Query 039269
Match_columns 439
No_of_seqs 30 out of 32
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 13:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.8 0.015 5.2E-07 49.7 26.6 26 254-279 224-249 (284)
2 1c1g_A Tropomyosin; contractIl 97.6 0.027 9.2E-07 48.2 26.6 51 106-156 4-54 (284)
3 1i84_S Smooth muscle myosin he 97.0 0.0011 3.9E-08 73.4 8.4 62 180-241 921-982 (1184)
4 1i84_S Smooth muscle myosin he 96.9 0.0025 8.4E-08 70.8 9.4 72 169-240 903-974 (1184)
5 3oja_B Anopheles plasmodium-re 96.0 0.015 5.1E-07 58.1 8.1 79 235-313 505-583 (597)
6 3o0z_A RHO-associated protein 95.9 1.1 3.6E-05 41.2 19.5 148 142-312 5-153 (168)
7 2dfs_A Myosin-5A; myosin-V, in 95.8 0.26 8.7E-06 55.1 17.6 96 209-311 979-1079(1080)
8 3na7_A HP0958; flagellar bioge 95.8 0.41 1.4E-05 44.6 16.4 160 136-310 25-187 (256)
9 3na7_A HP0958; flagellar bioge 95.6 0.93 3.2E-05 42.2 17.9 153 105-272 22-176 (256)
10 2dfs_A Myosin-5A; myosin-V, in 93.5 1.2 4E-05 50.0 15.2 37 251-287 982-1018(1080)
11 3vkg_A Dynein heavy chain, cyt 93.1 6.5 0.00022 49.0 21.9 44 250-293 2032-2075(3245)
12 3oja_B Anopheles plasmodium-re 92.7 1.8 6E-05 43.3 13.8 63 209-275 518-580 (597)
13 2v71_A Nuclear distribution pr 92.2 2.4 8.4E-05 39.3 13.1 168 100-310 9-176 (189)
14 1ic2_A Tropomyosin alpha chain 91.6 1.2 4.2E-05 35.3 9.1 73 171-243 5-77 (81)
15 1nfn_A Apolipoprotein E3; lipi 90.7 2.1 7.1E-05 38.9 10.9 91 105-198 25-125 (191)
16 3vkg_A Dynein heavy chain, cyt 90.6 23 0.0008 44.4 22.6 91 210-304 2010-2107(3245)
17 3oja_A Leucine-rich immune mol 90.3 1.7 5.7E-05 42.8 10.7 66 222-287 411-476 (487)
18 3s84_A Apolipoprotein A-IV; fo 87.3 12 0.00041 35.8 13.9 24 174-197 61-84 (273)
19 2fxo_A Myosin heavy chain, car 86.4 14 0.0005 31.4 15.7 109 181-314 15-123 (129)
20 3u1c_A Tropomyosin alpha-1 cha 86.0 5.8 0.0002 32.8 9.7 71 171-241 8-78 (101)
21 3ghg_A Fibrinogen alpha chain; 85.1 1.5 5.2E-05 46.4 7.0 72 247-318 103-175 (562)
22 2ocy_A RAB guanine nucleotide 84.9 22 0.00075 32.1 13.6 64 171-234 43-107 (154)
23 2ocy_A RAB guanine nucleotide 84.4 14 0.00046 33.5 12.0 88 209-311 8-95 (154)
24 3u59_A Tropomyosin beta chain; 83.5 6.3 0.00021 32.4 8.7 71 171-241 8-78 (101)
25 3o0z_A RHO-associated protein 83.4 27 0.00093 32.0 15.3 23 172-201 6-28 (168)
26 1s35_A Beta-I spectrin, spectr 83.0 22 0.00074 30.5 14.5 164 176-361 4-177 (214)
27 3hnw_A Uncharacterized protein 82.8 3.9 0.00013 35.8 7.6 62 180-241 69-130 (138)
28 3ghg_A Fibrinogen alpha chain; 81.8 23 0.0008 37.7 14.1 138 90-245 37-193 (562)
29 3q8t_A Beclin-1; autophagy, AT 81.7 13 0.00044 30.7 9.9 67 248-314 6-72 (96)
30 3kbt_A Beta-I spectrin, spectr 80.6 33 0.0011 31.1 13.6 122 176-314 8-129 (326)
31 3u1c_A Tropomyosin alpha-1 cha 79.5 25 0.00085 29.0 13.1 93 209-312 4-96 (101)
32 3tnu_B Keratin, type II cytosk 78.6 21 0.0007 30.3 10.5 30 181-210 38-67 (129)
33 2l7b_A Apolipoprotein E, APO-E 77.0 13 0.00045 36.2 10.0 27 105-131 33-59 (307)
34 3tnu_A Keratin, type I cytoske 76.7 21 0.00071 30.4 10.1 30 181-210 40-69 (131)
35 2b9c_A Striated-muscle alpha t 76.4 16 0.00054 32.4 9.5 113 113-233 1-120 (147)
36 2eqb_B RAB guanine nucleotide 76.3 30 0.001 29.3 10.6 91 220-314 4-95 (97)
37 1ses_A Seryl-tRNA synthetase; 74.6 16 0.00054 36.7 10.1 57 210-269 31-87 (421)
38 2dq0_A Seryl-tRNA synthetase; 74.0 29 0.001 35.2 12.0 60 210-270 34-93 (455)
39 3u59_A Tropomyosin beta chain; 71.9 39 0.0013 27.6 12.9 93 209-312 4-96 (101)
40 3bas_A Myosin heavy chain, str 71.3 21 0.00071 28.9 8.3 61 220-284 20-80 (89)
41 3s84_A Apolipoprotein A-IV; fo 70.4 76 0.0026 30.2 16.4 85 163-262 163-247 (273)
42 3oja_A Leucine-rich immune mol 69.4 59 0.002 31.8 12.7 68 239-306 396-463 (487)
43 2dq3_A Seryl-tRNA synthetase; 68.7 25 0.00085 35.3 10.0 62 208-270 31-92 (425)
44 2xv5_A Lamin-A/C; structural p 68.3 12 0.00041 29.9 6.1 49 101-156 5-53 (74)
45 2a01_A Apolipoprotein A-I; fou 67.8 63 0.0022 29.9 11.9 24 108-131 10-33 (243)
46 3okq_A BUD site selection prot 67.6 22 0.00075 31.9 8.3 67 200-266 7-74 (141)
47 3qne_A Seryl-tRNA synthetase, 67.5 19 0.00065 37.4 9.1 58 213-271 39-96 (485)
48 3qh9_A Liprin-beta-2; coiled-c 67.1 24 0.00083 29.1 7.8 59 178-236 18-76 (81)
49 3tnu_B Keratin, type II cytosk 66.9 57 0.002 27.5 11.1 68 208-275 37-104 (129)
50 3r2p_A Apolipoprotein A-I; amp 66.8 48 0.0016 29.3 10.4 23 176-198 86-108 (185)
51 2fxo_A Myosin heavy chain, car 66.4 60 0.002 27.5 14.0 71 163-233 53-123 (129)
52 2eqb_B RAB guanine nucleotide 66.0 23 0.0008 29.9 7.7 61 251-311 3-63 (97)
53 2v71_A Nuclear distribution pr 65.4 87 0.003 29.0 17.0 90 173-272 25-114 (189)
54 2oqq_A Transcription factor HY 64.9 9.9 0.00034 28.1 4.6 36 188-223 5-40 (42)
55 2jee_A YIIU; FTSZ, septum, coi 63.7 41 0.0014 27.6 8.6 65 162-237 14-78 (81)
56 1wle_A Seryl-tRNA synthetase; 63.2 46 0.0016 34.4 10.9 92 177-268 39-138 (501)
57 3i00_A HIP-I, huntingtin-inter 62.8 61 0.0021 27.9 9.9 69 211-314 12-80 (120)
58 2yy0_A C-MYC-binding protein; 61.5 8.6 0.00029 28.9 3.9 32 212-243 17-48 (53)
59 1sjj_A Actinin; 3-helix bundle 61.4 1.3E+02 0.0044 31.6 14.0 158 141-314 340-504 (863)
60 3tnu_A Keratin, type I cytoske 60.8 77 0.0026 26.9 11.0 69 207-275 38-106 (131)
61 1wt6_A Myotonin-protein kinase 60.7 26 0.0009 28.9 6.9 51 213-267 23-73 (81)
62 1ic2_A Tropomyosin alpha chain 60.2 61 0.0021 25.5 9.6 72 212-287 4-75 (81)
63 1cii_A Colicin IA; bacteriocin 56.8 99 0.0034 32.9 12.0 113 82-230 284-407 (602)
64 3i00_A HIP-I, huntingtin-inter 56.1 40 0.0014 29.1 7.6 91 120-245 9-102 (120)
65 1u5p_A Spectrin alpha chain, b 55.8 97 0.0033 26.4 14.2 125 174-315 5-129 (216)
66 4emc_A Monopolin complex subun 55.3 21 0.00073 33.4 6.2 37 208-244 21-57 (190)
67 3fb2_A Spectrin alpha chain, b 55.1 1E+02 0.0036 26.6 14.3 164 175-361 16-189 (218)
68 2lw1_A ABC transporter ATP-bin 55.0 59 0.002 25.9 8.0 63 220-282 21-85 (89)
69 2v66_B Nuclear distribution pr 54.8 1E+02 0.0035 26.4 10.5 81 141-225 8-102 (111)
70 2v4h_A NF-kappa-B essential mo 54.7 1.1E+02 0.0036 26.6 11.0 15 184-198 67-81 (110)
71 3mq9_A Bone marrow stromal ant 53.4 1.7E+02 0.0057 28.5 13.2 52 147-198 370-423 (471)
72 1cun_A Protein (alpha spectrin 52.1 1.1E+02 0.0037 25.9 14.1 135 174-325 2-136 (213)
73 3fb2_A Spectrin alpha chain, b 51.8 1.2E+02 0.0041 26.3 13.5 129 106-242 58-187 (218)
74 3bas_A Myosin heavy chain, str 50.5 97 0.0033 24.9 10.6 63 181-243 16-78 (89)
75 2e7s_A RAB guanine nucleotide 50.5 37 0.0013 30.2 6.6 49 184-232 44-93 (135)
76 1nkp_B MAX protein, MYC proto- 50.1 41 0.0014 26.3 6.3 24 165-188 5-28 (83)
77 2jee_A YIIU; FTSZ, septum, coi 49.2 91 0.0031 25.6 8.3 61 209-273 15-75 (81)
78 4fla_A Regulation of nuclear P 49.1 1E+02 0.0035 27.4 9.3 72 215-300 69-140 (152)
79 3hnw_A Uncharacterized protein 49.1 67 0.0023 28.0 8.0 18 252-269 116-133 (138)
80 1go4_E MAD1 (mitotic arrest de 48.9 1.1E+02 0.0039 25.8 9.1 20 293-312 73-92 (100)
81 3ol1_A Vimentin; structural ge 48.5 1.1E+02 0.0038 25.7 9.1 21 218-238 17-37 (119)
82 3qh9_A Liprin-beta-2; coiled-c 48.4 1.1E+02 0.0036 25.4 8.5 31 250-280 23-53 (81)
83 1m1j_C Fibrinogen gamma chain; 47.1 2.5E+02 0.0084 28.6 13.8 73 213-285 40-116 (409)
84 2lem_A Apolipoprotein A-I; lip 45.6 38 0.0013 30.8 6.2 16 177-192 85-100 (216)
85 1wt6_A Myotonin-protein kinase 45.1 1.1E+02 0.0038 25.2 8.2 39 184-236 36-74 (81)
86 1gk4_A Vimentin; intermediate 44.9 1.2E+02 0.0039 24.1 9.7 55 222-276 2-56 (84)
87 3cl3_D NF-kappa-B essential mo 44.5 49 0.0017 29.4 6.4 82 130-239 17-101 (130)
88 1m1j_B Fibrinogen beta chain; 44.0 2.9E+02 0.01 28.6 13.2 11 90-100 73-83 (464)
89 1quu_A Human skeletal muscle a 43.9 1.7E+02 0.0059 25.9 14.4 137 175-319 17-153 (250)
90 1uix_A RHO-associated kinase; 43.9 1.2E+02 0.0039 24.5 8.0 28 274-301 39-66 (71)
91 1nfn_A Apolipoprotein E3; lipi 43.2 1.9E+02 0.0064 26.1 10.8 25 174-198 123-147 (191)
92 1x8y_A Lamin A/C; structural p 43.2 66 0.0023 25.8 6.6 21 223-243 5-25 (86)
93 3swk_A Vimentin; cytoskeleton, 43.1 81 0.0028 25.4 7.1 65 254-318 1-65 (86)
94 3cvf_A Homer-3, homer protein 43.0 1.1E+02 0.0038 24.9 7.9 15 136-150 6-20 (79)
95 1fxk_A Prefoldin; archaeal pro 42.9 92 0.0032 24.6 7.4 21 248-268 81-101 (107)
96 2w6b_A RHO guanine nucleotide 42.8 51 0.0017 25.6 5.5 24 249-272 6-29 (56)
97 2i1j_A Moesin; FERM, coiled-co 42.2 50 0.0017 34.5 7.2 158 150-319 300-460 (575)
98 3iv1_A Tumor susceptibility ge 42.0 95 0.0032 25.3 7.3 57 171-241 17-73 (78)
99 1gk6_A Vimentin; intermediate 42.0 58 0.002 24.5 5.7 45 105-156 4-48 (59)
100 2d1l_A Metastasis suppressor p 41.6 2.4E+02 0.0082 26.9 12.4 56 275-339 187-249 (253)
101 2xnx_M M protein, M1-BC1; cell 41.5 61 0.0021 29.2 6.7 19 177-195 1-19 (146)
102 1hci_A Alpha-actinin 2; triple 41.5 2.4E+02 0.0084 27.0 16.5 74 174-249 133-207 (476)
103 3mtu_A Tropomyosin alpha-1 cha 41.2 97 0.0033 24.4 7.2 48 109-156 3-50 (75)
104 1ik9_A DNA repair protein XRCC 40.9 1.1E+02 0.0037 28.4 8.6 31 253-283 146-176 (213)
105 1t6f_A Geminin; coiled-coil, c 40.7 40 0.0014 24.3 4.3 31 210-240 3-33 (37)
106 3okq_A BUD site selection prot 39.1 2.1E+02 0.0073 25.6 10.3 65 180-244 62-130 (141)
107 4etp_A Kinesin-like protein KA 38.6 63 0.0022 32.2 7.1 58 246-310 3-60 (403)
108 2zqm_A Prefoldin beta subunit 37.6 1.5E+02 0.0053 23.5 8.5 24 248-271 86-109 (117)
109 4h22_A Leucine-rich repeat fli 37.5 85 0.0029 26.9 6.6 22 251-272 56-77 (103)
110 3lay_A Zinc resistance-associa 37.4 1.5E+02 0.0053 26.8 8.8 46 219-268 90-135 (175)
111 1gs9_A Apolipoprotein E, APOE4 36.8 2.1E+02 0.0072 25.3 9.5 105 104-231 54-160 (165)
112 3lss_A Seryl-tRNA synthetase; 36.3 1.1E+02 0.0039 31.6 8.7 22 217-238 47-68 (484)
113 2l5g_B Putative uncharacterize 35.0 44 0.0015 24.7 3.9 37 208-244 3-39 (42)
114 1ik9_A DNA repair protein XRCC 34.8 2.8E+02 0.0095 25.7 11.0 59 213-271 145-204 (213)
115 1ci6_A Transcription factor AT 34.2 70 0.0024 24.3 5.1 36 248-283 25-60 (63)
116 2wt7_A Proto-oncogene protein 34.1 79 0.0027 23.9 5.4 33 251-283 28-60 (63)
117 4e61_A Protein BIM1; EB1-like 34.0 89 0.0031 26.8 6.2 36 250-285 22-57 (106)
118 1j1d_B Troponin T, TNT; THIN f 33.9 1.1E+02 0.0036 26.1 6.7 47 165-211 27-74 (106)
119 3l4q_C Phosphatidylinositol 3- 33.3 2.8E+02 0.0096 25.3 13.3 56 180-237 11-68 (170)
120 1t3j_A Mitofusin 1; coiled coi 32.5 91 0.0031 26.3 6.0 44 105-148 33-76 (96)
121 4h22_A Leucine-rich repeat fli 32.3 2.2E+02 0.0074 24.4 8.3 61 246-313 23-83 (103)
122 2a01_A Apolipoprotein A-I; fou 32.2 3E+02 0.01 25.3 14.7 74 105-195 52-126 (243)
123 1hlo_A Protein (transcription 32.0 1.5E+02 0.0051 23.0 6.9 64 164-234 14-77 (80)
124 1m1j_B Fibrinogen beta chain; 30.9 3.4E+02 0.012 28.2 11.1 31 110-140 91-122 (464)
125 2dq0_A Seryl-tRNA synthetase; 30.7 1.3E+02 0.0045 30.5 8.0 34 246-279 52-88 (455)
126 3qne_A Seryl-tRNA synthetase, 29.5 1.5E+02 0.0053 30.7 8.3 15 246-260 54-68 (485)
127 1m1j_C Fibrinogen gamma chain; 29.4 4.6E+02 0.016 26.6 12.4 43 106-148 25-67 (409)
128 2lw1_A ABC transporter ATP-bin 29.4 1.8E+02 0.0062 23.0 7.1 63 180-243 23-85 (89)
129 2oxj_A Hybrid alpha/beta pepti 29.1 83 0.0028 22.3 4.3 19 212-230 13-31 (34)
130 3iox_A AGI/II, PA; alpha helix 28.9 5.3E+02 0.018 27.2 12.2 35 191-225 7-41 (497)
131 3q8t_A Beclin-1; autophagy, AT 28.6 2.4E+02 0.0083 23.0 9.4 62 216-281 6-67 (96)
132 2l7b_A Apolipoprotein E, APO-E 28.4 4.2E+02 0.014 25.7 15.1 22 175-196 132-153 (307)
133 3lay_A Zinc resistance-associa 28.0 66 0.0023 29.2 4.7 58 96-153 66-123 (175)
134 3u06_A Protein claret segregat 27.1 95 0.0033 31.2 6.2 56 251-313 8-63 (412)
135 3a7p_A Autophagy protein 16; c 27.0 3.5E+02 0.012 24.4 11.5 110 91-229 25-139 (152)
136 1x79_B RAB GTPase binding effe 26.9 3E+02 0.01 23.6 11.1 76 210-285 2-77 (112)
137 1ci6_A Transcription factor AT 26.1 1.7E+02 0.0059 22.1 6.1 21 213-233 36-56 (63)
138 2v66_B Nuclear distribution pr 26.0 3.1E+02 0.011 23.5 12.0 92 172-284 10-101 (111)
139 3lbx_B Beta-I spectrin, spectr 25.4 3.1E+02 0.011 23.2 12.4 126 101-234 44-170 (185)
140 1s1c_X RHO-associated, coiled- 25.4 2.6E+02 0.009 22.4 8.4 28 274-301 39-66 (71)
141 2cly_A ATP synthase B chain, m 25.3 2.8E+02 0.0095 26.0 8.6 41 135-179 76-116 (214)
142 2e7s_A RAB guanine nucleotide 25.1 1.1E+02 0.0037 27.2 5.5 53 261-313 61-114 (135)
143 2dq3_A Seryl-tRNA synthetase; 25.0 1.4E+02 0.0047 29.9 6.9 14 319-332 116-129 (425)
144 3m9b_A Proteasome-associated A 25.0 84 0.0029 30.4 5.1 9 222-230 83-91 (251)
145 3edu_A Beta-I spectrin, spectr 24.8 3.3E+02 0.011 23.4 13.7 164 176-360 5-176 (218)
146 3jsv_C NF-kappa-B essential mo 24.2 2.9E+02 0.0099 23.3 7.6 20 180-199 3-22 (94)
147 3r2p_A Apolipoprotein A-I; amp 23.9 3.4E+02 0.012 23.8 8.5 24 175-198 107-130 (185)
148 3l4f_A RHO guanine nucleotide 23.9 1.6E+02 0.0053 23.2 5.5 22 296-317 36-57 (61)
149 1hjb_A Ccaat/enhancer binding 23.2 1.8E+02 0.0062 23.8 6.1 24 213-236 49-72 (87)
150 1deb_A APC protein, adenomatou 23.1 1.3E+02 0.0045 23.1 4.8 33 248-280 5-37 (54)
151 1gu4_A CAAT/enhancer binding p 22.9 1.8E+02 0.0061 23.4 5.9 23 213-235 49-71 (78)
152 1t2k_D Cyclic-AMP-dependent tr 22.9 2.2E+02 0.0076 21.1 6.1 23 213-235 35-57 (61)
153 2avr_X Adhesion A; antiparalle 22.6 3.8E+02 0.013 23.3 11.4 57 220-278 40-96 (119)
154 1ez3_A Syntaxin-1A; three heli 22.4 3E+02 0.01 22.0 8.8 49 210-258 8-62 (127)
155 1vcs_A Vesicle transport throu 22.2 3.2E+02 0.011 22.2 8.2 58 172-235 38-95 (102)
156 4e17_B Catenin alpha-1; four h 22.1 55 0.0019 23.9 2.4 18 296-313 13-30 (40)
157 3swk_A Vimentin; cytoskeleton, 22.0 3.1E+02 0.011 22.0 9.2 27 213-239 13-39 (86)
158 3c3f_A Alpha/beta peptide with 21.9 1.4E+02 0.0046 21.2 4.3 20 211-230 12-31 (34)
159 3kin_B Kinesin heavy chain; mo 21.4 1.1E+02 0.0036 25.9 4.5 35 122-156 82-116 (117)
160 1t2k_D Cyclic-AMP-dependent tr 21.4 1.6E+02 0.0055 21.8 5.1 15 252-266 42-56 (61)
161 4dnd_A Syntaxin-10, SYN10; str 21.2 3.9E+02 0.013 22.9 8.9 30 212-241 65-94 (130)
162 3m91_A Proteasome-associated A 21.1 2.1E+02 0.0071 21.5 5.5 33 208-240 17-49 (51)
163 3s9g_A Protein hexim1; cyclin 20.9 2.8E+02 0.0095 23.8 6.9 59 208-270 31-89 (104)
164 3u06_A Protein claret segregat 20.8 2.9E+02 0.0098 27.8 8.2 55 263-317 6-60 (412)
165 3s4r_A Vimentin; alpha-helix, 20.8 3.4E+02 0.012 22.0 12.1 26 217-242 52-77 (93)
166 2yy0_A C-MYC-binding protein; 20.7 1.1E+02 0.0039 22.8 4.1 32 207-238 19-50 (53)
167 1j1e_C Troponin I, TNI; THIN f 20.6 5E+02 0.017 23.9 11.5 67 161-227 39-106 (180)
168 1wle_A Seryl-tRNA synthetase; 20.5 3E+02 0.01 28.5 8.5 27 244-270 121-147 (501)
169 1bf5_A Signal transducer and a 20.2 6.7E+02 0.023 26.8 11.1 23 180-202 10-32 (575)
170 1cxz_B Protein (PKN); protein- 20.0 2.9E+02 0.0099 22.8 6.7 60 258-317 23-85 (86)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.76 E-value=0.015 Score=49.70 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~el 279 (439)
++..++.....+...+...-.....+
T Consensus 224 ~l~~l~~~~~~~~~~~~~~~~~~~~~ 249 (284)
T 1c1g_A 224 EIKVLSDKLKEAETRAEFAERSVTKL 249 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.60 E-value=0.027 Score=48.17 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
|+.=|.+|+..+..+....++|-..+....+-..-+...+..++.++....
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 54 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATE 54 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666655555544444444445555554444433
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.03 E-value=0.0011 Score=73.43 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
..+++..+..+++..+...+......+..+..+..+.+.+.++++.++++++.+.+++.+++
T Consensus 921 ~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le 982 (1184)
T 1i84_S 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444555555555555544444444443
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.88 E-value=0.0025 Score=70.78 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=18.1
Q ss_pred HhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 169 NEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 169 ~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
.+++.+.......+.+..+..+++..++..+.+-...+........+...+.+++..++++++.+.+++.++
T Consensus 903 ~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l 974 (1184)
T 1i84_S 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKL 974 (1184)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444555554444444444444444444444444444444444444444444333
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.00 E-value=0.015 Score=58.10 Aligned_cols=79 Identities=11% Similarity=0.152 Sum_probs=51.7
Q ss_pred hhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 235 KQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 235 k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
+.+++...+.+.+...+.++...++.+..+.++++.+.-+++.++|+.+.+.+++.+..+.-...+-.|...|.+.+++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444555566666777777777777777777777888888888888877776666666666666666555543
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.86 E-value=1.1 Score=41.18 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=105.1
Q ss_pred HhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHH
Q 039269 142 TTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQ 221 (439)
Q Consensus 142 ~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~q 221 (439)
..||.-||-.|+.+..++|---..|+=- |-..|- ++...+..|.++...++--...+..+.+.-.++-.|.-
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rl-kK~~tE-------l~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRL-RKSHTE-------MSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999998777777655 666665 78888888888888887777777777777777777777
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 039269 222 ELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANL-KL 300 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~-Kl 300 (439)
+|++-|...-..+..+.+++. -+..|--|++.+|.+.+.+.-+..++....+.+ || ..+... .+
T Consensus 77 ~L~qEr~~r~q~se~~~elq~----ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l------EK-----e~a~~eid~ 141 (168)
T 3o0z_A 77 ILEAERRDRGHDSEMIGDLQA----RITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS------EK-----EKNNLEIDL 141 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH-----HHHhhhHHH
Confidence 777776555555666666666 366788899999998887777776665444444 44 222222 57
Q ss_pred HhHHHHHHHHhh
Q 039269 301 LHECEILRNRLQ 312 (439)
Q Consensus 301 lhEc~iLr~RLQ 312 (439)
.+|...|++|++
T Consensus 142 ~~eLKalQ~~~e 153 (168)
T 3o0z_A 142 NYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 789999999885
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.83 E-value=0.26 Score=55.12 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
+..+..+...|.+|++.++++++.+.++++++|.+..--.. .|......|++|...+-++..+++..+.+..+
T Consensus 979 ~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~-------~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-------ETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666777777777777777777766554321112 33333333444444444444555533322222
Q ss_pred -----HHHHHHHHHHHHHhHHHHHHHHh
Q 039269 289 -----RMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 289 -----~~e~~~~ar~KllhEc~iLr~RL 311 (439)
........+..+-.|...-|.|-
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1080)
T 2dfs_A 1052 EITETMEKKLVEETKQLELDLNDERLRY 1079 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12222344455555655555543
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.81 E-value=0.41 Score=44.58 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=88.7
Q ss_pred HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHH
Q 039269 136 AVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQE 215 (439)
Q Consensus 136 AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e 215 (439)
..+.-|-..|.+|+.+++..+..-.. ++..+-+=+..+.....++++++.+...++.+|.+-.+ ..|
T Consensus 25 ~~~~~lp~el~~le~~~~~l~~~~~~-~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~------------~kE 91 (256)
T 3na7_A 25 PLIREKRKDLDKALNDKEAKNKAILN-LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKS------------ERE 91 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS------------SSH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC------------HHH
Confidence 33444556677777777666554433 33333333455677788888888888888888765422 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhcc---ccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 216 NEMLLQELEVVREQLENLHKQHEESEVKS---KTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEH 292 (439)
Q Consensus 216 ~~~l~qEL~~~r~~le~L~k~~~ElEaks---kad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~ 292 (439)
.+.|..|++.++.....|.++.-++..+. ++.++-+-.++..++....+.+.+++..+.+...-...|..+| .+.
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r--~~l 169 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK--EDL 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 44444455444444444444444333332 3345555666677777777777777776666554444444333 233
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 039269 293 ADIANLKLLHECEILRNR 310 (439)
Q Consensus 293 ~~~ar~KllhEc~iLr~R 310 (439)
+..--..+|..-.-+|.+
T Consensus 170 ~~~i~~~lL~~Yerir~~ 187 (256)
T 3na7_A 170 VEKTEPKIYSFYERIRRW 187 (256)
T ss_dssp HHTSCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHh
Confidence 333344555555555543
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.59 E-value=0.93 Score=42.21 Aligned_cols=153 Identities=13% Similarity=0.148 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHH--HHHhhhhhhhhhccHH
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQA--VLNEKERFTQMQWDME 182 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQA--vl~EREr~tqmQWdme 182 (439)
.+...+.++...+.........+-.++...-+--+-+...++.+|.+++..+.+-+..=+|- |-..|| +..|+=+++
T Consensus 22 ~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE-~~aL~kEie 100 (256)
T 3na7_A 22 SLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE-LRSLNIEED 100 (256)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH-HHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHH
Confidence 34444555666666666666666666666666667778888888888888777665544332 212222 233333444
Q ss_pred HHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhh
Q 039269 183 ELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 183 Elr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq 262 (439)
-+......+|..+.. +..+.+.+..+++.+...+..+..++.+..+...+.+.-+-+|+..|+..-
T Consensus 101 ~~~~~i~~lE~eile--------------~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 101 IAKERSNQANREIEN--------------LQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333333333 355566666666666666666666666666665555555556666665555
Q ss_pred HHHHHHHHHH
Q 039269 263 SEVKQELSRL 272 (439)
Q Consensus 263 ~elkqEl~~~ 272 (439)
.++...+..-
T Consensus 167 ~~l~~~i~~~ 176 (256)
T 3na7_A 167 EDLVEKTEPK 176 (256)
T ss_dssp HHHHHTSCHH
T ss_pred HHHHhcCCHH
Confidence 5555444433
No 10
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.49 E-value=1.2 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
+-.+|++|.....++++++....+++..+|.-.++-+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~ 1018 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK 1018 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555544443
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.13 E-value=6.5 Score=49.01 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHA 293 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~ 293 (439)
..-.+++.|-.....|+.+.+.++.||..++.=+..=..|.++|
T Consensus 2032 ~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA 2075 (3245)
T 3vkg_A 2032 EIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666666655544444444433
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.72 E-value=1.8 Score=43.29 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
.+....+++...++.++.+++++.+.++..++|.+.+..++.+ +.|+.....+++++++.+..
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~----~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 518 QAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQ----AELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3344567777888888888888888888888888777666544 34455566666666665543
No 13
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.19 E-value=2.4 Score=39.32 Aligned_cols=168 Identities=19% Similarity=0.254 Sum_probs=91.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 100 SDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 100 ~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
.++-.-.+-...-+++++..+++...+.. .-=+.||.|||+.-..+.....+. +.+..++.-
T Consensus 9 ~ee~~ywk~~~~~~~q~~~~le~El~EFq--------------esSrELE~ELE~eL~~~Ek~~~~L----~~~~~~L~~ 70 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSFQEARDELVEFQ--------------EGSRELEAELEAQLVQAEQRNRDL----QADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 34444444555556666666655554432 234677888777666555444432 556777777
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLR 259 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR 259 (439)
+.+.+|.|+...-.. .......|..|+..+++..+.|++..-++|.+- --|=+-.+...
T Consensus 71 E~e~~k~K~~~~~~e-----------------~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N----DdlEr~~R~~~ 129 (189)
T 2v71_A 71 EVEALKEKLEHQYAQ-----------------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN----DDLERAKRATI 129 (189)
T ss_dssp HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHH
Confidence 788888776432211 112234455555555555555555555555432 23445566788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039269 260 SSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNR 310 (439)
Q Consensus 260 ~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~R 310 (439)
.|...+..-+++++...+=||.=|. || +.-...--.|..|++-|+.-
T Consensus 130 ~SleD~e~kln~aiEr~alLE~El~-EK---e~l~~~~QRLkdE~rDLk~E 176 (189)
T 2v71_A 130 MSLEDFEQRLNQAIERNAFLESELD-EK---ESLLVSVQRLKDEARDLRQE 176 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHCCC-------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887776665 23 23344444455555555543
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.61 E-value=1.2 Score=35.34 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=66.6
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
+.+|.+|+-+.|..-.++.+.+.+++.........+....+....+..+..+|+.+.+.+...+..+++.+-.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999999999988877644
No 15
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=90.70 E-value=2.1 Score=38.92 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHh-hHHHH--HHHHHHhhhhhhHHHHHHhhHh-------hHHHHHHHHHHhhhhh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARL-NQEVA--VRQFLTTKVKDLEVELETTSEN-------CKENMQQAVLNEKERF 174 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRL-nQE~A--Vk~fL~tKVkDLEveLettkqk-------~ke~lqQAvl~EREr~ 174 (439)
-+-.|...+-..+.+++..+.++..-| ++.++ +...++..+++|..-.++.+.+ -+..+++.+=.=|+
T Consensus 25 ~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~P~~~e~~~~l~~~~e~lr~-- 102 (191)
T 1nfn_A 25 RWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQA-- 102 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH--
Confidence 466777888889999999999998877 22221 2223444444444333333322 23333333322233
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~ 198 (439)
.|+||||+||.++.-|=..|+..
T Consensus 103 -~l~kdlEelr~kL~P~~eEL~~~ 125 (191)
T 1nfn_A 103 -RLGADMEDVCGRLVQYRGEVQAM 125 (191)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhhHHHHHHHHH
Confidence 46899999999998887766544
No 16
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.61 E-value=23 Score=44.37 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=44.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVK---SKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKE 286 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak---skad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~E 286 (439)
+....+...+.++|+.+++++...+.+..++|++ -+++....++|...|...-...++-|.++-+ |=.-|.-|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~----Li~gL~~E 2085 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIA----LLDNLNSE 2085 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhhc
Confidence 3344566667777777777777777777666653 2233333344443333333333333332221 22335667
Q ss_pred HHHHHHH----HHHHHHHHhHH
Q 039269 287 KQRMEHA----DIANLKLLHEC 304 (439)
Q Consensus 287 kq~~e~~----~~ar~KllhEc 304 (439)
|.|=+.. ......|.-+|
T Consensus 2086 k~RW~~~~~~l~~~~~~L~GD~ 2107 (3245)
T 3vkg_A 2086 RGRWEQQSENFNTQMSTVVGDV 2107 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHH
Confidence 7663332 22334555555
No 17
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.32 E-value=1.7 Score=42.79 Aligned_cols=66 Identities=11% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 222 ELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
.+....++.|.+.++.+....+.+.+.|....|++.||.....+++++..+..+-.+....++.=.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (487)
T 3oja_A 411 LLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV 476 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence 345556666666666666666678888889999999999888899988888887777766665444
No 18
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=87.32 E-value=12 Score=35.76 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=15.7
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhh
Q 039269 174 FTQMQWDMEELRKQLLETELKLKY 197 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks 197 (439)
-+.++|+||+||.++.-|=..|+.
T Consensus 61 ~~~~~~~~eelr~kL~p~~~el~~ 84 (273)
T 3s84_A 61 RTQVNTQAEQLRRQLTPYAQRMER 84 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356777788887777766554443
No 19
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.39 E-value=14 Score=31.35 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRS 260 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~ 260 (439)
|..+..++..++.+|......+.-.+....++.+++..|..+|.+-+..+.+....+..+
T Consensus 15 ~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L-------------------- 74 (129)
T 2fxo_A 15 MASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQL-------------------- 74 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------------
Confidence 334455555666666555555555555566666666666666555544443333322221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
..-|.+|..- ..+++.-|..+.++...-....+|+-.+|.-|...|.+-
T Consensus 75 --~~~k~eLe~~---l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 75 --IKNKIQLEAK---VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp --HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 223344555566666777788889999999999988764
No 20
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=86.04 E-value=5.8 Score=32.83 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=61.8
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
+..|..|+-+.|..-.++-+.|.++|.........+....|....+..+..+|+.+.++|......+++-+
T Consensus 8 KkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~e 78 (101)
T 3u1c_A 8 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888889999999999999999999999999999999999999999999998887777664
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.07 E-value=1.5 Score=46.37 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=57.3
Q ss_pred chhHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccc
Q 039269 247 DVKLLVKEVK-SLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNF 318 (439)
Q Consensus 247 d~KvLvKEVK-sLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~ 318 (439)
|.---+.||= .||+.+..||.+++.-++.+.-|+.+|...+.+..+-..+=.--|+.|+-=|.|-=+..|++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~ 175 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDL 175 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecch
Confidence 3444556666 79999999999999999999999999999998888888877777888876666655555554
No 22
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.94 E-value=22 Score=32.11 Aligned_cols=64 Identities=16% Similarity=0.263 Sum_probs=34.7
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHH
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQEL-EVVREQLENLH 234 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL-~~~r~~le~L~ 234 (439)
|+++.++.=+.......+..+-..|..+..-+.-+|..+..+.+|.+.|---| +.+.+||-.-.
T Consensus 43 r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar 107 (154)
T 2ocy_A 43 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADAR 107 (154)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344555555555666666666666666666666666665444 34455554433
No 23
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.43 E-value=14 Score=33.45 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=63.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
...++.-.-.|-.+|-++|++++...-....+|. +|.....+..+++..-.++..+-.-|.+|+.
T Consensus 8 LI~Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~---------------~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~ 72 (154)
T 2ocy_A 8 LIESVDKQSHLEEQLNKSLKTIASQKAAIENYNQ---------------LKEDYNTLKRELSDRDDEVKRLREDIAKENE 72 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH---------------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3444555556788888888888887776666663 3334444556666777777778888889998
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHh
Q 039269 289 RMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 289 ~~e~~~~ar~KllhEc~iLr~RL 311 (439)
++..+...+.++=+|+.-|-.-|
T Consensus 73 ~R~~aE~~~~~ie~ElEeLTasL 95 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVEDLTASL 95 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888776544
No 24
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.51 E-value=6.3 Score=32.35 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=60.4
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
+..|..|+-+.|..-.+....|.++|...+.....+....+....+..+..+++.+...+...+..+++-+
T Consensus 8 KkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777778888999999999999999999999999999999999999999999998887776654
No 25
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=83.42 E-value=27 Score=31.99 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=13.0
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhh
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDE 201 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qde 201 (439)
+++++ |-+++.|+-.+|+.+.+.
T Consensus 6 eKi~~-------LekQL~E~n~kLk~EsE~ 28 (168)
T 3o0z_A 6 EKLSQ-------LQKQLEEANDLLRTESDT 28 (168)
T ss_dssp ----C-------THHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHHHHhHHH
Confidence 56777 566777777777777543
No 26
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=83.00 E-value=22 Score=30.52 Aligned_cols=164 Identities=10% Similarity=0.054 Sum_probs=106.3
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEV 255 (439)
++.|+++++-.=+.+++..|.+.. -+.--.+.+....+...+..|++.....|+.+......|=...-..
T Consensus 4 ~F~~~~~~l~~Wl~~~~~~l~~~~--~~~dl~~v~~ll~~h~~~~~ei~~~~~~~~~~~~~g~~L~~~~~~~-------- 73 (214)
T 1s35_A 4 AFLQDLDDFQAWLSITQKAVASED--MPESLPEAEQLLQQHAGIKDEIDGHQDSYQRVKESGEKVIQGQTDP-------- 73 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCC--CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSH--------
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCc--------
Confidence 356788888888888888887643 2233344556667778888888888888888877666554432110
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcc
Q 039269 256 KSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSD 335 (439)
Q Consensus 256 KsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sD 335 (439)
.-..+++-+......+..|......=+++-+.+.. ...|.++|.-+-+-|.+.-.-+...+=| .++..
T Consensus 74 -----~~~~i~~~l~~L~~~w~~L~~~~~~r~~~L~~~l~-l~~F~~~~~~~~~Wl~~~E~~l~~~~~g------~~~~~ 141 (214)
T 1s35_A 74 -----EYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAEAILSNQEYTLAHLEPP------DSLEA 141 (214)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCC------SSHHH
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccCC------CCHHH
Confidence 12456666677777777777777666666665554 5679999999988888775443321111 12333
Q ss_pred hhhh----------hhccchhHHHHHHHHhhhhhhh
Q 039269 336 AVDL----------LTTSDNRIGLLVAETQLLAQDI 361 (439)
Q Consensus 336 AldL----------LaTSDnRI~lLlAEaQlL~~d~ 361 (439)
+-.| |.....+|.-|.+.++-|+..+
T Consensus 142 v~~llkkh~~f~~~l~~~~~~i~~l~~~a~~L~~~~ 177 (214)
T 1s35_A 142 AEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAEG 177 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 3333 3455678888888888887654
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=82.81 E-value=3.9 Score=35.83 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
|+-.++.++.+++..++....+-........++.-+++.+.+|+..+++.+..|+++...+|
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666663333333344444444444444444444444444444444444
No 28
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=81.79 E-value=23 Score=37.65 Aligned_cols=138 Identities=17% Similarity=0.190 Sum_probs=74.7
Q ss_pred cCCCceeeechhhhhh--HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHH
Q 039269 90 FPRNSLLALPSDQRLK--LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAV 167 (439)
Q Consensus 90 ~~~d~~ivlP~dqR~K--lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAv 167 (439)
.+.|..+-.|.==|-+ |-+.=..+..||...|.-.||+ .+.+ ++.+.-...++..-++.+.|+.
T Consensus 37 aDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdl-sKns-------------Kdseqy~k~~~E~Lr~rq~q~~ 102 (562)
T 3ghg_A 37 SDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEY-QKNN-------------KDSHSLTTNIMEILRGDFSSAN 102 (562)
T ss_dssp CSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHH-------------HHHHHHHHHHHHTTSSHHHHHH
T ss_pred cccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHH-Hhhc-------------hhHHHHHHHHHHHHHHHHHhhh
Confidence 3577788888765421 2222222333333333344444 3333 3333333444444444444554
Q ss_pred HHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHH-----------------HHHH
Q 039269 168 LNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVV-----------------REQL 230 (439)
Q Consensus 168 l~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~-----------------r~~l 230 (439)
.....+.|+ -+|||++.+-++.+|++--.-..-.+........+.+-|.--+++. .+-+
T Consensus 103 -dNdNtynE~---S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY 178 (562)
T 3ghg_A 103 -NRDNTYNRV---SEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDY 178 (562)
T ss_dssp -HHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHH
T ss_pred -ccchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHH
Confidence 334455552 2478999988888888774333344444444445555554444444 6778
Q ss_pred HHHHhhhhhhhhccc
Q 039269 231 ENLHKQHEESEVKSK 245 (439)
Q Consensus 231 e~L~k~~~ElEaksk 245 (439)
+++|||++.+.|+.-
T Consensus 179 ~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 179 EDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888887753
No 29
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=81.68 E-value=13 Score=30.71 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
++-|-+|++.|......|.++|...-+++..+..-|..-+...+.-..--.++.++...++-++-+|
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~ 72 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLEL 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555444444444444444444555555555444443
No 30
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=80.60 E-value=33 Score=31.13 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEV 255 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEV 255 (439)
|++||+.++..=+.++|..|.+ .+-+.-..+......+-+.+..+|++.+..++.|.+....|=.....+
T Consensus 8 qf~~~~~el~~Wl~e~~~~l~~--~~~g~d~~~~~~ll~kh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~-------- 77 (326)
T 3kbt_A 8 QYYLDADEAEAWIGEQELYVIS--DEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASRAQGLLSAGHPE-------- 77 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC--CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT--------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 256 KSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 256 KsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
-..++.-+.+.-..+..|......=+++-+.+- ....|..+|.-+.+=|.+.
T Consensus 78 ------~~~i~~~l~~l~~~w~~L~~~~~~R~~~Le~~l-~l~~f~~~~~~l~~Wl~~~ 129 (326)
T 3kbt_A 78 ------GEQIIRLQGQVDKHYAGLKDVAEERKRKLENMY-HLFQLKRETDDLEQWISEK 129 (326)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
No 31
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=79.55 E-value=25 Score=29.01 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=62.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
+..|-....+|..|.+.+.+..+.+.......|... .-+--||.||..-...+..++..+-....+...-|.....
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~----~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERS----KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777776666665433 2366799999999999999999988877777665555443
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhh
Q 039269 289 RMEHADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 289 ~~e~~~~ar~KllhEc~iLr~RLQ 312 (439)
....+. .++..|..|+|
T Consensus 80 ~~~~aE-------~ev~~L~Rriq 96 (101)
T 3u1c_A 80 NAAKAE-------SEVASLNRRIQ 96 (101)
T ss_dssp HHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHH-------HHHHHHHHHHH
Confidence 333222 24555555555
No 32
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=78.56 E-value=21 Score=30.29 Aligned_cols=30 Identities=7% Similarity=0.176 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKM 210 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~ 210 (439)
+-|+|+..+.++..|.+..+-+...+.+..
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~ 67 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIA 67 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344777777777777766544444444433
No 33
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=76.99 E-value=13 Score=36.20 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARL 131 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRL 131 (439)
-+-.|...+.--+.++++.+.++..-|
T Consensus 33 ~~e~v~~~fwdY~~~~~~~a~~~~eql 59 (307)
T 2l7b_A 33 RWELALGRFWDYLRWVQTLSEQVQEEL 59 (307)
T ss_dssp HHHHHHHHHHHHHHHTCCCSTHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888889999888888655
No 34
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.73 E-value=21 Score=30.38 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhh
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKM 210 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~ 210 (439)
+-|+|+..+.++..|.+..+-+...+.+..
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~ 69 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLE 69 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445888888888777777554444444433
No 35
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=76.42 E-value=16 Score=32.36 Aligned_cols=113 Identities=18% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHH-------
Q 039269 113 MQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELR------- 185 (439)
Q Consensus 113 mq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr------- 185 (439)
|+||+...--|.+..-.||... ++|+..++...+..-+.. ..|+.--+.-=|||.++.|.+.+.+
T Consensus 1 l~Rri~llEeeLer~eerl~~a-------~~kLeeaek~adE~eR~~-k~lE~r~~~deEr~~~lE~qLkeak~~aeead 72 (147)
T 2b9c_A 1 MNRRIQLVEEELDRAQERLATA-------LQKLEEAEKAADESERGM-KVIESRAQKDEEKMEIQEIQLKEAKHIAEDAD 72 (147)
T ss_dssp ----------CCGGGGTTTTHH-------HHHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544544444455443 345555555555544443 3455444444678888777766554
Q ss_pred HHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 186 KQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 186 ~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
+||.+..-+|...+++-.+++.....+-..+..|..+|..+-..+.+|
T Consensus 73 rKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 73 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666666666666666666666666666666666666655555
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.33 E-value=30 Score=29.25 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK-QRMEHADIANL 298 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek-q~~e~~~~ar~ 298 (439)
.++++.+|+++..|..+...++. +++.|..++.-=|....+..+++++.-.|.-+|-..|=.|- .+...++..|.
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~----e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~ 79 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDD----EVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY 79 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555433 33445545544455556666777777777777777766664 34455666667
Q ss_pred HHHhHHHHHHHHhhhh
Q 039269 299 KLLHECEILRNRLQEC 314 (439)
Q Consensus 299 KllhEc~iLr~RLQEC 314 (439)
++=...+-|+.+|.+-
T Consensus 80 ~~e~kn~~L~~qL~d~ 95 (97)
T 2eqb_B 80 AIEILNKRLTEQLREK 95 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7777778888888763
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=74.55 E-value=16 Score=36.71 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl 269 (439)
.....+...+..+++.+|.+-..++|+... +++.+..-|..|+|.|+....++++++
T Consensus 31 ~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 31 LALDREVQELKKRLQEVQTERNQVAKRVPK---APPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSS---SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777777777765 444455556666666555554444443
No 38
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=73.96 E-value=29 Score=35.25 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
.....+...+..+++.+|.+-..++|+...+- +.+.+..-|..|+|.|+....+|++++.
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRR-KKGEPVDELLAKSREIVKRIGELENEVE 93 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666532 2334556666677666666555554443
No 39
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=71.89 E-value=39 Score=27.56 Aligned_cols=93 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQ 288 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq 288 (439)
+..|-....+|..|.+.+.+..+.+..+....+.... -+--||.+|..-...+..++..+-....+...-|.....
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~----~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek 79 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCK----QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEK 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777766666654432 255689999998889999999888777766665555443
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhh
Q 039269 289 RMEHADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 289 ~~e~~~~ar~KllhEc~iLr~RLQ 312 (439)
....+ =.|+..|..|+|
T Consensus 80 ~~~~A-------E~evasLnRriq 96 (101)
T 3u59_A 80 KATDA-------EAEVASLNRRIQ 96 (101)
T ss_dssp HHHHH-------HHHHHHHHHHHH
T ss_pred HHHHH-------HHHHHHHHHHHH
Confidence 33333 346667777766
No 40
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=71.28 E-value=21 Score=28.86 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQ 284 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~ 284 (439)
..|+..+++.++...+...++|.+ ..-|..|.-.|-.+..+...-..++.+.|.++|..|.
T Consensus 20 eeel~~lke~l~k~e~~rkele~~----~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQ----NVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333333333 2233333333333344444444455555555555444
No 41
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=70.42 E-value=76 Score=30.24 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 163 MQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 163 lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
|++.+-.=|+++.. .+|+||.++.-|=..++.. .......+......+- ..+++|+|.+++.. +-
T Consensus 163 l~~~a~~L~~~l~~---~~eeLr~~L~p~ae~lr~~------l~~~~e~l~~~l~~~~---~~~~qq~e~f~~~~---~p 227 (273)
T 3s84_A 163 MKKNAEELKARISA---SAEELRQRLAPLAEDVRGN------LRGNTEGLQKSLAELG---GHLDQQVEEFRRRV---EP 227 (273)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT------SSSCHHHHHHHHHHHH---HHHHHHHHHHHHHH---TT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHH---HHHHHHHHHHHHHh---Hh
Confidence 34444333455444 5677777776665544432 1111222222222222 22355566665443 22
Q ss_pred ccccchhHHHHHHHHHhhhh
Q 039269 243 KSKTDVKLLVKEVKSLRSSQ 262 (439)
Q Consensus 243 kskad~KvLvKEVKsLR~sq 262 (439)
.+.+=.+-|+..|+-||...
T Consensus 228 ~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 228 YGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 23333556677777666554
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=69.41 E-value=59 Score=31.83 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=33.2
Q ss_pred hhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039269 239 ESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 239 ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~i 306 (439)
.+|.+-.++...--........++.++.+++..-........+..++|-++.+...+.-+|+++|...
T Consensus 396 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp SSCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCcHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 34433333333333334444444555555554444444444555555555555555556666666543
No 43
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=68.72 E-value=25 Score=35.28 Aligned_cols=62 Identities=18% Similarity=0.332 Sum_probs=37.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
.......+...+..+++.+|.+-..++|+...+- +++.+..-|..|+|.|+....++++++.
T Consensus 31 ~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 92 (425)
T 2dq3_A 31 KVLELDKRRREIIKRLEALRSERNKLSKEIGKLK-REGKDTTEIQNRVKELKEEIDRLEEELR 92 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGG-SSCSCTTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777777777888777642 2234555556666666655555444443
No 44
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=68.26 E-value=12 Score=29.92 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=37.7
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.+|..+++++..++.-|..++.||+.. ++|. .+.|..|++ ||.|++|-+
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~q----l~EY--q~LlniKl~-Le~EIatYR 53 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQ----LDEY--QELLDIKLA-LDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-HHHHHHHHH
Confidence 368889999999999999999998653 3333 566777775 778887765
No 45
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=67.75 E-value=63 Score=29.88 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhchHHHHHHh
Q 039269 108 RVLNNMQQRLTAAKADTEDLLARL 131 (439)
Q Consensus 108 Rvl~Tmq~Rl~taKTDmEDLiaRL 131 (439)
.|-.++.--+.+++....|.+.-+
T Consensus 10 ~v~~~~~~Y~~q~~~sa~~~~~~~ 33 (243)
T 2a01_A 10 RVKDLATVYVDVLKDSGRDYVSQF 33 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344455555555555555444333
No 46
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=67.61 E-value=22 Score=31.87 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=46.6
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cccchhHHHHHHHHHhhhhHHHH
Q 039269 200 DERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK-SKTDVKLLVKEVKSLRSSQSEVK 266 (439)
Q Consensus 200 dek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak-skad~KvLvKEVKsLR~sq~elk 266 (439)
.++++.+..+.....+.+.|+...|.+++.+|.|.+.---==++ +...++.+.|++..++.....|+
T Consensus 7 ~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~ 74 (141)
T 3okq_A 7 SNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQ 74 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999998754322222 12234455555555555554443
No 47
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=67.52 E-value=19 Score=37.35 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~ 271 (439)
..+...++.+++.+|.+...++|+...+ .+++.+..-|..|+|.|+....+|++++.+
T Consensus 39 d~~~r~~~~~~~~l~~~rn~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~ 96 (485)
T 3qne_A 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAE 96 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566655554 233445566777777776665555554443
No 48
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=67.12 E-value=24 Score=29.11 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=33.1
Q ss_pred hccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 178 QWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 178 QWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
+||-|.|-+..-++=.++-..++++.+-|-..-++-.|.-.|.+.|......++.|+.+
T Consensus 18 ~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 18 QRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35555555555555555555555666655555555666666666666555555555543
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.92 E-value=57 Score=27.51 Aligned_cols=68 Identities=21% Similarity=0.313 Sum_probs=37.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
.........+.|.-||+..+.+-.+|.....+.|..--.+++-+-.-|-.|-.....++.+..+.+.+
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~E 104 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLRE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444555566666677777776777666666666555444444444444444444444444444433
No 50
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=66.78 E-value=48 Score=29.34 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=16.3
Q ss_pred hhhccHHHHHHHHHHHHHhhhhH
Q 039269 176 QMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~ 198 (439)
.+++|||++|.++.-|=..++..
T Consensus 86 ~l~kdlee~r~~l~P~~~e~~~~ 108 (185)
T 3r2p_A 86 EMSKDLEEVKAKVQPYLDDFQKK 108 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHH
Confidence 36778999888887765555544
No 51
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=66.43 E-value=60 Score=27.52 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=36.3
Q ss_pred HHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 163 MQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 163 lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L 233 (439)
|+..+-.|++-+.-..=-++-|-.+-.++|.+|+..+..-...+........++.-+.+++..++++++.+
T Consensus 53 L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 53 LQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445554443333333344555666666666655544455555555555555555555555555544
No 52
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.99 E-value=23 Score=29.91 Aligned_cols=61 Identities=26% Similarity=0.222 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRL 311 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RL 311 (439)
|.++.-+||-....|+.+++..-.++..+-.-|.+|+.++..+...+.++=+|+.-|-.-|
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888888888888888999999999999999999999999988876554
No 53
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.36 E-value=87 Score=29.02 Aligned_cols=90 Identities=21% Similarity=0.319 Sum_probs=45.9
Q ss_pred hhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHH
Q 039269 173 RFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLV 252 (439)
Q Consensus 173 r~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLv 252 (439)
++.+|+=.++|+..-+.++|..|... =...+....-....+..|..|++..|..++..+. .+-..+-.|=
T Consensus 25 ~~~~le~El~EFqesSrELE~ELE~e---L~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~-------e~~~~~~~Lq 94 (189)
T 2v71_A 25 SFQEARDELVEFQEGSRELEAELEAQ---LVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA-------QSYKQVSVLE 94 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34445555555666666666554333 1122222233344445555555555555544444 3344566677
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q 039269 253 KEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 253 KEVKsLR~sq~elkqEl~~~ 272 (439)
+|+-.||.....|++-+-..
T Consensus 95 ~el~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777776666655554433
No 54
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.89 E-value=9.9 Score=28.07 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=29.8
Q ss_pred HHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHH
Q 039269 188 LLETELKLKYEQDERARAESSKMSIIQENEMLLQEL 223 (439)
Q Consensus 188 ~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL 223 (439)
..++|.+.|..+.-.+-.|+...++..||.||+|=|
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 346778888888888888888899999999999854
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.70 E-value=41 Score=27.59 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 162 NMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 162 ~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
..||||= .|+-+|-.++||+.|........... .+......+||+.|.+|....++.+..|--..
T Consensus 14 KIq~avd----tI~lLqmEieELKekN~~L~~e~~e~-------~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 14 KVQQAID----TITLLQMEIEELKEKNNSLSQEVQNA-------QHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566664 37888888888887776655444433 23334457777788888777777776665443
No 56
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=63.22 E-value=46 Score=34.45 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=39.3
Q ss_pred hhccHHHHHHHHHHHHHhhhhHHhhh-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-------ccch
Q 039269 177 MQWDMEELRKQLLETELKLKYEQDER-ARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKS-------KTDV 248 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~Lks~qdek-~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEaks-------kad~ 248 (439)
|--|+.-+|.....+..+|+...-.. ...-........+...+..+++.++.+-..++|+...+-++. ..+.
T Consensus 39 pmlD~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~ 118 (501)
T 1wle_A 39 PLLDMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQY 118 (501)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHH
T ss_pred CccCHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccH
Confidence 34455555554444444444332110 000112233344445555555555555555555555432211 1233
Q ss_pred hHHHHHHHHHhhhhHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqE 268 (439)
.-|..|+|.|+....+|+++
T Consensus 119 ~~l~~~~~~l~~~i~~l~~~ 138 (501)
T 1wle_A 119 QSLRARGREIRKQLTLLYPK 138 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444333
No 57
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.77 E-value=61 Score=27.91 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRM 290 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~ 290 (439)
.-....++|..|++.++..++.+..+.- +.|-.|+....+|+.||.+....
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q--------------~~v~ql~~~i~~Le~eL~e~r~~--------------- 62 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQ--------------RVVLQLKGHVSELEADLAEQQHL--------------- 62 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 3356678888888888888888854432 45777888888888888776543
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhh
Q 039269 291 EHADIANLKLLHECEILRNRLQEC 314 (439)
Q Consensus 291 e~~~~ar~KllhEc~iLr~RLQEC 314 (439)
+.+.+-||.-|+..+.+|
T Consensus 63 ------~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 63 ------RQQAADDCEFLRAELDEL 80 (120)
T ss_dssp ------HHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 334556777777776665
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.53 E-value=8.6 Score=28.95 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
...+.+.|++|++.+|..++.|.+++.|+.++
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888765
No 59
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=61.35 E-value=1.3e+02 Score=31.61 Aligned_cols=158 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHH
Q 039269 141 LTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLL 220 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~ 220 (439)
+......|+.-...-.......+.+---.| +.+.+++|+++++-.-+.++|..|.+ .+-....-...+....+-+.+.
T Consensus 340 i~~~w~~L~~~~~~r~~~l~~~~~R~~~Le-~l~~~F~~~~~~~~~Wl~~~e~~l~~-~~~g~~dl~~v~~ll~kh~~f~ 417 (863)
T 1sjj_A 340 INNAWGGLEQAEKGYEEWLLNEIRRLERLD-HLAEKFRQKASIHESWTDGKEAMLQQ-KDYETATLSEIKALLKKHEAFE 417 (863)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHEEHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhc-ccccCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 039269 221 QELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANL-- 298 (439)
Q Consensus 221 qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~-- 298 (439)
.+|.+....++.+.....+|-...-.+. .++.+-+......|..|...+..-+++-+.+.....
T Consensus 418 ~el~~~~~~v~~l~~~~~~L~~~~~~~~--------------~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~ 483 (863)
T 1sjj_A 418 SDLAAHQDRVEQIAAIAQELNELDYYDS--------------PSVNARCQKICDQWDNLGALTQKRREALERTEKLLETI 483 (863)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHTCCTTH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHhHHHHHHHHhhhh
Q 039269 299 -----KLLHECEILRNRLQEC 314 (439)
Q Consensus 299 -----KllhEc~iLr~RLQEC 314 (439)
.|.++|..+.+-|+++
T Consensus 484 ~~l~~~f~~~a~~~~~Wl~~~ 504 (863)
T 1sjj_A 484 DQLYLEYAKRAAPFNNWMEGA 504 (863)
T ss_dssp HHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 60
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.81 E-value=77 Score=26.86 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=36.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKE 275 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~e 275 (439)
..........+.|.-||+..+.+-.+|.....+.|..--.+++-+-.-|-.|-.....++.+..+.+.+
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~E 106 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQE 106 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666777777777777766666666554444444334444444444444444444433
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.73 E-value=26 Score=28.90 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQ 267 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkq 267 (439)
++=++.+.+||..+|...-+++.++.+.|++. +-|.-|++.||....+|+.
T Consensus 23 IqAKQ~i~EELs~vr~~ni~~eskL~eae~rn----~eL~~e~~~l~~~~eelq~ 73 (81)
T 1wt6_A 23 VLTRQSLSREMEAIRTDNQNFASQLREAEARN----RDLEAHVRQLQERMELLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHc
Confidence 77778888888888888888887777666554 3456666666665555443
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.18 E-value=61 Score=25.49 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEK 287 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ek 287 (439)
|-....+|..|.+.+.+.++.+.....+.+... .-+--||.+|-.-...|..++..+-....+...-|....
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~----~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERS----KQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777776666432 334578888988888899999888877777666665544
No 63
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=56.80 E-value=99 Score=32.88 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=67.3
Q ss_pred ccCCCCcccCCCceeeec--hhhhhhHHHHHH----HHHHHHH-----HhhhchHHHHHHhhHHHHHHHHHHhhhhhhHH
Q 039269 82 AHISSDALFPRNSLLALP--SDQRLKLNRVLN----NMQQRLT-----AAKADTEDLLARLNQEVAVRQFLTTKVKDLEV 150 (439)
Q Consensus 82 ~~~~~d~q~~~d~~ivlP--~dqR~KlnRvl~----Tmq~Rl~-----taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEv 150 (439)
++.+-+..|-|-..|.-. -|-|..||-+|. ...+.+. -+-.|+|++-++-|-|||--+-|...
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~~Kki~naevae~~~lrQR------ 357 (602)
T 1cii_A 284 IVVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIYNAEVAEWDKLRQR------ 357 (602)
T ss_dssp EECCSCTTTCSEEEEEEEEEECCHHHHHHHHTSCHHHHHHHTSCCCCSCCSSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred eEecCCCccceeEEEehhhhhccccchhHHhhccchhhhhhhhcCCCCcchhhhhhHHHHHhhhhhhHHHHHHH------
Confidence 344445556565555433 488999998873 2344443 35579999999999999866555411
Q ss_pred HHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 039269 151 ELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQL 230 (439)
Q Consensus 151 eLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~l 230 (439)
+++-|.++-..|..+++.++-.+..-...+.+....+.+++|-..++.++
T Consensus 358 ------------------------------lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 358 ------------------------------LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666666666666555555444444444444444444444444
No 64
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.11 E-value=40 Score=29.07 Aligned_cols=91 Identities=25% Similarity=0.373 Sum_probs=42.2
Q ss_pred hhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHH
Q 039269 120 AKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQ 199 (439)
Q Consensus 120 aKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~q 199 (439)
.+.+.+.+|.+|..|+ .+|=.+|+..+.-+ | -++++ |+.++.++|..|-..
T Consensus 9 ~~d~rD~~Ie~Lkrei----------e~lk~ele~l~~E~----q-------~~v~q-------l~~~i~~Le~eL~e~- 59 (120)
T 3i00_A 9 NKDEKDHLIERLYREI----------SGLKAQLENMKTES----Q-------RVVLQ-------LKGHVSELEADLAEQ- 59 (120)
T ss_dssp -CCTHHHHHHHHHHHH----------HHHHHHHHHHHHHH----H-------HHHHH-------HHHHHHHHHHHHHHH-
T ss_pred CCCcHHHHHHHHHHHH----------HHHHHHHHHHHHHH----H-------HHHHH-------HHHHHHHHHHHHHHH-
Confidence 4566777888877765 44556666664433 2 23344 444444454444433
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhccc
Q 039269 200 DERARAESSKMSIIQENEMLLQELEVVRE---QLENLHKQHEESEVKSK 245 (439)
Q Consensus 200 dek~~~e~~~~s~~~e~~~l~qEL~~~r~---~le~L~k~~~ElEaksk 245 (439)
...++.+..||+.|+.|++.++. .-+.+++.+.|.|-|++
T Consensus 60 ------r~~~q~a~~e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAq 102 (120)
T 3i00_A 60 ------QHLRQQAADDCEFLRAELDELRRQREDTEKAQRSLSEIERKAQ 102 (120)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHTTCC-----------------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 12255567778888888877633 23344666777777775
No 65
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=55.79 E-value=97 Score=26.44 Aligned_cols=125 Identities=13% Similarity=0.199 Sum_probs=79.5
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVK 253 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvK 253 (439)
.-+++++++++..=+.++|..|.+.. -+.--.+......+-..+..++.+.+..++.+.....+|-...-.+.
T Consensus 5 ~~~F~~~~~~l~~Wl~~~e~~l~~~~--~g~dl~~v~~ll~kh~~le~~i~~~~~~v~~l~~~~~~L~~~~~~~~----- 77 (216)
T 1u5p_A 5 QQNFNTGIKDFDFWLSEVEALLASED--YGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMTSSAFDT----- 77 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCC--CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-----
Confidence 45678889999999999999998752 22223344445666777888888888888888877777754433332
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECS 315 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn 315 (439)
.+++..+......+..|......=+.+-+.+.. ..+|.++|.-+-.-|.+.-
T Consensus 78 ---------~~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~-l~qf~~~~~~~~~Wl~e~e 129 (216)
T 1u5p_A 78 ---------SQVKDKRETINGRFQRIKSMAAARRAKLNESHR-LHQFFRDMDDEESWIKEKK 129 (216)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Confidence 223333344444444555444444444444433 4568899999888888864
No 66
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.29 E-value=21 Score=33.36 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKS 244 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEaks 244 (439)
-.++..+||..|.++|++..+.++.|+++...+++++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455678888888888888777777777777776666
No 67
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=55.12 E-value=1e+02 Score=26.65 Aligned_cols=164 Identities=14% Similarity=0.168 Sum_probs=93.3
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKE 254 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKE 254 (439)
.++.+++.+|-.-+.+++..|.+. +-+.--+..+....+-+.+..||++....++.+......|=.....
T Consensus 16 ~~F~~~~~~l~~Wl~~~~~~l~~~--e~~~d~~~ve~ll~~H~~l~~ei~~~~~~~~~~~~~G~~Ll~~~~~-------- 85 (218)
T 3fb2_A 16 QRFLSDFRDLMSWINGIRGLVSSD--ELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLAHGHY-------- 85 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC--CCCSSSHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTTCT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC--CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC--------
Confidence 455678888888888888888653 2222223344455566677777777777777776655554332221
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCc
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPS 334 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~s 334 (439)
.-.+++.-+.+.-..+..+......=+.+-+.+.. ...|..+|.-+..=|.++-.-+... + + +.++.
T Consensus 86 ------~~~~i~~~l~~L~~~w~~L~~~~~~R~~~L~q~l~-l~~F~~d~~~~~~WL~~~e~~L~~~--~-~---g~s~~ 152 (218)
T 3fb2_A 86 ------ASPEIKQKLDILDQERADLEKAWVQRRMMLDQCLE-LQLFHRDCEQAENWMAAREAFLNTE--D-K---GDSLD 152 (218)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCC----------------
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCC--C-C---CCCHH
Confidence 12345555666666666666666655555555543 4688888888888888775543321 1 1 11233
Q ss_pred chhhh----------hhccchhHHHHHHHHhhhhhhh
Q 039269 335 DAVDL----------LTTSDNRIGLLVAETQLLAQDI 361 (439)
Q Consensus 335 DAldL----------LaTSDnRI~lLlAEaQlL~~d~ 361 (439)
++-.+ |..-..+|.-|...++-|...+
T Consensus 153 ~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~~~ 189 (218)
T 3fb2_A 153 SVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAAG 189 (218)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 33333 3344567777777777776544
No 68
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=54.96 E-value=59 Score=25.89 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccc-cch-hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSK-TDV-KLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGV 282 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEaksk-ad~-KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~ 282 (439)
..||+.+-..++.|..+..+|+++-- .++ .-=...+..|-..+.+++++|...+..|.+|+.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666665531 111 0002456677788899999999999999998764
No 69
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=54.80 E-value=1e+02 Score=26.44 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=40.5
Q ss_pred HHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhH--------------HhhhHhhh
Q 039269 141 LTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYE--------------QDERARAE 206 (439)
Q Consensus 141 L~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~--------------qdek~~~e 206 (439)
|..|+.-|..|++.-|.|.+..-..+--. ++.||=++..||.....|=..|-.. .-.=...+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~----~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQ----VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 55667777777777777666554333222 3334444444443333332222222 12222334
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 039269 207 SSKMSIIQENEMLLQELEV 225 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~ 225 (439)
+....++..|-+|..||+.
T Consensus 84 ~k~n~aiErnalLE~El~E 102 (111)
T 2v66_B 84 QRLNQAIERNAFLESELDE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566667777777763
No 70
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=54.67 E-value=1.1e+02 Score=26.56 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhH
Q 039269 184 LRKQLLETELKLKYE 198 (439)
Q Consensus 184 lr~k~~e~E~~Lks~ 198 (439)
|+++..=|..--..+
T Consensus 67 LkaQv~IY~~DF~aE 81 (110)
T 2v4h_A 67 LKAQADIYKADFQAE 81 (110)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc
Confidence 777776666666666
No 71
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=53.38 E-value=1.7e+02 Score=28.49 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=23.6
Q ss_pred hhHHHHHHhhHhhHHHHHHHHH--HhhhhhhhhhccHHHHHHHHHHHHHhhhhH
Q 039269 147 DLEVELETTSENCKENMQQAVL--NEKERFTQMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 147 DLEveLettkqk~ke~lqQAvl--~EREr~tqmQWdmeElr~k~~e~E~~Lks~ 198 (439)
+.+.-|+....+..+.+.+..- .-|...+-||=.+++++......|..-.+|
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATA 423 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhc
Confidence 5555555555555555544321 123334444444444444444444444333
No 72
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=52.12 E-value=1.1e+02 Score=25.91 Aligned_cols=135 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVK 253 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvK 253 (439)
+-++.|+++++-.=+.+.|..+.+ .+-+..-........+...+..||......++.+......|-...-.+..
T Consensus 2 l~qf~~~~~~~~~Wl~e~e~~l~~--~~~g~dl~~v~~ll~kh~~~~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~---- 75 (213)
T 1cun_A 2 VHQFFRDMDDEESWIKEKKLLVSS--EDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLDTGKKLSDDNTIGKE---- 75 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH----
T ss_pred hHHHHHHHHHHHhHHHHHHHHhcC--cccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcHH----
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccc
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDK 325 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~ 325 (439)
.+.+-++.....+..|......-+.+-+.+... ..|..+|.-+..-|.+...-+...+-|.
T Consensus 76 ----------~i~~~~~~l~~~w~~L~~~~~~R~~~Le~~~~~-~~f~~~~~e~~~Wl~~~e~~l~~~~~g~ 136 (213)
T 1cun_A 76 ----------EIQQRLAQFVDHWKELKQLAAARGQRLEESLEY-QQFVANVEEEEAWINEKMTLVASEDYGD 136 (213)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCCCS
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCCC
No 73
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=51.84 E-value=1.2e+02 Score=26.30 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHH-HHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHH
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQE-VAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEEL 184 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE-~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeEl 184 (439)
+..-|..-+.++..+...-+.|++.-+.. ..|++.| ..+.+....|...-..-+..|+|+.- +-++..|++++
T Consensus 58 l~~ei~~~~~~~~~~~~~G~~Ll~~~~~~~~~i~~~l-~~L~~~w~~L~~~~~~R~~~L~q~l~-----l~~F~~d~~~~ 131 (218)
T 3fb2_A 58 HRTEIDARAGTFQAFEQFGQQLLAHGHYASPEIKQKL-DILDQERADLEKAWVQRRMMLDQCLE-----LQLFHRDCEQA 131 (218)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHTTCTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Confidence 33333333345555555555565543321 1233222 23444445555555555666777652 33455677777
Q ss_pred HHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 185 RKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 185 r~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
..=+.+.|..|.+. +-+..-...+....+-+.+..+|.+..+.+..|...-..|=.
T Consensus 132 ~~WL~~~e~~L~~~--~~g~s~~~ve~ll~~h~~f~~~l~~~~~~v~~l~~~~~~L~~ 187 (218)
T 3fb2_A 132 ENWMAAREAFLNTE--DKGDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIA 187 (218)
T ss_dssp HHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 77777777777664 233334455566667777777777777777777665555543
No 74
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=50.54 E-value=97 Score=24.89 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 181 MEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 181 meElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
|..+..++..+..++......+.-.+....+..+++..|..++..+.+..+.|.+...++|.+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555555555555555555555555555555555543
No 75
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.47 E-value=37 Score=30.17 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHH-HHHHHHHHH
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQEL-EVVREQLEN 232 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL-~~~r~~le~ 232 (439)
....+..+-..|..+..-+.-+|..+..+.+|.+.|---| +.+.+||-.
T Consensus 44 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ 93 (135)
T 2e7s_A 44 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVAD 93 (135)
T ss_dssp HHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555556666666666666665555443 334455443
No 76
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=50.12 E-value=41 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.237 Sum_probs=17.5
Q ss_pred HHHHHhhhhhhhhhccHHHHHHHH
Q 039269 165 QAVLNEKERFTQMQWDMEELRKQL 188 (439)
Q Consensus 165 QAvl~EREr~tqmQWdmeElr~k~ 188 (439)
.+...||.|...|..-+++||.-.
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lv 28 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSV 28 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHC
Confidence 356789999988777777776544
No 77
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=49.20 E-value=91 Score=25.57 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=40.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHH
Q 039269 209 KMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLM 273 (439)
Q Consensus 209 ~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~ 273 (439)
.+.++....-|.+|++.++++-..|.++..++ ++.+..|..|..-|+..|..-+.-+...+
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~----~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNA----QHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446667777788888888888887777664 34556677777777766665555554443
No 78
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=49.14 E-value=1e+02 Score=27.36 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 215 ENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHAD 294 (439)
Q Consensus 215 e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~ 294 (439)
+-+.+.++++..-..|+... +.|..|++.=+.=..-|..=...+-....+.+..+.+-|++..+..
T Consensus 69 ~~e~l~~~veeA~~~L~eYn--------------~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~ 134 (152)
T 4fla_A 69 AAERLSKTVDEACLLLAEYN--------------GRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVT 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555443 3455566654433334444444444556667777777776666666
Q ss_pred HHHHHH
Q 039269 295 IANLKL 300 (439)
Q Consensus 295 ~ar~Kl 300 (439)
..+++|
T Consensus 135 ~vkkeL 140 (152)
T 4fla_A 135 QVRKEL 140 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 79
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=49.10 E-value=67 Score=28.01 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhHHHHHHH
Q 039269 252 VKEVKSLRSSQSEVKQEL 269 (439)
Q Consensus 252 vKEVKsLR~sq~elkqEl 269 (439)
.+|+..|......|..++
T Consensus 116 ~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 116 KSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 80
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.92 E-value=1.1e+02 Score=25.76 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=15.5
Q ss_pred HHHHHHHHHhHHHHHHHHhh
Q 039269 293 ADIANLKLLHECEILRNRLQ 312 (439)
Q Consensus 293 ~~~ar~KllhEc~iLr~RLQ 312 (439)
++..-.+|..||.-||.|++
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~ 92 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLR 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556678889999999986
No 81
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=48.53 E-value=1.1e+02 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 039269 218 MLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 218 ~l~qEL~~~r~~le~L~k~~~ 238 (439)
++..++..+|.++..+..+..
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a 37 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKA 37 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666655443
No 82
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=48.40 E-value=1.1e+02 Score=25.36 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRLMKEKLEVE 280 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~~~eK~elE 280 (439)
-|+.||+-||---.+|..|..||-+......
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4777777777777777777777766555444
No 83
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=47.11 E-value=2.5e+02 Score=28.59 Aligned_cols=73 Identities=12% Similarity=0.070 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc---cccc-hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVK---SKTD-VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEak---skad-~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
.++.+.+++|+..+...+..|-+.....-.+ ...+ +.+..+-.|.+...+..|+.-+...-.....|+.+|..
T Consensus 40 l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~ 116 (409)
T 1m1j_C 40 LLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIM 116 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 6666777777777666666555544444222 2333 33445666666666666666666555566666666653
No 84
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=45.58 E-value=38 Score=30.85 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=10.6
Q ss_pred hhccHHHHHHHHHHHH
Q 039269 177 MQWDMEELRKQLLETE 192 (439)
Q Consensus 177 mQWdmeElr~k~~e~E 192 (439)
+++||+++|.++.-|=
T Consensus 85 l~kd~ee~r~~l~py~ 100 (216)
T 2lem_A 85 MNKDLEEVKQKVQPYL 100 (216)
T ss_dssp HHHHHHHHHHHTTTTC
T ss_pred HhccHHHHHHhhhHHH
Confidence 6667777777665443
No 85
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.14 E-value=1.1e+02 Score=25.21 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 184 LRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 184 lr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
.|.....++.+|+.. ...|..|+.|+..++++++.|+..
T Consensus 36 vr~~ni~~eskL~ea--------------e~rn~eL~~e~~~l~~~~eelq~~ 74 (81)
T 1wt6_A 36 IRTDNQNFASQLREA--------------EARNRDLEAHVRQLQERMELLQAE 74 (81)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 566666666666655 778888899998888888887643
No 86
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=44.86 E-value=1.2e+02 Score=24.14 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 039269 222 ELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEK 276 (439)
Q Consensus 222 EL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK 276 (439)
||+..+.+-.+|.....++|..-..+++-+-.-|-.|-....+++.+..+.+.+-
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EY 56 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREY 56 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444444444445555555555555444443
No 87
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=44.53 E-value=49 Score=29.40 Aligned_cols=82 Identities=20% Similarity=0.216 Sum_probs=32.6
Q ss_pred HhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhh---hhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhh
Q 039269 130 RLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKER---FTQMQWDMEELRKQLLETELKLKYEQDERARAE 206 (439)
Q Consensus 130 RLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr---~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e 206 (439)
+|+-...-|.-|-.|.+.+|..+-++ |.|+ --+.+.-++-||-+...||..||-++.--
T Consensus 17 kL~~Ae~~k~~Leek~~~~e~~~~~~--------------~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~---- 78 (130)
T 3cl3_D 17 RLEAATKECQALEGRARAASEQARQL--------------ESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAA---- 78 (130)
T ss_dssp ------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44444555555555555555444333 3333 22355667889999999999999984332
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
.+=+.-|+.++--++-|=++|++
T Consensus 79 ----------~eEKrkLAqLQ~AY~~LfqeYd~ 101 (130)
T 3cl3_D 79 ----------SEEKRKLAQLQVAYHQLFQEYDN 101 (130)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345555555556666655
No 88
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=44.00 E-value=2.9e+02 Score=28.61 Aligned_cols=11 Identities=9% Similarity=-0.112 Sum_probs=8.3
Q ss_pred cCCCceeeech
Q 039269 90 FPRNSLLALPS 100 (439)
Q Consensus 90 ~~~d~~ivlP~ 100 (439)
.+.+.....|.
T Consensus 73 ~~~~~G~~CPT 83 (464)
T 1m1j_B 73 PLDELGVLCPT 83 (464)
T ss_dssp SSTTTCEEEEC
T ss_pred cCCCccCcCCC
Confidence 45777888898
No 89
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=43.92 E-value=1.7e+02 Score=25.90 Aligned_cols=137 Identities=11% Similarity=0.136 Sum_probs=83.4
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKE 254 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKE 254 (439)
-++.|+++++-.=+.+.|..|.+. +--+..-..........+.+..+|.+....++.+.....+|-...-.+..-+
T Consensus 17 ~~F~~~~~e~~~Wl~e~e~~l~~~-~~~g~dl~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I--- 92 (250)
T 1quu_A 17 EKFRQKASTHETWAYGKEQILLQK-DYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNV--- 92 (250)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCC-CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHH---
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHH---
Confidence 466777777777777777777762 2214455667777888889999999999999999888888877665553322
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccc
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFL 319 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l 319 (439)
+....+|...-.....--..=..-|...-+..+.-..++..|..+|..+..-|.+--..+.
T Consensus 93 ----~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~ 153 (250)
T 1quu_A 93 ----NDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQ 153 (250)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 1122222221111111111112222233333333445566899999999999988665554
No 90
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=43.87 E-value=1.2e+02 Score=24.47 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 274 KEKLEVEGVLQKEKQRMEHADIANLKLL 301 (439)
Q Consensus 274 ~eK~elE~~L~~Ekq~~e~~~~ar~Kll 301 (439)
..|..+++.|+.|+=...+|.+=.+.+|
T Consensus 39 ~~k~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1uix_A 39 AIKAQFEKQLLTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999977777777666555
No 91
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=43.21 E-value=1.9e+02 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=18.5
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhH
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~ 198 (439)
-..++|.+|++|.++.=|=..|+..
T Consensus 123 ~~~l~~~~Eelr~~L~Py~eelr~k 147 (191)
T 1nfn_A 123 QAMLGQSTEELRVRLASHLRKLRKR 147 (191)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567899999999887766555544
No 92
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.19 E-value=66 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhc
Q 039269 223 LEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 223 L~~~r~~le~L~k~~~ElEak 243 (439)
++.++.+..+|.....++|+.
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~ 25 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDS 25 (86)
T ss_dssp -------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 93
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=43.09 E-value=81 Score=25.41 Aligned_cols=65 Identities=11% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccc
Q 039269 254 EVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNF 318 (439)
Q Consensus 254 EVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~ 318 (439)
|++.||++.-.+..+..+..-+...+...+..=|.|-|...+-|..+=.++..||.=+-++++.-
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r 65 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR 65 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45667777777777777777777766666666666777777777777777777777666666543
No 94
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=43.01 E-value=1.1e+02 Score=24.88 Aligned_cols=15 Identities=47% Similarity=0.492 Sum_probs=6.3
Q ss_pred HHHHHHHhhhhhhHH
Q 039269 136 AVRQFLTTKVKDLEV 150 (439)
Q Consensus 136 AVk~fL~tKVkDLEv 150 (439)
+.++.++.|++++|.
T Consensus 6 ~e~e~~~~klq~~E~ 20 (79)
T 3cvf_A 6 AEREETQQKVQDLET 20 (79)
T ss_dssp ----CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555556555554
No 95
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.94 E-value=92 Score=24.56 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHhhhhHHHHHH
Q 039269 248 VKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqE 268 (439)
++-|-+..+.++....+++..
T Consensus 81 i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444333333
No 96
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=42.77 E-value=51 Score=25.62 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHH
Q 039269 249 KLLVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 249 KvLvKEVKsLR~sq~elkqEl~~~ 272 (439)
|-||-=|=+||-+-++|+||..+.
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m 29 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKM 29 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777777777777777765543
No 97
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=42.22 E-value=50 Score=34.45 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=44.4
Q ss_pred HHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 039269 150 VELETTSENCKENMQQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQ 229 (439)
Q Consensus 150 veLettkqk~ke~lqQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~ 229 (439)
.++..+|...||-=++= -.||+++.--.=-=++.-++..|||..|+..+.+-......+.-...-.+.|-+++..+++.
T Consensus 300 ~e~qqm~~~a~e~~~~~-~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 300 IDVQQMKAQAREEKLAK-QAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566666665543322 23466665533334455566677777777775555444444333333333333333333333
Q ss_pred HHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 039269 230 LENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQE---LSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEI 306 (439)
Q Consensus 230 le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqE---l~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~i 306 (439)
-+.|.+...++| -+...|+.+...-.+| |.+-+.++...-.-|..|.++.+....-+..=+.+.+.
T Consensus 379 ~~~l~~~~~~~e-----------~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 379 KEELEQRQNELQ-----------AMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARR 447 (575)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332222 1222333332222222 22222233333344555666666555555555555555
Q ss_pred HHHHhhhhccccc
Q 039269 307 LRNRLQECSVNFL 319 (439)
Q Consensus 307 Lr~RLQECn~~~l 319 (439)
-...-+++-.++.
T Consensus 448 ~~~~~~~~l~~~~ 460 (575)
T 2i1j_A 448 KQDEAAAALLAAT 460 (575)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544443
No 98
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=41.99 E-value=95 Score=25.31 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=31.4
Q ss_pred hhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 171 KERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 171 REr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
||.|.|.|=+|+-||+--.|+. . ++...+.- ...|.+|-+.+.+.++.|++...|++
T Consensus 17 ~E~~~q~qaEl~sLrrT~~EL~----~---G~~KL~~m-------i~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 17 KEEMDRAQAELNALKRTEEDLK----K---GHQKLEEM-------VTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH----h---hhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888887544432 1 22222222 23344444555555566665555554
No 99
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.98 E-value=58 Score=24.55 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.++..+..++.-|..+|.||+.. ++|. .+.|..|++ ||.|++|-+
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q----~~eY--q~LlniK~~-Le~EIatYR 48 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARL----KKLV--GDLLNVKMA-LDIEIATYR 48 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHH--HHHHHHHHH-hHHHHHHHH
Confidence 35677888899999999998643 3443 567777775 777877655
No 100
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=41.58 E-value=2.4e+02 Score=26.90 Aligned_cols=56 Identities=21% Similarity=0.219 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHhhhhcccccccccccceecCCCCcchhhh
Q 039269 275 EKLEVEGVLQKEKQRMEHADIA-------NLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPSDAVDL 339 (439)
Q Consensus 275 eK~elE~~L~~Ekq~~e~~~~a-------r~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~sDAldL 339 (439)
++.-+.++|-+||.|==.-..- --.+++|...|+.-|+.+.. ++.+|+.+|++.+-
T Consensus 187 ~~~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~---------~~~~p~~LP~~se~ 249 (253)
T 2d1l_A 187 EKQAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLKS---------LTMDPHKLPSSSEQ 249 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHH---------HTSCTTSCCGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHH---------HhcCcccCchHHHH
Confidence 3444556666776443322222 12345555677777666654 55667776666553
No 101
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=41.51 E-value=61 Score=29.23 Aligned_cols=19 Identities=42% Similarity=0.672 Sum_probs=6.7
Q ss_pred hhccHHHHHHHHHHHHHhh
Q 039269 177 MQWDMEELRKQLLETELKL 195 (439)
Q Consensus 177 mQWdmeElr~k~~e~E~~L 195 (439)
|+|+-..|-.++.+.+..|
T Consensus 1 ~~~~~~~le~~~~e~~~~l 19 (146)
T 2xnx_M 1 MVWDRQRLEKELEEKKEAL 19 (146)
T ss_dssp ------CTTHHHHHHHHSC
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 5566555555555554443
No 102
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=41.47 E-value=2.4e+02 Score=26.96 Aligned_cols=74 Identities=9% Similarity=0.103 Sum_probs=49.6
Q ss_pred hhhhhccHHHHHHHHHHHHHhhhhHHhhh-HhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchh
Q 039269 174 FTQMQWDMEELRKQLLETELKLKYEQDER-ARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVK 249 (439)
Q Consensus 174 ~tqmQWdmeElr~k~~e~E~~Lks~qdek-~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~K 249 (439)
+-+++|+++++-.-+.++|..|.+. +- +..-........+.+.+..+|.+....+..+.....+|-.....+..
T Consensus 133 ~~~f~~~~~~~~~Wl~e~e~~l~~~--~~~g~dl~~v~~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~~~~~~ 207 (476)
T 1hci_A 133 AEKFRQKASTHETWAYGKEQILLQK--DYESASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAV 207 (476)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHCC--GGGSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC--CccCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCcCcchh
Confidence 3556777888888888888777652 22 33334555666777788888888888888887777776555444443
No 103
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=41.22 E-value=97 Score=24.44 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 109 VLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 109 vl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.|..++..+.+-|.+.+.++.++.+-..=|+|--.|++|.|.-.....
T Consensus 3 ~m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e 50 (75)
T 3mtu_A 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENE 50 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 356677777788899999999999999999999999999998877653
No 104
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=40.90 E-value=1.1e+02 Score=28.42 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 253 KEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 253 KEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
+|+..|..+..+|.+++.++..+|.+.|.-|
T Consensus 146 ~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L 176 (213)
T 1ik9_A 146 KENERLLRDWNDVQGRFEKAVSAKEALETDL 176 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455577777777888888888888888644
No 105
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.71 E-value=40 Score=24.26 Aligned_cols=31 Identities=29% Similarity=0.456 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
-.+.+||+.|-.++.+..++.-.|.++-++|
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3578999999999999999999998877665
No 106
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=39.08 E-value=2.1e+02 Score=25.58 Aligned_cols=65 Identities=15% Similarity=0.212 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHhhhhHH-hhhHhhhhhhhhhHHHHHHHH--HH-HHHHHHHHHHHHhhhhhhhhcc
Q 039269 180 DMEELRKQLLETELKLKYEQ-DERARAESSKMSIIQENEMLL--QE-LEVVREQLENLHKQHEESEVKS 244 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~q-dek~~~e~~~~s~~~e~~~l~--qE-L~~~r~~le~L~k~~~ElEaks 244 (439)
|+..++.-+..|+..++.+. .=+.-=|..++-+..|-+-|. ++ +.++++.|+.++.=+.-+|.=+
T Consensus 62 di~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lVeq~~ 130 (141)
T 3okq_A 62 DLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLIKLCC 130 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554442 112223333444444433322 22 3455666666666665555433
No 107
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=38.56 E-value=63 Score=32.24 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=34.2
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 039269 246 TDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNR 310 (439)
Q Consensus 246 ad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~R 310 (439)
|++-.|--|++.|+..-.++++++.++-.+..++...+.+|. .-|++|..++.-|+..
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQELRGN 60 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCCC
Confidence 345556666777777777777777776666666666666554 4455554444444433
No 108
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.57 E-value=1.5e+02 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHH
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSR 271 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~ 271 (439)
++-|-+..+.++....+++..|.+
T Consensus 86 i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 109
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.52 E-value=85 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRL 272 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~ 272 (439)
..||+..++.....|+.++...
T Consensus 56 K~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 56 KNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555555443
No 110
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=37.40 E-value=1.5e+02 Score=26.76 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHH
Q 039269 219 LLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQE 268 (439)
Q Consensus 219 l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqE 268 (439)
+++++.+.+.++..|-.. +.-..+.++-|++|+-.||.+.....-+
T Consensus 90 Lr~ql~akr~EL~aL~~a----~~~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 90 LRQQLISKRYEYNALLTA----SSPDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp HHHHHHHHHHHHHHHHTS----SSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554443221 2223356778899999988877554433
No 111
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=36.76 E-value=2.1e+02 Score=25.34 Aligned_cols=105 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHH-HHHHHHHhhhchHHHHHHhhHH-HHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccH
Q 039269 104 LKLNRVLNN-MQQRLTAAKADTEDLLARLNQE-VAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDM 181 (439)
Q Consensus 104 ~KlnRvl~T-mq~Rl~taKTDmEDLiaRLnQE-~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdm 181 (439)
+.|.+=|++ |..++..+.+.+++|-..|.=- ..+++=|+..+..|-..|..-...-|..+++-+ -|--++|+|.+
T Consensus 54 sel~qel~~~l~~~ld~l~~~~~~l~~~L~P~t~el~~~l~~~~e~Lr~~L~~d~EelR~~l~p~~---~el~~~l~~~~ 130 (165)
T 1gs9_A 54 SQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYR---GEVQAMLGQST 130 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 182 EELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLE 231 (439)
Q Consensus 182 eElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le 231 (439)
|++|.++..+=..|+.. +.+.++++|.+|.
T Consensus 131 EelR~kl~P~~eeL~~~--------------------~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 131 EELRVRLASHLRKLRKR--------------------LLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------------HHhhHHHHHHHhh
No 112
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=36.31 E-value=1.1e+02 Score=31.58 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 039269 217 EMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ 238 (439)
..++.+++.+|.+-..++|+..
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 113
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.98 E-value=44 Score=24.66 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKS 244 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEaks 244 (439)
++...++..+-.-.|++-+++++..|+++..+||+-+
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566788888899999999999999999999998754
No 114
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.84 E-value=2.8e+02 Score=25.68 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHH-HhhhhHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKS-LRSSQSEVKQELSR 271 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKs-LR~sq~elkqEl~~ 271 (439)
..+++.+..+...++.|+|.+-+...+.|..-=+-.=.|.-|=|. +|..|..|-++..+
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567788888888889999999888888887766655555555543 55555455444433
No 115
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.24 E-value=70 Score=24.34 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
..-|..+|+.|.....+|+.+++.+-.|...|..+|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555554444
No 116
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=34.06 E-value=79 Score=23.87 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVL 283 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L 283 (439)
|..+|..|-.....|+.+++.+-.++..+..+|
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555544
No 117
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=33.98 E-value=89 Score=26.76 Aligned_cols=36 Identities=14% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 250 LLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 250 vLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
-|-.++..|+.+...|.+|-+-|+.-..++|-++|.
T Consensus 22 ~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 22 SLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566777777888888888888888888877775
No 118
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=33.91 E-value=1.1e+02 Score=26.07 Aligned_cols=47 Identities=13% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHhhhhhhhhhc-cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhh
Q 039269 165 QAVLNEKERFTQMQW-DMEELRKQLLETELKLKYEQDERARAESSKMS 211 (439)
Q Consensus 165 QAvl~EREr~tqmQW-dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s 211 (439)
+.||.||=..-.+.= ++++|+.+|.|+=..+-..+.++-..|....-
T Consensus 27 kkiLaER~kpL~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~k 74 (106)
T 1j1d_B 27 KKILAERRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQ 74 (106)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Confidence 789998764433333 67999999999999998887777766655443
No 119
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=33.34 E-value=2.8e+02 Score=25.27 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHhhhhH--HhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039269 180 DMEELRKQLLETELKLKYE--QDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQH 237 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~--qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~ 237 (439)
++|-+.+++.++....+.. +-++.+.+ -..+.+|.+|-++=++|-.+-+.-+.++.
T Consensus 11 ~ve~v~~~L~e~h~qy~~ks~~yd~l~e~--y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~ 68 (170)
T 3l4q_C 11 SVEAVGAQLKVYHQQYQDKSREYDQLYEE--YTRTSQELQMKRTAIEAFNETIKIFEEQG 68 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888887665544 44555544 44556899999998888766665555544
No 120
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=32.51 E-value=91 Score=26.27 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhh
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDL 148 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDL 148 (439)
-|.-+..-|.+-...++.||++=|++|++++++=+.+..+.|-|
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445556666677899999999999999999998888877765
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=32.27 E-value=2.2e+02 Score=24.38 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 246 TDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 246 ad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
-++-.|+-+|.-|+-...++...+.++-++-.+--+-+...| -+-..+-+++..|+..|.+
T Consensus 23 NEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K-------r~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 23 NEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREK-------HAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777777776666555444433333 2233455666666666654
No 122
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=32.18 E-value=3e+02 Score=25.29 Aligned_cols=74 Identities=15% Similarity=0.332 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHhhhchHHHHHHhhHHHH-HHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhccHHH
Q 039269 105 KLNRVLNNMQQRLTAAKADTEDLLARLNQEVA-VRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQWDMEE 183 (439)
Q Consensus 105 KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~A-Vk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQWdmeE 183 (439)
.++--...++.+|. .+++++-+||..+.+ +|.=|..-+.++-..|+.....-+ +.++|+||+
T Consensus 52 ~l~~~~~~l~~~l~---p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~--------------~~~~~~~ee 114 (243)
T 2a01_A 52 SVTSTFSKLREQLG---PVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ--------------KKWQEEMEL 114 (243)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHH--------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhHHH
Confidence 33333344444433 345566666655543 444444444444444443333333 334555666
Q ss_pred HHHHHHHHHHhh
Q 039269 184 LRKQLLETELKL 195 (439)
Q Consensus 184 lr~k~~e~E~~L 195 (439)
+|.++.-|=..|
T Consensus 115 lr~~L~P~~eel 126 (243)
T 2a01_A 115 YRQKVEPLRAEL 126 (243)
T ss_dssp HHTTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 665554443333
No 123
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.99 E-value=1.5e+02 Score=22.99 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=31.6
Q ss_pred HHHHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 164 QQAVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 164 qQAvl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
..+...||.|...|.=-+++||.- +=...+.+..--+.+..++.=...|.+++..++.+++.|.
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~l-------vP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDS-------VPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------SGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH-------CcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999998854444444443 3333333332233333333334444444444444444443
No 124
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.91 E-value=3.4e+02 Score=28.16 Aligned_cols=31 Identities=16% Similarity=0.320 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhchHHHHHHhhH-HHHHHHH
Q 039269 110 LNNMQQRLTAAKADTEDLLARLNQ-EVAVRQF 140 (439)
Q Consensus 110 l~Tmq~Rl~taKTDmEDLiaRLnQ-E~AVk~f 140 (439)
|.+.|+-+...=-+|++.+.+|.+ ...+++|
T Consensus 91 L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~ 122 (464)
T 1m1j_B 91 LLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQY 122 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHH
Confidence 345555555555566666666643 3334444
No 125
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.69 E-value=1.3e+02 Score=30.47 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=17.0
Q ss_pred cchhHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHH
Q 039269 246 TDVKLLVKEVKSLRSS---QSEVKQELSRLMKEKLEV 279 (439)
Q Consensus 246 ad~KvLvKEVKsLR~s---q~elkqEl~~~~~eK~el 279 (439)
++++.+.|+|+.+..+ -.+|+++..+.-.+..++
T Consensus 52 ~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 52 HERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 3456677777766544 234444444433333333
No 126
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=29.50 E-value=1.5e+02 Score=30.67 Aligned_cols=15 Identities=13% Similarity=0.113 Sum_probs=8.6
Q ss_pred cchhHHHHHHHHHhh
Q 039269 246 TDVKLLVKEVKSLRS 260 (439)
Q Consensus 246 ad~KvLvKEVKsLR~ 260 (439)
+++..+.|+|..+.+
T Consensus 54 ~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 54 KKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 345556667666544
No 127
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=29.43 E-value=4.6e+02 Score=26.58 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhh
Q 039269 106 LNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDL 148 (439)
Q Consensus 106 lnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDL 148 (439)
|.-.|.+.|+-+-+-=-+||+++.+|-+-...-.-|...+++.
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555556666666666555555556666655
No 128
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.39 E-value=1.8e+02 Score=23.01 Aligned_cols=63 Identities=22% Similarity=0.247 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVK 243 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEak 243 (439)
.++.|-.+...+|..+...+..=+....- .+-..+...+..+++.+...|+.+-.+-.+||+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y-~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFF-SQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGG-GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666777666665444333321 1234567788899999999999999999988875
No 129
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.06 E-value=83 Score=22.33 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039269 212 IIQENEMLLQELEVVREQL 230 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~l 230 (439)
..++|..|..|...+|..|
T Consensus 13 Ll~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 13 LLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 3777777777777776654
No 130
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=28.90 E-value=5.3e+02 Score=27.22 Aligned_cols=35 Identities=20% Similarity=0.122 Sum_probs=16.4
Q ss_pred HHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHH
Q 039269 191 TELKLKYEQDERARAESSKMSIIQENEMLLQELEV 225 (439)
Q Consensus 191 ~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~ 225 (439)
|+.+|..+|.+-.++.-..+-+....+.-+.|+.+
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a 41 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAAVAANNA 41 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555555555544444444444444444433
No 131
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=28.62 E-value=2.4e+02 Score=23.04 Aligned_cols=62 Identities=21% Similarity=0.305 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 039269 216 NEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEG 281 (439)
Q Consensus 216 ~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~ 281 (439)
.+.+..+|..++..=..|-+++.++|. +...|..|++.++..-..|.++=.+|.++.+....
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEk----e~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ 67 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEK----NRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKR 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445555566655555555555555553 34556667777777777777666777766665543
No 132
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=28.43 E-value=4.2e+02 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=11.5
Q ss_pred hhhhccHHHHHHHHHHHHHhhh
Q 039269 175 TQMQWDMEELRKQLLETELKLK 196 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lk 196 (439)
+.++|+||++|.++.-|=..|+
T Consensus 132 ~~l~~~~eelr~kL~Py~~EL~ 153 (307)
T 2l7b_A 132 AMLGQSTEELRVRLASHLRKLR 153 (307)
T ss_dssp HHSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 133
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.96 E-value=66 Score=29.16 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=32.8
Q ss_pred eeechhhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHHHHHHHHHhhhhhhHHHHH
Q 039269 96 LALPSDQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEVAVRQFLTTKVKDLEVELE 153 (439)
Q Consensus 96 ivlP~dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~AVk~fL~tKVkDLEveLe 153 (439)
+=|+.+|+.+++.|....+......+..+-+.-+-|++.++-..|=..||+.|-.|+.
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~ 123 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEME 123 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6689999999999988777665544444444444444444333333344444444443
No 134
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.08 E-value=95 Score=31.21 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=26.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 251 LVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 251 LvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
|-.|++.||....+++++..+...+..+++.-|.+ ...-|+++..++--|+..++-
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-------SNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 33444444444444444444444443333333322 345667766666666655443
No 135
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=27.04 E-value=3.5e+02 Score=24.43 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=0.0
Q ss_pred CCCceeeechhhhhhHHHHHHHHHHHHHHhhhc-----hHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhhHhhHHHHHH
Q 039269 91 PRNSLLALPSDQRLKLNRVLNNMQQRLTAAKAD-----TEDLLARLNQEVAVRQFLTTKVKDLEVELETTSENCKENMQQ 165 (439)
Q Consensus 91 ~~d~~ivlP~dqR~KlnRvl~Tmq~Rl~taKTD-----mEDLiaRLnQE~AVk~fL~tKVkDLEveLettkqk~ke~lqQ 165 (439)
++|..++=-+-+|..+--=+.++..=..++.+- --++...++.-..-..-|.+|++||+.+|.. |.|.-+.++.
T Consensus 25 ~md~~l~~rL~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~e-K~K~~e~l~D 103 (152)
T 3a7p_A 25 SMDDLLIRRLTDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIAL-KNKNTERLNA 103 (152)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHhhhhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 039269 166 AVLNEKERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQ 229 (439)
Q Consensus 166 Avl~EREr~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~ 229 (439)
.+.+ |+-++..+|.+++.. -.||.+|.+-+-+.+.+
T Consensus 104 El~a--------------Lqlq~n~lE~kl~kL--------------q~EN~~LV~RWM~rk~q 139 (152)
T 3a7p_A 104 ALIS--------------GTIENNVLQQKLSDL--------------KKEHSQLVARWLKKTEK 139 (152)
T ss_dssp HHHH--------------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
No 136
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.93 E-value=3e+02 Score=23.62 Aligned_cols=76 Identities=17% Similarity=0.094 Sum_probs=49.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQK 285 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~~ 285 (439)
+.+..+-+.|..++..++++|+.+.....++|..-..-..-=.++|=.|+..-..-.+.|...-+.-.++.+-++.
T Consensus 2 ~~t~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~ 77 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE 77 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888999999999988888887555555556666666666555555554444444444444443
No 137
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.06 E-value=1.7e+02 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 039269 213 IQENEMLLQELEVVREQLENL 233 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L 233 (439)
..+|..|..++..++.++.-|
T Consensus 36 ~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 138
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=26.04 E-value=3.1e+02 Score=23.45 Aligned_cols=92 Identities=20% Similarity=0.251 Sum_probs=50.7
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHH
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLL 251 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvL 251 (439)
.....+..+.|+++.|+..... .......+|..||..++..-+.|++..-++|.+- --|
T Consensus 10 ~~~~~L~~E~e~~k~K~~~~~~-----------------e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~N----DDL 68 (111)
T 2v66_B 10 ADNQRLKYEVEALKEKLEHQYA-----------------QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN----DDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----hHH
Confidence 3455566677777777655221 1122334444455555444444444444444332 122
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 252 VKEVKSLRSSQSEVKQELSRLMKEKLEVEGVLQ 284 (439)
Q Consensus 252 vKEVKsLR~sq~elkqEl~~~~~eK~elE~~L~ 284 (439)
-+-=+.--.|..++..-+++++....=||.=|-
T Consensus 69 ER~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 69 ERAKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334567888999999999888776665544
No 139
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=25.43 E-value=3.1e+02 Score=23.24 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=59.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhchHHHHHHhhHHH-HHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 101 DQRLKLNRVLNNMQQRLTAAKADTEDLLARLNQEV-AVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 101 dqR~KlnRvl~Tmq~Rl~taKTDmEDLiaRLnQE~-AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
.++.-+..-|..-+.++..+...-+.|+..-+-.. .|.. ....+.+-...|...-..-+..|+|+.-. -++..
T Consensus 44 ~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~-~l~~L~~~w~~L~~~w~~r~~~L~~~l~l-----~~F~~ 117 (185)
T 3lbx_B 44 KYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIRE-KLQQVMSRRKEMNEKWEARWERLRMLLEV-----CQFSR 117 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 34555666666667777777766677776644221 1211 11223333334444444445556655422 13344
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 039269 180 DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLH 234 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~ 234 (439)
|++.+-.=+...|..|.+. +-+..-...+....+-+.+..+|.+-.+.+..|.
T Consensus 118 d~~~~~~Wl~~~e~~L~~~--~~g~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~ 170 (185)
T 3lbx_B 118 DASVAEAWLIAQEPYLASG--DFGHTVDSVEKLIKRHEAFEKSTASWAERFAALE 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHCC--CCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHHHHHhHhhhccC--CCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 6666655555566555542 1122222333344444444444444444444443
No 140
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=25.35 E-value=2.6e+02 Score=22.37 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039269 274 KEKLEVEGVLQKEKQRMEHADIANLKLL 301 (439)
Q Consensus 274 ~eK~elE~~L~~Ekq~~e~~~~ar~Kll 301 (439)
..|..+++.|+.|+=....|.+=.+.+|
T Consensus 39 ~~~~~lek~L~~E~~LK~QAVNKLAEIM 66 (71)
T 1s1c_X 39 NLKAAFEKNINTERTLKTQAVNKLAEIM 66 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999977777776666555
No 141
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=25.33 E-value=2.8e+02 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHhhHhhHHHHHHHHHHhhhhhhhhhc
Q 039269 135 VAVRQFLTTKVKDLEVELETTSENCKENMQQAVLNEKERFTQMQW 179 (439)
Q Consensus 135 ~AVk~fL~tKVkDLEveLettkqk~ke~lqQAvl~EREr~tqmQW 179 (439)
-++++||-.-+...+.+|...|+..-+.++++|-. ..++||
T Consensus 76 p~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~----~k~~q~ 116 (214)
T 2cly_A 76 ASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDM----EKSQQA 116 (214)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 35788999999999999999999999999998866 346777
No 142
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.11 E-value=1.1e+02 Score=27.16 Aligned_cols=53 Identities=19% Similarity=0.232 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHhhh
Q 039269 261 SQSEVKQELSRLMKEKLEVEGVLQKEK-QRMEHADIANLKLLHECEILRNRLQE 313 (439)
Q Consensus 261 sq~elkqEl~~~~~eK~elE~~L~~Ek-q~~e~~~~ar~KllhEc~iLr~RLQE 313 (439)
.-.+..+++++.-.|.-+|-..|=.|- .+...++..|..+=.....|+.+|.+
T Consensus 61 ~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555444443 22333344444444444555555544
No 143
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.99 E-value=1.4e+02 Score=29.93 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=7.6
Q ss_pred cccccccceecCCC
Q 039269 319 LSEEEDKLTVDTSS 332 (439)
Q Consensus 319 l~ee~d~l~vd~Ss 332 (439)
-.+|++|..|..-+
T Consensus 116 g~~e~~n~~~~~~g 129 (425)
T 2dq3_A 116 GEDEKDNVEVRRWG 129 (425)
T ss_dssp CSSGGGCEEEEEES
T ss_pred CCCccCcEEEEEeC
Confidence 33556666565544
No 144
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.95 E-value=84 Score=30.41 Aligned_cols=9 Identities=33% Similarity=0.615 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 039269 222 ELEVVREQL 230 (439)
Q Consensus 222 EL~~~r~~l 230 (439)
||..+++++
T Consensus 83 El~~LkeEl 91 (251)
T 3m9b_A 83 QLLALREEV 91 (251)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 145
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=24.84 E-value=3.3e+02 Score=23.41 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=83.1
Q ss_pred hhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhccccchhHHHHH
Q 039269 176 QMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEV-VREQLENLHKQHEESEVKSKTDVKLLVKE 254 (439)
Q Consensus 176 qmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~-~r~~le~L~k~~~ElEakskad~KvLvKE 254 (439)
++.++.+++-.=+.+.|..+.+.. -+.--........+.+.+..++.+ -...+..+...-.+|-...-.+
T Consensus 5 ~f~~~~~~l~~Wl~~ke~~l~~~~--~g~dl~~v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~------- 75 (218)
T 3edu_A 5 QLKRETDDLEQWISEKELVASSPE--MGQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSE------- 75 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC--CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc--cCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCC-------
Confidence 334444555444555555444321 111112223334455555556655 3455555544444333322221
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccccccccccceecCCCCc
Q 039269 255 VKSLRSSQSEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVNFLSEEEDKLTVDTSSPS 334 (439)
Q Consensus 255 VKsLR~sq~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~~l~ee~d~l~vd~Ss~s 334 (439)
-..+++-++..-..+..+..+...-+++-+.+. ...+|.++|.-+...|++-...++ ++ +.-|..+..
T Consensus 76 -------~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-~~~~F~~~~~e~~~Wl~ek~~~l~---~~-~g~dl~~v~ 143 (218)
T 3edu_A 76 -------AATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEILGLIDEKHRELP---ED-VGLDASTAE 143 (218)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCC---------------
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC---Cc-cCCCHHHHH
Confidence 124555556667778888777766565665554 457899999999999998665553 11 323333221
Q ss_pred c------hh-hhhhccchhHHHHHHHHhhhhhh
Q 039269 335 D------AV-DLLTTSDNRIGLLVAETQLLAQD 360 (439)
Q Consensus 335 D------Al-dLLaTSDnRI~lLlAEaQlL~~d 360 (439)
. ++ .=|.....+|.-|..+|+-|...
T Consensus 144 ~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~~~ 176 (218)
T 3edu_A 144 SFHRVHTAFERELHLLGVQVQQFQDVATRLQTA 176 (218)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 12334456777777777776544
No 146
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=24.20 E-value=2.9e+02 Score=23.26 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=13.3
Q ss_pred cHHHHHHHHHHHHHhhhhHH
Q 039269 180 DMEELRKQLLETELKLKYEQ 199 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~q 199 (439)
.+++|-.++..-|..|...+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq 22 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQ 22 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhH
Confidence 35567777777777777663
No 147
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=23.92 E-value=3.4e+02 Score=23.80 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=16.9
Q ss_pred hhhhccHHHHHHHHHHHHHhhhhH
Q 039269 175 TQMQWDMEELRKQLLETELKLKYE 198 (439)
Q Consensus 175 tqmQWdmeElr~k~~e~E~~Lks~ 198 (439)
+.++|+||++|.++.=|=..|+..
T Consensus 107 ~~~~~~~e~lr~~l~Py~~el~~~ 130 (185)
T 3r2p_A 107 KKWQEEMELYRQKVEPLRAELQEG 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 346788888888887766666554
No 148
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=23.88 E-value=1.6e+02 Score=23.23 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHhhhhccc
Q 039269 296 ANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 296 ar~KllhEc~iLr~RLQECn~~ 317 (439)
||+.+=+=|+-+-...-+|+.+
T Consensus 36 aRk~LE~~vrk~~k~~n~~~~~ 57 (61)
T 3l4f_A 36 ARKDLEKLVRKVLKNMNDPAWD 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHSCSEE
T ss_pred HHHHHHHHHHHHHhhccCcccc
Confidence 3444444444444555566543
No 149
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=23.22 E-value=1.8e+02 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQ 236 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~ 236 (439)
..||..|..+++.+++++..|..-
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666555555555433
No 150
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.12 E-value=1.3e+02 Score=23.08 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 039269 248 VKLLVKEVKSLRSSQSEVKQELSRLMKEKLEVE 280 (439)
Q Consensus 248 ~KvLvKEVKsLR~sq~elkqEl~~~~~eK~elE 280 (439)
-.-||+-|-.||.....|++||+.--...+-+|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 346889999999999999999876555544444
No 151
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.93 E-value=1.8e+02 Score=23.36 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039269 213 IQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k 235 (439)
..||..|..++..+++++..|..
T Consensus 49 ~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 49 TAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777766666666543
No 152
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.90 E-value=2.2e+02 Score=21.07 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 039269 213 IQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k 235 (439)
..+|..|..++..++.++..|..
T Consensus 35 ~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 35 SSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555543
No 153
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=22.56 E-value=3.8e+02 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 039269 220 LQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELSRLMKEKLE 278 (439)
Q Consensus 220 ~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~~~~~eK~e 278 (439)
.+.|+..+++...+...+..+++- ++.++--.+.|.|=+.-.++.++|+..|+++.+
T Consensus 40 ~~~L~~~~~m~~~i~ek~~~i~~~--~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~ 96 (119)
T 2avr_X 40 RQALAQNEQVYNELSQRAQRLQAE--ANTRFYKSQYQELASKYEDALKKLEAEMEQQKA 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555542 333444444444444444444555666655443
No 154
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=22.41 E-value=3e+02 Score=22.04 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh------ccccchhHHHHHHHHH
Q 039269 210 MSIIQENEMLLQELEVVREQLENLHKQHEESEV------KSKTDVKLLVKEVKSL 258 (439)
Q Consensus 210 ~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEa------kskad~KvLvKEVKsL 258 (439)
.....+.+.++.+|+.++..++.|.+.|..+=. ..+.++--|+.||+.+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~ 62 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKT 62 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666655422 2233444455555543
No 155
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=22.17 E-value=3.2e+02 Score=22.23 Aligned_cols=58 Identities=14% Similarity=0.156 Sum_probs=42.2
Q ss_pred hhhhhhhccHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039269 172 ERFTQMQWDMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVREQLENLHK 235 (439)
Q Consensus 172 Er~tqmQWdmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r~~le~L~k 235 (439)
.-|..++=.++|...=+..||+.+.+.. -+.+.........++.+|+.++.+|..+..
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p------~~~R~~~~~klr~Yk~dL~~lk~elk~~~~ 95 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIP------PQSRGMYSNRMRSYKQEMGKLETDFKRSRI 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC------TTTHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777888999999999999988872 244556667777777777777777666543
No 156
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.09 E-value=55 Score=23.91 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.5
Q ss_pred HHHHHHhHHHHHHHHhhh
Q 039269 296 ANLKLLHECEILRNRLQE 313 (439)
Q Consensus 296 ar~KllhEc~iLr~RLQE 313 (439)
-|.++++||..+|.=||.
T Consensus 13 rkerIv~eCnavrqALQd 30 (40)
T 4e17_B 13 RRERIVAECNAVRQALQD 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367899999999999985
No 157
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=22.03 E-value=3.1e+02 Score=21.97 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 039269 213 IQENEMLLQELEVVREQLENLHKQHEE 239 (439)
Q Consensus 213 ~~e~~~l~qEL~~~r~~le~L~k~~~E 239 (439)
..++..+.-|++-++..++++...|++
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~ 39 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQE 39 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666653
No 158
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.88 E-value=1.4e+02 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.105 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 039269 211 SIIQENEMLLQELEVVREQL 230 (439)
Q Consensus 211 s~~~e~~~l~qEL~~~r~~l 230 (439)
...++|..|..|.+.+|..|
T Consensus 12 eLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 12 XILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34777777777777776654
No 159
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.43 E-value=1.1e+02 Score=25.86 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=30.8
Q ss_pred hchHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHhh
Q 039269 122 ADTEDLLARLNQEVAVRQFLTTKVKDLEVELETTS 156 (439)
Q Consensus 122 TDmEDLiaRLnQE~AVk~fL~tKVkDLEveLettk 156 (439)
.+.++++.++.++..--.-|..+|..||.||+..|
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46688999999999999999999999999998765
No 160
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.39 E-value=1.6e+02 Score=21.82 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=6.0
Q ss_pred HHHHHHHhhhhHHHH
Q 039269 252 VKEVKSLRSSQSEVK 266 (439)
Q Consensus 252 vKEVKsLR~sq~elk 266 (439)
-.||..|+.....|+
T Consensus 42 ~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 42 QSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444443333
No 161
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=21.19 E-value=3.9e+02 Score=22.89 Aligned_cols=30 Identities=20% Similarity=0.148 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 039269 212 IIQENEMLLQELEVVREQLENLHKQHEESE 241 (439)
Q Consensus 212 ~~~e~~~l~qEL~~~r~~le~L~k~~~ElE 241 (439)
...-...|+.-|..+..+|++|.+-..-+|
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666677778888877666655
No 162
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.11 E-value=2.1e+02 Score=21.47 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEES 240 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~El 240 (439)
........|+-|-.-|...|++++.|..+.+.|
T Consensus 17 ~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677777777777777777777666543
No 163
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.87 E-value=2.8e+02 Score=23.79 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=34.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 208 SKMSIIQENEMLLQELEVVREQLENLHKQHEESEVKSKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 208 ~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ElEakskad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
+|+..++|.=.|...+..+.+.-..|+..-.+. -+.+.-|.-||.-||.....|.+|-.
T Consensus 31 SKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~----~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 31 SKQELIKEYLELEKSLSRMEDENNRLRLESKRL----DARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544333333332222 34566788899999998888877643
No 164
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.81 E-value=2.9e+02 Score=27.76 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 263 SEVKQELSRLMKEKLEVEGVLQKEKQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 263 ~elkqEl~~~~~eK~elE~~L~~Ekq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
..|+.||...-+.+.++++-+.+-....+....--.+.-.+-+.|+|.+|+-.-|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455544444444444433333222222222333344556677777776554
No 165
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=20.76 E-value=3.4e+02 Score=22.01 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 039269 217 EMLLQELEVVREQLENLHKQHEESEV 242 (439)
Q Consensus 217 ~~l~qEL~~~r~~le~L~k~~~ElEa 242 (439)
.++..++..+|.+++.+..+...++.
T Consensus 52 ~~ye~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 52 DLYEEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777766655554
No 166
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.68 E-value=1.1e+02 Score=22.77 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=20.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 039269 207 SSKMSIIQENEMLLQELEVVREQLENLHKQHE 238 (439)
Q Consensus 207 ~~~~s~~~e~~~l~qEL~~~r~~le~L~k~~~ 238 (439)
+.......||..|+++++.++++++.|..+..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566677777777777777766666554
No 167
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=20.63 E-value=5e+02 Score=23.92 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhhhhhhhhc-cHHHHHHHHHHHHHhhhhHHhhhHhhhhhhhhhHHHHHHHHHHHHHHH
Q 039269 161 ENMQQAVLNEKERFTQMQW-DMEELRKQLLETELKLKYEQDERARAESSKMSIIQENEMLLQELEVVR 227 (439)
Q Consensus 161 e~lqQAvl~EREr~tqmQW-dmeElr~k~~e~E~~Lks~qdek~~~e~~~~s~~~e~~~l~qEL~~~r 227 (439)
+.--+.||.||=.--.+.= +.++|+..|.++=..+-..+.++-..+....--.-|...|.+.+..++
T Consensus 39 ~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 39 RGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 3344678887653333333 689999999999999999988888887776666666666655555553
No 168
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.46 E-value=3e+02 Score=28.47 Aligned_cols=27 Identities=7% Similarity=0.208 Sum_probs=17.2
Q ss_pred cccchhHHHHHHHHHhhhhHHHHHHHH
Q 039269 244 SKTDVKLLVKEVKSLRSSQSEVKQELS 270 (439)
Q Consensus 244 skad~KvLvKEVKsLR~sq~elkqEl~ 270 (439)
.+++.|.|-.++|.|-....++++++.
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666667777666666665554
No 169
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=20.19 E-value=6.7e+02 Score=26.80 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHHhhhhHHhhh
Q 039269 180 DMEELRKQLLETELKLKYEQDER 202 (439)
Q Consensus 180 dmeElr~k~~e~E~~Lks~qdek 202 (439)
.+++||...+.+|-.+|..++..
T Consensus 10 ~~~~l~~~~q~~e~~~k~Le~~Q 32 (575)
T 1bf5_A 10 KVRNVKDKVMCIEHEIKSLEDLQ 32 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777776665543
No 170
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.04 E-value=2.9e+02 Score=22.78 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=41.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHhhhhccc
Q 039269 258 LRSSQSEVKQELSRLMKEKLEVEGVLQKE---KQRMEHADIANLKLLHECEILRNRLQECSVN 317 (439)
Q Consensus 258 LR~sq~elkqEl~~~~~eK~elE~~L~~E---kq~~e~~~~ar~KllhEc~iLr~RLQECn~~ 317 (439)
|-.....|++++..-|+-|.=.|+++..= |.-.+++..--...=..+..|+++|++-+..
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLRRATTDLGRSLGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44445667788888888888888887655 3334444444555566788899999987754
Done!