~lQedL~~DL~dDL~ka~eTf~lVeq 324 (426)
T smart00806 297 FLTLQEDLIADLKEDLEKAEETFDLVEQ 324 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433 23456666666555544443
No 244
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=47.01 E-value=4.9e+02 Score=29.74 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 225 VVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 225 ~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
.+-..++.++.-+.+...+++++++-|.+++|+.+.-..+|+..|..+
T Consensus 296 ~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 296 QLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334566777788888999999999999999999999999999888653
No 245
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=46.77 E-value=2.9e+02 Score=27.03 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039269 227 REQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGV 282 (439)
Q Consensus 227 r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~ 282 (439)
-++|+...+++..+..+..++...|---+|...-...-|...|.|--++..+|-+|
T Consensus 142 eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkI 197 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKI 197 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777777777776666655555555556666666666666554
No 246
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.56 E-value=2.3e+02 Score=29.58 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-----cccchhHHHHHHHHH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK-----SKTDVKLLVKEVKSL 258 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak-----skad~KvLvKEVKsL 258 (439)
||.|+.|.|..|+.. ..|.+.|+-+|...|+..= .++---+||| +|.+||-|-.=|-..
T Consensus 73 LkakLkes~~~l~dR--------------etEI~eLksQL~RMrEDWI--EEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 73 LKAKLKESENRLHDR--------------ETEIDELKSQLARMREDWI--EEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888776 5666777777766665431 2333335554 355555555556666
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 039269 259 RSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 259 R~sq~elkqEl~~~~~eK~ 277 (439)
|++..+--+=+..||.+..
T Consensus 137 rssL~ekDkGiQKYFvDIN 155 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDIN 155 (305)
T ss_pred HhhhchhhhhHHHHHhhhh
Confidence 6777666666666666554
No 247
>PRK04863 mukB cell division protein MukB; Provisional
Probab=46.48 E-value=6.8e+02 Score=31.21 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHh
Q 039269 116 RLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETT 155 (439)
Q Consensus 116 Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLett 155 (439)
.+.....+.++|-.++....+.-.=+..++.+++.+++..
T Consensus 349 ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleel 388 (1486)
T PRK04863 349 KIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA 388 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666665555555555555554444433
No 248
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=46.08 E-value=5e+02 Score=29.58 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=43.5
Q ss_pred HHhhhhhhHHHHHHhhHhhHHHHHHHHHH-h--hhhhhhhhccHHHHHHHHHHHHHh
Q 039269 141 LTTKVKDLEVELETTSENCKENMQQAVLN-E--KERFTQMQWDMEELRKQLLETELK 194 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~ke~lqQAvl~-E--REr~tqmQWdmeElr~k~~e~E~~ 194 (439)
|.+-|-|+|.++..+-..-|++++=|+== | -..|+-++++||+|=+.|+|||++
T Consensus 96 l~e~vsqm~~~vK~~L~~vK~qveiAmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~ 152 (683)
T PF08580_consen 96 LIEEVSQMELDVKKTLISVKKQVEIAMEWEELWNDVLGDLDNEIEECIRLVFEMEEK 152 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888632 1 356788999999999999999864
No 249
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=45.84 E-value=4.1e+02 Score=28.49 Aligned_cols=74 Identities=23% Similarity=0.374 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhh-------
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQM------- 177 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqm------- 177 (439)
++..=|..++.....-..++|+|=..+-+++. .+-||.-.||-|...|
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~-------------------------~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQREYQ-------------------------FILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333555556666666666666555444431 2334444555554432
Q ss_pred ----hccHHHHHHHHHHHHHhhhhHHhhhH
Q 039269 178 ----QWDMEELRKQLLETELKLKYEQDERA 203 (439)
Q Consensus 178 ----QWdmeElr~k~~e~E~~Lks~qdek~ 203 (439)
|=+|..|+..+..||.++..--.++.
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRa 300 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKMAYQSYERA 300 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555677777777777766644444
No 250
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=45.82 E-value=1.4e+02 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=25.3
Q ss_pred hhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 039269 194 KLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLEN 232 (439)
Q Consensus 194 ~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~ 232 (439)
....++......+.+.+.+..+.+.|+.+|..+|....+
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~ 113 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQN 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666677777777777777655544
No 251
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=45.01 E-value=26 Score=33.15 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=0.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEK 276 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK 276 (439)
||--||-...+||+|+ .+++|
T Consensus 32 ~~QRLkDE~RDLKqEl--~V~ek 52 (166)
T PF04880_consen 32 EVQRLKDELRDLKQEL--IVQEK 52 (166)
T ss_dssp CH---------------------
T ss_pred HHHHHHHHHHHHHHHH--HHHHH
Confidence 4445566666777777 55544
No 252
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.91 E-value=1.1e+02 Score=28.52 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccc---hhHHHHHHHHHhhhhHHHHHHHHH
Q 039269 222 ELEVVREQLENLHKQHEESEVKSKTD---VKLLVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEakskad---~KvLvKEVKsLR~sq~elkqEl~~ 271 (439)
+...+|+++-.-+-++..+-+..+.| ++-|+|||-.||.+..+..-+..-
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445444455555555666666 557999999999987766554443
No 253
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=44.89 E-value=3.6e+02 Score=27.53 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=39.6
Q ss_pred HHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhccccchhHHHHHHHHHh
Q 039269 191 TELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH-------KQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 191 ~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~-------k~~~ElEakskad~KvLvKEVKsLR 259 (439)
+...+...+..=....+...+.....+--..||+..++.|..|+ .+|+.+|+.-+.--..-+-=+++|.
T Consensus 174 ~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~ 249 (267)
T PF10234_consen 174 VQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLD 249 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333333333333344444555666667778888888888876 5677776655555555555555543
No 254
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.56 E-value=1.4e+02 Score=27.61 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=5.5
Q ss_pred echhhhhhHHH
Q 039269 98 LPSDQRLKLNR 108 (439)
Q Consensus 98 lP~dqR~KlnR 108 (439)
||.-.|+++=+
T Consensus 26 lp~~~R~~i~~ 36 (192)
T PF05529_consen 26 LPSPIRRKIFK 36 (192)
T ss_pred CCcHHHHHHHH
Confidence 34555655443
No 255
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=44.14 E-value=2.2e+02 Score=25.01 Aligned_cols=78 Identities=24% Similarity=0.358 Sum_probs=45.5
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHH
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVK 256 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVK 256 (439)
|.|+++-|.-.......-+....-+...-+....+|..+.+....++..++.+|+..+..+. .|-+.-.|++.|-
T Consensus 51 ~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~-----~k~eyd~La~~I~ 125 (139)
T PF05615_consen 51 LLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQ-----NKEEYDALAKKIN 125 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 33455555555555555566665566666666666666666666666666666666554332 2335556666665
Q ss_pred HHh
Q 039269 257 SLR 259 (439)
Q Consensus 257 sLR 259 (439)
++.
T Consensus 126 ~~p 128 (139)
T PF05615_consen 126 SQP 128 (139)
T ss_pred cCC
Confidence 555
No 256
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.91 E-value=5.2e+02 Score=29.13 Aligned_cols=128 Identities=11% Similarity=0.125 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
.++||+|.-+|-.-+.-+++--...+..+++-.+-.+.|..|++-..++++.|+...++|-++.+.+. +=.-+|+-.-+
T Consensus 297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~-Is~e~fe~mn~ 375 (622)
T COG5185 297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQG-ISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 34556665555555555555555666677777888888999999999999999999999888765431 22334444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHH
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQK-EKQRMEHADIANLKLLHECEILRNR 310 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~-Ekq~~e~~~~ar~KllhEc~iLr~R 310 (439)
.--+|-.||+..--++.+|-+.+-. +.+.++ .--+-.|.+....-|+.+
T Consensus 376 Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~-~~~slek~~~~~~sl~~~ 425 (622)
T COG5185 376 EREKLTRELDKINIQSDKLTKSVKSRKLEAQG-IFKSLEKTLRQYDSLIQN 425 (622)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444422 222222 222344445544444444
No 257
>PF14182 YgaB: YgaB-like protein
Probab=43.39 E-value=72 Score=27.39 Aligned_cols=49 Identities=27% Similarity=0.279 Sum_probs=35.3
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
++|-.|| .|+++|..|+..++ +....++..|....+++|..+++.|+.=
T Consensus 18 ~LQsElE----RCqeIE~eL~~l~~-----ea~l~~i~~EI~~mkk~Lk~Iq~~Fe~Q 66 (79)
T PF14182_consen 18 FLQSELE----RCQEIEKELKELER-----EAELHSIQEEISQMKKELKEIQRVFEKQ 66 (79)
T ss_pred HHHHHHH----HHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454554 57899999988754 4456778888888888888887777643
No 258
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=43.27 E-value=81 Score=24.34 Aligned_cols=17 Identities=35% Similarity=0.702 Sum_probs=11.3
Q ss_pred HHhHHHHHHHHhhhhcc
Q 039269 300 LLHECEILRNRLQECSV 316 (439)
Q Consensus 300 llhEc~iLr~RLQECn~ 316 (439)
-.+|.+.|||=+.||.+
T Consensus 27 Q~kE~~~LRntI~eC~a 43 (45)
T PF11598_consen 27 QIKETRFLRNTIMECQA 43 (45)
T ss_dssp HHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34677788888888853
No 259
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=43.16 E-value=39 Score=27.95 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
..|.+...+-|..+|+.++.|..+..+||+|
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~LE~~ 79 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAALEAQ 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5678888888889999999999999888875
No 260
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=43.10 E-value=3.4e+02 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHH
Q 039269 285 KEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 285 ~Ekq~~e~~~~ar~KllhEc~i 306 (439)
.+.++.+.....|..=+.+.+.
T Consensus 96 ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 96 EESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 261
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=43.08 E-value=52 Score=26.90 Aligned_cols=53 Identities=23% Similarity=0.174 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccc
Q 039269 262 QSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFL 319 (439)
Q Consensus 262 q~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l 319 (439)
+.-|+++|++.+..|.+++--.++... -.--.|=-.|+.-+..||+++-.+||
T Consensus 3 ~~~L~~QLd~I~~~K~~l~ik~~H~Ek-----l~kitK~p~El~~i~~kl~~~R~~FL 55 (62)
T PF06034_consen 3 NRSLTQQLDEINQMKRQLTIKSQHWEK-----LKKITKNPKELQEIEKKLQELRQNFL 55 (62)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH-----HHhccCCHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999988888441 22224455788999999999999998
No 262
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.63 E-value=3e+02 Score=25.73 Aligned_cols=141 Identities=16% Similarity=0.216 Sum_probs=69.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccch-hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDV-KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE 286 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~-KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E 286 (439)
....+.....++..+++.+....+.+..+-...=.+-+-|. +....+.+.+......+++.+.++...-..++.-|.+=
T Consensus 45 ~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l 124 (221)
T PF04012_consen 45 ALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEEL 124 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666666666666665544332211111111 23334455666666666666666666655555555444
Q ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhh
Q 039269 287 KQRMEHADIANLKLLH--ECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDI 361 (439)
Q Consensus 287 kq~~e~~~~ar~Kllh--Ec~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~ 361 (439)
+.+....+.-+.-++- ...-.+.++.+- +.+.++++|.+-|.--..||.-+-|+++....-.
T Consensus 125 ~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~-------------~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~el~ 188 (221)
T PF04012_consen 125 EAKLEELKSKREELKARENAAKAQKKVNEA-------------LASFSVSSAMDSFERMEEKIEEMEARAEASAELA 188 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCCccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333332222222221 111112222221 1122356666666666788888888888775555
No 263
>PF08926 DUF1908: Domain of unknown function (DUF1908); InterPro: IPR015022 This domain is found in microtubule-associated serine/threonine-protein kinases. ; GO: 0000287 magnesium ion binding, 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1V9V_A.
Probab=41.57 E-value=2.6e+02 Score=28.97 Aligned_cols=102 Identities=25% Similarity=0.245 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHH
Q 039269 186 KQLLETELKLKYEQDERARAESSKMSIIQENEM-LLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSE 264 (439)
Q Consensus 186 ~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~-l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~e 264 (439)
+++++||.+|+..=++.+- .....-..+=..= --|=++.+|++|.-.+... +
T Consensus 132 KAt~QMEErL~~fI~e~sp-~~~~~~aDgv~~FihHQivElARDCL~KS~~~l-------------I------------- 184 (282)
T PF08926_consen 132 KATAQMEERLQDFIDENSP-DNVLPLADGVLRFIHHQIVELARDCLQKSREGL-------------I------------- 184 (282)
T ss_dssp -TTHHHHHHHHHHHHHS-B-TTTB--S-HHHHHHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred hhhHHHHHHHHHHHHHcCc-cccccccHHHHHHHHHHHHHHHHHHHHHHhccC-------------c-------------
Confidence 3889999999998666652 1111111111111 1233455677765332221 1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHhHHHHH---HHHhhhhccccc
Q 039269 265 VKQELSRLMKEKLE-VEGVLQKEKQRMEHAD-IANLKLLHECEIL---RNRLQECSVNFL 319 (439)
Q Consensus 265 lkqEl~~~~~eK~e-lE~~L~~Ekq~~e~~~-~ar~KllhEc~iL---r~RLQECn~~~l 319 (439)
=++|+-|..| ||++|+.-++|.+-.. .--.+++...=+. =+||=||- .|-
T Consensus 185 ----Ts~YF~ElsEnLekLl~ea~erS~~~~~~~~~~lvrklL~IisRPARLLEcL-EFd 239 (282)
T PF08926_consen 185 ----TSRYFYELSENLEKLLQEAHERSESEEVAFVTQLVRKLLIIISRPARLLECL-EFD 239 (282)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHHHSS------------
T ss_pred ----hHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchhhhhhhh-ccC
Confidence 1567777664 8999999999994433 3334455444433 36888995 554
No 264
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=41.09 E-value=1.4e+02 Score=30.72 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=16.4
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 202 RARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 202 k~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
.-..-....+...+|+.|.++|.-.++.|-.+
T Consensus 113 n~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 113 NDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 33333444455555555555555555555554
No 265
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=41.06 E-value=5e+02 Score=28.12 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 246 TDVKLLVKEVKSLRSS---QSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 246 ad~KvLvKEVKsLR~s---q~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
.-++-+.+|+..|-+. ..+|++++.++.++..++-..|.+-|
T Consensus 329 ~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 329 EYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555443 45566677777777666666666555
No 266
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.95 E-value=6.3e+02 Score=29.24 Aligned_cols=182 Identities=20% Similarity=0.162 Sum_probs=88.9
Q ss_pred HHHHHHHHHhhhchHHHHHHhhHHHHHHHH-----------HHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 111 NNMQQRLTAAKADTEDLLARLNQEVAVRQF-----------LTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 111 ~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~f-----------L~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
..-..-..+|=-||+..+.+|.|+..=+|= ...++|-|..++.-+. +.++|.-.. =
T Consensus 453 l~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~----~~i~~l~~~---------~ 519 (698)
T KOG0978|consen 453 LSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLE----EQILTLKAS---------V 519 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---------H
Confidence 333344566778999999999999876651 2233444443333222 222222111 1
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
++..++.+- .|..+..+++......-....-.+-.+++......+.+-++.|+.+.++.+++ ++-+-..+--++
T Consensus 520 ~~~~~~i~~--leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~----le~i~~~~~e~~ 593 (698)
T KOG0978|consen 520 DKLELKIGK--LEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAK----LEQIQEQYAELE 593 (698)
T ss_pred HHHHHHHHH--HHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 222222222 22222222222222222223333334444444444455555555555544432 233333344455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 039269 260 SSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 260 ~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQ 312 (439)
.+...+++-.+++-.|...+.+.|.+=+ +.+....+-..|..|++.-++.|.
T Consensus 594 ~ele~~~~k~~rleEE~e~L~~kle~~k-~~~~~~s~d~~L~EElk~yK~~Lk 645 (698)
T KOG0978|consen 594 LELEIEKFKRKRLEEELERLKRKLERLK-KEESGASADEVLAEELKEYKELLK 645 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccccccccHHHHHHHHHHHhcee
Confidence 5555555555665555555555554433 222245567788888888888875
No 267
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=40.92 E-value=2.9e+02 Score=25.28 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=58.3
Q ss_pred hHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHH
Q 039269 124 TEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQ 199 (439)
Q Consensus 124 mEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~q 199 (439)
++.+-+.|. +.|..|+-++.-|...|+....-++..-.+.--. |+-+.++.-|++.+......||.++.+.+
T Consensus 52 l~~vs~~l~---~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v-~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 52 LEQVSESLS---STKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEV-REDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555443 6899999999999999998887777666665555 99999999999999999999999998764
No 268
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.65 E-value=4.2e+02 Score=27.13 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=28.4
Q ss_pred HHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 227 REQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 227 r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
+..++++.+.+.+||.+.. -|.++...|-.-+.++..-+..+-.++.+++.++
T Consensus 147 k~ile~qk~dk~~Le~kq~----~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~ 199 (265)
T COG3883 147 KKILEQQKEDKKSLEEKQA----ALEDKLETLVALQNELETQLNSLNSQKAEKNALI 199 (265)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776543 2444444444444444444444444444444443
No 269
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.12 E-value=1.6e+02 Score=24.36 Aligned_cols=58 Identities=34% Similarity=0.395 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 163 MQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 163 lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
.++|| +.|+-+|-..++|+.+..+.. ........+|+.|.+|-.+.+.-+..|=...+
T Consensus 13 i~~av----eti~~Lq~e~eeLke~n~~L~--------------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 13 IQQAV----ETIALLQMENEELKEKNNELK--------------EENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45555 357787777777777766555 33344466777777777776666666544443
No 270
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.09 E-value=1.2e+02 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.518 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 039269 219 LLQELEVVREQLEN 232 (439)
Q Consensus 219 l~qEL~~~r~~le~ 232 (439)
+.+++.+++.+++.
T Consensus 22 ~~~ei~~l~~~i~~ 35 (80)
T PF04977_consen 22 LNQEIAELQKEIEE 35 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 271
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.83 E-value=1.1e+02 Score=31.09 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
..|++.|+.||..++-.++.++.++.++|
T Consensus 148 ~~EkeeL~~eleele~e~ee~~erlk~le 176 (290)
T COG4026 148 QKEKEELLKELEELEAEYEEVQERLKRLE 176 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566665555555555555444443
No 272
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=39.61 E-value=85 Score=28.30 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=38.8
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
++.||.++.....++...-..-+.+.+-|..|++.|+++.+-|.
T Consensus 26 Lq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 26 LQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999888888888888999999999999999988764
No 273
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.57 E-value=1.3e+02 Score=28.06 Aligned_cols=53 Identities=21% Similarity=0.203 Sum_probs=33.4
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVRE 228 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~ 228 (439)
..+=++.+||.++..=...|+.+.....--+........|...|+..|...|-
T Consensus 58 ~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 58 DFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446888999998888888888555554444445555555555555554444
No 274
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=39.51 E-value=10 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=23.1
Q ss_pred HHHHHHhHHHHHHHHhhhhcccccccccc
Q 039269 296 ANLKLLHECEILRNRLQECSVNFLSEEED 324 (439)
Q Consensus 296 ar~KllhEc~iLr~RLQECn~~~l~ee~d 324 (439)
+-.-++-.|.-+|.||.||+..++.+..+
T Consensus 6 sld~lv~~cg~IrarleE~qa~i~~e~~~ 34 (51)
T PF07197_consen 6 SLDLLVVDCGSIRARLEEIQAQIPDELAK 34 (51)
T ss_pred hHHHHHhccchHHHHHHHHHHHhhHHHHH
Confidence 34457789999999999999998855543
No 275
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=39.20 E-value=5.9e+02 Score=28.42 Aligned_cols=127 Identities=22% Similarity=0.316 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHH
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEE 183 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeE 183 (439)
.+||+.++-|+. |-+|.+..+||-.|||.+-.=..-..+---|||.-|...- .-+ .+---+-.|++| + ++|-
T Consensus 242 ehv~km~kdle~-Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~-rl~-elreg~e~e~~r--k---elE~ 313 (575)
T KOG4403|consen 242 EHVNKMMKDLEG-LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAP-RLS-ELREGVENETSR--K---ELEQ 313 (575)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhh-hhh-hhhcchhHHHHH--H---HHHH
Confidence 457777777764 7789999999999999764332222222224444433100 000 011112222333 1 4555
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhh------------HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSI------------IQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~------------~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
||.++.+-|-.|..- ....+-..+++- .-+.+...++|..++++.|-|+|....+
T Consensus 314 lR~~L~kAEkele~n--S~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv 380 (575)
T KOG4403|consen 314 LRVALEKAEKELEAN--SSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSV 380 (575)
T ss_pred HHHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcch
Confidence 666555444433221 112222222222 2223345567778888888888776654
No 276
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=39.13 E-value=4.1e+02 Score=26.63 Aligned_cols=86 Identities=22% Similarity=0.279 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccch--hHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDV--KLLVKEVKSLR--SSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~--KvLvKEVKsLR--~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
.+.....++.+|+.++.+=..+-+ +++.++..|- .+|+.+-|..- .-..=..+||..+-.-...++.-+.++.
T Consensus 191 ~v~~Lr~~l~~l~~lk~eR~~~~~---~lk~~~~~ddI~~~ll~~~~~~~~~~~e~lf~~eL~kf~~~~~~i~~~~~~Q~ 267 (342)
T cd08915 191 VVSSLRPLLNEVSELEKERERFIS---ELEIKSRNNDILPKLITEYKKNGTTEFEDLFEEHLKKFDKDLTYVEKTKKKQI 267 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcCCcHHHHHHhhccccchhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344444444444444433333322 3333444442 45555555432 1122223344444444444555554444
Q ss_pred HHHHHHHHHHHHH
Q 039269 288 QRMEHADIANLKL 300 (439)
Q Consensus 288 q~~e~~~~ar~Kl 300 (439)
.....-+.++.+|
T Consensus 268 ~ll~~i~~~~~~f 280 (342)
T cd08915 268 ELIKEIDAANQEF 280 (342)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333344433
No 277
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=37.79 E-value=2.4e+02 Score=25.15 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
+|-.+..+||.++.....+=+........+..||..|+-|-+-+|+.+..+.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556778888888888888888888888899999999999988888887643
No 278
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=37.78 E-value=1.2e+02 Score=27.86 Aligned_cols=55 Identities=15% Similarity=0.457 Sum_probs=38.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECS 315 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn 315 (439)
..+||-.|+..+..++..+.+.+..+...+ +..++-..+=+|++.| +.+++..|-
T Consensus 4 ~~kEi~~l~~~lk~~~~~i~ailek~~s~~-------~~~e~lEsiAAKIIkD---isdkIdkCe 58 (121)
T PF03310_consen 4 IIKEISELIQELKKIESDIKAILEKLQSTE-------QDQENLESIAAKIIKD---ISDKIDKCE 58 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS---------HHHHHHHHHHHHHHH---HHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------chHHHHHHHHHHHHHH---HHHHHHhch
Confidence 467888888888888888887765544443 2456677777888888 677777774
No 279
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.44 E-value=4.1e+02 Score=27.08 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039269 217 EMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLE 278 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~e 278 (439)
.++++=.+..++..| |-.+..+.-+...+++|-+--|.-.||...+-+|.|++.+-.-.++
T Consensus 65 ~~l~etene~~~~ne-L~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 65 ADLRETENELVKVNE-LKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 344555555566666 6666677778888888888889999999988888888866444333
No 280
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=36.70 E-value=1.2e+02 Score=30.94 Aligned_cols=56 Identities=30% Similarity=0.337 Sum_probs=41.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqE 268 (439)
++....+++.+.-|+...++.++.|..+..-||-+ .|.|--||--||....+|.-.
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~----~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEM----LKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhchhHHHHHHHHHHHhccc
Confidence 34557888888888888888898888888877764 456667777777766665544
No 281
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=36.63 E-value=1.4e+02 Score=29.70 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=11.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~ 277 (439)
|..|+.+-.++.+|-++++++-.
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~ 203 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYS 203 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHH
Confidence 33444444555555555555433
No 282
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=36.60 E-value=83 Score=32.13 Aligned_cols=87 Identities=22% Similarity=0.375 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhhhhhhcccccc
Q 039269 292 HADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDIERSMTGLDKT 371 (439)
Q Consensus 292 ~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~E~~~~~~~~~ 371 (439)
....|...|+.||.-+-..+.+|--.+..- .+++ |+.||.+..+|+..++.|..+.++-.+....+
T Consensus 13 ~~~~~~~~l~~eCEe~wk~me~~q~kL~l~-----------~~e~---l~~s~~ql~ll~~~~k~L~aE~~qwqk~~pei 78 (268)
T PF11802_consen 13 DVTDAKEELIKECEELWKDMEECQNKLSLI-----------GTET---LTDSDAQLSLLMMRVKCLTAELEQWQKRTPEI 78 (268)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------CCCC---CCCcchhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 356678899999999999999998887522 2232 34888999999999999988887755544443
Q ss_pred cCCCCCC--CccHHHHHHHHHHH
Q 039269 372 CNANGSD--RRSDDELRQMLTDI 392 (439)
Q Consensus 372 ~~s~~~~--~~tddElRKmLaDl 392 (439)
-..+... ....+++.|..+|+
T Consensus 79 i~~n~~VL~~lgkeelqkl~~eL 101 (268)
T PF11802_consen 79 IPLNPEVLLTLGKEELQKLISEL 101 (268)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 3333211 13445555555443
No 283
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=36.24 E-value=1.4e+02 Score=29.14 Aligned_cols=52 Identities=23% Similarity=0.356 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 159 CKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 159 ~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
...++|=++.+||-|+.-+| ++++.+|... .++...|..||+.+...||+|.
T Consensus 106 e~Q~lql~L~eEr~Ry~rLQ----------qssD~~lD~L--------------r~qq~~Lq~qL~~T~RKLEnLT 157 (179)
T PF13942_consen 106 EQQVLQLQLSEERARYQRLQ----------QSSDSELDAL--------------RQQQQRLQYQLDTTTRKLENLT 157 (179)
T ss_pred HhHHHHHHHHHHHHHHHHHH----------HhhHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhh
Confidence 34567777888999987755 3344455554 7888889999999999999986
No 284
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=36.01 E-value=4.1e+02 Score=29.29 Aligned_cols=101 Identities=26% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 152 LETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 152 Lettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
+|++|..-+|.|..-+--=+ .++-|.|-||+++++ .|++.+-+---....------||--|-+.+++-++-|-
T Consensus 387 IEAMKnAhrEEmeRELeKsq----SvnsdveaLRrQyle---elqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLR 459 (593)
T KOG4807|consen 387 IEAMKNAHREEMERELEKSQ----SVNSDVEALRRQYLE---ELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALR 459 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhh----ccccChHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 232 NLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 232 ~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
.-+++-.||-+--.-=---|+-||-.||
T Consensus 460 qCQrEnQELnaHNQELnnRLaaEItrLR 487 (593)
T KOG4807|consen 460 QCQRENQELNAHNQELNNRLAAEITRLR 487 (593)
T ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHH
No 285
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=35.93 E-value=2.7e+02 Score=23.54 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=13.7
Q ss_pred hhhhccccchhHHHHHHHHHhhhhHHHHHHHHH
Q 039269 239 ESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 239 ElEakskad~KvLvKEVKsLR~sq~elkqEl~~ 271 (439)
++...-...++.+-.+|+.|-.+...+.++++.
T Consensus 63 ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~e 95 (105)
T cd00632 63 EARTELKERLETIELRIKRLERQEEDLQEKLKE 95 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444333
No 286
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=35.92 E-value=4.5e+02 Score=29.35 Aligned_cols=57 Identities=25% Similarity=0.229 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
.+++|-.+.+.++.|.-....+--..-.....+.++++++..||..+.+.+..|+++
T Consensus 421 RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDE 477 (518)
T PF10212_consen 421 RIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDE 477 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544433333333333444444444444444444444333
No 287
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=35.40 E-value=2.5e+02 Score=23.03 Aligned_cols=16 Identities=13% Similarity=0.478 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHHH
Q 039269 260 SSQSEVKQELSRLMKE 275 (439)
Q Consensus 260 ~sq~elkqEl~~~~~e 275 (439)
+++.-|.+.+...|.+
T Consensus 89 ~q~~~L~~~f~~~m~~ 104 (117)
T smart00503 89 AQTEKLRKKFKEVMNE 104 (117)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444333333
No 288
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=1.3e+02 Score=30.32 Aligned_cols=109 Identities=27% Similarity=0.275 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHH
Q 039269 270 SRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGL 349 (439)
Q Consensus 270 ~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~l 349 (439)
.....++.++++.+..+++..+..--- ..=+-||+-||+|++-|.-++- +|.|. +-+=|||-.+||.=.
T Consensus 67 ~~~~ae~~~l~~~~k~~~e~~eLkdk~-~rs~Ad~eNlr~R~~r~~edak-----~FaiQ----~f~kdLleVaD~Le~- 135 (236)
T KOG3003|consen 67 GPSLAEKALLEKVLKLEKEEQELKDKY-LRSLAECENLRDRTIRDVEDAK-----KFAIQ----SFCKDLLEVADNLEK- 135 (236)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHH----HHHHHHHHHHHHHHH-
Confidence 344455666666665555555544333 3346799999999999976553 34333 346778888887432
Q ss_pred HHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039269 350 LVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCAL 411 (439)
Q Consensus 350 LlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al 411 (439)
| ...+..-. .+. .-.+-|.|+|---..+++|+=+|.+++=
T Consensus 136 ----a----------~~~v~ee~-~~~-------d~~~~L~~l~eGl~mte~ql~~vf~KhG 175 (236)
T KOG3003|consen 136 ----A----------TECVKEES-EKE-------DQKKDLKDLFEGLSMTEAQLKEVFAKHG 175 (236)
T ss_pred ----H----------HHhcchhh-ccc-------ccchHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 1 11111111 111 2346789999999999999999888763
No 289
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=34.96 E-value=8.2e+02 Score=28.85 Aligned_cols=26 Identities=4% Similarity=0.166 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRLMK 274 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~~~ 274 (439)
+-...++..++......+..+.++..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (1047)
T PRK10246 293 RPHWERIQEQSAALAHTRQQIEEVNT 318 (1047)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444444444433
No 290
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=34.87 E-value=54 Score=27.77 Aligned_cols=45 Identities=29% Similarity=0.494 Sum_probs=35.3
Q ss_pred HHHHHHHhhhchHHHHHHhhHHH--HHHHHHHhhhhhhHHHHHHhhH
Q 039269 113 MQQRLTAAKADTEDLLARLNQEV--AVRQFLTTKVKDLEVELETTSE 157 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~--AVk~fL~tKVkDLEveLettkq 157 (439)
|...+..-+.|.+.|-+=|.+.. -||++|+...+.||.|+...++
T Consensus 1 ~~~~i~eL~~Dl~El~~Ll~~a~R~rVk~~L~~ei~klE~eI~~~~~ 47 (79)
T PF09032_consen 1 MSEQIEELQLDLEELKSLLEQAKRKRVKDLLTNEIRKLETEIKKLKE 47 (79)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHCHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677778888777666543 5999999999999999998876
No 291
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.85 E-value=2.4e+02 Score=22.93 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=24.7
Q ss_pred HhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 199 QDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 199 qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
+...-..++....+...|..|.+|++.++++++.++
T Consensus 24 k~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 24 KSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334444444448889999999999988888764
No 292
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=34.79 E-value=2e+02 Score=25.08 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhcccccccC--CCCCCCccHHHHHHHHHHHHHhh
Q 039269 345 NRIGLLVAETQLLAQDIERSMTGLDKTCN--ANGSDRRSDDELRQMLTDIFIDN 396 (439)
Q Consensus 345 nRI~lLlAEaQlL~~d~E~~~~~~~~~~~--s~~~~~~tddElRKmLaDlfiDN 396 (439)
+.|.-++.+.+-...+.+......+.... +..++.--++||.+++.++..+.
T Consensus 104 ~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~~~~dd~ele~eL~~l~~e~~~~~ 157 (171)
T PF03357_consen 104 DKVEKLMDDFQEEMEDQDEISEALSDSMDQVDDVDDEELEEELEQLEDEIEEEE 157 (171)
T ss_dssp CCHHHHHHHHHHHHHHHTS----------------TTSTTCHHHHHHHCCCTTS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence 44555555665555554443333333321 22333346778888887766554
No 293
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=34.66 E-value=1.1e+02 Score=27.65 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchh
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVK 249 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~K 249 (439)
..++...+..|.+.|++..++++.|++++...|+--..|.+
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~ 62 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYE 62 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788888888888888888888777765555443
No 294
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=34.65 E-value=5e+02 Score=26.70 Aligned_cols=126 Identities=29% Similarity=0.353 Sum_probs=68.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhh-------HHHHHHHHHHhhhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENC-------KENMQQAVLNEKER 173 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~-------ke~lqQAvl~EREr 173 (439)
++=--+-+-|.-.|.||.-.-|+.=. ++...+ --|+.+||-|.+|++.-..+. .+++- .+. |
T Consensus 23 ~eCEe~wk~me~~q~kL~l~~~e~l~-----~s~~ql-~ll~~~~k~L~aE~~qwqk~~peii~~n~~VL~--~lg-k-- 91 (268)
T PF11802_consen 23 KECEELWKDMEECQNKLSLIGTETLT-----DSDAQL-SLLMMRVKCLTAELEQWQKRTPEIIPLNPEVLL--TLG-K-- 91 (268)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCC-----CcchhH-HHHHHHHHHHHHHHHHHHhcCCCcCCCCHHHHH--HHH-H--
Confidence 33344555666667777555333211 112222 267888888999888655443 34443 111 2
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHhhhhhhhhcccc
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE-------LEVVREQLENLHKQHEESEVKSKT 246 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE-------L~~~r~~le~L~k~~~ElEakska 246 (439)
++|.+-+.++|+-|-..+ ..|+.|.+. |+.-++-+++|..++.|+..+..+
T Consensus 92 --------eelqkl~~eLe~vLs~~q--------------~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~ 149 (268)
T PF11802_consen 92 --------EELQKLISELEMVLSTVQ--------------SKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVET 149 (268)
T ss_pred --------HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345555666677666652 223333333 344466778888888888877654
Q ss_pred chhH-HHHHHHHHh
Q 039269 247 DVKL-LVKEVKSLR 259 (439)
Q Consensus 247 d~Kv-LvKEVKsLR 259 (439)
--.- .++|.|.=.
T Consensus 150 ~se~rv~~el~~K~ 163 (268)
T PF11802_consen 150 FSESRVFQELKTKI 163 (268)
T ss_pred cchHHHHHHHHHHH
Confidence 3332 235554433
No 295
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.61 E-value=2.9e+02 Score=23.51 Aligned_cols=89 Identities=25% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHH-HHHHhhhhhhHHHHHHhhHhhHH---HHHHHHHHhhhhhhhhhccH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVR-QFLTTKVKDLEVELETTSENCKE---NMQQAVLNEKERFTQMQWDM 181 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk-~fL~tKVkDLEveLettkqk~ke---~lqQAvl~EREr~tqmQWdm 181 (439)
++.+-.-++.-+..+..|+. |+.++|..++.| .=+...+.+|++.++...++..+ .++|---+ -+.++.|-=-.
T Consensus 5 f~~~~~~v~~el~~t~~d~~-LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~I-e~~V~~LE~~v 82 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYN-LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQI-EEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45556667777888888886 999999998876 33667788888888877776643 23333333 23444443344
Q ss_pred HHHHHHHHHHHHhhh
Q 039269 182 EELRKQLLETELKLK 196 (439)
Q Consensus 182 eElr~k~~e~E~~Lk 196 (439)
..|+.-+.+.|.++|
T Consensus 83 ~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 83 YELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445555555555544
No 296
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=34.22 E-value=7.4e+02 Score=28.10 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 217 EMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIA 296 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~a 296 (439)
.++.+||+.+..++-++++++ +.|. .+.-++-.|.-.|=++.-.+++++.-.--||.++-.+|+.=+++.
T Consensus 201 ~~~~KelrdtN~q~~s~~eel---~~kt-~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~------ 270 (596)
T KOG4360|consen 201 GDCVKELRDTNTQARSGQEEL---QSKT-KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQ------ 270 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhH------
Confidence 356777777777776666543 2222 234455556666666666666666666666666666666654332
Q ss_pred HHHHHhHHHHHHHHhhhhcccc
Q 039269 297 NLKLLHECEILRNRLQECSVNF 318 (439)
Q Consensus 297 r~KllhEc~iLr~RLQECn~~~ 318 (439)
+.+--|-+-|.++--||-.+|
T Consensus 271 -~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 271 -RQLTAELEELEDKYAECMQML 291 (596)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666665555
No 297
>PRK02793 phi X174 lysis protein; Provisional
Probab=34.19 E-value=2.4e+02 Score=23.08 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=0.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCccCCC
Q 039269 341 TTSDNRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCALNTYVKSDND 420 (439)
Q Consensus 341 aTSDnRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al~~~~~s~~~ 420 (439)
.+.++||.-| |.++-++++ +=++|.+.++.---+-.+|++++--+....-.........
T Consensus 4 ~~~e~Ri~~L--E~~lafQe~-------------------tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~~~~~ 62 (72)
T PRK02793 4 SSLEARLAEL--ESRLAFQEI-------------------TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPSNIAS 62 (72)
T ss_pred hhHHHHHHHH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCC
Q ss_pred CCCCCCchh
Q 039269 421 DGKEETPLR 429 (439)
Q Consensus 421 ~~~~~~~~~ 429 (439)
...+..|||
T Consensus 63 ~~~e~~PPH 71 (72)
T PRK02793 63 QAEETPPPH 71 (72)
T ss_pred CCCCCCcCC
No 298
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=34.08 E-value=1.8e+02 Score=30.70 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=6.5
Q ss_pred cchhHHHHHHHH
Q 039269 246 TDVKLLVKEVKS 257 (439)
Q Consensus 246 ad~KvLvKEVKs 257 (439)
++++.+.|+|+.
T Consensus 49 ~~rn~~sk~i~~ 60 (425)
T PRK05431 49 AERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHH
Confidence 345555566654
No 299
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=33.76 E-value=3.1e+02 Score=28.08 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEV 255 (439)
..+|+++..+...+..++.++.....-+ +.+++.+.+++|.
T Consensus 167 d~rnq~l~~~i~~l~~~l~~~~~~~~~~--~~~~~~~~~~~e~ 207 (264)
T PF07246_consen 167 DRRNQILSHEISNLTNELSNLRNDIDKF--QEREDEKILHEEL 207 (264)
T ss_pred hhHHHHHHHHHHHhhhhHHHhhchhhhh--hhhhhHHHHHHHH
Confidence 4455666655555555554444432222 4556666666663
No 300
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=33.57 E-value=3.1e+02 Score=23.69 Aligned_cols=68 Identities=24% Similarity=0.376 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHH
Q 039269 110 LNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLL 189 (439)
Q Consensus 110 l~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~ 189 (439)
...|.++.++ +.|++.|.+|+.. .-.+|..+|.++++.=. +.=++.++=.|.++|-.+.
T Consensus 24 ~~~l~~~~a~-~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt-------------~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 24 WLWLRRTYAK-REDIEKLEERLDE-------HDRRLQALETKLEHLPT-------------RDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHhhcc-HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCC-------------HHHHHHHHHHHHHHHhHHH
Confidence 4456777665 7788888777764 35566677777766532 3345666667777888888
Q ss_pred HHHHhhhhH
Q 039269 190 ETELKLKYE 198 (439)
Q Consensus 190 e~E~~Lks~ 198 (439)
.++..++..
T Consensus 83 ~l~~~l~~v 91 (106)
T PF10805_consen 83 ELSARLQGV 91 (106)
T ss_pred HHHHHHHHH
Confidence 888887766
No 301
>PTZ00464 SNF-7-like protein; Provisional
Probab=33.55 E-value=4.6e+02 Score=25.57 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=10.2
Q ss_pred hhhhhhccHHHHHHHHHHHHH
Q 039269 173 RFTQMQWDMEELRKQLLETEL 193 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~ 193 (439)
++...+|.|+.+.-.+.....
T Consensus 79 ~l~~q~~nleq~~~~ie~a~~ 99 (211)
T PTZ00464 79 MMMQQQFNMDQLQFTTESVKD 99 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444333
No 302
>PRK10698 phage shock protein PspA; Provisional
Probab=33.21 E-value=4.6e+02 Score=25.42 Aligned_cols=149 Identities=18% Similarity=0.181 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhhhccccchhHHHHHH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE--------ESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~--------ElEakskad~KvLvKEV 255 (439)
|+.-.++|+..|... ....+.+......+.++++..+...+.+.++-. .|=-.+-..++-....+
T Consensus 29 l~q~i~em~~~l~~~-------r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~ 101 (222)
T PRK10698 29 VRLMIQEMEDTLVEV-------RSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLI 101 (222)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 444455555554443 334556677777777777777776666654321 11112222333333445
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcc
Q 039269 256 KSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSD 335 (439)
Q Consensus 256 KsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sD 335 (439)
-.|+.++......+.++-.....|+.-|.+=|-+.. .-.||.+- .--+.++++-... + ..++
T Consensus 102 ~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~-~L~aR~~~----A~a~~~~~~~~~~----------~---~~~~ 163 (222)
T PRK10698 102 ATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ-ALMLRHQA----ASSSRDVRRQLDS----------G---KLDE 163 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHHHHHhC----------C---Ccch
Confidence 666666666666666665555556555554432221 12222221 1112223322221 1 3467
Q ss_pred hhhhhhccchhHHHHHHHHhhh
Q 039269 336 AVDLLTTSDNRIGLLVAETQLL 357 (439)
Q Consensus 336 AldLLaTSDnRI~lLlAEaQlL 357 (439)
|+..+..-.++|.-+-|+|+-+
T Consensus 164 a~~~f~rmE~ki~~~Ea~aea~ 185 (222)
T PRK10698 164 AMARFESFERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHhHh
Confidence 7888888899999999999986
No 303
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.20 E-value=4.1e+02 Score=24.82 Aligned_cols=83 Identities=27% Similarity=0.199 Sum_probs=19.9
Q ss_pred hhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH
Q 039269 143 TKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE 222 (439)
Q Consensus 143 tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE 222 (439)
.++-.|..||......+-++-||.+-. .=.+.+++.++.+.+..|...+.+.... ..+...+..+
T Consensus 74 ~~~~~l~~ELael~r~~~el~~~L~~~--------~~~l~~l~~~~~~~~~~l~~l~~~~~~L-------~~~~~~l~~~ 138 (194)
T PF08614_consen 74 QKLAKLQEELAELYRSKGELAQQLVEL--------NDELQELEKELSEKERRLAELEAELAQL-------EEKIKDLEEE 138 (194)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccc--------ccccchhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 566667777777766666655554433 2233446666666555555554433333 3344444444
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 039269 223 LEVVREQLENLHKQHEES 240 (439)
Q Consensus 223 L~~~r~~le~L~k~~~El 240 (439)
|....+.++.|+.+|..+
T Consensus 139 l~ek~k~~e~l~DE~~~L 156 (194)
T PF08614_consen 139 LKEKNKANEILQDELQAL 156 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 304
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.04 E-value=2e+02 Score=23.60 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=13.4
Q ss_pred hhhhhhccHHHHHHHHHHHHHhhhhH
Q 039269 173 RFTQMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~~Lks~ 198 (439)
.|.+++=..+-|..+-+.....+|..
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKL 38 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKL 38 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44454444555555555555555555
No 305
>PLN02678 seryl-tRNA synthetase
Probab=32.82 E-value=1.9e+02 Score=31.20 Aligned_cols=13 Identities=38% Similarity=0.445 Sum_probs=6.5
Q ss_pred cchhHHHHHHHHH
Q 039269 246 TDVKLLVKEVKSL 258 (439)
Q Consensus 246 ad~KvLvKEVKsL 258 (439)
++++.+.|+|+.+
T Consensus 54 ~erN~~sk~I~~~ 66 (448)
T PLN02678 54 KEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555555543
No 306
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=32.81 E-value=1.9e+02 Score=22.90 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
+..+-..+=+++|+..-+.+||..+++. .-+.+.........++.+|+.++++|+
T Consensus 24 ~~~i~~~e~~l~ea~~~l~qMe~E~~~~------p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 24 KSLIREIERDLDEAEELLKQMELEVRSL------PPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTS-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC------CHHHHHHHHHHHHHHHHHHHHHHHHhc
No 307
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=32.75 E-value=8.5e+02 Score=28.39 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh--hcccc
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLM-------KEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE--CSVNF 318 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~-------~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE--Cn~~~ 318 (439)
+.-+-+|++-|+.....|..+|+..= .+-..+-.-.-+-+-..+...+...+.-.+|.-|..+|+- |+.+|
T Consensus 467 le~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~ 546 (775)
T PF10174_consen 467 LETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAEL 546 (775)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhh
Confidence 34455566666666655555554322 1112222222233334566778888888999999998876 11222
Q ss_pred cccccccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHH
Q 039269 319 LSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNAR 398 (439)
Q Consensus 319 l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~ 398 (439)
. +||..|=.++--+..+.+.+.. -=|-|+.||-.+--+.-.
T Consensus 547 ~-------------------------~r~~~Le~ev~~~~ee~~kaq~--------------EVERLl~~L~~~E~EK~~ 587 (775)
T PF10174_consen 547 R-------------------------DRIQQLEQEVTRYREESEKAQA--------------EVERLLDILREAENEKND 587 (775)
T ss_pred c-------------------------chHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHh
Confidence 1 5777777777665555433332 224567777777777777
Q ss_pred HHHHHHHHHHH
Q 039269 399 LRMQVNTVIRC 409 (439)
Q Consensus 399 LRkqvNSv~R~ 409 (439)
+=+.|+.+-..
T Consensus 588 ke~ki~~Leke 598 (775)
T PF10174_consen 588 KEKKIGELEKE 598 (775)
T ss_pred HHHHHHHHHHH
Confidence 75555544443
No 308
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.67 E-value=3.4e+02 Score=26.11 Aligned_cols=84 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
.....+....+.++|..++++++.+.++..-........++-|-+.-+.+=...-++.....+.-.+-.++++-..+.++
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHH
Q 039269 289 RMEH 292 (439)
Q Consensus 289 ~~e~ 292 (439)
..+.
T Consensus 218 ~~~~ 221 (221)
T PF05700_consen 218 NQQQ 221 (221)
T ss_pred cccC
No 309
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=32.63 E-value=4e+02 Score=31.65 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=39.2
Q ss_pred hhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhccccchhHHH
Q 039269 196 KYEQDERARAESSKMSIIQENEMLLQELEVV-----------REQLENLHKQHEESEVKSKTDVKLLV 252 (439)
Q Consensus 196 ks~qdek~~~e~~~~s~~~e~~~l~qEL~~~-----------r~~le~L~k~~~ElEakskad~KvLv 252 (439)
..+++..+..+-.+.....|.++++.||... ++++.+|..++..++.+-.+..|++-
T Consensus 505 ~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~ 572 (913)
T KOG0244|consen 505 EQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIK 572 (913)
T ss_pred HHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 3445555566666666777788888888765 56677777777777777777766653
No 310
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.56 E-value=7.9e+02 Score=27.94 Aligned_cols=69 Identities=22% Similarity=0.172 Sum_probs=44.9
Q ss_pred HHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 192 ELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 192 E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
+.++-..|...+-..+.-++-.+.+..+.-||..+-..++-..++-++.-.+.+++++-|.+++..|--
T Consensus 438 ~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l 506 (581)
T KOG0995|consen 438 ENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKL 506 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555555666666667777777778888888889999999888876643
No 311
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=32.47 E-value=3.2e+02 Score=23.38 Aligned_cols=104 Identities=22% Similarity=0.279 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhhHHHHHHhhHhhHHHH---HHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhH
Q 039269 137 VRQFLTTKVKDLEVELETTSENCKENM---QQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSII 213 (439)
Q Consensus 137 Vk~fL~tKVkDLEveLettkqk~ke~l---qQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~ 213 (439)
....+..+|..|...-+...+.+.+.. ++++ .-...| ++.-++..-+.+.|..|....... .-.......
T Consensus 73 ~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~-~~~~~~----~~~~~l~~wl~~~e~~l~~~~~~~--~~~~~~~~l 145 (213)
T cd00176 73 DAEEIQERLEELNQRWEELRELAEERRQRLEEAL-DLQQFF----RDADDLEQWLEEKEAALASEDLGK--DLESVEELL 145 (213)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----HHHHHHHHHHHHHHHHhcCcccCC--CHHHHHHHH
Confidence 455666666666666555555443322 2221 111111 122223334444444444332111 122344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039269 214 QENEMLLQELEVVREQLENLHKQHEESEVKSKTD 247 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad 247 (439)
.+.+.+..++...+..++.+......+-......
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (213)
T cd00176 146 KKHKELEEELEAHEPRLKSLNELAEELLEEGHPD 179 (213)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCCC
Confidence 5555666666666666666666666665555443
No 312
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=32.08 E-value=7.5e+02 Score=27.53 Aligned_cols=153 Identities=20% Similarity=0.266 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhhhhh---------------hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH
Q 039269 162 NMQQAVLNEKERFTQ---------------MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVV 226 (439)
Q Consensus 162 ~lqQAvl~EREr~tq---------------mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~ 226 (439)
-++|...-|+|-|-+ =|-.+|-||+..-+||-+|..+|. --. +-|.+-+|.+
T Consensus 147 ~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqE------alv-------N~LwKrmdkL 213 (552)
T KOG2129|consen 147 PLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQE------ALV-------NSLWKRMDKL 213 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHH------HHH-------HHHHHHHHHH
Confidence 356666666654432 145566777777777777665521 111 2233334444
Q ss_pred HHHHHHHHhhhhh---------------------hhhccccchhHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHH
Q 039269 227 REQLENLHKQHEE---------------------SEVKSKTDVKLLVKEVKSLRSSQ----SEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 227 r~~le~L~k~~~E---------------------lEakskad~KvLvKEVKsLR~sq----~elkqEl~~~~~eK~elE~ 281 (439)
.+.--.|++.|++ -+ --++-+.+|--||-.||... .+-..++-||..|+...+.
T Consensus 214 e~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~-~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~re 292 (552)
T KOG2129|consen 214 EQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAA-AEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHRE 292 (552)
T ss_pred HHHHHHHHHHhcCcccCCCchhhhhcCccccCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444445544432 22 22455667888888777654 4444455566666554433
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhHHHHHHHHhhhhccccccccccccee
Q 039269 282 VLQKEKQRMEH---ADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTV 328 (439)
Q Consensus 282 ~L~~Ekq~~e~---~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~v 328 (439)
-.-++..+-.+ .+.|.-..+.|-+-+..-+.|--+|-..+-+|.+-|
T Consensus 293 en~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~V 342 (552)
T KOG2129|consen 293 ENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVEV 342 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCceee
Confidence 32222211111 122334455666666666666666666666665544
No 313
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=32.05 E-value=1.6e+02 Score=29.18 Aligned_cols=51 Identities=29% Similarity=0.427 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
.|||||++++-..+.|.. ++..+..|..--.+++..+.+.+....++.+|.
T Consensus 2 s~EELRq~Ll~TTlELE~----------~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEA 52 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEA----------TKMEANEELRKREEQIAHLKDLLKKAYQERDEA 52 (214)
T ss_pred CHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999988766555533 344445555555555555555555555555553
No 314
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=31.72 E-value=2.9e+02 Score=29.82 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHhhhhcc
Q 039269 249 KLLVKEVKSLRSSQ--SEVKQELSRLMKEKLEVEGVLQKEKQR-----MEHADIANLKLLHECEILRNRLQECSV 316 (439)
Q Consensus 249 KvLvKEVKsLR~sq--~elkqEl~~~~~eK~elE~~L~~Ekq~-----~e~~~~ar~KllhEc~iLr~RLQECn~ 316 (439)
+.|++.+++||... .++-|. +.++=|.=..=+..+..+- .+=....++-+.+=.+--..+|.-+.+
T Consensus 147 ~fl~~kI~~lr~~~tn~q~iQ~--~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~Y~~~F~~Y~~~L~kl~~ 219 (508)
T PF04129_consen 147 DFLLKKIKSLRKPKTNSQIIQQ--VLLKYKELFQFLKKHSPELAKELRQAYVETMSWYYSSYFKRYIRSLEKLQL 219 (508)
T ss_pred HHHHHHHHHHcCCCCchHHHHH--HHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999865 455554 5555444344444444332 222334444444444444455544443
No 315
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=31.67 E-value=5.2e+02 Score=25.61 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhhh
Q 039269 134 EVAVRQFLTTKVKD 147 (439)
Q Consensus 134 E~AVk~fL~tKVkD 147 (439)
..|+.-|-...++|
T Consensus 79 ~~A~~~F~~~s~~d 92 (297)
T PF02841_consen 79 KEALEVFMKRSFGD 92 (297)
T ss_dssp HHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCc
Confidence 34666666666665
No 316
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=31.66 E-value=4e+02 Score=28.16 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhhhhhhcc--------ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 039269 227 REQLENLHKQHEESEVKS--------KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE--KQRMEHADIA 296 (439)
Q Consensus 227 r~~le~L~k~~~ElEaks--------kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E--kq~~e~~~~a 296 (439)
.+.++.+.+++.++|... .+..+-+.||.+.|+.....+.+ +.....+..++..+++.| .+..+.+...
T Consensus 5 ~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~-~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e 83 (359)
T PRK00591 5 LDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYRE-YKQAQEDLEEAKEMLEEESDPEMREMAKEE 83 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 344455555555555432 22334567888888877665554 556667777777777543 2333444444
Q ss_pred HHHHHhHHHHHHHHhh
Q 039269 297 NLKLLHECEILRNRLQ 312 (439)
Q Consensus 297 r~KllhEc~iLr~RLQ 312 (439)
-.++-.++.-|...|+
T Consensus 84 ~~~l~~~l~~~e~~l~ 99 (359)
T PRK00591 84 LKELEERLEELEEELK 99 (359)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666655553
No 317
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=31.61 E-value=2.7e+02 Score=24.13 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLEN 232 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~ 232 (439)
.....++..|.+|+..+|+|++.
T Consensus 20 ~~~~~e~~~L~eEI~~Lr~qve~ 42 (86)
T PF12711_consen 20 SYLEEENEALKEEIQLLREQVEH 42 (86)
T ss_pred chhHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777777777777764
No 318
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.39 E-value=7.8e+02 Score=27.52 Aligned_cols=124 Identities=27% Similarity=0.346 Sum_probs=55.0
Q ss_pred hHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhH
Q 039269 124 TEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERA 203 (439)
Q Consensus 124 mEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~ 203 (439)
-+..+++|-+---.+.-|..-.+|=|.-|+...++-++.-+| ++-.|| ||+ +-|.-+.+-=+.|+...+
T Consensus 267 ~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~-----~~~ltq-qwe--d~R~pll~kkl~Lr~~l~--- 335 (521)
T KOG1937|consen 267 FEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQ-----MEELTQ-QWE--DTRQPLLQKKLQLREELK--- 335 (521)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHH-----HHHHHH-HHH--HHhhhHHHHHHHHHHHHh---
Confidence 344555555555555555555555555555555544333222 222455 553 344443333333332211
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhhhhhhhhccc-cchhHHHHHHHHHh
Q 039269 204 RAESSKMSIIQENEMLLQELEVVREQLE----NLHKQHEESEVKSK-TDVKLLVKEVKSLR 259 (439)
Q Consensus 204 ~~e~~~~s~~~e~~~l~qEL~~~r~~le----~L~k~~~ElEaksk-ad~KvLvKEVKsLR 259 (439)
..|..-.. .++.+.+.++|.++-++.+ .-.+=+.++|-..+ +.+|++..=+|-+=
T Consensus 336 ~~e~e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~ 395 (521)
T KOG1937|consen 336 NLETEDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEID 395 (521)
T ss_pred cccchHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 11111111 4555555566655544433 12233445554444 33666655544443
No 319
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=31.32 E-value=1.9e+02 Score=30.07 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHHhhhhccccc
Q 039269 299 KLLHECEILRNRLQECSVNFL 319 (439)
Q Consensus 299 KllhEc~iLr~RLQECn~~~l 319 (439)
++.+-|.-|-+|.+-||+-+.
T Consensus 176 ~l~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 176 KLEDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp HHHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHHHhhccCCceeEE
Confidence 456778999999999999886
No 320
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=31.24 E-value=3.2e+02 Score=22.97 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 272 LMKEKLEVEGVLQKEKQRMEHADIANLKLL 301 (439)
Q Consensus 272 ~~~eK~elE~~L~~Ekq~~e~~~~ar~Kll 301 (439)
.-.-+..+|+.|+.|+=-...|.+=.+.+|
T Consensus 36 ~~~ik~~~eK~L~~E~~LK~QAVNKLAEIM 65 (69)
T PF08912_consen 36 IEEIKAQYEKQLNTERTLKQQAVNKLAEIM 65 (69)
T ss_dssp HHCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344457788889999877777766555554
No 321
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.23 E-value=90 Score=25.89 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 039269 382 DDELRQMLTDIFIDNARLRMQVNTVIRCALN 412 (439)
Q Consensus 382 ddElRKmLaDlfiDNA~LRkqvNSv~R~Al~ 412 (439)
=.++++|++-.==+|+.|+.+||.+.+..-.
T Consensus 30 y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 30 YADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999987543
No 322
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.22 E-value=6e+02 Score=26.15 Aligned_cols=133 Identities=23% Similarity=0.273 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHH--hhHhhHHHHHH--HHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhh
Q 039269 133 QEVAVRQFLTTKVKDLEVELET--TSENCKENMQQ--AVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESS 208 (439)
Q Consensus 133 QE~AVk~fL~tKVkDLEveLet--tkqk~ke~lqQ--Avl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~ 208 (439)
+-...|.|++.=+=++=.+|.. +++=++..+-- +++. =++.++-+++-||.++-|.=.+.+.+. .
T Consensus 119 kS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~---DLesa~vkV~WLR~~L~Ei~Ea~e~~~--------~ 187 (269)
T PF05278_consen 119 KSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLK---DLESAKVKVDWLRSKLEEILEAKEIYD--------Q 187 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHH---HHHHcCcchHHHHHHHHHHHHHHHHHH--------H
Confidence 3455677777777777666643 24444444422 2332 366778888889998887544443331 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
......+++.....|...+..++.+..+. |-.-+|||-+|..-++++..|.++..+-+.+.+.+--=+
T Consensus 188 ~~~~e~eke~~~r~l~~~~~ELe~~~EeL-----------~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~ 255 (269)
T PF05278_consen 188 HETREEEKEEKDRKLELKKEELEELEEEL-----------KQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIK 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12234455555555666666665554443 334478888999999999999998888888777654433
No 323
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.17 E-value=3.6e+02 Score=29.25 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHH
Q 039269 214 QENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl 269 (439)
.+.-.+..+++.++..-..++++....=++-..+...|..|+|.|.....++..++
T Consensus 36 ~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~ 91 (429)
T COG0172 36 EERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAAL 91 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHH
Confidence 33334444444444444445555441111111133445555555555544444433
No 324
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.09 E-value=5.3e+02 Score=25.44 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELR 185 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr 185 (439)
|...+.-|+.-|..|+.-...+|++=-+-.-=-+=+..-+.++|.--.--.+++.|.|--.++.
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~---------------- 92 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALE---------------- 92 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH----------------
Q ss_pred HHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 186 KQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 186 ~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
.-+.+|..++.. ..+...+.+-++.++.++..|...+.+++++
T Consensus 93 -~~~~le~~~~~~--------------~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~ 135 (225)
T COG1842 93 -EKQSLEDLAKAL--------------EAELQQAEEQVEKLKKQLAALEQKIAELRAK 135 (225)
T ss_pred -HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 325
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.87 E-value=7.6e+02 Score=27.24 Aligned_cols=94 Identities=20% Similarity=0.177 Sum_probs=46.2
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccc
Q 039269 246 TDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVE---GVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEE 322 (439)
Q Consensus 246 ad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE---~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee 322 (439)
|.-|-|.+-|.-+++-+-..-+|+..+-+++.+.+ -+|+.+++++.- ...-.+.+-....=--|.|+-----+--+
T Consensus 76 a~~~~~t~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~-~e~la~~~~~l~~~~~r~~s~~ga~~~~~ 154 (459)
T KOG0288|consen 76 ATEKTLTVDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRI-AERLAEALKDLGLKDLRRQSVDGAVPRTE 154 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHH-HHHHHHHhhhcchhhhhhhhhcCCCcccc
Confidence 34455555555666666666666666667776654 355555433322 22222233333333334444333333333
Q ss_pred cccceecCCCCcchhhhhh
Q 039269 323 EDKLTVDTSSPSDAVDLLT 341 (439)
Q Consensus 323 ~d~l~vd~Ss~sDAldLLa 341 (439)
+ -+.|..+-||-|.+-|.
T Consensus 155 ~-d~~v~~~lpS~~~~~ld 172 (459)
T KOG0288|consen 155 D-DHFVEDTLPSRALFVLD 172 (459)
T ss_pred C-chhhhcccchhhhhhhh
Confidence 3 35566665766655443
No 326
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=30.58 E-value=7.5e+02 Score=27.06 Aligned_cols=74 Identities=27% Similarity=0.374 Sum_probs=49.6
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHH--hhhhhhh
Q 039269 99 PSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLN--EKERFTQ 176 (439)
Q Consensus 99 P~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~--EREr~tq 176 (439)
|.|+-.||-.+-+.||+|.+. |+ +|.----..=|+|||.+-+.--|-.++.+-=..+- |||+++|
T Consensus 87 pl~iL~~mM~qcKnmQe~~~s-------~L------aAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~Q 153 (561)
T KOG1103|consen 87 PLDILDKMMAQCKNMQENAAS-------LL------AAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQ 153 (561)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-------HH------HHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHH
Confidence 889999999999999998643 11 22222222347999999999888888876655554 5666765
Q ss_pred -hhccHHHHH
Q 039269 177 -MQWDMEELR 185 (439)
Q Consensus 177 -mQWdmeElr 185 (439)
+-|..++-+
T Consensus 154 QiEFe~~e~k 163 (561)
T KOG1103|consen 154 QIEFEIEEKK 163 (561)
T ss_pred HHHHHHHHHH
Confidence 344444444
No 327
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.51 E-value=1.4e+02 Score=31.86 Aligned_cols=59 Identities=20% Similarity=0.288 Sum_probs=33.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT 246 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska 246 (439)
|++++.|=.++.|+|-..|+=.-.+.. ..+.+.|.|++-.++++.+.|.....| |..|+
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL--------------~~~~etLEqq~~~L~~niDIL~~k~~e--al~~~ 283 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKL--------------VAMKETLEQQLQSLQKNIDILKSKVRE--ALEKA 283 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHH--------------HHHHHHHHHHHHHHHhhhHHHHHHHHH--HHhhh
Confidence 455555555666666554443333332 555666666666667777777666555 44443
No 328
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=30.47 E-value=2e+02 Score=25.93 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=24.7
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 039269 203 ARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKT 246 (439)
Q Consensus 203 ~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakska 246 (439)
...|.......+..+.|.+|++.....++.-.+.+.+|+..+++
T Consensus 30 ~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~ 73 (160)
T PF13094_consen 30 RALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKA 73 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445566666666666666666666666666554433
No 329
>PHA03011 hypothetical protein; Provisional
Probab=30.43 E-value=1.9e+02 Score=26.35 Aligned_cols=54 Identities=22% Similarity=0.191 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
+|+||.++-++=-.-+...++....+---+.-..+.+-|+.|+|.+++++-+++
T Consensus 66 ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~s 119 (120)
T PHA03011 66 LDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANLS 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhccC
Confidence 577888887776666666677776676667777788888888888888877653
No 330
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=30.36 E-value=1.4e+02 Score=24.17 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=5.2
Q ss_pred HHHHHHHHHHhhh
Q 039269 184 LRKQLLETELKLK 196 (439)
Q Consensus 184 lr~k~~e~E~~Lk 196 (439)
++.++..+...+.
T Consensus 10 l~~~l~~~~~q~~ 22 (106)
T PF01920_consen 10 LNQQLQQLEQQIQ 22 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 331
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.35 E-value=3e+02 Score=30.35 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=42.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE-KLEVEGVLQK 285 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e-K~elE~~L~~ 285 (439)
-+..+++.+...++.++..+..+= |-|.+|-+.||..+..+.+...+.+.- ..++. +
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N------------------~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~----~ 116 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISEN------------------EALKAENERLQKREQSIDQQIQQAVQSETQELT----K 116 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH----H
Confidence 344555555555555554444433 344555566677666666666666533 22221 1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 286 EKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 286 Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
| .+..+..+.++...+.-|..||..
T Consensus 117 ~---~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 117 E---IEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 222333444566666667778753
No 332
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=30.07 E-value=1.7e+02 Score=23.55 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=29.0
Q ss_pred HhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 199 QDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 199 qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
+++=...+++..++..|++.+..+++.+.+-+..|-.=|+
T Consensus 6 En~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE 45 (55)
T PF05377_consen 6 ENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYE 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788899999988888888877755554
No 333
>PF15186 TEX13: Testis-expressed sequence 13 protein family
Probab=29.87 E-value=1.8e+02 Score=27.62 Aligned_cols=61 Identities=28% Similarity=0.327 Sum_probs=38.8
Q ss_pred HHHHHhhhhhhhhccccchhHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 039269 230 LENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQS-EVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILR 308 (439)
Q Consensus 230 le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~-elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr 308 (439)
+.-|+.+.++=++-+ -.|+-|+|-||.++- |-|+-..|+ ..++++..+.+.||.+||
T Consensus 87 V~~Lqd~~~~hksa~----~aLas~L~~Lr~q~e~e~keaa~qL------------------~~~~a~L~~v~~ERD~Lr 144 (152)
T PF15186_consen 87 VQWLQDQAEEHKSAA----WALASELKRLREQREMERKEAAFQL------------------QLTQAALQEVQKERDLLR 144 (152)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 444555555544443 469999999998773 222222222 136677788889999999
Q ss_pred HHhh
Q 039269 309 NRLQ 312 (439)
Q Consensus 309 ~RLQ 312 (439)
.||=
T Consensus 145 ~kLl 148 (152)
T PF15186_consen 145 WKLL 148 (152)
T ss_pred HHHH
Confidence 9873
No 334
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=29.45 E-value=1e+03 Score=28.26 Aligned_cols=49 Identities=27% Similarity=0.463 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCccCCCCCCCCCchhhHHHhhh
Q 039269 384 ELRQMLTDIFIDNARLRMQVNTVIRCALNTYVKSDNDDGKEETPLRKTVLSRF 436 (439)
Q Consensus 384 ElRKmLaDlfiDNA~LRkqvNSv~R~Al~~~~~s~~~~~~~~~~~~~t~ls~~ 436 (439)
-++|.|+|+=.|+|+ +|.=|++++..|+.|-+--..+ -.+++--+|+.+
T Consensus 551 Sma~lL~dls~D~ar-~Kp~~nLTKSLLniyEkqlQ~d---p~p~~tSIMsYL 599 (861)
T PF15254_consen 551 SMAKLLSDLSVDSAR-CKPGNNLTKSLLNIYEKQLQHD---PAPAHTSIMSYL 599 (861)
T ss_pred HHHHHhhhccccccc-cCCcchhHHHHHHHHHHhhcCC---CCCccchHHHHH
Confidence 356889999999999 8999999999999996654433 445555555543
No 335
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=29.41 E-value=4e+02 Score=23.51 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=28.7
Q ss_pred hHHHHHHhhHHHHHHHHHH--hhhhhhHHHHHHhhHhhHHH
Q 039269 124 TEDLLARLNQEVAVRQFLT--TKVKDLEVELETTSENCKEN 162 (439)
Q Consensus 124 mEDLiaRLnQE~AVk~fL~--tKVkDLEveLettkqk~ke~ 162 (439)
+++|-.=|+.+-.+..|+. ..|+++....+.++..++.-
T Consensus 6 ~~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~l 46 (150)
T PF07200_consen 6 TEELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEEL 46 (150)
T ss_dssp THHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 4667777888888999988 55999999999888877653
No 336
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=29.36 E-value=4.2e+02 Score=28.02 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhhhcc--------ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 230 LENLHKQHEESEVKS--------KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 230 le~L~k~~~ElEaks--------kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
++.+.+++.++|.+. .+...-+.||...|..-...+++ +.+..++..++..++..
T Consensus 25 l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~-~~~~~~d~~~l~el~~~ 87 (364)
T TIGR00020 25 PEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEE-LKNSLEDLSELLELAVE 87 (364)
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 445555666666433 22234566777777666555544 56666777777777644
No 337
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.35 E-value=1.1e+03 Score=28.79 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELR 185 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr 185 (439)
+.|-|...+.++-.-++-|+-+-.|.....-=+.+.. +++-|..=. +.+-.++.++ +-
T Consensus 730 i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~--ir~Yee~~~-~~~~a~k~~e-------------------f~ 787 (1141)
T KOG0018|consen 730 IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVR--IREYEEREL-QQEFAKKRLE-------------------FE 787 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCee--eehHHHHHH-HHHHHHHHHH-------------------HH
Q ss_pred HHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHH
Q 039269 186 KQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEV 265 (439)
Q Consensus 186 ~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~el 265 (439)
.+..-.|..|..+.+ ........-.-...+.+..|++-.+++.+-.-+...++ ++-.. |- -..+--.+.--.+.
T Consensus 788 ~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~--k~-k~~~~~~~~e~~e~ 861 (1141)
T KOG0018|consen 788 NQKAKLENQLDFEKQ--KDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK--KN-KSKFEKKEDEINEV 861 (1141)
T ss_pred HHHHHHhhhhhheec--ccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH--HH-HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039269 266 KQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 266 kqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~i 306 (439)
++.+.+++++++-|.+=+..=.-..|+-..-|.-+|+-|.+
T Consensus 862 ~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL~~ckl 902 (1141)
T KOG0018|consen 862 KKILRRLVKELTKLDKEITSIESKIERKESERHNLLSKCKL 902 (1141)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhh
No 338
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.15 E-value=45 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.378 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 039269 215 ENEMLLQELEVVREQLENLHKQHEESEVKSK 245 (439)
Q Consensus 215 e~~~l~qEL~~~r~~le~L~k~~~ElEaksk 245 (439)
+.++|.+||+.+++|+..++++.+++|.++-
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~~s~ 62 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEKHSA 62 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhHhhh
Confidence 5566666666666666666666666666553
No 339
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=29.00 E-value=9.8e+02 Score=28.95 Aligned_cols=98 Identities=18% Similarity=0.274 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHH------------HHhhhhHHHHHHH-HHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVK------------SLRSSQSEVKQEL-SRLMKEKL 277 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVK------------sLR~sq~elkqEl-~~~~~eK~ 277 (439)
.+..+.....++|+...+-|..|+...+- +-+++++..|++ +.+++..+.+.+- .|--.+..
T Consensus 773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~-----r~~~~~~~~~a~~c~~ll~~a~~~~~~Aq~e~e~er~~kq~~~~~a 847 (1018)
T KOG2002|consen 773 RTLEEVLEAVKELEEARRLFTELSKNGDK-----RISKTVIAQEAQLCKDLLKQALEHVAQAQEEDEEERRAKQEKEEEA 847 (1018)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56777777888888888888888776554 677788887765 4445544444330 01111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 278 EVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 278 elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
-.++.+.+++++.|..+.-|.|+...=.-.+.|=++
T Consensus 848 ~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~ 883 (1018)
T KOG2002|consen 848 LIEKELEEARRKEEEEKARREKLEKQREEYRERTKE 883 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666555555544433
No 340
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=28.88 E-value=4.9e+02 Score=24.42 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 259 RSSQSEVKQELSRLMKEKLEVEGVLQ 284 (439)
Q Consensus 259 R~sq~elkqEl~~~~~eK~elE~~L~ 284 (439)
++=.--|++||+-+..||.-||.||+
T Consensus 33 ~~l~eaL~~ELDsL~~EkvhLeeiln 58 (134)
T PF15233_consen 33 QALWEALQRELDSLNGEKVHLEEILN 58 (134)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33334455555555555555555555
No 341
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=28.87 E-value=19 Score=39.25 Aligned_cols=98 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccch----hHHHHHH--------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 219 LLQELEVVREQLENLHKQHEESEVKSKTDV----KLLVKEV--------KSLRSSQSEVKQELSRLMKEKLEVEGVLQKE 286 (439)
Q Consensus 219 l~qEL~~~r~~le~L~k~~~ElEakskad~----KvLvKEV--------KsLR~sq~elkqEl~~~~~eK~elE~~L~~E 286 (439)
+.+|+..+++.|.-..+.++|.|+.-+.+- |+|. |- +-||++|.|=.-...-.+.-..-+|.=|.+|
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~-qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre 452 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLL-QYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRRE 452 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 778888888888888888888888665553 2221 22 2455555444434444444444455555555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 287 KQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 287 kq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
..++..+-.+..+++.+=.-=-..|.+||.-
T Consensus 453 ~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~R 483 (495)
T PF12004_consen 453 HAEMQAVLDHKQRIIDAQEKRIAALDAANSR 483 (495)
T ss_dssp -------------------------------
T ss_pred HHHHhcccccchHHHHHhhhhcccccccccc
Confidence 5554444444444444332222334444443
No 342
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=28.61 E-value=3.8e+02 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 231 ENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 231 e~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
.+|.++.+.+| +.+|.|-+..+.|+.+..++.+.+.+.+
T Consensus 70 ~~l~~r~e~ie----~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 70 QELKEKKETLE----LRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444443 3455666666666666666666655543
No 343
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.54 E-value=1.1e+03 Score=28.54 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=30.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHH-HHHHHHH-hhhhhhHHHHHHhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEV-AVRQFLT-TKVKDLEVELETTS 156 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~-AVk~fL~-tKVkDLEveLettk 156 (439)
++..+.+.-...+++.+.+|-..+..+-++|..+. ..+.|+. .-..+||..+..+.
T Consensus 58 ~~~~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~ 115 (1109)
T PRK10929 58 EERKGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVS 115 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHH
Confidence 55566666667777777777666666655555321 1122311 11466666665443
No 344
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.48 E-value=9.9e+02 Score=27.80 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=78.8
Q ss_pred HHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhh-----------hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhh
Q 039269 137 VRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKE-----------RFTQMQWDMEELRKQLLETELKLKYEQDERARA 205 (439)
Q Consensus 137 Vk~fL~tKVkDLEveLettkqk~ke~lqQAvl~ERE-----------r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~ 205 (439)
.+-.|.+.-+.++.-++-|-+. ..||-|+-+ .+ -|-..|-.|.|++--+++-+
T Consensus 394 ~~r~i~~~~~~~~~~~~~s~~~--r~L~~~~~~-~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~d------------- 457 (852)
T KOG4787|consen 394 MSKMIVTISELERKNLELTTQV--KQLETKVTP-KPNFVVPSGTTTTELRKEQAQMNELKDTVFKSD------------- 457 (852)
T ss_pred HHHHHHHHHHHHHhcccHHHHH--HHHhhcccc-chhhcCCCcchHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence 3445555556666555544332 334444432 11 12345677777776665544
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHH
Q 039269 206 ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMK-------EKLE 278 (439)
Q Consensus 206 e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~-------eK~e 278 (439)
+.....|.+.|+++-++--.|+-++..++- |++|.++. .++++..++ =-.+
T Consensus 458 -------V~~~~sL~~~LeqAsK~CRIL~~RL~K~~R-------------~q~R~~~~--~~~d~~kIK~LE~e~R~S~~ 515 (852)
T KOG4787|consen 458 -------VQKVISLATKLEQANKQCRILNERLNKLHR-------------KQVRDGEI--QYSDELKIKILELEKRLSEK 515 (852)
T ss_pred -------HHHHHHHHHHHHHHhchhHHHHHHHhHHHH-------------HHHhhhhh--ccchHHHHHHHHHHHHHHHH
Confidence 455667889999999998888887765543 77787653 233332222 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 279 VEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 279 lE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
+-.=|+.|- |-....+.++-.+|.+|+.++-+
T Consensus 516 Ls~~L~~El---E~~~~~~~~~e~~~evL~~~~~~ 547 (852)
T KOG4787|consen 516 LAIDLVSEL---EGKIPTIDEIEQCCEVLAAVETQ 547 (852)
T ss_pred HHHHHHHHH---HhhcCcHhHHHHHHHHHHHHhhh
Confidence 333344443 23345677888899999988755
No 345
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.43 E-value=3.7e+02 Score=22.82 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
....+..+++-++.+..-.....+-...-.+--++++-|..++..|++....+...+.+|..=..=|++++
T Consensus 48 ~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL~~v~ 118 (126)
T PF13863_consen 48 VIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFLEKVV 118 (126)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445555554444333222222222222223345555666666666666666666666655444444443
No 346
>PRK04406 hypothetical protein; Provisional
Probab=28.37 E-value=3.5e+02 Score=22.48 Aligned_cols=46 Identities=26% Similarity=0.253 Sum_probs=38.1
Q ss_pred hhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 039269 345 NRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCAL 411 (439)
Q Consensus 345 nRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al 411 (439)
.||.-| |.++-++++ +=++|.++++.---+-.+|++++--+....-
T Consensus 11 ~Ri~~L--E~~lAfQE~-------------------tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDL--ECQLAFQEQ-------------------TIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677766 888888888 7789999999999888999999888766553
No 347
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=27.82 E-value=7.2e+02 Score=26.00 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=9.0
Q ss_pred chhhHHHhhhhc
Q 039269 427 PLRKTVLSRFLD 438 (439)
Q Consensus 427 ~~~~t~ls~~l~ 438 (439)
..++|+|+|||+
T Consensus 440 ~~~rt~l~yll~ 451 (457)
T TIGR01000 440 TGKKTYFNYYKD 451 (457)
T ss_pred EcceeHHHHHHH
Confidence 457888888875
No 348
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=27.80 E-value=2.3e+02 Score=29.12 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=4.5
Q ss_pred ecCCCCcchh
Q 039269 328 VDTSSPSDAV 337 (439)
Q Consensus 328 vd~Ss~sDAl 337 (439)
+++|+++-+.
T Consensus 237 ~~as~~s~~~ 246 (292)
T KOG4005|consen 237 AGASSPSAAQ 246 (292)
T ss_pred CCCCChhhhh
Confidence 4455444333
No 349
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.68 E-value=3.8e+02 Score=22.67 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=7.2
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl 269 (439)
|-+.++.|.....+++.++
T Consensus 82 l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 82 LERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 350
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.68 E-value=3.6e+02 Score=22.50 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=4.2
Q ss_pred hHHHHHHHHHh
Q 039269 249 KLLVKEVKSLR 259 (439)
Q Consensus 249 KvLvKEVKsLR 259 (439)
+.+.|+|..+.
T Consensus 53 N~~sk~I~~~~ 63 (108)
T PF02403_consen 53 NELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHC
T ss_pred hHHHHHHHHHh
Confidence 33334443333
No 351
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.52 E-value=3.7e+02 Score=22.56 Aligned_cols=93 Identities=29% Similarity=0.411 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------------------
Q 039269 182 EELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE-------------------- 241 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE-------------------- 241 (439)
++|..+++.++..+...+.. .........|+..+++.++.|.....+.+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~-----------~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~ 70 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQ-----------LQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDK 70 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCE
Confidence 45666667777766666332 44555666667777777777764333322
Q ss_pred ------------hccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 242 ------------VKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 242 ------------akskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
.....=++.|-+-+..|..+...|.+++...-++..+++..+++
T Consensus 71 v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 71 VLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112246777777788888888888887777777777776654
No 352
>PRK00846 hypothetical protein; Provisional
Probab=27.47 E-value=3.6e+02 Score=22.87 Aligned_cols=65 Identities=23% Similarity=0.192 Sum_probs=0.0
Q ss_pred chhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCccCCCCCC
Q 039269 344 DNRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCALNTYVKSDNDDGK 423 (439)
Q Consensus 344 DnRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al~~~~~s~~~~~~ 423 (439)
+.||.-| |+.+.++++ +=++|.+.++.--....+|+.++-.+..+.-......-....+
T Consensus 12 e~Ri~~L--E~rlAfQe~-------------------tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s~~~~~~d 70 (77)
T PRK00846 12 EARLVEL--ETRLSFQEQ-------------------ALTELSEALADARLTGARNAELIRHLLEDLGKVRSTLFADPAD 70 (77)
T ss_pred HHHHHHH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q ss_pred CCCchh
Q 039269 424 EETPLR 429 (439)
Q Consensus 424 ~~~~~~ 429 (439)
+..|||
T Consensus 71 E~PPPH 76 (77)
T PRK00846 71 EPPPPH 76 (77)
T ss_pred CCCcCC
No 353
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=27.38 E-value=3.6e+02 Score=26.52 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 214 QENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
.-...+...|+.+++||.-|..++
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~L 183 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESHL 183 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666555443
No 354
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=27.24 E-value=6.3e+02 Score=25.08 Aligned_cols=30 Identities=7% Similarity=0.231 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEV 135 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~ 135 (439)
.+.+...++..+..-...=+.-....++.+
T Consensus 98 ~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~ 127 (297)
T PF02841_consen 98 QKKLMEQIEKKFEEFCKQNEEASEKKCQAL 127 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666655555555544444443
No 355
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=27.16 E-value=6.3e+02 Score=25.10 Aligned_cols=19 Identities=16% Similarity=0.076 Sum_probs=12.0
Q ss_pred hHHHHHHHHhhhhcccccc
Q 039269 302 HECEILRNRLQECSVNFLS 320 (439)
Q Consensus 302 hEc~iLr~RLQECn~~~l~ 320 (439)
.+....+.+|..|.+.=|+
T Consensus 197 a~l~~a~~~l~~~~I~AP~ 215 (346)
T PRK10476 197 AALAIAELHLEDTTVRAPF 215 (346)
T ss_pred HHHHHHHHHhhcCEEECCC
Confidence 4445566778888766553
No 356
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=27.07 E-value=1.6e+02 Score=29.58 Aligned_cols=120 Identities=20% Similarity=0.331 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLK 299 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~K 299 (439)
.+=+..++++++.+.++.++.+.+...+..-|-.+++.|...+.++ .+.-++-..|.++|..=|.|=.-.....+.
T Consensus 5 ~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~ 80 (304)
T PF02646_consen 5 EQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNWGEMQLER 80 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3445566888888889999888888888888888888888777222 344445556677777555444455555555
Q ss_pred HHhHHHHHHH-------Hh--------hhhcccccccccccceecCCCCcchhhhhhccch
Q 039269 300 LLHECEILRN-------RL--------QECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDN 345 (439)
Q Consensus 300 llhEc~iLr~-------RL--------QECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDn 345 (439)
+|..+..-.. .+ =+|-+.+| .+..++||+--|-+|..-+.-.++
T Consensus 81 iLe~~gl~~~~~y~~Q~~~~~~~~~~rpD~vI~LP--~~~~i~IDSK~pl~~y~~~~~a~~ 139 (304)
T PF02646_consen 81 ILEDSGLPEGCDYETQVSLDEDGNGLRPDFVIHLP--GGRHIPIDSKFPLEAYERYIEAED 139 (304)
T ss_pred HHHHcCCCcccchhhcccccCCCCCcCceEEEEcC--CCCEEEEecCCCHHHHHHHHhCCC
Confidence 5555432111 01 12333444 444677888777666544433333
No 357
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=27.02 E-value=3.2e+02 Score=21.57 Aligned_cols=58 Identities=34% Similarity=0.459 Sum_probs=29.1
Q ss_pred HhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHH
Q 039269 169 NEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQ----ENEMLLQELEVVREQLENL 233 (439)
Q Consensus 169 ~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~----e~~~l~qEL~~~r~~le~L 233 (439)
.|++|++. +++.+......++.+|... ...+-.-..++. ....+..++..+++.++.|
T Consensus 4 ~E~~rL~K---el~kl~~~i~~~~~kL~n~----~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 4 AEIERLEK---ELEKLEKEIERLEKKLSNE----NFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHCST----THHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHcCc----cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35666555 5666666777777666654 233333333333 3344444444444444443
No 358
>PRK00736 hypothetical protein; Provisional
Probab=26.89 E-value=3.4e+02 Score=21.96 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=0.0
Q ss_pred hccchhHHHHHHHHhhhhhhhhhhhcccccccCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCccCCC
Q 039269 341 TTSDNRIGLLVAETQLLAQDIERSMTGLDKTCNANGSDRRSDDELRQMLTDIFIDNARLRMQVNTVIRCALNTYVKSDND 420 (439)
Q Consensus 341 aTSDnRI~lLlAEaQlL~~d~E~~~~~~~~~~~s~~~~~~tddElRKmLaDlfiDNA~LRkqvNSv~R~Al~~~~~s~~~ 420 (439)
.+.++||.-| |..+-++++ +=++|.+.++.---+-..|.+++--+....-...... ..
T Consensus 1 ~~~e~Ri~~L--E~klafqe~-------------------tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~~-~~ 58 (68)
T PRK00736 1 MDAEERLTEL--EIRVAEQEK-------------------TIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQA-AP 58 (68)
T ss_pred CCHHHHHHHH--HHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CC
Q ss_pred CCCCCCchh
Q 039269 421 DGKEETPLR 429 (439)
Q Consensus 421 ~~~~~~~~~ 429 (439)
...++.|||
T Consensus 59 ~~~~~~PPH 67 (68)
T PRK00736 59 DVPVTKPPH 67 (68)
T ss_pred CCCCCCcCC
No 359
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=26.88 E-value=2.5e+02 Score=30.80 Aligned_cols=66 Identities=24% Similarity=0.272 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHH----HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 217 EMLLQELEVVREQLENLHKQHEESEVKSKTDVKLL----VKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvL----vKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
..++++++.+.+.++.|.++..++|++-- +--+- .+.+..|-....++++++++++.+|.+++..|
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLG-DSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777652 22111 22567777788889999999999999998644
No 360
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=26.78 E-value=1.1e+03 Score=27.67 Aligned_cols=190 Identities=25% Similarity=0.256 Sum_probs=94.9
Q ss_pred HHHHHHHhhhchHHHHHHhhHHHHH-----------HHHHHhhhh-----------------hhHHHHHHhhH-------
Q 039269 113 MQQRLTAAKADTEDLLARLNQEVAV-----------RQFLTTKVK-----------------DLEVELETTSE------- 157 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~AV-----------k~fL~tKVk-----------------DLEveLettkq------- 157 (439)
.+.-|..--+++|.-.+||++=.-. ++.++.|+- ||..||.-.+.
T Consensus 413 ~q~~L~s~ma~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~a 492 (739)
T PF07111_consen 413 SQQWLESQMAKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDA 492 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 3344444445588888888773322 344445543 77777765542
Q ss_pred ---hhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 158 ---NCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 158 ---k~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
-+..-+||-|=.=||.+.- +...|..+.+.+|..|...++.-...+.....+.........+-..+|.+|..-+
T Consensus 493 eLqlSa~liqqeV~~ArEqgea---E~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ 569 (739)
T PF07111_consen 493 ELQLSARLIQQEVGRAREQGEA---ERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQ 569 (739)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 2223344444444443321 3333666666677777666666666655555554444443333333333333333
Q ss_pred hhhh-hhhhccccchhHHHHHHHH-HhhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-HHHHHhHH
Q 039269 235 KQHE-ESEVKSKTDVKLLVKEVKS-LRSSQSEVKQELSRLMKEKL-------EVEGVLQKEKQRMEHADIA-NLKLLHEC 304 (439)
Q Consensus 235 k~~~-ElEakskad~KvLvKEVKs-LR~sq~elkqEl~~~~~eK~-------elE~~L~~Ekq~~e~~~~a-r~KllhEc 304 (439)
..|+ .+. .-|.||-+ ||-...++.+.|+.+-.|.+ ++++-..+||+|....... ..-...|.
T Consensus 570 ~~y~~alq--------ekvsevEsrl~E~L~~~E~rLNeARREHtKaVVsLRQ~qrqa~reKer~~E~~~lq~e~~~~e~ 641 (739)
T PF07111_consen 570 EVYERALQ--------EKVSEVESRLREQLSEMEKRLNEARREHTKAVVSLRQIQRQAAREKERNQELRRLQEEARKEEG 641 (739)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHH
Confidence 3332 111 11223322 55555566666665544433 4455555565554332222 22334567
Q ss_pred HHHHHHhhh
Q 039269 305 EILRNRLQE 313 (439)
Q Consensus 305 ~iLr~RLQE 313 (439)
.-|..||||
T Consensus 642 ~rl~~rlqe 650 (739)
T PF07111_consen 642 QRLTQRLQE 650 (739)
T ss_pred HHHHHHHHH
Confidence 778888886
No 361
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.50 E-value=4.3e+02 Score=22.91 Aligned_cols=62 Identities=23% Similarity=0.295 Sum_probs=30.4
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 039269 247 DVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 247 d~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RL 311 (439)
+.+-|.+||+-||.+-- =--++.+|--|-..+-.=+.+=+ .=...-+|.-++.+++.|+++|
T Consensus 25 e~~~L~eEI~~Lr~qve-~nPevtr~A~EN~rL~ee~rrl~--~f~~~gerE~l~~eis~L~~~l 86 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVE-HNPEVTRFAMENIRLREELRRLQ--SFYVEGEREMLLQEISELRDQL 86 (86)
T ss_pred HHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHhhC
Confidence 34778888888886431 11222222222211111111101 1113346778888999998864
No 362
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.34 E-value=1.8e+02 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYE 198 (439)
Q Consensus 184 lr~k~~e~E~~Lks~ 198 (439)
||+.+..+|.+|...
T Consensus 17 cr~~le~ve~rL~~~ 31 (85)
T PF15188_consen 17 CRRRLEAVESRLRRR 31 (85)
T ss_pred HHHHHHHHHHHHccc
Confidence 888888899888876
No 363
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=26.18 E-value=4.9e+02 Score=23.47 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhHhhHH
Q 039269 135 VAVRQFLTTKVKDLEVELETTSENCKE 161 (439)
Q Consensus 135 ~AVk~fL~tKVkDLEveLettkqk~ke 161 (439)
+.+=++|..-++.+|.|+.+.+.....
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~ 41 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELAR 41 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577888899999999988876644
No 364
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.16 E-value=2.7e+02 Score=21.52 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039269 213 IQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k 235 (439)
..+|..|..++..+++++..|..
T Consensus 39 ~~en~~L~~~~~~L~~~~~~L~~ 61 (64)
T PF00170_consen 39 ESENEELKKELEQLKKEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666666554
No 365
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=25.92 E-value=8.6e+02 Score=26.25 Aligned_cols=55 Identities=25% Similarity=0.412 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
...+|.+.+.+|+..++.|++.|.-+..+.|++.. .++.++|....++..-....
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~-------~~~~~~~~~~~~~~~~~~~~ 332 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE-------GEQESFREQPQELSQQLEPE 332 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555444 44555555444444444333
No 366
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=25.91 E-value=6.1e+02 Score=24.48 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=13.3
Q ss_pred HHHhhhhhhHHHHHHhhHhhHHHHH
Q 039269 140 FLTTKVKDLEVELETTSENCKENMQ 164 (439)
Q Consensus 140 fL~tKVkDLEveLettkqk~ke~lq 164 (439)
.|..++..++..|+.-...-++..+
T Consensus 9 ~i~e~~~~f~~~le~e~~~Rr~~ee 33 (247)
T PF06705_consen 9 SINERFSGFESDLENEKRQRREQEE 33 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3555666666666555444444433
No 367
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=25.81 E-value=6.4e+02 Score=24.73 Aligned_cols=52 Identities=31% Similarity=0.386 Sum_probs=33.0
Q ss_pred HHHhhhhhhhhcc-ccchhHHHHHHHHHhhh------------hHHHHHHHHHHHHHHHHHHHHH
Q 039269 232 NLHKQHEESEVKS-KTDVKLLVKEVKSLRSS------------QSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 232 ~L~k~~~ElEaks-kad~KvLvKEVKsLR~s------------q~elkqEl~~~~~eK~elE~~L 283 (439)
.-.++|-.+|-+| +.++.+|--++.+|++. +..|+-||+...+++...|.=|
T Consensus 97 ~sf~~Y~~leL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 97 DSFNQYKNLELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888766 56777777777777642 3455666666666665554433
No 368
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=25.68 E-value=6.8e+02 Score=26.97 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=34.5
Q ss_pred HHH-HHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhh
Q 039269 184 LRK-QLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 184 lr~-k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq 262 (439)
++- |..|+|.+.|---=..+...- |+..|.=|.|.++++|+.+-.++. -|.-+-.-+.|||+.+..-+
T Consensus 116 ~~Dskv~EveekykkaMvsnaQLDN-------EKsnl~YqVDtLKD~LeE~eeqLa----eS~Re~eek~kE~er~Kh~~ 184 (405)
T KOG2010|consen 116 LRDSKVSEVEEKYKKAMVSNAQLDN-------EKNNLIYQVDTLKDVLEEQEEQLA----ESYRENEEKSKELERQKHMC 184 (405)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhcc-------cccceeeeHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 444 556777776655333333333 444455555555555554433332 23334444667777665544
No 369
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=25.46 E-value=6.1e+02 Score=24.36 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=7.8
Q ss_pred HHHHHHhhhhccccc
Q 039269 305 EILRNRLQECSVNFL 319 (439)
Q Consensus 305 ~iLr~RLQECn~~~l 319 (439)
.-|-..|++++..|.
T Consensus 217 ~~ll~~i~~~~~~~~ 231 (296)
T PF13949_consen 217 EELLQEIQEANEEFA 231 (296)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555554
No 370
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=25.36 E-value=7.3e+02 Score=25.20 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhh------HHHHHHhhHhhHHHHHHHHH
Q 039269 104 LKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDL------EVELETTSENCKENMQQAVL 168 (439)
Q Consensus 104 ~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDL------EveLettkqk~ke~lqQAvl 168 (439)
..+.+.|..+..-....++-.+..-..|+.|...-+-+-.|...- =.+|-.--.+.++.++||.-
T Consensus 75 ~~l~~~~~~L~~l~~~~~~~L~e~~~~L~~E~~ed~~~R~k~G~~~~S~~~~~~l~~~~~k~~~~L~~A~~ 145 (337)
T cd09234 75 KNLVEAMGELSDVYQDVEAMLNEIESLLEEEELQEKEFQEAVGKRGSSIAHVTELKRELKKYKEAHEKASQ 145 (337)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666667778888888777776666431 11222233445556666643
No 371
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.35 E-value=4.6e+02 Score=28.96 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
..+|+.|++|-+.+|+.-.+..++.
T Consensus 79 ~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 79 ISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5566666666665555555554443
No 372
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=25.34 E-value=2e+02 Score=26.45 Aligned_cols=74 Identities=26% Similarity=0.341 Sum_probs=59.3
Q ss_pred HHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHhhhhhh
Q 039269 162 NMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVV-REQLENLHKQHEES 240 (439)
Q Consensus 162 ~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~-r~~le~L~k~~~El 240 (439)
.+-.+|.....+... ++.-+..++..+++. ..++.|.+.+-.||+.- +++++.|.+.+.+-
T Consensus 17 eLlk~v~~~~~k~~~-------fk~~l~~L~sTl~~i-----------~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g 78 (147)
T PF05659_consen 17 ELLKAVIDASKKSLS-------FKSILKRLESTLESI-----------IPIIKEIDKLNVELDRPRQEEIERLKELLEKG 78 (147)
T ss_pred HHHHHHHHHHHHHHh-------hhhHHHHHHHHHHHh-----------hhHHHHHHHHhhhcCCchhHHHHHHHHHHHHH
Confidence 455677777888887 888888888888877 77899999999999999 99999999888753
Q ss_pred hhccccchhHHHHHHHHHhhh
Q 039269 241 EVKSKTDVKLLVKEVKSLRSS 261 (439)
Q Consensus 241 Eakskad~KvLvKEVKsLR~s 261 (439)
+.||..+..+|.-
T Consensus 79 --------~~LV~k~sk~~r~ 91 (147)
T PF05659_consen 79 --------KELVEKCSKVRRW 91 (147)
T ss_pred --------HHHHHHhccccHH
Confidence 5677777766643
No 373
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=25.18 E-value=1.3e+03 Score=27.94 Aligned_cols=85 Identities=19% Similarity=0.187 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHhhhhhhhhccccchhHHHHHHH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEV-------VREQLENLHKQHEESEVKSKTDVKLLVKEVK 256 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~-------~r~~le~L~k~~~ElEakskad~KvLvKEVK 256 (439)
|+..+.+++.-|--..+++...-+...++..+.+.|..-+.- +..++..+-+-|+++=...-+-.+-...|.+
T Consensus 845 l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~e 924 (1259)
T KOG0163|consen 845 LLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELE 924 (1259)
T ss_pred HHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 555556666555555555555555566666666655444331 1222222222222221111112333455666
Q ss_pred HHhhhhHHHHHH
Q 039269 257 SLRSSQSEVKQE 268 (439)
Q Consensus 257 sLR~sq~elkqE 268 (439)
-||..|..+..|
T Consensus 925 r~rk~qE~~E~E 936 (1259)
T KOG0163|consen 925 RLRKIQELAEAE 936 (1259)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
No 374
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=25.09 E-value=9.6e+02 Score=27.72 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhcc---ccchhHHHHHHHHHhhh
Q 039269 223 LEVVREQLENLHKQHEESEVKS---KTDVKLLVKEVKSLRSS 261 (439)
Q Consensus 223 L~~~r~~le~L~k~~~ElEaks---kad~KvLvKEVKsLR~s 261 (439)
.+.++++++.|++++.+++.=- ..-.+++.+|.+.++..
T Consensus 429 ~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkk 470 (800)
T TIGR01063 429 REKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQ 470 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443322 22235666666655543
No 375
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=25.08 E-value=1.9e+02 Score=31.72 Aligned_cols=166 Identities=24% Similarity=0.292 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHH-HHH-------hhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhh
Q 039269 103 RLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQ-FLT-------TKVKDLEVELETTSENCKENMQQAVLNEKERF 174 (439)
Q Consensus 103 R~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~-fL~-------tKVkDLEveLettkqk~ke~lqQAvl~EREr~ 174 (439)
+.+|...-...+.++..-.+.+..|..||.--..-++ |+. .-+.-|+.||+-...--+++|..-|..=|..|
T Consensus 216 ~~~L~~~k~~r~~~~~~l~~~i~~LW~~L~~~~ee~~~F~~~~~~ls~~~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei 295 (619)
T PF03999_consen 216 LQELEEEKEEREEKLQELREKIEELWNRLDVPEEEREAFLEENSGLSLDTIEALEEELERLEELKKQNLKEFIEKKRQEI 295 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444444455556666777777888888875544444 543 45778999999999999999999888877776
Q ss_pred hhhhccHHHHHHHHHHHHHhhh----hHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHhhhhhhhhcc
Q 039269 175 TQMQWDMEELRKQLLETELKLK----YEQDERARAESSKMSIIQENEMLLQELEVVRE------QLENLHKQHEESEVKS 244 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lk----s~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~------~le~L~k~~~ElEaks 244 (439)
-. |..+|+=.+..-+ .+.|. ..|.-++....|...|.++.+.-+. +.+.|-++..+||+++
T Consensus 296 ~e-------lWd~~~~s~eer~~F~~~~~d~--~~E~lL~~hE~Ei~~Lk~~~~~~k~Il~~v~k~~~l~~~~~~Le~~~ 366 (619)
T PF03999_consen 296 EE-------LWDKCHYSEEERQAFTPFYIDS--YTEELLELHEEEIERLKEEYESRKPILELVEKWESLWEEMEELEESS 366 (619)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-------HHHHhCCCHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 3334432221111 12222 2255556666666677766666654 3445667888888888
Q ss_pred ccchhHH------H---HHHHHHhhhhHHHHHHHHHHHHHHH
Q 039269 245 KTDVKLL------V---KEVKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 245 kad~KvL------v---KEVKsLR~sq~elkqEl~~~~~eK~ 277 (439)
+-.-.++ . |+=|.+-+....|.++|...+.+|.
T Consensus 367 ~D~~Rl~~RGg~LLkEEk~rk~i~k~lPkle~~L~~~l~~wE 408 (619)
T PF03999_consen 367 KDPSRLNNRGGHLLKEEKERKRIQKKLPKLEEELKKKLEEWE 408 (619)
T ss_dssp H-CCGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5433322 2 3334455555555566655555554
No 376
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.00 E-value=5.8e+02 Score=23.96 Aligned_cols=136 Identities=26% Similarity=0.375 Sum_probs=62.4
Q ss_pred hchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhh
Q 039269 122 ADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDE 201 (439)
Q Consensus 122 TDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qde 201 (439)
++.|-||.+--.+ +|++-.--=|+=|| .||..-..+.+- .=+++.|+.....++.....+...
T Consensus 10 ~EfE~lId~~G~e-~v~~LmP~VV~vLE-~Le~~~~~n~~~---------------~~e~~~L~~d~e~L~~q~~~ek~~ 72 (158)
T PF09744_consen 10 KEFERLIDRYGEE-AVKGLMPKVVRVLE-LLESLASRNQEH---------------EVELELLREDNEQLETQYEREKEL 72 (158)
T ss_pred HHHHHHHHHhChh-HHHHHHHHHHHHHH-HHHHHHHhhhhh---------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677665444 77775555555555 355444333211 011222333333333333333222
Q ss_pred hHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 202 RARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 202 k~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~ 281 (439)
+...+.... .--+.+.+|-..++.+++.|+.+-..|+.+.+. +.--+..|-....+|+.+++.....-+++=+
T Consensus 73 r~~~e~~l~---~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~----~~~q~~rlee~e~~l~~e~~~l~er~~e~l~ 145 (158)
T PF09744_consen 73 RKQAEEELL---ELEDQWRQERKDLQSQVEQLEEENRQLELKLKN----LSDQSSRLEEREAELKKEYNRLHERERELLR 145 (158)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 322322221 112445555555555566665555555544332 2223345666666666666666655544433
No 377
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=24.78 E-value=3.9e+02 Score=22.18 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
|.=++.-+|..|+. ........+..+|-.|.-++..++..+..+++...++
T Consensus 19 LKLrI~fLee~l~~------~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 19 LKLRIYFLEERLQK------LGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHh------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555542 1233444555555555555555555555555544443
No 378
>KOG3215 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=6.5e+02 Score=25.37 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039269 263 SEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 263 ~elkqEl~~~~~eK~elE~~L 283 (439)
-+|++++.+......-+++.|
T Consensus 153 ~el~keleel~~~~~s~~~kl 173 (222)
T KOG3215|consen 153 NELKKELEELDDLNNSTETKL 173 (222)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 355666666555555555544
No 379
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=24.27 E-value=2.4e+02 Score=25.49 Aligned_cols=56 Identities=27% Similarity=0.469 Sum_probs=46.0
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 170 EKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 170 EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
||+| .+|++|- .||-.++-..++++-..+..+.....-..||...|.+-|..+..+
T Consensus 17 ErdR---~~WeiER-----aEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 17 ERDR---NQWEIER-----AEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHH---HHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4555 4688873 578888888899999999999999999999999998888887664
No 380
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.03 E-value=5.6e+02 Score=23.42 Aligned_cols=90 Identities=22% Similarity=0.279 Sum_probs=42.0
Q ss_pred ccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHH------HHHHH--HhhhhhhhhccccchhH
Q 039269 179 WDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVRE------QLENL--HKQHEESEVKSKTDVKL 250 (439)
Q Consensus 179 WdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~------~le~L--~k~~~ElEakskad~Kv 250 (439)
-.|..+=.+++.+...|...--.+...+. -..|++..++||+.+-+ .+=++ ...++++-..-+-.+-.
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~----qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~ 81 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEA----QLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET 81 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence 34555556666666666555222222221 23344445555543311 11111 12333333333344455
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~ 272 (439)
|-..|++|+++...+..++...
T Consensus 82 Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 82 LELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666655543
No 381
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=23.88 E-value=3.7e+02 Score=21.32 Aligned_cols=89 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccch-hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDV-KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRM 290 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~-KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~ 290 (439)
+..+.....+++...+.++..|...+.++..+..... .+=+-++...+.-...|.....+.-.+...++..+..-++.-
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 039269 291 EHADIANLKL 300 (439)
Q Consensus 291 e~~~~ar~Kl 300 (439)
..+..-++++
T Consensus 83 ~~a~~~~k~~ 92 (123)
T PF02050_consen 83 QEARRERKKL 92 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 382
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=23.86 E-value=7.1e+02 Score=24.56 Aligned_cols=118 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHH
Q 039269 107 NRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRK 186 (439)
Q Consensus 107 nRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~ 186 (439)
.|+...|+++|...+.-...+..||....... ...++...+..|+..+++-+..+++.+-..+.++..++ -|-
T Consensus 157 ~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~--p~~~l~~~~~~Ld~l~~rL~~~~~~~l~~~~~~L~~l~-----~~l 229 (319)
T PF02601_consen 157 QRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRL--PERKLEQQQQRLDELKQRLKQAIQQKLQRKRQRLQNLS-----NRL 229 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhh
Q ss_pred HHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 187 QLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 187 k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
+...-...++... .....-............+.|....+.|+.|+
T Consensus 230 ~~~~~~~~l~~~~---~~~~~l~~~~~~~l~~~~~~l~~~~~~L~~ls 274 (319)
T PF02601_consen 230 KRQSPQQKLNQQR---QQLQRLQKRLQRKLSQKRQRLERLEARLEALS 274 (319)
T ss_pred hhhhhhhHHHHHH---HHhhhhhHHHhhhhHHHHHHHHHHHHHHHcCC
No 383
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=23.76 E-value=8.6e+02 Score=25.47 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=10.0
Q ss_pred hHHHHHHHHhhhhccccc
Q 039269 302 HECEILRNRLQECSVNFL 319 (439)
Q Consensus 302 hEc~iLr~RLQECn~~~l 319 (439)
......+.+|..|.+.=|
T Consensus 305 ~~l~~a~~~l~~~~I~AP 322 (457)
T TIGR01000 305 SKIKSLKEDSQKGVIKAP 322 (457)
T ss_pred HHHHHHHHHHhCCEEECC
Confidence 344455556666665545
No 384
>PRK04406 hypothetical protein; Provisional
Probab=23.56 E-value=4.1e+02 Score=22.03 Aligned_cols=39 Identities=5% Similarity=0.004 Sum_probs=23.1
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 204 RAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 204 ~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
+.+-+..+.....-...++++.++.++..|.++..++++
T Consensus 22 fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~ 60 (75)
T PRK04406 22 FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMDS 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444444444445556677777777777777766654
No 385
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=23.54 E-value=4.5e+02 Score=22.18 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
++|++++++-+-.+......+.++|+
T Consensus 38 i~Em~~ir~~v~eLE~~h~kmK~~YE 63 (79)
T PF08581_consen 38 IQEMQQIRQKVYELEQAHRKMKQQYE 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666555555555555555554
No 386
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=23.45 E-value=7.5e+02 Score=25.07 Aligned_cols=127 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 039269 216 NEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKL--EVEGVLQKEKQRMEHA 293 (439)
Q Consensus 216 ~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~--elE~~L~~Ekq~~e~~ 293 (439)
-..++.+.+++-+... ++-++|+++--.....|.++...+|.+-.+.-+.++..+...+ +++++=..=+
T Consensus 71 W~~il~QTE~isk~~~---~~Aeeln~~~~~kLs~L~~~k~~~rK~~~~~~q~i~~e~~~~t~~eveK~Kk~Y~------ 141 (237)
T cd07685 71 WAVLVSQTETLSQVLR---KHAEDLNAGPLSKLSLLIRDKQQLRKTFSEQWQLLKQEYTKTTQQDIEKLKSQYR------ 141 (237)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 3444455555544433 3445677777778888999999988877777777777776544 4555444444
Q ss_pred HHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHHHHHHHhhhhhhhh
Q 039269 294 DIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGLLVAETQLLAQDIE 362 (439)
Q Consensus 294 ~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~lLlAEaQlL~~d~E 362 (439)
++.......|.+.++-+-+ .+.+++.- --.+|..-|-..=|.-=|.|-+|+.+-+...
T Consensus 142 -----~~c~~~e~AR~K~ekas~~---K~~~K~~E---Ky~~m~~KL~~~hN~YlL~I~~An~~kdkyy 199 (237)
T cd07685 142 -----SLAKDSAQAKRKYQEASKD---KDRDKAKE---KYVKSLWKLYALHNEYVLAVRAAQLHHQHHY 199 (237)
T ss_pred -----HHHHHHHHHHHHHHhcccc---hhHHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444444444553211 11121100 0135555566666777777888888765553
No 387
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=23.33 E-value=4.5e+02 Score=22.19 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=26.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
++-|.=.||.+....+|||++++=+.--.-+++
T Consensus 20 ~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RVi 52 (70)
T PF08606_consen 20 LMLENFTLRKQLDQTRQELSHALYQHDAACRVI 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 567888899999999999999887766655554
No 388
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.31 E-value=1e+03 Score=26.27 Aligned_cols=121 Identities=21% Similarity=0.151 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 214 QENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLV-KEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEH 292 (439)
Q Consensus 214 ~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLv-KEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~ 292 (439)
+....+..+|++--++.+-+..|..-++|.++|=++.+. +|+ -...||+|..+..++....+..-..=-.....
T Consensus 13 qr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~-----~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~ 87 (459)
T KOG0288|consen 13 QRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKEL-----ELNRLQEENTQLNEERVREEATEKTLTVDVLI 87 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666666666666544432 332 34456666666655554422111111111122
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhh-hhhccchhHHHHHHHHhhh
Q 039269 293 ADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVD-LLTTSDNRIGLLVAETQLL 357 (439)
Q Consensus 293 ~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAld-LLaTSDnRI~lLlAEaQlL 357 (439)
+.+-|-.++.|++-|+.| .+.|. ...+|+. ++. --||..-||+|--.
T Consensus 88 ~en~~~r~~~eir~~~~q----~~e~~------------n~~~~l~~~~~--~~r~~e~la~~~~~ 135 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQ----KAEFE------------NAELALREMRR--KMRIAERLAEALKD 135 (459)
T ss_pred HHHHHHHHHHHHHHHHHh----hhhhc------------cchhhHHHHHH--HHHHHHHHHHHhhh
Confidence 445566677777776655 44554 2222321 111 25788888886443
No 389
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.21 E-value=3.9e+02 Score=21.45 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=18.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 206 ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 206 e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
+-+.+......-...++++.++.++..|.++..++++
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444445556677777777777777766653
No 390
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=23.13 E-value=9.1e+02 Score=25.57 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhh
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLN 132 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLn 132 (439)
|+..+|+++|...+.-.+.|..||.
T Consensus 270 RL~~am~~~L~~~r~rL~~L~~RL~ 294 (432)
T TIGR00237 270 RLHRAFDTLLHQKKARLEQLVASLQ 294 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445566666666666666666654
No 391
>PF14282 FlxA: FlxA-like protein
Probab=23.07 E-value=3.7e+02 Score=23.27 Aligned_cols=65 Identities=18% Similarity=0.378 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHE-ESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEK 276 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~-ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK 276 (439)
+.......|.+.+..+++++..|..-.+ --|. .+..++.|-.++..|.++...+..+..+.-..+
T Consensus 16 ~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~-k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~ 81 (106)
T PF14282_consen 16 SSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQ-KQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQK 81 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3477778888888888888888877422 2222 256778888888888888888888776655444
No 392
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=23.04 E-value=1.1e+03 Score=26.48 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=89.1
Q ss_pred CCceeeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHH--HHHhhHhhHHHHHHHHHH
Q 039269 92 RNSLLALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVE--LETTSENCKENMQQAVLN 169 (439)
Q Consensus 92 ~d~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEve--Lettkqk~ke~lqQAvl~ 169 (439)
--++.+-|--+|.+..-+..--++-..- |-- |--|| -+||+.|.++|--||+= |-+..++-+. ..||+-.
T Consensus 153 ~~~~~~a~d~~~s~~~q~~d~~e~~~~k---dSQ-lkvrl---qe~~~ll~~Rve~le~~Sal~~lq~~L~l-a~~~~~~ 224 (554)
T KOG4677|consen 153 TPAKSYAPDLGRSKGEQYRDYSEDWSPK---DSQ-LKVRL---QEVRRLLKGRVESLERFSALRSLQDKLQL-AEEAVSM 224 (554)
T ss_pred cchhhcccccccchhhhHhhHhhhcccc---hhh-HHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3456677777888887554444332211 111 23344 36899999999999986 3333333332 3456666
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHH------HHHHHHHHHHHHhhhhhhhhc
Q 039269 170 EKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQE------LEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 170 EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qE------L~~~r~~le~L~k~~~ElEak 243 (439)
+.|..-+||- +.-+++...|+....+-.-...++.....-.-|.+.+.+. |+...+-++++++++.-+..+
T Consensus 225 ~~e~~i~~~~---~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~ 301 (554)
T KOG4677|consen 225 HDENVITAVL---IFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSP 301 (554)
T ss_pred hhhhHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCC
Confidence 6777777653 2344444444444433222222222222222333333333 334456666666666555433
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039269 244 SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVE 280 (439)
Q Consensus 244 skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE 280 (439)
-| .-.+-+||--+|--..=-+.++.+++-+-..|+
T Consensus 302 ~k--stas~~E~ee~rve~~~s~ed~~~~q~q~~~Lr 336 (554)
T KOG4677|consen 302 DK--STASRKEFEETRVELPFSAEDSAHIQDQYTLLR 336 (554)
T ss_pred Cc--chhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 33 345666766666544333333444443333333
No 393
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.98 E-value=5.5e+02 Score=27.38 Aligned_cols=15 Identities=47% Similarity=0.494 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYE 198 (439)
Q Consensus 184 lr~k~~e~E~~Lks~ 198 (439)
|+.++.+.+..+...
T Consensus 76 l~~~l~~l~~~~~~~ 90 (525)
T TIGR02231 76 LRKQIRELEAELRDL 90 (525)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566555555555444
No 394
>smart00150 SPEC Spectrin repeats.
Probab=22.76 E-value=3.5e+02 Score=20.54 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=28.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 039269 206 ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTD 247 (439)
Q Consensus 206 e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad 247 (439)
.+.......+.+.+..++...+..++.+.+....|-...-.+
T Consensus 30 ~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~ 71 (101)
T smart00150 30 LESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPD 71 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCc
Confidence 344555566777778888888888887777766666554333
No 395
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.75 E-value=3.2e+02 Score=28.60 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHhhhhcccccccc
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIA-------NLKLLHECEILRNRLQECSVNFLSEE 322 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~a-------r~KllhEc~iLr~RLQECn~~~l~ee 322 (439)
|..|-.+...||+|-.|--=+.--+|..|++.|++.+..++- +-.|+..|.-|-.+-|-|+-++-.++
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
No 396
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=22.66 E-value=8.9e+02 Score=25.26 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=43.1
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hccccchhHHHHH
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE--VKSKTDVKLLVKE 254 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE--akskad~KvLvKE 254 (439)
-+-+.+.+.+.+...|.+.++. .-...+=..+.+.+..++++++...+..+.-+ .-.+|+++-|.++
T Consensus 105 ~~~~~~~ler~i~~Le~~~~T~-----------~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~ 173 (294)
T COG1340 105 GGRSIKSLEREIERLEKKQQTS-----------VLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKK 173 (294)
T ss_pred cCCCHHHHHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666555443 11222233445555555555555544332211 0122444445555
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLE 278 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~e 278 (439)
-+.++.-..+|-++...|+.+-..
T Consensus 174 ~~e~~eki~~la~eaqe~he~m~k 197 (294)
T COG1340 174 AREIHEKIQELANEAQEYHEEMIK 197 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554443
No 397
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=22.61 E-value=4.8e+02 Score=22.16 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=40.6
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH
Q 039269 246 TDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIAN-LKLLHECEIL 307 (439)
Q Consensus 246 ad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar-~KllhEc~iL 307 (439)
..+...-..|.-++......++.+-+++.+..-+|++..+.+........-+ .|.|-|..+.
T Consensus 75 ~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lekL~ek~~~~~~~~~~r~EQk~lDE~a~~ 137 (141)
T TIGR02473 75 QRIQQQQQELALLQQEVEAKRERLLEARRELKALEKLKEKKQKEYRAEEAKREQKEMDELATQ 137 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555667777777778888888888898999988776654443333222 3566666543
No 398
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.56 E-value=8.9e+02 Score=25.21 Aligned_cols=56 Identities=14% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHH
Q 039269 107 NRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAV 167 (439)
Q Consensus 107 nRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAv 167 (439)
.|+...|+++|...+...+.|..||... ....++..+...|+...++-...+++-+
T Consensus 274 ~rL~~a~~~~L~~~~~~L~~L~~rL~~~-----~P~~~l~~~~q~L~~l~~rL~~a~~~~L 329 (438)
T PRK00286 274 QRLARAMRRRLEQKRQRLDQLARRLKFQ-----SPERLLAQQQQRLDRLQQRLQRALERRL 329 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888777777411 1223344444455554444444443333
No 399
>KOG4256 consensus Kinetochore component [Cell cycle control, cell division, chromosome partitioning]
Probab=22.46 E-value=5.8e+02 Score=31.72 Aligned_cols=135 Identities=24% Similarity=0.330 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHhhhhcccccccccccceecCCCCcchhh-
Q 039269 267 QELSRLMKEKLEV----EGVLQKEKQRMEHADIANLKLLHECEILR---NRLQECSVNFLSEEEDKLTVDTSSPSDAVD- 338 (439)
Q Consensus 267 qEl~~~~~eK~el----E~~L~~Ekq~~e~~~~ar~KllhEc~iLr---~RLQECn~~~l~ee~d~l~vd~Ss~sDAld- 338 (439)
.+++++.+...+. -++||+|-+.++..+--|.....|+..|- =|.|.+-..+ --|+|+-||+-
T Consensus 845 AaleeaVekhLamdhpkrkLLqeeielMelkk~kRg~gikelnllgkeifrrqdyIekl---------dtPdSleDaikt 915 (2209)
T KOG4256|consen 845 AALEEAVEKHLAMDHPKRKLLQEEIELMELKKCKRGEGIKELNLLGKEIFRRQDYIEKL---------DTPDSLEDAIKT 915 (2209)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHHhhchHHHHHHHHHHhc---------CCCchHHHHHHH
Confidence 5677888888887 78999999999999999999999998876 4445433222 13456777764
Q ss_pred ---hhhccchhHHHH----------------------HHHHhhhhhhhhh-hhcccccccCCCCCCCccHHHHHHHHHHH
Q 039269 339 ---LLTTSDNRIGLL----------------------VAETQLLAQDIER-SMTGLDKTCNANGSDRRSDDELRQMLTDI 392 (439)
Q Consensus 339 ---LLaTSDnRI~lL----------------------lAEaQlL~~d~E~-~~~~~~~~~~s~~~~~~tddElRKmLaDl 392 (439)
+++-+|+-|.-| +||||-.+.-.=- +..+.-.....+-.+..-+-+.-|.++|+
T Consensus 916 aqcafa~rddai~~ldiIdLiDlekaedcllllksLp~aeaek~AeriI~~ar~a~qeepdhnkedka~dmeraKTisdi 995 (2209)
T KOG4256|consen 916 AQCAFAHRDDAIRFLDIIDLIDLEKAEDCLLLLKSLPIAEAEKFAERIIHMARHADQEEPDHNKEDKAGDMERAKTISDI 995 (2209)
T ss_pred HHHHHHhccchhhhhHHHHHHHHHhhhhhhhccccCCHHHHHHHHHHHHHHHHhhccccCccccccccchhHHHHHHHHH
Confidence 566777765432 3555554422211 22222223333444555677999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCccCCCC
Q 039269 393 FIDNARLRMQVNTVIRCALNTYVKSDNDD 421 (439)
Q Consensus 393 fiDNA~LRkqvNSv~R~Al~~~~~s~~~~ 421 (439)
| +.|+|.-|....-++-+
T Consensus 996 f-----------kfic~ianakan~dkkd 1013 (2209)
T KOG4256|consen 996 F-----------KFICCIANAKANGDKKD 1013 (2209)
T ss_pred H-----------HHHHHHhcCcccccchH
Confidence 8 67888887665544444
No 400
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=22.40 E-value=1.7e+02 Score=32.21 Aligned_cols=57 Identities=26% Similarity=0.271 Sum_probs=42.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 206 ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 206 e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
.++..||-.=.-+++.|-|++ |||++ .||.+....+|||+++|=+.--.-+++.+
T Consensus 63 ~~satSIPalL~~lQdEWDav--ML~~F-----------------------~LRqqL~ttrQELShaLYqhDAAcrViaR 117 (506)
T KOG0289|consen 63 PPSATSIPALLKTLQDEWDAV--MLESF-----------------------TLRQQLQTTRQELSHALYQHDAACRVIAR 117 (506)
T ss_pred CCCccchHHHHHHHHHHHHHH--HHHhh-----------------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344556666666777777765 45554 58999999999999999998888887765
Q ss_pred HH
Q 039269 286 EK 287 (439)
Q Consensus 286 Ek 287 (439)
=.
T Consensus 118 L~ 119 (506)
T KOG0289|consen 118 LT 119 (506)
T ss_pred HH
Confidence 33
No 401
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.11 E-value=4.7e+02 Score=25.10 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=19.1
Q ss_pred hHHHHHHhhHHHHHHHHH-Hhhhh-hhHHHHHHhhHhhH
Q 039269 124 TEDLLARLNQEVAVRQFL-TTKVK-DLEVELETTSENCK 160 (439)
Q Consensus 124 mEDLiaRLnQE~AVk~fL-~tKVk-DLEveLettkqk~k 160 (439)
.|++--+||.--|.=.|= +..|+ .-+.+++--|+.-|
T Consensus 33 FeEvg~~L~RTsAACGFRWNs~VRkqY~~~i~~AKkqRk 71 (161)
T TIGR02894 33 FEEVGRALNRTAAACGFRWNAYVRKQYEEAIELAKKQRK 71 (161)
T ss_pred HHHHHHHHcccHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666653 23332 34555554444433
No 402
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=22.04 E-value=6.3e+02 Score=23.27 Aligned_cols=98 Identities=19% Similarity=0.330 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEH 292 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~ 292 (439)
..+++.++.+++.+..+|..|...|..++.|+.+ |... =++.+.++..++.+..
T Consensus 13 ~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~-----------l~~~-------ce~Ll~eq~~L~~~ae-------- 66 (157)
T PF04136_consen 13 REECDQLLDQTDEILDQLDELQEQYNSVSEKTNS-----------LHEA-------CEQLLEEQTRLEELAE-------- 66 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHH-------HHHHHHHHHHHHHHHH--------
Confidence 5688899999999999999999999999887642 2222 2444444444444322
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhhhhccchhHHH
Q 039269 293 ADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDLLTTSDNRIGL 349 (439)
Q Consensus 293 ~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldLLaTSDnRI~l 349 (439)
+-.++-+...+...+..+|.-.+. .|.+ .+=.++|..-|.=|.-
T Consensus 67 ~I~~~L~yF~~Ld~itr~Ln~p~~----------sV~~---~~F~~~L~~LD~cl~F 110 (157)
T PF04136_consen 67 EISEKLQYFEELDPITRRLNSPGS----------SVNS---DSFKPMLSRLDECLEF 110 (157)
T ss_pred HHHHHhHHHhhHHHHHHHHcCCCC----------cccc---hHHHHHHHHHHHHHHH
Confidence 223344556677888888865432 2332 2345677777766653
No 403
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.99 E-value=6.2e+02 Score=23.16 Aligned_cols=77 Identities=13% Similarity=0.252 Sum_probs=48.3
Q ss_pred HhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHH
Q 039269 142 TTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQ 221 (439)
Q Consensus 142 ~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~q 221 (439)
+..+..+=..|..||.. |. .||--+-|-+|++..-...+...+-.. .........
T Consensus 49 ~kql~~vs~~l~~tKkh----Ls-------qRId~vd~klDe~~ei~~~i~~eV~~v--------------~~dv~~i~~ 103 (126)
T PF07889_consen 49 SKQLEQVSESLSSTKKH----LS-------QRIDRVDDKLDEQKEISKQIKDEVTEV--------------REDVSQIGD 103 (126)
T ss_pred HHHHHHHHHHHHHHHHH----HH-------HHHHHHHhhHHHHHHHHHHHHHHHHHH--------------HhhHHHHHH
Confidence 44455555555555543 22 356666666666666555555544333 566677777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhc
Q 039269 222 ELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEak 243 (439)
+++.++..++.|.-...++|.+
T Consensus 104 dv~~v~~~V~~Le~ki~~ie~~ 125 (126)
T PF07889_consen 104 DVDSVQQMVEGLEGKIDEIEEK 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888888777777754
No 404
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=21.95 E-value=5e+02 Score=26.15 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=48.3
Q ss_pred ccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHhHHHHHHHHh
Q 039269 243 KSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRME---HADIA--NLKLLHECEILRNRL 311 (439)
Q Consensus 243 kskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e---~~~~a--r~KllhEc~iLr~RL 311 (439)
.+++...-..||.+.|.+....|..|+....+--..+.+-|++|+..== ..... =..||.-|=+=|..+
T Consensus 43 ~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf~~~~~~~i~~~~~flq~Ci~PR~~~ 116 (298)
T PF11262_consen 43 MSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWFSSKDPEKIEAITAFLQHCILPRALF 116 (298)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCChhhHHHHHHHHHHHHHHHhhC
Confidence 6777777788888999999999999988888888888888888875432 11111 135666665554443
No 405
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.84 E-value=3.5e+02 Score=31.47 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 162 NMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 162 ~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
.+.+.+...++.+.. .|.++.+--..+.++...-...+........+...+..+|..+++|++.|-..+...+
T Consensus 460 e~~~~~s~s~~~~~~-------~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~ei~~~~~~ln~~~qq~~~l~~~v~~~~ 532 (847)
T KOG0998|consen 460 ELDAQKSQSKEKFST-------TRKKKQEEPQWISSLDNDLNLLPLQLSNDNREISSLEKELNELQQQLSVLEGSVKAIE 532 (847)
T ss_pred hhhhhhhHHHhhhhh-------hhhhhhccccccccccchhhhcccccccchhhHHHHHHHHhhhHHHHhHHhhhhhhhh
Confidence 344444554777766 7777777777777776666666666666666777777777777777755544444444
Q ss_pred h
Q 039269 242 V 242 (439)
Q Consensus 242 a 242 (439)
+
T Consensus 533 ~ 533 (847)
T KOG0998|consen 533 S 533 (847)
T ss_pred h
Confidence 3
No 406
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.64 E-value=7e+02 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKS 244 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEaks 244 (439)
..+.....+++..+++++.....++.++|.++
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666666666654
No 407
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.64 E-value=9.8e+02 Score=25.39 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=38.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhcccc----chhHHHHHHHHHhhh
Q 039269 205 AESSKMSIIQENEMLLQELEVVREQLENLHKQH-EESEVKSKT----DVKLLVKEVKSLRSS 261 (439)
Q Consensus 205 ~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~-~ElEakska----d~KvLvKEVKsLR~s 261 (439)
.++-.-+.+.+++.|..|-|+.+-...-|.-++ .-|-++-+- |+--|+-|-|-|...
T Consensus 172 LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhpr~~DiDgll~ENkfLhak 233 (389)
T KOG4687|consen 172 LAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHPRAEDIDGLLAENKFLHAK 233 (389)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCchhhhhHHHHHhhHHHHHH
Confidence 344444559999999999999998888887553 344454443 566667676665543
No 408
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=21.49 E-value=4.8e+02 Score=27.44 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEV 265 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~el 265 (439)
.+|.+.++++++.|++.+...-.|....-+..-+-.+++..+-..|
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrL 48 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRL 48 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777776666666666666666655566655554444
No 409
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.37 E-value=8.5e+02 Score=25.99 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHh
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTT 143 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~t 143 (439)
.-+..++.+|..++....++-++++-..+...||..
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~ 106 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLED 106 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777777778743
No 410
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=21.36 E-value=1.9e+02 Score=31.73 Aligned_cols=58 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHH
Q 039269 206 ESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQ 267 (439)
Q Consensus 206 e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkq 267 (439)
.+..+........|.++|+.+|++++.++++..++|.|.+ .|--|++.|+.++..+++
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIk----eLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIE----KLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH----HHHHHHHHHHHHHHhhhc
No 411
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=21.32 E-value=6.2e+02 Score=23.43 Aligned_cols=43 Identities=26% Similarity=0.394 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQS 263 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~ 263 (439)
..+.+.+..+|....++++.|.+ +-.|..-|-+++..|.....
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~--------~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKK--------SAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554 24455555555555555444
No 412
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=21.24 E-value=1e+03 Score=25.54 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=21.3
Q ss_pred HHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhh
Q 039269 140 FLTTKVKDLEVELETTSENCKENMQQAVLNEKER 173 (439)
Q Consensus 140 fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr 173 (439)
..-.+|..|..+|...+....+.+++++-.-++.
T Consensus 255 ~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e 288 (582)
T PF09731_consen 255 HAKERIDALQKELAELKEEEEEELERALEEQREE 288 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777777777777666554443
No 413
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=21.14 E-value=1.1e+03 Score=25.69 Aligned_cols=128 Identities=24% Similarity=0.249 Sum_probs=63.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHH-------HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEV-------AVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKER 173 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~-------AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr 173 (439)
.|....-.-|....+-|...+.++.+++.=-|... ..-.=-..||.+|-.||..++.----.-.-.+=+|.++
T Consensus 123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~ 202 (522)
T PF05701_consen 123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAHIEAEEER 202 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888888888763333221 12223456777777777766543221111012223333
Q ss_pred h-hhhhccH--HHHHHHHHHHHHhhhhHHhh---hHhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039269 174 F-TQMQWDM--EELRKQLLETELKLKYEQDE---RARAESSKMSIIQENEMLLQELEVVRE 228 (439)
Q Consensus 174 ~-tqmQWdm--eElr~k~~e~E~~Lks~qde---k~~~e~~~~s~~~e~~~l~qEL~~~r~ 228 (439)
+ ..++|+- ..+...+-+-+.+|+...++ ....+.....+..+...|..||.....
T Consensus 203 ~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 203 IEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2333332 22233333344444433222 233344455556666666666666654
No 414
>PF14992 TMCO5: TMCO5 family
Probab=21.13 E-value=9.4e+02 Score=24.94 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhhHHhhhH------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhhc-cccchhHHH
Q 039269 184 LRKQLLETELKLKYEQDERA------RAESSKMSIIQENEMLLQELEVVREQLENLHKQH----EESEVK-SKTDVKLLV 252 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~------~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~----~ElEak-skad~KvLv 252 (439)
|=+|+++-|...++.+.+=+ ..+.....++.+.+.-+++|+.-...||-=.++. .++.-| ++-..+ ++
T Consensus 23 lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq~k~~e~~~~-~~ 101 (280)
T PF14992_consen 23 LLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQRKQDEQETN-VQ 101 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhhhhhccccCC-CC
Confidence 34556666666666433322 2223334445555555555555444444444443 444444 222233 55
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Q 039269 253 KEVKSLRSSQSEVKQELSRLMKEKL 277 (439)
Q Consensus 253 KEVKsLR~sq~elkqEl~~~~~eK~ 277 (439)
-|.-.+..+..+.|-.+.++...-.
T Consensus 102 ~e~~~~~~~lq~sk~~lqql~~~~~ 126 (280)
T PF14992_consen 102 CEDPQLSQSLQFSKNKLQQLLESCA 126 (280)
T ss_pred CCccchhcccHHhhhhHHHHHHHHH
Confidence 5666666666666655555544433
No 415
>PF14854 LURAP: Leucine rich adaptor protein
Probab=21.00 E-value=1.5e+02 Score=27.20 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=36.5
Q ss_pred HHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHH
Q 039269 141 LTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEEL 184 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeEl 184 (439)
|..|+.-|-.|+...|+--.+-|+|.+-. -|-|-.+-|-|||-
T Consensus 20 Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~v-NEsIe~~KWlmEEr 62 (121)
T PF14854_consen 20 LDAKLAFLRKEMAGLRQLDVKLLQQLLAV-NESIEEVKWLMEER 62 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHh
Confidence 55677777777888888888999999888 89999999999984
No 416
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=20.95 E-value=3.4e+02 Score=25.67 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEK 276 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK 276 (439)
+.+|-..+.++...++=|.=|+.|. ..|..|+..+...-.++++++.+.+++-
T Consensus 10 r~~L~~lk~~l~~a~rg~~lLk~Kr----d~L~~e~~~~~~~~~~~r~~~~~~~~~a 62 (204)
T PRK00373 10 RMELINLKRRLKLAERGHKLLKDKR----DELIMEFFDILDEAKKLREEVEEELEEA 62 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777777777777776664 5688888888888888888888776543
No 417
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=20.81 E-value=1e+03 Score=25.14 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=54.3
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhc--c
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE-------NLHKQHEESEVK--S 244 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le-------~L~k~~~ElEak--s 244 (439)
+.|.|--|-|+-..++.=+.+++-+-+-.-..+....-+-.||--|+|+|+++..... +.+.+...+=.+ +
T Consensus 188 L~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~a 267 (305)
T PF14915_consen 188 LSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQA 267 (305)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555556667777777788778888888754433 333333322222 2
Q ss_pred ccchhHH-HHH-HHHHhhhhHHHHHHHHHHHHHHHH
Q 039269 245 KTDVKLL-VKE-VKSLRSSQSEVKQELSRLMKEKLE 278 (439)
Q Consensus 245 kad~KvL-vKE-VKsLR~sq~elkqEl~~~~~eK~e 278 (439)
..++.+| +.| =|-|=+.-..||.-+-+|-+||++
T Consensus 268 e~ekq~lllEErNKeL~ne~n~LkEr~~qyEkEKaE 303 (305)
T PF14915_consen 268 ESEKQVLLLEERNKELINECNHLKERLYQYEKEKAE 303 (305)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2233333 221 233444445555555555555543
No 418
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.78 E-value=4.3e+02 Score=26.86 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~~~eK~el 279 (439)
.|++|+++++....+|+.|.+.|-+.-...
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999888888777665444333
No 419
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=20.76 E-value=5.8e+02 Score=22.48 Aligned_cols=39 Identities=23% Similarity=0.352 Sum_probs=23.7
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 244 SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 244 skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
.|+++..+..+++.|..+-.++.+++... ..+.....++
T Consensus 60 ~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~ 98 (150)
T PF07200_consen 60 LRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALL 98 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHH
Confidence 35566666777777777777777766665 3344444443
No 420
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.74 E-value=7.1e+02 Score=27.89 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=56.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR---SSQSEVKQELSRLMKEKLEVEGVLQ 284 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR---~sq~elkqEl~~~~~eK~elE~~L~ 284 (439)
....+......|..++...+.+...|++.|.++- .++ ---++-||..|= +++..|.+-..-++.-....-.+|.
T Consensus 379 ~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~-~~r--~dW~laEae~Ll~lA~q~L~l~~dv~~A~~~L~~AD~~La 455 (656)
T PRK06975 379 SVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS-RNR--DDWMIAEVEQMLSSASQQLQLTGNVQLALIALQNADARLA 455 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCh--hhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3344556666777788888888888888888873 444 445666887653 2333344444444433333333333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 039269 285 KEKQRMEHADIANLKLLHECEILRN 309 (439)
Q Consensus 285 ~Ekq~~e~~~~ar~KllhEc~iLr~ 309 (439)
+=. .-.....|+-|-+++..|+.
T Consensus 456 ~~~--~P~l~~lR~Ala~Di~~L~~ 478 (656)
T PRK06975 456 TSD--SPQAVAVRKAIAQDIERLKA 478 (656)
T ss_pred hcC--CcchHHHHHHHHHHHHHHhc
Confidence 211 12246678888888877764
No 421
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=20.71 E-value=4.6e+02 Score=21.21 Aligned_cols=101 Identities=17% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 039269 216 NEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM-KEKLEVEGVLQKEKQRMEHAD 294 (439)
Q Consensus 216 ~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~-~eK~elE~~L~~Ekq~~e~~~ 294 (439)
.+.+......+...+..+......++.+...-+.-+..++..|+.-..+-++++-.-+ .+..+....|....+..+.
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~-- 86 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ-- 86 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 3334444444444455555555555555555555666666666666655555443322 2333444555555544443
Q ss_pred HHHHHHHhHHHHHHHHhhhhc-cccc
Q 039269 295 IANLKLLHECEILRNRLQECS-VNFL 319 (439)
Q Consensus 295 ~ar~KllhEc~iLr~RLQECn-~~~l 319 (439)
...++-+=|.-....|++|+ +.|+
T Consensus 87 -~l~~l~~~~~~~e~~l~~~~~~e~L 111 (127)
T smart00502 87 -KQEKLSHAINFTEEALNSGDPTELL 111 (127)
T ss_pred -HHHHHHHHHHHHHHHHHcCCChHHH
Confidence 34455555666666677644 3554
No 422
>PRK12705 hypothetical protein; Provisional
Probab=20.50 E-value=1.2e+03 Score=25.88 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.4
Q ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 039269 380 RSDDELRQMLTDIFIDNARLRMQVNTVI 407 (439)
Q Consensus 380 ~tddElRKmLaDlfiDNA~LRkqvNSv~ 407 (439)
.+---|+++++|=-|+.++.-.-+|++-
T Consensus 253 ia~~~l~~Li~dgri~p~rIeevv~~~~ 280 (508)
T PRK12705 253 IARLTLEKLLADGRIHPARIEEYVQKAN 280 (508)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3556778888888888888777666653
No 423
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=20.46 E-value=5.2e+02 Score=28.16 Aligned_cols=71 Identities=24% Similarity=0.337 Sum_probs=39.5
Q ss_pred chHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhh
Q 039269 123 DTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDER 202 (439)
Q Consensus 123 DmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek 202 (439)
|-.=|+.||-+|+|+- ..|++|++.=|=-+|-|+ |-++..-+.-.
T Consensus 308 dq~~l~~RLA~EiA~a----------------------~~~ekALl~RR~L~tG~~-------------ePnva~~~~A~ 352 (418)
T TIGR03755 308 DQSLLVQRLASEIALA----------------------DTLEKALLMRRMLLTGLQ-------------EPNVAANKPAQ 352 (418)
T ss_pred hhHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhccc-------------CcccccCHHHH
Confidence 4455778888888874 356778887555566543 22333332223
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHH
Q 039269 203 ARAESSKMSIIQENEMLLQELEVVRE 228 (439)
Q Consensus 203 ~~~e~~~~s~~~e~~~l~qEL~~~r~ 228 (439)
...+........|.+.|..|++..|+
T Consensus 353 ~~~~~~i~~LDrEI~~Lk~E~~lRk~ 378 (418)
T TIGR03755 353 QEVDKAIDKLDREINNLKTELELRKE 378 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334446666666666655444
No 424
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.44 E-value=9.3e+02 Score=24.62 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=123.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccH
Q 039269 102 QRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDM 181 (439)
Q Consensus 102 qR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdm 181 (439)
...++.+=+..++++..+..-+.+.+.+-++..+.+|+=|-+--+.|-..--.++..|+.. +--.|..|-.- -
T Consensus 37 e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~---~~eee~kR~el----~ 109 (309)
T PF09728_consen 37 EMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR---AREEEEKRKEL----S 109 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH----H
Confidence 3455667778889999999999999999999999999877666555544443333322221 11111111000 0
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh------hhh--------------
Q 039269 182 EELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHE------ESE-------------- 241 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~------ElE-------------- 241 (439)
+-+...+..+...+... .........+|..|.+-|..+-+|++.-.+++. ++|
T Consensus 110 ~kFq~~L~dIq~~~ee~-------~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~ 182 (309)
T PF09728_consen 110 EKFQATLKDIQAQMEEQ-------SERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEE 182 (309)
T ss_pred HHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 01111111222222111 112222566677777777666555553322222 111
Q ss_pred -hccccchhHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHH
Q 039269 242 -VKSKTDVKLLVK-------EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE-------KQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 242 -akskad~KvLvK-------EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E-------kq~~e~~~~ar~KllhEc~i 306 (439)
.+..+-.+.+.. .|..++..-.+|+..|+-|..--.++...|.+= |+-.+.-.-.-++|=.|+..
T Consensus 183 ~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~ 262 (309)
T PF09728_consen 183 AEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT 262 (309)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112223344444 788899999999999999999888888887653 33445555667889999999
Q ss_pred HHHHhhhhccccc
Q 039269 307 LRNRLQECSVNFL 319 (439)
Q Consensus 307 Lr~RLQECn~~~l 319 (439)
++.|--.||..++
T Consensus 263 ~k~k~e~~n~~l~ 275 (309)
T PF09728_consen 263 WKSKWEKSNKALI 275 (309)
T ss_pred HHHHHHHHhHHHH
Confidence 9999999998775
No 425
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=20.25 E-value=1.1e+03 Score=25.18 Aligned_cols=55 Identities=18% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHhhhhhhhhcc--------ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 230 LENLHKQHEESEVKS--------KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 230 le~L~k~~~ElEaks--------kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
++.+.+++.+++.+. .+..+-|.||...|+.-...+++ +.+...+..++..++..
T Consensus 25 l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~-l~~~~~e~~~~~ell~~ 87 (367)
T PRK00578 25 VDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEE-LRQRLDDLEELLELAEE 87 (367)
T ss_pred HHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 344455555555332 22344566777777666555544 55556666667776644
No 426
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.14 E-value=3.2e+02 Score=23.69 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=33.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANL 298 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~ 298 (439)
++.++.....|.+|..|.-.||...+.-+..=+.+..+..++|+
T Consensus 25 ~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqknee~~~~ 68 (87)
T PF10883_consen 25 VKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNEENTRR 68 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Confidence 56677778888888888888888888888777767666666554
No 427
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=20.14 E-value=2.7e+02 Score=29.22 Aligned_cols=70 Identities=29% Similarity=0.346 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc--cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSK--TDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVE 280 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEaksk--ad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE 280 (439)
....+.+.|..++..++++++.+.+.+..+....+ ..-.-....++.|+....++.+++.+...+..+++
T Consensus 331 ~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~ 402 (451)
T PF03961_consen 331 ELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELK 402 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666666655444443211 11112233444444444444444444444444333
No 428
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.05 E-value=3.3e+02 Score=22.59 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
||.|++.+-..+.+..| .+.+.+.-..+.+.|.+++...++.|..+...
T Consensus 33 lk~Klq~ar~~i~~lpg----i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 33 LKHKLQKARAAIRELPG----IDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHhCCC----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666665555555544 66667777788888888888888888877654
No 429
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.02 E-value=7.9e+02 Score=25.00 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=5.8
Q ss_pred HHHHhHHHHHH
Q 039269 298 LKLLHECEILR 308 (439)
Q Consensus 298 ~KllhEc~iLr 308 (439)
++=+.|++-++
T Consensus 103 k~di~Eiks~~ 113 (344)
T PF12777_consen 103 KSDISEIKSYA 113 (344)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhC
Confidence 34456665544
Done!