Query 039271
Match_columns 609
No_of_seqs 196 out of 2651
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 13:25:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 5.1E-30 1.8E-34 279.6 32.6 444 52-585 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 3.3E-30 1.1E-34 283.7 24.1 481 54-588 10-512 (524)
3 4gc0_A D-xylose-proton symport 100.0 1.1E-27 3.8E-32 260.9 24.4 414 91-597 54-481 (491)
4 1pw4_A Glycerol-3-phosphate tr 99.9 1.2E-26 4.2E-31 249.4 25.1 398 55-579 27-434 (451)
5 3o7q_A L-fucose-proton symport 99.9 1.9E-24 6.7E-29 231.4 33.2 355 54-539 24-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 1.2E-22 4E-27 213.4 20.6 344 59-536 3-350 (375)
7 2cfq_A Lactose permease; trans 99.9 2.6E-22 8.7E-27 214.6 13.2 397 56-586 7-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2.3E-13 7.8E-18 145.6 14.0 178 55-259 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 5.3E-12 1.8E-16 134.5 16.5 169 56-256 258-428 (438)
10 2cfq_A Lactose permease; trans 99.3 5.7E-12 2E-16 134.1 12.9 174 57-259 221-398 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 4.5E-11 1.6E-15 129.5 14.6 186 57-263 284-474 (491)
12 4gc0_A D-xylose-proton symport 99.2 3.5E-10 1.2E-14 122.3 17.7 182 58-263 278-465 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.8E-10 6.3E-15 120.1 2.5 165 56-248 199-364 (375)
14 2xut_A Proton/peptide symporte 98.2 7.3E-07 2.5E-11 97.1 5.7 150 93-262 336-504 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=5.1e-30 Score=279.62 Aligned_cols=444 Identities=16% Similarity=0.238 Sum_probs=295.0
Q ss_pred cCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-----hCCchhhhhHHHHHHHHHHHHHHhHHHHHhhh-ccchhHH
Q 039271 52 KGGWKYASILLANQGLATLAFFGVGVNLVLFLTRV-----LQQENANAANNVSKWTGTVYMCSLIGAFLSDS-YWGRYLT 125 (609)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr-~~Grr~~ 125 (609)
++++|.++.+++..++.++++|++.++++.|++++ +|.+..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567888899999999999999999999999988 99999999999999999999999999999999 6 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhh
Q 039271 126 CAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKER 205 (609)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (609)
+..+.++..++.++++++ ++.+.++++|++.|++.+...+...++++|++|+++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP----------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR-- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC----------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH--
T ss_pred HHHHHHHHHHHHHHHHHh----------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc--
Confidence 999999998888877765 56788999999999999999999999999999987733
Q ss_pred hccchhHHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceec---CCCCC-ChhHHHHHH
Q 039271 206 QSKTLFFCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYV---KPCGN-PLPRVAQVF 281 (609)
Q Consensus 206 ~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 281 (609)
|+.++++++...++|..++|.+++++.+..||++.|++.++..+++++.++...++...+ ++... ...+..+..
T Consensus 144 --r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
T 4aps_A 144 --RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLL 221 (491)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHH
T ss_pred --ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHH
Confidence 677888899999999999999999999989999999998877776666554333322111 11111 111111100
Q ss_pred HH-------------H-HhhcccccCCCchhhhhhcCCcccccCccccccCchhh-HHhhhhcccccCCCCCCCCCcccc
Q 039271 282 IA-------------A-ARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIE-FLDKAATITDNDLAGPKNPWKLCT 346 (609)
Q Consensus 282 ~~-------------~-~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 346 (609)
.. . ....+.. +++..... ........... ...|+...
T Consensus 222 ~~~g~~l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 273 (491)
T 4aps_A 222 VKVSLAVAGFIAIIVVMNLVGWNS-----------------------LPAYINLLTIVAIAIPVFYF-----AWMISSVK 273 (491)
T ss_dssp HHCCCCCHHHHHHHHHHHHHSSCC-----------------------TTHHHHHHHHHHHHHHHHHH-----HHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhccCcc-----------------------cccchhhhhHHHHHHHHHHH-----HHHhhccc
Confidence 00 0 0000000 00000000 00000000000 00000000
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEeccc-ccccccccccCcccccchhHHHHHHHHHhhhhhhhhccc
Q 039271 347 VTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDV-MNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAG 425 (609)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (609)
....+.++......+++....++..+.+..+.+...... .+.. ....+.......+..++..++.+++.++++|
T Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 348 (491)
T 4aps_A 274 -VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKK 348 (491)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC----ccCHHHHhccchHHHHHHHHHHHHHHHHHhc
Confidence 001122333334445555555666665555443222111 1111 1345667777788888888888887665555
Q ss_pred cccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcC
Q 039271 426 KLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQA 505 (609)
Q Consensus 426 r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~ 505 (609)
|. ......+..+.++.+++++.+....... .. ....+.+++++.+++.+++.+...+..++++.+.+
T Consensus 349 r~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 349 NQ------PSSPTKFAVGLMFAGLSFLLMAIPGALY----GT---SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp C---------CHHHHHHHHHHHHHHHTTTHHHHHHC----CC---CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred cC------CCchHHHHHHHHHHHHHHHHHHHHHHhc----CC---CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 42 1245567788888888877776643210 00 12346677788888999999999999999999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhccccccc
Q 039271 506 PDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGI 585 (609)
Q Consensus 506 p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~ 585 (609)
|++.|++++|+.++...+|+.+++.+.+++.+. ++...|+++++++++..++.+++.++.+++
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765421 123467777888888877777776665544
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=3.3e-30 Score=283.67 Aligned_cols=481 Identities=24% Similarity=0.326 Sum_probs=284.9
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhC------CchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc-chhHHH
Q 039271 54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQ------QENANAANNVSKWTGTVYMCSLIGAFLSDSYW-GRYLTC 126 (609)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~-Grr~~~ 126 (609)
++|.++.+++..++.++++|++.++++.|+++++| .+..+++++.+.+.++..++.+++|+++|| + |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHH
Confidence 45567778888999999999999999999999999 999999999999999999999999999999 6 999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcch-hHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhh
Q 039271 127 AVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSI-FAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKER 205 (609)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (609)
..+.++..++.+++.++ . +.+.++++|++.|++.+...+...++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---- 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF----------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---- 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHT----------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT----
T ss_pred HHHHHHHHHHHHHHHHh----------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc----
Confidence 99999998888887776 4 68889999999999999999999999999999887
Q ss_pred hccchh---HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHH
Q 039271 206 QSKTLF---FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFI 282 (609)
Q Consensus 206 ~~r~~~---~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (609)
|++. +++++...++|..++|.+++++.+..||++.|++.++..+++.+.++..+++.++++|++++..+..+...
T Consensus 143 --r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (524)
T 2xut_A 143 --KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIR 220 (524)
T ss_dssp --TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHH
Confidence 6544 45588999999999999999999889999999998887777666655544443333332222111111111
Q ss_pred HHHhhcccccCCCchhhhhhcCCcccccCccccccC---chhhHHhhhhcccccCCCCCCCCC-------cccchhhHHH
Q 039271 283 AAARKWNVVVPANSDELYEVAGPESAIKGSRKILHS---NEIEFLDKAATITDNDLAGPKNPW-------KLCTVTQVEE 352 (609)
Q Consensus 283 ~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 352 (609)
..++++.... +....+................... .......... .+.+ ...+| +.+..+...+
T Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~ 294 (524)
T 2xut_A 221 SALLTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLV--MGFV---GAGASLQLERARKSHPDAAVDG 294 (524)
T ss_dssp ------CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHH--HHHH---HTGGGTHHHHSCCSCCSSSSTT
T ss_pred HHHhhhhccc-Cccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhh--hccc---ccchhhHHhhhhccccHhHHHH
Confidence 1111110000 0000000000000000000000000 0000000000 0000 00011 0000001122
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCC
Q 039271 353 AKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPK 432 (609)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 432 (609)
.++.+....++.....++..+.+..+.+..+....+... + ...+.+..++.+..++..++.+++..+..+|.+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 369 (524)
T 2xut_A 295 VRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ--W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK-- 369 (524)
T ss_dssp TTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS--S-SCHHHHHTTSGGGHHHHGGGTTTC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe--e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC--
Confidence 233333334444444445555554444433322222110 0 24455666777777888888887654444554332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHH
Q 039271 433 GLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSF 512 (609)
Q Consensus 433 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~ 512 (609)
.+....+.+|+++.+++++.+....... +. ....+.+++++.+++.+++++...+..++++.+.+|++.||+
T Consensus 370 -~~~~~~~~~g~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~ 441 (524)
T 2xut_A 370 -LTALRKMGAGIAITGLSWIVVGTIQLMM----DG---GSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGT 441 (524)
T ss_dssp --CCHHHHHTHHHHHHHHHHTTTTTTTTT----TT---TCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTT
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHh----cC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhH
Confidence 2245567788888888877765532110 00 113456677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCC-CCccchhhHHHHHHHHHHHHHHHHHhhhccccccccCC
Q 039271 513 GSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPD-DLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGINLD 588 (609)
Q Consensus 513 ~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~ 588 (609)
++|++++...+|+.+++.+.+.+.+.+. .+|..+ +.+ .....|++++++++++.++++++.+++++++.+
T Consensus 442 ~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (524)
T 2xut_A 442 IMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARSYQMQDHY 512 (524)
T ss_dssp THHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 9999999999999999999987753210 012110 000 011237778888888888777777766655433
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=1.1e-27 Score=260.94 Aligned_cols=414 Identities=13% Similarity=0.063 Sum_probs=235.8
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhccC-CCCCCCCCCccCCCcchhHH
Q 039271 91 NANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLVLLSVLSFLMIK-PTGCGDGFISCKPLSSIFAA 169 (609)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 169 (609)
....+++.+.+.++..++++++|+++||+ |||++++++.+++.++.+++++....... .... .-......+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-----~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-----TVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-----SCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHhhhHH
Confidence 45678899999999999999999999996 99999999999999999888754100000 0000 00000126789
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhcccc--------cchhH
Q 039271 170 IFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDS--------GKWTL 241 (609)
Q Consensus 170 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~--------~g~~~ 241 (609)
.++++|+++|+|.|+..+...++++|..|+++ |++..++++.+..+|..+++.++..+... .+|++
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH
Confidence 99999999999999999999999999999988 99999999999999999988877655432 34666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchh
Q 039271 242 GFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEI 321 (609)
Q Consensus 242 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 321 (609)
.+.+..+..++.++..+. .||+|+++..+.+.|++.+..++....+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~--------------------------------~peSp~~L~~~~~~~~a~~~l~~~~~~~~~ 249 (491)
T 4gc0_A 202 MFASECIPALLFLMLLYT--------------------------------VPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 (491)
T ss_dssp HHHTTHHHHHHHHHHGGG--------------------------------SCCCHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhhhhc--------------------------------CCCChHHHHHcCchhHHHHhHHHhcCCchh
Confidence 665554443333332221 566666666666555554443332211110
Q ss_pred hH--Hhhhh-cccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHH-HHHHHHHHhcccceeeEecccccccccccccC
Q 039271 322 EF--LDKAA-TITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLC-TIIYSVVFTQMASLFVEQGDVMNSHIGEFRLP 397 (609)
Q Consensus 322 ~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (609)
.. .+... ....++ ...+ ......++.........+ ..........+.+.+... .... ...
T Consensus 250 ~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~ 313 (491)
T 4gc0_A 250 TQAVQEIKHSLDHGRK-----TGGR----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT-LGAS------TDI 313 (491)
T ss_dssp HHHHHHHHHHHHHHHH-----HTTH----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SSCC------HHH
T ss_pred HHHHHHHHHHHHhhhh-----hhhH----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh-cCCC------ccc
Confidence 00 00000 000000 0000 000000011111111110 000000111111111110 0000 111
Q ss_pred cccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhH
Q 039271 398 AASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIF 477 (609)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 477 (609)
......+..+..++...+...+.|+.+|| ..+..+...++++++.++..... ..+.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~dr~Grr-----------~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~ 370 (491)
T 4gc0_A 314 ALLQTIIVGVINLTFTVLAIMTVDKFGRK-----------PLQIIGALGMAIGMFSLGTAFYT------------QAPGI 370 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSH-----------HHHHHHHHHHHHHHHHHHHHHHT------------TCCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCc-----------chhccchHHHHHHHHHHHHHHhc------------ccchH
Confidence 11222233333344444444444444444 23556666666666665544321 11222
Q ss_pred HHHHHHHHHHHHH-HhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCccch
Q 039271 478 WQIPQYVLVGASE-VFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGITAKGDKPGWIPDDLNTGH 556 (609)
Q Consensus 478 ~~i~~~~l~g~g~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 556 (609)
..+...++...+. ....|..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.+.. |. ....+
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~---~~~~~ 440 (491)
T 4gc0_A 371 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WL---VAHFH 440 (491)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HH---HHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---Hhhhh
Confidence 2222222322222 2334666788999999999999999999999999999888877654311 00 00011
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhccccccccCCchhhHHHhh
Q 039271 557 MDRFYFLLAVLTAFDFVIYLICANWYKGINLDEDSCEKEME 597 (609)
Q Consensus 557 ~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~ 597 (609)
....|++++++++++.++.+++.||+|++++||.++..+++
T Consensus 441 ~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~ 481 (491)
T 4gc0_A 441 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481 (491)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC--
T ss_pred hhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCC
Confidence 22357888999999999999999999999999988776543
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=1.2e-26 Score=249.39 Aligned_cols=398 Identities=8% Similarity=-0.019 Sum_probs=256.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271 55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV 134 (609)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 134 (609)
|+.++.+++..+...+..+.+.+.++.+ .+++ .+..+.+++.+++.++..++.+++|+++||+ |||+++..+.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 5566777777777777777776777655 4567 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----HhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271 135 VGLVLLSV----LSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL 210 (609)
Q Consensus 135 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 210 (609)
++.+++++ . .+++.++++|++.|++.+...+...++++|++|+++ |++
T Consensus 104 ~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~ 155 (451)
T 1pw4_A 104 AVMLFMGFVPWAT----------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGG 155 (451)
T ss_dssp HHHHHHHHCHHHH----------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHH
T ss_pred HHHHHHHhhhhcc----------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhH
Confidence 99988887 5 567789999999999999999999999999999887 999
Q ss_pred hHHHHHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcc
Q 039271 211 FFCYFYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWN 289 (609)
Q Consensus 211 ~~~~~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (609)
.+++.+.+.++|..++|.+++++.+..| |++.|++.++..++..++.+...++.+++....+. .
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------- 220 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-E-------------- 220 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-T--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-h--------------
Confidence 9999999999999999999999888888 99999998877666555443333322111100000 0
Q ss_pred cccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhH-HHHHHHHHH
Q 039271 290 VVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKM-LPIWLCTII 368 (609)
Q Consensus 290 ~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 368 (609)
+. .+.++.+... . ..+ ..+++..........+.++.. +..++....
T Consensus 221 ----~~-------~~~~~~~~~~-~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (451)
T 1pw4_A 221 ----EY-------KNDYPDDYNE-K--AEQ-------------------ELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 267 (451)
T ss_dssp ----TT-------CCC-----------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ----hh-------cccccccchh-h--hhc-------------------ccccccchHHHHHcCHHHHHHHHHHHHHHHH
Confidence 00 0000000000 0 000 000000000000001111111 111122222
Q ss_pred HHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhc--cccccCCCCCCChhHHHHHHHHH
Q 039271 369 YSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPV--AGKLNGNPKGLSELQRMGIGLII 446 (609)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~ 446 (609)
++......+.++.. ..+.+ ....+.+.....+..++...+.+++.+++ .+| ..+.++..+
T Consensus 268 ~~~~~~~~~~~~~~-~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~ 329 (451)
T 1pw4_A 268 RYGILDWSPTYLKE-VKHFA------LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHBTT-BSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHH
Confidence 22222222222211 11111 11233445555556666666666654443 222 234444444
Q ss_pred HH-HHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHH-H
Q 039271 447 GM-LAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISF-G 524 (609)
Q Consensus 447 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~l-g 524 (609)
.. ++++.+... ...+.+..+...++.|++.....+..+.++.+.+|++.|+++.|+.++...+ |
T Consensus 330 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 395 (451)
T 1pw4_A 330 LVTIATIVYWMN--------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395 (451)
T ss_dssp HHHHHHHHTTSC--------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHH
Confidence 44 555544331 1224555666667788877777888889999999999999999999999999 9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhc
Q 039271 525 NYVSSLLVVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICA 579 (609)
Q Consensus 525 ~~ig~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~ 579 (609)
+.+++.+.+.+.+.. ++...|++.+++.+++.++.++..
T Consensus 396 ~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 396 SVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999876522 234467777777777776665544
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.9e-24 Score=231.42 Aligned_cols=355 Identities=12% Similarity=0.053 Sum_probs=233.5
Q ss_pred CchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271 54 GWKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF 133 (609)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 133 (609)
+++.+..+++..+...+......+.++ ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 455666666666677776665555555 46778999999999999999999999999999999995 9999999999999
Q ss_pred HHHHHHH---HHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccch
Q 039271 134 VVGLVLL---SVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTL 210 (609)
Q Consensus 134 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 210 (609)
.++.+++ ... .+++.++++|++.|++.+...+...++++|++|+++ |++
T Consensus 102 ~~~~~~~~~~~~~----------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~ 153 (438)
T 3o7q_A 102 ALGAALFWPAAEI----------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHF 153 (438)
T ss_dssp HHHHHHHHHHHHT----------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHH
T ss_pred HHHHHHHHhcccc----------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHH
Confidence 9988887 443 568899999999999999999999999999999998 999
Q ss_pred hHHHHHHHHhhhHHHHhhhhhhcc-cccc-------------------------hhHHHHHHHHHHHHHHHHHHhcC-Cc
Q 039271 211 FFCYFYFFLNVGSLFSNTILVYYE-DSGK-------------------------WTLGFLVSLASAVIALLSYLMGT-PG 263 (609)
Q Consensus 211 ~~~~~~~~~~ig~~~~~~i~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~ 263 (609)
.+++++.+.++|..++|.+++++. +..+ |++.|++.++..++..++++..+ |+
T Consensus 154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~ 233 (438)
T 3o7q_A 154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPA 233 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999999988 5554 99999877666555544443321 11
Q ss_pred ceecCCCCCChhHHHHHHHHHHhhcccccCCCchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCc
Q 039271 264 YRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWK 343 (609)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (609)
.+++++++++. .....++.+..
T Consensus 234 ~~~~~~~~~~~------------------------------------------~~~~~~~~~~~---------------- 255 (438)
T 3o7q_A 234 LQSDNHSDAKQ------------------------------------------GSFSASLSRLA---------------- 255 (438)
T ss_dssp CTTTCCCCSST------------------------------------------TSHHHHHHHHT----------------
T ss_pred ccccccccccc------------------------------------------cchhhhHHHHH----------------
Confidence 10000000000 00000000000
Q ss_pred ccchhhHHHHHHHHhHHHHHHHHHHHHHHHhcccceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhc
Q 039271 344 LCTVTQVEEAKCVLKMLPIWLCTIIYSVVFTQMASLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPV 423 (609)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (609)
++.+.....+..++..........+.+.++..+..+.+ ....+.......+..++...+.+++.+++
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 256 -------RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp -------TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -------hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00011111111111122122222222222011111111 11233444445555555666666654444
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhh
Q 039271 424 AGKLNGNPKGLSELQRMGIGLIIGMLAMIAAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNG 503 (609)
Q Consensus 424 ~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~ 503 (609)
.+| ..+..+.++.+++++.+.+.. +. +.+...++.+++.....|..+++..+
T Consensus 323 ~~~-----------~~~~~~~~~~~~~~~~~~~~~----------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 374 (438)
T 3o7q_A 323 APH-----------KVLAAYALIAMALCLISAFAG----------------GH-VGLIALTLCSAFMSIQYPTIFSLGIK 374 (438)
T ss_dssp CHH-----------HHHHHHHHHHHHHHHHHHHCC----------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHS
T ss_pred cch-----------HHHHHHHHHHHHHHHHHHHcC----------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 346666666776666655421 22 33444567788888888999999899
Q ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 039271 504 QAPDGIKSFGSSLCMASISFGNYVSSLLVVMVMGIT 539 (609)
Q Consensus 504 ~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~i~~~~ 539 (609)
..|++ ++.+.++.. .+.+|+.+++.+.+.+.+..
T Consensus 375 ~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 375 NLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp SCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred hcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 99977 899999887 66799999999999887654
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=1.2e-22 Score=213.37 Aligned_cols=344 Identities=12% Similarity=0.033 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHHH
Q 039271 59 SILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGLV 138 (609)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~~ 138 (609)
+.+++..++..+......+.++.+ .+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345556666666666666666654 668999999999999999999999999999999996 999999999999999998
Q ss_pred HHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHH
Q 039271 139 LLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFF 218 (609)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 218 (609)
++.+. ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++.+++++..
T Consensus 81 ~~~~~----------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 132 (375)
T 2gfp_A 81 VAVTT----------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMG 132 (375)
T ss_dssp HHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHH
T ss_pred HHHHh----------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHH
Confidence 88887 678899999999999999999999999999999888 99999999999
Q ss_pred HhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCCCchh
Q 039271 219 LNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPANSDE 298 (609)
Q Consensus 219 ~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 298 (609)
.++|..++|.+++++.+..||++.|++.++..++..+......|+ +++.+++.
T Consensus 133 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~------------------------ 185 (375)
T 2gfp_A 133 ILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE---TRPVDAPR------------------------ 185 (375)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC---CSTTTCCC------------------------
T ss_pred HHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc---cCCCCccc------------------------
Confidence 999999999999999998899999998776655544322222111 11100000
Q ss_pred hhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHH-HHHHHHHHHHHhccc
Q 039271 299 LYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPI-WLCTIIYSVVFTQMA 377 (609)
Q Consensus 299 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 377 (609)
++ ...+++ +....+.+...... +.....+.......+
T Consensus 186 -------~~------------------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (375)
T 2gfp_A 186 -------TR------------------------------LLTSYK-----TLFGNSGFNCYLLMLIGGLAGIAAFEACSG 223 (375)
T ss_dssp -------CC------------------------------TTTCST-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred -------cc------------------------------HHHHHH-----HHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000111 11111222222111 111222222222222
Q ss_pred ceeeEecccccccccccccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHH-HHHHHH--HH
Q 039271 378 SLFVEQGDVMNSHIGEFRLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLII-GMLAMI--AA 454 (609)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-~~~~~~--~~ 454 (609)
.++ .+..+.+ ....+.+.....+..++...+.+++ .+|.+ + +...+..+ ...+.. ..
T Consensus 224 ~~~-~~~~g~~------~~~~g~~~~~~~~~~~~~~~~~~~l----~~r~~-------~--~~~~~~~~~~~~~~~~~~~ 283 (375)
T 2gfp_A 224 VLM-GAVLGLS------SMTVSILFILPIPAAFFGAWFAGRP----NKRFS-------T--LMWQSVICCLLAGLLMWIP 283 (375)
T ss_dssp CSS-HHHHHHH------HHHHHHHHHTHHHHHHHHHHHHHTT----TTHHH-------H--HHHHHHHHHHHTSSSSSHH
T ss_pred HHH-HHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------H--HHHHHHHHHHHHHHHHHHH
Confidence 221 1111111 1122334444455555555555443 44421 1 23344433 222222 22
Q ss_pred HHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039271 455 GATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLCMASISFGNYVSSLLVVM 534 (609)
Q Consensus 455 ~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~lg~~ig~~~~~~ 534 (609)
.... ..+.+..+...++.+++.+...+....++.+..| +.|+++.|+.+..+.+|..+++.+.+.
T Consensus 284 ~~~~--------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 284 DWFG--------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHH--------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred hhhc--------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1134455566778889999999999999999998 889999999999999999888887776
Q ss_pred hh
Q 039271 535 VM 536 (609)
Q Consensus 535 i~ 536 (609)
+.
T Consensus 349 l~ 350 (375)
T 2gfp_A 349 LP 350 (375)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.87 E-value=2.6e-22 Score=214.61 Aligned_cols=397 Identities=11% Similarity=-0.020 Sum_probs=219.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHH
Q 039271 56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVV 135 (609)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~ 135 (609)
|..+.+....++...++..+.++++.|+++++|.+..+++++.+.+.++..++++++|+++||+ ||||+++.+.+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4556666666666666666778999999988999999999999999999999999999999995 999999988876654
Q ss_pred HHHHHHHHh-hhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271 136 GLVLLSVLS-FLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY 214 (609)
Q Consensus 136 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 214 (609)
+...+.... .+. ....++.++++.+++.+...+...+...+..++..+ .++..++.
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHH-------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 322111110 000 000122334443433333333333333333322111 15666777
Q ss_pred HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCcceecCCCCCChhHHHHHHHHHHhhcccccCC
Q 039271 215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPGYRYVKPCGNPLPRVAQVFIAAARKWNVVVPA 294 (609)
Q Consensus 215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 294 (609)
.+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++ +++..+ .++
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~ 199 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VAN 199 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------ccc
Confidence 777789999999999998876 689999987765543333222221111 100000 000
Q ss_pred CchhhhhhcCCcccccCccccccCchhhHHhhhhcccccCCCCCCCCCcccchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Q 039271 295 NSDELYEVAGPESAIKGSRKILHSNEIEFLDKAATITDNDLAGPKNPWKLCTVTQVEEAKCVLKMLPIWLCTIIYSVVFT 374 (609)
Q Consensus 295 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (609)
. .++ .+ +.....++.+. .++ +...............+..+.
T Consensus 200 ~---------~~~-~~-----~~~~~~~~~~~-----------------------~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 200 A---------VGA-NH-----SAFSLKLALEL-----------------------FRQ-PKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp S---------SSS-CC-----CCCCHHHHHHH-----------------------TTC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred c---------ccc-cc-----ccccHHHHHHH-----------------------hcC-CchhhHHHHHHHHHHHHHHHH
Confidence 0 000 00 00000000000 000 111111111111111112221
Q ss_pred -cccceeeEeccccccccccc-ccCcccccchhHHHHHHHHHhhhhhhhhccccccCCCCCCChhHHHHHHHHHHHHHHH
Q 039271 375 -QMASLFVEQGDVMNSHIGEF-RLPAASMSAFDICSVLICTGIYRKILVPVAGKLNGNPKGLSELQRMGIGLIIGMLAMI 452 (609)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~~~~~~~ 452 (609)
..+.++... .... +. ....+....++.+..++...+.+++.|++++| ..+..+.++.+++++
T Consensus 241 ~~~~~~~~~~---~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~-----------~~l~~~~~~~~~~~~ 304 (417)
T 2cfq_A 241 QQFANFFTSF---FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRII 304 (417)
T ss_dssp HHHHHHHHHT---SSSH--HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---Hhcc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH-----------HHHHHHHHHHHHHHH
Confidence 112222110 0000 00 00112333444444455555556654444433 245566666666655
Q ss_pred HHHHHHHhhhhccCCCCCcccchhHHHHHHHHHHHHHHHhhhhhhHHHhhhcCCcchhHHHHHHH-HHHHHHHHHHHHHH
Q 039271 453 AAGATEIQRLKYISPGEKASSLSIFWQIPQYVLVGASEVFMYVGQLEFFNGQAPDGIKSFGSSLC-MASISFGNYVSSLL 531 (609)
Q Consensus 453 ~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~lg~~ig~~~ 531 (609)
.+.. ..+.+.++...++.+++.....+....++.|.+|++.|+++.++. ++.+.+|+.+++.+
T Consensus 305 ~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l 368 (417)
T 2cfq_A 305 GSSF----------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp HHTT----------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred HHHH----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 5533 123444455555666666666677788999999999999999994 78889999999999
Q ss_pred HHHhhhhcccCCCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHhhhcccccccc
Q 039271 532 VVMVMGITAKGDKPGWIPDDLNTGHMDRFYFLLAVLTAFDFVIYLICANWYKGIN 586 (609)
Q Consensus 532 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~ 586 (609)
.+.+.+. .++...|.+.+++.+++.++.++..++.++.+
T Consensus 369 ~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 369 AGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 9876542 12445677788888888777766666554443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=2.3e-13 Score=145.62 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=149.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhcc--chhHHHHHHHHH
Q 039271 55 WKYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYW--GRYLTCAVFQLI 132 (609)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~--Grr~~~~~~~~~ 132 (609)
.+.++.+++..++....++++..+++.|+++.+|.+..+++++.+...++..++.++.|+++|| + |||+.+..+.++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMT 329 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHH
Confidence 3567778888888888889999999999998899999999999999999999999999999999 7 899988877665
Q ss_pred HH-HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271 133 FV-VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF 211 (609)
Q Consensus 133 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 211 (609)
.. ++.+++.+. + ..+.+.+.+..++.|++.+...+...+++.|.+|+++ |+++
T Consensus 330 ~~~~~~~~~~~~--~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~ 383 (451)
T 1pw4_A 330 LVTIATIVYWMN--P------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTA 383 (451)
T ss_dssp HHHHHHHHTTSC--C------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHH
T ss_pred HHHHHHHHHHHh--c------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhH
Confidence 55 333332221 1 1246667777788899888888888999999999988 9999
Q ss_pred HHHHHHHHhh-hHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271 212 FCYFYFFLNV-GSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM 259 (609)
Q Consensus 212 ~~~~~~~~~i-g~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 259 (609)
+++++...++ |..++|.+.|++.+..||+..|++.+++.+++.++.+.
T Consensus 384 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 384 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999988877777665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.38 E-value=5.3e-12 Score=134.49 Aligned_cols=169 Identities=11% Similarity=0.073 Sum_probs=134.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHH-HHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHH
Q 039271 56 KYASILLANQGLATLAFFGVGVNLVLF-LTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFV 134 (609)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~ 134 (609)
+.++..++..++....++.+..+++.| +++.+|.+..++++..+...++..++.+++|+++||+ |||+++..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 456666777777777788888999999 8888899999999999999999999999999999995 99999999988877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271 135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY 214 (609)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 214 (609)
++.+++... .+.+. ....++.+++.+...|...++..|.+|++ ++.+.++
T Consensus 337 ~~~~~~~~~----------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 386 (438)
T 3o7q_A 337 ALCLISAFA----------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSF 386 (438)
T ss_dssp HHHHHHHHC----------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHH
T ss_pred HHHHHHHHc----------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhH
Confidence 776665554 23333 33447788899999999999999988843 3444555
Q ss_pred HHHHHhhhHHHHhhhhhhcccccc-hhHHHHHHHHHHHHHHHH
Q 039271 215 FYFFLNVGSLFSNTILVYYEDSGK-WTLGFLVSLASAVIALLS 256 (609)
Q Consensus 215 ~~~~~~ig~~~~~~i~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 256 (609)
.. ...+|+.++|.+.|++.+..| ++..|++.+++.++.++.
T Consensus 387 ~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 387 IV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 44 567999999999999999888 999998876655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.32 E-value=5.7e-12 Score=134.14 Aligned_cols=174 Identities=12% Similarity=-0.007 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCC---chhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHH
Q 039271 57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQ---ENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIF 133 (609)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~ 133 (609)
..+..++..++....++....+++.|+.+.++. +....++..++..++..++.++.|+++||+ |||+++..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 344444444444445555556788888766553 244557777777788889999999999995 9999998887776
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHH
Q 039271 134 VVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFC 213 (609)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 213 (609)
.++.+++.+. .+.+.+.+..++.+++.+...+....+++|.+|++. |+++++
T Consensus 300 ~~~~~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g 351 (417)
T 2cfq_A 300 SVRIIGSSFA----------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYL 351 (417)
T ss_dssp HHHHHHHTTC----------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHH
T ss_pred HHHHHHHHHh----------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHH
Confidence 6654444332 234556666666777766667777889999999877 888888
Q ss_pred H-HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHh
Q 039271 214 Y-FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLM 259 (609)
Q Consensus 214 ~-~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 259 (609)
+ ++...++|+.++|.++|++.+..|++..|.+.+++.+++.+..+.
T Consensus 352 ~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 352 VCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8 577888999999999999998888989998888777777665544
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.24 E-value=4.5e-11 Score=129.49 Aligned_cols=186 Identities=11% Similarity=0.004 Sum_probs=136.6
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHH-----HHHH
Q 039271 57 YASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCA-----VFQL 131 (609)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~-----~~~~ 131 (609)
..+.+++...+....+.....+++.|+.+.++.+..+.+++.+...+...++.++.|+++||+ |||+... .+.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHH
Confidence 345555556666667777778889999988888878888888999999999999999999995 9987654 5555
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchh
Q 039271 132 IFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLF 211 (609)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 211 (609)
+..++.+++........ +....+.+.+.+..++.|++.+...+...+++.|.+|++. |+.+
T Consensus 363 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~ 423 (491)
T 4aps_A 363 FAGLSFLLMAIPGALYG-------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQM 423 (491)
T ss_dssp HHHHHHTTTHHHHHHCC-------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSS
T ss_pred HHHHHHHHHHHHHHhcC-------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHH
Confidence 55555555444311100 0001245667777888899999999999999999999999 9999
Q ss_pred HHHHHHHHhhhHHHHhhhhhhcccccchhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271 212 FCYFYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLASAVIALLSYLMGTPG 263 (609)
Q Consensus 212 ~~~~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (609)
.++++...++|..++|.+.+++.+ .++.+.|++.++..+++.++.+...++
T Consensus 424 ~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 424 MSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp THHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876 466677777776666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.18 E-value=3.5e-10 Score=122.34 Aligned_cols=182 Identities=12% Similarity=0.044 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHHHHHHH
Q 039271 58 ASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLIFVVGL 137 (609)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~~~~~~ 137 (609)
....+...++..+..+....+...++.+..+.+..+.........+...++.++++++.||+ |||+.++.+.....++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~ 356 (491)
T 4gc0_A 278 IVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGM 356 (491)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHH
Confidence 33334434443333333334444556667888888888888888899999999999999995 99999999988887777
Q ss_pred HHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHH
Q 039271 138 VLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYF 217 (609)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 217 (609)
+.+........ ........+..+..++ .....|..+.+.+|.||++. |+++.++.+.
T Consensus 357 ~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~ 413 (491)
T 4gc0_A 357 FSLGTAFYTQA----------------PGIVALLSMLFYVAAF-AMSWGPVCWVLLSEIFPNAI------RGKALAIAVA 413 (491)
T ss_dssp HHHHHHHHTTC----------------CHHHHHHHHHHHHHHH-HTTTTHHHHHHHHHSSCTTT------HHHHHHHHHH
T ss_pred HHHHHHHhccc----------------chHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhCCHhH------HHHHHHHHHH
Confidence 66655422210 0112222222222222 23345777899999999999 9999999999
Q ss_pred HHhhhHHHHhhhhhhcccc------cchhHHHHHHHHHHHHHHHHHHhcCCc
Q 039271 218 FLNVGSLFSNTILVYYEDS------GKWTLGFLVSLASAVIALLSYLMGTPG 263 (609)
Q Consensus 218 ~~~ig~~~~~~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~~ 263 (609)
..++|+.+++.+.+.+.+. .++.+.|++.+++.+++.++.++..|+
T Consensus 414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999988887766542 345567777777777666655554443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.94 E-value=1.8e-10 Score=120.06 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=126.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCCchhhhhHHHHHHHHHHHHHHhHHHHHhhhccchhHHHHHHHHH-HH
Q 039271 56 KYASILLANQGLATLAFFGVGVNLVLFLTRVLQQENANAANNVSKWTGTVYMCSLIGAFLSDSYWGRYLTCAVFQLI-FV 134 (609)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~laDr~~Grr~~~~~~~~~-~~ 134 (609)
|.++..++..++....++.+..+++.|+++.+|.+..+++++.+...++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566667777777888888889999999988999999999999999999999999999999995 872 2233222 22
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCccCCCcchhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHH
Q 039271 135 VGLVLLSVLSFLMIKPTGCGDGFISCKPLSSIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCY 214 (609)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 214 (609)
.+..+......+ ..+.+.+++..++.+++.+...+...+++.|.+| ++ |++..++
T Consensus 276 ~~~~~~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~ 330 (375)
T 2gfp_A 276 AGLLMWIPDWFG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGAL 330 (375)
T ss_dssp TSSSSSHHHHHH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHH
T ss_pred HHHHHHHHhhhc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHH
Confidence 222211111000 1346667777888899999999999999999987 55 8999999
Q ss_pred HHHHHhhhHHHHhhhhhhcccccchhHHHHHHHH
Q 039271 215 FYFFLNVGSLFSNTILVYYEDSGKWTLGFLVSLA 248 (609)
Q Consensus 215 ~~~~~~ig~~~~~~i~~~l~~~~g~~~~f~~~~~ 248 (609)
++...++|..++|.+.+.+.+..+|+..+++.++
T Consensus 331 ~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 331 VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999999999999999999887778777766543
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.23 E-value=7.3e-07 Score=97.09 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=93.9
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHh----hhccchh----HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCccCCCc
Q 039271 93 NAANNVSKWTGTVYMCSLIGAFLS----DSYWGRY----LTCAVFQLIFVVGLVLLSVLSFLMIKPTGCGDGFISCKPLS 164 (609)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~G~la----Dr~~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (609)
..+++.....++..++.++.+++. ||. |+| +.+..+.++..++.+++.+. +... +...
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~-----------~~~~ 401 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTI--QLMM-----------DGGS 401 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTT--TTTT-----------TTTC
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHH--HHHh-----------cCCC
Confidence 355555555666667777777764 553 432 45555655555554443332 0000 0000
Q ss_pred chhHHHHHHHHHHHHHhhcCchhhhhhhhhccCCCCChhhhhccchhHHHHHHHHhhhHHHHhhhhhhccccc--ch---
Q 039271 165 SIFAAIFYLSIYLIAFGYGGHQPTLATFGADQFDESKPKERQSKTLFFCYFYFFLNVGSLFSNTILVYYEDSG--KW--- 239 (609)
Q Consensus 165 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~~~i~~~l~~~~--g~--- 239 (609)
..+.+.+.+..++.|++.+...+...+++.|.+|++. |++++++++...++|+.++|.+.+.+.+.. +|
T Consensus 402 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~ 475 (524)
T 2xut_A 402 ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQ 475 (524)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 1245666777888999999999999999999999998 999999999999999999999999988743 23
Q ss_pred ------hHHHHHHHHHHHHHHHHHHhcCC
Q 039271 240 ------TLGFLVSLASAVIALLSYLMGTP 262 (609)
Q Consensus 240 ------~~~f~~~~~~~~~~~~~~~~~~~ 262 (609)
+..|++.+++.+++.++++...+
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (524)
T 2xut_A 476 TGMSVTAFQMFFFAGFAILAAIVFALYAR 504 (524)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33366666655555554444333
Done!