Query 039274
Match_columns 96
No_of_seqs 105 out of 308
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mit_A RCMTI-V, trypsin inhibi 100.0 1.3E-33 4.5E-38 179.3 7.5 67 28-96 3-69 (69)
2 1vbw_A Trypsin inhibitor BGIT; 100.0 1.8E-33 6.1E-38 178.2 7.1 67 28-96 2-68 (68)
3 1dwm_A LUTI, linum usitatissin 100.0 7.3E-33 2.5E-37 175.8 7.4 67 28-96 4-70 (70)
4 1to2_I Chymotrypsin inhibitor 100.0 1.1E-32 3.7E-37 172.9 6.6 64 33-96 1-64 (64)
5 1cse_I Eglin C; complex(serine 100.0 3.7E-32 1.3E-36 173.1 6.3 65 32-96 5-70 (70)
6 3rdy_A BWI-1=protease inhibito 100.0 8.6E-32 3E-36 175.7 7.4 63 33-95 16-78 (79)
7 2ci2_I Chymotrypsin inhibitor 100.0 1.1E-31 3.8E-36 175.9 7.2 65 32-96 19-83 (83)
8 1cq4_A Protein (serine protein 99.9 8.3E-24 2.8E-28 125.8 4.8 47 33-79 1-47 (47)
9 1hym_A CMTI-V, hydrolyzed cucu 99.7 1.6E-18 5.5E-23 102.5 5.1 42 29-72 4-45 (45)
10 1hym_B CMTI-V, hydrolyzed cucu 99.3 2.9E-12 9.8E-17 67.9 2.8 24 73-96 1-24 (26)
11 2kuf_A PKNB, serine/threonine- 65.6 12 0.00041 24.3 4.9 23 34-56 7-29 (139)
12 3ouv_A Serine/threonine protei 57.0 11 0.00039 21.8 3.2 23 35-57 8-30 (71)
13 2kud_A PKNB, serine/threonine- 47.4 22 0.00074 23.1 3.7 22 35-56 9-30 (140)
14 2kue_A PKNB, serine/threonine- 45.0 52 0.0018 21.2 5.3 25 35-59 76-100 (138)
15 3ge3_E Toluene-4-monooxygenase 42.5 24 0.00082 23.1 3.3 24 48-71 27-50 (103)
16 2kui_A PKNB, serine/threonine- 39.6 74 0.0025 23.0 5.9 58 35-94 9-80 (275)
17 3py9_A Protein kinase; pasta, 31.0 1.4E+02 0.0046 22.0 6.2 22 34-55 6-27 (294)
18 2kui_A PKNB, serine/threonine- 29.0 1.6E+02 0.0055 21.2 6.7 23 35-57 76-98 (275)
19 3da5_A Argonaute; PAZ domain, 28.4 33 0.0011 23.2 2.2 29 33-62 8-36 (128)
20 1u07_A TONB protein; beta-hair 26.8 45 0.0015 20.0 2.4 15 78-92 28-42 (90)
21 3uv9_A TRIM5alpha, tripartite 24.9 47 0.0016 23.0 2.6 21 70-90 122-143 (186)
22 2yh9_A Small protein A, BAME p 23.4 73 0.0025 19.3 3.0 19 74-92 53-71 (88)
23 3djc_A Type III pantothenate k 23.3 47 0.0016 24.5 2.4 40 35-74 101-140 (266)
24 2jo6_A Nitrite reductase [NAD( 21.3 46 0.0016 20.6 1.8 26 66-91 18-44 (113)
No 1
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=100.00 E-value=1.3e-33 Score=179.25 Aligned_cols=67 Identities=55% Similarity=0.994 Sum_probs=65.4
Q ss_pred hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274 28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
.|+ +|++||||||+++++|+.+|++|+|++.++||++|++|||||||||||||+|++|+|+++|+||
T Consensus 3 ~c~--~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG 69 (69)
T 1mit_A 3 SCP--GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 69 (69)
T ss_dssp CCS--SCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred CCC--CcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 587 8999999999999999999999999999999999999999999999999999999999999998
No 2
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=100.00 E-value=1.8e-33 Score=178.20 Aligned_cols=67 Identities=54% Similarity=0.952 Sum_probs=65.3
Q ss_pred hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274 28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
.|+ +|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus 2 ~c~--~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 68 (68)
T 1vbw_A 2 RCQ--GKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG 68 (68)
T ss_dssp CSC--SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCC--CCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence 487 8999999999999999999999999999999999999999999999999999999999999998
No 3
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=99.98 E-value=7.3e-33 Score=175.82 Aligned_cols=67 Identities=52% Similarity=0.962 Sum_probs=65.3
Q ss_pred hhCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274 28 YCRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 28 ~C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
.|+ +|++||||||+++++|+.+|++|+|++.++||+||+++||||||||||||||++|+|+++|+||
T Consensus 4 ~c~--~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig 70 (70)
T 1dwm_A 4 RCP--GKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT 70 (70)
T ss_dssp CCS--SCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred cCC--ChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence 587 8999999999999999999999999999999999999999999999999999999999999998
No 4
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=99.97 E-value=1.1e-32 Score=172.86 Aligned_cols=64 Identities=38% Similarity=0.646 Sum_probs=62.2
Q ss_pred CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
.|+|||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus 1 ~k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG 64 (64)
T 1to2_I 1 MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG 64 (64)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence 3799999999999999999999999999999999999999999999999999999999999998
No 5
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=99.97 E-value=3.7e-32 Score=173.09 Aligned_cols=65 Identities=31% Similarity=0.455 Sum_probs=61.4
Q ss_pred CCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEEC-CCCCEEecCcCC
Q 039274 32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVD-HHGIVKYTPRIG 96 (96)
Q Consensus 32 ~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD-~~g~V~~vP~vG 96 (96)
.+|++||||||+++++|+.+|++|+|++.++||++|+++|||||||||||||| ++|+|+++|+||
T Consensus 5 ~~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG 70 (70)
T 1cse_I 5 SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG 70 (70)
T ss_dssp ---CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred CCCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence 47899999999999999999999999999999999999999999999999999 999999999998
No 6
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=99.97 E-value=8.6e-32 Score=175.69 Aligned_cols=63 Identities=54% Similarity=0.919 Sum_probs=62.3
Q ss_pred CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcC
Q 039274 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRI 95 (96)
Q Consensus 33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~v 95 (96)
+|+|||||||+++++|+++|++|||++.++||++|+++||||||||||||||++|+|+++|+|
T Consensus 16 ~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i 78 (79)
T 3rdy_A 16 GKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV 78 (79)
T ss_dssp SCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred CCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence 899999999999999999999999999999999999999999999999999999999999997
No 7
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=99.97 E-value=1.1e-31 Score=175.89 Aligned_cols=65 Identities=38% Similarity=0.670 Sum_probs=63.7
Q ss_pred CCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeEEEEECCCCCEEecCcCC
Q 039274 32 SSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 32 ~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
.+|++||||||+++++|+.+|++|+|++.++||++|++|||||||||||||||++|+|+++|+||
T Consensus 19 ~~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG 83 (83)
T 2ci2_I 19 NLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG 83 (83)
T ss_dssp CCCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999998
No 8
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=99.89 E-value=8.3e-24 Score=125.76 Aligned_cols=47 Identities=32% Similarity=0.515 Sum_probs=36.5
Q ss_pred CCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCCcCCeE
Q 039274 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDYRCDRV 79 (96)
Q Consensus 33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDfr~dRV 79 (96)
.|+|||||||+++++|+++|++|||++.++||++|++|||||||||+
T Consensus 1 ~K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~ 47 (47)
T 1cq4_A 1 MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM 47 (47)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred CCcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence 37999999999999999999999999999999999999999999996
No 9
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.74 E-value=1.6e-18 Score=102.46 Aligned_cols=42 Identities=57% Similarity=0.880 Sum_probs=40.8
Q ss_pred hCCCCCCccccccCcchHHHHHHHHHHcCCCeEEEecCCccccC
Q 039274 29 CRTSSKSSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTM 72 (96)
Q Consensus 29 C~~~~k~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTm 72 (96)
|+ +|+|||||||.++++|+++|++|||++.+.||++|++||+
T Consensus 4 c~--~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~ 45 (45)
T 1hym_A 4 CP--GKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45 (45)
T ss_dssp CC--SCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred CC--CCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence 87 8999999999999999999999999999999999999996
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.25 E-value=2.9e-12 Score=67.91 Aligned_cols=24 Identities=54% Similarity=1.262 Sum_probs=23.5
Q ss_pred CCcCCeEEEEECCCCCEEecCcCC
Q 039274 73 DYRCDRVWVWVDHHGIVKYTPRIG 96 (96)
Q Consensus 73 Dfr~dRV~V~vD~~g~V~~vP~vG 96 (96)
||+|+||+||+|++|+|+++|+||
T Consensus 1 Df~~~RVrvfvd~~g~V~~~P~iG 24 (26)
T 1hym_B 1 DFRCNRVRIWVNKRGLVVSPPRIG 24 (26)
T ss_dssp CCCTTEEEEEEETTTEEECCSBCC
T ss_pred CCCCCEEEEEECCCCcEEECCccc
Confidence 899999999999999999999998
No 11
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=65.61 E-value=12 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=18.6
Q ss_pred CCccccccCcchHHHHHHHHHHc
Q 039274 34 KSSWPELVGVKGEVAAEIIMREN 56 (96)
Q Consensus 34 k~sWPELVG~~~~~A~~~I~~e~ 56 (96)
...-|+|+|.+.++|...++...
T Consensus 7 ~v~vPdv~G~~~~~A~~~L~~~g 29 (139)
T 2kuf_A 7 TKDIPDVAGQTVDVAQKNLNVYG 29 (139)
T ss_dssp EEEECCCCSSBHHHHHHHHHHHH
T ss_pred ceeCCCcCCCCHHHHHHHHHHCC
Confidence 34578999999999998887653
No 12
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=57.04 E-value=11 Score=21.78 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=18.5
Q ss_pred CccccccCcchHHHHHHHHHHcC
Q 039274 35 SSWPELVGVKGEVAAEIIMRENG 57 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~p 57 (96)
..-|+|+|.+.++|...++...-
T Consensus 8 v~VPdv~G~~~~~A~~~L~~~Gl 30 (71)
T 3ouv_A 8 KDIPDVAGQTVDVAQKNMNVYGF 30 (71)
T ss_dssp EECCCCTTCBHHHHHHHHHHTTC
T ss_pred eECCCcCCCCHHHHHHHHHHCCC
Confidence 45699999999999988776533
No 13
>2kud_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=47.38 E-value=22 Score=23.12 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=18.3
Q ss_pred CccccccCcchHHHHHHHHHHc
Q 039274 35 SSWPELVGVKGEVAAEIIMREN 56 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~ 56 (96)
..-|+|+|.+.++|...++...
T Consensus 9 v~vPdv~G~~~~~A~~~L~~~g 30 (140)
T 2kud_A 9 VQVPDVRGQSSADAIATLQNRG 30 (140)
T ss_dssp ECCCCCTTSBHHHHHHHHHHHT
T ss_pred eECCccCCCCHHHHHHHHHHCC
Confidence 4579999999999998887654
No 14
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=44.98 E-value=52 Score=21.23 Aligned_cols=25 Identities=16% Similarity=0.124 Sum_probs=20.0
Q ss_pred CccccccCcchHHHHHHHHHHcCCC
Q 039274 35 SSWPELVGVKGEVAAEIIMRENGKV 59 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~p~v 59 (96)
..-|+|+|++.++|...+....-.+
T Consensus 76 v~vPd~~G~~~~~A~~~L~~~Gl~~ 100 (138)
T 2kue_A 76 KDIPDVAGQTVDVAQKNLNVYGFTK 100 (138)
T ss_dssp EECCCCTTSBHHHHHHHHHHHSCSC
T ss_pred eeCCccCCCCHHHHHHHHHHCCCee
Confidence 4679999999999998887764443
No 15
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=42.48 E-value=24 Score=23.13 Aligned_cols=24 Identities=13% Similarity=-0.064 Sum_probs=18.4
Q ss_pred HHHHHHHHcCCCeEEEecCCcccc
Q 039274 48 AAEIIMRENGKVVAIIVKEGFEVT 71 (96)
Q Consensus 48 A~~~I~~e~p~v~v~Vl~pGs~vT 71 (96)
..++|..+||++.++|...+.++-
T Consensus 27 iVeaI~~DNP~~~v~V~d~pa~vr 50 (103)
T 3ge3_E 27 VIETAEIDNPGKEITVEDRRAYVR 50 (103)
T ss_dssp HHHHHHHHCTTSCCEEEECSSEEE
T ss_pred HHHHHHhHCcCCEEEEeecCCEEE
Confidence 357899999999987766666653
No 16
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=39.61 E-value=74 Score=23.03 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=35.8
Q ss_pred CccccccCcchHHHHHHHHHHcCCCeEEEe-------cCCccccCCCc-------CCeEEEEECCCCCEEecCc
Q 039274 35 SSWPELVGVKGEVAAEIIMRENGKVVAIIV-------KEGFEVTMDYR-------CDRVWVWVDHHGIVKYTPR 94 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl-------~pGs~vTmDfr-------~dRV~V~vD~~g~V~~vP~ 94 (96)
..-|+|+|++.++|...++...- .+.+. +.|..+..+=. -..|.|++...-.-+.+|-
T Consensus 9 v~VP~v~G~~~~~A~~~L~~~gl--~~~~~~~~s~~~~~g~Vi~q~P~~G~~v~~g~~V~l~vs~G~~~v~vPd 80 (275)
T 2kui_A 9 VQVPDVRGQSSADAIATLQNRGF--KIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNVSTGPEQREIPD 80 (275)
T ss_dssp EECCCCTTSCHHHHHHHHHHHTC--EEEEEEEESSSSSCSSCSCCCTTTTSEECSSCEEEEEEEESCCEEECCC
T ss_pred EECCccCCCCHHHHHHHHHHCCC--eeEEeeeeCCCCCCCEEEEecCCCCCCcCCCCEEEEEEecCCcccccCc
Confidence 45799999999999988877643 33322 34544444322 3568888865433445663
No 17
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation, membran transferase; 2.20A {Staphylococcus aureus subsp} PDB: 3m9g_A
Probab=30.97 E-value=1.4e+02 Score=22.00 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.2
Q ss_pred CCccccccCcchHHHHHHHHHH
Q 039274 34 KSSWPELVGVKGEVAAEIIMRE 55 (96)
Q Consensus 34 k~sWPELVG~~~~~A~~~I~~e 55 (96)
...-|+|+|++.++|...+...
T Consensus 6 ~v~VPdv~G~t~~eA~~~L~~~ 27 (294)
T 3py9_A 6 YEETPDVIGKSVKEAEQIFNKN 27 (294)
T ss_dssp --CCCCCTTCCHHHHHHHHHHT
T ss_pred eeECCCcCCCCHHHHHHHHHHC
Confidence 3567999999999999887664
No 18
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=29.00 E-value=1.6e+02 Score=21.16 Aligned_cols=23 Identities=9% Similarity=0.040 Sum_probs=18.7
Q ss_pred CccccccCcchHHHHHHHHHHcC
Q 039274 35 SSWPELVGVKGEVAAEIIMRENG 57 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~p 57 (96)
..-|+|+|++.++|...++...-
T Consensus 76 v~vPdv~G~s~~~A~~~L~~~Gl 98 (275)
T 2kui_A 76 REIPDVSTLTYAEAVKKLTAAGF 98 (275)
T ss_dssp EECCCCCTTCHHHHHHHHHHTSC
T ss_pred cccCccCCCCHHHHHHHHHHCCC
Confidence 45799999999999988876543
No 19
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=28.44 E-value=33 Score=23.18 Aligned_cols=29 Identities=24% Similarity=0.546 Sum_probs=23.5
Q ss_pred CCCccccccCcchHHHHHHHHHHcCCCeEE
Q 039274 33 SKSSWPELVGVKGEVAAEIIMRENGKVVAI 62 (96)
Q Consensus 33 ~k~sWPELVG~~~~~A~~~I~~e~p~v~v~ 62 (96)
.|+-| ||||++-.+..+++...+.....+
T Consensus 8 ~ktlw-elv~~~~~~l~~fl~~h~~~~~l~ 36 (128)
T 3da5_A 8 KKTLW-ELVGRNKDALRDFLKEHRGTILLR 36 (128)
T ss_dssp CCCHH-HHTTSCHHHHHHHHHHTTTTEEEE
T ss_pred HHHHH-HHHCCCHHHHHHHHHHhhcceeHH
Confidence 56778 999999988888888887766554
No 20
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=26.82 E-value=45 Score=19.96 Aligned_cols=15 Identities=27% Similarity=0.156 Sum_probs=12.1
Q ss_pred eEEEEECCCCCEEec
Q 039274 78 RVWVWVDHHGIVKYT 92 (96)
Q Consensus 78 RV~V~vD~~g~V~~v 92 (96)
.|.+.+|.+|.|..+
T Consensus 28 ~v~~~i~~~G~v~~~ 42 (90)
T 1u07_A 28 KVKFDVTPDGRVDNV 42 (90)
T ss_dssp EEEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEE
Confidence 467789999998875
No 21
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=24.94 E-value=47 Score=22.99 Aligned_cols=21 Identities=33% Similarity=0.311 Sum_probs=14.9
Q ss_pred ccCCCcCCeEEEEEC-CCCCEE
Q 039274 70 VTMDYRCDRVWVWVD-HHGIVK 90 (96)
Q Consensus 70 vTmDfr~dRV~V~vD-~~g~V~ 90 (96)
.++.-.+.||-||+| +.|.|+
T Consensus 122 l~~~~~p~rVGVfLDye~G~lS 143 (186)
T 3uv9_A 122 LSVIICPDRVGVFVDYEACTVS 143 (186)
T ss_dssp CCCSSCCSEEEEEEETTTTEEE
T ss_pred ccccccCCEEEEEeecCCCEEE
Confidence 345567889999999 446665
No 22
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=23.41 E-value=73 Score=19.29 Aligned_cols=19 Identities=5% Similarity=0.092 Sum_probs=15.6
Q ss_pred CcCCeEEEEECCCCCEEec
Q 039274 74 YRCDRVWVWVDHHGIVKYT 92 (96)
Q Consensus 74 fr~dRV~V~vD~~g~V~~v 92 (96)
.....+.|+.|++|+|+++
T Consensus 53 ~~~~~l~V~Fd~~g~V~~~ 71 (88)
T 2yh9_A 53 VTQQTLTLTFNSSGVLTNI 71 (88)
T ss_dssp SSCCEEEEEECTTSBEEEE
T ss_pred cEEEEEEEEEcCCCeEEEE
Confidence 3356799999999999886
No 23
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=23.27 E-value=47 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.033 Sum_probs=31.6
Q ss_pred CccccccCcchHHHHHHHHHHcCCCeEEEecCCccccCCC
Q 039274 35 SSWPELVGVKGEVAAEIIMRENGKVVAIIVKEGFEVTMDY 74 (96)
Q Consensus 35 ~sWPELVG~~~~~A~~~I~~e~p~v~v~Vl~pGs~vTmDf 74 (96)
..=|+-+|.+--.+........|+-...|+--|++.|.|+
T Consensus 101 y~~P~~lG~DR~~~~vaA~~~~~~~~~iVVD~GTA~T~d~ 140 (266)
T 3djc_A 101 YRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCA 140 (266)
T ss_dssp CSSGGGSCHHHHHHHHHHHHHSTTSEEEEEEESSEEEEEE
T ss_pred CCChhhhHHHHHHHHHHHHHhcCCCCEEEEECCCeeEEEE
Confidence 3447789999877766666777776788999999999995
No 24
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=21.33 E-value=46 Score=20.62 Aligned_cols=26 Identities=15% Similarity=-0.024 Sum_probs=13.0
Q ss_pred CCccccCCCcCCeEEEEECCCC-CEEe
Q 039274 66 EGFEVTMDYRCDRVWVWVDHHG-IVKY 91 (96)
Q Consensus 66 pGs~vTmDfr~dRV~V~vD~~g-~V~~ 91 (96)
+|.+++.++....|-|+-+++| .|..
T Consensus 18 ~g~~~~~~~~g~~i~v~r~~~g~~~~A 44 (113)
T 2jo6_A 18 PETGVCALLGDEQVAIFRPYHSDQVFA 44 (113)
T ss_dssp TTEEEEEEETTEEEEEEECSSSSCCEE
T ss_pred CCCeEEEEECCEEEEEEEECCCCEEEE
Confidence 4444444444455666665555 3443
Done!