Query 039270
Match_columns 131
No_of_seqs 124 out of 480
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 99.8 1.8E-19 6.1E-24 132.2 8.5 83 48-131 21-127 (148)
2 2i1a_A DNA damage-inducible pr 99.7 4.4E-17 1.5E-21 117.6 8.0 82 48-131 23-128 (148)
3 3slz_A GAG-Pro-POL polyprotein 98.5 3.6E-07 1.2E-11 65.8 8.0 85 44-130 15-115 (132)
4 3ec0_A Protease; HIV-2, inhibi 98.1 1.7E-05 5.7E-10 54.5 8.8 74 53-129 10-99 (99)
5 2hs1_A HIV-1 protease; ultra-h 98.1 2.6E-05 8.8E-10 53.5 9.1 75 52-129 9-99 (99)
6 1fmb_A EIAV protease; hydrolas 97.9 2.7E-05 9.2E-10 53.7 6.6 76 51-129 8-104 (104)
7 3ka2_A [L-Ala51;Gly51']HIV-1 p 97.6 0.00047 1.6E-08 52.7 9.3 76 52-130 9-100 (203)
8 2hah_A Protease, retropepsin; 97.4 0.00073 2.5E-08 47.4 7.4 69 56-124 18-112 (116)
9 3ka2_A [L-Ala51;Gly51']HIV-1 p 96.8 0.0083 2.8E-07 45.8 9.4 75 52-129 113-203 (203)
10 2pma_A Uncharacterized protein 95.0 0.1 3.6E-06 37.7 7.6 40 88-128 95-136 (146)
11 3sqf_A Protease; folded monome 94.8 0.08 2.7E-06 36.9 6.3 75 53-129 11-107 (114)
12 2rsp_A RSV protease; hydrolase 94.2 0.057 1.9E-06 38.1 4.3 71 58-128 27-123 (124)
13 2jys_A Protease/reverse transc 93.9 0.32 1.1E-05 33.1 7.4 67 54-123 10-97 (107)
14 1lya_A Cathepsin D; lysosomal 77.9 2.3 8E-05 27.8 3.6 28 51-78 14-43 (97)
15 3psg_A Pepsinogen; hydrolase(a 74.2 19 0.00065 28.5 8.7 27 51-77 57-85 (370)
16 3qvc_A Histo-aspartic protease 73.6 4.1 0.00014 33.7 4.8 77 52-129 318-438 (451)
17 3liy_A Protease; hydrolase, hy 73.0 2.3 8E-05 29.5 2.6 26 53-78 12-42 (116)
18 1wkr_A Polyporopepsin; hydrola 72.6 18 0.00061 27.9 8.1 28 51-78 13-42 (340)
19 3cms_A Chymosin B; hydrolase, 72.0 4 0.00014 31.5 4.1 73 56-129 198-312 (323)
20 1lya_B Cathepsin D; lysosomal 71.7 4.2 0.00014 30.0 4.0 73 56-129 108-230 (241)
21 1wkr_A Polyporopepsin; hydrola 71.6 3 0.0001 32.5 3.3 74 55-129 194-322 (340)
22 3fv3_A SAPP1P-secreted asparti 71.6 24 0.00082 27.1 8.6 28 51-78 13-42 (339)
23 3qvc_A Histo-aspartic protease 71.1 17 0.00057 29.9 7.9 27 52-78 139-167 (451)
24 4aa9_A Chymosin; hydrolase, as 70.9 4.9 0.00017 30.8 4.4 73 56-129 195-309 (320)
25 1htr_B Gastricsin; aspartyl pr 70.1 3.1 0.00011 32.2 3.1 73 56-129 198-318 (329)
26 2x0b_A Renin; hydrolase-hormon 69.3 22 0.00075 28.4 8.1 28 51-78 62-91 (383)
27 2bju_A Plasmepsin II; aspartic 66.7 24 0.00081 29.1 7.9 28 51-78 139-168 (453)
28 1miq_A Plasmepsin; aspartic pr 66.0 12 0.00042 29.6 5.9 26 52-77 64-91 (375)
29 3lpj_A Beta-secretase 1; alzhe 61.4 33 0.0011 27.8 7.8 28 51-78 75-104 (455)
30 1miq_A Plasmepsin; aspartic pr 59.6 8.6 0.0003 30.6 3.9 77 52-129 243-363 (375)
31 1bxo_A Protein (penicillopepsi 59.5 8 0.00027 29.9 3.6 28 51-78 16-43 (323)
32 1izd_A Aspartic proteinase; su 58.8 8.3 0.00028 29.8 3.6 28 51-78 16-43 (323)
33 1yg9_A Aspartic protease BLA G 57.9 8.8 0.0003 29.8 3.6 26 52-77 19-44 (330)
34 1ibq_A Aspergillopepsin; aspar 56.4 8.8 0.0003 29.6 3.4 28 51-78 15-42 (325)
35 1b5f_A Protein (cardosin A); h 54.1 12 0.0004 27.7 3.6 27 51-77 14-42 (239)
36 2apr_A Rhizopuspepsin; hydrola 53.9 11 0.00039 29.0 3.6 28 51-78 16-45 (325)
37 1oew_A Endothiapepsin; hydrola 50.2 14 0.00047 28.5 3.6 28 51-78 16-45 (329)
38 1mpp_A Pepsin; hydrolase(acid 49.6 14 0.0005 28.7 3.6 27 51-77 19-47 (361)
39 2qzx_A Candidapepsin-5; aspart 49.5 14 0.00049 28.5 3.6 29 51-79 13-43 (342)
40 3c9x_A Trichoderma reesei aspa 49.4 15 0.0005 28.4 3.6 28 51-78 16-45 (329)
41 1dpj_A Proteinase A; proteinas 48.3 16 0.00053 28.1 3.6 27 51-77 14-42 (329)
42 1j71_A Candidapepsin, aspartic 48.2 16 0.00053 28.2 3.6 28 51-78 13-42 (334)
43 1izd_A Aspartic proteinase; su 48.1 8.9 0.0003 29.6 2.1 68 61-129 207-312 (323)
44 2qp8_A Beta-secretase 1; BACE1 47.0 16 0.00056 28.8 3.6 28 51-78 22-51 (395)
45 4aa9_A Chymosin; hydrolase, as 46.0 18 0.00061 27.6 3.6 27 52-78 13-41 (320)
46 3pvk_A Candidapepsin-2; hydrol 45.3 18 0.00063 27.7 3.6 28 51-78 13-42 (342)
47 2ewy_A Beta-secretase 2; BACE2 45.0 18 0.00063 28.3 3.6 28 51-78 14-43 (383)
48 2l2n_A Hyponastic leave 1; DSR 44.2 34 0.0012 22.5 4.3 55 7-62 6-60 (103)
49 3cms_A Chymosin B; hydrolase, 43.5 21 0.0007 27.4 3.6 27 51-77 15-43 (323)
50 1htr_B Gastricsin; aspartyl pr 42.5 22 0.00074 27.3 3.6 28 51-78 13-42 (329)
51 3vf3_A Beta-secretase 1; struc 42.3 21 0.00073 28.2 3.6 28 51-78 29-58 (402)
52 1am5_A Pepsin, acid proteinase 42.3 22 0.00075 27.2 3.6 28 51-78 13-42 (324)
53 1bxo_A Protein (penicillopepsi 42.3 15 0.00051 28.3 2.6 68 61-129 206-312 (323)
54 3aup_A SBG7S, BG, basic 7S glo 42.0 26 0.00089 27.8 4.1 30 50-79 21-52 (403)
55 1tzs_A Cathepsin E; hydrolase, 41.6 20 0.0007 27.8 3.4 26 52-77 25-52 (351)
56 3k1w_A Renin; protease, altern 39.8 25 0.00086 26.9 3.6 27 51-77 19-47 (341)
57 3adj_A F21M12.9 protein; HYL1, 37.3 54 0.0018 20.0 4.3 41 21-61 7-47 (76)
58 1qdm_A Prophytepsin; aspartic 33.0 36 0.0012 28.1 3.6 27 51-77 53-81 (478)
59 3adg_A F21M12.9 protein; HYL1, 29.3 93 0.0032 18.6 4.3 40 21-61 6-45 (73)
60 1di2_A XLRBPA, double stranded 28.3 59 0.002 19.3 3.2 40 22-61 4-43 (69)
61 3adl_A RISC-loading complex su 26.9 1.1E+02 0.0037 19.3 4.5 43 19-61 16-58 (88)
62 3vla_A EDGP; extracellular, in 26.5 65 0.0022 25.8 4.1 30 49-78 19-50 (413)
63 1uhz_A Staufen (RNA binding pr 25.5 98 0.0034 19.6 4.1 43 19-61 7-49 (89)
64 1ekz_A DSRBDIII, maternal effe 25.1 1E+02 0.0035 18.5 4.0 40 20-60 9-48 (76)
65 3au7_A TIAS, putative uncharac 21.6 94 0.0032 25.6 4.1 37 41-77 276-320 (402)
66 2khx_A Ribonuclease 3; drosha, 20.8 1.6E+02 0.0054 18.4 4.3 42 21-62 4-50 (85)
67 1whq_A RNA helicase A; double- 20.4 88 0.003 20.3 3.1 40 19-60 7-46 (99)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=132.25 Aligned_cols=83 Identities=19% Similarity=0.266 Sum_probs=75.4
Q ss_pred cCCeEEEEEEECCeeeEEEEeCCCccccccceeE------------------------eeeeeeeeEEEECcEEEEeeeE
Q 039270 48 ASETMRINGRIGNISPIVLVDSGSTRNFMSEQFY------------------------STRKCTNVNLILQGVSVIVDFN 103 (131)
Q Consensus 48 ~~~t~rv~~~I~~~~v~aLIDSGsThnFIs~~~a------------------------~~g~~~~~~~~i~g~~f~~df~ 103 (131)
....+++.++|||+++.+||||||+++||+.++| +.|++..+++++++..+..+|.
T Consensus 21 ~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~~~~~~~~~ 100 (148)
T 3s8i_A 21 QVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFS 100 (148)
T ss_dssp -CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECCEEEEEEEE
Confidence 3468999999999999999999999999999998 2456677899999999999999
Q ss_pred EecCCCcceeecccccccCCCeeeeecC
Q 039270 104 LRDLEGYDVVLGTQWLRTLEPILWDFAS 131 (131)
Q Consensus 104 vl~l~~~DvILG~dWL~~~~pi~idw~~ 131 (131)
|++...+|+|||||||++++. .|||++
T Consensus 101 Vle~~~~d~LLGmD~L~~~~~-~ID~~~ 127 (148)
T 3s8i_A 101 ILEDQPMDMLLGLDMLRRHQC-SIDLKK 127 (148)
T ss_dssp EETTCSSSEEECHHHHHHTTC-EEETTT
T ss_pred EeCCCCcCeeccHHHHHhCCE-EEEcCC
Confidence 999999999999999999997 799974
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.4e-17 Score=117.59 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=71.3
Q ss_pred cCCeEEEEEEECCeeeEEEEeCCCccccccceeE------------------------eeeeeeeeEEEECcEEEEeeeE
Q 039270 48 ASETMRINGRIGNISPIVLVDSGSTRNFMSEQFY------------------------STRKCTNVNLILQGVSVIVDFN 103 (131)
Q Consensus 48 ~~~t~rv~~~I~~~~v~aLIDSGsThnFIs~~~a------------------------~~g~~~~~~~~i~g~~f~~df~ 103 (131)
..+.+.+.+.|+|+++.+||||||++++|+.+++ +.+.+...++++++..+..+|.
T Consensus 23 ~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~~~~~~~~~~i~ig~~~~~~~~~ 102 (148)
T 2i1a_A 23 QVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFT 102 (148)
T ss_dssp CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC-----------CEEEEEEEEEETTEEEEEEEE
T ss_pred ccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcccccEEEEEEEEECCEEeceeEE
Confidence 4578999999999999999999999999998887 0223445688999999999999
Q ss_pred EecCCCcceeecccccccCCCeeeeecC
Q 039270 104 LRDLEGYDVVLGTQWLRTLEPILWDFAS 131 (131)
Q Consensus 104 vl~l~~~DvILG~dWL~~~~pi~idw~~ 131 (131)
|++ .++|.|||||||++++. .|||+.
T Consensus 103 vl~-~~~d~iLG~d~L~~~~~-~ID~~~ 128 (148)
T 2i1a_A 103 VLD-TDIDVLIGLDMLKRHLA-CVDLKE 128 (148)
T ss_dssp EEC-SSCSEEECHHHHHHTTC-EEETTT
T ss_pred Eec-CCCCeEecHHHHhhCCE-EEECCC
Confidence 999 78999999999999988 799863
No 3
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=98.52 E-value=3.6e-07 Score=65.83 Aligned_cols=85 Identities=21% Similarity=0.211 Sum_probs=63.0
Q ss_pred cccccCCeEEEEEEECCeeeEEEEeCCCccccccceeE-----------eee-----eeeeeEEEECcEEEEeeeEEecC
Q 039270 44 SGARASETMRINGRIGNISPIVLVDSGSTRNFMSEQFY-----------STR-----KCTNVNLILQGVSVIVDFNLRDL 107 (131)
Q Consensus 44 ~g~~~~~t~rv~~~I~~~~v~aLIDSGsThnFIs~~~a-----------~~g-----~~~~~~~~i~g~~f~~df~vl~l 107 (131)
+|..+.+.-.+.++|+|+++.+|+|+||+...++..-+ ..| .+..+++++.++.....+.|++-
T Consensus 15 ~~~d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p~~~~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~lV~~~ 94 (132)
T 3slz_A 15 QGQEPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPD 94 (132)
T ss_dssp ---CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCSEEEEEEEEECSSCEEEEEEECCEEEEETTEEEEECCEECTT
T ss_pred cCCCccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCCCCCCceEEEccCCEEEEEEEeeeEEEECCeeecceEEEECC
Confidence 44556667788899999999999999999999987544 111 22346788999988888877432
Q ss_pred CCcceeecccccccCCCeeeeec
Q 039270 108 EGYDVVLGTQWLRTLEPILWDFA 130 (131)
Q Consensus 108 ~~~DvILG~dWL~~~~pi~idw~ 130 (131)
. ..-|||+|||.+++. .+|+.
T Consensus 95 t-PvnLLGrd~Ltqlg~-tL~fp 115 (132)
T 3slz_A 95 C-PYPLLGRDLLTKLKA-QIHFE 115 (132)
T ss_dssp S-SSCEECHHHHHHHTC-EEEEE
T ss_pred C-CccEECHhhHhhCCc-EEECC
Confidence 2 357899999999998 67764
No 4
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.13 E-value=1.7e-05 Score=54.49 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=58.0
Q ss_pred EEEEEECCeeeEEEEeCCCccccccceeE----------------eeeeeeeeEEEECcEEEEeeeEEecCCCcceeecc
Q 039270 53 RINGRIGNISPIVLVDSGSTRNFMSEQFY----------------STRKCTNVNLILQGVSVIVDFNLRDLEGYDVVLGT 116 (131)
Q Consensus 53 rv~~~I~~~~v~aLIDSGsThnFIs~~~a----------------~~g~~~~~~~~i~g~~f~~df~vl~l~~~DvILG~ 116 (131)
.+..+|+|+.+.+|+|+||-++.++..-. ....+..+++++.|+.....++|-+. .. =|+|.
T Consensus 10 ~vti~I~Gq~~e~LLDTGAD~TVl~~~~~Pg~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV~~t-Pv-niiGR 87 (99)
T 3ec0_A 10 VVTAYIEGQPVEVLLDTGADDSIVAGIELGNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTGDT-PI-NIFGR 87 (99)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEESSCCCCSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEECC-SS-CEECH
T ss_pred eEEEEECCEEEEEEEecCCCceEEcCcccCCCCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEeCCC-Cc-Ceeeh
Confidence 57789999999999999999999974322 12245678999999998888888442 23 56899
Q ss_pred cccccCCCeeeee
Q 039270 117 QWLRTLEPILWDF 129 (131)
Q Consensus 117 dWL~~~~pi~idw 129 (131)
|+|.+.+. .++|
T Consensus 88 nlLtqlG~-tLnf 99 (99)
T 3ec0_A 88 NILTALGM-SLNL 99 (99)
T ss_dssp HHHHHHTC-EEEC
T ss_pred hhHhhcCc-EEeC
Confidence 99999998 5664
No 5
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.09 E-value=2.6e-05 Score=53.50 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=59.3
Q ss_pred EEEEEEECCeeeEEEEeCCCccccccceeE----------------eeeeeeeeEEEECcEEEEeeeEEecCCCcceeec
Q 039270 52 MRINGRIGNISPIVLVDSGSTRNFMSEQFY----------------STRKCTNVNLILQGVSVIVDFNLRDLEGYDVVLG 115 (131)
Q Consensus 52 ~rv~~~I~~~~v~aLIDSGsThnFIs~~~a----------------~~g~~~~~~~~i~g~~f~~df~vl~l~~~DvILG 115 (131)
-.+..+|+|+...+|+|+||-++.++..-. ....+..+++++.|+.....++|-|.- . =|+|
T Consensus 9 P~vtvkI~Gq~~eaLLDTGAD~TVl~~~~~p~~wkpk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV~~tP-v-niiG 86 (99)
T 2hs1_A 9 PLVTIKIGGQLKEALLDTGADDTIIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPTP-V-NIIG 86 (99)
T ss_dssp CEEEEEETTEEEEEEECTTCSSEEESCCSSCCCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCCS-S-CEEC
T ss_pred CEEEEEECCEEEEEEeccCCCcEEEecccCCCCCCCcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEeCCCc-c-Cchh
Confidence 357789999999999999999999985433 123567889999999999988885532 3 3789
Q ss_pred ccccccCCCeeeee
Q 039270 116 TQWLRTLEPILWDF 129 (131)
Q Consensus 116 ~dWL~~~~pi~idw 129 (131)
.|||.+.+- .+||
T Consensus 87 Rd~Ltqlg~-tLnf 99 (99)
T 2hs1_A 87 RNLLTQIGA-TLNF 99 (99)
T ss_dssp HHHHTTTTC-EEEC
T ss_pred HhHHHHcCC-EEeC
Confidence 999999988 5664
No 6
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=97.92 E-value=2.7e-05 Score=53.73 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=59.0
Q ss_pred eEEEEEEECCeeeEEEEeCCCccccccc----e-------eE----------eeeeeeeeEEEECcEEEEeeeEEecCCC
Q 039270 51 TMRINGRIGNISPIVLVDSGSTRNFMSE----Q-------FY----------STRKCTNVNLILQGVSVIVDFNLRDLEG 109 (131)
Q Consensus 51 t~rv~~~I~~~~v~aLIDSGsThnFIs~----~-------~a----------~~g~~~~~~~~i~g~~f~~df~vl~l~~ 109 (131)
...+..+|+|+...+|+|+||-.+.++. + .. ...++..+++++.|+.....++|-+.
T Consensus 8 RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p~~i~GiGG~i~v~~~~i~i~i~g~~~~gtvlv~~t-- 85 (104)
T 1fmb_A 8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQGTGIGGVGGNVETFSTPVTIKKKGRHIKTRMLVADI-- 85 (104)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEECCCEEETTEEECCEEEEEEEEETTEEEEEEEEEESC--
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCccEEEeCCCeEEeeEeeeEEEECCeEEEEEEEECCC--
Confidence 3457899999999999999999999992 1 11 11126788999999999888888663
Q ss_pred cceeecccccccCCCeeeee
Q 039270 110 YDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 110 ~DvILG~dWL~~~~pi~idw 129 (131)
..=|+|.|||.+.+- .+||
T Consensus 86 p~niiGRd~L~qlg~-tLnf 104 (104)
T 1fmb_A 86 PVTILGRDILQDLGA-KLVL 104 (104)
T ss_dssp SSCEECHHHHHHTTC-CCCC
T ss_pred CCCEecHhHHhhcCc-EEeC
Confidence 346889999999987 4553
No 7
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=97.57 E-value=0.00047 Score=52.74 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=59.8
Q ss_pred EEEEEEECCeeeEEEEeCCCcccccccee---------E-------eeeeeeeeEEEECcEEEEeeeEEecCCCcceeec
Q 039270 52 MRINGRIGNISPIVLVDSGSTRNFMSEQF---------Y-------STRKCTNVNLILQGVSVIVDFNLRDLEGYDVVLG 115 (131)
Q Consensus 52 ~rv~~~I~~~~v~aLIDSGsThnFIs~~~---------a-------~~g~~~~~~~~i~g~~f~~df~vl~l~~~DvILG 115 (131)
..+..+|+|+++.+|+|+||.++.+...- . ....+..+++++.|+.....++|-+. ..=|+|
T Consensus 9 P~vtv~I~Gq~~e~LLDTGAD~TVl~~~~lpg~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlVg~t--PvnIiG 86 (203)
T 3ka2_A 9 PLVTIRIGGQLKEALLDTGADDTVIEELNLPGXWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLVGPT--PVNIIG 86 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEECSCCCSSCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCC--SSCEEC
T ss_pred CeEEEEECCEEEEEEEecCCCceEEecccCCCCCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEeeCCC--CcCccc
Confidence 46789999999999999999999986321 1 12345678999999998888888553 344899
Q ss_pred ccccccCCCeeeeec
Q 039270 116 TQWLRTLEPILWDFA 130 (131)
Q Consensus 116 ~dWL~~~~pi~idw~ 130 (131)
.|.|.+.+- .+|+.
T Consensus 87 Rd~LtqlG~-tLnf~ 100 (203)
T 3ka2_A 87 RNLLTQIGX-TLNFX 100 (203)
T ss_dssp HHHHTTTTC-EEEGG
T ss_pred hhhhhhcCc-eEEec
Confidence 999999998 67764
No 8
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=97.36 E-value=0.00073 Score=47.43 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=53.0
Q ss_pred EEECCeeeEEEEeCCCccccccce-e------------E-------eeeeeeeeEEEECcEE-----EEeeeEEec-CCC
Q 039270 56 GRIGNISPIVLVDSGSTRNFMSEQ-F------------Y-------STRKCTNVNLILQGVS-----VIVDFNLRD-LEG 109 (131)
Q Consensus 56 ~~I~~~~v~aLIDSGsThnFIs~~-~------------a-------~~g~~~~~~~~i~g~~-----f~~df~vl~-l~~ 109 (131)
.+|+|+.+.+|+|+||-++.++.. + . ....+..+.+++.++. ....++|.| .-.
T Consensus 18 ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~~gtvlV~p~tP~ 97 (116)
T 2hah_A 18 IFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNST 97 (116)
T ss_dssp EEETTEEEEEEECTTCSSCEEEGGGCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEEEEEEEEETTCCC
T ss_pred EEECCEEEEEEecCCCCcEEEcccccccCCCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCcceeEEEEEECCCCCc
Confidence 999999999999999999988763 2 1 1124567888888877 777888887 431
Q ss_pred cceeecccccccCCC
Q 039270 110 YDVVLGTQWLRTLEP 124 (131)
Q Consensus 110 ~DvILG~dWL~~~~p 124 (131)
-==|+|.|||.+.+-
T Consensus 98 ~vniiGRd~Ltqlg~ 112 (116)
T 2hah_A 98 PVNILGRDNMIKFNI 112 (116)
T ss_dssp SSEEECHHHHTTTTC
T ss_pred cccEecHHHHhHcCC
Confidence 124789999999886
No 9
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=96.84 E-value=0.0083 Score=45.79 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=58.5
Q ss_pred EEEEEEECCeeeEEEEeCCCccccccceeE----------------eeeeeeeeEEEECcEEEEeeeEEecCCCcceeec
Q 039270 52 MRINGRIGNISPIVLVDSGSTRNFMSEQFY----------------STRKCTNVNLILQGVSVIVDFNLRDLEGYDVVLG 115 (131)
Q Consensus 52 ~rv~~~I~~~~v~aLIDSGsThnFIs~~~a----------------~~g~~~~~~~~i~g~~f~~df~vl~l~~~DvILG 115 (131)
-.+..+++|+.+.+|+|+||-++.+...-. ...++..+++++.|+.....++|-|. .+. |+|
T Consensus 113 P~~~iki~Gq~~e~LlDTGAD~TVl~~~~lpg~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlVgpt-Pvn-iiG 190 (203)
T 3ka2_A 113 PLVTIRIGGQLKEALLDTGADDTVIEELNLPGXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLVGPT-PVN-IIG 190 (203)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEECSCCCCSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEESCC-SSC-EEC
T ss_pred CcEEEEECCEEEeeeecccCCceeeecccCCCCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEECCC-CcC-eec
Confidence 457899999999999999999999974322 12245678899999998888888774 344 569
Q ss_pred ccccccCCCeeeee
Q 039270 116 TQWLRTLEPILWDF 129 (131)
Q Consensus 116 ~dWL~~~~pi~idw 129 (131)
.|-|.+.+- .++|
T Consensus 191 Rn~LtqlG~-tl~f 203 (203)
T 3ka2_A 191 RNLLTQIGX-TLNF 203 (203)
T ss_dssp HHHHGGGTC-EEEC
T ss_pred hhhHHHhCC-eeeC
Confidence 999999998 5654
No 10
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=95.05 E-value=0.1 Score=37.69 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=32.4
Q ss_pred eeEEEECcEEEEeeeEEecCC--CcceeecccccccCCCeeee
Q 039270 88 NVNLILQGVSVIVDFNLRDLE--GYDVVLGTQWLRTLEPILWD 128 (131)
Q Consensus 88 ~~~~~i~g~~f~~df~vl~l~--~~DvILG~dWL~~~~pi~id 128 (131)
...+.+++..+.+.|-+.+=. .|.++||-.||+..+- .+|
T Consensus 95 ~~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~-lVD 136 (146)
T 2pma_A 95 LLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNG-AVD 136 (146)
T ss_dssp EEEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTE-EEE
T ss_pred EEEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCE-EEC
Confidence 457788999999999998854 7999999999987654 344
No 11
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=94.83 E-value=0.08 Score=36.88 Aligned_cols=75 Identities=7% Similarity=0.050 Sum_probs=47.7
Q ss_pred EEEEEECCeeeEEEEeCCCccccccceeE--------------------eeeeeeeeE-EE-ECcEEEEeeeEEecCCCc
Q 039270 53 RINGRIGNISPIVLVDSGSTRNFMSEQFY--------------------STRKCTNVN-LI-LQGVSVIVDFNLRDLEGY 110 (131)
Q Consensus 53 rv~~~I~~~~v~aLIDSGsThnFIs~~~a--------------------~~g~~~~~~-~~-i~g~~f~~df~vl~l~~~ 110 (131)
.+..+|+|+.+.+|+|+||-.+.+...-. ...++..+. ++ +.|+.-....+|++--..
T Consensus 11 ~vti~I~Gq~~eaLLDTGADdTVi~~~~lpg~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i~tvlV~~ptPv 90 (114)
T 3sqf_A 11 SLTLWLDDKMFTGLINTGADVTIIKLEDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPFVIPNLPV 90 (114)
T ss_dssp EEEEEETTEEEEEEECTTCSSCEEEGGGSCTTSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEEECCEEETTCSS
T ss_pred eEEEEECCEEEEEEEccCCCceEEecccCCCCcccCcCceEEEeccceEEEEEeccceEEEecCCCEEEEEEEECCCCcc
Confidence 46789999999999999998888853222 011222232 23 577776666677643344
Q ss_pred ceeecccccccCCCeeeee
Q 039270 111 DVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 111 DvILG~dWL~~~~pi~idw 129 (131)
. |+|.+-|.+.+- ..++
T Consensus 91 N-IiGRn~LtqlG~-tLnf 107 (114)
T 3sqf_A 91 N-LWGRDLLSQMKI-MMAS 107 (114)
T ss_dssp C-EECHHHHTTSCC-----
T ss_pred c-EEchhhHhhcCc-EEEC
Confidence 4 469999999987 4554
No 12
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=94.17 E-value=0.057 Score=38.15 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=46.1
Q ss_pred ECCeeeEEEEeCCCccccccceeE---------------------eeeeee-eeEEEECcE--EEEeeeEEecCC--Ccc
Q 039270 58 IGNISPIVLVDSGSTRNFMSEQFY---------------------STRKCT-NVNLILQGV--SVIVDFNLRDLE--GYD 111 (131)
Q Consensus 58 I~~~~v~aLIDSGsThnFIs~~~a---------------------~~g~~~-~~~~~i~g~--~f~~df~vl~l~--~~D 111 (131)
|+|+...+|+|+||-++++...-. ...++. .+++++-|+ .....+.|.|.- -.-
T Consensus 27 i~gq~~eaLLDTGAD~TVl~~~~lP~~W~k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~~g~~~~tvlV~P~~~~tPv 106 (124)
T 2rsp_A 27 QRSVYITALLDSGADITIISEEDWPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPAVAMVRG 106 (124)
T ss_dssp CSEEEEEEEECTTCSSCEEETTTSCTTSCEEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCEEESCSS
T ss_pred CCCEEEEEEecCCCCcEEEecccCCCcceeeccccceeeecCceEeeEEeCCceEEEEeCCCCcEEEEEEECcCCCCCce
Confidence 888999999999999988864322 011233 555666555 444456665620 123
Q ss_pred eeecccccccCCCeeee
Q 039270 112 VVLGTQWLRTLEPILWD 128 (131)
Q Consensus 112 vILG~dWL~~~~pi~id 128 (131)
=|+|.|.|.+.+-...|
T Consensus 107 nIiGRdlLtqlG~tL~N 123 (124)
T 2rsp_A 107 SILGRDCLQGLGLRLTN 123 (124)
T ss_dssp EEECHHHHHHTTCEEEC
T ss_pred eEECHhHHhhCCcEEec
Confidence 47899999999886544
No 13
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=93.90 E-value=0.32 Score=33.07 Aligned_cols=67 Identities=22% Similarity=0.312 Sum_probs=49.2
Q ss_pred EEEEECCeeeEEEEeCCCccccccceeE-------------eeee----eeeeEEEECcEEEEeeeEEecCCCcceee--
Q 039270 54 INGRIGNISPIVLVDSGSTRNFMSEQFY-------------STRK----CTNVNLILQGVSVIVDFNLRDLEGYDVVL-- 114 (131)
Q Consensus 54 v~~~I~~~~v~aLIDSGsThnFIs~~~a-------------~~g~----~~~~~~~i~g~~f~~df~vl~l~~~DvIL-- 114 (131)
+.+.|.|..+.+--||||+...|-..|. ..|. .-=+.++++|+...+.....+ ||.||
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~E~PI~~~~I~TIHG~k~q~vYYl~fKv~GRKveaEVi~sp---~dYvli~ 86 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLEDERPIQTMLIKTIHGEKQQDVYYLTFKVQGRKVEAEVLASP---YDYILLN 86 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTTCCCSEEEEEECSSCEEEEEEEEEEEEESSCEEEEEEEEES---SSSEEEC
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcccccccceEEEEecCceeceEEEEEEEEcCeEEEEEEecCc---ccEEEEc
Confidence 6788999999999999999999988887 1122 123578889988877776666 44444
Q ss_pred --cccccccCC
Q 039270 115 --GTQWLRTLE 123 (131)
Q Consensus 115 --G~dWL~~~~ 123 (131)
-++|+.+..
T Consensus 87 P~DiPW~~~~p 97 (107)
T 2jys_A 87 PSDVPWLMKKP 97 (107)
T ss_dssp TTTCHHHHSCC
T ss_pred CcCccccccCc
Confidence 357887543
No 14
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=77.86 E-value=2.3 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=22.8
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 43 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPS 43 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeE
Confidence 355678888 7899999999999988753
No 15
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=74.22 E-value=19 Score=28.48 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.5
Q ss_pred eEEEEEEECC--eeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIGN--ISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~~--~~v~aLIDSGsThnFIs 77 (131)
...+...|+. +++.+++|+||+.-++.
T Consensus 57 ~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~ 85 (370)
T 3psg_A 57 EYFGTIGIGTPAQDFTVIFDTGSSNLWVP 85 (370)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCCEEEEEEeCCCCccEEE
Confidence 4567888885 89999999999988875
No 16
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=73.64 E-value=4.1 Score=33.69 Aligned_cols=77 Identities=16% Similarity=0.314 Sum_probs=50.1
Q ss_pred EEEEEEECC---eeeEEEEeCCCccccccceeE---------------------ee-eeeeeeEEEECcEEEEeee--E-
Q 039270 52 MRINGRIGN---ISPIVLVDSGSTRNFMSEQFY---------------------ST-RKCTNVNLILQGVSVIVDF--N- 103 (131)
Q Consensus 52 ~rv~~~I~~---~~v~aLIDSGsThnFIs~~~a---------------------~~-g~~~~~~~~i~g~~f~~df--~- 103 (131)
+.+...+++ ....++||||++..++..+.+ |. ...+.+.+.++|..+.... +
T Consensus 318 v~l~I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi 397 (451)
T 3qvc_A 318 VDLDVHFGNVSSKKANVILDSATSVITVPTEFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYL 397 (451)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECTTSSCEEEETTCTTCCCEEEEETTEEEEECHHHHE
T ss_pred EEEEEEECCccCCCceEEEeCCCccccCCHHHHHHHHHHcCCeecCCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhe
Confidence 444455666 356799999999988887766 22 2235677888887664321 1
Q ss_pred --------------EecCC--CcceeecccccccCCCeeeee
Q 039270 104 --------------LRDLE--GYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 104 --------------vl~l~--~~DvILG~dWL~~~~pi~idw 129 (131)
+.+.. +-..|||..+|+.+-- ..|+
T Consensus 398 ~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~Yv-VfD~ 438 (451)
T 3qvc_A 398 EPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFT-VYDY 438 (451)
T ss_dssp EECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEE-EEET
T ss_pred eecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEE-EEEC
Confidence 12222 3458999999998766 3554
No 17
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=72.99 E-value=2.3 Score=29.52 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=21.6
Q ss_pred EEEEEEC-----CeeeEEEEeCCCccccccc
Q 039270 53 RINGRIG-----NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 53 rv~~~I~-----~~~v~aLIDSGsThnFIs~ 78 (131)
.+..+|+ |+.+.+|+|+||-...+..
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~ 42 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPI 42 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEG
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEec
Confidence 4577788 9999999999998877764
No 18
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=72.65 E-value=18 Score=27.92 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 42 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGA 42 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECS
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecC
Confidence 456778888 7899999999999988764
No 19
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=71.98 E-value=4 Score=31.51 Aligned_cols=73 Identities=12% Similarity=0.189 Sum_probs=46.5
Q ss_pred EEECCeee------EEEEeCCCccccccceeE--------------------ee--eeeeeeEEEECcEEEEee------
Q 039270 56 GRIGNISP------IVLVDSGSTRNFMSEQFY--------------------ST--RKCTNVNLILQGVSVIVD------ 101 (131)
Q Consensus 56 ~~I~~~~v------~aLIDSGsThnFIs~~~a--------------------~~--g~~~~~~~~i~g~~f~~d------ 101 (131)
..++++.+ .++||||++..++..+.. |. ...+.+.+.++|..+...
T Consensus 198 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~ 277 (323)
T 3cms_A 198 VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLTPSAYTS 277 (323)
T ss_dssp EEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEEEECTTCTTTSCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcEEEECCCCccCceEEEEECCEEEEECHHHhcc
Confidence 44676543 699999999888776655 22 123567888888766432
Q ss_pred -----eE--EecC-CCcceeecccccccCCCeeeee
Q 039270 102 -----FN--LRDL-EGYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 102 -----f~--vl~l-~~~DvILG~dWL~~~~pi~idw 129 (131)
++ +.+. .+-..|||..+|+.+-- ..|+
T Consensus 278 ~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~-vfD~ 312 (323)
T 3cms_A 278 QDQGFCTSGFQSENHSQKWILGDVFIREYYS-VFDR 312 (323)
T ss_dssp EETTEEEESEEEC---CCEEECHHHHTTEEE-EEET
T ss_pred CCCCEEEEEEEeCCCCCcEEECHHHhhceEE-EEEC
Confidence 11 2233 24568999999998765 3554
No 20
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=71.66 E-value=4.2 Score=29.95 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=45.6
Q ss_pred EEECCee------eEEEEeCCCccccccceeE--------------------eee--eeeeeEEEECcEEEEee------
Q 039270 56 GRIGNIS------PIVLVDSGSTRNFMSEQFY--------------------STR--KCTNVNLILQGVSVIVD------ 101 (131)
Q Consensus 56 ~~I~~~~------v~aLIDSGsThnFIs~~~a--------------------~~g--~~~~~~~~i~g~~f~~d------ 101 (131)
..++++. ..++||||++..++..+.. |.. ..+.+.+.++|..+...
T Consensus 108 i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~ 187 (241)
T 1lya_B 108 VEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTL 187 (241)
T ss_dssp EEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEETTEEEEEGGGGGGSCCEEEEETTEEEEECTTTSEE
T ss_pred EEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeeccCCcEEEECCCCccCCeEEEEECCEEEEECHHHhEE
Confidence 4466654 4699999999988777665 221 23566777777655321
Q ss_pred ---------eE--EecC-----CCcceeecccccccCCCeeeee
Q 039270 102 ---------FN--LRDL-----EGYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 102 ---------f~--vl~l-----~~~DvILG~dWL~~~~pi~idw 129 (131)
++ +.+. .+-..|||..+|+.+-- ..|+
T Consensus 188 ~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~-vfD~ 230 (241)
T 1lya_B 188 KVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYT-VFDR 230 (241)
T ss_dssp EETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEE-EEET
T ss_pred EccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEE-EEEC
Confidence 11 1222 23468999999998765 3554
No 21
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=71.60 E-value=3 Score=32.48 Aligned_cols=74 Identities=20% Similarity=0.378 Sum_probs=46.1
Q ss_pred EEEECC-eee----EEEEeCCCccccccceeE---------------------ee--eeeeeeEEEECcEEEEee-----
Q 039270 55 NGRIGN-ISP----IVLVDSGSTRNFMSEQFY---------------------ST--RKCTNVNLILQGVSVIVD----- 101 (131)
Q Consensus 55 ~~~I~~-~~v----~aLIDSGsThnFIs~~~a---------------------~~--g~~~~~~~~i~g~~f~~d----- 101 (131)
...+++ +.+ .++||||++..++..+.. |. ...+.+.+.++|..+...
T Consensus 194 ~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~~~yi 273 (340)
T 1wkr_A 194 SIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQI 273 (340)
T ss_dssp EEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHHHHHTCEECTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGB
T ss_pred eEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHHHhhCCEEcCCCCeEEeeccccccCCcEEEEECCEEEEEcHHHhc
Confidence 345776 544 699999999988877655 11 112566778888766431
Q ss_pred -----------------eEEecCC-----CcceeecccccccCCCeeeee
Q 039270 102 -----------------FNLRDLE-----GYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 102 -----------------f~vl~l~-----~~DvILG~dWL~~~~pi~idw 129 (131)
+.+.+++ +...|||..+|+.+-- ..|+
T Consensus 274 ~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~-vfD~ 322 (340)
T 1wkr_A 274 WPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYS-VYDT 322 (340)
T ss_dssp CCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEE-EEET
T ss_pred cccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEE-EEeC
Confidence 1122222 2347999999998765 3554
No 22
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=71.58 E-value=24 Score=27.06 Aligned_cols=28 Identities=18% Similarity=0.400 Sum_probs=23.6
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 42 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVD 42 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEec
Confidence 456778888 6899999999999999864
No 23
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=71.14 E-value=17 Score=29.94 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=22.7
Q ss_pred EEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 52 MRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 52 ~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
..+...|+ .+++.+++|+||+.-++..
T Consensus 139 Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s 167 (451)
T 3qvc_A 139 SFGEAKLGDNGQKFNFLFHTASSNVWVPS 167 (451)
T ss_dssp EEEEEEETTTTEEEEEEEESSBCSEEEEB
T ss_pred EEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 55678888 6899999999999988854
No 24
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=70.94 E-value=4.9 Score=30.81 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=47.0
Q ss_pred EEECCee------eEEEEeCCCccccccceeE--------------------eee--eeeeeEEEECcEEEEeee-----
Q 039270 56 GRIGNIS------PIVLVDSGSTRNFMSEQFY--------------------STR--KCTNVNLILQGVSVIVDF----- 102 (131)
Q Consensus 56 ~~I~~~~------v~aLIDSGsThnFIs~~~a--------------------~~g--~~~~~~~~i~g~~f~~df----- 102 (131)
..++++. ..++||||++..++..+.. |.. ..+.+.+.++|..+....
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~ 274 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEINGRDYPLSPSAYTS 274 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCEEECGGGGGGCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcEEEeCCCCCcCceEEEEECCEEEEECHHHhcc
Confidence 3466643 4699999999988877665 222 235677888887764321
Q ss_pred ------E--EecC-CCcceeecccccccCCCeeeee
Q 039270 103 ------N--LRDL-EGYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 103 ------~--vl~l-~~~DvILG~dWL~~~~pi~idw 129 (131)
+ +.+. .+-..|||..||+.+-- ..|+
T Consensus 275 ~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~-vfD~ 309 (320)
T 4aa9_A 275 KDQGFCTSGFQGDNNSELWILGDVFIREYYS-VFDR 309 (320)
T ss_dssp EETTEEEESEEEETTCCCEEECHHHHTTEEE-EEET
T ss_pred CCCCeEEEEEEcCCCCCcEEEChHHhcceEE-EEEC
Confidence 1 1111 23358999999998766 3555
No 25
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=70.06 E-value=3.1 Score=32.20 Aligned_cols=73 Identities=21% Similarity=0.369 Sum_probs=46.5
Q ss_pred EEECCee-------eEEEEeCCCccccccceeE--------------------eee--eeeeeEEEECcEEEEee-----
Q 039270 56 GRIGNIS-------PIVLVDSGSTRNFMSEQFY--------------------STR--KCTNVNLILQGVSVIVD----- 101 (131)
Q Consensus 56 ~~I~~~~-------v~aLIDSGsThnFIs~~~a--------------------~~g--~~~~~~~~i~g~~f~~d----- 101 (131)
..++++. ..++||||++..++..+.. |.. ..+.+.+.++|..+...
T Consensus 198 i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~g~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~ 277 (329)
T 1htr_B 198 FLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYI 277 (329)
T ss_dssp EEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECTTSCEEECGGGGGGSCCEEEEETTEEEEECHHHHE
T ss_pred EEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeecCCCeEEEeCCCcccCCcEEEEECCEEEEECHHHhc
Confidence 4466654 4699999999988877766 221 23567788888766432
Q ss_pred ------eE--EecC-----CCc-ceeecccccccCCCeeeee
Q 039270 102 ------FN--LRDL-----EGY-DVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 102 ------f~--vl~l-----~~~-DvILG~dWL~~~~pi~idw 129 (131)
++ +.+. .+- ..|||..+|+.+-- ..|+
T Consensus 278 ~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yv-vfD~ 318 (329)
T 1htr_B 278 LSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYS-VYDL 318 (329)
T ss_dssp EECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEE-EEET
T ss_pred ccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEE-EEEC
Confidence 11 1121 122 58999999998765 3554
No 26
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=69.26 E-value=22 Score=28.41 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=22.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
.-.+...|+ .+++.+++|+||+.-++..
T Consensus 62 ~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s 91 (383)
T 2x0b_A 62 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPS 91 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEec
Confidence 455677787 5899999999999988743
No 27
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=66.66 E-value=24 Score=29.14 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 139 ~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~ 168 (453)
T 2bju_A 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPS 168 (453)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCeEEEEEEECCCcceEEec
Confidence 455678888 7999999999999988743
No 28
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=66.01 E-value=12 Score=29.63 Aligned_cols=26 Identities=19% Similarity=0.440 Sum_probs=21.4
Q ss_pred EEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 52 MRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 52 ~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
..+...|+ .+++.+++|+||+..++.
T Consensus 64 Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~ 91 (375)
T 1miq_A 64 FYGEGEVGDNHQKFMLIFDTGSANLWVP 91 (375)
T ss_dssp EECCCEETTTTEECCEEEETTCCCEEEE
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEc
Confidence 44567788 789999999999998874
No 29
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=61.36 E-value=33 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~ 104 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 104 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEec
Confidence 456788898 6999999999999988853
No 30
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=59.64 E-value=8.6 Score=30.56 Aligned_cols=77 Identities=16% Similarity=0.347 Sum_probs=47.0
Q ss_pred EEEEEEECCe---eeEEEEeCCCccccccceeE---------------------eee-eeeeeEEEECcEEEEee-----
Q 039270 52 MRINGRIGNI---SPIVLVDSGSTRNFMSEQFY---------------------STR-KCTNVNLILQGVSVIVD----- 101 (131)
Q Consensus 52 ~rv~~~I~~~---~v~aLIDSGsThnFIs~~~a---------------------~~g-~~~~~~~~i~g~~f~~d----- 101 (131)
+.+...|+++ ...++||||++..++..+.. |.. ..+.+.+.++|..+...
T Consensus 243 v~l~i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~g~~~~~C~~~~~P~i~f~f~g~~~~l~~~~yi 322 (375)
T 1miq_A 243 IDLDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322 (375)
T ss_dssp EEEEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTCTTCCCEEEECSSCEEEECGGGSE
T ss_pred EEEEEEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCcccCCCCeEEEECCCCCCCcEEEEECCEEEEECHHHhE
Confidence 4444667775 45799999999887776655 221 23556677776554321
Q ss_pred ----------eE--EecCC--CcceeecccccccCCCeeeee
Q 039270 102 ----------FN--LRDLE--GYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 102 ----------f~--vl~l~--~~DvILG~dWL~~~~pi~idw 129 (131)
++ +.+.. .-..|||..+|+.+-- ..|+
T Consensus 323 ~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yv-vfD~ 363 (375)
T 1miq_A 323 NPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFT-VFDY 363 (375)
T ss_dssp EESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEE-EEET
T ss_pred eeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEE-EEEC
Confidence 11 12222 1457999999987765 3554
No 31
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=59.47 E-value=8 Score=29.85 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=23.4
Q ss_pred eEEEEEEECCeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIGNISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+.+++.+++|+||+..++..
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 43 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEec
Confidence 3556788899999999999999988753
No 32
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=58.78 E-value=8.3 Score=29.80 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=23.4
Q ss_pred eEEEEEEECCeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIGNISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+.+++.+++|+||+..++..
T Consensus 16 ~Y~~~i~iG~q~~~v~~DTGSs~lWv~~ 43 (323)
T 1izd_A 16 EYITQVTVGDDTLGLDFDTGSADLWVFS 43 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCEEEEEEEcCCCcceEEec
Confidence 3556788889999999999999988753
No 33
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=57.86 E-value=8.8 Score=29.76 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=21.7
Q ss_pred EEEEEEECCeeeEEEEeCCCcccccc
Q 039270 52 MRINGRIGNISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 52 ~rv~~~I~~~~v~aLIDSGsThnFIs 77 (131)
..+...|+.+++.+++|+||+..++.
T Consensus 19 Y~~~i~iG~Q~~~v~~DTGSs~lWv~ 44 (330)
T 1yg9_A 19 YAGITKIGNQNFLTVFDSTSCNVVVA 44 (330)
T ss_dssp SEEEEEETTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEECCEEEEEEEeCCCcceEEe
Confidence 34567788999999999999988874
No 34
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=56.38 E-value=8.8 Score=29.63 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=23.1
Q ss_pred eEEEEEEECCeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIGNISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+.+++.+++|+||+..++..
T Consensus 15 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~ 42 (325)
T 1ibq_A 15 EYLTPVTVGKSTLHLDFDTGSADLWVFS 42 (325)
T ss_dssp CEEEEEEEBTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCEEEEEEEeCCCccceEee
Confidence 3556778889999999999999988753
No 35
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=54.09 E-value=12 Score=27.74 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.5
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
...+...|+ .+++.+++|+||+.-++.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVP 42 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEE
Confidence 455678888 689999999999998874
No 36
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=53.86 E-value=11 Score=28.96 Aligned_cols=28 Identities=18% Similarity=0.139 Sum_probs=23.2
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 16 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 45 (325)
T 2apr_A 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIAS 45 (325)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCEEEcc
Confidence 455678888 8999999999999988753
No 37
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=50.22 E-value=14 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 1oew_A 16 AYITPVQIGTPAQTLNLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEECCCCCCeEEec
Confidence 355678888 7999999999999988753
No 38
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=49.65 E-value=14 Score=28.71 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
...+...|+ .+++.+++|+||+..++.
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 47 (361)
T 1mpp_A 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVP 47 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCCCeEEC
Confidence 455678888 799999999999998874
No 39
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=49.49 E-value=14 Score=28.49 Aligned_cols=29 Identities=28% Similarity=0.433 Sum_probs=23.8
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccce
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSEQ 79 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~~ 79 (131)
...+...|+ .+++.+++|+||+..++...
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~ 43 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIPDS 43 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecC
Confidence 455678888 79999999999999998533
No 40
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=49.44 E-value=15 Score=28.42 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+.-++..
T Consensus 16 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 45 (329)
T 3c9x_A 16 EYITSVSIGTPAQVLPLDFDTGSSDLWVFS 45 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEcCCCCCeEEec
Confidence 345678888 7999999999999988753
No 41
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=48.32 E-value=16 Score=28.14 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
...+...|+ .+++.+++|+||+..++.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~ 42 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVP 42 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEe
Confidence 455678888 689999999999998874
No 42
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=48.20 E-value=16 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=23.5
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVVD 42 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEec
Confidence 456678888 7999999999999999854
No 43
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=48.07 E-value=8.9 Score=29.64 Aligned_cols=68 Identities=13% Similarity=0.157 Sum_probs=43.3
Q ss_pred eeeEEEEeCCCccccccceeE----------------------eeeeeeeeEEEECcEEEEee-------------eE--
Q 039270 61 ISPIVLVDSGSTRNFMSEQFY----------------------STRKCTNVNLILQGVSVIVD-------------FN-- 103 (131)
Q Consensus 61 ~~v~aLIDSGsThnFIs~~~a----------------------~~g~~~~~~~~i~g~~f~~d-------------f~-- 103 (131)
....++||||++..++..+.+ |....+.+.+.++|..+... ++
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~~~ 286 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQTFGG 286 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEEEES
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHhCCCcEEcCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCeEEEE
Confidence 446799999999887766554 22233667788888766432 11
Q ss_pred EecCC-CcceeecccccccCCCeeeee
Q 039270 104 LRDLE-GYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 104 vl~l~-~~DvILG~dWL~~~~pi~idw 129 (131)
+.+.. +-..|||..+|+.+-- ..|+
T Consensus 287 i~~~~~~~~~IlG~~fl~~~y~-vfD~ 312 (323)
T 1izd_A 287 IQSNSGIGFSIFGDVFLKSQYV-VFDA 312 (323)
T ss_dssp EEECTTTSSEEECHHHHTTEEE-EEET
T ss_pred EEcCCCCCcEEEChHHhcCEEE-EEEC
Confidence 12222 3457999999998765 3554
No 44
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=47.01 E-value=16 Score=28.85 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+.-++..
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~ 51 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 51 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEEC
Confidence 455678888 7999999999999998854
No 45
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=45.96 E-value=18 Score=27.55 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=22.0
Q ss_pred EEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 52 MRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 52 ~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
..+...|+ .+++.+++|+||+..++..
T Consensus 13 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~ 41 (320)
T 4aa9_A 13 YFGKIYIGTPPQEFTVVFDTGSSDLWVPS 41 (320)
T ss_dssp CEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEECCCCeEEEEEEeCCCCceEEcC
Confidence 45677787 5899999999999988853
No 46
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=45.31 E-value=18 Score=27.71 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.3
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVPD 42 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEEc
Confidence 456678888 6899999999999999853
No 47
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=44.96 E-value=18 Score=28.29 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=23.0
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+.-++..
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 43 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAG 43 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEec
Confidence 355778888 6899999999999988753
No 48
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=44.17 E-value=34 Score=22.48 Aligned_cols=55 Identities=13% Similarity=0.085 Sum_probs=32.2
Q ss_pred CccCCCCCCcccCChHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCee
Q 039270 7 TTYRNSSIPVRRLSRTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNIS 62 (131)
Q Consensus 7 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~~ 62 (131)
.++..+..+-.....+.+||-|.++....|...+-. .|-...+.+.+.+.|+++.
T Consensus 6 ~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~-~Gp~H~~~F~~~V~v~g~~ 60 (103)
T 2l2n_A 6 STDVSSGVSNCYVFKSRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVILDGVR 60 (103)
T ss_dssp -------------CTTHHHHHHHHTTCCCCEEEEEE-ESCSSSCEEEEEEEETTEE
T ss_pred hhhhccccCCCCCHHHHHHHHHHHcCCCCCeEEEEe-EcCCCCCeEEEEEEECCEE
Confidence 345556666677778889999988766666665544 3777778999999999853
No 49
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=43.47 E-value=21 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=22.2
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
...+...|+ .+++.+++|+||+..++.
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 43 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVP 43 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEc
Confidence 455677888 589999999999998875
No 50
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=42.50 E-value=22 Score=27.30 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+.-++..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~ 42 (329)
T 1htr_B 13 AYFGEISIGTPPQNFLVLFDTGSSNLWVPS 42 (329)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEB
T ss_pred EEEEEEEECCCCcEEEEEEcCCCccEEEec
Confidence 455677888 5899999999999988753
No 51
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=42.33 E-value=21 Score=28.18 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 29 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~ 58 (402)
T 3vf3_A 29 GYYVEMTVGSPPQTLNILVDTGSSNFAVGA 58 (402)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcc
Confidence 466788888 7999999999999988843
No 52
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=42.31 E-value=22 Score=27.20 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=22.5
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCccccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs~ 78 (131)
...+...|+ .+++.+++|+||+..++..
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~ 42 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSS 42 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECB
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEec
Confidence 445677887 5899999999999988753
No 53
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=42.27 E-value=15 Score=28.29 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=42.8
Q ss_pred eeeEEEEeCCCccccccceeE----------------------eeeeeeeeEEEECcEEEEee--------------eE-
Q 039270 61 ISPIVLVDSGSTRNFMSEQFY----------------------STRKCTNVNLILQGVSVIVD--------------FN- 103 (131)
Q Consensus 61 ~~v~aLIDSGsThnFIs~~~a----------------------~~g~~~~~~~~i~g~~f~~d--------------f~- 103 (131)
....++||||++..++..+.+ |....+.+.+.++|..+... ++
T Consensus 206 ~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~C~~ 285 (323)
T 1bxo_A 206 DGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLINYGPSGDGSTCLG 285 (323)
T ss_dssp EEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHEEEECSSSSCEEE
T ss_pred CCceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECCCCCceEEEEECCEEEEECHHHeEEeccCCCCeEEE
Confidence 345799999999887766554 32233667788888765422 11
Q ss_pred -EecCC-CcceeecccccccCCCeeeee
Q 039270 104 -LRDLE-GYDVVLGTQWLRTLEPILWDF 129 (131)
Q Consensus 104 -vl~l~-~~DvILG~dWL~~~~pi~idw 129 (131)
+.+.. +-..|||..||+.+-- ..|+
T Consensus 286 ~i~~~~~~~~~ILG~~fl~~~y~-vfD~ 312 (323)
T 1bxo_A 286 GIQSNSGIGFSIFGDIFLKSQYV-VFDS 312 (323)
T ss_dssp SEEECTTCSSEEECHHHHTTEEE-EEET
T ss_pred EEECCCCCCcEEEChHHHcCEEE-EEEC
Confidence 11222 2357999999988765 3554
No 54
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=41.98 E-value=26 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=24.2
Q ss_pred CeEEEEEEEC--CeeeEEEEeCCCccccccce
Q 039270 50 ETMRINGRIG--NISPIVLVDSGSTRNFMSEQ 79 (131)
Q Consensus 50 ~t~rv~~~I~--~~~v~aLIDSGsThnFIs~~ 79 (131)
....+...|+ .+++.++||+||+..++...
T Consensus 21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~ 52 (403)
T 3aup_A 21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCE 52 (403)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEEECS
T ss_pred ceEEEEEECCCCCceeEEEEECCCCceeECCC
Confidence 3456678888 68999999999999988644
No 55
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=41.58 E-value=20 Score=27.81 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.5
Q ss_pred EEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 52 MRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 52 ~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
..+...|+ .+++.+++|+||+..++.
T Consensus 25 Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~ 52 (351)
T 1tzs_A 25 YFGTISIGSPPQNFTVIFDTGSSNLWVP 52 (351)
T ss_dssp CCEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEECCCCeEEEEEEeCCCcceEEe
Confidence 44677787 589999999999998874
No 56
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=39.80 E-value=25 Score=26.90 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.3
Q ss_pred eEEEEEEECC--eeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIGN--ISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~~--~~v~aLIDSGsThnFIs 77 (131)
...+...|+. +++.+++|+||+.-++.
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~ 47 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVP 47 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEc
Confidence 3556788884 89999999999998885
No 57
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=37.31 E-value=54 Score=19.97 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=31.0
Q ss_pred hHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCe
Q 039270 21 RTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNI 61 (131)
Q Consensus 21 ~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~ 61 (131)
.+.+||-|.++....|...+-...|-...+.+.+.+.|++.
T Consensus 7 Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~ 47 (76)
T 3adj_A 7 KNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGI 47 (76)
T ss_dssp HHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTE
T ss_pred HHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCE
Confidence 46788888887666666666555677777889999999985
No 58
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=32.96 E-value=36 Score=28.08 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=22.7
Q ss_pred eEEEEEEEC--CeeeEEEEeCCCcccccc
Q 039270 51 TMRINGRIG--NISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 51 t~rv~~~I~--~~~v~aLIDSGsThnFIs 77 (131)
...+...|+ .+++.+++|+||+.-++.
T Consensus 53 ~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~ 81 (478)
T 1qdm_A 53 QYFGEIGVGTPPQKFTVIFDTGSSNLWVP 81 (478)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEEE
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEe
Confidence 456778888 689999999999998874
No 59
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=29.30 E-value=93 Score=18.60 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.9
Q ss_pred hHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCe
Q 039270 21 RTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNI 61 (131)
Q Consensus 21 ~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~ 61 (131)
.+.+||-|.++....|...+-. .|-...+.+.+.+.|++.
T Consensus 6 Kt~LqE~~q~~~~~~p~Y~~~~-~Gp~h~~~F~~~v~v~g~ 45 (73)
T 3adg_A 6 KSRLQEYAQKYKLPTPVYEIVK-EGPSHKSLFQSTVILDGV 45 (73)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEE-ESSTTSCEEEEEEEETTE
T ss_pred HHHHHHHHHHcCCCCCEEEEEe-ECCCCCCeEEEEEEECCE
Confidence 4568888887765556655444 376777899999999985
No 60
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=28.25 E-value=59 Score=19.28 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCe
Q 039270 22 TELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNI 61 (131)
Q Consensus 22 ~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~ 61 (131)
+.+||-|.++....|...+-...|-...+.+.+.+.|++.
T Consensus 4 s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~ 43 (69)
T 1di2_A 4 GSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF 43 (69)
T ss_dssp HHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE
T ss_pred HHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE
Confidence 4577777776555566666556777777899999999984
No 61
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=26.91 E-value=1.1e+02 Score=19.32 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=32.5
Q ss_pred CChHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCe
Q 039270 19 LSRTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNI 61 (131)
Q Consensus 19 ~~~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~ 61 (131)
...+.+||-|.++....|...+-...|-...+.+.+.+.|++.
T Consensus 16 d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~ 58 (88)
T 3adl_A 16 HEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF 58 (88)
T ss_dssp CHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE
Confidence 3456788888887666676666566777778899999999984
No 62
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=26.52 E-value=65 Score=25.82 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=23.9
Q ss_pred CCeEEEEEEECC--eeeEEEEeCCCccccccc
Q 039270 49 SETMRINGRIGN--ISPIVLVDSGSTRNFMSE 78 (131)
Q Consensus 49 ~~t~rv~~~I~~--~~v~aLIDSGsThnFIs~ 78 (131)
.....+...|+. +++.+++|+||...++..
T Consensus 19 ~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c 50 (413)
T 3vla_A 19 TLQYVTTINQRTPLVSENLVVDLGGRFLWVDC 50 (413)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCSSEEEEC
T ss_pred CCeEEEEEEcCCCCcceEEEEeCCChhhhccc
Confidence 345667788876 788999999999888864
No 63
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=25.50 E-value=98 Score=19.56 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=32.3
Q ss_pred CChHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECCe
Q 039270 19 LSRTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGNI 61 (131)
Q Consensus 19 ~~~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~ 61 (131)
...+.+||-|.++....+...+-...|-...+.+.+.+.|++.
T Consensus 7 d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~ 49 (89)
T 1uhz_A 7 GPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE 49 (89)
T ss_dssp CHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE
T ss_pred CHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE
Confidence 3457788888887666666666555777778899999999884
No 64
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=25.06 E-value=1e+02 Score=18.53 Aligned_cols=40 Identities=10% Similarity=0.129 Sum_probs=30.3
Q ss_pred ChHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECC
Q 039270 20 SRTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGN 60 (131)
Q Consensus 20 ~~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~ 60 (131)
..+.+||-|.++... |...+-...|-...+.+.+.+.|++
T Consensus 9 ~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~ 48 (76)
T 1ekz_A 9 PISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS 48 (76)
T ss_dssp HHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT
T ss_pred HHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC
Confidence 456788888877655 7766656677777788999999987
No 65
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=21.58 E-value=94 Score=25.60 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=23.9
Q ss_pred hhhcccccCCeEEEEEEE--------CCeeeEEEEeCCCcccccc
Q 039270 41 RVISGARASETMRINGRI--------GNISPIVLVDSGSTRNFMS 77 (131)
Q Consensus 41 ~Al~g~~~~~t~rv~~~I--------~~~~v~aLIDSGsThnFIs 77 (131)
..+.....+...+++|.| +||-+.-|-|.+++..++.
T Consensus 276 ~~i~~~~~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~~i~c~a 320 (402)
T 3au7_A 276 EEVHRLENYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFGSVKCAA 320 (402)
T ss_dssp GGCSSCCTTCEEEEEEEEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred ccccccccCceEEEEEEEecCcEeccCceEEEEEEcCCCEEEEEE
Confidence 445556667788888887 4566677777665554443
No 66
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=20.84 E-value=1.6e+02 Score=18.37 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=28.9
Q ss_pred hHHHHHHHhcC-----cccceeeehhhhcccccCCeEEEEEEECCee
Q 039270 21 RTELQERCAKN-----STKMLEISLRVISGARASETMRINGRIGNIS 62 (131)
Q Consensus 21 ~~e~~~~~~~~-----~~~~~~iSl~Al~g~~~~~t~rv~~~I~~~~ 62 (131)
.+.+||-|.++ ....|...+-...|-...+.+.+.+.|++..
T Consensus 4 Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~ 50 (85)
T 2khx_A 4 KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGER 50 (85)
T ss_dssp CHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEE
T ss_pred HHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEE
Confidence 45677777753 3345665554556777778999999999854
No 67
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=20.41 E-value=88 Score=20.29 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.2
Q ss_pred CChHHHHHHHhcCcccceeeehhhhcccccCCeEEEEEEECC
Q 039270 19 LSRTELQERCAKNSTKMLEISLRVISGARASETMRINGRIGN 60 (131)
Q Consensus 19 ~~~~e~~~~~~~~~~~~~~iSl~Al~g~~~~~t~rv~~~I~~ 60 (131)
...+.+||-|.++ ...+...+ .-.|-...+.+.+.+.|++
T Consensus 7 d~Kt~LqE~~Qk~-~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g 46 (99)
T 1whq_A 7 GIKNFLYAWCGKR-KMTPAYEI-RAVGNKNRQKFMCEVRVEG 46 (99)
T ss_dssp SSHHHHHHHHHHT-TCCCEEEE-EEEECSSSEEEEEEEECTT
T ss_pred CHHHHHHHHHHHC-CCCCeEEE-eeecCCCCCeEEEEEEECC
Confidence 4567889988888 66777777 6677777889999999988
Done!