BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039270
(131 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O66780|TPX_AQUAE Probable thiol peroxidase OS=Aquifex aeolicus (strain VF5) GN=tpx
PE=1 SV=1
Length = 169
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 76 MSEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVLGTQWLRTL 122
M F R C + N+ Q V+V DF RD+E Y V++G L+ +
Sbjct: 85 MDLPFAQKRFCESFNI--QNVTVASDFRYRDMEKYGVLIGEGALKGI 129
>sp|Q9LQE3|ARFO_ARATH Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15
PE=3 SV=2
Length = 593
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 71 STRNFMSEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S S+QF STR CT V +QGV++ +L L GYD ++
Sbjct: 498 SPTKIQSKQFSSTRTCTKVQ--MQGVTIGRAVDLSVLNGYDQLI 539
>sp|Q9LQE8|ARFN_ARATH Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14
PE=3 SV=2
Length = 605
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 71 STRNFMSEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S S+QF STR CT V +QGV++ +L L GYD ++
Sbjct: 497 SPTEIQSKQFSSTRTCTKVQ--MQGVTIGRAVDLSVLNGYDQLI 538
>sp|Q6V1P9|PCD23_HUMAN Protocadherin-23 OS=Homo sapiens GN=DCHS2 PE=2 SV=1
Length = 2916
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 38 ISLRVISGARASETMRINGRIGNISPIVLVDSGSTRNFMSE 78
IS R++S ++ NG I ISP++L+D+ ST F+ E
Sbjct: 2025 ISYRILSSSKEFSIDPKNGTIFTISPVLLLDTISTTQFLVE 2065
>sp|Q9C8N7|ARFV_ARATH Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2
Length = 598
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 71 STRNFMSEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S S+QF STR CT V +QGV++ +L L GYD ++
Sbjct: 496 SPTEIQSKQFSSTRTCTKVQ--MQGVTIERAVDLSVLNGYDQLI 537
>sp|Q9C7I9|ARFT_ARATH Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3
Length = 590
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 77 SEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S+QF STR CT V +QGV++ +L L GYD ++
Sbjct: 488 SKQFGSTRTCTKVQ--MQGVTIGRAVDLSVLNGYDQLI 523
>sp|Q9C8N9|ARFU_ARATH Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21
PE=3 SV=2
Length = 606
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 77 SEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S+QF S+R CT V +QGV++ +L L GYD ++
Sbjct: 504 SKQFSSSRTCTKVQ--MQGVTIGRAVDLSVLNGYDQLI 539
>sp|P40967|PMEL_HUMAN Melanocyte protein PMEL OS=Homo sapiens GN=PMEL PE=1 SV=2
Length = 661
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 1 MPTTNQTTYRNSSIPVRRLSRTELQERCAKNSTKM--LEISLRVISGARASE 50
MPT T +PV + T L E +T M E+S+ V+SG A++
Sbjct: 366 MPTAESTGMTPEKVPVSEVMGTTLAEMSTPEATGMTPAEVSIVVLSGTTAAQ 417
>sp|Q9XID4|ARFL_ARATH Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2
Length = 593
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 71 STRNFMSEQFYSTRKCTNVNLILQGVSVIVDFNLRDLEGYDVVL 114
S ++QF S+R CT V +QGV++ +L L GYD ++
Sbjct: 498 SPTEIQNKQFSSSRTCTKVQ--MQGVTIGRAVDLSVLNGYDQLI 539
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,907,951
Number of Sequences: 539616
Number of extensions: 1405551
Number of successful extensions: 3331
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3330
Number of HSP's gapped (non-prelim): 12
length of query: 131
length of database: 191,569,459
effective HSP length: 97
effective length of query: 34
effective length of database: 139,226,707
effective search space: 4733708038
effective search space used: 4733708038
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)