BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039275
(153 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 100/178 (56%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGYS+ G +A+ FG++ G DE+T+V +L A G G+WI ++ E
Sbjct: 198 MISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENE 257
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+DL+S+ S+ Y G + AR D V+ AMI+GY+Q G +EA+ F
Sbjct: 258 MDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFS 317
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV+ D++T+V VL+A + GALDFGK ++I+++TA+I+MYAK
Sbjct: 318 GMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAK 375
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAG-RFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQI 54
MI G + +FN +E + +++ G+ + T V A + G + L+
Sbjct: 96 MIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNHGQCAHSGVLKS 155
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L + S + Y+ G + AR D VS +MISGYS+ G +A+ F
Sbjct: 156 GLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLF 215
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G++ G DE+T+V +L A G L G N F+ +A+I MY K
Sbjct: 216 GEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGK 274
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 93.2 bits (230), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGYS+ G EA+ F ++ G DE+T+V VL A G G W+ L+ +
Sbjct: 200 MISGYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKK 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++++SY S+ Y G + AR D V+ A+I+GY+Q G NEA+ F
Sbjct: 260 MEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFN 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G H D VTM+ VL+A S GALD GK ++++ +A+I+MYAK
Sbjct: 320 GMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAK 377
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q G NEA+ F + G H D VTM+ VL+A S GA L K ++
Sbjct: 301 IITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKG 360
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ YA G + A ++ VS AMIS + G+ EAL F
Sbjct: 361 LQHDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFR 420
Query: 107 KL--ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ ++ V +++T + VL+A G +D G+
Sbjct: 421 RMSKDNGTVQPNDITFIGVLSACVHAGLVDEGRQ 454
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 26/169 (15%)
Query: 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIELDLSSYSLS 64
+++ +E + KL+SLG+ + T + A + K + LD Y
Sbjct: 108 KYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNH 167
Query: 65 SKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
S + YA G + AR D VS +MISGYS+ G EA+ F ++ G
Sbjct: 168 SLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMREEGFEP 227
Query: 116 DEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
DE+T+V VL A G L G+ N ++ +A+I+MY K
Sbjct: 228 DEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGK 276
>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Glycine max]
Length = 634
Score = 89.7 bits (221), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G ++AL F ++ G +E T VLT+ G ++L +++ I+L+
Sbjct: 130 MISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLN 189
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y SS YA G+I AR D VSC A+ISGY+Q G EALE F
Sbjct: 190 YEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFR 249
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ ++ VT VL A SG ALD GK S + L ++I+MY+K
Sbjct: 250 RLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSK 307
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
+ISGY+Q G EALE F +L+ G+ ++ VT VLTA SG A K++ L +
Sbjct: 231 IISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSE 290
Query: 58 LSSYSL--SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+ SY + +S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 291 VPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFN 350
Query: 107 -KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V D VT++ VL+ S G D G
Sbjct: 351 LMIDENKVKPDSVTVLAVLSGCSHGGLEDKG 381
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMIS YSQ G ++AL F ++ G +E T VL + G G+
Sbjct: 122 RNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQI 181
Query: 138 ----------SNIFLTTAIIEMYAK 152
+++++ +++++MYAK
Sbjct: 182 HSHIIKLNYEAHVYVGSSLLDMYAK 206
>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
Length = 590
Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MISGYSQ R EAL+ F K+ G +E T+ VLT+ SGP + K+ L ++ +
Sbjct: 82 MISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTN 141
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA S I+ AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 142 FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFR 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIEMYAK 152
+L S G+ + VT ++ A SG +LD+GK + L ++I+MY+K
Sbjct: 202 QLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSK 259
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+ISGY+Q G EAL+ F +L S G+ + VT ++TA SG A IL KE
Sbjct: 183 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242
Query: 52 LQ--IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L S + SK + +S R+ L R VS AM+ GY + G +E + F
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L V D VT++ VL+ S G +D G
Sbjct: 303 DLHK-EVKPDSVTLLAVLSGCSHGGLVDEG 331
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MISGYSQ R EAL+ F K+ G +E T+ VL + SGP ++ GK
Sbjct: 74 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAK 158
>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
Length = 583
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MISGYSQ R EAL+ F K+ G +E T+ VLT+ SGP + K+ L ++ +
Sbjct: 82 MISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTN 141
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA S I+ AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 142 FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFR 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L S G+ + VT ++ A SG +LD+GK + L ++I+MY+K
Sbjct: 202 QLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSK 259
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+ISGY+Q G EAL+ F +L S G+ + VT ++TA SG A IL KE
Sbjct: 183 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 242
Query: 52 LQ--IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L S + SK + +S R+ L R VS AM+ GY + G +E + F
Sbjct: 243 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L V D VT++ VL+ S G +D G
Sbjct: 303 DLHK-EVKPDSVTLLAVLSGCSHGGLVDEG 331
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MISGYSQ R EAL+ F K+ G +E T+ VL + SGP ++ GK
Sbjct: 74 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAK 158
>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 615
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/178 (36%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MISGYSQ R EAL+ F K+ G +E T+ VLT+ SGP + K+ L ++ +
Sbjct: 114 MISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTN 173
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA S I+ AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 174 FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFR 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L S G+ + VT ++ A SG +LD+GK + L ++I+MY+K
Sbjct: 234 QLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSK 291
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+ISGY+Q G EAL+ F +L S G+ + VT ++TA SG A IL KE
Sbjct: 215 IISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKE 274
Query: 52 LQ--IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L S + SK + +S R+ L R VS AM+ GY + G +E + F
Sbjct: 275 LPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFK 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L V D VT++ VL+ S G +D G
Sbjct: 335 DLHK-EVKPDSVTLLAVLSGCSHGGLVDEG 363
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MISGYSQ R EAL+ F K+ G +E T+ VL + SGP ++ GK
Sbjct: 106 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 165
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 166 HSLLVKTNFESHMFVGSSLLDMYAK 190
>gi|125556054|gb|EAZ01660.1| hypothetical protein OsI_23695 [Oryza sativa Indica Group]
Length = 252
Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 87/165 (52%), Gaps = 19/165 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MISGYSQ R EAL+ F K+ G +E T+ VLT+ SGP + K+ L ++ +
Sbjct: 82 MISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTN 141
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA S I+ AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 142 FESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFR 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-----SNIFLTTAI 146
+L S G+ + VT ++ A SG +LD+GK S IFL I
Sbjct: 202 QLYSEGMQCNHVTFTTLVTALSGLASLDYGKQTEDWSMIFLIQVI 246
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MISGYSQ R EAL+ F K+ G +E T+ VL + SGP ++ GK
Sbjct: 74 RSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQV 133
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 134 HSLLVKTNFESHMFVGSSLLDMYAK 158
>gi|255582620|ref|XP_002532091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528238|gb|EEF30293.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 446
Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 93/178 (52%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY++ G EA+ F ++ G E+T+V +L A G W+ A +
Sbjct: 199 MISGYTKMGFAREAVRLFMEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKK 258
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++L+SY+ S+ Y G + AR D V+ AMI+GY+Q G +EA+ F
Sbjct: 259 MELNSYTASALIDMYGKCGDLMSARRVFDNMAEKDIVTWNAMITGYAQNGASDEAMTLFN 318
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ +E+TMVVVL+A + GALD GK ++++ +A+++MYAK
Sbjct: 319 VMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRGLQHDVYVASALVDMYAK 376
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q G +EA+ F + G+ +E+TMVVVL+A + GA W+ Q
Sbjct: 300 MITGYAQNGASDEAMTLFNVMREAGITPNEITMVVVLSACASIGALDLGKWVEMYASQRG 359
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ YA G + A ++ VS AMIS + GR EAL F
Sbjct: 360 LQHDVYVASALVDMYAKCGSLDNALRVFENMPHKNEVSWNAMISALAFHGRAREALSLFS 419
Query: 107 K-LESLGVHTDEVTMVVVLAAS 127
+ L V +++T + V AA
Sbjct: 420 RMLNGSTVRPNDITFIGVFAAC 441
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGR-FNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQI 54
MI G + R ++ A++ + +++SLG+ + T + + + G + L++
Sbjct: 97 MIRGLTTTWRNYSLAIQLYYQMKSLGLKPNNFTFPFLFISCANLVALHCGQIAHSLVLKM 156
Query: 55 ELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPF 105
+ S+ S + YA ++ L RD VS +MISGY++ G EA+ F
Sbjct: 157 GFNNDSHINHSLITMYAKCSKLDSARKVFDEILERDIVSWNSMISGYTKMGFAREAVRLF 216
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G E+T+V +L A G L GK N + +A+I+MY K
Sbjct: 217 MEMREQGFEPVEMTLVSILGACGDLGDLALGKWVEALIGDKKMELNSYTASALIDMYGK 275
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 98/213 (46%), Gaps = 61/213 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI GY++ + AL FG++++ G+ DE T V + + S + K++ ++
Sbjct: 183 MIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNL 242
Query: 57 --------------DL---------------------SSYSLSSKTSRYAHSGRIRLAR- 80
D+ S+ + SS YA G I +AR
Sbjct: 243 RSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARK 302
Query: 81 --------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132
D +S AMISGYSQAG+ +EALE F ++E+LG+ DEVT+V VL+A + GA
Sbjct: 303 LFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGA 362
Query: 133 LDFGK-------------SNIFLTTAIIEMYAK 152
D GK N LT A+++MYAK
Sbjct: 363 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAK 395
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MISGYSQAG+ +EALE F ++E+LG+ DEVT+V VL+A + GA+ L K L +
Sbjct: 318 MISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENG 377
Query: 56 -LDLSSYSLSSKTSRYAHSGRI--------RLARDPVS---CKAMISGYSQAGRFNEALE 103
+ ++ ++ YA G I R+ ++ + +MI+G +Q G A+
Sbjct: 378 VFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAIT 437
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +L S G+ DEVT V VL A G ++ GK
Sbjct: 438 VFRELISTGLKPDEVTFVGVLCACGHSGLIEEGK 471
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L RD VS MI GY++ + AL FG++++ G+ DE T V + + S + GK
Sbjct: 173 LVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGK 232
Query: 138 --------------SNIFLTTAIIEMYAK 152
SNI L +AI++MYAK
Sbjct: 233 QIHAQVYKNLRSIDSNILLKSAIVDMYAK 261
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 97/179 (54%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQI 54
MI+GY++AG EA+E FG++ G DE+++V VL A G W+ ++
Sbjct: 188 MIAGYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER 247
Query: 55 ELDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+SY S+ S YA G + R+ ARD ++ A+ISGY+Q G +EA+ F
Sbjct: 248 GMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLF 307
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ V +++T+ VL+A + GALD GK +IF+ TA+I+MYAK
Sbjct: 308 HAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAK 366
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 24/128 (18%)
Query: 49 AKELQIELDLSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGR 97
A L +L L S ++ S + Y+ GR+ AR D VS +MI+GY++AG
Sbjct: 138 AHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGC 197
Query: 98 FNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTT 144
EA+E FG++ G DE+++V VL A G L+ G+ N ++ +
Sbjct: 198 AREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGS 257
Query: 145 AIIEMYAK 152
A+I MYAK
Sbjct: 258 ALISMYAK 265
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGY+Q G +EA+ F ++ V +++T+ VL+A + GA L K++ Q
Sbjct: 290 VISGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRG 349
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + A ++ S AMIS + G+ EAL F
Sbjct: 350 FQHDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQ 409
Query: 107 KL--ESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
+ E G +++T V +L+A G ++ G S +F IE Y+ M
Sbjct: 410 CMSDEGGGARPNDITFVGLLSACVHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCM 464
>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Brachypodium distachyon]
Length = 614
Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MISGYSQ+GR EALE F ++ G +E T+ VLT+ + ++ L ++ +
Sbjct: 113 MISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTN 172
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS Y SG I+ AR D VSC A+ISGY+Q G +EAL+ F
Sbjct: 173 FESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFR 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIEMYAK 152
+L S G+ + VT +L + SG +L++GK I L ++I+MY+K
Sbjct: 233 QLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSK 290
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
+ISGY+Q G +EAL+ F +L S G+ + VT +LT+ SG + IL KE
Sbjct: 214 IISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKE 273
Query: 52 LQ--IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L I L S + SK + +S R+ R +S AM+ GY + G E ++ F
Sbjct: 274 LPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFR 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ V D VT++ VL+ S G +D G
Sbjct: 334 TMTE-EVKPDSVTLLAVLSGCSHGGLVDEG 362
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL------ 133
R+ VS AMISGYSQ+GR EALE F ++ G +E T+ VL + ++
Sbjct: 105 RNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQV 164
Query: 134 -------DFGKSNIFLTTAIIEMYAK 152
+F +S++F+ +++++MY K
Sbjct: 165 HSLVVKTNF-ESHMFVGSSLLDMYGK 189
>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 617
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 91/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MISGYS+AGR +A++ F K+E G DE T+V +L A + G + L+ +
Sbjct: 201 MISGYSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKK 260
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS++ S + Y G + AR D V+ AMI+ YSQ G+ +EA + F
Sbjct: 261 IGLSTFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFF 320
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E GV D T+ VL+A GAL+ GK NI++ T +++MY K
Sbjct: 321 EMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGK 378
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 23/173 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MI+ YSQ G+ +EA + F ++E GV D T+ VL+A GA L K ++ I
Sbjct: 302 MITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKRIETHASEIS 361
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y + Y G I A ++ + AMI+ Y+ G EAL F
Sbjct: 362 LQHNIYVATGLVDMYGKCGHIEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLF- 420
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
+ + V +VT + VL+A G +D G S++F IE Y +
Sbjct: 421 --DQMPVPPSDVTFIGVLSACVHAGLVDQGCRYFHEMSSLFGLVPKIEHYTNI 471
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
MI G + +E AL + +++ G+ D T V A G G + + ++
Sbjct: 99 MIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSLFKV 158
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPF 105
L+ + S YA G + AR VS +MISGYS+AGR +A++ F
Sbjct: 159 GLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISGYSEAGRAKDAMDLF 218
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+E G DE T+V +L A + G L G+ + FL + +I MY K
Sbjct: 219 RKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLSTFLGSKLITMYGK 277
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 92/180 (51%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
+I GYSQ ++ E L F + + + D VTMV ++ A S G W A KE
Sbjct: 96 LICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENN 155
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+E+D+ Y ++ Y G + AR D +S +MI+GYSQA +F++A++
Sbjct: 156 LEIDV--YLGNTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKL 213
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
F ++ + V D+VT+ VL+A + G LD G +++I++ ++I+MY K
Sbjct: 214 FQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCK 273
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L RD VS +I GYSQ ++ E L F + + + D VTMV ++ A S G +F
Sbjct: 86 LDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFAD 145
Query: 138 S------------NIFLTTAIIEMYAKM 153
S +++L +I+MY ++
Sbjct: 146 SMVKYIKENNLEIDVYLGNTLIDMYGRL 173
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI+GY+Q+GRF EAL F +++ V +E TMV VL+A + G+ WI
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG 294
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
L L L +++ Y+ G + ARD +S MI GYS + EAL
Sbjct: 295 LGSNLRL----VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEM 149
F K++ V ++VT V +L A + GALD GK +N L T++I+M
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDM 410
Query: 150 YAK 152
YAK
Sbjct: 411 YAK 413
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI GYS + EAL F K++ V ++VT V +L A + GA L K + +D
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKF 395
Query: 58 --LSSYSL-SSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
L++ SL +S YA G I A+ S AMISG + G N ALE F
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G D++T V VL+A S G ++ G+
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS AMI+GY+Q+GRF EAL F +++ V +E TMV VL+A + G+L+ G
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+ L A+I+MY+K
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSK 311
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG + G N ALE F ++ G D++T V VL+A S G L ++ + +
Sbjct: 438 MISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM-VED 496
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEA 101
Y +S K Y MI +AG F+EA
Sbjct: 497 YDISPKLQHYG---------------CMIDLLGRAGLFDEA 522
>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGYSQ G +EAL F ++ +E T VL++ +G + L +++ + +
Sbjct: 82 MISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRN 141
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y SS YA +GRI AR D VSC A+ISGY+Q G EALE F
Sbjct: 142 YENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFC 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L+ G+ ++ VT +L A SG ALD GK + L ++I+MY+K
Sbjct: 202 RLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSK 259
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+ISGY+Q G EALE F +L+ G+ ++ VT +LTA SG A K+ L+ E
Sbjct: 183 IISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCE 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
L +S Y+ G + AR PV S AM+ GYS+ G+ E ++ F
Sbjct: 243 LPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFK 302
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E V D VT + VL+ S G D G
Sbjct: 303 LMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMISGYSQ G +EAL F ++ +E T VL++ +G + G+
Sbjct: 74 RNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQI 133
Query: 138 ----------SNIFLTTAIIEMYAK 152
++IF+ +++++MYAK
Sbjct: 134 HSHIFKRNYENHIFVGSSLLDMYAK 158
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI+GY+Q+GRF EAL F +++ V +E TMV VL+A + G+ WI
Sbjct: 235 MIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG 294
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
L L L +++ Y+ G + ARD +S MI GYS + EAL
Sbjct: 295 LGSNLRL----VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEAL 350
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEM 149
F K++ V ++VT V +L A + GALD GK +N L T++I+M
Sbjct: 351 ALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDM 410
Query: 150 YAK 152
YAK
Sbjct: 411 YAK 413
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI GYS + EAL F K++ V ++VT V +L A + GA L K + +D
Sbjct: 336 MIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDKKF 395
Query: 58 --LSSYSL-SSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
L++ SL +S YA G I A+ S AMISG + G N ALE F
Sbjct: 396 LGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELF 455
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G D++T V VL+A S G ++ G+
Sbjct: 456 RQMRDEGFEPDDITFVGVLSACSHAGLVELGR 487
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS AMI+GY+Q+GRF EAL F +++ V +E TMV VL+A + G+L+ G
Sbjct: 227 RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWV 286
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+ L A+I+MY+K
Sbjct: 287 RSWIEDHGLGSNLRLVNALIDMYSK 311
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG + G N ALE F ++ G D++T V VL+A S G L ++ + +
Sbjct: 438 MISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSM-VED 496
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEA 101
Y +S K Y MI +AG F+EA
Sbjct: 497 YDISPKLQHYG---------------CMIDLLGRAGLFDEA 522
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M +GY+++G + E ++ F ++ L + DEVT+V VLTA G WI +
Sbjct: 196 MFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKG 255
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++S YA G++ AR D V+ AMISGYSQA R EAL+ F
Sbjct: 256 LKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFH 315
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF------------LTTAIIEMYAK 152
+++ + +E+TMV +L++ + GAL+ GK F L TA+++ YAK
Sbjct: 316 EMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAK 373
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----W----ILAKE 51
MISGYSQA R EAL+ F +++ + +E+TMV +L++ + GA W I K
Sbjct: 297 MISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKR 356
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR-----LARDPV----SCKAMISGYSQAGRFNEAL 102
+++ + L + + YA G + + PV S +I G + G+ +AL
Sbjct: 357 MKLTVTLGTALMDF----YAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKAL 412
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
E F + V ++VT + VL+A S G +D G+
Sbjct: 413 EYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRD 448
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI G++ +EA+ F ++ V DE T +L S G I A ++
Sbjct: 95 MIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCG 154
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFG 106
+ ++ YA+ G + +AR D +S + +M +GY+++G + E ++ F
Sbjct: 155 FGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFH 214
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ L + DEVT+V VL A L+ G K N L T++++MYAK
Sbjct: 215 EMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAK 272
>gi|3128231|gb|AAC26711.1| hypothetical protein [Arabidopsis thaliana]
gi|20197159|gb|AAM14947.1| hypothetical protein [Arabidopsis thaliana]
Length = 617
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
MISGYS+AG +A++ F K+E G DE T+V +L A S G L +E+ I +
Sbjct: 200 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKK 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS++ S S Y G + AR D V+ AMI+ YSQ G+ +EA + F
Sbjct: 260 IGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFF 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E GV D T+ VL+A GAL+ GK NI++ T +++MY K
Sbjct: 320 EMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGK 377
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEA-LEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
MI G + +EA L + +++ G+ D+ T V A + G G + + ++
Sbjct: 98 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 157
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ + S YA G++ AR D VS +MISGYS+AG +A++ F
Sbjct: 158 GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLF 217
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+E G DE T+V +L A S G L G+ + FL + +I MY K
Sbjct: 218 RKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 276
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MI+ YSQ G+ +EA + F ++E GV D T+ VL+A GA L K+++ +
Sbjct: 301 MITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELS 360
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y + Y GR+ A ++ + AMI+ Y+ G EAL F
Sbjct: 361 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 420
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + V ++T + VL+A G + G
Sbjct: 421 R---MSVPPSDITFIGVLSACVHAGLVHQG 447
>gi|334184678|ref|NP_180987.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546770|sp|O64705.2|PP184_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g34400
gi|330253874|gb|AEC08968.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
MISGYS+AG +A++ F K+E G DE T+V +L A S G L +E+ I +
Sbjct: 204 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKK 263
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS++ S S Y G + AR D V+ AMI+ YSQ G+ +EA + F
Sbjct: 264 IGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFF 323
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E GV D T+ VL+A GAL+ GK NI++ T +++MY K
Sbjct: 324 EMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGK 381
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEA-LEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
MI G + +EA L + +++ G+ D+ T V A + G G + + ++
Sbjct: 102 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 161
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ + S YA G++ AR D VS +MISGYS+AG +A++ F
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLF 221
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+E G DE T+V +L A S G L G+ + FL + +I MY K
Sbjct: 222 RKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 280
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MI+ YSQ G+ +EA + F ++E GV D T+ VL+A GA L K+++ +
Sbjct: 305 MITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELS 364
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y + Y GR+ A ++ + AMI+ Y+ G EAL F
Sbjct: 365 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 424
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + V ++T + VL+A G + G
Sbjct: 425 R---MSVPPSDITFIGVLSACVHAGLVHQG 451
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQI 54
++SGY++ G EA+E FG+L E G DE+++V VL A G W+ ++
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER 248
Query: 55 ELDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++SY S+ S Y+ G + R+ +RD ++ A IS Y+Q G +EA+ F
Sbjct: 249 GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLF 308
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ GV ++VT+ VL+A + GALD GK +IF+ TA+I+MYAK
Sbjct: 309 HSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAK 367
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 15 LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-----LDLSSYSLSSKTSR 69
L + ++++L + + T V A + +A+ E LD ++++S +
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVT 119
Y G +AR D VS +++SGY++ G EA+E FG+L E G DE++
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 120 MVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+V VL A G L+ G K N ++ +A+I MY+K
Sbjct: 222 LVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSK 266
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-------I 54
IS Y+Q G +EA+ F ++ GV ++VT+ VL+A + GA L K++ +
Sbjct: 292 ISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGL 351
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ D+ + ++ YA G + A ++ S AMIS + G+ EAL F
Sbjct: 352 QHDI--FVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLF 409
Query: 106 GKLESLG--VHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
++ G +++T V +L+A G +D G S +F IE Y+ M
Sbjct: 410 ERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 81.6 bits (200), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 96/179 (53%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQI 54
++SGY++ G EA+E FG+L E G DE+++V VL A G W+ ++
Sbjct: 189 LLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVER 248
Query: 55 ELDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++SY S+ S Y+ G + R+ +RD ++ A IS Y+Q G +EA+ F
Sbjct: 249 GMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLF 308
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ GV ++VT+ VL+A + GALD GK +IF+ TA+I+MYAK
Sbjct: 309 HSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAK 367
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 27/165 (16%)
Query: 15 LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-----LDLSSYSLSSKTSR 69
L + ++++L + + T V A + +A+ E LD ++++S +
Sbjct: 102 LHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTVNSMVTM 161
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVT 119
Y G +AR D VS +++SGY++ G EA+E FG+L E G DE++
Sbjct: 162 YFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMS 221
Query: 120 MVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+V VL A G L+ G K N ++ +A+I MY+K
Sbjct: 222 LVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSK 266
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 26/176 (14%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-------I 54
IS Y+Q G +EA+ F ++ GV ++VT+ VL+A + GA L K++ +
Sbjct: 292 ISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYATHRGL 351
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ D+ + ++ YA G + A ++ S AMIS + G+ EAL F
Sbjct: 352 QHDI--FVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALSLF 409
Query: 106 GKLESLG--VHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
++ G +++T V +L+A G +D G S +F IE Y+ M
Sbjct: 410 ERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 465
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISGYSQ G +EAL F ++ G +E T VLT+ + + L +++ I+
Sbjct: 82 MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 141
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +G+I AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 142 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFR 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L+ G+ ++ VT VL A SG ALD G+ + L ++I+MY+K
Sbjct: 202 RLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSK 259
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY+Q G EAL+ F +L+ G+ ++ VT VLTA SG A +++
Sbjct: 183 IISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK 242
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S + SK +S RI + R +S AM+ GYS+ G EA+E F
Sbjct: 243 LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFK 302
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E V D VT + VL+ S G D G
Sbjct: 303 LMKEENKVKPDSVTFLAVLSGCSHGGMEDRG 333
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMISGYSQ G +EAL F ++ G +E T VL + + G+
Sbjct: 74 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 133
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAK 158
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISGYSQ G +EAL F ++ G +E T VLT+ + + L +++ I+
Sbjct: 549 MISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTS 608
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +G+I AR D VSC A+ISGY+Q G EAL+ F
Sbjct: 609 FESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFR 668
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L+ G+ ++ VT VL A SG ALD G+ + L ++I+MY+K
Sbjct: 669 RLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSK 726
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY+Q G EAL+ F +L+ G+ ++ VT VLTA SG A +++
Sbjct: 650 IISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAK 709
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S + SK +S RI + R +S AM+ GYS+ G EA+E F
Sbjct: 710 LPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFK 769
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E V D VT + VL+ S G D G
Sbjct: 770 LMKEENKVKPDSVTFLAVLSGCSHGGMEDRG 800
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMISGYSQ G +EAL F ++ G +E T VL + + G+
Sbjct: 541 RNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI 600
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 601 HSLVIKTSFESHIFVGSSLLDMYAK 625
>gi|255571614|ref|XP_002526753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533942|gb|EEF35667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 818
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/178 (34%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISGYS+ G E L F ++ + +E T+ VLT+ + L +++ I+ +
Sbjct: 547 MISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQIHSLIIKCN 606
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +GRI AR D VSC A+ISGY+Q G EALE F
Sbjct: 607 YDSHIFVGSSLLDMYAKAGRILEARMVFESLPERDVVSCTAIISGYAQLGLDEEALELFR 666
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+LE G+ ++ VT VL + SG ALD GK + L ++I+MY+K
Sbjct: 667 RLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVLRRELPFYVVLQNSMIDMYSK 724
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+ISGY+Q G EALE F +LE G+ ++ VT VLT+ SG A K+ L+ E
Sbjct: 648 IISGYAQLGLDEEALELFRRLEREGLSSNCVTYASVLTSLSGLAALDHGKQVHSHVLRRE 707
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L +S Y+ G + AR +S AM+ GY + G E +E F
Sbjct: 708 LPFYVVLQNSMIDMYSKCGSLNYARRIFDSMPERTVISWNAMLVGYGKHGMGREVVELFK 767
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
+ + V D VT++ VL+ S G D G
Sbjct: 768 LMRTENKVKPDSVTILAVLSGCSHGGFEDKG 798
Score = 42.0 bits (97), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMISGYS+ G E L F ++ + +E T+ VL + + + G+
Sbjct: 539 RNVVSWTAMISGYSRRGFAFETLHLFVRMLRSDIEPNEFTLATVLTSCTDASGSELGRQI 598
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 599 HSLIIKCNYDSHIFVGSSLLDMYAK 623
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+G ++ GRF +A F ++E GV D+V V +L A + P G + A+ ++
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D Y ++ S Y G + A R+ VS AMI+G++Q GR +EA F
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G+ + VT + +L A S P AL G+ S+ + TA++ MYAK
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAK 460
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
++ GY Q G + EA + ++ V D+ T V +L A + +EL +
Sbjct: 182 LLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAG 241
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D + ++ + + G I A RD V+ +MI+G ++ GRF +A F
Sbjct: 242 WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQ 301
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D+V V +L A + P AL+ GK + I++ TAI+ MY K
Sbjct: 302 RMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK 359
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G+ Q G+ A + F ++ G+ D++T +L A + P A + L + ++
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S Y G I A ++ S +MI+GY+Q GR EALE F
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELFY 705
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV D +T V L+A + G ++ G
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEG 735
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILA--KELQ 53
+++ S+AG+FNEA++ +++S + T +L + G G I K+
Sbjct: 81 VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSG 140
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ D+ + ++ + YA G A +D S ++ GY Q G + EA +
Sbjct: 141 VQPDI--FMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D+ T V +L A + +D G+ +++F+ TA+I M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+G ++ GRF +A F ++E GV D+V V +L A + P G + A+ ++
Sbjct: 283 MITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVG 342
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D Y ++ S Y G + A R+ VS AMI+G++Q GR +EA F
Sbjct: 343 WDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFN 402
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G+ + VT + +L A S P AL G+ S+ + TA++ MYAK
Sbjct: 403 KMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAK 460
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
++ GY Q G + EA + ++ V D+ T V +L A + +EL +
Sbjct: 182 LLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAG 241
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D + ++ + + G I A RD V+ +MI+G ++ GRF +A F
Sbjct: 242 WDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQ 301
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D+V V +L A + P AL+ GK + I++ TAI+ MY K
Sbjct: 302 RMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTK 359
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G+ Q G+ A + F ++ G+ D++T +L A + P A + L + ++
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHALITEAA 645
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S Y G I A ++ S +MI+GY+Q GR EALE F
Sbjct: 646 FDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFY 705
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV D +T V L+A + G ++ G
Sbjct: 706 QMQQEGVKPDWITFVGALSACAHAGLIEEG 735
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILA--KELQ 53
+++ S+AG+FNEA++ +++S + T +L + G G I K+
Sbjct: 81 VLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSG 140
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ D+ + ++ + YA G A +D S ++ GY Q G + EA +
Sbjct: 141 VQPDI--FMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D+ T V +L A + +D G+ +++F+ TA+I M+ K
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258
>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 614
Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 94/179 (52%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQI 54
MI+GY++AG EA+E F ++ G DE+++V +L A G W+ ++
Sbjct: 194 MIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGELGDLELGRWVEGFVVER 253
Query: 55 ELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+SY S+ S YA G + ARD ++ A+ISGY+Q G +EA+ F
Sbjct: 254 GMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVISGYAQNGMADEAILLF 313
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ V +++T+ VL+A + GALD GK +IF+ TA+I+MYAK
Sbjct: 314 HGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAK 372
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGY+Q G +EA+ F ++ V +++T+ VL+A + GA L K++ Q
Sbjct: 296 VISGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRG 355
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA SG + A ++ S AMIS + G+ EAL F
Sbjct: 356 FQHDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQ 415
Query: 107 KL--ESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
+ E G +++T V +L+A G +D G S +F IE Y+ M
Sbjct: 416 HMSDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCM 470
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELDLSS--YSLSSKTS 68
AL F ++ SL + D T + + + A L +L L S ++ S +
Sbjct: 106 ALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFKLALHSDPHTAHSLIT 165
Query: 69 RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEV 118
YA G + AR D VS +MI+GY++AG EA+E F ++ G DE+
Sbjct: 166 AYARCGLVASARKVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEM 225
Query: 119 TMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++V +L A G L+ G+ N ++ +A+I MYAK
Sbjct: 226 SLVSLLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAK 271
>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
cordifolium]
Length = 679
Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ GR+ EALE F ++ + V DE TM VL+ + G L +++ +D
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240
Query: 61 YSLSSK-----TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ EAL F
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
++ LG ++VTM+ +L A + GA+D G+ +N L T++I+MYAK
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAK 360
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ EAL F ++ LG ++VTM+ +L A + GA + + + + +D
Sbjct: 282 LIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL 341
Query: 61 YSLSSKTS-------RYAHSGRIRLAR---DPV------SCKAMISGYSQAGRFNEALEP 104
+ + TS YA G I A D + SC AMI G++ GR + A +
Sbjct: 342 KGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDL 401
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ D++T V +L+A S G D G+
Sbjct: 402 LSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR 434
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q G +A + F H D V+ ++T + G A+++ E+ +
Sbjct: 119 LISMYAQNGIVEDAHKVF----DTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPI-- 172
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ GR+ EALE F ++ + V DE TM
Sbjct: 173 -------------------KDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDESTM 213
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL+ + G ++ G+ SN+ L A+I++Y+K
Sbjct: 214 ATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSK 257
>gi|255540507|ref|XP_002511318.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550433|gb|EEF51920.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M SGY ++G + + + F ++ LGV +++T++ VL A G WI AK +++
Sbjct: 198 MFSGYVKSGYYEDTVRLFEEMRELGVGFNDITLISVLAACGRLADVELGEWI-AKYVRVN 256
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
LD + +++ YA G + AR D V+ AMISGYSQA R EA++ F
Sbjct: 257 GLDRNMNLVTALVDMYAKCGEVDKARRLFDQMDGRDVVAWSAMISGYSQARRCQEAVDLF 316
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ + +EVTMV VL+ + GAL GK + L TA+++ Y K
Sbjct: 317 NEMQMANLDPNEVTMVSVLSCCAALGALGTGKWIHLYIKRKGMNLTVTLGTALVDFYGK 375
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI ++ +AL F ++ V DE T L A S G I A+ ++
Sbjct: 97 MIRAFTLKRSPQKALAFFKQMLEEAVAFDEFTFPCTLKACSRLRGRKEGKQIHAQIVKYG 156
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L++ YA+ G I +AR D + +M SGY ++G + + + F
Sbjct: 157 FGSNCIVLNTLIHMYANCGEIEIARNMFDGMSERDIFAWNSMFSGYVKSGYYEDTVRLFE 216
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ LGV +++T++ VLAA ++ G+ N+ L TA+++MYAK
Sbjct: 217 EMRELGVGFNDITLISVLAACGRLADVELGEWIAKYVRVNGLDRNMNLVTALVDMYAK 274
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 79.0 bits (193), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 90/211 (42%), Gaps = 61/211 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
++ GY Q RF E L F + GV D VTMV V+ A + G W +A +E
Sbjct: 149 LVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENN 208
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR--------------------------------- 80
+E+D+ Y ++ Y G + LAR
Sbjct: 209 VEIDV--YLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAAREL 266
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
D +S MI+ YSQAG+F EAL F ++ V DE+T+ VL+A + G+L
Sbjct: 267 FDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSL 326
Query: 134 DFG------------KSNIFLTTAIIEMYAK 152
D G K++I++ A+I+MY K
Sbjct: 327 DVGEAAHDYIQKYDVKADIYVGNALIDMYCK 357
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI G+S + + NEA+ + + G+ + +T + + A + G+ I A+ L++
Sbjct: 48 MIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLG 107
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y ++ + Y G + LA RD VS +++ GY Q RF E L F
Sbjct: 108 FESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFE 167
Query: 107 KLESLGVHTDEVTMV-VVLAASS------GPGALDFGKSN-----IFLTTAIIEMYAK 152
+ GV D VTMV VVLA +S +D+ + N ++L +I+MY +
Sbjct: 168 AMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGR 225
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MI+ YSQAG+F EAL F ++ V DE+T+ VL+A + G A ++
Sbjct: 281 MITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYD 340
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ D+ Y ++ Y G + A +D VS ++ISG + G + AL+
Sbjct: 341 VKADI--YVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDY 398
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ V V +L A + G +D G
Sbjct: 399 FSRMLREVVQPSHGAFVGILLACAHAGLVDKG 430
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
M+SGY++ G ++E ++ F K+ L + D+VTM+ VL A G +I++K
Sbjct: 193 MLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKG 252
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L+ L++ S YA G++ AR D V+ AMISGY+QA R EAL
Sbjct: 253 LRRNNTLTT----SLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEAL 308
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF------------LTTAIIEMY 150
F +++ V+ +EVTMV VL + + GA + GK F L T +I+ Y
Sbjct: 309 NLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFY 368
Query: 151 AK 152
AK
Sbjct: 369 AK 370
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G + + AL F K+ V D+ T VL A S G + A L+
Sbjct: 92 MIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSG 151
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA+ G+I +AR V+ +M+SGY++ G ++E ++ F
Sbjct: 152 FKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFR 211
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K+ L + D+VTM+ VL A L+ G + N LTT++I+MYAK
Sbjct: 212 KILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAK 269
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+QA R EAL F +++ V+ +EVTMV VL + + GA+ K + +
Sbjct: 294 MISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKK 353
Query: 61 YSLS-----SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ YA G I + ++ + A+I G + G ALE F
Sbjct: 354 MKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFS 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V ++VT + VL+A S +D G+
Sbjct: 414 SMLENDVKPNDVTFIGVLSACSHACLVDQGR 444
>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 685
Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ SGY+ AG+ EA++ F K+ +GV D +V VL+A G WI+ ++E
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEME 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S+ ++ + YA G++ AR D V+ MI GY+ E +E F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFL 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D+ ++V L++ + GALD G+ +N+F+ A+I+MYAK
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G+ F+E L+ F + G++ T +VL A + A ++ +DL S
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTR------ASNRKLGIDLHS 135
Query: 61 Y-----------SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNE 100
+++S S Y+ SGR+ A R V+ A+ SGY+ AG+ E
Sbjct: 136 LVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHRE 195
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIE 148
A++ F K+ +GV D +V VL+A G LD G + N F+ T ++
Sbjct: 196 AIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVN 255
Query: 149 MYAK 152
+YAK
Sbjct: 256 LYAK 259
>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g08820
gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 685
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ SGY+ +GR EA++ F K+ +GV D +V VL+A G WI+ ++E
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S+ ++ + YA G++ AR D V+ MI GY+ E +E F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D+ ++V L++ + GALD G+ +N+F+ A+I+MYAK
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+G+ F+E L+ F + G++ T +VL A + + L +L +
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +++S S Y+ SGR+ A R V+ A+ SGY+ +GR EA++ F
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K+ +GV D +V VL+A G LD G + N F+ T ++ +YAK
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAK 259
>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 633
Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 76/155 (49%), Gaps = 18/155 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGYS AG F EALE F KLE LG+ DEV +V L+A + GA L + + + +
Sbjct: 326 MISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLGALELGRRIHRQYAGEN 385
Query: 61 YSL-------SSKTSRYAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEAL 102
++ S+ YA G I +A D ++ISG + GR A
Sbjct: 386 WTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFLYNSIISGLAHHGRGEYAK 445
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ LG+ D +T V VL+A G +DFGK
Sbjct: 446 NLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGK 480
Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 63/215 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IELDL 58
MI+G+++ G + FG++ + V DE T V +L+ S + + +++ + +L
Sbjct: 190 MINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYREL 249
Query: 59 SSY--------------------------------------SLSSKTSRYAHSGRIRLAR 80
+ + +S S YA G +++AR
Sbjct: 250 GCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKVAR 309
Query: 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
D VS AMISGYS AG F EALE F KLE LG+ DEV +V L+A + G
Sbjct: 310 RLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACARLG 369
Query: 132 ALDFGKS--------------NIFLTTAIIEMYAK 152
AL+ G+ N T+A+++MYAK
Sbjct: 370 ALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAK 404
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
RD VS MI+G+++ G + FG++ + V DE T V +L+ S G+
Sbjct: 180 FVRDCVSFNTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGR 239
Query: 138 S--------------NIFLTTAIIEMYAK 152
N+ L +++MYAK
Sbjct: 240 QVHGLVYRELGCFGGNVLLVNKLVDMYAK 268
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q G +EA++ F +++ G+ D++T LT+ S P K + +L +
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429
Query: 61 YSL-----SSKTSRYAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YSL S+ S YA G + RL R+ V+ AMI+G +Q GR EALE F
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
+++ G+ D+VT VL+A + G ++ G+ +
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHF 523
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G+ + ALE K++ V +++T +L + P A K++ + S
Sbjct: 269 LIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSG 328
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y +++ + Y G ++ AR D V+ AM++GY+Q G +EA++ F
Sbjct: 329 YGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFR 388
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ D++T L + S P L GKS +++L +A++ MYAK
Sbjct: 389 RMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAK 446
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI + + EA + + ++ G D+VT V +L A + P + +++ +E
Sbjct: 168 MIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAG 227
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+L +S YA G I A ++ V+ +I+GY+Q G+ + ALE
Sbjct: 228 LELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLE 287
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K++ V +++T +L + P AL+ GK I++ A+I MY K
Sbjct: 288 KMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCK 345
>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
Length = 792
Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+++ Y Q + EAL+ +G+++ GVH D VT V L A + GA K + E
Sbjct: 315 LMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECG 374
Query: 58 LSSYSLSSKT-SRYAHSG----------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
S + + + YA G R+R R+ AMIS Y+QAG EALE +
Sbjct: 375 FQSLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYD 434
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + G +E T VLAA S G L+ G SN+ + A++ MYAK
Sbjct: 435 QMVAEGTRPNEYTFSNVLAACSSSGDLEAGMKIHGHVENSELASNVAVQNALVTMYAK 492
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+QAG EALE + ++ + G +E T VL A S G L ++I + +
Sbjct: 416 MISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACSSSGD--LEAGMKIHGHVEN 473
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L+S + YA G + LA+ D VS AMI Y+Q G EAL+
Sbjct: 474 SELASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDL 533
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYA 151
+ + S GV DEVT+ L+A + G+L G +S++ + TA++ MY
Sbjct: 534 YQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYG 593
Query: 152 K 152
+
Sbjct: 594 R 594
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 23/174 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG--PGAWILAKELQIELDL 58
MIS Y+ G +EAL+ + ++++ G+ D +T L A + G I A+ + ++
Sbjct: 218 MISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVDGKAIHARIVSSNME- 276
Query: 59 SSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFGKLE 109
S + S+ + YA G + AR V ++++ Y Q + EAL+ +G+++
Sbjct: 277 SDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMD 336
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK---SNIF--------LTTAIIEMYAK 152
GVH D VT V L A + GAL GK S +F + TA++ MYAK
Sbjct: 337 HEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQSLVVHTALLTMYAK 390
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 30/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
M+S Y + G +N ALE + ++ G D++T +VL + S G+ A+E+
Sbjct: 115 MLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAP 174
Query: 55 ELDLSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
++ + SL + + Y G + AR D VS +MIS Y+ G +EAL+
Sbjct: 175 QIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDL 234
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------SNI---FLTTAIIEMYAK 152
+ ++++ G+ D +T L A + L GK SN+ F+ +A+I MYA+
Sbjct: 235 YQQMDADGIQPDSITFTSALLACT---KLVDGKAIHARIVSSNMESDFVGSALINMYAR 290
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y+Q G EAL+ + + S GV DEVT+ L+A + G+ L +E+ + L +
Sbjct: 517 MIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRV-LKN 575
Query: 61 YSLSSK-------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S S + Y GR+ AR D +S AM S Y+Q G ++ L+
Sbjct: 576 QSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAYAQQGHADQVLDL 635
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ ++ G+ +E+T +L S G L G
Sbjct: 636 YLEMVLHGIRPNEITFTSILVGCSHAGLLARG 667
>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Glycine max]
Length = 775
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 80/150 (53%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q G + AL +GK++ GV +++TM VL A S A K++ + +
Sbjct: 392 IITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYN 451
Query: 61 YSL-----SSKTSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+SL S+ ++ YA G + R+ ARD +S AMISG SQ GR NE LE F
Sbjct: 452 FSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFE 511
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ G D VT V +L+A S G +D G
Sbjct: 512 KMCLEGTKPDNVTFVNLLSACSHMGLVDRG 541
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
M++G++Q G ++AL+ F + G E T+V V+ A S A + ++ L++
Sbjct: 291 MVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLG 350
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+L Y LS+ YA G I AR C ++I+GY Q G + AL +G
Sbjct: 351 YELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYG 410
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K++ GV +++TM VL A S ALD GK I + +A+ MYAK
Sbjct: 411 KMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGIIKYNFSLEIPIGSALSAMYAK 468
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFG--KLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQ 53
MISGY+ +EA E F + E G + +E VL+A + G + + ++
Sbjct: 188 MISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMK 247
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L ++ + Y G + A ++ ++ AM++G++Q G ++AL+
Sbjct: 248 NGLVCIVSVANALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKL 307
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F + G E T+V V+ A S A+ G+ +++ +A+++MYAK
Sbjct: 308 FYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAK 367
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 80/158 (50%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + GRF EA+E F +++ G+ E TMV +L A + GA WI ++
Sbjct: 200 MISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNN 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSC-KAMISGYSQAGRFNEALEPFG 106
L+S +++ Y+ G I A + +SC ++I G + +GR NEA+ F
Sbjct: 260 FALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFS 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
KLES + D V+ + VL A + G +D K L +
Sbjct: 320 KLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMS 357
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
+ Y+Q G +E + G++ LG+ D+ +L G A+ + D
Sbjct: 103 VFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFD 162
Query: 58 LSSYSLS----SKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ +++ +K S R+ L R+ VS +MISGY + GRF EA+E F +++
Sbjct: 163 VVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQE 222
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG--------KSNIFLT----TAIIEMYAK 152
G+ E TMV +L A + GAL G K+N L TAII+MY+K
Sbjct: 223 EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSK 276
>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
Length = 526
Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F + V DE TMV V++A + G+ L +++ + +D
Sbjct: 191 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 250
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 251 FGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ 310
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 311 EMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAK 370
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 19/158 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI---LAKEL 52
+I GY+ + EAL F ++ G ++VTM+ +L A + GA WI + K L
Sbjct: 292 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRL 351
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALE 103
+ + SS L+S YA G I L R S AMI G++ G+ N A +
Sbjct: 352 KGVTNASSL-LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFD 410
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F K+ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 411 LFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR-HIF 447
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F + H D V+ ++ + G A++L E+ +
Sbjct: 129 LISMYVQNGRLEDARKVFDQ----SSHRDVVSYTALIKGYASRGYIENAQKLFDEIPV-- 182
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F + V DE TM
Sbjct: 183 -------------------KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 223
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SN+ + A+I++Y+K
Sbjct: 224 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 267
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ G+ N A + F K+ G+ D++T V +L+A S G LDL
Sbjct: 395 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGM----------LDLGR 444
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ S + Y +I + C MI G F EA E + ++ + D V
Sbjct: 445 HIFRSMSQDY----KITPKLEHYGC--MIDLLGHCGLFKEAKE---MIRTMPMEPDGVIW 495
Query: 121 VVVLAASSGPGALDFGKS 138
+L A ++ G+S
Sbjct: 496 CSLLKACKMHNNVELGES 513
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG +Q G+F E+L F K++ LGV D+VT+V VL + + G L K + LD +
Sbjct: 299 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQ 358
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I A +D S AMI G + G+ +AL+ F
Sbjct: 359 IRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFS 418
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ +G+ DEVT V VL A S G ++ G+ S I+ +E Y M
Sbjct: 419 EMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 471
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
MI GY + G E + F ++ + D +T+V+VL++ + G L ++L
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS 256
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
++L + ++ Y G AR + VS +MISG +Q G+F E+L F
Sbjct: 257 NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMF 316
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K++ LGV D+VT+V VL + + G L+ GK ++ F+ A+++MYAK
Sbjct: 317 RKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAK 375
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDLSS--YSLSSKT 67
E L + ++ S G+ D T+ VL A + A +E+ I++ L+S Y ++
Sbjct: 108 EGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLM 167
Query: 68 SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
YA IR AR D VS MI GY + G E + F ++ + D +
Sbjct: 168 RMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGM 227
Query: 119 TMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
T+V+VL++ + G L G+ ++F+ A+++MY K
Sbjct: 228 TLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLK 274
>gi|222619002|gb|EEE55134.1| hypothetical protein OsJ_02921 [Oryza sativa Japonica Group]
Length = 493
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
+I+GY + G N+AL+ F ++ V DEVT++ VL A + GA L L +
Sbjct: 79 IIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNG 138
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y SS S YA G + AR + V +MI+G +Q+GRF EA++ F
Sbjct: 139 FEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFR 198
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+ T+ V+++ GALD G+ + + ++I+MY+K
Sbjct: 199 DMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSK 256
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 44 GAWILAKELQIELDLSSYSLSS-----KTSRYAHSGRI------RLARDPVSCKAMISGY 92
G+ A L++ L S+ L++ + Y S R+ R A D VS +I+GY
Sbjct: 24 GSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGY 83
Query: 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNI 140
+ G N+AL+ F ++ V DEVT++ VL A + GA+ G + N
Sbjct: 84 IRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINC 143
Query: 141 FLTTAIIEMYAK 152
++ ++++ MYAK
Sbjct: 144 YIGSSLVSMYAK 155
>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 738
Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 86/183 (46%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS----SGP-----GAWILAKE 51
MISGY Q+GRF EA+ F +++ V ++ TMVVVL+A SG G+W+
Sbjct: 234 MISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNG 293
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L L+ ++ Y G +AR D +S MI GYS + EAL
Sbjct: 294 FGSNLQLT----NALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEAL 349
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEM 149
F + V ++VT + +L A + GALD GK SN L T++I+M
Sbjct: 350 ALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDM 409
Query: 150 YAK 152
YAK
Sbjct: 410 YAK 412
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS AMISGY Q+GRF EA+ F +++ V ++ TMVVVL+A + + GK
Sbjct: 226 KDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWI 285
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+ LT A+I+MY K
Sbjct: 286 GSWVRDNGFGSNLQLTNALIDMYCK 310
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
MI GYS + EAL F + V ++VT + +L A + GA L K + +D
Sbjct: 335 MIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNL 394
Query: 59 ---SSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
S+ SL +S YA G I A R+ S AM+SG++ G AL F
Sbjct: 395 RNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALF 454
Query: 106 GKLESLGV-HTDEVTMVVVLAASSGPGALDFG 136
++ + G+ D++T V VL+A + G +D G
Sbjct: 455 SEMVNKGLFRPDDITFVGVLSACTQAGLVDLG 486
>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 613
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY AG F EALE F +LE LG+ DEV +V L+A + GA L + + + D S
Sbjct: 287 MISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDS 346
Query: 61 YSLSSK-------TSRYAHSGRIRLARD-----------PVSCKAMISGYSQAGRFNEAL 102
+ YA G I A D +++SG + GR A+
Sbjct: 347 WQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAM 406
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +G+ DEVT V +L A G +D GK
Sbjct: 407 ALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGK 441
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 23/112 (20%)
Query: 64 SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA G + +AR D VS AMISGY AG F EALE F +LE LG+
Sbjct: 254 TSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGME 313
Query: 115 TDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
DEV +V L+A + GAL+ G+ N T A+++MYAK
Sbjct: 314 PDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAK 365
Score = 37.0 bits (84), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS-----GPGALD 134
RD VS +I+G +AGR ++ F ++ V DE T V +L+A S G G +
Sbjct: 144 RDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVV 203
Query: 135 FG---------KSNIFLTTAIIEMYAK 152
G N L A+++MYAK
Sbjct: 204 HGLVYRKLGCFGENELLVNALVDMYAK 230
>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 840
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 93/199 (46%), Gaps = 47/199 (23%)
Query: 1 MISGYSQAGRFNEALEPFG---KLESLGVHT------------------DEVTMVVVLTA 39
MIS YSQ G ++AL F K+ GV+ +E T VLT+
Sbjct: 315 MISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTS 374
Query: 40 SSGPGAWILAKELQ---IELDLSSYSL--SSKTSRYAHSGRIRLAR---------DPVSC 85
+ +IL +++ I+L+ + SS YA G+I AR D VSC
Sbjct: 375 CTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSC 434
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------- 137
A+ISGY+Q G EALE F +L+ G+ ++ VT VL A SG ALD GK
Sbjct: 435 TAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLR 494
Query: 138 ----SNIFLTTAIIEMYAK 152
S + L ++I+MY+K
Sbjct: 495 SEIPSFVVLQNSLIDMYSK 513
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY+Q G EALE F +L+ G+ ++ VT VLTA SG A L K++
Sbjct: 437 IISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSE 496
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S + SK +S RI R +S AM+ GYS+ G E L+ F
Sbjct: 497 IPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFT 556
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
+ E V D VT++ VL+ S G D G NIF +++ IE+ KM
Sbjct: 557 LMREETKVKPDSVTILAVLSGCSHGGLEDKGL-NIFNDMSSGKIEVEPKM 605
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG +Q G+F E+L F K++ LGV D+VT+V VL + + G L K + LD +
Sbjct: 277 MISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQ 336
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I A +D S AMI G + G+ +AL+ F
Sbjct: 337 IRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFS 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ +G+ DEVT V VL A S G ++ G+ S I+ +E Y M
Sbjct: 397 EMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCM 449
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS +MISG +Q G+F E+L F K++ LGV D+VT+V VL + + G L+ GK
Sbjct: 269 KNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWV 328
Query: 138 ----------SNIFLTTAIIEMYAK 152
++ F+ A+++MYAK
Sbjct: 329 HAYLDRNQIRADGFIGNALVDMYAK 353
>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
[Vitis vinifera]
gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
Length = 742
Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISGY Q G EAL FG++ V D + +V VL A + G I +++
Sbjct: 241 MISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMG 300
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ L S T+ YA G++ +AR + + AMISGY++ G NEA+ F
Sbjct: 301 LEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQ 360
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S + TD +T+ + A + G+LD K +++F+ TA+I+M+AK
Sbjct: 361 EMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAK 418
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GYS F +A+E + ++++ GV+ D T+ VL A SG G + + ++
Sbjct: 140 IIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLG 199
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + + YA GR+ AR + VS +MISGY Q G EAL FG
Sbjct: 200 FESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFG 259
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V D + +V VL A + L+ GKS
Sbjct: 260 QMRQRNVKPDWIALVSVLRAYTDVEDLEQGKS 291
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G NEA+ F ++ S + TD +T+ + A + G+ LAK + ++ +
Sbjct: 342 MISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTE 401
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ +A G + LAR D V AMI GY GR +A++ F
Sbjct: 402 YRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFY 461
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ GV ++VT V +L A + G ++ G
Sbjct: 462 AMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------- 137
A+I GYS F +A+E + ++++ GV+ D T+ VL A SG L+ GK
Sbjct: 138 NAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFR 197
Query: 138 ----SNIFLTTAIIEMYAK 152
S++F+ ++ +YAK
Sbjct: 198 LGFESDVFVQNGLVALYAK 216
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
+I+GY + G N+AL+ F ++ V DEVT++ VL A + GA L L +
Sbjct: 167 IIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNG 226
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y SS S YA G + AR + V +MI+G +Q+GRF EA++ F
Sbjct: 227 FEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFR 286
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+ T+ V+++ GALD G+ + + ++I+MY+K
Sbjct: 287 DMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSK 344
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 44 GAWILAKELQIELDLSSYSLSS-----KTSRYAHSGRI------RLARDPVSCKAMISGY 92
G+ A L++ L S+ L++ + Y S R+ R A D VS +I+GY
Sbjct: 112 GSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGY 171
Query: 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNI 140
+ G N+AL+ F ++ V DEVT++ VL A + GA+ G + N
Sbjct: 172 IRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINC 231
Query: 141 FLTTAIIEMYAK 152
++ ++++ MYAK
Sbjct: 232 YIGSSLVSMYAK 243
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 75.1 bits (183), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
+I GYSQ RF E L F +++ V D+VTMV V++A + G W +A +
Sbjct: 482 LIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNH 541
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
IE+D+ ++ +L++ YA G + A+
Sbjct: 542 IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFD 601
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MI YSQA F+++LE F +++ V D V + VL+A + GALD
Sbjct: 602 QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 661
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ + ++I+M+AK
Sbjct: 662 GKWIHDYVRRNNIKTDTIMENSLIDMFAK 690
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
++ G +Q+ +A+ + K + G+ D +T VL A + G + + +++
Sbjct: 381 LLRGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLG 440
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S YA G + AR D VS ++I GYSQ RF E L F
Sbjct: 441 FLLDIFVSNSLIHLYAACGDLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFE 500
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAKM 153
+++ V D+VTMV V++A + G +++L +I+ Y ++
Sbjct: 501 LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRI 559
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI YSQA F+++LE F +++ V D V + VL+A + GA WI +
Sbjct: 614 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNN 673
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S +A G ++ A +D +S ++I G + G +EAL F
Sbjct: 674 IKTDTIMENSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFY 733
Query: 107 KLESLGVHTDEVTMVVVLAASSG 129
+ + G +EVT + VL A +
Sbjct: 734 SMLTEGPRPNEVTFLGVLIACAN 756
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I GY++A + EA+ F + + G+ E+T++ V+ A S G ++ + L ++
Sbjct: 43 LIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKG 102
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ S + +S YA G ++ + R+ VS ++ISG++ G EALE F
Sbjct: 103 IMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELF 162
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ + +T + V+ A S G ++ G
Sbjct: 163 AEMRRAGIRPNRITFLSVINACSHGGLVEQG 193
Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
R+ VS +I GY++A + EA+ F + + G+ E+T++ V+ A S G + G+
Sbjct: 34 CRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGGILMGEM 93
Query: 138 -----------SNIFLTTAIIEMYAKM 153
S+ + ++I++YAK+
Sbjct: 94 LHGYCVKKGIMSDARVGNSLIDLYAKI 120
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY Q RF E L F ++++ + DE TMV +LTA + GA WI A + E
Sbjct: 323 MIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNE 382
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ ++ Y + G + A RD +S A+I G + G EAL+ F
Sbjct: 383 IKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFS 442
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + DEVT + VL A + G +D GK
Sbjct: 443 QMLKASITPDEVTCIGVLCACTHSGMVDKGK 473
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 96/207 (46%), Gaps = 57/207 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MISGY+++ +F+E+++ F ++E + V +T+V VL+A S G K+L+
Sbjct: 191 MISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLK 250
Query: 54 IE---------LDLSS--------------------YSLSSKTSRYAHSGRIRLAR---- 80
IE +D+ + S ++ + + + G++ LAR
Sbjct: 251 IEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFD 310
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMI GY Q RF E L F ++++ + DE TMV +L A + GAL+
Sbjct: 311 KMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALEL 370
Query: 136 G------------KSNIFLTTAIIEMY 150
G K + F+ A+I+MY
Sbjct: 371 GEWIKAYIDKNEIKIDSFVGNALIDMY 397
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 86/177 (48%), Gaps = 26/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI GYS+ G N A+ + ++ GV DE T +L + A +EL ++L
Sbjct: 90 MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG 149
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SS + ++ Y+ SG + +AR D V+ MISGY+++ +F+E+++ F
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD 209
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
++E + V +T+V VL+A S L+ GK L A+I+MYA
Sbjct: 210 EMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYA 266
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F + V DE TMV V++A + G+ L +++ + +D
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F K H D V+ ++ + G A++L E+ +
Sbjct: 175 LISMYVQNGRLEDAHKVFDK----SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPV-- 228
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F + V DE TM
Sbjct: 229 -------------------KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SN+ + A+I++Y+K
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I L + S AMI G++ GR + + +
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
F ++ +G+ D++T V +L+A S G LD G+ +IF T
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR-HIFRT 495
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI+GY + G + E +E F + + DEVT++ V TA + G WI A+ + +
Sbjct: 243 MIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI-AEYAEEK 301
Query: 56 LDLSSYSLSSK-TSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPF 105
L S +L++ YA G + RL +RD V+ AMISGY+Q+ R EAL F
Sbjct: 302 GMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIF 361
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V+ ++VTMV VL+A + GAL+ GK + L TA+++ YAK
Sbjct: 362 NEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAK 420
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 14/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY+Q+ R EAL F +++ V+ ++VTMV VL+A + GA W+ + + +
Sbjct: 344 MISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKD 403
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ ++ YA G I+ A R+ + A+I G + GR EALE F
Sbjct: 404 LPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFS 463
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
+ + +VT + VL A S ++ G+ +
Sbjct: 464 SMLEANIEPTDVTFIGVLLACSHGCLVEEGRRH 496
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
+I + +AG +AL F + L+ V D+ T+ + + S G + A +
Sbjct: 141 LIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKR 200
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ + L+S YA G + A + ++ AMI+GY + G + E +E F
Sbjct: 201 GFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMF 260
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + DEVT++ V A G + G+ + L TA+++MYAK
Sbjct: 261 KGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAK 319
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F ++ + DE TMV V++A + G+ L +++ +D
Sbjct: 237 MISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHG 296
Query: 61 YS-----LSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++S Y+ G + L +D +S +I GY+ + EAL F
Sbjct: 297 FGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 357 EMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAK 416
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
S ++ +S YA G I L + S AMI G++ GR + A +
Sbjct: 398 KSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDI 457
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
F ++ +G+ D++T V +L+A S G LD G+ +IF T
Sbjct: 458 FSRMRKIGIEPDDITFVGLLSACSRSGMLDLGR-HIFRT 495
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F + H D V+ ++ + G A++L E+ +
Sbjct: 175 LISVYVQNGRLEDARKVFDR----SPHRDVVSYTALIKGYASRGYIESAQKLFDEIPV-- 228
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F ++ + DE TM
Sbjct: 229 -------------------KDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTM 269
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SN+ + +++++Y+K
Sbjct: 270 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSK 313
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 91/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
+I+ Y + G + E +E F + +GV DE+T+V V+TA + G W+ +
Sbjct: 191 IITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKG 250
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + +++ YA G + RL +RD V+ AMISGY+QA + EAL F
Sbjct: 251 LVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFS 310
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V ++VTMV VL+A + GAL+ GK I L TA+++ YAK
Sbjct: 311 EMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAK 368
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY+QA + EAL F +++ V ++VTMV VL+A + GA W+ + +
Sbjct: 292 MISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKR 351
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ ++ YA G I A ++ + A+I G + GR EALE F
Sbjct: 352 LSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
+ + +VT + VL A S ++ G+ +
Sbjct: 412 SMRKASIEPTDVTFIGVLMACSHSCLVEEGRRH 444
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 12/79 (15%)
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------- 137
A+I+ Y + G + E +E F + +GV DE+T+V V+ A G GK
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDE 248
Query: 138 ----SNIFLTTAIIEMYAK 152
N L TA+I+MYAK
Sbjct: 249 KGLVRNRNLMTALIDMYAK 267
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G +EAL F ++ +E T VLT+ L K++ ++ +
Sbjct: 123 MISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWN 182
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +G+I AR D VSC A+I+GY+Q G EALE F
Sbjct: 183 YDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQ 242
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L+S G+ + VT +L A SG LD GK L ++I+MY+K
Sbjct: 243 RLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 300
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY+Q G EALE F +L+S G+ + VT +LTA SG K+ L+ E
Sbjct: 224 IIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE 283
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y+ G + A R +S AM+ GYS+ G E LE F
Sbjct: 284 LPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFR 343
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ + V D VT++ VL+ S D G S
Sbjct: 344 LMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLS 376
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS AMIS YSQ G +EAL F ++ +E T VL + L GK
Sbjct: 115 KNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQI 174
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 175 HGLIVKWNYDSHIFVGSSLLDMYAK 199
>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
Length = 446
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+ISGY+Q G EALE FGK+++ G DEVT+ VL+A S G K++ ++
Sbjct: 163 LISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKG 222
Query: 58 --LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + L+ YA G + AR + +MISG++ G+ EALE FG
Sbjct: 223 IKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFG 282
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E DE+T + VL+A + G ++ G
Sbjct: 283 RMEDSHEGPDEITFLSVLSACAHGGFVNAG 312
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
++ SS S Y G ++ AR + V+ ++ISGY+Q G EALE FGK+++
Sbjct: 127 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE 186
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G DEVT+ VL+A S G LD GK N F+ +++MYAK
Sbjct: 187 GFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAK 239
>gi|125562361|gb|EAZ07809.1| hypothetical protein OsI_30067 [Oryza sativa Indica Group]
Length = 642
Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
+I+GY + G N+AL+ F ++ V DEVT++ VL A + GA L L +
Sbjct: 79 IIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNG 138
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y SS S YA G + AR + V +MI+G +Q+GRF EA++ F
Sbjct: 139 FEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFR 198
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+ T+ V+++ GALD G+ + + ++I+MY+K
Sbjct: 199 DMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSK 256
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 23/132 (17%)
Query: 44 GAWILAKELQIELDLSSYSLSS-----KTSRYAHSGRI------RLARDPVSCKAMISGY 92
G+ A L++ L S+ L++ + Y S R+ R A D VS +I+GY
Sbjct: 24 GSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGY 83
Query: 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNI 140
+ G N+AL+ F ++ V DEVT++ VL A + GA+ G + N
Sbjct: 84 IRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINC 143
Query: 141 FLTTAIIEMYAK 152
++ ++++ MYAK
Sbjct: 144 YIGSSLVSMYAK 155
>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
pumila]
Length = 710
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
ISGY++ G + EALE F K+ V DE TMV VL+A + G+ L +++ ++ +
Sbjct: 207 ISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF 266
Query: 62 SLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 267 GXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQD 326
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
+ G ++VTM+ +L+A + GA+D G+ +++ L T++I+MYAK
Sbjct: 327 MLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 385
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F + G ++VTM+ +L+A + GA + + + + +D
Sbjct: 307 LIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRL 366
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I L R S AMI G++ GR N A +
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDI 426
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR-HIF 462
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A K+ H D V+ ++T + G A ++ E+ +
Sbjct: 144 LISMYVQNGRLEDA----QKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPV-- 197
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS A ISGY++ G + EALE F K+ V DE TM
Sbjct: 198 -------------------KDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTM 238
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V VL+A + G+++ G+ N+ + A+I++Y+K
Sbjct: 239 VTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSK 282
>gi|255540955|ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550657|gb|EEF52144.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 434
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+ G NE L+ F ++++ + +E+T+V +L+ + G + ++ ++ ++
Sbjct: 199 MISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRIKKYIEDNN 258
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ S Y G + AR D V+ AMI+GY+Q GR NEALE F
Sbjct: 259 LCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFE 318
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ V ++VT+V VL+A G+++ G SN+++ +A++ MY+K
Sbjct: 319 CMRREKVKPNDVTLVSVLSACVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSK 376
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AMIS Y+ G NE L+ F ++++ + +E+T+V +L+ + G L+ G
Sbjct: 191 RTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAKLGDLEMGLRI 250
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ ++TAI+EMY K
Sbjct: 251 KKYIEDNNLCVNMIVSTAILEMYVK 275
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q GR NEALE F + V ++VT+V VL+A + L S
Sbjct: 300 MIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSAC---------------VQLGS 344
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + Y S LA + A++ YS+ G ++A E FGK
Sbjct: 345 VEMGNYIGSYVESQD--LASNVYVASALVGMYSKCGNISKAREVFGK 389
>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 666
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G EAL F ++ + T +LT+ G + +++ I+ +
Sbjct: 162 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 221
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA SGRI A RD V+C A+ISGY+Q G EAL+ F
Sbjct: 222 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 281
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G++++ VT VL A SG AL+ GK S + L ++I+MY+K
Sbjct: 282 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSK 339
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-LDLS 59
+ISGY+Q G EAL+ F +L+ G++++ VT VLTA SG A K++ L
Sbjct: 263 IISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSG 322
Query: 60 SYS----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
YS L+S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 323 QYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFK 382
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E V D +T + VL+ S D G
Sbjct: 383 LMREENKVKPDSITYLAVLSGCSHGQLEDMG 413
Score = 35.8 bits (81), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS AMIS YSQ G EAL F ++ + T +L + G + G+
Sbjct: 154 KNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 213
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 214 HSIAIKRNYESHMFVGSSLLDMYAK 238
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 31/180 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I YS+ G +EA+ F ++ D +T+VVVL+A S G + L K++ +D
Sbjct: 210 LIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVVVLSACSQLGDFTLGKKILAYMDHHL 266
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ + S Y G+ LAR + VS +MISG + G F EAL
Sbjct: 267 FDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHM 326
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
F +++++G+ D VT+V VL + + G L+ G K++ ++ A+++MYAK
Sbjct: 327 FRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAK 386
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG + G F EAL F +++++G+ D VT+V VL + + G L K + +D +
Sbjct: 310 MISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNH 369
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ YA G I A +D S AMI G++ G+ + AL F
Sbjct: 370 MKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFS 429
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ +GV D VT+V VL+A S G L+ G+ +
Sbjct: 430 EMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHF 463
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDLSSYSLSSKT 67
F + ++ +G+ D T+ +L A S A+I A ++ I+ LSS T
Sbjct: 119 FTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNT 178
Query: 68 --SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA SG I D +S +I YS+ G +EA+ F ++ D
Sbjct: 179 LMRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---D 235
Query: 117 EVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
+T+VVVL+A S G GK S++FL A+++MY K
Sbjct: 236 RMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLK 285
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 42/194 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + G EAL + +++ G+ DEVTM+ V+++ + L +E ++ +
Sbjct: 151 MINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENG 210
Query: 61 YSLSSKTSR-----YAHSGRIRLAR-------------------------DPVSCKAMIS 90
L+ + Y G + AR D V AMI
Sbjct: 211 LKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIG 270
Query: 91 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KS 138
GY A R EAL F +++++ ++ DEVTMV L+A S GALD G
Sbjct: 271 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 330
Query: 139 NIFLTTAIIEMYAK 152
N+ L TA+I+MYAK
Sbjct: 331 NVALGTALIDMYAK 344
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY A R EAL F +++++ ++ DEVTMV L+A S GA WI + E
Sbjct: 268 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 327
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ ++ YA G+I A R+ ++ A+ISG + G + A+ F
Sbjct: 328 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 387
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V DEVT + +L+A G ++ G+
Sbjct: 388 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 418
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
RD VS +MI+GY + G EAL + +++ G+ DEVTM+ V+++ + LD G+ +
Sbjct: 143 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 202
Query: 140 ------------IFLTTAIIEMYAK 152
+ L A+++MY K
Sbjct: 203 HCYIEENGLKLTVPLANALMDMYMK 227
>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
[Vitis vinifera]
Length = 575
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+ISGY+Q G EALE FGK+++ G DEVT+ VL+A S G K++ ++
Sbjct: 292 LISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKG 351
Query: 58 --LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + L+ YA G + AR + +MISG++ G+ EALE FG
Sbjct: 352 IKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFG 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E DE+T + VL+A + G ++ G
Sbjct: 412 RMEDSHEGPDEITFLSVLSACAHGGFVNAG 441
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 59/113 (52%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
++ SS S Y G ++ AR + V+ ++ISGY+Q G EALE FGK+++
Sbjct: 256 FAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAE 315
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G DEVT+ VL+A S G LD GK N F+ +++MYAK
Sbjct: 316 GFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAK 368
>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Cucumis sativus]
Length = 638
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G EAL F ++ + T +LT+ G + +++ I+ +
Sbjct: 134 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 193
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA SGRI A RD V+C A+ISGY+Q G EAL+ F
Sbjct: 194 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 253
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G++++ VT VL A SG AL+ GK S + L ++I+MY+K
Sbjct: 254 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSK 311
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-LDLS 59
+ISGY+Q G EAL+ F +L+ G++++ VT VLTA SG A K++ L
Sbjct: 235 IISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSG 294
Query: 60 SYS----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
YS L+S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 295 QYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFK 354
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E V D +T + VL+ S D G
Sbjct: 355 LMREENKVKPDSITYLAVLSGCSHGQLEDMG 385
Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AMIS YSQ G EAL F ++ + T +L + G + G+
Sbjct: 126 RNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQI 185
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +++++MYAK
Sbjct: 186 HSIAIKRNYESHMFVGSSLLDMYAK 210
>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
Length = 677
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
M++G+ AGR EAL + ++ GV DEV MV V+ T ++ GA + + L+
Sbjct: 179 MVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHC 238
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S S YA +G + +A R+ V+ A+ISG++Q GR EAL+ F
Sbjct: 239 MRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFR 298
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+L++ G+ +V L A + G L GKS L TA+++MY+K
Sbjct: 299 ELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEWQCILGTAVLDMYSK 355
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S +S+AG AL F L S + T + LTA + G A+ +++ +
Sbjct: 79 LLSAHSRAGAPGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAG 137
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ Y+ G + A +D V+ M++G+ AGR EAL +
Sbjct: 138 YGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYS 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ GV DEV MV V+ A G G S ++ TT+++ MYAK
Sbjct: 198 RMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAK 255
>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+++ +F+E+++ F ++E + V +T+V VL+A S L
Sbjct: 191 MISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACS---------------KLKD 235
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
++ + R RD VS AMI GY Q RF E L F ++++ + DE TM
Sbjct: 236 LNVGKRVHRNYFDKMPE--RDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTM 293
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMY 150
V +L A + GAL+ G K + F+ A+I+MY
Sbjct: 294 VSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMY 335
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI GYS+ G N A+ + ++ GV DE T +L + A +EL ++L
Sbjct: 90 MIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLG 149
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SS + ++ Y+ SG + +AR D V+ MISGY+++ +F+E+++ F
Sbjct: 150 FSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD 209
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + V +T+V VL+A S L+ GK
Sbjct: 210 EMERMRVLPSSITLVSVLSACSKLKDLNVGK 240
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY Q RF E L F ++++ + DE TMV +LTA + GA WI A + E
Sbjct: 261 MIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKNE 320
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ ++ Y + G + A RD +S A+I G + G EAL+ F
Sbjct: 321 IKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFS 380
Query: 107 KLESLGVHTDEV 118
++ + DEV
Sbjct: 381 QMLKASITPDEV 392
>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 999
Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q +F EAL F +++ G+ +D + ++A +G A +++ + LS
Sbjct: 510 MIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSG 569
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ S YA G++R A+D VS +++SG++Q+G F EAL F
Sbjct: 570 YSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFA 629
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ + T ++A++ + GK S ++ A+I +YAK
Sbjct: 630 QMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAK 687
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 74/143 (51%), Gaps = 9/143 (6%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG++Q+G F EAL F ++ G+ + T ++A++ + K++ + +
Sbjct: 611 LVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTG 670
Query: 61 YSLSSKTSR-----YAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
Y ++ S YA G I D +S +MI+GYSQ G EAL+ F ++ L V
Sbjct: 671 YDSETEVSNALITLYAKCGTI----DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLP 726
Query: 116 DEVTMVVVLAASSGPGALDFGKS 138
+ VT V VL+A S G +D G S
Sbjct: 727 NHVTFVGVLSACSHVGLVDEGIS 749
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLS 59
Y Q N++ + F +++ G+ ++ T +L + GA L +++ ++ +
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFN 472
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
Y S YA G++ A D VS AMI+GY+Q +F EAL F +++
Sbjct: 473 VYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQD 532
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G+ +D + ++A +G ALD G+ ++ + A++ +YA+
Sbjct: 533 QGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYAR 586
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 40/178 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG SQ G EA+ F + +VL+A + + K+L ++
Sbjct: 236 MISGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFEFGKQLHGLVLKQG 281
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SS Y ++ + Y+ SG + A RD VS ++ISG +Q G N AL F
Sbjct: 282 FSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFK 341
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ D VT+ +L+A + GAL GK S+I + +++++Y K
Sbjct: 342 KMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVK 399
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 94/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI GY Q+G FN+AL F ++++ V DE+ + VL+A G +I+
Sbjct: 194 MIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENN 253
Query: 52 LQIE----------------LDLSSYSLSSKTSR-----------YAHSGRIRLAR---- 80
+ ++ +DL+ T + Y+ G+I AR
Sbjct: 254 IVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFN 313
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD- 134
D V AMISGY+++ EAL F +++SLG+ D+VTM+ V+ A + GALD
Sbjct: 314 QMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQ 373
Query: 135 ------FGKSNIF-----LTTAIIEMYAK 152
F N F + A+IEMYAK
Sbjct: 374 AKWIHLFVDKNGFGGALPINNALIEMYAK 402
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+++ EAL F +++SLG+ D+VTM+ V+TA + GA AK + + +D +
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + AR + +S MIS ++ G AL F
Sbjct: 386 FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFH 445
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + + +T V VL A S G ++ G+
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGR 476
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 21/103 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA GRI AR D V+ MI GY Q+G FN+AL F ++++ V DE+ +
Sbjct: 167 YAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMML 226
Query: 121 VVVLAASSGPGALDFGK--------SNI----FLTTAIIEMYA 151
VL+A G L +GK +NI L +A++ MYA
Sbjct: 227 STVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYA 269
>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
Length = 624
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 34/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEV-----TMVVVLTASSGPGAWILAKELQIE 55
MI+GY + G F E L F ++ V DEV TMV +L+A S + + + L +
Sbjct: 197 MINGYGKEGDFVEMLSLFRQML---VSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVF 253
Query: 56 LDLSSYSLSS-----KTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEA 101
+D++ L++ Y+ G + A D VSCK A+I+G Q G EA
Sbjct: 254 IDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEA 313
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
++ + +++ V +E+T+V VL+A +G GAL+ G+ N+ L TA+++M
Sbjct: 314 IDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNGLDLNVILATALVDM 373
Query: 150 YAK 152
YAK
Sbjct: 374 YAK 376
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+G Q G EA++ + +++ V +E+T+V VL+A +G GA L +E+ + L
Sbjct: 300 IITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYLGRNG 359
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
DL+ ++ YA G+I A +D AMI G + G ++L F
Sbjct: 360 LDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFS 419
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV ++VT + VL+A + G ++ G+
Sbjct: 420 QMVRAGVQPNDVTFIGVLSACNHSGLVEEGR 450
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 30/118 (25%)
Query: 62 SLSSKTSRYAHSGRIRLARD----------PVSCKAMISGYSQAGRFNEALEPFGKLESL 111
S +S S Y G++ ARD V AMI+GY + G F E L F ++
Sbjct: 161 SWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQML-- 218
Query: 112 GVHTDEV-----TMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V DEV TMV +L+A S + G+ N L TA+I+MY+K
Sbjct: 219 -VSADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSK 275
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
M+SGYS+ G NEAL F +++++GV DEVTMV V++A + GA W+ A K
Sbjct: 199 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 258
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I AR D + AMI G++ G +AL
Sbjct: 259 ITVDLELS----TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDAL 314
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ L V + VT + VL+A + G ++ G+
Sbjct: 315 GLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 349
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 22/135 (16%)
Query: 40 SSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMI 89
+ G G + A+ L+ L S+Y + + YA ++ LAR + V+ AM+
Sbjct: 141 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 200
Query: 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------ 137
SGYS+ G NEAL F +++++GV DEVTMV V++A + GALD GK
Sbjct: 201 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 260
Query: 138 SNIFLTTAIIEMYAK 152
++ L+TA+I+MYAK
Sbjct: 261 VDLELSTALIDMYAK 275
>gi|255542942|ref|XP_002512534.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548495|gb|EEF49986.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 444
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 92/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
+ISGY Q GR+ EAL FGK+ + G+ DEV +V VL+A +G LA ++
Sbjct: 130 LISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLVHSLAVKIG 189
Query: 54 IE-----------------------------LDLSSYSLSSKTSRYAHSGRIRLAR---- 80
IE L S +S S Y G I A+
Sbjct: 190 IESYVNLQNALIHMYSSCREIDSAQKLFNVGYSLDQISWNSMISGYLKCGEIEKAKALFD 249
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMISGY+Q RF E L F +++ GV DE T+V V++A + ALD
Sbjct: 250 IMNDKDLVSWSAMISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQ 309
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GK N+ L T +I+MY K
Sbjct: 310 GKWIHLYLRKNGLKINVILGTTLIDMYMK 338
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY+Q RF E L F +++ GV DE T+V V++A + G WI +
Sbjct: 262 MISGYAQHDRFAETLALFQEMQLDGVKPDETTLVSVVSACTHLAALDQGKWIHLYLRKNG 321
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
L ++ ++ Y G + A + + A+I G + G + +L+ F
Sbjct: 322 LKINVILGTTLIDMYMKFGCVEDALEVFHGMKEKGVSTWNAVILGLALNGLVHMSLDTFS 381
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
+++ GV +E+T V VL A G ++ G+ +
Sbjct: 382 EMKDCGVVPNEITFVAVLVACRHMGLVEEGRCHF 415
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS A+ISGY Q GR+ EAL FGK+ + G+ DEV +V VL+A + A+ GK
Sbjct: 122 KDLVSWSALISGYEQNGRYEEALVTFGKMNAYGIMVDEVVVVSVLSACAHLFAVKTGKLV 181
Query: 138 ----------SNIFLTTAIIEMYA 151
S + L A+I MY+
Sbjct: 182 HSLAVKIGIESYVNLQNALIHMYS 205
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 80/151 (52%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY Q R ++ALE F ++++ V +EVT+V VL A + GA WI L+ +
Sbjct: 290 MIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKK 349
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD S+ ++ YA G I A R+ S A+I+G++ G EALE F
Sbjct: 350 LDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFA 409
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G +EVTM+ VL+A + G ++ G+
Sbjct: 410 RMIEEGFGPNEVTMIGVLSACNHCGLVEEGR 440
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+I GY++ G +EA F ++E D V ++ G LA+EL E+ + +
Sbjct: 197 VIVGYARCGDMSEARRLFDEMED----RDIVAFNAMIDGYVKMGCVGLARELFNEMRERN 252
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S S Y +G + A+ + + AMI GY Q R ++ALE F ++++
Sbjct: 253 VVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRRSHDALELFREMQT 312
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V +EVT+V VL A + GALD G+ + + TA+I+MYAK
Sbjct: 313 ASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTALIDMYAK 366
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F ++ + V DE T V VL+A + G+ L +++ +D
Sbjct: 167 MISGYAETGCYKEALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHG 226
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 227 FDSNLKIVNALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ 286
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ VL A + GA+D G+ +++ L T++I+MYAK
Sbjct: 287 EMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 346
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 88/183 (48%), Gaps = 40/183 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG------VHTDEVTMVVVLTASSGPGAWILAKELQI 54
++ +++ F E + G++ LG VHT ++M V W L ++
Sbjct: 70 LLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYV--------QNWRLEDAYKV 121
Query: 55 ELDLSSY----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
D SS+ S ++ + YA G IR A +D VS AMISGY++ G + EA
Sbjct: 122 -FDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
LE F ++ + V DE T V VL+A + G+++ G+ SN+ + A+I++
Sbjct: 181 LELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDL 240
Query: 150 YAK 152
Y+K
Sbjct: 241 YSK 243
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ VL A + GA + + + + +D
Sbjct: 268 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 327
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I L + S AMI G++ GR + + +
Sbjct: 328 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDL 387
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ +G+ D++T V +L+A S G LD G+ +IF
Sbjct: 388 FSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR-HIF 423
Score = 42.4 bits (98), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ GR + + + F ++ +G+ D++T V +L+A S G LDL
Sbjct: 371 MIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGM----------LDLGR 420
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ S T Y + ++ + C MI +G F EA E +E + D V
Sbjct: 421 HIFRSMTQDYKMTPKL----EHYGC--MIDLLGHSGLFKEAEEMINTME---MEPDGVIW 471
Query: 121 VVVLAASSGPGALDFGKS 138
+L A G ++ +S
Sbjct: 472 CSLLKACKMHGNVELAES 489
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 73.2 bits (178), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
M+SGYS+ G NEAL F +++++GV DEVTMV V++A + GA W+ A K
Sbjct: 248 MVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKG 307
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I AR D + AMI G++ G +AL
Sbjct: 308 ITVDLELS----TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDAL 363
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ L V + VT + VL+A + G ++ G+
Sbjct: 364 GLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGR 398
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 75/135 (55%), Gaps = 22/135 (16%)
Query: 40 SSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMI 89
+ G G + A+ L+ L S+Y + + YA ++ LAR + V+ AM+
Sbjct: 190 APGEGRQLHAQALRQGLATSAYVQTGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMV 249
Query: 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------ 137
SGYS+ G NEAL F +++++GV DEVTMV V++A + GALD GK
Sbjct: 250 SGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT 309
Query: 138 SNIFLTTAIIEMYAK 152
++ L+TA+I+MYAK
Sbjct: 310 VDLELSTALIDMYAK 324
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
MI GYS+ G NEAL F ++++GV+ DEVTMV V++A + GA W+ A K
Sbjct: 200 MIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKG 259
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I A RD + AMI G + G +AL
Sbjct: 260 ITVDLELS----TALIDMYAKCGLIERAKSVFDSMVERDTKAWSAMIVGLAMHGLAEDAL 315
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ L V + VT V VL+A + G +D G+
Sbjct: 316 GLFSRMLQLKVRPNNVTFVGVLSACAHSGLVDDGR 350
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 29 DEVTMVVVLTASS--GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDP---- 82
+ T+ VL A + G G + A+ L+ S Y + + YA + LAR+
Sbjct: 129 NSFTLAFVLKACTALGEGQQLHAQAFGHGLEPSPYVQTGLLNLYARCEEVALARNVFDGM 188
Query: 83 ------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
V+ +MI GYS+ G NEAL F ++++GV+ DEVTMV V++A + GALD G
Sbjct: 189 VEDKNLVAWSSMIGGYSRMGMVNEALGLFRDMQAVGVNPDEVTMVSVISACAKAGALDLG 248
Query: 137 K------------SNIFLTTAIIEMYAK 152
K ++ L+TA+I+MYAK
Sbjct: 249 KWVHAFIDRKGITVDLELSTALIDMYAK 276
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F + V DE TMV V++A + G+ L +++ +D
Sbjct: 194 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHG 253
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 254 FGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 313
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 314 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAK 373
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F + H D V+ ++ + G A+++ E+ +
Sbjct: 132 LISMYVQNGRLEDAHKVFDE----SPHRDVVSYTALIKGYASRGYIENAQKMFDEIPV-- 185
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F + V DE TM
Sbjct: 186 -------------------KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 226
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SN+ + A+I++Y+K
Sbjct: 227 VTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 270
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 295 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 354
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I L + S AMI G++ GR + + +
Sbjct: 355 KGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDI 414
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 415 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR-HIF 450
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+G ++ +F +A F +E GV D+V V +L A + P G + A+ ++
Sbjct: 277 MITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVG 336
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD Y ++ S Y G + A R+ VS AMI+G++Q GR EA F
Sbjct: 337 LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G+ + VT + +L A S P AL G+ ++ + TA++ MYAK
Sbjct: 397 KMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAK 454
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+G+ Q G A + F ++ GV D++T +L A + P A + L +
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAA 639
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + S Y G I A ++ S +MI+GY+Q GR EALE F
Sbjct: 640 LDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFC 699
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV D +T V L+A + G + G
Sbjct: 700 QMQQEGVKPDWITFVGALSACAHAGLIKEG 729
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 76/180 (42%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+ Y Q +++ A+ F L G+ D T +L P A L K +Q
Sbjct: 479 MITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAG 538
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E DL + ++ S + + G + A RD VS +I+G+ Q G A +
Sbjct: 539 FESDL--HIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDY 596
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ GV D++T +L A + P AL G+ ++ + T +I MY K
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTK 656
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
++ GY Q R+ EA ++ GV D+ T V +L A + G + + L
Sbjct: 176 LLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAG 235
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D + ++ + + G + A RD ++ +MI+G ++ +F +A F
Sbjct: 236 WDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQ 295
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+E GV D+V V +L A + P AL+ GK + I++ TA++ MY K
Sbjct: 296 VMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTK 353
>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 734
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M++GY+Q G ++AL+ F K+ S GV E T+V V+ A S A + K++ ++
Sbjct: 291 MVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLG 350
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
L Y LS+ YA G + AR C ++I+GY Q G + L +G
Sbjct: 351 FGLQLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYG 410
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ V +E+TM VL A S ALD GK
Sbjct: 411 KMQMERVIPNELTMASVLRACSSLAALDQGK 441
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q G + L +GK++ V +E+TM VL A S A K++ +
Sbjct: 392 IITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQGKQMHARIIKYG 451
Query: 61 YSL-----SSKTSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S+ ++ Y G + R+ +RD +S AMISG SQ G N+ALE F
Sbjct: 452 FKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFE 511
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
K+ G+ D VT V +L+A S G +D G + F ++E YA M
Sbjct: 512 KMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACM 564
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 42/186 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+ + ++A+E F + +E + VL+A L ++ +
Sbjct: 190 MISGYASSDIADKAVEVFELMRREEEIQNEFALTSVLSA--------LTSDVFVYTGRQV 241
Query: 61 YSLSSKT-------------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
+SL+ K + YA G + A ++ ++ AM++GY+Q G
Sbjct: 242 HSLAIKNGLLAIVSVANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDS 301
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAI 146
++AL+ F K+ S GV E T+V V+ A S A+ GK +++ +A+
Sbjct: 302 DKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAV 361
Query: 147 IEMYAK 152
++MYAK
Sbjct: 362 VDMYAK 367
>gi|255552151|ref|XP_002517120.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543755|gb|EEF45283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 477
Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 63/212 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------------------- 41
MI+GY Q G F++AL+ F ++ S V D++ + +++A +
Sbjct: 196 MINGYYQGGHFDDALQLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGKEVHDLIIENN 255
Query: 42 ----------------GPGAWILAKELQIELDLSSYSL---SSKTSRYAHSGRIRLAR-- 80
G G +AKEL ++SS +L ++ S Y GRI AR
Sbjct: 256 FALDPHLESGLISLYAGCGCMDMAKELFT--NMSSRNLVVSTTMVSGYLKVGRIEDARLI 313
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
D + MISGY+++ + EAL F +++ LG+ DEVTM+ V++A + G L
Sbjct: 314 FNQMDEKDLICWSIMISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVL 373
Query: 134 D-------------FGKSNIFLTTAIIEMYAK 152
D FGK+ + + A+I+MYAK
Sbjct: 374 DQAKRIHMFVDKNGFGKA-LSVNNALIDMYAK 404
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 14/133 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+++ + EAL F +++ LG+ DEVTM+ V++A + G AK + + +D +
Sbjct: 328 MISGYAESDQPQEALHLFNEMQFLGIEPDEVTMLSVISACAHLGVLDQAKRIHMFVDKNG 387
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +LS + YA G + A R+ +S +MI+ ++ G N AL F
Sbjct: 388 FGKALSVNNALIDMYAKCGCLEAARAVFEKMQIRNVISWTSMINAFAIHGDANSALNYFH 447
Query: 107 KLESLGVHTDEVT 119
+++ V + VT
Sbjct: 448 QMKEENVEPNAVT 460
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
RD V+ MI+GY Q G F++AL+ F ++ S V D++ + +++A + L +GK
Sbjct: 188 RDVVTWSTMINGYYQGGHFDDALQLFEEMRSSNVEPDKMVLSTIISACARAKNLGYGK 245
>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 24/167 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I GYSQ G EAL+ FGK+++ G DEVT+V VL+A + + K++
Sbjct: 155 LICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKG 214
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
+ L+ + +++ YA G + R+ +C +MISG++ G+ EALE FG
Sbjct: 215 MKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFG 274
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++E DE+T + VL+A G ++ G +E+++KM
Sbjct: 275 RMEESNEKPDEITFLSVLSACVHGGFVEVG----------LEIFSKM 311
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 38/181 (20%)
Query: 1 MISGYSQAGR-------FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ 53
MI G++++G FNE PF +L+++ VT V++ + G A+ L
Sbjct: 60 MIDGFARSGDMVAARRTFNEV--PF-ELKNV------VTWTVMIDGYASKGEMEAARLLF 110
Query: 54 IELDLSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
++ ++ + SS S Y G ++ AR + V+ ++I GYSQ G EAL+
Sbjct: 111 EDMPQRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALD 170
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
FGK+++ G DEVT+V VL+A + LD GK N F+ A+++MYA
Sbjct: 171 AFGKMQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYA 230
Query: 152 K 152
K
Sbjct: 231 K 231
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG++ G+ EALE FG++E DE+T + VL+A G + L+I +
Sbjct: 256 MISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGG--FVEVGLEIFSKMER 313
Query: 61 YSLSSKTSRY-------AHSGRIRLA 79
Y LS+ Y +GRI+ A
Sbjct: 314 YGLSASIKHYGCLVDLLGRAGRIQDA 339
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE--------- 51
MI+GY + G EAL + +++ G+ DEVTM+ V+++ + L +E
Sbjct: 179 MINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENG 238
Query: 52 LQIELDLSSY-------------------SLSSKTSR--------YAHSGRIRLA----- 79
L++ + L++ S+++KT YA SG + +A
Sbjct: 239 LKLTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFD 298
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+D V AMI GY A R EAL F +++++ ++ DEVTMV L+A S GALD
Sbjct: 299 EMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDV 358
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G N+ L TA+I+MYAK
Sbjct: 359 GIWIHHYIEKHELSLNVALGTALIDMYAK 387
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY A R EAL F +++++ ++ DEVTMV L+A S GA WI + E
Sbjct: 311 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 370
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ ++ YA G+I A R+ ++ A+ISG + G + A+ F
Sbjct: 371 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V DEVT + +L+A G ++ G+
Sbjct: 431 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 461
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
RD VS +MI+GY + G EAL + +++ G+ DEVTM+ V+++ + LD G+ +
Sbjct: 171 RDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRES 230
Query: 140 ------------IFLTTAIIEMYAK 152
+ L A+++MY K
Sbjct: 231 HCYIEENGLKLTVPLANALMDMYMK 255
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G +EAL F ++ +E T VLT+ L K++ ++ +
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWN 183
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +G+I+ AR D VSC A+I+GY+Q G EALE F
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIEMYAK 152
+L S G+ + VT +L A SG LD GK L ++I+MY+K
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY+Q G EALE F +L S G+ + VT +LTA SG K+ L+ E
Sbjct: 225 IIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE 284
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 285 LPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFR 344
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ + V D VT++ VL+ S D G NIF
Sbjct: 345 LMRDEKRVKPDAVTLLAVLSGCSHGRMEDTG-LNIF 379
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS AMIS YSQ G +EAL F ++ +E T VL + L GK
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAK 200
>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 681
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + GA + L+
Sbjct: 180 MVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S YA +G + +A R+ VS AMISG++Q G+ +EAL F
Sbjct: 240 MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFR 299
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G+ D +V L A S G L G+S N L TA I+MY+K
Sbjct: 300 NMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSK 356
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD V+ M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + + G S
Sbjct: 172 RDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASV 231
Query: 139 -----------NIFLTTAIIEMYAK 152
++ T++++MYAK
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAK 256
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------I 54
+I +++AG ++ A+E F ++ L + D T+VVVL+A S G L +++ I
Sbjct: 183 LIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYI 242
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
++ + ++ Y + A ++ V+ AMISG + GR+ EAL+ F
Sbjct: 243 DMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTF 302
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV DEVT+V VL + + G L+ GK ++ F+ A+++MYAK
Sbjct: 303 RMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAK 361
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 73/155 (47%), Gaps = 14/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISG + GR+ EAL+ F ++ GV DEVT+V VL + + G W+ A +
Sbjct: 285 MISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNH 344
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G I A RD S AMI G + G N A + F
Sbjct: 345 ILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFS 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
++ +G+ +EVT + +L A S G + GK F
Sbjct: 405 EMFRVGIEPNEVTFLGLLMACSHGGLVAEGKKYFF 439
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +I +++AG ++ A+E F ++ L + D T+VVVL+A S G L+ G
Sbjct: 175 RDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKV 234
Query: 137 ----------KSNIFLTTAIIEMYAK 152
K+++F+ A+++MY K
Sbjct: 235 HSYIRHYIDMKADVFVGNALLDMYLK 260
>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
Length = 681
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + GA + L+
Sbjct: 180 MVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S YA +G + +A R+ VS AMISG++Q G+ +EAL F
Sbjct: 240 MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFR 299
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G+ D +V L A S G L G+S N L TA I+MY+K
Sbjct: 300 NMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSK 356
Score = 42.0 bits (97), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD V+ M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + + G S
Sbjct: 172 RDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASV 231
Query: 139 -----------NIFLTTAIIEMYAK 152
++ T++++MYAK
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAK 256
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY G+F EA++ F +L + + D T+V VL+A + G WI +++
Sbjct: 184 IISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMG 243
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S YA G + AR D VS AMI GY+ G EA++ F
Sbjct: 244 MVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFL 303
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ V D T+V VL+A + GAL+ G+ N L TA+I++YAK
Sbjct: 304 QMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAK 361
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI G F++A+E +G + S G + T VL A A +L +L +++
Sbjct: 83 MIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC----ARLLDLQLGVKIHTLV 138
Query: 57 -----DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
D + +S YA G + A ++ VS A+ISGY G+F EA+
Sbjct: 139 VKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAI 198
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
+ F +L + + D T+V VL+A + G L+ G+ N+F+ T++++MY
Sbjct: 199 DMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMY 258
Query: 151 AK 152
AK
Sbjct: 259 AK 260
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G EA++ F +++ V D T+V VL+A + GA L + + +D +
Sbjct: 285 MIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNE 344
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + A +D V A+ISG + G + FG
Sbjct: 345 FLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFG 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
++E LG+ D T + +L + G +D G+ F T IE Y M
Sbjct: 405 QVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCM 457
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ Y + G + E +E F + +GV DEVT+V V+TA G L K + +D
Sbjct: 192 IVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEG 251
Query: 61 YSLSSK-----TSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K YA G I RL +RD V+ AMISGY+QA + EAL F
Sbjct: 252 LARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFS 311
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V ++VTMV VL+A + GAL+ GK L TA+++ YAK
Sbjct: 312 EMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAK 369
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY+QA + EAL F +++ V ++VTMV VL+A + GA W+ + +
Sbjct: 293 MISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKR 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L++ ++ YA G I A ++ + A+I G + GR EALE F
Sbjct: 353 LSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFS 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
+ G+ +VT + VL A S ++ G+ +
Sbjct: 413 SMREAGIEPTDVTFIGVLMACSHSCLVEEGRRH 445
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+ LSS YA G + AR V A+++ Y + G + E +E F + +
Sbjct: 156 FVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEV 215
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
GV DEVT+V V+ A G GK N L TA+++MYAK
Sbjct: 216 GVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAK 268
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
+I GYSQ R E L F +++ V D+VTMV V++A + G W +A +
Sbjct: 1012 LIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNH 1071
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
IE+D+ ++ +L++ + YA G + A+
Sbjct: 1072 IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFD 1131
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MI YSQA F+++LE F +++ V D V + VL+A + GALD
Sbjct: 1132 QIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDL 1191
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ + ++I+M+AK
Sbjct: 1192 GKWIHDYVRRNNIKADTIMENSLIDMFAK 1220
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI YSQA F+++LE F +++ V D V + VL+A + GA WI +
Sbjct: 1144 MICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNN 1203
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S +A G ++ A +D +S ++I G + G +EAL+ F
Sbjct: 1204 IKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFH 1263
Query: 107 KLESLGVHTDEVTMVVVLAASSG 129
+ + G +EVT + VL A +
Sbjct: 1264 SMLTEGPRPNEVTFLGVLIACAN 1286
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 26/179 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
++ G +Q+ +A+ + K + G+ D +T VL T + G + +++
Sbjct: 911 LLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLG 970
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S YA G + AR D VS ++I GYSQ R E L F
Sbjct: 971 FLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFK 1030
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAKM 153
+++ V D+VTMV V++A + G +++L +I+ Y ++
Sbjct: 1031 LMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRI 1089
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY++A + EAL + + G+ E+T++ V+ A S G ++ + L +
Sbjct: 582 LIDGYTRACLYAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKG 641
Query: 61 YSLSSKTSR-----YAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
++ YA G ++ + R+ VS ++ISG++ G EALE F
Sbjct: 642 IMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELF 701
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ + +T + V+ A S G ++ G
Sbjct: 702 AEMRRAGIKPNRITFLSVINACSHGGLVEQG 732
>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
Length = 566
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
+I GYSQ RF + L F +++ GV D+VTM+ V++A + G + +A ++
Sbjct: 159 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYC 218
Query: 54 IELD------LSSY-----------------------SLSSKTSRYAHSGRIRLAR---- 80
IE+D L Y ++++ + YA I AR
Sbjct: 219 IEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFD 278
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MISGYSQA F++ALE F +++ V D + + V+++ + GALD
Sbjct: 279 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 338
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ + ++I+MY K
Sbjct: 339 GKWVHEYVRRNNIKADTIMENSLIDMYMK 367
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I G +Q+ +A+ + K + G+ D +T +L A + A +++ +L
Sbjct: 58 LIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLG 117
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L S + +S YA G + AR D VS ++I GYSQ RF + L F
Sbjct: 118 LLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFK 177
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+++ GV D+VTM+ V++A + G
Sbjct: 178 LMQNEGVKADKVTMIKVVSACTRLG 202
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGYSQA F++ALE F +++ V D + + V+++ + GA W+ +
Sbjct: 291 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 350
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S Y G + A +D +S ++I G + G E+L F
Sbjct: 351 IKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQ 410
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G + VT + VL A + ++ G
Sbjct: 411 AMLTEGFRPNGVTFLGVLIACANAKLVEEG 440
>gi|413939497|gb|AFW74048.1| hypothetical protein ZEAMMB73_972326 [Zea mays]
Length = 576
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 75/147 (51%), Gaps = 21/147 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY QAGR+ EAL F ++E+ G+ DE+T+V VL+A + A L K L ++ +
Sbjct: 306 LVGGYVQAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQNDAISLVKRLHYRMNQN- 364
Query: 61 YSLSSKTSR--------YAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEA 101
L S+ +R YA G I+ A D AMI G + G +A
Sbjct: 365 -GLVSRNARVATSFVHIYAKHGCIQTAMDVFRGITDEFKTVELFNAMIHGLAHHGYGEKA 423
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASS 128
+ F K+ESLG+ D++T V +L A S
Sbjct: 424 ISLFDKMESLGLQPDDITFVGILCACS 450
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 63/215 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE--------- 51
+I Y Q+GR AL F + G DE T+ +L A +G G +++AK
Sbjct: 169 LIGSYVQSGRVERALVVFRNMVEGGFRLDEWTIRALLGACAGLGDFMVAKAAHGFASRTL 228
Query: 52 --------------LQIELDLSSYSLSSKT------------------SRYAHSGRIRLA 79
+ + + + L+ KT S YA G I +A
Sbjct: 229 RHRLLDSGEVVIGLVDMYVKCGAVHLARKTFDLFGEKVKDVRVWSVMVSGYARVGEIGMA 288
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R D V+ ++ GY QAGR+ EAL F ++E+ G+ DE+T+V VL+A +
Sbjct: 289 RKLFDEMPNKDLVAWTVLVGGYVQAGRYKEALGLFEEMEAAGLEADEMTVVTVLSACAQN 348
Query: 131 GALDFGK-------------SNIFLTTAIIEMYAK 152
A+ K N + T+ + +YAK
Sbjct: 349 DAISLVKRLHYRMNQNGLVSRNARVATSFVHIYAK 383
Score = 36.2 bits (82), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
RD VS +I Y Q+GR AL F + G DE T+ +L A +G G DF
Sbjct: 161 RDTVSFNTLIGSYVQSGRVERALVVFRNMVEGGFRLDEWTIRALLGACAGLG--DF 214
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 72.4 bits (176), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
+IS Y++ G+F E+ F +E V VT+V+VL+A S G K +
Sbjct: 190 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 249
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
+E +L S ++ S + + G I +AR
Sbjct: 250 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 309
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMI GY ++ RF EALE F +++ V DE TMV VL A + GAL+
Sbjct: 310 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 369
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K+++F+ A+I+MY K
Sbjct: 370 GEWIRTYIDRNKIKNDLFVRNALIDMYFK 398
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY ++ RF EALE F +++ V DE TMV VLTA + GA L + ++ +D +
Sbjct: 322 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 381
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ Y G + A RD + AMI G + G +AL+ F
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
+ + DE+T + VL+A + G +D G+ T+
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTS 480
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D ++ +IS Y++ G+F E+ F +E V VT+V+VL+A S L GK
Sbjct: 183 DVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVH 242
Query: 138 ---------SNIFLTTAIIEMYA 151
SN+ L A+I+MYA
Sbjct: 243 SYVKNCKVESNLVLENAMIDMYA 265
>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 736
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 83/186 (44%), Gaps = 38/186 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
MI+GY Q+GRF EAL F +++ V ++ TMV VL+A G+W+ +
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRG 289
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L L +++ Y+ G I AR D + MI GY + EAL
Sbjct: 290 FGKNLQL----VNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEAL 345
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----------------SNIFLTTAI 146
F + V ++VT + VL A + GALD GK +N+ L T+I
Sbjct: 346 VLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSI 405
Query: 147 IEMYAK 152
I MYAK
Sbjct: 406 IVMYAK 411
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A+D VS AMI+GY Q+GRF EAL F +++ V ++ TMV VL+A +L+ GK
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280
Query: 138 -----------SNIFLTTAIIEMYAK 152
N+ L A+++MY+K
Sbjct: 281 IGSWVRDRGFGKNLQLVNALVDMYSK 306
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI GY + EAL F + V ++VT + VL A + GA L K + +D
Sbjct: 331 MIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNL 390
Query: 58 -----LSSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+++ SL +S YA G + +A R S AMISG + G AL
Sbjct: 391 KGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERAL 450
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ + G D++T V VL+A + G ++ G
Sbjct: 451 GLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 91/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
+IS Y++ G+F E+ F +E V VT+V+VL+A S G K +
Sbjct: 211 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCK 270
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
+E +L S ++ S + + G I +AR
Sbjct: 271 VESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFD 330
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMI GY ++ RF EALE F +++ V DE TMV VL A + GAL+
Sbjct: 331 KMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALEL 390
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K+++F+ A+I+MY K
Sbjct: 391 GEWIRTYIDRNKIKNDLFVRNALIDMYFK 419
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY ++ RF EALE F +++ V DE TMV VLTA + GA L + ++ +D +
Sbjct: 343 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 402
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ Y G + A RD + AMI G + G +AL+ F
Sbjct: 403 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 462
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
+ + DE+T + VL+A + G +D G+ T+
Sbjct: 463 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTS 501
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D ++ +IS Y++ G+F E+ F +E V VT+V+VL+A S L GK
Sbjct: 204 DVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVH 263
Query: 138 ---------SNIFLTTAIIEMYA 151
SN+ L A+I+MYA
Sbjct: 264 SYVKNCKVESNLVLENAMIDMYA 286
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 78/156 (50%), Gaps = 14/156 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + GRF +ALE F K++ + E TMV +L A + GA WI ++ +
Sbjct: 225 MISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKK 284
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSC-KAMISGYSQAGRFNEALEPFG 106
+L+ +++ Y+ G I A R +SC +MI G + G+ NEAL+ F
Sbjct: 285 FELNPIVVTAIIDMYSKCGSIDKAVQVFQSAPRRGLSCWNSMILGLAMNGQENEALQLFS 344
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
L+S + D+V+ + VL A G +D K L
Sbjct: 345 VLQSSDLRPDDVSFIAVLTACDHTGMVDKAKDYFLL 380
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS +MISGY + GRF +ALE F K++ + E TMV +L A + GA+ G+
Sbjct: 217 RNAVSWNSMISGYVRNGRFFDALELFQKMQVERIEPSEFTMVSLLNACACLGAIRQGEWI 276
Query: 139 -----------NIFLTTAIIEMYAK 152
N + TAII+MY+K
Sbjct: 277 HDYMVKKKFELNPIVVTAIIDMYSK 301
>gi|255577477|ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530902|gb|EEF32762.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 438
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 32/182 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVH----TDEVTMVVVLTASSG-----PGAWILAKE 51
+I G S A N + EP+ +S+ + TM VL A + G I A+
Sbjct: 201 IIRGCSYAK--NPSREPYFLYKSMVTRGFPRANTFTMAFVLKACASIMAFEEGRQIHARI 258
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
L+ L+ Y SS S Y IRLA R+ V AMISGY++ G NEAL
Sbjct: 259 LRSGFSLNPYVQSSLVSLYGKCEEIRLAKQVFDEITERNLVCWSAMISGYARVGMVNEAL 318
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
F +++ +G+ DEV++V V++A + GALD G+ ++ L TA++ MY
Sbjct: 319 SMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRMIHIDLELNTALVNMY 378
Query: 151 AK 152
AK
Sbjct: 379 AK 380
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 70/127 (55%), Gaps = 22/127 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
MISGY++ G NEAL F +++ +G+ DEV++V V++A + GA WI A +
Sbjct: 304 MISGYARVGMVNEALSMFREMQEVGIEPDEVSLVGVISACAMAGALDIGRWIHAYIKKRM 363
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEAL 102
+ I+L+L+ ++ + YA G I A++ PV + +MI G + G +AL
Sbjct: 364 IHIDLELN----TALVNMYAKCGCIEKAKEIFDYMPVKDSKAWSSMIVGLAIHGLAEDAL 419
Query: 103 EPFGKLE 109
E F ++E
Sbjct: 420 EMFSRME 426
>gi|242079801|ref|XP_002444669.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
gi|241941019|gb|EES14164.1| hypothetical protein SORBIDRAFT_07g025740 [Sorghum bicolor]
Length = 581
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+ISGY + G N+AL+ FG++ V D+VT++ L AS+ G + + +
Sbjct: 167 IISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRLCHSLVVVNG 226
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y SS S YA G + AR + V +MISGY+Q G+F EA+ F
Sbjct: 227 AGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKEAVNLFR 286
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D+ T+ V+++ + GALD G+ + + ++I+MY+K
Sbjct: 287 DMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSK 344
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G+F EA+ F ++ G+ D+ T+ V+++ + GA L + + D+
Sbjct: 268 MISGYTQLGKFKEAVNLFRDMQITGMKVDDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 327
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LS K S Y+ G I A RD S AMI G++ G +EAL+ F
Sbjct: 328 LGKELSVKNSLIDMYSKCGDINKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCSEALDLFA 387
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
++E G V +EVT + VL + S G ++ G
Sbjct: 388 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQG 418
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A D VS +ISGY + G N+AL+ FG++ V D+VT++ L AS+ G + G+
Sbjct: 158 ACDTVSWNTIISGYLRGGMPNKALQAFGQMVKEQVTLDDVTLLNALVASAKAGKVKVGRL 217
Query: 138 -----------SNIFLTTAIIEMYAK 152
N ++ +++I MYAK
Sbjct: 218 CHSLVVVNGAGINCYMGSSLISMYAK 243
>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
Length = 787
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + GA + L+
Sbjct: 180 MVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S YA +G + +A R+ VS AMISG++Q G+ +EAL F
Sbjct: 240 MRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFR 299
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G+ D +V L A S G L G+S N L TA I+MY+K
Sbjct: 300 NMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILGTAAIDMYSK 356
Score = 42.0 bits (97), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD V+ M++G+ AG+ +A++ + ++ GV DEV M+ V+ A + + G S
Sbjct: 172 RDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVRMGASV 231
Query: 139 -----------NIFLTTAIIEMYAK 152
++ T++++MYAK
Sbjct: 232 HGHLLRHGMRMDVVTATSLVDMYAK 256
>gi|242063508|ref|XP_002453043.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
gi|241932874|gb|EES06019.1| hypothetical protein SORBIDRAFT_04g037320 [Sorghum bicolor]
Length = 578
Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 83/162 (51%), Gaps = 22/162 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY QAGR EAL+ F ++E+ G+ DEVT+V VL+A GA LAK L ++ +
Sbjct: 307 LVGGYVQAGRCKEALQLFEEMEATGLEADEVTVVTVLSACVQHGAIGLAKRLHRRVNQN- 365
Query: 61 YSLSSKTSR--------YAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEA 101
L S+ +R YA G I+ A D AMI G + G +A
Sbjct: 366 -GLVSRNARVATSFVHIYAKHGCIQTAMDVFRGVTDEFKTVELFNAMIHGLAHHGYGEKA 424
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
+ F ++E+L + D++T V VL A S ++ G+ +FL+
Sbjct: 425 ISLFDEMETLELQPDDITFVGVLCACSHSNLVEQGR-KMFLS 465
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 63/215 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+IS Y Q+G AL F + G DE T+ +L A +G G ++AK
Sbjct: 170 LISSYVQSGCVERALGVFRDMVEGGFRLDEWTITALLGACAGLGDLMVAKAAHGFASRAL 229
Query: 54 -----------------------IELDLSSYSL---SSKTSR--------YAHSGRIRLA 79
++L +++L +K +R YA +G I +A
Sbjct: 230 RHTLFDSAEVVIGLVDMYVKCGAVQLSRRAFNLFGDKTKDARIWSVMMSGYARAGEIYMA 289
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R D V+ ++ GY QAGR EAL+ F ++E+ G+ DEVT+V VL+A
Sbjct: 290 RNLFDEMPNKDLVAWTVLVGGYVQAGRCKEALQLFEEMEATGLEADEVTVVTVLSACVQH 349
Query: 131 GALDFGK-------------SNIFLTTAIIEMYAK 152
GA+ K N + T+ + +YAK
Sbjct: 350 GAIGLAKRLHRRVNQNGLVSRNARVATSFVHIYAK 384
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY++ G + EALE F ++ V DE TMV VL+A + + L +++ +D
Sbjct: 206 LISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHG 265
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y G + A +D +S +I GY+ + EAL F
Sbjct: 266 FGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ 325
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G +EVTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 326 EMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAK 385
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G +EVTM+ +L A + GA + + + + +D
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRL 366
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+S+ +S YA G I L R S AMI G++ GR N A +
Sbjct: 367 KGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDI 426
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 427 FSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR-HIF 462
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS A+ISGY++ G + EALE F ++ V DE TMV VL+A + +++ G+
Sbjct: 198 KDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQV 257
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+ + A+I++Y K
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIK 282
>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
Length = 531
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 23/174 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--GPGAWILAKELQIELDL 58
MIS Y+ G +EAL+ + ++++ G+ D +T L A + G I A+ + ++
Sbjct: 29 MISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLADGKAIHARIVSSNME- 87
Query: 59 SSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFGKLE 109
S + S+ + YA G + AR V ++++ Y Q G + EAL+ +G+++
Sbjct: 88 SDFVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRMD 147
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
GVH D VT V L A + GAL GK+ ++ + TA++ MYAK
Sbjct: 148 HEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAK 201
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 56/208 (26%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
+++ Y Q G + EAL+ +G+++ GVH D VT V L A + GA K + +
Sbjct: 126 LMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHLRVSECG 185
Query: 55 ------------------ELDLSSYSLSSKTSR----------YAHSGRIRLAR------ 80
ELD + + S YA G + LA+
Sbjct: 186 FQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLELAKSAFEAS 245
Query: 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
D VS AMI Y+Q G EAL+ + + S GV DEVT+ L+A + G+L G+
Sbjct: 246 GRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGR 305
Query: 138 -------------SNIFLTTAIIEMYAK 152
S++ + TA++ MY +
Sbjct: 306 EIHSRVLKNQSFQSSLMVQTALVNMYGR 333
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y+Q G EAL+ + + S GV DEVT+ L+A + G+ L +E+ + L +
Sbjct: 256 MIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRV-LKN 314
Query: 61 YSLSSK-------TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
S S + Y GR+ A RD +S AM S Y+Q G ++ L+
Sbjct: 315 QSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDL 374
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ ++ G+ +E+T +L S G L G
Sbjct: 375 YLEMVLHGIRPNEITFTSILVGCSHAGLLARG 406
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 14/84 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS +MIS Y+ G +EAL+ + ++++ G+ D +T L A + L GK
Sbjct: 21 RDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACT---KLADGKAI 77
Query: 138 ------SNI---FLTTAIIEMYAK 152
SN+ F+ +A+I MYA+
Sbjct: 78 HARIVSSNMESDFVGSALINMYAR 101
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 72.0 bits (175), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GYS AGRF+E L F ++ GV D T+V VL+A + GA W+ A +
Sbjct: 242 MITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNG 301
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ Y+ G I L +D + ++ISG S G AL+ F
Sbjct: 302 ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFS 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI------IEMYAKM 153
++ G +EVT V VL+A S G LD G+ L + IE Y M
Sbjct: 362 EMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCM 414
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
++ VS AMI+GYS AGRF+E L F ++ GV D T+V VL+A + GAL G
Sbjct: 234 KNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWV 293
Query: 137 -----KSNI----FLTTAIIEMYAK 152
K+ I F+ TA+++MY+K
Sbjct: 294 HAYIDKNGISIDGFVATALVDMYSK 318
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 72.0 bits (175), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GYS AGRF+E L F ++ GV D T+V VL+A + GA W+ A +
Sbjct: 212 MITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNG 271
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ Y+ G I L +D + ++ISG S G AL+ F
Sbjct: 272 ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFS 331
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI------IEMYAKM 153
++ G +EVT V VL+A S G LD G+ L + IE Y M
Sbjct: 332 EMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCM 384
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 24/121 (19%)
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALE 103
+E D+ S++ + S YA G + LA ++ VS AMI+GYS AGRF+E L
Sbjct: 170 LERDVVSWN--ALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLV 227
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYA 151
F ++ GV D T+V VL+A + GAL G K+ I F+ TA+++MY+
Sbjct: 228 LFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYS 287
Query: 152 K 152
K
Sbjct: 288 K 288
>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGYS+ EA+ F ++ G +E+++V VL A G W+ ++ +
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENK 258
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L+ + S+ Y G + AR D V+ AMI+GY+Q G EA++ F
Sbjct: 259 MTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ D++T++ +L+A + GALD GK ++++ TA+++MYAK
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAK 376
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY+Q G EA++ F + D++T++ +L+A + GA L K+++I
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ YA G + A ++ VS AMIS + G+ EAL F
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFK 419
Query: 107 KLESLG--VHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ + G V +++T V VL+A G +D G+ S+ F IE Y+ M
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCM 474
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 35/183 (19%)
Query: 1 MISGYSQA-GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-------- 51
MI G S A + + ALE + +++ LG+ + +T + A S +LA E
Sbjct: 97 MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSN----LLAVENGRMGHCS 152
Query: 52 -LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
++ LD + S + YA G++ AR D VS +MISGYS+ EA
Sbjct: 153 VIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEA 212
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
+ F ++ G +E+++V VL A G L G N F+ +A+I M
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272
Query: 150 YAK 152
Y K
Sbjct: 273 YGK 275
>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Cucumis sativus]
Length = 619
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGYS+ EA+ F ++ G +E+++V VL A G W+ ++ +
Sbjct: 199 MISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENK 258
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L+ + S+ Y G + AR D V+ AMI+GY+Q G EA++ F
Sbjct: 259 MTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQ 318
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ D++T++ +L+A + GALD GK ++++ TA+++MYAK
Sbjct: 319 DMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAK 376
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY+Q G EA++ F + D++T++ +L+A + GA L K+++I
Sbjct: 300 MITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERG 359
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ YA G + A ++ VS AMIS + G+ EAL F
Sbjct: 360 FQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFK 419
Query: 107 KLESLG--VHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ + G V +++T V VL+A G +D G+ S+ F IE Y+ M
Sbjct: 420 SMMNEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCM 474
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 81/183 (44%), Gaps = 35/183 (19%)
Query: 1 MISGYSQA-GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-------- 51
MI G S A + + ALE + +++ LG+ + +T + A S +LA E
Sbjct: 97 MIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSN----LLAVENGRMGHCS 152
Query: 52 -LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
++ LD + S + YA G++ AR D VS +MISGYS+ EA
Sbjct: 153 VIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEA 212
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
+ F ++ G +E+++V VL A G L G N F+ +A+I M
Sbjct: 213 VGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSALIHM 272
Query: 150 YAK 152
Y K
Sbjct: 273 YGK 275
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 15/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M++GY+Q G +EA+ F +++ G+ D++T VLT+ S P K + +L
Sbjct: 321 MVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGY-SQAGRFNEALEPF 105
+L Y S+ S YA G + A R+ V+ A+I+G +Q GR EALE F
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYF 440
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
+++ G+ D+VT VL+A + G ++ G+ +
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHF 475
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G+ + ALE ++ V +++T +L + P A K++ + S
Sbjct: 220 LIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSG 279
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++S + Y G + AR D V+ AM++GY+Q G +EA+ F
Sbjct: 280 YGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFR 339
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ D++T VL + S P L GK +++L +A++ MYAK
Sbjct: 340 RMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAK 397
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI + + EA + + ++ G D+VT V +L A + P L +++ +E
Sbjct: 119 MIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAG 178
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+L +S YA G I AR + V+ +I+GY+Q G+ + ALE
Sbjct: 179 LELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLE 238
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ V +++T +L + P AL+ GK +++ ++I MY K
Sbjct: 239 TMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCK 296
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ GY Q G +AL+ +++ G+ D T++ L++ PGA +E+ + +
Sbjct: 97 MVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAG 156
Query: 61 YSLSSKTSR-----YAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
K + YA G I AR+ VS I GY+ GR A E F
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQ 216
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+E GV + +T + VL A S P AL +GK S+ + TA+++MYAK
Sbjct: 217 KMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAK 274
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G ++ G + EA E + +++ GV +++T V++L A A KE+ + +
Sbjct: 299 MIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAG 358
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ S Y+ G I+ AR D +S AMI G +++G EAL +
Sbjct: 359 FTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQ 418
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ GV + VT +L A S P AL++G+
Sbjct: 419 EMQQAGVEPNRVTYTSILNACSSPAALEWGR 449
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA--W---ILAKELQIE 55
MI G +++G EAL + +++ GV + VT +L A S P A W I + ++
Sbjct: 400 MIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAG 459
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ ++ + Y+ G ++ + RD V+ AMI GY+ EAL+ F
Sbjct: 460 LATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFD 519
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ D+VT + +L A + G+L++ + S+ + A++ YAK
Sbjct: 520 RLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAK 577
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 23/117 (19%)
Query: 59 SSYSLSSKTSRYAHSGRIRLARDPV-----------SCKAMISGYSQAGRFNEALEPFGK 107
Y++++ + Y G I AR S AM+ GY Q G +AL+ +
Sbjct: 57 DQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQ 116
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ D T++ L++ PGAL++G+ ++ + I+ MYAK
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAK 173
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
+I GYSQ RF + L F +++ GV D+VTM+ V++A + G + +A ++
Sbjct: 624 LICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYC 683
Query: 54 IELD------LSSY-----------------------SLSSKTSRYAHSGRIRLAR---- 80
IE+D L Y ++++ + YA I AR
Sbjct: 684 IEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFD 743
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MISGYSQA F++ALE F +++ V D + + V+++ + GALD
Sbjct: 744 QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDL 803
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ + ++I+MY K
Sbjct: 804 GKWVHEYVRRNNIKADTIMENSLIDMYMK 832
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I G +Q+ +A+ + K + G+ D +T +L A + A +++ +L
Sbjct: 523 LIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLG 582
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L S + +S YA G + AR D VS ++I GYSQ RF + L F
Sbjct: 583 LLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFK 642
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+++ GV D+VTM+ V++A + G
Sbjct: 643 LMQNEGVKADKVTMIKVVSACTRLG 667
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI GY++A R EA+ F ++ + G+ E+T++ V+ A S G ++ + L
Sbjct: 192 MIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEG 251
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI----RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ + S L +K +S R+ R+ VS ++ISG++ G +A+E F
Sbjct: 252 LVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELF 311
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+ G+ + +T + VL A S G ++ G + F + I E
Sbjct: 312 ADMRRAGIRPNRITFLSVLHACSHGGLVEQGVA--FFKSMIYE 352
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGYSQA F++ALE F +++ V D + + V+++ + GA W+ +
Sbjct: 756 MISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNN 815
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S Y G + A +D +S ++I G + G E+L F
Sbjct: 816 IKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQ 875
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G + VT + VL A + ++ G
Sbjct: 876 AMLTEGFRPNGVTFLGVLIACANAKLVEEG 905
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
R+ VS MI GY++A R EA+ F ++ + G+ E+T++ V+ A S G + G++
Sbjct: 183 CRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEA 242
Query: 139 ------------NIFLTTAIIEMYAKM 153
++ + ++I++YAK+
Sbjct: 243 LHGYCEKEGLVWDVRVGNSLIDLYAKI 269
>gi|255571517|ref|XP_002526706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534006|gb|EEF35728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 461
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY G++ EA++ F ++ G+ D T+V VL+A G WI +
Sbjct: 186 IISGYIGVGKYREAIDLFRRMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENV 245
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S YA G + AR D VS AMI GY+ G +AL+ F
Sbjct: 246 MARNVFVTTSLVDLYAKHGNMEKARCLFDGMAERDIVSWSAMIQGYASNGLPKDALDLFF 305
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ + G+ D MV L A + GAL+ G +N L TA+I+MYAK
Sbjct: 306 KMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTEFFTNHVLGTALIDMYAK 363
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIEL- 56
MI G + F E++E + + G + T V+ A + + I+ L ++L
Sbjct: 85 MIRGLVSSDCFTESIEFYYSMRKKGFLPNNFTFPFVIKACARLLDFQLGIMMHTLVVKLG 144
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D + + +S S YA G I A + VS A+ISGY G++ EA++ F
Sbjct: 145 FDCNLFVNTSLVSLYAKCGSIDDALKMLDLIPESNIVSWTAIISGYIGVGKYREAIDLFR 204
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D T+V VL+A G L G+ N+F+TT+++++YAK
Sbjct: 205 RMLETGLRPDSFTIVQVLSACIQIGDLANGEWIDRYITENVMARNVFVTTSLVDLYAK 262
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G +AL+ F K+ + G+ D MV L A + GA L +D +
Sbjct: 287 MIQGYASNGLPKDALDLFFKMLNAGLKPDHYAMVGFLCACARLGALELGDWGSNLMDRTE 346
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + A +D A ISG + G A FG
Sbjct: 347 FFTNHVLGTALIDMYAKCGSMAKAWEVFKGIKGKDRAVWNAAISGLAMNGHEKAAFGLFG 406
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E G+ D T V +L + G +D G+
Sbjct: 407 QMERFGIQPDGNTFVGLLCGCTHAGLVDEGR 437
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
+I GYSQ ++ E L F + + + D VTMV ++ A S G W A KE
Sbjct: 188 LICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENN 247
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
+E+D+ + S ++ +A G + AR
Sbjct: 248 LEIDVYLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFD 307
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MI+GYSQA +F++A++ F ++ + V D+VT+ VL+A + G LD
Sbjct: 308 NMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDV 367
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G +++I++ ++I+MY K
Sbjct: 368 GWAVHHYIRRHGVQADIYVGNSLIDMYCK 396
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MI G SQ+ EA+ + ++ G+ + +T++ + A + + +++ + +L
Sbjct: 87 MIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLG 146
Query: 58 LSSYSLSSKT--SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SY S YA G++ A RD VS +I GYSQ ++ E L F
Sbjct: 147 FESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFD 206
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + + D VTMV ++ A S G +F S +++L +I+MY +
Sbjct: 207 AMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGR 264
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AWILAKELQ--- 53
MI+GYSQA +F++A++ F ++ + V D+VT+ VL+A + G W + ++
Sbjct: 320 MITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHG 379
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ D+ Y +S Y G + A +D VS ++ISG + G N AL+
Sbjct: 380 VQADI--YVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDL 437
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ GV T V +L A + G ++ G
Sbjct: 438 FSQMLREGVQPTHGTFVGILLACAHAGLVNKG 469
>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
Length = 684
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 87/177 (49%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV-----LTASSGPGAWILAKELQIE 55
M++G+ AGR EAL + ++ GV DEV MV V LT ++ GA + + L+
Sbjct: 183 MVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHG 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S YA +G +AR + VS A+ISG++Q G +EAL+ F
Sbjct: 243 MRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFR 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
++ + G+ D +V L A + G L GKS L TA+++MY+K
Sbjct: 303 EMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILGTAVLDMYSK 359
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ S+AG AL F L S D T + LTA + G A+ +++ +
Sbjct: 83 LLAARSRAGSPGAALRVFRALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAG 141
Query: 61 YS-----LSSKTSRYAHSGR----IRL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ Y+ G IR+ +D V+ M++G+ AGR EAL +
Sbjct: 142 YGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYS 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ GV DEV MV V+ A + G G S ++ + T++++MYAK
Sbjct: 202 RMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAK 259
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
+ISG++Q G +EAL+ F ++ + G+ D +V L A + G L K
Sbjct: 284 LISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRL 343
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRI--RLA-RDPVSCKAMISGYSQAGRFNEALEPFGK 107
E Q L + + SK + ++ +L+ RD V AMI+ G ++AL F +
Sbjct: 344 EFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQE 403
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L G+ D T +L+A S G ++ GK
Sbjct: 404 LNETGIKPDHATFASLLSALSHSGLVEEGK 433
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
MI+GYS+ G EAL F +++++GV DEVTMV V++A + GA W+ A K
Sbjct: 199 MINGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKG 258
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I AR D + AMI G++ G +AL
Sbjct: 259 ITVDLELS----TALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVEDAL 314
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ L V + VT + VL+A + G +D G+
Sbjct: 315 GLFSRMLELKVRPNNVTFIGVLSACAHSGLVDDGR 349
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 22/135 (16%)
Query: 40 SSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDP----------VSCKAMI 89
+ G G + A+ L+ L+ S+Y + + YA ++ LAR V+ AMI
Sbjct: 141 APGEGRQLHAQALRQGLEASAYVQTGLLNLYAKCEQVALARTVFDGMAPDKSLVAWSAMI 200
Query: 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------ 137
+GYS+ G EAL F +++++GV DEVTMV V++A + GALD GK
Sbjct: 201 NGYSRVGMVTEALGLFREMQAVGVEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGIT 260
Query: 138 SNIFLTTAIIEMYAK 152
++ L+TA+I+MYAK
Sbjct: 261 VDLELSTALIDMYAK 275
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q G+ EAL +G+++ + +E+TM VL A S A L + QI
Sbjct: 386 IIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAA--LEQGKQIHARTIK 443
Query: 61 YSL-------SSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEP 104
Y L S+ ++ YA G R L RD VS AMISG SQ G EALE
Sbjct: 444 YGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALEL 503
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI------FLTTAIIEMYAKM 153
F ++ G D +T V VL+A S G + G + F +E YA M
Sbjct: 504 FEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACM 558
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GYSQAG ++AL+ F K+ G E T+V VL A S A K+ L S
Sbjct: 285 LITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSG 344
Query: 61 Y--------SLSSKTSRYAHSGRIR------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y +L +++ +G R L D V ++I+GY Q G+ EAL +G
Sbjct: 345 YETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYG 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ + +E+TM VL A S AL+ GK
Sbjct: 405 RMQMRKILPNELTMASVLKACSNLAALEQGKQ 436
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MISGY+ EAL FG + + + +E VL+A P K++
Sbjct: 184 MISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNG 243
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L+ S L++ + YA G + + ++ ++ A+I+GYSQAG ++AL+ F
Sbjct: 244 VLEFVSV-LNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLF 302
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G E T+V VL A S A++ GK + I+ TA+++MYAK
Sbjct: 303 SKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAK 361
>gi|255563405|ref|XP_002522705.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538055|gb|EEF39667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP---------GAWILAKE 51
+ISGY+Q G+ EAL F ++ + V D++ +V VL A + ++
Sbjct: 217 IISGYAQNGQPIEALRIFNQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 276
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L+ E+DL L S T+ YA G++ AR + + AMISGY++ G EAL
Sbjct: 277 LEFEIDL----LISLTAMYAKCGQVMFARLFFDQVRIPNLILWNAMISGYAKNGYAEEAL 332
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMY 150
E F ++ ++ D +T+ V+ A + G+L+ +++ F+++A+I+M+
Sbjct: 333 ELFRRMITMNFGPDSITITSVILACAQMGSLELARWMSDYIGRSEFRNDAFVSSALIDMF 392
Query: 151 AK 152
+K
Sbjct: 393 SK 394
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW------ILAKELQI 54
+I Y++ F A+E + +++ + D T +VL A + A+ + + +
Sbjct: 115 IIRCYTRQNLFCNAIEMYARMQIACIRPDGFTFPLVLKACTASLAFLDIGRRVHGQAFRH 174
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L+ + + + YA +I LA R VS ++ISGY+Q G+ EAL F
Sbjct: 175 GLEADVFVQNGLVTFYAKCRKISLANIVFGRLSDRSIVSWTSIISGYAQNGQPIEALRIF 234
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + V D++ +V VL A + L+ GKS I L ++ MYAK
Sbjct: 235 NQMREVNVKPDQIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLEFEIDLLISLTAMYAK 293
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F ++ V DE TMV VL+A + + L +++ +D
Sbjct: 169 MISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHG 228
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G++ A +D VS +I GY+ + EAL F
Sbjct: 229 FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQ 288
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VT+V +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 289 EMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAK 348
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q GR +A + F + H D V+ ++T + G A+E+ E+ +
Sbjct: 107 LISMYAQNGRLEDAHKVFDR----SSHRDVVSYTALITGYASSGNIRSAQEMFDEIPV-- 160
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F ++ V DE TM
Sbjct: 161 -------------------KDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTM 201
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V VL+A + +++ G+ SN+ + A+I++Y+K
Sbjct: 202 VTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSK 245
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VT+V +L A + GA + + + + +D
Sbjct: 270 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKKL 329
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ S YA G I L + S AMI G++ GR N +
Sbjct: 330 KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDL 389
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 390 FSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR-HIF 425
>gi|413925046|gb|AFW64978.1| hypothetical protein ZEAMMB73_457124 [Zea mays]
Length = 592
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+ISGY + G N+AL+ FG++ V D+VT++ L AS+ G + + +
Sbjct: 31 IISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRLCHSLVVVNG 90
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y SS S YA G + AR + V +MISGY+Q G+F +A++ F
Sbjct: 91 AGINCYMGSSLISMYAKCGLVEDARKVFHGMHERNVVCWTSMISGYTQLGKFKKAVDLFR 150
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D+ T+ V+++ + GALD G+ + + ++I+MY+K
Sbjct: 151 DMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHGLGKELSVKNSLIDMYSK 208
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G+F +A++ F ++ G+ D+ T+ V+++ + GA L + + D+
Sbjct: 132 MISGYTQLGKFKKAVDLFRDMQITGMKADDGTIATVVSSCAQMGALDLGRYVHAYCDVHG 191
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LS K S Y+ G I A RD S AMI G++ G NEAL+ F
Sbjct: 192 LGKELSVKNSLIDMYSKCGDITKAHEIFCGLTKRDVFSWTAMIMGFTVNGLCNEALDLFA 251
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
++E G V +EVT + VL + S G ++ G
Sbjct: 252 QMEGEGKVMPNEVTFLGVLTSCSHGGLVEQG 282
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A D VS +ISGY + G N+AL+ FG++ V D+VT++ L AS+ G G+
Sbjct: 22 ACDTVSWNTIISGYLRCGMPNKALQAFGQMVKEPVRLDDVTLLNALVASAKAGKAKVGRL 81
Query: 138 -----------SNIFLTTAIIEMYAK 152
N ++ +++I MYAK
Sbjct: 82 CHSLVVVNGAGINCYMGSSLISMYAK 107
>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
Length = 710
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 32/182 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G EAL+ F ++ V DE TMV V++A + G+ L +++ +D
Sbjct: 206 IISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWID--D 263
Query: 61 YSLSSK-------TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L S Y+ G + A +D +S MI GY+ + EAL
Sbjct: 264 HGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLL 323
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMY 150
F ++ G + ++VTM+ +L A + GA+DFG+ +++ L T++I+MY
Sbjct: 324 FQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMY 383
Query: 151 AK 152
AK
Sbjct: 384 AK 385
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ + EAL F ++ G + ++VTM+ +L A + GA + + + +D
Sbjct: 307 MIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRI 366
Query: 61 YSLSSKTS-------RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I A R +C AMI G++ GR N A +
Sbjct: 367 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDI 426
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ G+ D++T V +L+A S G LD G+
Sbjct: 427 FSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 459
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 72/155 (46%), Gaps = 34/155 (21%)
Query: 23 SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY----SLSSKTSRYAHSGRIRL 78
L VHT ++M V G W K+ D SS+ S ++ + YA G I
Sbjct: 137 DLYVHTSLISMYV------KNGRW---KDAHKVFDGSSHRDVVSYTALITGYASRGYIES 187
Query: 79 A---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
A +D VS A+ISGY+ G EAL+ F ++ V DE TMV V++A +
Sbjct: 188 AQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQ 247
Query: 130 PGALDFGK------------SNIFLTTAIIEMYAK 152
G++ G+ SN+ + A+I++Y+K
Sbjct: 248 SGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSK 282
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY AG N+AL+ F ++ V D+VT++ L A + + K L
Sbjct: 167 IIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNG 226
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y SS S YA G++ AR + V +MISGY+Q G+ EA++ F
Sbjct: 227 FEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFR 286
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+ T+ V+++ GALD G+ +I + ++I+MY+K
Sbjct: 287 DMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSK 344
Score = 43.1 bits (100), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A D VS +I+GY AG N+AL+ F ++ V D+VT++ L A + + GK
Sbjct: 158 ASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKL 217
Query: 138 -----------SNIFLTTAIIEMYAK 152
N ++ +++I MYAK
Sbjct: 218 CHALLVTNGFEINCYMGSSLISMYAK 243
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY AG N+AL+ F ++ V D+VT++ L A + + K L
Sbjct: 167 IIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKLCHALLVTNG 226
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y SS S YA G++ AR + V +MISGY+Q G+ EA++ F
Sbjct: 227 FEINCYMGSSLISMYAKCGQVEDARRIFDGMPDRNAVCWTSMISGYTQLGQSKEAIKLFR 286
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+ T+ V+++ GALD G+ +I + ++I+MY+K
Sbjct: 287 DMQIAGVKVDDATISTVVSSCGQMGALDLGRYVHAYCDIHGLGKDISVKNSLIDMYSK 344
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A D VS +I+GY AG N+AL+ F ++ V D+VT++ L A + + GK
Sbjct: 158 ASDTVSWNTIIAGYIHAGLPNKALQAFSQMAKGQVMLDDVTLLNALVACARTCMMKVGKL 217
Query: 138 -----------SNIFLTTAIIEMYAK 152
N ++ +++I MYAK
Sbjct: 218 CHALLVTNGFEINCYMGSSLISMYAK 243
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 88/213 (41%), Gaps = 64/213 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPG--------------- 44
+ISG+++ RF EA F + G VT V VL+A G G
Sbjct: 115 LISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRVVGS 174
Query: 45 ------------------------AWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR 80
AW L +Q+ +S SL S +R GR+ AR
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL---GRVDEAR 231
Query: 81 D---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
D VS AMI GY QA RF EALE F +++ V DE TMV V+ A + G
Sbjct: 232 DLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291
Query: 132 ALDFG------------KSNIFLTTAIIEMYAK 152
AL+ G K + F+ A+I+MY+K
Sbjct: 292 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSK 324
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY QA RF EALE F +++ V DE TMV V+TA + GA W+ +
Sbjct: 248 MIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQG 307
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ ++ Y+ G I A RD + A+I G + G EA+E F
Sbjct: 308 IKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFH 367
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + DEVT + VL A + G +D G+
Sbjct: 368 RMIGVSETPDEVTFIGVLTACTHAGLVDKGR 398
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
MIS Y+Q G +++ F +++ +E+T+ VL+ + G + K+L +
Sbjct: 199 MISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKN 258
Query: 58 LSSYSLSSKT--SRYAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S + S Y G + RL RD V+ AMI+GY+Q GR NEALE F
Sbjct: 259 LGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFE 318
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++S + ++VT+V VL+A + G+++ G+ SN+++ +A++ MY+K
Sbjct: 319 NMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSK 376
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 21/106 (19%)
Query: 68 SRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
S Y+ SG + AR+ VS AMIS Y+Q G +++ F +++ +E+
Sbjct: 170 SAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEI 229
Query: 119 TMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
T+ VL+ + G L+ G SN+ ++TA++EMY K
Sbjct: 230 TLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVK 275
>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Vitis vinifera]
Length = 729
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 86/165 (52%), Gaps = 16/165 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY+Q G EAL F ++ + G+ DE T V V++A S G LA L Q
Sbjct: 231 MLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKR 290
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L+ + ++ YA G + A R+ V+ +MI+GY+Q G+ A+E F
Sbjct: 291 IQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFK 350
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFGKSNI-FLTTAIIEM 149
++ + T DEVTMV V++A GAL+ G + FLT I++
Sbjct: 351 EMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKL 395
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGA-----WILA--KEL 52
MI+GY+Q G+ A+E F ++ + T DEVTMV V++A GA W++ E
Sbjct: 332 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 391
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
QI+L +S ++ + S+ + R+ RD VS +ISG++ G EA+
Sbjct: 392 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 451
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
++ G+ D VT + VL A S G L+ G+ +F + I+ YA M
Sbjct: 452 STMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK-VFESIKDPAIDHYACM 500
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AM+SGY+Q G EAL F ++ + G+ DE T V V++A S G S
Sbjct: 223 RSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASL 282
Query: 139 -----------NIFLTTAIIEMYAK 152
N F+ TA+++MYAK
Sbjct: 283 VRTLHQKRIQLNCFVRTALLDMYAK 307
>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAW----ILAKE 51
MISGY Q G NEA+E F K+ V D T V VL+A S G W I+
Sbjct: 180 MISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSG 239
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR------LARDPVSCKAMISGYSQAGRFNEALEPF 105
+ + + L++ SL + SR GR R + + V AMISGY G EA+E F
Sbjct: 240 ITMNVVLAT-SLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVF 298
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++++ GV + VT V VL+A + G +D G+S
Sbjct: 299 HRMKARGVVPNSVTFVAVLSACAHAGLIDEGRS 331
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R V+ +MISGY Q G NEA+E F K+ V D T V VL+A S G+LDFG
Sbjct: 172 RSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWL 231
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T+++ M+++
Sbjct: 232 HDCIVGSGITMNVVLATSLVNMFSR 256
>gi|356532311|ref|XP_003534717.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 755
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MISG Q G ++AL F ++ GV TM V+TA + G++ IL L+ E
Sbjct: 332 MISGLVQNGSADKALAVFRQMLKFGVKPSTATMASVITACAQLGSYNLGTSILGYILRQE 391
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L + +S + YA G + + RD VS AM++GY+Q G EAL F
Sbjct: 392 LPLDVATQNSLVTMYAKCGHLDQSSIVFDMMNRRDLVSWNAMVTGYAQNGYVCEALFLFN 451
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S D +T+V +L + G L GK I + T++++MY K
Sbjct: 452 EMRSDNQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 509
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-------PGAWILAKELQ 53
+I YS+ GR EA F ++ G+ VT++ +L S G IL +
Sbjct: 133 IIGCYSRTGRVPEAFSLFDEMRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMS 192
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+++LS +S + Y G I + RD VS ++IS Y+Q G E L
Sbjct: 193 -DINLS----NSMLNVYGKCGNIEYSRKLFDYMDHRDLVSWNSLISAYAQIGNICEVLLL 247
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ G T VL+ ++ G L G+
Sbjct: 248 LKTMRLQGFEAGPQTFGSVLSVAASRGELKLGRC 281
Score = 35.8 bits (81), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-----L 56
I+ +S G ++ L + + V +D T +L A S + L L L
Sbjct: 33 INHHSTQGAHHQVLATYASMLKTHVPSDAYTFPSLLKACSFLNLFSLGLTLHQRILVSGL 92
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L +Y SS + YA G +AR + V +I YS+ GR EA F +
Sbjct: 93 SLDAYIASSLINFYAKFGFADVARKVFDYMPERNVVPWTTIIGCYSRTGRVPEAFSLFDE 152
Query: 108 LESLGVHTDEVTMVVVLAASS---------GPGALDFGKSNIFLTTAIIEMYAK 152
+ G+ VT++ +L S G L S+I L+ +++ +Y K
Sbjct: 153 MRRQGIQPSSVTVLSLLFGVSELAHVQCLHGCAILYGFMSDINLSNSMLNVYGK 206
>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
Length = 704
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI GY Q+G A+ F K+ GV VT++ L A + G K + Q++
Sbjct: 203 MIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLK 262
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LD ++S S Y+ R+ +A D VS AMI GY+Q G NEAL F
Sbjct: 263 LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFC 322
Query: 107 KLESLGVHTDEVTMVVVLAASS------------GPGALDFGKSNIFLTTAIIEMYAK 152
+++S + D TMV V+ A + G F N+F+ TA+++MYAK
Sbjct: 323 EMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAK 380
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI GY+Q G NEAL F +++S + D TMV V+ A + WI ++
Sbjct: 304 MILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF 363
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD + + +++ YA G I AR ++ AMI GY G ++E F
Sbjct: 364 LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFK 423
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + +++T + L+A S G ++ G
Sbjct: 424 EMKKGTIKPNDITFLCALSACSHSGLVEEG 453
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G AL ++ G D +T+V +L A + + L+I + +
Sbjct: 102 MISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVAD------TRLLRIGMAVHG 155
Query: 61 YSL-----------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNE 100
Y L ++ Y+ G + +AR VS +MI GY Q+G
Sbjct: 156 YVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEG 215
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
A+ F K+ GV VT++ L A + G L+ GK S++ + ++I
Sbjct: 216 AMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLIS 275
Query: 149 MYAK 152
MY+K
Sbjct: 276 MYSK 279
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ GY+++ + AL F +++ V +L KE+ + S
Sbjct: 1 MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ + YA +I A RD V MISGY+Q G AL
Sbjct: 61 FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G D +T+V +L A + L G +S + ++TA+++MY+K
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178
>gi|302788029|ref|XP_002975784.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
gi|300156785|gb|EFJ23413.1| hypothetical protein SELMODRAFT_150748 [Selaginella moellendorffii]
Length = 590
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI Y+Q GR NEA F ++ES G+ + VT + VL A S A+I A E
Sbjct: 12 MIGAYAQNGRRNEAFLLFERMESEGIRPNAVTCLHVLGACSCQNELPFGKKVHAYISASE 71
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ ++ L +S + YA G + AR D +S MIS Y+Q+GR +EA+
Sbjct: 72 FKWDISLQ----TSLVNMYAKCGNLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAI 127
Query: 103 EPFGKLES-LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
E + +ES V + VT V V+ A +G G + G+ +++ + +A++++
Sbjct: 128 EIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSLGLETDVAVGSALVQL 187
Query: 150 YAK 152
Y K
Sbjct: 188 YVK 190
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y+QAGR EAL + + S + + VT VL+A S G + +++ L+ +
Sbjct: 348 MIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSSLEGKA 407
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L +S S YA G +R A RD S M++ ++ G ALE
Sbjct: 408 EELDVAVQNSLLSLYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVR 467
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
++E GV D VT VL A S G+L+ G ++ F++ A+
Sbjct: 468 EMELCGVSPDAVTFQSVLHACSHEGSLERGWAS-FVSMAV 506
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 34/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
MIS Y+Q+GR +EA+E + +ES V + VT V V+ A +G G I +++
Sbjct: 113 MISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGRQVHGRLVSL 172
Query: 54 -IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
+E D++ S + Y G + A RD + M+S YS+ G + +E
Sbjct: 173 GLETDVAVGS--ALVQLYVKCGNLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIE 230
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
+ +++ V + VT VL A S L G+ +++ + T+++ +Y
Sbjct: 231 AY---DAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETSLLSLYI 287
Query: 152 K 152
K
Sbjct: 288 K 288
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
RD V AMI+ Y+QAGR EAL + + S + + VT VL+A S G + G+
Sbjct: 340 RDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGR 397
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAW----ILAKE 51
MISGY Q G +EA+E F K+ G D T V VL+A S G W I+
Sbjct: 180 MISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTG 239
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARDP------VSCKAMISGYSQAGRFNEALEPF 105
+++ + L++ SL + SR GR R D VS AMISGY G EA+E F
Sbjct: 240 IRMNVVLAT-SLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVF 298
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ GV + VT V VL+A + G ++ G+
Sbjct: 299 HRMKACGVVPNRVTYVAVLSACAHAGLINEGR 330
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R ++ +MISGY Q G +EA+E F K+ G D T V VL+A S G+LD G
Sbjct: 172 RSIIAWNSMISGYEQNGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWL 231
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ N+ L T+++ M+++
Sbjct: 232 HECIVGTGIRMNVVLATSLVNMFSR 256
>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGY G N ALE F L + + VT+ VL A +G A L KEL +
Sbjct: 322 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 381
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S Y S+ YA GR+ LA +D V +MI+ SQ G+ EA++ F
Sbjct: 382 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 441
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D V++ L+A + AL +GK S++F +A+I+MY+K
Sbjct: 442 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 499
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M++GY + G ++ A F ++ + + VT VL+ + +L
Sbjct: 219 MLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSG 278
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+E+D + + Y + +AR D V C AMISGY G N ALE
Sbjct: 279 LEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEI 338
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F L + + VT+ VL A +G AL GK + ++ +AI++MYAK
Sbjct: 339 FRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAK 398
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
MISGY++ + E++E ++E V VT+++VL+A S L K +
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK 266
Query: 55 -------------------ELDLSSYSLSSKTSR-----------YAHSGRIRLAR---- 80
E+D++ S +R Y G ++LAR
Sbjct: 267 TEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S MI GY +AG FNE+LE F +++S G+ DE TMV VL A + G+L+
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K+++ + A+I+MY K
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFK 415
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY +AG FNE+LE F +++S G+ DE TMV VLTA + G+ + + ++ +D +
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 61 YS-----------------LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
S K + H RD + AM+ G + G+ EA++
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD---QRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ + + D++T + VL+A + G +D
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVD 486
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-SSGPGAWILAKELQ---IEL 56
MI G+S+ E + + + GV D T +L GA K+L ++
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164
Query: 57 DLSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L S Y ++ Y+ G + +AR D S MISGY++ + E++E
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E V VT+++VL+A S D K
Sbjct: 225 VEMERNLVSPTSVTLLLVLSACSKVKDKDLCK 256
>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Vitis vinifera]
Length = 853
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGY G N ALE F L + + VT+ VL A +G A L KEL +
Sbjct: 421 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 480
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S Y S+ YA GR+ LA +D V +MI+ SQ G+ EA++ F
Sbjct: 481 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D V++ L+A + AL +GK S++F +A+I+MY+K
Sbjct: 541 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY Q G +EA F ++ S + D +T L S KE+ + +
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SL S+ Y + +AR D V C AMISGY G N ALE F
Sbjct: 380 VSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 439
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
L + + VT+ VL A +G AL GK + ++ +AI++MYAK
Sbjct: 440 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAK 497
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++GY + G ++ A F ++ + + VT VL+ + G+ + +
Sbjct: 219 MLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSG 278
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ S ++ + YA G + AR D V+ MISGY Q G +EA F
Sbjct: 279 LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFH 338
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ S + D +T L S L GK ++FL +A+I++Y K
Sbjct: 339 EMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFK 396
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
MISGY++ + E++E ++E V VT+++VL+A S L K +
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK 266
Query: 55 -------------------ELDLSSYSLSSKTSR-----------YAHSGRIRLAR---- 80
E+D++ S +R Y G ++LAR
Sbjct: 267 TEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S MI GY +AG FNE+LE F +++S G+ DE TMV VL A + G+L+
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K+++ + A+I+MY K
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFK 415
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY +AG FNE+LE F +++S G+ DE TMV VLTA + G+ + + ++ +D +
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 61 YS-----------------LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
S K + H RD + AM+ G + G+ EA++
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD---QRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ + + D++T + VL+A + G +D
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVD 486
Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-SSGPGAWILAKELQ---IEL 56
MI G+S+ E + + + GV D T +L GA K+L ++
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164
Query: 57 DLSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L S Y ++ Y+ G + +AR D S MISGY++ + E++E
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E V VT+++VL+A S D K
Sbjct: 225 VEMERNLVSPTSVTLLLVLSACSKVKDKDLCK 256
>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
Length = 582
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
++SGY+ R + + F ++ LGV + VTM+ ++ PG L + +
Sbjct: 84 LLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFG 143
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFG 106
LD+ S + + Y SG I R P ++ AMI+GY+Q G N LE +
Sbjct: 144 LDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYK 203
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ES G D +T+V VL++ + GAL GK SN FL A++ MYA+
Sbjct: 204 EMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYAR 261
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
M+ Y Q + EAL F K+++ GV +D++ + VL+A +++L +
Sbjct: 142 MLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSD 201
Query: 52 LQIELDLSS------------------------YSLSSKTSR---YAHSGRIRLAR---- 80
+ I LSS L S T+ YA + + +AR
Sbjct: 202 ILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFD 261
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD- 134
D VS AMISGY+ + + NEAL F ++ G+ DEVTM+ V++A + G+LD
Sbjct: 262 GMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDK 321
Query: 135 ------FGKSN-----IFLTTAIIEMYAK 152
F K+N + + A+I+M+AK
Sbjct: 322 AKWIHAFIKNNGLNKILHICNALIDMFAK 350
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY+ + + NEAL F ++ G+ DEVTM+ V++A + G+ WI A
Sbjct: 274 MISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNG 333
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ +A G I LA ++ ++ +MI+ ++ G AL F
Sbjct: 334 LNKILHICNALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFE 393
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
++ + GV +EVT + +L A G + G+S L +++++ Y
Sbjct: 394 QMRNEGVEPNEVTFLNLLYACCHAGLVHEGRS---LFSSMVQQY 434
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS M+ Y Q + EAL F K+++ GV +D++ + VL+A L GKS
Sbjct: 134 RDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLRTGKSI 193
Query: 139 -----------NIFLTTAIIEMYA 151
N L++A+I +YA
Sbjct: 194 HSYMLVSDILINAHLSSALINLYA 217
>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-------ELQ 53
M+ GY Q G +A+ F K+ G+ VT++ L A + G K +L
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEP 104
+ D+S ++S S Y+ R+ +A D VS AMI GY+Q GR +EAL
Sbjct: 380 LGSDISV--MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNC 437
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++SLG+ D TMV V+ A + K NIF+TTA+++MY+K
Sbjct: 438 FSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSK 497
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MI GY+Q GR +EAL F +++SLG+ D TMV V+ A + WI ++
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ Y+ G I +AR ++ AMI GY G AL+ F
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFD 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ V +++T + V++A S G +D G
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEG 570
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+SQ G +ALE +++ G D +T+V VL A++ G ++ K +
Sbjct: 219 IIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG 278
Query: 54 ----IEL-----DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+ + D+ S S +T+R G + + VS +M+ GY Q G +A+
Sbjct: 279 FAKLVNISTALADMYSKCGSVETARLIFDGMDQ--KTVVSWNSMMDGYVQNGEPEKAIAV 336
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F K+ G+ VT++ L A + G L+ GK S+I + ++I MY+K
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSK 396
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
RD VS +I+G+SQ G +ALE +++ G D +T+V VL A++ G L GKS
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270
Query: 140 ------------IFLTTAIIEMYAK 152
+ ++TA+ +MY+K
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSK 295
>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 821
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 86/180 (47%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-------ELQ 53
M+ GY Q G +A+ F K+ G+ VT++ L A + G K +L
Sbjct: 320 MMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLN 379
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEP 104
+ D+S ++S S Y+ R+ +A D VS AMI GY+Q GR +EAL
Sbjct: 380 LGSDISV--MNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNC 437
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++SLG+ D TMV V+ A + K NIF+TTA+++MY+K
Sbjct: 438 FSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSK 497
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MI GY+Q GR +EAL F +++SLG+ D TMV V+ A + WI ++
Sbjct: 421 MILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ Y+ G I +AR ++ AMI GY G AL+ F
Sbjct: 481 LDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFD 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ V +++T + V++A S G +D G
Sbjct: 541 KMKKGAVEPNDITYLSVISACSHSGLVDEG 570
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+SQ G +ALE +++ G D +T+V VL A++ G ++ K +
Sbjct: 219 IIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAG 278
Query: 54 ----IEL-----DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+ + D+ S S +T+R G + + VS +M+ GY Q G +A+
Sbjct: 279 FAKLVNISTALADMYSKCGSVETARLIFDGMDQ--KTVVSWNSMMDGYVQNGEPEKAIAV 336
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F K+ G+ VT++ L A + G L+ GK S+I + ++I MY+K
Sbjct: 337 FEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSK 396
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
RD VS +I+G+SQ G +ALE +++ G D +T+V VL A++ G L GKS
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270
Query: 140 ------------IFLTTAIIEMYAK 152
+ ++TA+ +MY+K
Sbjct: 271 HGYAIRAGFAKLVNISTALADMYSK 295
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
+I G + AGR NEA+E F ++ G D+ TMV V +A G G LA +L +
Sbjct: 188 IIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAK 247
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E ++S Y GR+ A R+ VS +MI+GY+ G EALE
Sbjct: 248 TEEKSDVMMMNSLIDMYGKCGRMDFAIQVFEEMPQRNVVSWSSMITGYAANGNTLEALEC 307
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ GV +++T V VL+A G ++ GK+
Sbjct: 308 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKA 341
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 28/156 (17%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDL--SSYSLSSKTSRYAHSGRIRLA 79
V D T+ +V+ A+ + L K+L + L + S + Y +G + A
Sbjct: 111 NVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVAVRLGFVGDEFCESGFITLYCKAGELENA 170
Query: 80 RDPV---------SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R+ S A+I G + AGR NEA+E F ++ G D+ TMV V +A G
Sbjct: 171 RNVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFMEMRRSGFEPDDFTMVSVTSACGGL 230
Query: 131 GALDFG--------------KSNIFLTTAIIEMYAK 152
G L+ KS++ + ++I+MY K
Sbjct: 231 GDLNLAFQLHKCVLQAKTEEKSDVMMMNSLIDMYGK 266
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + E F ++ V +++TM+ ++ + GA L K L + +
Sbjct: 203 MIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNG 262
Query: 61 YSLS-----SKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S + Y G IR AR D ++ AMIS Y+QA + A + F
Sbjct: 263 FGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFV 322
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV +E+TMV +L+ + GALD GK ++ L TA+I+MYAK
Sbjct: 323 QMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAK 380
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+QA + A + F ++ GV +E+TMV +L+ + GA + K +D
Sbjct: 304 MISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQG 363
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I + RD + M++GY G +AL+ F
Sbjct: 364 VEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFT 423
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E+LGV +++T + L A S G + GK
Sbjct: 424 EMETLGVKPNDITFIGALHACSHAGLVVEGK 454
Score = 35.4 bits (80), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AMI+GY + E F ++ V +++TM+ ++ + GA+ GK
Sbjct: 195 RSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRL 254
Query: 139 -----------NIFLTTAIIEMYAK 152
++ L TA+++MY K
Sbjct: 255 HAYILRNGFGMSLALATALVDMYGK 279
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY G +AL+ F ++E+LGV +++T + L A S G + K L E +
Sbjct: 405 MMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL-FEKMIHD 463
Query: 61 YSLSSKTSRY 70
+ L K Y
Sbjct: 464 FGLVPKVEHY 473
>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 876
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP------GAWILAKELQI 54
M++GY+QAG EA + F +L G+ +E T ++ A + P G A +++
Sbjct: 474 MLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKL 533
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L+ + SS + YA G I A RD VS +MISGY+Q G+ +ALE F
Sbjct: 534 RLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVF 593
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ + D +T + V++A + G + G++
Sbjct: 594 EEMQKRNLEVDAITFIGVISACAHAGLVGKGQN 626
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY Q G ++A+ F + GV + T +LT + E+ E+ ++
Sbjct: 377 MISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHA----VFISEIHAEVIKTN 432
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y SS + G I A +D ++ AM++GY+QAG EA + F
Sbjct: 433 YEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFH 492
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGA 132
+L G+ +E T ++ A + P A
Sbjct: 493 QLTREGIKPNEFTFCSIINACTAPTA 518
Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 16/147 (10%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS--YS 62
YS+ + EAL F L G+ D TM VL+ +G + +++ + +
Sbjct: 77 YSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHH 136
Query: 63 LS---SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL-EPFGKLE 109
LS S Y +G +R RD VS ++++GYS RFN+ + E F ++
Sbjct: 137 LSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW-NRFNDQVWELFCLMQ 195
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG 136
G D T+ V+AA + GA+ G
Sbjct: 196 VEGYRPDYYTVSTVIAALANQGAVAIG 222
>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like, partial [Vitis vinifera]
Length = 825
Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--GAWILAKELQ-IELD 57
+I GYSQ +F EA E F +++ G D VT V +L+ +G G I + Q I+L
Sbjct: 120 LIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLG 179
Query: 58 LSSYSLSSKT--SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S + T Y S R+ LA D VS AMI+GYS+ G +A+ F
Sbjct: 180 YDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFV 239
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ G+ E T VL A+ G + G+ N+F++ A+++ Y+K
Sbjct: 240 EMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 297
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G+ A + F +L+ + +L+ +S W + +++ + +++
Sbjct: 322 IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT 381
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S YA G+ A R V AMIS Y Q G + E L+ F
Sbjct: 382 ADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFN 441
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ V D+ T +L AS+ +L GK SN+F +A++++YAK
Sbjct: 442 KMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAK 499
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G + E L+ F K+ V D+ T +L AS+ + L K+L + S
Sbjct: 423 MISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG 482
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S S+ YA G I+ A R+ VS AMIS Y+Q G L+ F
Sbjct: 483 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFK 542
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D V+ + VL+A S G ++ G
Sbjct: 543 EMVLSGLQPDSVSFLGVLSACSHSGLVEEG 572
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
R V+ +I GYSQ +F EA E F +++ G D VT V +L+ +G
Sbjct: 112 RTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNG 161
>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 742
Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 60/211 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------------GPGA 45
+ISGYS+AGR EA++ F + S G+ DEVT++ +L+A G
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKR 267
Query: 46 WILAKELQIELDLSSYSLSSKTSR-----------------------YAHSGRIRLAR-- 80
+++ +L + L + Y+ T R Y G + +AR
Sbjct: 268 MLMSDKLVVAL-IDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSL 326
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
D ++ ++I+GY GR EAL F K+ G+ D TMV +L AS+ GAL
Sbjct: 327 FDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGAL 386
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
G++ +++L TA+++MY K
Sbjct: 387 PQGRALHACIEQRLVERDVYLGTALLDMYMK 417
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GY GR EAL F K+ G+ D TMV +LTAS+ GA + L
Sbjct: 341 LITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTASASLGALPQGRALHACIEQRL 400
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+E D+ Y ++ Y GR+ A RD + AMI G + G ALE
Sbjct: 401 VERDV--YLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEH 458
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ G H + VT + VL A S LD G+
Sbjct: 459 FFWMKCDGFHANSVTYIAVLTACSHSCLLDEGR 491
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ V+ +ISGYS+AGR EA++ F + S G+ DEVT++ +L+A L+FG S
Sbjct: 200 RNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSL 259
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 260 HMLVGDKRMLMSDKLVVALIDMYAK 284
>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 703
Score = 69.3 bits (168), Expect = 5e-10, Method: Composition-based stats.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI +++ GR +EA + F ++++ G D + + +L A + GA K++
Sbjct: 302 MIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSG 361
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+E+D+ + + Y+ SG I AR + VS AMISG +Q G +ALE
Sbjct: 362 LEVDVRVGT--ALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEV 419
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
F ++ + GV D VT V VL+A S G +D G+S T +
Sbjct: 420 FRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461
Score = 50.4 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+GY + +A+ F ++ GV + T +++L A + A KE+
Sbjct: 100 MIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGG 159
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+E D+ + + Y G I AR D +S MI Y+Q+G EA
Sbjct: 160 LESDVRVGT--ALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRL 217
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E G + +T V +L A + GAL + K ++ + TA+++MYAK
Sbjct: 218 MLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAK 277
Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKE-----LQIELDLSSYSLSSKTSRYAHSGRIRLA 79
G+ TD V VL + AK+ ++ ++ +++ +++ Y GR++ A
Sbjct: 23 GLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEA 82
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R S AMI+GY + +A+ F ++ GV + T +++L A +
Sbjct: 83 RCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASL 142
Query: 131 GALDFGK------------SNIFLTTAIIEMYAK 152
AL +GK S++ + TA++ MY K
Sbjct: 143 SALKWGKEVHACIRHGGLESDVRVGTALLRMYGK 176
>gi|297738075|emb|CBI27276.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 70/142 (49%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ F E L+ F ++S G+ DE +V +L A + GA + + LD
Sbjct: 102 MISGYAKNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLG 161
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS + S YA G + +A RD + AMISG + G + AL F
Sbjct: 162 HPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFS 221
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
++E GV D++T + + AS+
Sbjct: 222 EMEKAGVKPDDITFIAIFTASA 243
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-----KELQIE 55
MI + G+ ++ + ++ G++ D T+ VL A +G + L + +++
Sbjct: 1 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLG 60
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y+ G +R AR VS MISGY++ F E L+ F
Sbjct: 61 FWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFR 120
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++S G+ DE +V +L A + GA++ G ++ L+T +I+MYAK
Sbjct: 121 LMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAK 178
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 16/165 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
+I G + AGR NEA+E F ++ G+ D+ TMV V + G G LA +L +
Sbjct: 189 IIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAK 248
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E L+S Y GR+ LA R+ VS +MI GY+ G EALE
Sbjct: 249 TEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALEC 308
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEM 149
F ++ GV +++T V VL+A G ++ GK+ + + E+
Sbjct: 309 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFEL 353
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQ---IELDL--SSYSLSSKTSRYAHSGRIRLARDPV 83
D ++ +V+ A+ + L KEL + L + S + Y +G AR
Sbjct: 116 DRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVF 175
Query: 84 ---------SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
S A+I G + AGR NEA+E F ++ G+ D+ TMV V A+ G G L
Sbjct: 176 DENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLS 235
Query: 135 FG--------------KSNIFLTTAIIEMYAK 152
KS+I + ++I+MY K
Sbjct: 236 LAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGK 267
>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY +G F EA+ F KL +G+ D ++V VL A + G WI
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S Y G + A +D VS MI GY+ G +AL+ F
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+++S + D TMV VL+A + GALD G SN L TA+I+MY+K
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSK 363
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G F++A+ +G + G + T+ VL A A++L + L L
Sbjct: 85 MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC--------ARKLDVRLGLKI 136
Query: 61 YSLSSKTSRYAHSGRIRLA-----------------------RDPVSCKAMISGYSQAGR 97
+SL K Y H ++ + ++ VS A+I+GY +G
Sbjct: 137 HSLLVKAG-YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTA 145
F EA+ F KL +G+ D ++V VLAA + G G+ N+F+ T+
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS 255
Query: 146 IIEMYAK 152
+++MY K
Sbjct: 256 LLDMYVK 262
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G +AL+ F +++S + D TMV VL+A + GA LDL
Sbjct: 287 MIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA----------LDLGI 336
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
++ S R +PV A+I YS+ G +A E F
Sbjct: 337 WASSLMD-------RNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374
>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
Length = 818
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGY G N ALE F L + + VT+ VL A +G A L KEL +
Sbjct: 421 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 480
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S Y S+ YA G++ LA +D V +MI+ SQ G+ EA++ F
Sbjct: 481 HGGSCYVGSAIMDMYAKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D V++ L+A + AL +GK S++F +A+I+MY+K
Sbjct: 541 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 598
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY Q G +EA F ++ S G+ D +T L S KE+ + +
Sbjct: 320 MISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNG 379
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SL S+ Y + +A D V C AMISGY G N ALE F
Sbjct: 380 VSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFR 439
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
L + + VT+ VL A +G AL GK + ++ +AI++MYAK
Sbjct: 440 WLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAK 497
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++GY + G ++ A F ++ + + VT VL+ + G+ + +
Sbjct: 219 MLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSG 278
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ S ++ + YA G + AR D V+ MISGY Q G +EA F
Sbjct: 279 LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFH 338
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ S G+ D +T L S L GK ++FL +A+I++Y K
Sbjct: 339 EMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFK 396
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY Q G +AL +G++E G+ +E+TM VL A S A K++
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Query: 61 YSL-----SSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S+ ++ YA G R ARD +S AMISG SQ G EALE F
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G D VT V +L+A S G ++ G
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q+G ++AL+ F + G+ E T V V+ A S GA K+ L++
Sbjct: 281 MITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y +++ YA I AR D V +MI GY Q G +AL +G
Sbjct: 341 FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYG 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E G+ +E+TM VL A S AL+ GK
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGK 431
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ ++ AMI+GY+Q+G ++AL+ F + G+ E T V V+ A S GA GK
Sbjct: 273 KNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332
Query: 138 ----------SNIFLTTAIIEMYAK 152
S I++ TA+++MYAK
Sbjct: 333 HDYLLKLGFESQIYVMTALVDMYAK 357
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI GY Q G +AL +G++E G+ +E+TM VL A S G I A+ ++
Sbjct: 382 MIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKYG 441
Query: 56 LDLSSYSLSSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L S+ ++ YA G R ARD +S AMISG SQ G EALE F
Sbjct: 442 FGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFE 501
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G D VT V +L+A S G ++ G
Sbjct: 502 EMQLEGTKPDYVTFVNILSACSHMGLVERG 531
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+G +Q+G ++AL+ F + G+ E T V V+ A S GA K+ L++
Sbjct: 281 MITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLG 340
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y +++ YA I AR D V +MI GY Q G +AL +G
Sbjct: 341 FESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYG 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E G+ +E+TM VL A S AL+ GK
Sbjct: 401 RMEMEGILPNELTMASVLKACSSLAALEQGK 431
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ ++ AMI+G +Q+G ++AL+ F + G+ E T V V+ A S GA GK
Sbjct: 273 KNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQV 332
Query: 138 ----------SNIFLTTAIIEMYAK 152
S I++ TA+++MYAK
Sbjct: 333 HDYLLKLGFESQIYVMTALVDMYAK 357
>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Cucumis sativus]
Length = 688
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY +G F EA+ F KL +G+ D ++V VL A + G WI
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S Y G + A +D VS MI GY+ G +AL+ F
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+++S + D TMV VL+A + GALD G SN L TA+I+MY+K
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSK 363
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 44/187 (23%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G F++A+ +G + G + T+ VL A A++L + L L
Sbjct: 85 MIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKAC--------ARKLDVRLGLKI 136
Query: 61 YSLSSKTSRYAHSGRIRLA-----------------------RDPVSCKAMISGYSQAGR 97
+SL K Y H ++ + ++ VS A+I+GY +G
Sbjct: 137 HSLLVKAG-YDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGH 195
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTA 145
F EA+ F KL +G+ D ++V VLAA + G G+ N+F+ T+
Sbjct: 196 FREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATS 255
Query: 146 IIEMYAK 152
+++MY K
Sbjct: 256 LLDMYVK 262
Score = 38.9 bits (89), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G +AL+ F +++S + D TMV VL+A + GA LDL
Sbjct: 287 MIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGA----------LDLGI 336
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
++ S R +PV A+I YS+ G +A E F
Sbjct: 337 WASSLMD-------RNEFLSNPVLGTALIDMYSKCGSVTQAWEIF 374
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ RF++A+E F +++S+GV +E MV +L A Q + + +
Sbjct: 178 LISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGR----CFDPYCQSKFEFNV 233
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+S YA G +R AR + VS ++I+GYSQ G EA+ F + L
Sbjct: 234 ILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDL 293
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G+ D+VT V+ AS G G++ + + A++ MYAK
Sbjct: 294 GIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAK 346
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GYS + ++AL + ++ G D T VL A SG G+ + ++
Sbjct: 77 MIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG 136
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLARD-----PVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y + Y G + R+ D V+ ++ISG+ RF++A+E F
Sbjct: 137 FEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFR 196
Query: 107 KLESLGVHTDEVTMVVVLAASS---GPGALDFGKSNIFLTTAIIEMYAK 152
+++S+GV +E MV +L A P + N+ L T++I+MYAK
Sbjct: 197 EMQSIGVKPNETIMVDLLVACGRCFDPYCQSKFEFNVILATSLIDMYAK 245
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 95/177 (53%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y+ AG + A E F ++ ++G + +T +++T G LA+++ E+ + +
Sbjct: 197 MVGAYAAAGELDVAREMFDRMPAIGRNI--ITWNLMVTGFGRHGLLPLARKMFDEMPIRN 254
Query: 61 -YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ YA +G + +AR D VS MISGY+QAGR+ + LE F ++S
Sbjct: 255 IVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYAQAGRYAQTLELFRTMQS 314
Query: 111 LG-VHTDEVTMVVVLAASSGPGALDFGK-SNIF-------------LTTAIIEMYAK 152
G + +EVTMV VL+A + AL+ G+ +++F L A+I+MYAK
Sbjct: 315 HGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEFNLGAALIDMYAK 371
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 80/155 (51%), Gaps = 19/155 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASS-------GPGAWILAKEL 52
MISGY+QAGR+ + LE F ++S G + +EVTMV VL+A + G A + +
Sbjct: 292 MISGYAQAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKH 351
Query: 53 QIELDLSSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++ LD + ++L ++ YA GR LA ++ + A+I+G + +
Sbjct: 352 KMVLD-NEFNLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCI 410
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ F +++ D++T V VL A + G +D G+
Sbjct: 411 DVFEQMKMSEEKPDDITFVSVLTACAHAGLVDEGR 445
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G+ + GR +EA++ F + GV TD +T+V V++A + G G W+ L+
Sbjct: 175 LIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQR 234
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ LA R VS +MI G++ GR +A+E F
Sbjct: 235 LERNVRVANSLIDMYARCGQVNLAAQVFRSIRKRTVVSWNSMIVGFAANGRCTDAIELFE 294
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ G D VT+ VL A S G + G L T + A+M
Sbjct: 295 EMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARM 341
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D VS A+I G+ + GR +EA++ F + GV TD +T+V V++A + GAL G
Sbjct: 168 DKVSWTALIDGFVKNGRHDEAIDCFRAMLLDGVETDYITLVAVVSACAEVGALGLGMWVH 227
Query: 137 --------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 228 RLVLRQRLERNVRVANSLIDMYAR 251
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 26/179 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M+ GY Q+GR+ E LE FG + S + D + L A + G I++ ++
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKG 160
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + + SS S G+I A +D V ++I GY QAG F+ A + F
Sbjct: 161 MEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFF 220
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAKM 153
++ G+ +TM ++ A G G L GK ++I + T+ ++MY+KM
Sbjct: 221 EMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKM 279
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG + G E+ + F +L D T+V +L S + K L I
Sbjct: 303 MISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSF 362
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
S+ LS+ Y+ G ++ A R+ ++ AM+ G +Q G +AL F +
Sbjct: 363 ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQ 422
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ + VT V ++ + + G+L G+S +I TA+++MYAK
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAK 479
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
C AM+ GY Q+GR+ E LE FG + S + D + L A + +LD+
Sbjct: 98 CNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACA--SSLDY 146
>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 708
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI+GY Q G +AL + +++ G+ +E+TM VL A S A+ I A+ ++
Sbjct: 385 MIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYG 444
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L L S+ ++ YA G + R+ RD +S AMISG SQ G EALE F
Sbjct: 445 LGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFE 504
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ D+VT V VL+A S G +D G
Sbjct: 505 EMRQQDTKPDDVTFVNVLSACSHMGLVDSG 534
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q+G ++AL+ F ++ G++ E T+V VL A S A K+ L++
Sbjct: 284 MITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLG 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y +++ YA SG AR D V +MI+GY Q G +AL +
Sbjct: 344 FESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDALSLYC 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ +E+TM VL A S A D G+ + + +A+ MYAK
Sbjct: 404 RMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKYGLGLEVTIGSALSTMYAK 461
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MISGY+ EA E F + +E VL+A + P G I ++
Sbjct: 183 MISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTG 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L++ + YA G + + ++ ++ AMI+GY+Q+G ++AL+ F
Sbjct: 243 LLVFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFS 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G++ E T+V VL A S A++ GK S +++ TA+++MYAK
Sbjct: 303 RMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAK 360
>gi|302809912|ref|XP_002986648.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
gi|300145536|gb|EFJ12211.1| hypothetical protein SELMODRAFT_41458 [Selaginella moellendorffii]
Length = 623
Score = 68.9 bits (167), Expect = 6e-10, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI Y+Q GR AL FG ++ GV D +T++ VL A +G G ++ ++L
Sbjct: 379 MIGAYAQHGRARLALAVFGGMQQHGVKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQ 438
Query: 58 LSSYSL-SSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEPF 105
L S +L ++ + YA SGR+ AR+ +S AM++ Y+ G EA F
Sbjct: 439 LRSAALDNAAVNMYAKSGRVAAAREVFEAMDAQRRTIMSWSAMVAAYAGVGHAEEAFRLF 498
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ GV + VT++ +L A S G L G S
Sbjct: 499 HAMQREGVRPNHVTLISILGACSHAGMLQAGCS 531
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA----------SSGPGAWILAK 50
M++GY+ AGR +EA+ ++E G H D VT V L A S G +L
Sbjct: 271 MMAGYANAGRGDEAVVLLRQMEQHGFHPDRVTYVNFLNACDKAEMVEHGRSIHGRIVLQS 330
Query: 51 ELQIELDLSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFN 99
L L + ++ S S YA G I A R+ VS AMI Y+Q GR
Sbjct: 331 RDTPALSLRTNAVVGCSLCSMYARCGSIDEAAAVFAGMEQRNVVSWNAMIGAYAQHGRAR 390
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPG-----------ALDFGKSNIFLTTAIIE 148
AL FG ++ GV D +T++ VL A +G G +L + L A +
Sbjct: 391 LALAVFGGMQQHGVKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQLRSAALDNAAVN 450
Query: 149 MYAK 152
MYAK
Sbjct: 451 MYAK 454
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
M+SGYSQ G + L F + GV + VT++ V+ A S A E +E +++
Sbjct: 176 MLSGYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQLRQADECGVEEEVAV 235
Query: 60 ---SYSLSSKTSRYAHSGRI----RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
++ +K + I ARD +S M++GY+ AGR +EA+ ++E G
Sbjct: 236 RNACINMHAKRGDVDRAAAIFASMVAARDVISWNVMMAGYANAGRGDEAVVLLRQMEQHG 295
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS 138
H D VT V L A ++ G+S
Sbjct: 296 FHPDRVTYVNFLNACDKAEMVEHGRS 321
Score = 35.4 bits (80), Expect = 7.7, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 64 SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S + YA G I AR + VS AM+SGYSQ G + L F + GV
Sbjct: 143 TSLITMYAKCGSIEDARLVFDSMAERNEVSWNAMLSGYSQHGHGAQLLHLFRAMLQGGVQ 202
Query: 115 TDEVTMVVVLAASSGPGALDFG-----KSNIFLTTAIIEMYAK 152
+ VT++ V+ A S L + + + A I M+AK
Sbjct: 203 PNAVTLLPVVNACSSLAQLRQADECGVEEEVAVRNACINMHAK 245
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
+ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+ L + + +D
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRG 280
Query: 59 --SSYSLSSKT-SRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ SL++ YA SG I A D C +I+G + G EAL F
Sbjct: 281 MNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFN 340
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV ++VT + +L+A S G +D GK
Sbjct: 341 RMVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS +ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+L+ G+
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI 272
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAK 297
Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G + G EAL F ++ GV ++VT + +L+A S G W+ DL
Sbjct: 322 IIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG-WV---------DLGK 371
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S S+Y I + C MI +AG+ EA E ++S+ +
Sbjct: 372 RLFNSMRSKYGIHPNI----EHYGC--MIDLLGRAGKLREADEV---IKSMPFKANAAIW 422
Query: 121 VVVLAASSGPGALDFGK 137
+LAAS+ L+ G+
Sbjct: 423 GSLLAASNVHHDLELGE 439
>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
Length = 695
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 33/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+ Y+ G F EAL F ++ G + +T+ V + + G AWI ++
Sbjct: 277 MIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRARAWIREED 336
Query: 52 LQ--------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
LQ +E+ + ++ + R RD V+ MI+GYSQ GR +E+LE
Sbjct: 337 LQNVIVHTALMEMYVKCRAIDEARHEFDRMPR----RDVVAWSTMIAGYSQNGRPHESLE 392
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++++ +EVT+V VL+A + G+ + G+ +L +A+I+MY
Sbjct: 393 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQTLPLTSYLGSALIDMYT 452
Query: 152 K 152
K
Sbjct: 453 K 453
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R S +MI+ Y+ G F EAL F ++ G + +T+ V + + G LD G+
Sbjct: 269 RTSASWNSMIACYAHGGEFREALTLFDQMLREGASPNAITITTVFSICAKTGDLDTGRRA 328
Query: 138 ---------SNIFLTTAIIEMYAK 152
N+ + TA++EMY K
Sbjct: 329 RAWIREEDLQNVIVHTALMEMYVK 352
>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 849
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI GY Q G A+E F K+ V VT++ L A + G ++ Q+E
Sbjct: 348 MIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLE 407
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++S S Y+ R+ +A + VS AMI GY+Q GR NEA++ F
Sbjct: 408 LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFC 467
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K++ + D TMV V+ A + L K N+F+ TA+++MYAK
Sbjct: 468 KMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAK 525
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA----SSGPGA-WILAKELQIE 55
MI GY+Q GR NEA++ F K++ + D TMV V+ A S P A WI ++
Sbjct: 449 MILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTC 508
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ YA G + AR + AMI GY G ALE F
Sbjct: 509 LDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFE 568
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ + +EVT + VL+A S G ++ G
Sbjct: 569 KMKKEVIKPNEVTFLCVLSACSHSGLVEEG 598
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ GY++ ++A+ F ++ GV +L KE+ +L ++
Sbjct: 146 MLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNG 205
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ + YA + A RD V +ISGY+Q G ALE
Sbjct: 206 FASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVL 265
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G D +T+V +L A + G+L G+ S + ++TA+++MY+K
Sbjct: 266 RMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSK 323
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISGY+Q G ALE +++ G D +T+V +L A + G+ + + + +
Sbjct: 247 IISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAG 306
Query: 58 LSSY-----SLSSKTSRYAHSGRIRLARDP------VSCKAMISGYSQAGRFNEALEPFG 106
S+ +L S+ G RL D VS +MI GY Q G A+E F
Sbjct: 307 FESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQ 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ V VT++ L A + G ++ G+ S++ + ++I MY+K
Sbjct: 367 KMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSK 424
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 24/171 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILA----KE 51
M+ GY+Q GR +EAL F ++ GV DEV++V+ L+A ++ G W+ +
Sbjct: 225 MMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGG 284
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA------------RDPVSCKAMISGYSQAGRFN 99
+ + L++ ++ Y G + A RD V+ AMI+GY+ GR
Sbjct: 285 RRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSR 344
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
EALE FG+L + G+ ++T + VL A S G +D G++ L A+ E Y
Sbjct: 345 EALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRA---LFAAMEEEY 392
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 25/116 (21%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S+++ S YA G++ AR D V AM+ GY+Q GR +EAL F ++ G
Sbjct: 190 SVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSG 249
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS----------------NIFLTTAIIEMYAK 152
V DEV++V+ L+A + G + G+ N + TA+++MY K
Sbjct: 250 VEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYK 305
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----W--ILAKELQ 53
MI GY Q GRF +ALE F ++ V DE TMV V+TA + GA W I L
Sbjct: 264 MIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLG 323
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I++D+ + ++ Y+ G I A RD + A+I G + GR EA++
Sbjct: 324 IKMDV--FVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDM 381
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ DEVT V VL A + G +D G+
Sbjct: 382 FYRMLRALQTPDEVTFVGVLTACTHAGLVDKGR 414
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 66/129 (51%), Gaps = 24/129 (18%)
Query: 45 AWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQA 95
AW+L + +Q+ S S +S S SG++ ARD ++ AMI GY Q
Sbjct: 215 AWVLFEGMQMR---SMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQV 271
Query: 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLT 143
GRF +ALE F ++ V DE TMV V+ A + GAL+ G K ++F+
Sbjct: 272 GRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVG 331
Query: 144 TAIIEMYAK 152
A+I+MY+K
Sbjct: 332 NALIDMYSK 340
>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
Length = 1026
Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MISG+++ G EA+E F + G+ + T+ VL+A + G + A+ L+
Sbjct: 298 MISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQG 357
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y SS S YA G++ A+ + V AM+ GY Q G NE +E F
Sbjct: 358 LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFF 417
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++S G + D+ T +L+A + LD G SN+F+ A+++MYAK
Sbjct: 418 NMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNKFASNLFVGNALVDMYAK 475
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M+ GY Q G NE +E F ++S G + D+ T +L+A + L +L I+
Sbjct: 399 MLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKNK 458
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S + ++ YA SG + AR D VS +I GY Q EA F
Sbjct: 459 FASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFR 518
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ LG+ DEV++ +L+A + L+ GK + ++ +++I+MYAK
Sbjct: 519 RMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAK 576
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY + G EA++ F ++E +G D+V V V+ A G LD +S
Sbjct: 232 MIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLG----------RLDNAS 281
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S +R + V+ MISG+++ G EA+E F + G+ + T+
Sbjct: 282 DLFSRMPNR-----------NVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTL 330
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + ALDFG SN+++ ++++ MYAK
Sbjct: 331 GSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAK 374
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 15/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
++S +S+ G + ++ FG L + GV +E T +VL++ + G + +++
Sbjct: 131 ILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMG 190
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ SY + YA + AR D VS +MI GY + G EA++ F
Sbjct: 191 FESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQ 250
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
++E +G D+V V V+ A G LD S++F
Sbjct: 251 EMEKVGQEPDQVAFVTVINAYVDLGRLD-NASDLF 284
>gi|255551991|ref|XP_002517040.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543675|gb|EEF45203.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----AWI---LAKEL 52
MI GY + G + ++ F K+ S+GV DE+T+V VL A+ G W+ +
Sbjct: 167 MIDGYVRNGFPVDGIKCFKKMRSMGVKIDEITVVSVLCAAGMAGDVWFGRWVHGFYVESG 226
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
+++ D+ Y SS Y G A ++ V A+I+GY Q RF +AL
Sbjct: 227 RVKWDV--YIGSSLLDMYCKCGYCDDACKLFNEMPVKNIVCWSALIAGYVQCNRFKDALL 284
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
F + V ++ T+ VL AS+ GALD G+ N L TA+I+MYA
Sbjct: 285 LFQDMLLTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNSLEMNSILGTALIDMYA 344
Query: 152 K 152
K
Sbjct: 345 K 345
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 89/179 (49%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
+ISG+S + + ++L + + +G+ D T ++L + + P I A ++
Sbjct: 67 IISGFSISFQPQKSLLYYTIMRRIGILPDNQTYNLLLKSYPQLENRKPFD-IYAHIVKYG 125
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + +S + +++ G ++ A R+ V+ AMI GY + G + ++ F
Sbjct: 126 LDFDNSVTNSLITAFSNCGCVQFAHQVLDESPHRNLVTWTAMIDGYVRNGFPVDGIKCFK 185
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
K+ S+GV DE+T+V VL A+ G + FG K ++++ +++++MY K
Sbjct: 186 KMRSMGVKIDEITVVSVLCAAGMAGDVWFGRWVHGFYVESGRVKWDVYIGSSLLDMYCK 244
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q RF +AL F + V ++ T+ VLTAS+ GA + + +D +S
Sbjct: 269 LIAGYVQCNRFKDALLLFQDMLLTDVRPNQCTLSSVLTASAQLGALDRGRWVHDYIDRNS 328
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
++S + A+I Y++ G +EA F KL V+T
Sbjct: 329 LEMNS-----------------ILGTALIDMYAKCGCISEAYVVFNKLHIKNVYT 366
>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
Length = 638
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+QAG E FG++ G DE T+V +L A S G + + + + +S
Sbjct: 184 MIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSG 243
Query: 61 YSL-----SSKTSRYAHSGRIRLAR----------------------------------- 80
+ S+ Y G + +AR
Sbjct: 244 SRVDLILESALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFD 303
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ VS AMIS Y Q G+ +EAL+ + +++S G+ DE+T+V VL+AS G L
Sbjct: 304 HMPERNIVSWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTV 363
Query: 136 GK-------SNIF-----LTTAIIEMYAK 152
GK NI+ L ++++MYAK
Sbjct: 364 GKMVHLYIRDNIYNPDVSLVNSLLDMYAK 392
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G+ +EAL+ + +++S G+ DE+T+V VL+AS G + K + + + +
Sbjct: 316 MISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYIRDNI 375
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y+ ++S YA G++ A R+ VS +I G + GR + + F
Sbjct: 376 YNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTITFFR 435
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
+ + D +T V +L+A S G L+ G+ +++ +E YA M
Sbjct: 436 SMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACM 488
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ VS +MI GY+QAG E FG++ G DE T+V +L A S G L+ G
Sbjct: 176 RNVVSWNSMIGGYAQAGDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLV 235
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++ L +A+++MY K
Sbjct: 236 HCRMLVSGSRVDLILESALVDMYGK 260
>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 818
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AWILAKEL-QIE 55
MI G +Q G EA F K+ G VTM+ VL A + G W + K L +++
Sbjct: 318 MIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLK 377
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LD + ++S S Y+ R+ +A + V+ AMI GY+Q G EAL F
Sbjct: 378 LDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNVTWNAMILGYAQNGCVKEALNLFCM 437
Query: 108 LESLGVHTDEVTMVVVLAASS------------GPGALDFGKSNIFLTTAIIEMYAK 152
++S G+ D T+V V+ A + G +N+F++TA+++MYAK
Sbjct: 438 MQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAK 494
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI GY+Q G EAL F ++S G+ D T+V V+TA + WI ++
Sbjct: 418 MILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRAC 477
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+D + + ++ YA G I+ AR ++ AMI GY G E L+ F
Sbjct: 478 MDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFN 537
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ V +++T + V++A S G ++ G
Sbjct: 538 EMQKGAVKPNDITFLSVISACSHSGFVEEG 567
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY+Q G AL+ +++ G D VT+V +L A + K L+I +
Sbjct: 217 LVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVAD------MKALRIGRSIHG 270
Query: 61 YSLSSK-----------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNE 100
Y+ S Y G R+AR VS MI G +Q G E
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEE 330
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIE 148
A F K+ G VTM+ VL A + G L+ G SN+ + ++I
Sbjct: 331 AFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLIS 390
Query: 149 MYAK 152
MY+K
Sbjct: 391 MYSK 394
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVV----VLTASSGPGAWILAKELQIE- 55
M+ GY++ +AL F L + DEV +VV L G L K +I
Sbjct: 116 MLKGYAKNSSLGDALCFF-----LRMMCDEVRLVVGDYACLLQLCGENL-DLKKGREIHG 169
Query: 56 ------LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNE 100
+ + + +++ S YA +I A +D VS +++GY+Q G
Sbjct: 170 LIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKR 229
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIE 148
AL+ +++ G D VT+V +L A + AL G+S + +T A+++
Sbjct: 230 ALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLD 289
Query: 149 MYAK 152
MY K
Sbjct: 290 MYFK 293
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDL 58
MI G ++ G + EA E + +++ G+ +++T V++L A P A +E+ ++ D
Sbjct: 417 MIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDG 476
Query: 59 SSYSLSSKT---SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S + S YA G I+ AR D +S AMI G +++G EAL F
Sbjct: 477 FMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQ 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ + VT +L A S P ALD+G+
Sbjct: 537 DMQQAGLKPNRVTYTSILNACSSPAALDWGR 567
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
M+ GY Q G EAL+ +++ G+ T + +L++ P A +E+ +E
Sbjct: 215 MVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKAR 274
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
L + + YA G I AR+ VS +I GY+ G A E F
Sbjct: 275 LLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQ 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K++ GV + +T + VL A SGP AL +GK S++ + TA+++MYAK
Sbjct: 335 KMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAK 392
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI G +++G EAL F ++ G+ + VT +L A S P A + + IE
Sbjct: 518 MIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAG 577
Query: 58 LSSYSLSSKT--SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ + + T + Y+ G ++ AR D V+ AMI GY+ EAL+ F
Sbjct: 578 LATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ D+VT + +L A + G+L++ K S+ L A++ YAK
Sbjct: 638 RLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAK 695
Score = 39.7 bits (91), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 23/118 (19%)
Query: 58 LSSYSLSSKTSRYAHSGRIRLARDPV-----------SCKAMISGYSQAGRFNEALEPFG 106
L Y++++ + Y G I AR S AM+ GY Q G EAL+
Sbjct: 174 LDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLR 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ T + +L++ P AL+ G+ ++ + I+ MYAK
Sbjct: 234 EMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAK 291
>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGA-----WIL--AKEL 52
MI+GY+Q G ++E F ++ S + + DEVT+ VL+A GA W+L +E
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPF 105
I+L +S ++ + SK A + RI RD VS +ISG++ G EA++
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
+E G+ D VT + VL A S G L+ GK N+F + ++ YA M
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGK-NVFKSIQAPTVDHYACM 530
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 47/180 (26%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M S Y+Q EAL F ++ G+ D+ T VV +++ S G LA + +D
Sbjct: 229 MQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH 288
Query: 61 YSLSS--KT-----------------------------------SRYAHSGRIRLAR--- 80
L+S KT S Y G++ LAR
Sbjct: 289 IVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELF 348
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLAASSGPGAL 133
D VS +MI+GY+Q G ++E F ++ S + + DEVT+ VL+A GAL
Sbjct: 349 DNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL 408
Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AM S Y+Q EAL F ++ G+ D+ T VV +++ S G S
Sbjct: 221 RSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI 280
Query: 139 -----------NIFLTTAIIEMYAK 152
N F+ TA+++M+AK
Sbjct: 281 LRMIDQKHIVLNSFVKTALLDMHAK 305
>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g14470-like [Cucumis sativus]
Length = 759
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGA-----WIL--AKEL 52
MI+GY+Q G ++E F ++ S + + DEVT+ VL+A GA W+L +E
Sbjct: 362 MIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREK 421
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPF 105
I+L +S ++ + SK A + RI RD VS +ISG++ G EA++
Sbjct: 422 NIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLV 481
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
+E G+ D VT + VL A S G L+ GK N+F + ++ YA M
Sbjct: 482 LTMEEEGIEPDHVTYIGVLTACSHAGLLNEGK-NVFKSIQAPTVDHYACM 530
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 47/180 (26%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M S Y+Q EAL F ++ G+ D+ T VV +++ S G LA + +D
Sbjct: 229 MQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKH 288
Query: 61 YSLSS--KT-----------------------------------SRYAHSGRIRLAR--- 80
L+S KT S Y G++ LAR
Sbjct: 289 IVLNSFVKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELF 348
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLAASSGPGAL 133
D VS +MI+GY+Q G ++E F ++ S + + DEVT+ VL+A GAL
Sbjct: 349 DNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGAL 408
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AM S Y+Q EAL F ++ G+ D+ T VV +++ S G S
Sbjct: 221 RSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSI 280
Query: 139 -----------NIFLTTAIIEMYAK 152
N F+ TA+++M+AK
Sbjct: 281 LRMIDQKHIVLNSFVKTALLDMHAK 305
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY A RF EALE F +++ V DE TMV V+TA + GA W+ +
Sbjct: 226 MIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQG 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ ++ Y+ G I A RD + A+I G + G EA+E F
Sbjct: 286 IKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFH 345
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
++ + DEVT + VL A + G +D G+ FL+ +IE Y
Sbjct: 346 RMIRVSETPDEVTFIGVLTACTHAGLVDKGR-EFFLS--MIEAY 386
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 85/210 (40%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----------------GP 43
+ISG+++ GRF E+ F + G VT V VL+A G
Sbjct: 93 LISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS 152
Query: 44 G-----------------------AWILAKELQIELDLSSYSLSSKTSRYAHSGRIR--- 77
G AW + +Q+ +S SL S +R R
Sbjct: 153 GVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLF 212
Query: 78 ---LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
RD VS AMI GY A RF EALE F +++ V DE TMV V+ A + GAL+
Sbjct: 213 DRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALE 272
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G K + F+ A+I+MY+K
Sbjct: 273 MGEWVRVYMSRQGIKMDAFVGNALIDMYSK 302
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF------ 135
PV+ A+ISG+++ GRF E+ F + G VT V VL+A G G D
Sbjct: 87 PVAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSA-CGKGTRDVLLGMQV 145
Query: 136 -GK-------SNIFLTTAIIEMYAK 152
G+ ++ + A+++MYA+
Sbjct: 146 HGRVVGSGVLPDLRVENALVDMYAE 170
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY Q F E L F ++ V DE +V +L+A + GA WI ++
Sbjct: 208 MISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLG 267
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ + YA G + LA RD V AMISG + G A++ F
Sbjct: 268 LPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFM 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E G+ D +T + VLAA S G +D G
Sbjct: 328 EMEKAGIKPDNITFIAVLAACSNSGMVDEG 357
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK 107
+LS+ S + YA+ G + AR D + K AMISGY Q F E L F
Sbjct: 168 ELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRL 227
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALD--------FGKSNIFLT----TAIIEMYAK 152
++ V DE +V +L+A + GALD G+ + LT T +I+MYAK
Sbjct: 228 MQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAK 284
>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
Length = 670
Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 88/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G + EALE F ++ V DE TMV V++AS+ G+ L +++ +
Sbjct: 166 MISGYVETGNYKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHG 225
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 226 FGSNLKIVNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQ 285
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MY+K
Sbjct: 286 EMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSK 345
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q NE LE K+ H D V+ ++T + G A+ + E+ +
Sbjct: 104 LISMYVQ----NERLEDAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPV-- 157
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY + G + EALE F ++ V DE TM
Sbjct: 158 -------------------KDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTM 198
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++AS+ G+++ G+ SN+ + A+I+ Y+K
Sbjct: 199 VTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSK 242
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 267 LIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRL 326
Query: 61 YSLSSKTS-------RYAHSGRIRLARDPVS---------CKAMISGYSQAGRFNEALEP 104
+++ +S Y+ G I A + AMI G++ GR N A +
Sbjct: 327 KGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDI 386
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ + D++T V +L+A S G LD G+ +IF
Sbjct: 387 FSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR-HIF 422
>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Cucumis sativus]
Length = 687
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG+ Q GRF+EAL F ++ G +E + L+A +G L ++ + S+
Sbjct: 122 MISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSN 181
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ Y+ GR+ A R VS ++I+ Y Q G +EAL+ F
Sbjct: 182 YLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFV 241
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
++ GV DEVT+ V++A + A+ G ++++ L A+++MYAK
Sbjct: 242 EMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAK 300
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE--------- 51
+I+G +Q G EAL F L+ V T +L A + L ++
Sbjct: 356 LIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHG 415
Query: 52 --LQIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
Q D + +S Y G + L +D VS AMI GY+Q G N+
Sbjct: 416 FRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNK 475
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ALE F K+ G D VTM+ VL A S G LD G+
Sbjct: 476 ALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGR 512
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D S +MISG+ Q GRF+EAL F ++ G +E + L+A +G L G
Sbjct: 115 DQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIH 174
Query: 138 ---------SNIFLTTAIIEMYAK 152
S++++ +A+++MY+K
Sbjct: 175 SLVYRSNYLSDVYMGSALVDMYSK 198
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+ Y Q G +EAL+ F ++ GV DEVT+ V++A + G I A+ ++ +
Sbjct: 223 LITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCD 282
Query: 56 LDLSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ L ++ YA RI AR VS +M+SGY++A + A F
Sbjct: 283 EFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMF 342
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPG 131
+ + D +T ++A + G
Sbjct: 343 SNM----MVKDVITWNALIAGCTQNG 364
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G+SQ G +AL F ++ GV +++T+V L A + GA + + + L +
Sbjct: 276 MINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNG 335
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L ++ YA G I+ A +D ++ MI G++ G F++AL+ F
Sbjct: 336 FQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFV 395
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++S G++ DEV + +L A S G +D G
Sbjct: 396 KMKSAGINPDEVIFLAILTACSHSGNVDQG 425
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS MI+G+SQ G +AL F ++ GV +++T+V L A + GAL G+
Sbjct: 268 KNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERI 327
Query: 138 -----SNIF-----LTTAIIEMYAK 152
SN F + TA+++MYAK
Sbjct: 328 HNYLSSNGFQLNRGIGTALVDMYAK 352
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G ++ R E + F +++ + +E+TM+ ++ GA L K+L + +
Sbjct: 269 MIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNG 328
Query: 61 YSLS-----SKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S+S + Y IR AR D + AM+S Y+QA ++A F
Sbjct: 329 FSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFD 388
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + GV +VT+V +L+ + GALD GK + L TA+++MYAK
Sbjct: 389 QMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAK 446
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+S Y+QA ++A F ++ + GV +VT+V +L+ + GA L K + +D
Sbjct: 370 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 429
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I ++RD A+I+G++ G EAL+ F
Sbjct: 430 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 489
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++E GV +++T + +L A S G + GK
Sbjct: 490 EMERQGVKPNDITFIGLLHACSHAGLVTEGKK 521
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI S+ F+ ALE ++ + V EV MV ++ + + K + + +S
Sbjct: 166 MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNS 225
Query: 61 Y-------SLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEP 104
+ ++ YA G + LAR VS AMI+G ++ R E +
Sbjct: 226 NNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKL 285
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F +++ + +E+TM+ ++ GAL GK ++ L TA+++MY K
Sbjct: 286 FIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGK 345
>gi|302818178|ref|XP_002990763.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
gi|300141501|gb|EFJ08212.1| hypothetical protein SELMODRAFT_132289 [Selaginella moellendorffii]
Length = 661
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI Y+Q GR AL FG ++ GV D +T++ VL A +G G ++ ++L
Sbjct: 409 MIGAYAQHGRGRLALAVFGGMQQHGVKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQ 468
Query: 58 LSSYSL-SSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEPF 105
L S +L ++ + YA SGR+ AR+ +S AM++ Y+ G EA F
Sbjct: 469 LRSAALDNAAVNMYAKSGRVAAAREVFEAMDSQRRTIMSWSAMVAAYAGVGHAEEAFRLF 528
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ GV + VT++ +L A S G L G S
Sbjct: 529 HAMQREGVRPNHVTLISILGACSHAGMLQAGCS 561
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 81/184 (44%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGYSQ G + L F + GV + VT++ V+ A S A ++ + L S
Sbjct: 301 MLSGYSQHGHGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQLRQADDIHGRIVLQS 360
Query: 61 Y---SLSSKT---------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFN 99
+LS +T S YA G I A R+ VS AMI Y+Q GR
Sbjct: 361 RDTPALSLRTNAVVGCALCSMYARCGSIDEAAAVFAGMEQRNVVSWNAMIGAYAQHGRGR 420
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPG-----------ALDFGKSNIFLTTAIIE 148
AL FG ++ GV D +T++ VL A +G G +L + L A +
Sbjct: 421 LALAVFGGMQQHGVKPDAITLISVLDACAGAGDARRGSQVHGWSLQLQLRSAALDNAAVN 480
Query: 149 MYAK 152
MYAK
Sbjct: 481 MYAK 484
Score = 43.1 bits (100), Expect = 0.035, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 24/157 (15%)
Query: 1 MISGYSQAGRFNEALEPF--------GKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52
+I+GY+Q+G EAL+ F G E+ V + VT+V V+ + A K +
Sbjct: 190 LIAGYAQSGHLEEALDLFWSMAEHDGGGGETWSVAPNAVTIVTVVNLCAEFAALDQGKAI 249
Query: 53 QIEL-------DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAG 96
D +S + YA G I AR + VS AM+SGYSQ G
Sbjct: 250 HDRCIHAAAIRDDPVQIGTSLVTMYAKCGSIEDARLVFDSMAERNEVSWNAMLSGYSQHG 309
Query: 97 RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+ L F + GV + VT++ V+ A S L
Sbjct: 310 HGAQLLHLFRAMLQGGVQPNAVTLLPVVNACSSLAQL 346
Score = 38.9 bits (89), Expect = 0.74, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 22/96 (22%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPF--------GKLESLGVHTDEVTMVVVLAASSGP 130
AR+ V+ A+I+GY+Q+G EAL+ F G E+ V + VT+V V+ +
Sbjct: 181 ARNVVTWTALIAGYAQSGHLEEALDLFWSMAEHDGGGGETWSVAPNAVTIVTVVNLCAEF 240
Query: 131 GALDFGKS--------------NIFLTTAIIEMYAK 152
ALD GK+ + + T+++ MYAK
Sbjct: 241 AALDQGKAIHDRCIHAAAIRDDPVQIGTSLVTMYAK 276
>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 816
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MI GY+Q G NEAL F +++S + D T+V V+TA + WI ++
Sbjct: 416 MILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+D + + ++ +A G I+ AR ++ AMI GY G EAL+ F
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFN 535
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++++ V +E+T + V+AA S G ++ G
Sbjct: 536 EMQNGSVKPNEITFLSVIAACSHSGLVEEG 565
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-------AWILAKELQ 53
MI GY+Q G EA F K+ GV V+M+ L A + G L E +
Sbjct: 315 MIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKK 374
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I D+S ++S S Y+ R+ +A + V+ AMI GY+Q G NEAL
Sbjct: 375 IGFDVSV--MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL 432
Query: 105 FGKLESLGVHTDEVTMVVVLAASS------------GPGALDFGKSNIFLTTAIIEMYAK 152
F +++S + D T+V V+ A + G N+F+ TA+I+ +AK
Sbjct: 433 FCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAK 492
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 78/184 (42%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY+Q G A++ +++ G D +T+V VL A + K L+I +
Sbjct: 214 VVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVAD------LKALRIGRSIHG 267
Query: 61 YSL-----------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNE 100
Y+ ++ Y G +R A R+ VS MI GY+Q G E
Sbjct: 268 YAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEE 327
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
A F K+ GV V+M+ L A + G L+ G+ ++ + ++I
Sbjct: 328 AFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLIS 387
Query: 149 MYAK 152
MY+K
Sbjct: 388 MYSK 391
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
RD VS +++GY+Q G A++ +++ G D +T+V VL A + AL G+S
Sbjct: 206 RDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRS 264
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 33/185 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY + + EAL+ F + V +E+TMV L A + G W+ + +
Sbjct: 176 LIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAG 235
Query: 56 LDLSSYSLSSKT-------SRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFN 99
D + +S YA GR+++ARD VS +MI+ Y+Q R
Sbjct: 236 YDPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQ 295
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
EAL+ F + + GV+ D+ T + VL+ + AL G+ ++I L TA++
Sbjct: 296 EALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALL 355
Query: 148 EMYAK 152
+MYAK
Sbjct: 356 DMYAK 360
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+ Y+Q R EAL+ F + + GV+ D+ T + VL+ + A L + +
Sbjct: 284 MINAYNQYERHQEALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTG 343
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I L + + +KT ++ +I +D V +MI+G + G NEAL F
Sbjct: 344 IATDISLATALLDMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQ 403
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
+ E + D +T + VL A S G ++ K + L T EMY
Sbjct: 404 TMQEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMT---EMY 445
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
V+ +I+GY + + EAL+ F + V +E+TMV L A + +D G+
Sbjct: 171 VAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQR 230
Query: 138 --------------SNIFLTTAIIEMYAK 152
SNI L TAI+EMYAK
Sbjct: 231 IRKAGYDPFMSTSNSNIILATAILEMYAK 259
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++GY QAG EAL F ++++ GV D+ +V VL A + G W+
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANN 373
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + ++ YA G ++LA ++ ++ MI G + GR +EALE F
Sbjct: 374 IRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFS 433
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E LGV D++ + L A + G +D G+
Sbjct: 434 QMERLGVKPDDIAFIGALCACTHTGLVDKGR 464
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEAL 102
L+ + + + ++ + YA +GR+ AR+ VS AM++GY QAG EAL
Sbjct: 269 LRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 328
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------SNI----FLTTAIIEMY 150
F ++++ GV D+ +V VLAA + G L+ GK +NI FL TA+++MY
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMY 388
Query: 151 AK 152
AK
Sbjct: 389 AK 390
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR +EALE F ++E LGV D++ + L A + G +EL + +
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGREL-FDSMVRK 473
Query: 61 YSLSSKTSRY-------AHSGRIRLARD-----PVSCKAMISGYSQAG-RFNEALE 103
Y + K Y A +G + AR+ P+ A+I G AG RF++ +E
Sbjct: 474 YGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVE 529
>gi|302763041|ref|XP_002964942.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
gi|300167175|gb|EFJ33780.1| hypothetical protein SELMODRAFT_20633 [Selaginella moellendorffii]
Length = 604
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 28/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+Q G+ +++L F ++ GV D T V V+ A S A L K +E +S
Sbjct: 157 MISSYAQHGQASKSLLLFHQMSLEGVKPDARTFVSVIGACSSLQA--LEKGRAVEEQATS 214
Query: 61 YSL----SSKTSRYAHSGRIRLARD----------PVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ S YA G + ARD VS +MI+ Y+Q+GR EALE +
Sbjct: 215 MGIEEGRTALLSLYAKCGNLEAARDIFDKLKYRKNVVSWNSMIAAYAQSGRGREALELYE 274
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ GV D++T L A + G G ++++FL TAI+ MYAK
Sbjct: 275 LMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRITESKIRTDVFLDTAIVNMYAK 332
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI+ Y+Q+GR EALE + ++ GV D++T L A S G I ++ + +
Sbjct: 256 MIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGVEIHSRITESK 315
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ + YA G + A ++ V+ AM+ + Q G EAL+ +
Sbjct: 316 IRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQHGYDREALDLYL 375
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ S G E+T+ LAA S GAL GK + +FL +++ MYAK
Sbjct: 376 RMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAK 434
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 17/133 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ YSQ G E LE F K++ V D +T +L A S L KE+ + S
Sbjct: 10 MVVAYSQHGHGEEMLELFRKMD---VEPDSITYASILGACSAMELLELGKEVHARVSRSR 66
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y+ G + AR DP AMISG Q GR EAL F
Sbjct: 67 FKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFE 126
Query: 107 KLESLGVHTDEVT 119
++++ V D+ +
Sbjct: 127 RMKAESVRIDKAS 139
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GY QAG +AL F + V EVT VL A +G PG+ I + ++
Sbjct: 419 VIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTI 478
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D ++ ++ YA G I+ AR D VS AMISGYS G + EAL+ F
Sbjct: 479 YDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFE 538
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ D+VT V +L+A S G LD G++
Sbjct: 539 SMLETECKPDKVTFVGILSACSNAGLLDRGQA 570
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+ Y+Q+ + EA+E F ++ V ++ T+ +L A + G I +++
Sbjct: 318 MIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVG 377
Query: 56 LDLSSYSLSSKTSRYAHSGRIR-----LARDP----VSCKAMISGYSQAGRFNEALEPFG 106
LD++ + ++ YA GR+ + P VS +I GY QAG +AL F
Sbjct: 378 LDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFK 437
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ V EVT VL A +G AL+ G N + A+I+MYAK
Sbjct: 438 DMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAK 495
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
+I GYSQ RF+EA+ F +L+ G + VL + G + A ++
Sbjct: 116 LIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLG 175
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D ++ ++ Y+ G AR D VS M++ Y + F E+L+ F
Sbjct: 176 FDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFS 235
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ +G + T VL A G + GK+ +F+ +I++Y K
Sbjct: 236 RMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK 293
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
M++ Y + F E+L+ F ++ +G + T VL A G + + K
Sbjct: 217 MVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTS 276
Query: 51 ---ELQIELDLSSYSLSSKTSRYAHSGRIRLARDPV-SCKAMISGYSQAGRFNEALEPFG 106
EL + ++L + S A + +D V MI+ Y+Q+ + EA+E F
Sbjct: 277 YLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFC 336
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ V ++ T+ +L A + L G N+F++ A+++MYAK
Sbjct: 337 RMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAK 394
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 84/210 (40%), Gaps = 57/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
+IS Y Q + EAL F ++ + G+ DEV ++ VL+A S I K
Sbjct: 260 LISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVG 319
Query: 51 -ELQIELD-------------------------LSSYSLSSKTSRYAHSGRIRLAR---- 80
E + L L S +S S Y G I AR
Sbjct: 320 IETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFD 379
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMISGY+Q RF E L F +++ G DE +V V++A + ALD
Sbjct: 380 SMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQ 439
Query: 136 GKS------------NIFLTTAIIEMYAKM 153
GK NI L T +I MY K+
Sbjct: 440 GKWIHAYIRKNGLKINIILGTTLINMYMKL 469
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY+Q RF E L F +++ G DE +V V++A + G WI A +
Sbjct: 392 MISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNG 451
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
L ++ ++ + Y G + A + + A+I G + G +++L+ F
Sbjct: 452 LKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFS 511
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV +E+T V VL A G +D G
Sbjct: 512 EMKEHGVTPNEITFVAVLGACRHMGLVDEG 541
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG-----PGALD 134
+D VS A+IS Y Q + EAL F ++ + G+ DEV ++ VL+A S G L
Sbjct: 252 KDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLV 311
Query: 135 FG-------KSNIFLTTAIIEMYA 151
G ++ + L A+I MY+
Sbjct: 312 HGLVVKVGIETYVNLQNALIHMYS 335
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 13/88 (14%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLAASSGPGALDFG 136
L RD +S AMI GY Q G++++A+E F +++ + GV D+VT+V VL+A + GALDFG
Sbjct: 206 LERDVISWNAMIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFG 265
Query: 137 KS------------NIFLTTAIIEMYAK 152
+ N++L A+I+MYAK
Sbjct: 266 RWIDRFVGWRGRGLNLYLGNALIDMYAK 293
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 83/168 (49%), Gaps = 25/168 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGA-----WI------L 48
MI GY Q G++++A+E F +++ + GV D+VT+V VL+A + GA WI
Sbjct: 216 MIGGYVQNGKYSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWR 275
Query: 49 AKELQIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ L + L + + +K + RI RD +S MI G G +EA +
Sbjct: 276 GRGLNLYLGNALIDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYY 335
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
K+ GV +EVT + +L+A S G +D G IE++++M
Sbjct: 336 SKMLECGVKPNEVTFMGLLSACSHAGLVDKG----------IELFSRM 373
>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
Length = 602
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +A RF +ALE F ++ +LGV + L A +G GA +E+ ++ S
Sbjct: 201 MISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSG 260
Query: 61 YSLSSKTSR-----YAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +K + Y G + R+ AR + MI G++ GR ++ALE F
Sbjct: 261 IEVDAKLATAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFH 320
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E+ GV D+VT++ VL A + G + G+
Sbjct: 321 QMEAAGVAPDDVTLLNVLTACAHAGEVSEGR 351
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AR+ VS +MISGY +A RF +ALE F ++ +LGV + L A +G GAL G+
Sbjct: 192 ARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGRE 251
Query: 139 ------------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 252 IYRWVEQSGIEVDAKLATAVVDMYCK 277
>gi|255570402|ref|XP_002526160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534537|gb|EEF36236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 762
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MISG++Q G +++E F + G+ + T+ VL+A + G + A+ ++
Sbjct: 156 MISGHAQRGHETKSIELFCNMRKAGIKSTRSTLGSVLSAIASLTDLDFGLLVHAEAIKQG 215
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVS------CKAMISGYSQAGRFNEALEPFG 106
LD + Y SS + YA + A+ DP+ AM+ GY+Q G +E +E
Sbjct: 216 LDSNVYVGSSLINMYAKCKELEAAKKVFDPIDERNVVLWNAMVGGYAQNGYAHEVIELLS 275
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++S G H DE T +L+A + ++ G+ SN+F+ A+I+MYAK
Sbjct: 276 NMKSCGFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNKFASNLFVGNALIDMYAK 333
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ GY+Q G +E +E ++S G H DE T +L+A + G + + ++ +
Sbjct: 257 MVGGYAQNGYAHEVIELLSNMKSCGFHPDEFTYTSILSACACLEHVEGGRQLHSIIIKNK 316
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA SG + AR D VS A+I GY Q EA F
Sbjct: 317 FASNLFVGNALIDMYAKSGFLEDARKQFELMKSRDNVSWNAIIVGYVQEEDEVEAFLMFQ 376
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ +G+ DEV++ +L+A + + GK ++++ +++I+MYAK
Sbjct: 377 KMHLVGILPDEVSLASILSACANVEGFEQGKPIHCLSVKSGLETSLYAGSSLIDMYAK 434
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 14/134 (10%)
Query: 15 LEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIELDLSSYSLSSKTSR 69
L+ +G L S G+ +E T +VL+ S G + +++ + SS+ + +
Sbjct: 3 LKCYGLLWSHGMWPNEFTFAIVLSGCARLDSVEFGRLVHCNVVKLGFEFSSFCVGALIDM 62
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA + R+ R D VS ++I+GY +AG EALE F +++ +G D+V
Sbjct: 63 YAKNNRMSDCRRVFDGGVSLDTVSWTSLIAGYVKAGLPEEALEVFEQMKKVGREPDQVAF 122
Query: 121 VVVLAASSGPGALD 134
V V+ A G LD
Sbjct: 123 VTVINAYVALGRLD 136
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP---------GAWILAKE 51
+I+GY+ EA+ F K+++ G++ E+T +L GP IL +
Sbjct: 459 LIAGYAPVN-LEEAIILFEKMQAEGLNPSEITFASLLDGCGGPEQLILGIQIHCLILKRG 517
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR-------DPVSC---KAMISGYSQAGRFNEA 101
LQ + D SL Y S R AR +P S AMISG +Q +EA
Sbjct: 518 LQYDDDFLGVSL---LGMYVKSLRKTDARILFSEFSNPKSTILWTAMISGLAQNNCSDEA 574
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIFLT---------TAIIEM 149
L+ + ++ S D+ T V VL A + ++ G+ S IF T +A+I+M
Sbjct: 575 LQFYQEMRSCNALPDQATFVSVLRACAVLSSIGDGREIHSLIFRTGLDLDESTCSALIDM 634
Query: 150 YAK 152
YAK
Sbjct: 635 YAK 637
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY Q F E L+ F ++S G+ DE +V +L A + GA + + LD
Sbjct: 208 IISGYVQNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLG 267
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS + S YA G + +A RD + AMISG + G + AL F
Sbjct: 268 HPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFS 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++E GV D++T + + A S G
Sbjct: 328 EMEKAGVKPDDITFIAIFTACSYSG 352
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGKLE 109
++ S + S YA G + AR D K ++ISGY Q F E L+ F ++
Sbjct: 170 TAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFRLMQ 229
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
S G+ DE +V +L A + GA++ G ++ L+T +I+MYAK
Sbjct: 230 STGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAK 284
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++GY QAG EAL F ++++ GV D+ +V VL A + G W+
Sbjct: 314 MVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANN 373
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + ++ YA G ++LA ++ ++ MI G + GR +EALE F
Sbjct: 374 IRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFS 433
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E LGV D++ + L A + G +D G+
Sbjct: 434 QMERLGVKPDDIAFIGALCACTHTGLVDKGR 464
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 66/122 (54%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEAL 102
L+ + + + ++ + YA +GR+ AR+ VS AM++GY QAG EAL
Sbjct: 269 LRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREAL 328
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------SNI----FLTTAIIEMY 150
F ++++ GV D+ +V VLAA + G L+ GK +NI FL TA+++MY
Sbjct: 329 GLFARMQADGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMY 388
Query: 151 AK 152
AK
Sbjct: 389 AK 390
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR +EALE F ++E LGV D++ + L A + G +EL + +
Sbjct: 415 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGREL-FDSMVRK 473
Query: 61 YSLSSKTSRY-------AHSGRIRLARD-----PVSCKAMISGYSQAG-RFNEALE 103
Y + K Y A +G + AR+ P+ A+I G AG RF++ +E
Sbjct: 474 YGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVE 529
>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 592
Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY Q G EA+E F ++ LGV D T V +L+A + G G W+ +
Sbjct: 190 MISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNC 249
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
DL+ ++ + Y+ G + AR + V+ AMISGY G ++A+E F
Sbjct: 250 FDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFN 309
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
++ G + VT V VL+A + G +D G+ IF T
Sbjct: 310 EMSFDGPRPNNVTFVAVLSACAHAGLVDEGR-QIFTT 345
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKT---- 67
E+L + ++ + + T V+ +S+ A+ + + + + + Y L +
Sbjct: 100 QESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAAL 159
Query: 68 -SRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
S YA SG + +AR V+ +MISGY Q G EA+E F ++ LGV D
Sbjct: 160 VSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDS 219
Query: 118 VTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
T V +L+A + GA+ G N+ L TA++ MY++
Sbjct: 220 STFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSR 266
>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
Length = 672
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + F EALE + + V DE TMV V++A + G+ L ++L ++
Sbjct: 168 MISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHG 227
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I G++ + EAL F
Sbjct: 228 FGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQ 287
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ VL A + GA+D G+ +++ L T++I+MYAK
Sbjct: 288 EMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAK 347
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI---LAKEL 52
+I G++ + EAL F ++ G ++VTM+ VL A + GA WI + K L
Sbjct: 269 LIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRL 328
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALE 103
+ + SS L+S YA G I L R S AMI G++ G+ N A +
Sbjct: 329 KGVTNASSL-LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFD 387
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
F K+ G+ D++T V +L+A S G LD G+ S + T +E Y M
Sbjct: 388 LFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCM 443
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q GR +A + F + H V+ ++T + G A++L E+ +
Sbjct: 106 LISMYAQNGRLEDAHKVFDR----SSHRHVVSYTALITGYASRGYINNARKLFDEISV-- 159
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY + F EALE + + V DE TM
Sbjct: 160 -------------------KDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTM 200
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SNI + +I++Y+K
Sbjct: 201 VTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSK 244
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 19/138 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ G+ N A + F K+ G+ D++T V +L+A S G LDL
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGM----------LDLGR 421
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ S + Y +I + C MI G F EA E + ++ + D V
Sbjct: 422 HIFRSMSQDY----KITPKLEHYGC--MIDLLGHCGLFKEAKE---MIRTMPMEPDGVIW 472
Query: 121 VVVLAASSGPGALDFGKS 138
+L A ++ G+S
Sbjct: 473 CSLLKACKMHNNVELGES 490
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+G++ GR NEAL F ++ GV D T+V +L+AS+ GA L + L++
Sbjct: 190 MINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVG 249
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L +S+ +S YA G IR A R+ VS ++I G + G EALE F
Sbjct: 250 LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFK 309
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E G+ E+T V VL A S G LD G
Sbjct: 310 EMEGQGLVPSEITFVGVLYACSHCGMLDEG 339
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V+ +MI+G++ GR NEAL F ++ GV D T+V +L+AS+ GAL+ G+
Sbjct: 182 RDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRV 241
Query: 138 ----------SNIFLTTAIIEMYAK 152
N +T +++++YAK
Sbjct: 242 HVYLLKVGLSKNSHVTNSLLDLYAK 266
>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
Length = 602
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +A RF +ALE F ++ +LGV + L A +G GA +E+ ++ S
Sbjct: 201 MISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSG 260
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +K + Y G + A R + MI G++ GR ++ALE F
Sbjct: 261 IEVDAKLATAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFH 320
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E+ GV D+VT++ VL A + G + G+
Sbjct: 321 QMEAAGVAPDDVTLLNVLTACAHAGEVSEGR 351
Score = 53.5 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AR+ VS +MISGY +A RF +ALE F ++ +LGV + L A +G GAL G+
Sbjct: 192 ARNLVSWNSMISGYVKADRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGRE 251
Query: 139 ------------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 252 IYRWVEQSGIEVDAKLATAVVDMYCK 277
>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 867
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP------GAWILAKELQI 54
M++GY+Q G EA + F +L G+ +E T V+ A + P G A +++
Sbjct: 465 MLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKM 524
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L+ + S+ + YA G I A RD VS +MISGYSQ G+ +ALE F
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVF 584
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ + D VT + V+ A + G ++ G+
Sbjct: 585 DEMQKRNMDVDAVTFIGVITACTHAGLVEKGQ 616
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG Q G ++A+ F ++ GV + T +LT + E+ E+ ++
Sbjct: 368 MISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYP----VFVSEMHAEVIKTN 423
Query: 61 YSLSSKTSRYAHSGRIRL--------------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y SS ++L A+D ++ AM++GY+Q G EA + F
Sbjct: 424 YERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFH 483
Query: 107 KLESLGVHTDEVTMVVVLAASSGP-GALDFGK------------SNIFLTTAIIEMYAK 152
+L G+ +E T V+ A + P A + GK + + +++A++ MYAK
Sbjct: 484 QLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAK 542
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GYS G + E F +++ GV + T+ V+ A G ++ LQ+ +
Sbjct: 165 LLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEG--VVGIGLQVHAMVVK 222
Query: 61 YSL-------SSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEP 104
+ +S S Y+ G +R ARD V+ +MI+GY + G+ E E
Sbjct: 223 HGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282
Query: 105 FGKLESLGVHTDEVTMVVVLAASS 128
F K++ GV +T V+ + +
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCA 306
Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 15/139 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + G+ E E F K++ GV +T V+ + + L K +Q + S
Sbjct: 266 MIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSG 325
Query: 61 YSLS-----------SKTSRYAHS----GRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
++ SK + + ++ VS AMISG Q G ++A+ F
Sbjct: 326 FTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLF 385
Query: 106 GKLESLGVHTDEVTMVVVL 124
++ GV + T +L
Sbjct: 386 SQMRREGVKPNHFTYSAIL 404
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAW------I 47
M+SGY++ +F ++ F ++E GV + VT+V++L+A S G + I
Sbjct: 179 MLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGI 238
Query: 48 LAKELQIE---LDLSS--------------------YSLSSKTSRYAHSGRIRLAR---- 80
+ + L +E +D+ + S +S + +A+ G+I LAR
Sbjct: 239 VERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFD 298
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMI GY + RF EAL F +++ V DE TMV +L A + GAL+
Sbjct: 299 QIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALEL 358
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ F+ A+I+MY K
Sbjct: 359 GEWVKTYIDKNSIKNDTFVGNALIDMYFK 387
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY + RF EAL F +++ V DE TMV +LTA + GA L + ++ +D +S
Sbjct: 311 MIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKNS 370
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ Y G + A +D + AMI G + G EAL F
Sbjct: 371 IKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEALAMFS 430
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ + DE+T + VL A + G ++ G+S
Sbjct: 431 NMIEASITPDEITYIGVLCACTHAGMVEKGQS 462
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
A + V+ M+SGY++ +F ++ F ++E GV + VT+V++L+A S L+ GK
Sbjct: 170 AWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKH 229
Query: 139 ------------NIFLTTAIIEMYA 151
N+ L +I+M+A
Sbjct: 230 IYKYINGGIVERNLILENVLIDMFA 254
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + +ALE F ++ V DE TM V++A + G+ L +++ ++
Sbjct: 178 MISGYAETGNYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHG 237
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 238 FGSNLKIVNALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQ 297
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF---------------LTTAIIEMY 150
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MY
Sbjct: 298 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMY 357
Query: 151 AK 152
AK
Sbjct: 358 AK 359
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 20/160 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 279 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKL 338
Query: 58 ---LSSYSLSSKTS---RYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEA 101
+ + + S +TS YA G I A R + AMI G++ GR N A
Sbjct: 339 KGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAA 398
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ F ++ G+ D++T V +L+A S G LD G+ NIF
Sbjct: 399 FDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR-NIF 437
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q GR +A + F + H D V+ ++T + G A+++ E+ +
Sbjct: 116 LISMYAQNGRLEDAQKVFDR----SSHRDVVSYTALITGYASRGYIESAQKMFDEIPI-- 169
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + +ALE F ++ V DE TM
Sbjct: 170 -------------------KDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDESTM 210
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V++A + G+++ G+ SN+ + A+I++Y+K
Sbjct: 211 ATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSK 254
>gi|357138657|ref|XP_003570906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Brachypodium distachyon]
Length = 608
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
M+ Y +AG + F + G V +EVT+ VVL A G +L + L+
Sbjct: 188 MMKAYERAGMAADVARMFRDMIDEGAVAPNEVTVAVVLAACRDAGDLVLGRWLEEWVRSA 247
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
E+++ S S+ Y G + AR D V+ AMI+GY+Q G EA+ F
Sbjct: 248 EIEVGSLVGSALVGMYEKCGEMTEARRVFDGIAHKDVVAWNAMITGYAQNGMSKEAIALF 307
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G D++T+V VL+A + GAL+ G N+++ TA+++MY+K
Sbjct: 308 HSMRQEGASPDKITLVGVLSACAAVGALELGTELDAYASHRGLYGNVYVGTALVDMYSK 366
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 17/108 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q G EA+ F + G D++T+V VL+A + GA L++ +L +
Sbjct: 290 MITGYAQNGMSKEAIALFHSMRQEGASPDKITLVGVLSACAAVGA------LELGTELDA 343
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
Y+ +H G L + A++ YS+ G ++A++ FGKL
Sbjct: 344 YA--------SHRG---LYGNVYVGTALVDMYSKCGDLDKAVQVFGKL 380
>gi|255562850|ref|XP_002522430.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538315|gb|EEF39922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 556
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GYSQ G EA E ++ G +E+T+ VL+ G + A L +
Sbjct: 389 IIAGYSQGGCAEEAFEYLSRMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVG 448
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ S+ + Y+ G I+ A D VS AMI+GY++ G EA++ F
Sbjct: 449 LEQTAMIQSALINMYSKCGSIKEASKIFDEAENNDIVSWTAMINGYAEHGCRQEAIDLFE 508
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ +G+ D VT + VL A S G +D G
Sbjct: 509 KIPRIGLKPDPVTFIGVLTACSHAGLVDLG 538
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Y+Q+G+ AL F +++ +GV ++ T V++ + G ++L + L
Sbjct: 288 IITTYTQSGQEENALRAFIRMQEIGVSPNDFTFAAVISGCANLGKTEWGEQLHGHMLCLG 347
Query: 58 LSSY--SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ +S + Y+ G+++ A RD VS +I+GYSQ G EA E
Sbjct: 348 LMTFLSVANSVITLYSKCGQLKSASMVFKELTRRDVVSWSTIIAGYSQGGCAEEAFEYLS 407
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G +E+T+ VL+ L+ GK + +A+I MY+K
Sbjct: 408 RMRREGPKPNELTLASVLSVCGNMAILEQGKQLHAHALHVGLEQTAMIQSALINMYSK 465
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
+I+G+ AG E L F ++ V D T + L A + GA I + L+
Sbjct: 187 IITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHGRQIHCQALKRS 246
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ SS+ ++ + Y G++ RL R+ VS +I+ Y+Q+G+ AL F
Sbjct: 247 LEASSFVANTLATMYNKCGKLDYGSRLFEKMTIRNVVSWTMIITTYTQSGQEENALRAFI 306
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ +GV ++ T V++ + G ++G+
Sbjct: 307 RMQEIGVSPNDFTFAAVISGCANLGKTEWGE 337
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
R+ VS A+I+G+ AG E L F ++ V D T + L A + GALD G+
Sbjct: 179 RNVVSWTAIITGFVHAGYSKEGLVYFSQMWRSKVVCDSYTFAIALKACANLGALDHGR 236
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY Q RF E + FG+++ GV D+ +V +LT + GA WI +
Sbjct: 312 MINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENR 371
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ YA G I + +D S ++I G + G+ +EALE F
Sbjct: 372 IKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELFK 431
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ D++T V VL+A S G ++ G+
Sbjct: 432 AMQTCGLKPDDITFVAVLSACSHAGLVEEGR 462
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKELQI----E 55
MISGY + RF EA++ + ++ + +E T+V L+A + L KE+ E
Sbjct: 180 MISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASE 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--------PVSC---------------------- 85
LDL++ ++ Y G + +AR+ V+C
Sbjct: 240 LDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFE 299
Query: 86 ----------KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
AMI+GY Q RF E + FG+++ GV D+ +V +L + GAL+
Sbjct: 300 RSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQ 359
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K + + TA+IEMYAK
Sbjct: 360 GKWIHNYIDENRIKVDAVVGTALIEMYAK 388
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MI + ++G F A+ F +L GV D T VL G + A ++
Sbjct: 79 MIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAFVVKTG 138
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ Y +S YA G + RD VS MISGY + RF EA++ +
Sbjct: 139 LEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYR 198
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFGK-------SNIFLTT----AIIEMYAK 152
++ + +E T+V L+A + L+ GK S + LTT A+++MY K
Sbjct: 199 RMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCK 256
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GY++ G EAL F +++ G E T +L++ S G W+ A ++
Sbjct: 247 LIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSS 306
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L Y ++ YA SG IR A D VSC +M+ GY+Q G EA + F
Sbjct: 307 QKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFD 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ +++T + VL A S LD GK
Sbjct: 367 EMIRFGIEPNDITFLSVLTACSHARLLDEGK 397
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
MI+GY+Q R ++AL F ++ S G +E T+ ++ AS G I A +
Sbjct: 146 MITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYG 205
Query: 56 LDLSSYSLSSKTSRYAHSGRI---RLARDPVSCK------AMISGYSQAGRFNEALEPFG 106
+ + SS YA G + L D + CK A+I+GY++ G EAL F
Sbjct: 206 CHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFV 265
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G E T +L++ S G L+ GK
Sbjct: 266 RMQREGYRPTEFTYSALLSSCSSMGCLEQGK 296
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS +MI+GY+Q R ++AL F ++ S G +E T+ ++ + + G+
Sbjct: 138 RDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQI 197
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+F+ +++++MYA+
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYAR 222
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI G+ + + A E + ++ G+ D T +L + G+ +L K+L +
Sbjct: 126 MIRGFGRNRKLLMAFEFYKRMLEKGIAADNFTFSFLLKMTGQLGSIMLGKQLHVNILKLG 185
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD Y ++ Y + +AR D V+ A+I + G +NEAL+ F
Sbjct: 186 LDSHVYVRNTLIHMYGRLKDVNIARNLFDELPKTDLVAWNAVIDCHVSCGMYNEALDLFV 245
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV DE T+VV ++A S GALD G+ I + ++I+MYAK
Sbjct: 246 QMLQSGVEPDEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAK 303
>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
Length = 610
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-------WILAKELQ 53
MISGYSQ R EA + F + G +E T+ VLT+ +G + A ++
Sbjct: 107 MISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIK 166
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+L + SS YA S I+ AR D VS ++SGY++ G EAL
Sbjct: 167 KNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNL 226
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F +L + G+ ++VT V+L A SG ++D+GK + L ++I+MY+K
Sbjct: 227 FRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSK 286
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY++ G EAL F +L + G+ ++VT V+L A SG + IL +E
Sbjct: 210 ILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRE 269
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L + + SK + +S R+ R VS AM+ GY + G E ++ F
Sbjct: 270 LPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLF- 328
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ V D VT++ VL S G +D G
Sbjct: 329 RFMCDKVKPDSVTLLAVLLGYSHGGLVDEG 358
>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI Y+Q +EA++ F ++E V +E+T+V VLTA + AK++ +D
Sbjct: 209 MIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETG 268
Query: 58 --LSSYSLSSKTSRYAHSGRIRLARDPVS--------C-KAMISGYSQAGRFNEALEPFG 106
+ S+ Y G LARD + C MI+G+ + + EAL F
Sbjct: 269 IGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFN 328
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ GV D+VTM +L A + GAL+ GK ++ L TA+++MYAK
Sbjct: 329 EMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAK 386
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G+ + + EAL F +++ GV D+VTM +L A + GA L K L + ++
Sbjct: 310 MINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK 369
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I A +D ++ A+I G + G+ +ALE F
Sbjct: 370 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 429
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ V D +T V VLAA S G ++ G
Sbjct: 430 EMQMSEVKPDAITFVGVLAACSHAGLVNEG 459
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISGY G + L+ F ++ LG++TD TMV V+ S G +L + L
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKAS 281
Query: 54 --IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
EL L++ L Y+ SG + A R VS +MI+GY++ G + ++
Sbjct: 282 FGKELTLNNCLL----DMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 337
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F ++E G+ D T+ +L A + G L+ GK S++F++ A+++MY
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397
Query: 151 AK 152
AK
Sbjct: 398 AK 399
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYS+ NEAL F +++ + +TM +L A + A +E+ + +
Sbjct: 424 MIGGYSKNSLPNEALNLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNG 482
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+SL + Y G + LAR D VS MI+GY G +EA+ F
Sbjct: 483 FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFN 542
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD--FGKSNIFLTTAIIE 148
++ + G+ DEV+ + +L A S G LD +G N+ IE
Sbjct: 543 EMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 586
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 50/164 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY++ G F E+L F ++ LG+ E A++L EL
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVES-----------------ARKLFDELG--- 212
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
RD +S +MISGY G + L+ F ++ LG++TD TM
Sbjct: 213 ------------------DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V V+A S G L G++ + L +++MY+K
Sbjct: 255 VSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSK 298
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 35/182 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+GY++ G + ++ F ++E G+ D T+ +L A + G +I +
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENK 382
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+Q +L +S+ + YA G + A +D VS MI GYS+ NEAL
Sbjct: 383 MQSDLFVSN----ALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEAL 438
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------NIF-----LTTAIIEMY 150
F +++ + +TM +L A + AL+ G+ N F + A+++MY
Sbjct: 439 NLFVEMQ-YNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMY 497
Query: 151 AK 152
K
Sbjct: 498 LK 499
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MISGY++ F++A+E + L+S GVH +E MV V+ + + GA +IL +
Sbjct: 216 MISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNK 275
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ + L L + + YA G I A RD +S +I+G++ G +AL
Sbjct: 276 MTVNLILGT----ALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKAL 331
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
E F ++E G+ E+T VL+A S G ++ G
Sbjct: 332 EYFSRMEKAGLTPREITFTAVLSACSHGGLVERG 365
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD-LS 59
++ +Q G + ++ G++ G +D ++T S G A + + L
Sbjct: 119 LVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLD 178
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S + Y SG + AR + V+ MISGY++ F++A+E + L+S
Sbjct: 179 VVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQS 238
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
GVH +E MV V+A+ + GAL+ G+ N+ L TA+++MYA+
Sbjct: 239 EGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYAR 292
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+GY+Q+G + +AL ++ + + D T+ VL S I KE+ +
Sbjct: 213 IIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG 272
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+D Y SS YA S RI RL RD +S ++++GY Q GR+NEAL F
Sbjct: 273 IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFR 332
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + V V V+ A + L GK SNIF+ +A+++MY+K
Sbjct: 333 QMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390
>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Glycine max]
Length = 727
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISGY+Q G+ EAL F ++ + GV D + +V +L A + G I +++
Sbjct: 226 IISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMG 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ L S T+ YA G + +A+ + + AMISGY++ G EA+ F
Sbjct: 286 LEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFH 345
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ S + D VT+ + AS+ G+L+ + S+IF+ T++I+MYAK
Sbjct: 346 YMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAK 403
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EA+ F + S + D VT+ + AS+ G+ LA+ + + S+
Sbjct: 327 MISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSN 386
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y +S YA G + AR D V AMI GY G+ EA+ +
Sbjct: 387 YGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYH 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ GV ++VT + +L A + G + G
Sbjct: 447 VMKQAGVFPNDVTFIGLLTACNHSGLVKEG 476
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I YS+ + + +E + + GVH D T VL A + G I + ++
Sbjct: 125 IIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYG 184
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + YA G I +A R VS ++ISGY+Q G+ EAL F
Sbjct: 185 FGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFS 244
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ + GV D + +V +L A + L+ G+S
Sbjct: 245 QMRNNGVKPDWIALVSILRAYTDVDDLEQGRS 276
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA---SSGP--GAWILAKELQIE 55
MI G +Q G +A+ F +++ V D T+V V+ A S P WI +++
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD Y L++ YA GR+ +AR ++ AMI GY G A+E F
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++S+G+ +E T + VL+A S G +D G+
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGR 484
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKEL--QIE 55
MI GY+Q G EAL F ++ GV +V+++ L A G + EL +I
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + +++ + Y+ R+ LA R VS AMI G +Q G +A+ F
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352
Query: 107 KLESLGVHTDEVTMVVV---LAASSGPGALDF--GKS-------NIFLTTAIIEMYAK 152
+++ V D T+V V LA S P + G S ++++ TA+I+MYAK
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSG---------PGAWILAK 50
+++GY++ G A+E ++ E G D +T+V VL A + A+ +
Sbjct: 131 LVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRS 190
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
L+ +++++ L + Y G IR AR + VS AMI GY+Q G EA
Sbjct: 191 GLEELVNVATAILDA----YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREA 246
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
L F ++ GV +V+++ L A G LD G SN+ + A+I M
Sbjct: 247 LALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITM 306
Query: 150 YAK 152
Y+K
Sbjct: 307 YSK 309
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+Q G+ EA++ F ++E G+ +EVT+V VL A + G +L + + D S+
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH---DFSN 272
Query: 61 YSLSSKTSR--------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
S K R Y G + A R VS AMI+G + GR +AL
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F K+ + GV + VT + +L A S G ++ G+
Sbjct: 333 LFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ S +MI GY+Q G+ EA++ F ++E G+ +EVT+V VL A + G L G+
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267
Query: 138 ----------SNIFLTTAIIEMYAK 152
NI + +I+MY K
Sbjct: 268 HDFSNRSGYEKNIRVCNTLIDMYVK 292
>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
Length = 675
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IELDL 58
MI+GY + GR+ EALE F ++ V DE T+V V++A + G+ L +++ ++ D
Sbjct: 167 MITGYVENGRYEEALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDD 226
Query: 59 SSYSLSSK-------TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ SS Y+ G + A +D VS +I GY+ + EAL
Sbjct: 227 DDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEAL 286
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIE 148
F ++ G ++VT++ VL A + GA+D G+ + L T++I+
Sbjct: 287 LLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLID 346
Query: 149 MYAK 152
MYAK
Sbjct: 347 MYAK 350
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VT++ VL A + GA + + + + +D
Sbjct: 272 LIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKL 331
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
++++TS YA G I L R S AMI G++ GR N A +
Sbjct: 332 KGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDL 391
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ V D++T V +L+A S G LD G+
Sbjct: 392 FSRMRGNRVEPDDITFVGLLSACSHSGLLDLGR 424
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 32/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ +++ F E + ++ LG D +++ + G A+++ D SS
Sbjct: 70 LLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKV---FDASS 126
Query: 61 Y----SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ S ++ + YA G R AR D VS AMI+GY + GR+ EALE F +
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKE 186
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK----------------SNIFLTTAIIEMYA 151
+ V DE T+V V++A + G+++ G+ S++ + A+I++Y+
Sbjct: 187 MMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYS 246
Query: 152 K 152
K
Sbjct: 247 K 247
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA---SSGP--GAWILAKELQIE 55
MI G +Q G +A+ F +++ V D T+V V+ A S P WI +++
Sbjct: 334 MILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLH 393
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD Y L++ YA GR+ +AR ++ AMI GY G A+E F
Sbjct: 394 LDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFE 453
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++S+G+ +E T + VL+A S G +D G+
Sbjct: 454 EMKSIGIVPNETTFLSVLSACSHAGLVDEGR 484
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKEL--QIE 55
MI GY+Q G EAL F ++ GV +V+++ L A G + EL +I
Sbjct: 233 MIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIG 292
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + +++ + Y+ R+ LA R VS AMI G +Q G +A+ F
Sbjct: 293 LDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFT 352
Query: 107 KLESLGVHTDEVTMVVV---LAASSGPGALDF--GKS-------NIFLTTAIIEMYAK 152
+++ V D T+V V LA S P + G S ++++ TA+I+MYAK
Sbjct: 353 RMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 410
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSG---------PGAWILAK 50
+++GY++ G A+E ++ E G D +T+V VL A + A+ +
Sbjct: 131 LVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRS 190
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
L+ +++++ L + Y G IR AR + VS AMI GY+Q G EA
Sbjct: 191 GLEELVNVATAILDA----YCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREA 246
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
L F ++ GV +V+++ L A G LD G SN+ + A+I M
Sbjct: 247 LALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITM 306
Query: 150 YAK 152
Y+K
Sbjct: 307 YSK 309
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+Q G+ EA++ F ++E G+ +EVT+V VL A + G +L + + D S+
Sbjct: 216 MIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH---DFSN 272
Query: 61 YSLSSKTSR--------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
S K R Y G + A R VS AMI+G + GR +AL
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F K+ + GV + VT + +L A S G ++ G+
Sbjct: 333 LFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ S +MI GY+Q G+ EA++ F ++E G+ +EVT+V VL A + G L G+
Sbjct: 208 RNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRI 267
Query: 138 ----------SNIFLTTAIIEMYAK 152
NI + +I+MY K
Sbjct: 268 HDFSNRSGYEKNIRVCNTLIDMYVK 292
>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like, partial [Vitis vinifera]
Length = 621
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI Y + GR E F L G+ +E T VL A + A L K++ +I
Sbjct: 294 MIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIG 353
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D SS++ S+ Y G I+ AR D VS ++ISGY+Q G+ +EAL+ F
Sbjct: 354 FDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFE 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L G D +T V VL+A + G +D G
Sbjct: 414 LLLKSGTQPDHITFVGVLSACTHAGLVDKG 443
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
MI GYS+ G NEAL F ++++ V+ DEVTMV V++A + GA W+ A K
Sbjct: 204 MIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKG 263
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I A RD + AMI G + G AL
Sbjct: 264 ITVDLELS----TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVAL 319
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ F ++ L V + VT + VL+A + G ++ G+
Sbjct: 320 KLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGR 354
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 29 DEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80
+ T+ L A S G G + ++ + L+ S Y + + YA + LAR
Sbjct: 130 NSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVF 189
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+ + AMI GYS+ G NEAL F ++++ V+ DEVTMV V++A + GAL
Sbjct: 190 DGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGAL 249
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
D G+ ++ L+TA+I+MYAK
Sbjct: 250 DLGRWVHAFIDRKGITVDLELSTALIDMYAK 280
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-------KELQ 53
+I GY + R++E L F ++ V D VTMV V+ A + G W + +E +
Sbjct: 867 LICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENK 926
Query: 54 IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLAR---- 80
+E+D+ + S ++ Y +G + AR
Sbjct: 927 VEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFD 986
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S +MIS YSQAG+F +A+ F ++ V DE+T+ VL+A + GALD
Sbjct: 987 DMPHRDVISWTSMISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDV 1046
Query: 136 GK------------SNIFLTTAIIEMYAK 152
G+ ++I++ A+I+MY K
Sbjct: 1047 GEAVHEYIRKYDVNADIYVGNALIDMYCK 1075
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MIS YSQAG+F +A+ F ++ V DE+T+ VL+A + GA + + + + +
Sbjct: 999 MISSYSQAGQFGKAVRLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYD 1058
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y ++ Y G + RD VS ++I+G + G + AL F
Sbjct: 1059 VNADIYVGNALIDMYCKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFS 1118
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ GV T V VL A + G +D G
Sbjct: 1119 LMLREGVRPTHGTFVGVLLACAHAGVVDKG 1148
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA----SSGPGAWILAKELQIEL 56
MI G+SQ + EA+ + + S + + +T +L A S+ + A+ L++
Sbjct: 767 MIRGWSQTNQPIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSCTTVHARVLKLGF 826
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
D + ++ YA + AR D VS ++I GY + R++E L F +
Sbjct: 827 DSDLFVSNALIHGYAGFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEE 886
Query: 108 LESLGVHTDEVTMVVVLAASSGPGA-------LDFGKSN-----IFLTTAIIEMYAK 152
+ V D VTMV V+ A + G +++ + N ++L +I+MY +
Sbjct: 887 MRMADVKGDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGR 943
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 87/209 (41%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I GYSQ RF E L+ F + V D VTMV V+ A S G ++
Sbjct: 229 LICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKH 288
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGR-------FN 99
+D+ Y +S Y G + LAR + VS AM++GY+ AG FN
Sbjct: 289 VDIDVYLGNSLIDMYGRRGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFN 348
Query: 100 E------------------------ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
E AL+ F ++ V DE+T+ VL+A S G LD
Sbjct: 349 EMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDT 408
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G KS++++ A+I+MY K
Sbjct: 409 GQTVHEYMCRHDIKSDVYVGNALIDMYCK 437
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---L 56
+I G SQ+ NEA+ + L + G+ D +T + + A S + + ++ L
Sbjct: 127 LIRGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKL 186
Query: 57 DLSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
SY +S Y + G + A RD VS ++I GYSQ RF E L+ F
Sbjct: 187 GFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDLF 246
Query: 106 GKLESLGVHTDEVTMVVVLAASS---GPGALD---------FGKSNIFLTTAIIEMYAK 152
+ V D VTMV V+ A S G +D +++L ++I+MY +
Sbjct: 247 NLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGR 305
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA----KE 51
MI GYS+ G NEAL F ++++ V+ DEVTMV V++A + GA W+ A K
Sbjct: 201 MIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKG 260
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++L+LS ++ YA G I A RD + AMI G + G AL
Sbjct: 261 ITVDLELS----TALIDMYAKCGLIERAKGVFDAMAERDTKAWSAMIVGLAIHGLVEVAL 316
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ F ++ L V + VT + VL+A + G ++ G+
Sbjct: 317 KLFSRMLELKVRPNNVTFIGVLSACAHSGLVNEGR 351
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 29 DEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80
+ T+ L A S G G + ++ + L+ S Y + + YA + LAR
Sbjct: 127 NSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYVQTGLLNLYAKCEEVALARTVF 186
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+ + AMI GYS+ G NEAL F ++++ V+ DEVTMV V++A + GAL
Sbjct: 187 DGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACAKAGAL 246
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
D G+ ++ L+TA+I+MYAK
Sbjct: 247 DLGRWVHAFIDRKGITVDLELSTALIDMYAK 277
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ RF++A+E F +++S GV +E MV +L A Q ++ +
Sbjct: 179 LISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGR----CFDPYFQSKVGFNV 234
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+S YA G +R AR VS ++I+GYSQ G EAL F + L
Sbjct: 235 ILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDL 294
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G+ D+VT + V+ AS G G+S + + A++ MYAK
Sbjct: 295 GIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAK 347
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GYS + ++AL + ++ G D T VL A SG G+ + ++
Sbjct: 78 MIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG 137
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLARD-----PVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y + Y G + R+ D V+ ++ISG+ RF++A+E F
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS---NIFLTTAIIEMYAK 152
+++S GV +E MV +L A F N+ L T++I+MYAK
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCFDPYFQSKVGFNVILATSLIDMYAK 246
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 1 MISGYSQAGRFNEALEPF-GKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
MI+ Y+Q+G EALE F G + +GV + VT+ VL A + GA K + I++
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 1382
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEP 104
DL Y++ TS Y GR+ +A+ S AM++GY GR EAL+
Sbjct: 1383 DLE-YNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDI 1441
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K+ GV + +T V VLAA S G ++ G
Sbjct: 1442 FYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 1473
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKL--------ESLGVHTDEVTMVVVLTASS---------GP 43
MI+GY Q + + AL F + V D V MV VL+A S G
Sbjct: 1214 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 1273
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
+++ K + + + + + YA G+ +++ D +S +MI+ Y+Q
Sbjct: 1274 HGFVVKKGFDGSIGVGNTLMDA----YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQ 1329
Query: 95 AGRFNEALEPF-GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIF 141
+G EALE F G + +GV + VT+ VL A + GAL GK N+
Sbjct: 1330 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVC 1389
Query: 142 LTTAIIEMYAK 152
+ T+II+MY K
Sbjct: 1390 VGTSIIDMYCK 1400
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ VS AMI+GY + + EALE F ++++ + +E TMV ++ A + G L G+
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278
Query: 139 ------------NIFLTTAIIEMYAK 152
++L TA+I+MY+K
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSK 304
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI+GY + + EALE F ++++ + +E TMV ++ A + G L + ++
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC 287
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y ++ Y+ G I+ A + + +MI+ G EAL F
Sbjct: 288 IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFS 347
Query: 107 KLESLGVHTDEVTMVVVLAAS 127
++E + V D +T + VL A
Sbjct: 348 EMERVNVKPDAITFIGVLCAC 368
>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
Length = 1073
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+ GR EA + F +++ G+ ++ T + +L+A P A +++ + +
Sbjct: 172 MISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAG 231
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y S Y G + LAR + VS AMISGY Q G EAL F
Sbjct: 232 YESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFR 291
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
KL G+ ++V+ +L A + P L G + + + A+I MY++
Sbjct: 292 KLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSR 349
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D VS AMISGY+ GR EA + F +++ G+ ++ T + +L+A P AL+FG
Sbjct: 164 KDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSPIALEFGEQI 223
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+S++ ++TA+I MY K
Sbjct: 224 HSRIAKAGYESDVNVSTALINMYCK 248
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+ + R +AL+ F +++ GV+ D T L A + A K++ +L +
Sbjct: 676 MLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAG 735
Query: 61 YSLSSKTSR-----YAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ S Y+ G + L+RD S A+I+GY Q G+ N ALE +
Sbjct: 736 METDTRVSNSLIEMYSRCGCLCSAKQVFEKMLSRDINSWNALIAGYCQNGQGNIALEYYE 795
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG----ALDFGKS 138
+ + ++ T +L++ + G A DF +S
Sbjct: 796 LMLRASIVPNKATFTSILSSYAQLGEEEQAFDFLES 831
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 42/186 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWI-------- 47
MI+ Q G A + F K S G D+ T + VL A + G I
Sbjct: 575 MIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGG 634
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
K++++ L++ Y+ G +R A +D V AM++ Y+ + R
Sbjct: 635 FGKDIRV--------LTTLIKMYSKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRG 686
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAI 146
+AL+ F +++ GV+ D T L A + A++ GK ++ ++ ++
Sbjct: 687 QDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEHGKKIHAQLKEAGMETDTRVSNSL 746
Query: 147 IEMYAK 152
IEMY++
Sbjct: 747 IEMYSR 752
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 82/153 (53%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY+ G+ NEAL F ++ ++GV E T+V +L+A + GA L K L +
Sbjct: 269 MINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYIND 326
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++++S ++ YA G+I LA +D ++ +I+G + G EA +
Sbjct: 327 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQL 386
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ GV +++T V +L+A S G +D G+
Sbjct: 387 FKEMKEAGVEPNDITFVAILSACSHAGMVDEGQ 419
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG- 136
+ RD +S MI+GY+ G+ NEAL F ++ ++GV E T+V +L+A + GALD G
Sbjct: 259 VCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGL 318
Query: 137 -----------KSNIFLTTAIIEMYAK 152
+ N + TA+++MYAK
Sbjct: 319 HLHTYINDNRIEVNSIVGTALVDMYAK 345
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
++S +++ G F EAL G L + V +EVT+ VL A G W +E
Sbjct: 190 LLSAFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRRE 246
Query: 52 LQIELD-----LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ L L Y K + LARD VS MISG Q R +EALE F
Sbjct: 247 KELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFN 306
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+V + VL+A + GAL+ G+ ++ + T++++MY K
Sbjct: 307 AMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVK 364
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISG Q R +EALE F ++ GV D+V + VL+A + GA W+ +
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKG 347
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + +S Y G + A ++ S A+I+G++ GR EAL+ F
Sbjct: 348 IEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFD 407
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ + G+H +EVT + VL A G + G+ L T
Sbjct: 408 RMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMT 445
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS A++S +++ G F EAL G L + V +EVT+ VL A G GK+
Sbjct: 182 RDVVSWTALLSAFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAV 238
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ + A+++MY K
Sbjct: 239 HGWYFRREKELNLIVGNALLDMYVK 263
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL---AKELQI--E 55
MISGY Q G EA+ F +++ +GV + T V VL+A + GA+IL E +
Sbjct: 183 MISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNG 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL+ +S + Y G + A R+ V+ AMISGY G ++A+E F
Sbjct: 243 LDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFH 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ + +T V VL+A + G ++ G+
Sbjct: 303 EMRRNGLLPNSITFVAVLSACAHAGLVNEGR 333
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R V+ +MISGY Q G EA+ F +++ +GV + T V VL+A + GA G
Sbjct: 175 RSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWV 234
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T++I MY +
Sbjct: 235 HEYAVGNGLDLNVVLGTSLINMYTR 259
>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
Length = 644
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+GY+QAG EA F + G+ DE T+V +L A S G + +L +
Sbjct: 182 MINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLARD--- 81
+I+L L++ S +S A I ARD
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301
Query: 82 ------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-- 133
+S AMIS Y Q GRF+EAL+ + +++ LG+ DE T+ VL+A G L
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361
Query: 134 ----------DFGKSNIFLTTAIIEMYAK 152
+F + L ++++MYA+
Sbjct: 362 GKMIHDCIRDNFHNPGVALFNSLLDMYAR 390
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q GRF+EAL+ + +++ LG+ DE T+ VL+A G K + + +
Sbjct: 314 MISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNF 373
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G++ A ++ +S A+I + GR +AL F
Sbjct: 374 HNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFR 433
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ S DE+T V +L+A + G L+ G+ +++ +E YA M
Sbjct: 434 SMVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACM 486
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
+I Y + EAL + G+ +E T+ +L A + AW ++ + ++L
Sbjct: 81 LIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLG 140
Query: 58 L--SSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA +G + + R+ VS +MI+GY+QAG EA F
Sbjct: 141 FVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFE 200
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ DE T+V +L A S G L+FGK ++ L A+++MY K
Sbjct: 201 GMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGK 258
>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
Length = 644
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 89/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+GY+QAG EA F + G+ DE T+V +L A S G + +L +
Sbjct: 182 MINGYAQAGNTREACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRG 241
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLARD--- 81
+I+L L++ S +S A I ARD
Sbjct: 242 CRIDLILANALVDMYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFE 301
Query: 82 ------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-- 133
+S AMIS Y Q GRF+EAL+ + +++ LG+ DE T+ VL+A G L
Sbjct: 302 QIPEKSIISWNAMISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLAS 361
Query: 134 ----------DFGKSNIFLTTAIIEMYAK 152
+F + L ++++MYA+
Sbjct: 362 GKMIHDCIRDNFHNPGVALFNSLLDMYAR 390
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q GRF+EAL+ + +++ LG+ DE T+ VL+A G K + + +
Sbjct: 314 MISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNF 373
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G++ A ++ +S A+I + GR +AL F
Sbjct: 374 HNPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFR 433
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ DE+T V +L+A + G L+ G+ +++ +E YA M
Sbjct: 434 SMVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACM 486
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
+I Y + EAL + G+ +E T+ +L A + AW ++ + ++L
Sbjct: 81 LIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVVVKLG 140
Query: 58 L--SSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA +G + + R+ VS +MI+GY+QAG EA F
Sbjct: 141 FVGQVFVGNALLHSYASAGSLGDSRRFFDEMVDRNVVSWNSMINGYAQAGNTREACSLFE 200
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ DE T+V +L A S G L+FGK ++ L A+++MY K
Sbjct: 201 GMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVDMYGK 258
>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+GYS RF++A+ F ++ GV + VTM+ ++ +GP G + A ++
Sbjct: 130 LIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFG 189
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFG 106
LD + + Y G + AR P ++ AMISGY+Q G L+ +
Sbjct: 190 LDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYR 249
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+E G+ D VT+V VL++ + GA G+ N FL A+I MYA+
Sbjct: 250 KMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYAR 307
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G L+ + K+E G+ D VT+V VL++ + GA +E++ ++LS
Sbjct: 231 MISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSG 290
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + YA G + AR + +S A+I+GY G+ A++ F
Sbjct: 291 FGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFD 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ S D V VL+A S G + G
Sbjct: 351 EMISSDELPDGAAFVSVLSACSHAGLTEKG 380
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 79 ARDPVSC-KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+R+ C A+I+GYS RF++A+ F ++ GV + VTM+ ++ +GP L FG
Sbjct: 120 SRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGT 179
Query: 138 S 138
S
Sbjct: 180 S 180
>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 690
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY G + +A++ + ++ S+GV D VT VL+ S A L K QI L +S
Sbjct: 380 MISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAA--LEKGKQIHLSISE 437
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S+ Y+ G ++ A +D VS MIS Y G+ EAL
Sbjct: 438 SRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYH 497
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ GV D VT + VL+A G +D G
Sbjct: 498 FDEMQKFGVKPDGVTFLAVLSACGHAGLIDEG 529
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GY G +E ++ G + T+ +L A S G ++ ++
Sbjct: 279 MIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSV 338
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPV-SCKAMISGYSQAGRFNEALEPFG 106
+D Y S Y G ++LA +D V S MISGY G + +A++ +
Sbjct: 339 VDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYD 398
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S+GV D VT VL+ S AL+ GK ++ L +A+++MY+K
Sbjct: 399 QMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 456
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++SGYS+ F++ L+ F +L + + D T V+ A G L + + + S
Sbjct: 76 LVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREFLGRMIHTVVVKS 135
Query: 60 SYSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ SS YA + RD S +IS + Q G +ALE F
Sbjct: 136 GHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELF 195
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G++E + V++ V ++A S L+ GK + ++ +A+++MY +
Sbjct: 196 GRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGR 254
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIEL 56
+ Y+Q G + + G++ LG+ D+ ++ + G A+ + ++EL
Sbjct: 133 VFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARRVFDGKKLEL 192
Query: 57 -DLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
D +++S YA G I + R VS +MISGY + G+ EALE F
Sbjct: 193 YDHDVVAINSMIMGYAKCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFN 252
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K++ G E TMV +L A + GAL GK N+ + TAII+MY K
Sbjct: 253 KMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCK 310
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + G+ EALE F K++ G E TMV +L A + GA W+ +
Sbjct: 234 MISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNH 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSC-KAMISGYSQAGRFNEALEPFG 106
+L+ +++ Y G + A R +SC ++I G + G EA E F
Sbjct: 294 FELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRGLSCWNSIIIGLAMNGHEREAFEFFS 353
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALD 134
KLES + D V+ + VL A GA++
Sbjct: 354 KLESSKLLKPDSVSFIGVLTACKHLGAIN 382
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 78/152 (51%), Gaps = 17/152 (11%)
Query: 1 MISGYSQAGRFNEALEPF-GKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
MI+ Y+Q+G EALE F G + +GV + VT+ VL A + GA K + I++
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKM 2255
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEP 104
DL Y++ TS Y GR+ +A+ S AM++GY GR EAL+
Sbjct: 2256 DLE-YNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDI 2314
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K+ GV + +T V VLAA S G ++ G
Sbjct: 2315 FYKMVRAGVKPNYITFVSVLAACSHAGLVEEG 2346
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 43/191 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKL--------ESLGVHTDEVTMVVVLTASS---------GP 43
MI+GY Q + + AL F + V D V MV VL+A S G
Sbjct: 2087 MITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGV 2146
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
+++ K + + + + + YA G+ +++ D +S +MI+ Y+Q
Sbjct: 2147 HGFVVKKGFDGSIGVGNTLMDA----YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQ 2202
Query: 95 AGRFNEALEPF-GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIF 141
+G EALE F G + +GV + VT+ VL A + GAL GK N+
Sbjct: 2203 SGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVC 2262
Query: 142 LTTAIIEMYAK 152
+ T+II+MY K
Sbjct: 2263 VGTSIIDMYCK 2273
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ VS AMI+GY + + EALE F ++++ + +E TMV ++ A + G L G+
Sbjct: 219 SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278
Query: 139 ------------NIFLTTAIIEMYAK 152
++L TA+I+MY+K
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSK 304
Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI+GY + + EALE F ++++ + +E TMV ++ A + G L + ++
Sbjct: 228 MINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNC 287
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y ++ Y+ G I+ A + + +MI+ G EAL F
Sbjct: 288 IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFS 347
Query: 107 KLESLGVHTDEVTMVVVLAAS 127
++E + V D +T + VL A
Sbjct: 348 EMERVNVKPDAITFIGVLCAC 368
>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
Length = 691
Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI+GY + + EALE F ++ V DE T+V VL+A + G+ L +E+ +D
Sbjct: 186 MITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHH 245
Query: 58 ---LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
S +++ Y+ G + +A +D VS +I GY+ + EAL F
Sbjct: 246 GFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLF 305
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYA 151
++ G ++VTM+ VL A + GA+D G+ +++ L T++I+MYA
Sbjct: 306 QEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYA 365
Query: 152 K 152
K
Sbjct: 366 K 366
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
+I GY+ + EAL F ++ G ++VTM+ VL A + GA + + + + +D
Sbjct: 288 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRL 347
Query: 60 ------SYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEP 104
S +S YA G I A S AMI G++ GR N A +
Sbjct: 348 KGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDL 407
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ G+ D++T+V +L+A S G LD G+ +IF
Sbjct: 408 FSRMRKNGIEPDDITLVGLLSACSHSGLLDLGR-HIF 443
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ +++ F E + ++ LG D +++ + G A+++ D SS
Sbjct: 89 LLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKV---FDXSS 145
Query: 61 Y----SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
S ++ + YA G +R AR D VS AMI+GY + + EALE F +
Sbjct: 146 QRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKE 205
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
+ V DE T+V VL+A + G+++ G+ S++ + A I +Y+K
Sbjct: 206 MMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSK 263
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 19/138 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ GR N A + F ++ G+ D++T+V +L+A S G LDL
Sbjct: 391 MIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGL----------LDLGR 440
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ S T Y + ++ + C MI AG F EA E + + + D V
Sbjct: 441 HIFKSVTQDYNITPKL----EHYGC--MIDLLGHAGLFKEAEEI---IHMMPMEPDGVIW 491
Query: 121 VVVLAASSGPGALDFGKS 138
+L A G L+ +S
Sbjct: 492 CSLLKACKMHGNLELAES 509
>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Vitis vinifera]
Length = 629
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+GYS RF++A+ F ++ GV + VTM+ ++ +GP G + A ++
Sbjct: 130 LIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFG 189
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFG 106
LD + + Y G + AR P ++ AMISGY+Q G L+ +
Sbjct: 190 LDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYR 249
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+E G+ D VT+V VL++ + GA G+ N FL A+I MYA+
Sbjct: 250 KMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYAR 307
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G L+ + K+E G+ D VT+V VL++ + GA +E++ ++LS
Sbjct: 231 MISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSG 290
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + YA G + AR + +S A+I+GY G+ A++ F
Sbjct: 291 FGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFD 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ S D V VL+A S G + G
Sbjct: 351 EMISSDELPDGAAFVSVLSACSHAGLTEKG 380
Score = 40.0 bits (92), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
V A+I+GYS RF++A+ F ++ GV + VTM+ ++ +GP L FG S
Sbjct: 125 VCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTS 180
>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
Length = 601
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+ Y+ G F EAL F ++ G + +T+ V + + G AW+ ++
Sbjct: 181 MIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEED 240
Query: 52 LQ--------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
LQ +E+ + ++ + R RD V+ MI+GYS GR +E+LE
Sbjct: 241 LQNVIVHTALMEMYVKCRAIDEARREFDRMPR----RDVVAWSTMIAGYSHNGRPHESLE 296
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++++ +EVT+V VL+A + G+ + G+ +L +A+I+MY
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYT 356
Query: 152 K 152
K
Sbjct: 357 K 357
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y+ SG + AR S +MI+ Y+ G F EAL F ++ G + +T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213
Query: 121 VVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
V + + G L+ G+ N+ + TA++EMY K
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVK 256
>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
gi|219884683|gb|ACL52716.1| unknown [Zea mays]
gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
Length = 601
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+ Y+ G F EAL F ++ G + +T+ V + + G AW+ ++
Sbjct: 181 MIACYAHGGEFQEALTLFDQMLREGASPNAITITTVFSICAKTGDLETGRRAKAWVSEED 240
Query: 52 LQ--------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
LQ +E+ + ++ + R RD V+ MI+GYS GR +E+LE
Sbjct: 241 LQNVIVHTALMEMYVKCRAIDEARREFDRMPR----RDVVAWSTMIAGYSHNGRPHESLE 296
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++++ +EVT+V VL+A + G+ + G+ +L +A+I+MY
Sbjct: 297 LFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQTLPLTSYLGSALIDMYT 356
Query: 152 K 152
K
Sbjct: 357 K 357
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 20/103 (19%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y+ SG + AR S +MI+ Y+ G F EAL F ++ G + +T+
Sbjct: 154 YSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGASPNAITI 213
Query: 121 VVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
V + + G L+ G+ N+ + TA++EMY K
Sbjct: 214 TTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVK 256
>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
Length = 495
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
M++ Y+Q G ++AL F K+E GV +EVT + VL A + A + K+
Sbjct: 47 MVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKK 106
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRIR---LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L + + + K SR + ++ + +D V+ MIS Y+Q G EA++ FG
Sbjct: 107 LDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFG 166
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV +E+ ++ +L A S GAL GK +++ +I+MY K
Sbjct: 167 YMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGK 224
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ ++ G +A F +++ GV D VT V +L A S GA + + +
Sbjct: 249 MLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEG 308
Query: 61 -----YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y +S Y G ++ AR + ++ MI+ Q + EALE F
Sbjct: 309 FQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFE 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E GV D+V + ++ + S G ++ G+
Sbjct: 369 EMEKAGVQPDQVAFLSIIHSCSHSGLVEEGR 399
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ +S M++ Y+Q G ++AL F K+E GV +EVT + VL A + A++ G+
Sbjct: 39 RNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMI 98
Query: 139 -----------NIFLTTAIIEMYAK 152
+ + TA++ MY K
Sbjct: 99 HRLVARKKLDVGLIVGTALVGMYGK 123
>gi|255549315|ref|XP_002515711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545148|gb|EEF46658.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 462
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISGY + G+ E L F ++ +G+ D++T++ +L + A KE+
Sbjct: 215 MISGYLKNGKPREVLAIFNLMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRNR 274
Query: 54 ------------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEA 101
IE+ S+ + H +D VS +MISGY++ E+
Sbjct: 275 HSVFNHFLINSLIEMYCKCNSMVDARKLFEHMA----WKDTVSWNSMISGYARNRDAFES 330
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
L F ++ G D++T + VL A A++FG+S IF+ TA+I+M
Sbjct: 331 LRVFCRMVLEGTKPDKITFITVLGACEQITAMEFGRSVHSYLSKKGFSATIFVATALIDM 390
Query: 150 YAK 152
YAK
Sbjct: 391 YAK 393
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKELQIE- 55
MI GY+ G +AL + + S G D+ T V+ A W + E+ I
Sbjct: 114 MIRGYACNGFPVKALFLYQDMSSFGQKADKFTYPFVIKACGDLRDVEFGWRVHCEVVITG 173
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+L Y +S + Y+ G +++AR D S MISGY + G+ E L F
Sbjct: 174 FNLDIYVGNSLLAMYSKFGNMKMARMVFDRMPVRDLTSWNTMISGYLKNGKPREVLAIFN 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
++ +G+ D++T++ +L + A GK N FL ++IEMY K
Sbjct: 234 LMKQIGLSVDDMTLIGLLCTCAELFAEKQGKEIHGYVVRNRHSVFNHFLINSLIEMYCK 292
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 82/178 (46%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
++S +++ G F EAL G L + V +EVT+ VL A G W +E
Sbjct: 190 LLSAFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAVHGWYFRRE 246
Query: 52 LQIELD-----LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ L L Y K + LARD VS MISG Q R +EALE F
Sbjct: 247 KELNLIVGNALLDMYVKCEKLDLARRVFDMLLARDIVSWTVMISGLVQCKRPSEALEVFN 306
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D+V + VL+A + GAL+ G+ ++ + T++++MY K
Sbjct: 307 AMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVK 364
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISG Q R +EALE F ++ GV D+V + VL+A + GA W+ +
Sbjct: 288 MISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRWVHEYIERKG 347
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + +S Y G + A ++ S A+I+G++ GR EAL+ F
Sbjct: 348 IEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMPLKNVSSWNALINGFALHGRGREALDCFD 407
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ + G+H +EVT + VL A G + G+ L T
Sbjct: 408 RMVASGLHPNEVTFITVLGACCHSGLVQEGRQLFELMT 445
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 15/85 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS A++S +++ G F EAL G L + V +EVT+ VL A G GK+
Sbjct: 182 RDVVSWTALLSAFTRGGMFMEAL---GVLAEMDVTPNEVTLASVLVACGNLGTARAGKAV 238
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ + A+++MY K
Sbjct: 239 HGWYFRREKELNLIVGNALLDMYVK 263
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY++ G + +ALE F +++ +G+ DE+++V VL A + GA L K + D +
Sbjct: 220 IVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYADKAG 279
Query: 61 Y-----SLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I RL RD +S MI G + GR +EA+E F
Sbjct: 280 FLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQ 339
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + + +T V +L+A + G L+ G
Sbjct: 340 EMQKAKIEPNIITFVGLLSACAHAGLLNEG 369
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 12/81 (14%)
Query: 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------ 137
S A++SGY++ G + +ALE F +++ +G+ DE+++V VL A + GAL+ GK
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALELGKWIHFYA 275
Query: 138 ------SNIFLTTAIIEMYAK 152
NI + A+IEMYAK
Sbjct: 276 DKAGFLRNICVCNALIEMYAK 296
>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
[Vitis vinifera]
gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
Length = 617
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISG+SQ G+ EA + F K++S GV ++ +L A S A KE+ +
Sbjct: 341 MISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTN 400
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALEP 104
+D + ++ Y G LAR DP AMISGY + G++ A E
Sbjct: 401 IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEI 460
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ V + T+V +L+ S G +D G
Sbjct: 461 FNQMQEEKVQPNSATLVSILSVCSHTGEIDRG 492
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP----GAWILAKELQIELD 57
ISG+S+ G F EAL F ++ + VT+ VL A + LA +L +E D
Sbjct: 106 ISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESD 165
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK- 107
+ Y ++ + Y++ G + LA ++ VS A ISG Q G + + F
Sbjct: 166 I--YVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL 223
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
LES G + VT+V +L+A S + FG+ + + TA+++MY+K
Sbjct: 224 LESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSK 280
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L D + MISG+SQ G+ EA + F K++S GV ++ +L A S AL GK
Sbjct: 331 LEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGK 390
Query: 138 --------SNI----FLTTAIIEMYAK 152
+NI F++TA+I+MY K
Sbjct: 391 EIHGHTIRTNIDTDEFISTALIDMYMK 417
Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSL 63
G + EAL + KL S V + T +L AS+ + + + L +L L Y+
Sbjct: 12 GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 71
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
++ Y + A R+ S ISG+S+ G F EAL F ++
Sbjct: 72 TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 131
Query: 115 TDEVTMVVVLAASSGPG--------ALDFG-KSNIFLTTAIIEMYAK 152
+ VT+ VL A + A+ G +S+I++ TA++ MY+
Sbjct: 132 PNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSN 178
>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
Length = 495
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M++ Y+Q G ++AL F K+E GV +EVT + VL A + G I + +
Sbjct: 47 MVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKK 106
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD+ ++ Y R+ AR D V+ MIS Y+Q G EA++ FG
Sbjct: 107 LDVGLIVGTALVGMYGKCSRLIEARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFG 166
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV +E+ ++ +L A S GAL GK +++ +I+MY K
Sbjct: 167 YMNLDGVRPNEIILMSILGACSSAGALAEGKMTHELVVICGFGADVSTGNTLIKMYGK 224
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ ++ G +A F +++ GV D VT V +L A S GA + + +
Sbjct: 249 MLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEG 308
Query: 61 -----YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y +S Y G ++ AR + ++ MI+ Q + EALE F
Sbjct: 309 FQSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFE 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E GV D+V + ++ + S G ++ G+
Sbjct: 369 EMEKAGVQPDQVAFLSIIHSCSHSGLVEEGR 399
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S M++ Y+Q G ++AL F K+E GV +EVT + VL A + A++ G+
Sbjct: 39 RNVISWSTMVAAYAQRGDHDQALVLFQKMEEEGVEPNEVTFLSVLDACANAEAVEQGEMI 98
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ + TA++ MY K
Sbjct: 99 HRLAARKKLDVGLIVGTALVGMYGK 123
>gi|302791828|ref|XP_002977680.1| hypothetical protein SELMODRAFT_51483 [Selaginella moellendorffii]
gi|300154383|gb|EFJ21018.1| hypothetical protein SELMODRAFT_51483 [Selaginella moellendorffii]
Length = 571
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA--SSGPGAWILAKELQIELDL 58
M++ +AGR ++AL F +E GV D + + V+ A S+ WI ++ D
Sbjct: 203 MMAAMVRAGRHDDALRLFRDMEDDGVEPDSIAFITVINACSSAATARWIHGCIIRGGCDS 262
Query: 59 SSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ ++ YA G ++ A RD VS MIS +++ GR ++ F ++
Sbjct: 263 DTAVSNAIIRAYARCGSLKEAYRTFVEIKERRDHVSWTTMISAFAEFGRIKRCVQLFREM 322
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
GV +EVT++ V+ A +G A+ G +S+ + TA+++MY K
Sbjct: 323 LLEGVRANEVTLITVVNACAGASAIKEGRWIHDCVIGYQLERSSSMVATALLDMYGK 379
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MIS +++ GR ++ F ++ GV +EVT++ V+ A +G G WI + +
Sbjct: 302 MISAFAEFGRIKRCVQLFREMLLEGVRANEVTLITVVNACAGASAIKEGRWIHDCVIGYQ 361
Query: 56 LDLSSYSLSSKT-SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ SS +++ Y G + +A D VS ++I+ +Q G + A F
Sbjct: 362 LERSSSMVATALLDMYGKCGSLEVAARIFGELEQPDVVSWTSIIAATAQNGDGSSAARLF 421
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV +VT V V+AA S G +D GK
Sbjct: 422 CAMQLEGVRPVDVTFVSVVAACSHAGLVDLGK 453
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------- 137
AMI+GY++ G F+ A++ F ++E V D++T V VL A L+ G+
Sbjct: 6 AMITGYAKHGDFSRAIQFFAEMERNHVLPDKITYVAVLGAIQD---LEQGRRIHVRIQET 62
Query: 138 ---SNIFLTTAIIEMYA 151
+++ + A+++MYA
Sbjct: 63 GYDTDLVVANALMKMYA 79
>gi|347954532|gb|AEP33766.1| organelle transcript processing 82, partial [Lepidium virginicum]
Length = 464
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I G++ + EAL F ++ G ++VTM+ VL+A + GA + + + + +D
Sbjct: 277 LIGGHTHMNLYKEALFLFQEMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRL 336
Query: 58 ---LSSYSL-SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+S SL +S YA G I LAR S AMI G++ G+ N A +
Sbjct: 337 KGVTNSSSLRTSLIDMYAKCGDIEAASQVFDSMLARSLSSWNAMIFGFAMHGKANAAFDL 396
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F K+ G+ D++T V +L+A S G LD G+ +IF
Sbjct: 397 FSKMRKSGIEPDDITFVGLLSACSHSGMLDLGR-HIF 432
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + + EALE + ++ V DE TMV V++A + L +++ ++
Sbjct: 176 MISGYVETFNYKEALELYKEMVKTNVKPDESTMVTVVSACAQSSNIELGRQVHSLIEDHG 235
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I G++ + EAL F
Sbjct: 236 FGSNLKVVNALMDMYSKCGEMETACRLFQGLVNKDAISWNTLIGGHTHMNLYKEALFLFQ 295
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
++ G ++VTM+ VL+A + GA+D G+ ++ L T++I+MYAK
Sbjct: 296 EMLRSGESPNDVTMLSVLSACAHLGAIDIGRWIHVYIDKRLKGVTNSSSLRTSLIDMYAK 355
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q GR +A + F + H V+ ++T + G A++L E+
Sbjct: 114 LISMYAQNGRLEDAHKVFDR----SSHRHVVSYTALITGYASRGYTKSARKLFDEI---- 165
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
L +D VS AMISGY + + EALE + ++ V DE TM
Sbjct: 166 -----------------LVKDIVSWNAMISGYVETFNYKEALELYKEMVKTNVKPDESTM 208
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + ++ G+ SN+ + A+++MY+K
Sbjct: 209 VTVVSACAQSSNIELGRQVHSLIEDHGFGSNLKVVNALMDMYSK 252
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ G+ N A + F K+ G+ D++T V +L+A S G LDL
Sbjct: 380 MIFGFAMHGKANAAFDLFSKMRKSGIEPDDITFVGLLSACSHSGM----------LDLGR 429
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEA 101
+ SS T Y +I + C MI Q F EA
Sbjct: 430 HIFSSMTQDY----KITPKLEHYGC--MIDLLGQCALFKEA 464
>gi|302795666|ref|XP_002979596.1| hypothetical protein SELMODRAFT_51482 [Selaginella moellendorffii]
gi|300152844|gb|EFJ19485.1| hypothetical protein SELMODRAFT_51482 [Selaginella moellendorffii]
Length = 571
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA--SSGPGAWILAKELQIELDL 58
M++ +AGR ++AL F +E GV D + + V+ A S+ WI ++ D
Sbjct: 203 MMAAMVRAGRHDDALRLFRDMEDDGVEPDSIAFITVINACSSAATARWIHGCIIRGGCDS 262
Query: 59 SSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ ++ YA G ++ A RD VS MIS +++ GR ++ F ++
Sbjct: 263 DTAVSNAIIRAYARCGSLKEAYRTFVEIKERRDHVSWTTMISAFAEFGRIKRCVQLFREM 322
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
GV +EVT++ V+ A +G A+ G +S+ + TA+++MY K
Sbjct: 323 LLEGVRANEVTLITVVNACAGASAIKEGRWVHDCVIGYQLERSSSMVATALLDMYGK 379
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 20/172 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA----SSGPGAWILAKELQIEL 56
MI+GY++ G F+ A++ F ++E V D++T V VL A G + +E +
Sbjct: 7 MITGYAKHGDFSRAIQFFAEMERNHVLPDKITYVAVLGAIQDLEQGRRIHVRIQETGYDT 66
Query: 57 DL----SSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
DL + + + S A + R+ A RD VS ++I+ ++AG F A+ F +++
Sbjct: 67 DLVVANALMKMYAACSSLADATRVFEAMDHRDVVSWTSIIAANARAGDFPAAMGLFRRMQ 126
Query: 110 SLGVHTDEVTMVVVLAASSGPG--------ALDFG-KSNIFLTTAIIEMYAK 152
G + +T++ +LA PG A G +S++ + AI+ M+AK
Sbjct: 127 LQGTRPNRITLLELLAWCDDPGEGAAIHERAFASGLRSDVPVCNAILNMHAK 178
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MIS +++ GR ++ F ++ GV +EVT++ V+ A +G G W+ + +
Sbjct: 302 MISAFAEFGRIKRCVQLFREMLLEGVRANEVTLITVVNACAGASAIKEGRWVHDCVIGYQ 361
Query: 56 LDLSSYSLSSKT-SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ SS +++ Y G + +A D VS ++I+ +Q G + A F
Sbjct: 362 LERSSSMVATALLDMYGKCGSLEVAARIFGELEQPDVVSWTSIIAATAQNGDGSSAARLF 421
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV +VT V V+AA S G +D GK
Sbjct: 422 CAMQLEGVRPVDVTFVSVVAACSHAGMVDLGK 453
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 15/77 (19%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------- 137
AMI+GY++ G F+ A++ F ++E V D++T V VL A L+ G+
Sbjct: 6 AMITGYAKHGDFSRAIQFFAEMERNHVLPDKITYVAVLGAIQD---LEQGRRIHVRIQET 62
Query: 138 ---SNIFLTTAIIEMYA 151
+++ + A+++MYA
Sbjct: 63 GYDTDLVVANALMKMYA 79
>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Glycine max]
Length = 676
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I GY ++G F EAL F L +G+ D T+V +L A S G WI +
Sbjct: 174 IICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESG 233
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S YA G + AR D V A+I GY+ G EAL+ F
Sbjct: 234 SVGNVFVATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFF 293
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ V D MV V +A S GAL+ G SN L TA+I+ YAK
Sbjct: 294 EMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAK 351
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------GPGAWILAKELQI 54
+I G F +A+ + + G D T VL A + G + + ++
Sbjct: 72 LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
D + + Y+ +G + AR + VS A+I GY ++G F EAL F
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L +G+ D T+V +L A S G L G+ N+F+ T++++MYAK
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAK 250
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I GY+ G EAL+ F +++ V D MV V +A S GA L + +D
Sbjct: 275 LIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSACSRLGALELGNWARGLMDGDE 334
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LS+ L + YA G + A+ D V A+ISG + G A FG
Sbjct: 335 FLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFG 394
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ +G+ D T V +L + G +D G S++F T IE Y M
Sbjct: 395 QMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSVFSVTPTIEHYGCM 447
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISG+++ G EA + ++E+ G+ D+ T++ +L A + G +L K++ +I
Sbjct: 288 IISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIR 347
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S ++ YA GR+ A RD VS M+ G + G +A++ F
Sbjct: 348 IKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFS 407
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ G D+VT++ +L A + G +D G S
Sbjct: 408 KMQQEGFKPDKVTLIAILCACTHAGFVDQGLS 439
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 80/174 (45%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MI G +AG A + F ++ D V+ +L G A L ++ + +
Sbjct: 195 MIGGLVKAGDLGRARKLFDEM----AERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERN 250
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S S+ S Y +G + +AR + V+ +ISG+++ G EA + ++E+
Sbjct: 251 VVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEA 310
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
G+ D+ T++ +LAA + G L G K ++ ++ A+++MYAK
Sbjct: 311 AGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAK 364
>gi|302813230|ref|XP_002988301.1| hypothetical protein SELMODRAFT_127658 [Selaginella moellendorffii]
gi|300144033|gb|EFJ10720.1| hypothetical protein SELMODRAFT_127658 [Selaginella moellendorffii]
Length = 479
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ +SQ G +AL F ++ G+H D ++ V L A + A K L EL L+S
Sbjct: 75 LLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLAS 134
Query: 61 YSL-------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S+ ++ + YA GR+ AR D + AM+ Y+Q+GR +EA +
Sbjct: 135 QSVFVEASLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNAMLGAYAQSGRASEAADL 194
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F + G+H D VT V +++A S G LD G
Sbjct: 195 FQRAILSGIHPDAVTFVSIVSACSHAGLLDLG 226
Score = 39.7 bits (91), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD +S A+++ +SQ G +AL F ++ G+H D ++ V L A + AL GK
Sbjct: 67 RDVISWNALLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLL 126
Query: 138 --------SNIF----LTTAIIEMYAK 152
++F L TA++ YAK
Sbjct: 127 HEELLLASQSVFVEASLATALVNFYAK 153
>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Brachypodium distachyon]
Length = 552
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 78/157 (49%), Gaps = 15/157 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY QAG+F EALE F +++ V DE TMV V+TA + GA W +
Sbjct: 226 MIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHG 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ ++ Y+ G I+ A RD + A+I G + G EA+ F
Sbjct: 286 IKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFY 345
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
++ + DEVT + VL A + G +D G+ + FL+
Sbjct: 346 RMLRVFEAPDEVTFIGVLTACTHAGLVDKGR-DFFLS 381
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 18/132 (13%)
Query: 39 ASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRL------ARDPVSCKAMISGY 92
S AW L + +++ +S S+ S R + R RD VS AMI GY
Sbjct: 171 CSEMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGY 230
Query: 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNI 140
QAG+F EALE F +++ V DE TMV V+ A + GAL+ G K +
Sbjct: 231 VQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDT 290
Query: 141 FLTTAIIEMYAK 152
F+ A+++MY+K
Sbjct: 291 FVGNALVDMYSK 302
>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
Length = 787
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+IS YS G+ EAL F +++ GV + T+V L A G I A L+
Sbjct: 83 IISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSN 142
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y ++ + + G++ A +D ++ +MI+G++Q G +NEAL+ F
Sbjct: 143 QVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFC 202
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L+ + DEV+++ +LAAS G L GK SN+ + +I+MY+K
Sbjct: 203 GLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSK 260
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+G++Q G +NEAL+ F L+ + DEV+++ +L AS G + KE+
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + + SK A++G + + +D +S +I+ Y+Q EAL+
Sbjct: 244 LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLR 303
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYA 151
K+++ G+ D + + L A SG L K S++ + II++YA
Sbjct: 304 KVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLMMQNMIIDVYA 359
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Y+Q EAL+ K+++ G+ D + + L A SG AKE+ ++
Sbjct: 285 VIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRG 344
Query: 58 LSSYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LS + + YA G I A +D VS +MIS Y G NEAL F
Sbjct: 345 LSDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYL 404
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V D +T+V +L+A++ AL+ GK
Sbjct: 405 MKETSVEPDSITLVSILSAAASLSALNKGK 434
Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MIS Y G NEAL F ++ V D +T+V +L+A++ A KE+ +
Sbjct: 385 MISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKG 444
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
L +++S YA G + A C MI+ Y GR A+E F
Sbjct: 445 FMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFS 504
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E + D +T + +L A S G ++ GK
Sbjct: 505 IMEDQKLIPDHITFLALLYACSHSGLINEGK 535
Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 63/159 (39%), Gaps = 27/159 (16%)
Query: 21 LESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGR 75
+ LGV D T VL A GA I ++ D + +S S YA
Sbjct: 1 MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60
Query: 76 IRLAR----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125
I AR D VS ++IS YS G+ EAL F +++ GV + T+V L
Sbjct: 61 ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120
Query: 126 ASSGPGALDFG--------KSN----IFLTTAIIEMYAK 152
A G KSN +++ A++ M+ +
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVR 159
>gi|302756243|ref|XP_002961545.1| hypothetical protein SELMODRAFT_21801 [Selaginella moellendorffii]
gi|300170204|gb|EFJ36805.1| hypothetical protein SELMODRAFT_21801 [Selaginella moellendorffii]
Length = 520
Score = 66.2 bits (160), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+++G +ALE F K++ H D++T+ VL A + K + +
Sbjct: 288 MIMGYARSGHIQDALEIFSKMD----HPDKITIAQVLDAYADLACLSQCKAAHRDFVSPN 343
Query: 61 YSLSSKT-------SRYAHSG----------RIRL-ARDPVSCKAMISGYSQAGRFNEAL 102
L S+T YA G R+ L +R+ VS AMIS Y+Q GR +E++
Sbjct: 344 QELESETMVANALVHMYAKCGSLDEARRVFDRMSLQSRNIVSWTAMISAYAQHGRSSESM 403
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
E F +++ GV ++VT + +L++ S G +D
Sbjct: 404 ELFQRMQQRGVEPNQVTFISILSSCSHSGLID 435
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 77/184 (41%), Gaps = 36/184 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y++ EAL K++ G D T+ VLTA + L + + +S
Sbjct: 183 MVWAYAETSNPEEALFVLKKMDLEGGKADTFTLATVLTACATSCEHALLQTSFLHDRATS 242
Query: 61 YSLSSK-------TSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEAL 102
L S + Y+ S R+ LAR D V +MI GY+++G +AL
Sbjct: 243 LGLGSDPVVVAALINSYSKSQRLGLARSAFEGLPTDKRDAVVWSSMIMGYARSGHIQDAL 302
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGAL--------DFGKSN------IFLTTAIIE 148
E F K++ H D++T+ VL A + L DF N + A++
Sbjct: 303 EIFSKMD----HPDKITIAQVLDAYADLACLSQCKAAHRDFVSPNQELESETMVANALVH 358
Query: 149 MYAK 152
MYAK
Sbjct: 359 MYAK 362
>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
Length = 677
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISG+SQ G+ EA + F K++S GV ++ +L A S A KE+ +
Sbjct: 401 MISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTN 460
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALEP 104
+D + ++ Y G LAR DP AMISGY + G++ A E
Sbjct: 461 IDTDEFISTALIDMYMKCGHSYLARRVFCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEI 520
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ V + T+V +L+ S G +D G
Sbjct: 521 FNQMQEEKVQPNSATLVSILSVCSHTGEIDRG 552
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP----GAWILAKELQIELD 57
ISG+S+ G F EAL F ++ + VT+ VL A + LA +L +E D
Sbjct: 166 ISGFSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPACASVELDGQVHCLAIKLGVESD 225
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK- 107
+ Y ++ + Y++ G + LA ++ VS A ISG Q G + + F
Sbjct: 226 I--YVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL 283
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
LES G + VT+V +L+A S + FG+ + + TA+++MY+K
Sbjct: 284 LESSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIEINFDTMVGTALVDMYSK 340
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L D + MISG+SQ G+ EA + F K++S GV ++ +L A S AL GK
Sbjct: 391 LEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGK 450
Query: 138 --------SNI----FLTTAIIEMYAK 152
+NI F++TA+I+MY K
Sbjct: 451 EIHGHTIRTNIDTDEFISTALIDMYMK 477
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 23/167 (13%)
Query: 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSL 63
G + EAL + KL S V + T +L AS+ + + + L +L L Y+
Sbjct: 72 GFYREALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAA 131
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
++ Y + A R+ S ISG+S+ G F EAL F ++
Sbjct: 132 TALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFR 191
Query: 115 TDEVTMVVVLAASSGPG--------ALDFG-KSNIFLTTAIIEMYAK 152
+ VT+ VL A + A+ G +S+I++ TA++ MY+
Sbjct: 192 PNSVTIASVLPACASVELDGQVHCLAIKLGVESDIYVATAVVTMYSN 238
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 85/181 (46%), Gaps = 36/181 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW--------ILAKEL 52
+ISG+ +AG F+EA+ F +++ V T+V VL A + G ++ +
Sbjct: 177 LISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRF 233
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
++ L L + L Y +G A RD VS MI+G Q+ ++LE
Sbjct: 234 KVNLVLGNAMLD----MYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLE 289
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYA 151
F + +LG+ D + + VL+A + G LDFG K +I + TAI++MYA
Sbjct: 290 LFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYA 349
Query: 152 K 152
K
Sbjct: 350 K 350
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+G Q+ ++LE F + +LG+ D + + VL+A + G W+ Q
Sbjct: 274 MITGLVQSDHPKQSLELFSMMRTLGISPDAIILTSVLSACASLGTLDFGTWVHEYINQRG 333
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G I +A R+ + A++ G + G +EAL F
Sbjct: 334 IKWDIHIGTAIVDMYAKCGCIEMALKIFYSMSQRNTFTWNALLCGLAMHGLVHEALNLFE 393
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ GV +E+T + +L A G +D G+
Sbjct: 394 VMIISGVKPNEITFLAILTACCHCGLVDEGR 424
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L RD VS ++ISG+ +AG F+EA+ F +++ V T+V VLAA + G L GK
Sbjct: 167 LVRDVVSWNSLISGFMKAGHFDEAISVFFRMD---VEPSMTTLVSVLAACARNGDLCTGK 223
Query: 138 S-----------NIFLTTAIIEMYAK 152
N+ L A+++MY K
Sbjct: 224 GIHGVIERRFKVNLVLGNAMLDMYVK 249
>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 872
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL------TASSGPGAWILAKELQI 54
M++GY+QAG A++ F +L GV +E T +L TAS G G ++
Sbjct: 469 MLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKS 528
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S S+ + YA G I A +D VS +MISGY+Q G+ +AL+ F
Sbjct: 529 RLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 588
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V D VT + V AA + G ++ G+
Sbjct: 589 KEMKKRKVKMDSVTFIGVFAACTHAGLVEEGE 620
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--GPGAWILAKELQIELDL 58
MISG+ Q EA+ F +++ GV +E T V+LTA P + A+ ++ +
Sbjct: 372 MISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSE-VHAQVVKTNYER 430
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
SS ++ Y G++ A +D V+ AM++GY+QAG A++ F +L
Sbjct: 431 SSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELT 490
Query: 110 SLGVHTDEVTMVVVL------AASSGPGALDFG-------KSNIFLTTAIIEMYAK 152
GV +E T +L AS G G G S++ +++A++ MYAK
Sbjct: 491 KGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 546
>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like, partial [Cucumis sativus]
Length = 658
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY Q G EAL F ++ V D + +V V+TA + G G I ++
Sbjct: 157 IISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLG 216
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + S T+ YA G + +AR + + AMISGY+ G EA++ F
Sbjct: 217 LEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFR 276
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + + D +TM + AS+ G+L+ + + F+ T +I+MYAK
Sbjct: 277 EMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAK 334
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+ G EA++ F ++ + + D +TM + AS+ G+ LA+ L + S
Sbjct: 258 MISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE 317
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y + + YA G I LAR D V MI GY G EA+ +
Sbjct: 318 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV ++ T + +L A G + G
Sbjct: 378 EMKQAGVCPNDGTFIGLLTACKNSGLVKEG 407
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GY+Q + + + ++ VH + T + VL A G G I + +
Sbjct: 56 IIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYG 115
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S S YA G+I AR VS ++ISGY Q G EAL F
Sbjct: 116 FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK 175
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V D + +V V+ A + L GKS
Sbjct: 176 EMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS 207
>gi|302775706|ref|XP_002971270.1| hypothetical protein SELMODRAFT_62636 [Selaginella moellendorffii]
gi|300161252|gb|EFJ27868.1| hypothetical protein SELMODRAFT_62636 [Selaginella moellendorffii]
Length = 435
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+++G +ALE F K++ H D++T+ VL A + K + +
Sbjct: 210 MIMGYARSGHIQDALEIFSKMD----HPDKITIAQVLDAYADLACLSQCKAAHRDFVSPN 265
Query: 61 YSLSSKT-------SRYAHSG----------RIRL-ARDPVSCKAMISGYSQAGRFNEAL 102
L S+T YA G R+ L +R+ VS AMIS Y+Q GR +E++
Sbjct: 266 QELESETMVANALVHMYAKCGSLDEARRVFDRMSLQSRNIVSWTAMISAYAQHGRSSESM 325
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
E F +++ GV ++VT + +L++ S G +D
Sbjct: 326 ELFQRMQQRGVEPNQVTFISILSSCSHSGLID 357
Score = 40.4 bits (93), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL------ 133
+D V +MI GY+++G +ALE F K++ H D++T+ VL A + L
Sbjct: 202 QDAVVWSSMIMGYARSGHIQDALEIFSKMD----HPDKITIAQVLDAYADLACLSQCKAA 257
Query: 134 --DFGKSN------IFLTTAIIEMYAK 152
DF N + A++ MYAK
Sbjct: 258 HRDFVSPNQELESETMVANALVHMYAK 284
>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Cucumis sativus]
Length = 673
Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY Q G EAL F ++ V D + +V V+TA + G G I ++
Sbjct: 172 IISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLG 231
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + S T+ YA G + +AR + + AMISGY+ G EA++ F
Sbjct: 232 LEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFR 291
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + + D +TM + AS+ G+L+ + + F+ T +I+MYAK
Sbjct: 292 EMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAK 349
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+ G EA++ F ++ + + D +TM + AS+ G+ LA+ L + S
Sbjct: 273 MISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSE 332
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y + + YA G I LAR D V MI GY G EA+ +
Sbjct: 333 YRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 392
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV ++ T + +L A G + G
Sbjct: 393 EMKQAGVCPNDGTFIGLLTACKNSGLVKEG 422
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GY+Q + + + ++ VH + T + VL A G G I + +
Sbjct: 71 IIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYG 130
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S S YA G+I AR VS ++ISGY Q G EAL F
Sbjct: 131 FGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK 190
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V D + +V V+ A + L GKS
Sbjct: 191 EMRQCNVKPDWIALVSVMTAYTNVEDLGQGKS 222
>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP---------GAWILAKE 51
+ISGY+Q G+ EAL F ++ V D + +V VL A + ++
Sbjct: 245 IISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMG 304
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR-------DP--VSCKAMISGYSQAGRFNEAL 102
L+ E DL L S TS YA G + +AR +P + AMISGY + G EA+
Sbjct: 305 LECEFDL----LISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAI 360
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMY 150
E F ++S + D +T+ +AA + G+L+ ++++ + T++I+ Y
Sbjct: 361 ELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTY 420
Query: 151 AK 152
AK
Sbjct: 421 AK 422
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G EA+E F ++S + D +T+ + A + G+ LA+ + + +S
Sbjct: 346 MISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSE 405
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA G + +AR D V AM+ GY G+ E++ F
Sbjct: 406 FRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFH 465
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ GV ++VT V +L A G ++ G
Sbjct: 466 AMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
++ YS+ G F A+E + +++ V D + VL A S A + + + ++
Sbjct: 144 IVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHG 203
Query: 57 -DLSSYSLSSKTSRYAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + + YA G I RL R VS ++ISGY+Q G+ EAL F
Sbjct: 204 FESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFS 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V D + +V VL A + L+ GKS
Sbjct: 264 EMRKTNVRPDWIALVSVLRAYTDVEDLEHGKS 295
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 47 ILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGR 97
I AK L L + ++ ++ ++ G + AR D A++ YS+ G
Sbjct: 94 IYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGF 153
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTA 145
F A+E + +++ V D + VL A S AL+ G+ S++F+
Sbjct: 154 FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNG 213
Query: 146 IIEMYAK 152
++ +YAK
Sbjct: 214 LVALYAK 220
>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+ Y+ G++ +A++ + L G D T++ +L++ P G I Q+
Sbjct: 227 LIACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLG 286
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D +++ S Y+ G I A R VS AMISGYS+ GR ++AL F
Sbjct: 287 CDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFN 346
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E G D VT++ +++ GAL G K ++ + A+I+MYAK
Sbjct: 347 AMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAK 404
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
MISGYS+ GR ++AL F +E G D VT++ ++ T + G G WI E
Sbjct: 328 MISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYASLHE 387
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L ++ YA G + AR+ VS AMI+ + G F EAL+ F
Sbjct: 388 LKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFS 447
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
L G+ + +T + VL A G L+ G+ + T
Sbjct: 448 LLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMT 485
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M++ YS+ R+ E + F + G+ DEVTM V++A + GA L KE+ + L
Sbjct: 210 MMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVLQG 269
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
DL Y SS YA G I +A ++ +I G + G EAL FG
Sbjct: 270 FDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRMFG 329
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + + VT + +L A + G ++ G+
Sbjct: 330 EMERKRIRPNAVTFISILTACTHAGFIEEGR 360
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
ARD +S M++ YS+ R+ E + F + G+ DEVTM V++A + GAL GK
Sbjct: 201 ARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKE 260
Query: 139 ------------NIFLTTAIIEMYAK 152
++++ +++I+MYAK
Sbjct: 261 VHLYLVLQGFDLDVYIGSSLIDMYAK 286
>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G+ EALE F L + VT + A +G A L KEL + +
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + S+ YA GR+ LA +D + +MI+ SQ GR EA+ F
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D V++ L+A + AL +GK S+++ +++I+MYAK
Sbjct: 452 QMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY Q G EA F + S G+ D +T L + + KE+
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHA 290
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ LD+ + S+ Y + +A+ D V C MISGY G+ EALE
Sbjct: 291 VVLDV--FLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEA 348
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F L + VT + A +G AL+ GK + +AI++MYAK
Sbjct: 349 FRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAK 408
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG----------- 136
MI G++ G+FN AL + K+ GV D+ T V+ A G ++ G
Sbjct: 29 MIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG 88
Query: 137 -KSNIFLTTAIIEMYAK 152
K ++F+ +++I++YA+
Sbjct: 89 LKEDVFVGSSLIKLYAE 105
>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 989
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q F EAL+ F ++E+ G+ +D + ++A +G A +++ + +S
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG 546
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ S YA GR + A +D +S A+ISG++Q+G EAL+ F
Sbjct: 547 YSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFS 606
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV + T ++A++ + GK
Sbjct: 607 QMNQAGVEANLFTFGSAVSATANTANIKQGK 637
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG++Q+G EAL+ F ++ GV + T ++A++ K++ + +
Sbjct: 588 LISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTG 647
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ S Y+ G I A+ + VS AMI+GYSQ G +EA+ F
Sbjct: 648 YDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFE 707
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ LG+ + VT V VL+A S G ++ G S
Sbjct: 708 EMKQLGLMPNHVTFVGVLSACSHVGLVNEGLS 739
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ Y Q G +E+ F +++ G+ ++ T +L + GA L +++ ++
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S YA G + AR D VS AMI+GY+Q F EAL+ F
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E+ G+ +D + ++A +G AL+ G+ ++ + A++ +YA+
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYAR 563
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG ++ L F + + V DE T VL A SG A E QI +
Sbjct: 82 VISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTE-QIHAKIIH 140
Query: 61 YSLSSK-------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S Y+ +G + LA+ D VS AMISG SQ GR +EA+
Sbjct: 141 HGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILL 200
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ V VL+A + G+ S F+ A++ +Y++
Sbjct: 201 FCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSR 260
>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Cucumis sativus]
Length = 762
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G+ EALE F L + VT + A +G A L KEL + +
Sbjct: 332 MISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTK 391
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + S+ YA GR+ LA +D + +MI+ SQ GR EA+ F
Sbjct: 392 LDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFR 451
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D V++ L+A + AL +GK S+++ +++I+MYAK
Sbjct: 452 QMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAK 509
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY Q G EA F + S G+ D +T L + + KE+
Sbjct: 231 IISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHA 290
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ LD+ + S+ Y + +A+ D V C MISGY G+ EALE
Sbjct: 291 VVLDV--FLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEA 348
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F L + VT + A +G AL+ GK + +AI++MYAK
Sbjct: 349 FRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAK 408
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG----------- 136
MI G++ G+FN AL + K+ GV D+ T V+ A G ++ G
Sbjct: 29 MIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCGLKSVKMGKIVHETVNLMG 88
Query: 137 -KSNIFLTTAIIEMYAK 152
K ++F+ +++I++YA+
Sbjct: 89 LKEDVFVGSSLIKLYAE 105
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
M++ Y+Q G+ NEAL F ++ ++GV E T+V +L+A + GA L K L +
Sbjct: 360 MLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYIND 417
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++++S ++ YA G+I LA +D ++ +I+G + G EA +
Sbjct: 418 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQL 477
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ GV +++T V +L+A S G +D G+
Sbjct: 478 FKEMKEAGVEPNDITFVAILSACSHAGMVDEGQ 510
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
RD VS +M++ Y+Q G+ NEAL F ++ ++GV E T+V +L+A + GALD G
Sbjct: 351 CRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 410
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N + TA+++MYAK
Sbjct: 411 LHTYINDNRIEVNSIVGTALVDMYAK 436
>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
Length = 1048
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 14/148 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
++S YS+ G + + FG L++ GV ++ T +VL++ + L K+ +++
Sbjct: 153 VLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMG 212
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S+ S Y+ G + AR D VS AMI+GY Q G EAL+ F
Sbjct: 213 FEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFE 272
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD 134
++ LG+ D+V V V+ A G G LD
Sbjct: 273 DMQKLGLVPDQVAFVTVITACVGLGRLD 300
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q G EAL+ F ++ LG+ D+V V V+TA G G A +L +++ +
Sbjct: 254 MIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNT- 312
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ V+ MISG+ + G EA++ F + GV + T+
Sbjct: 313 --------------------NVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTL 352
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + AL++G SN+++ +++I MYAK
Sbjct: 353 GSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAK 396
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISG+ + G EA++ F + GV + T+ VL+A + G + A+ ++
Sbjct: 320 MISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQG 379
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + Y SS + YA ++ A R+ V AM+ GY+Q G ++ ++ F
Sbjct: 380 LNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFS 439
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G DE T +L+A + L+ G+ N+F+ +++MYAK
Sbjct: 440 EMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAK 497
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY Q +EA F ++ G+ DEV++ +L+ + A +++ L S
Sbjct: 522 IIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSG 581
Query: 61 -----YSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
Y+ SS Y G I AR SC A+I+GY+Q EA++ F
Sbjct: 582 LQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQ-NDLVEAIDLFQ 640
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++++ G++ E+T +L A +GP L+ G+
Sbjct: 641 EMQNEGLNPSEITFASLLDACTGPYKLNLGRQ 672
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+ GY+Q G ++ ++ F ++ G DE T +L+A + + ++L +
Sbjct: 421 MLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHN 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ YA G + AR D VS A+I GY Q +EA F
Sbjct: 481 FEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+ DEV++ +L+ + AL+ G ++ ++ +++I+MY K
Sbjct: 541 RMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVK 598
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY+Q EA++ F ++++ G++ E+T +L A +GP L +++ +
Sbjct: 623 IIAGYAQ-NDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRG 681
Query: 57 -----DLSSYSL-------SSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
D SL KT + + + A+ISG++Q G EAL+
Sbjct: 682 LLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQL 741
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ ++ D+ T VL A S +L G+ S+ +A+++MYAK
Sbjct: 742 YQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAK 801
Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA G + A RD ++ +++S YS+ G + + FG L++ GV ++ T
Sbjct: 126 YAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTY 185
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+VL++ + +D GK N F ++I+MY+K
Sbjct: 186 AIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSK 229
>gi|297830924|ref|XP_002883344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329184|gb|EFH59603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 824
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MIS + Q G +E L +++ G D +T+ +L+A+S +++ +
Sbjct: 394 MISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHGFLIRQG 453
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E ++SY + YA SG IR++ RD + +MISGY+Q G E
Sbjct: 454 IQFE-GMNSYLID----MYAKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEE 508
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
F K+ + + VT+ +L A S G++D GK N+F+ +A+++
Sbjct: 509 TFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQYLDQNVFVASALVD 568
Query: 149 MYAK 152
MY+K
Sbjct: 569 MYSK 572
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY+Q G E F K+ + + VT+ +L A S G+ L K+L +
Sbjct: 496 MISGYTQNGHTEETFLVFRKMLEQNIRPNAVTVASILPACSQVGSVDLGKQLHGFSIRQY 555
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + S+ Y+ +G I+ A R+ V+ MI GY Q G A+ F
Sbjct: 556 LDQNVFVASALVDMYSKAGAIKYAENMFSQTKERNSVTYTTMILGYGQHGMGERAISLFL 615
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ LG+ D + V VL+A S G +D G
Sbjct: 616 SMQELGIKPDAIAFVAVLSACSYSGLVDEG 645
>gi|255556669|ref|XP_002519368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541435|gb|EEF42985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 524
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGA-----WILA--KEL 52
MISGY+Q G+ A+E F ++ ++ DEVTMV +++A GA WI+ E
Sbjct: 291 MISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGALELGTWIVNFISEY 350
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+IEL +S Y+ + SK + RI RD VS ++I G++ G NEA++
Sbjct: 351 RIELTISGYNALIFMYSKCGNMKEAQRIFQEMETRDVVSYNSLIGGFAAHGEGNEAIKLL 410
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ GV D VT + VL A S G ++ G +
Sbjct: 411 LSMKEEGVDPDHVTYIGVLTACSHAGLVEEGST 443
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 47/183 (25%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+ISGY+Q G EAL+ F + LGV +E T V+++ S G A+ LD
Sbjct: 158 IISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESFVKLLDKRK 217
Query: 58 ----------------------------------LSSYSLSSKTSRYAHSGRIRLARD-- 81
+S + ++ S Y G + ARD
Sbjct: 218 IKMNYFVKTALLDMNAKCGNLEAARGIFNELGVSRNSSTWNAMISAYTRVGDLLSARDLF 277
Query: 82 -------PVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGAL 133
VS MISGY+Q G+ A+E F ++ ++ DEVTMV +++A GAL
Sbjct: 278 DKMPERDAVSWNTMISGYAQNGQSAMAIELFKEMIDAKDSQPDEVTMVSIISACGHLGAL 337
Query: 134 DFG 136
+ G
Sbjct: 338 ELG 340
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA------- 132
++ VS A+ISGY+Q G EAL+ F + LGV +E T V+++ S G
Sbjct: 150 KNIVSWNAIISGYAQNGFVEEALKLFNHMIRLGVQPNETTWATVISSCSSCGDPCRAESF 209
Query: 133 ---LDFG--KSNIFLTTAIIEMYAK 152
LD K N F+ TA+++M AK
Sbjct: 210 VKLLDKRKIKMNYFVKTALLDMNAK 234
>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
Length = 805
Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MISGY G LE + ++ LG+ D T++ VL + G L K
Sbjct: 222 MISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKST 281
Query: 51 -ELQIELDLSSYSLSSKTSRYAHSGRIRL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
E +I + + SK G +R+ R+ VS +MI+GY++ GR + A+
Sbjct: 282 FERRINFSNTLLDMYSKCGDL--DGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D V +L A + G+LD GK SN+F+ A+++MY K
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK 399
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSR-----YAHSGRIRLAR--- 80
D TM +L A + A KE+ + + YS + Y G + LAR
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D VS MISGY G NEA+ F ++ G+ DEV+ + +L A S G L+
Sbjct: 491 DMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 135 FG------KSNIFLTTAIIEMYAKM 153
G N F +E YA M
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACM 575
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MISGY G LE + ++ LG+ D T++ VL + G L GK+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 139 -----------NIFLTTAIIEMYAK 152
I + +++MY+K
Sbjct: 274 HSLAIKSTFERRINFSNTLLDMYSK 298
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AW----ILAKEL 52
MISGY G NEA+ F ++ G+ DEV+ + +L A S G W I+ +
Sbjct: 504 MISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 53 QIELDLSSYS 62
IE L Y+
Sbjct: 564 NIEPKLEHYA 573
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q G+ EA+ F K+E GV +EVT+V VL A + GA L + +
Sbjct: 198 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 257
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S Y G + A R VS AMI G + GR EAL F
Sbjct: 258 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 317
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +G+ + VT + +L A S G + G+
Sbjct: 318 DMSQVGIEPNGVTFIGLLHACSHMGLISEGR 348
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 12/78 (15%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---------- 136
+MI+GY Q G+ EA+ F K+E GV +EVT+V VLAA + GALD G
Sbjct: 197 SMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRH 256
Query: 137 --KSNIFLTTAIIEMYAK 152
K N+ ++ +I+MY K
Sbjct: 257 GFKRNVRISNTLIDMYVK 274
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q G+ EA+ F K+E GV +EVT+V VL A + GA L + +
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S Y G + A R VS AMI G + GR EAL F
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +G+ + VT + +L A S G + G+
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ S +MI+GY Q G+ EA+ F K+E GV +EVT+V VLAA + GALD G
Sbjct: 223 RNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRI 282
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K N+ ++ +I+MY K
Sbjct: 283 HEYSNRHGFKRNVRISNTLIDMYVK 307
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q G+ EA+ F K+E GV +EVT+V VL A + GA L + +
Sbjct: 231 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 290
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S Y G + A R VS AMI G + GR EAL F
Sbjct: 291 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +G+ + VT + +L A S G + G+
Sbjct: 351 DMSQVGIEPNGVTFIGLLHACSHMGLISEGR 381
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ S +MI+GY Q G+ EA+ F K+E GV +EVT+V VLAA + GALD G
Sbjct: 223 RNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRI 282
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K N+ ++ +I+MY K
Sbjct: 283 HEYSNRHGFKRNVRISNTLIDMYVK 307
>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 672
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGY G N+ALE F L + + VT+ VL A +G L KEL
Sbjct: 246 IISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHG 305
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + S+ YA GR+ LA +D V A+I+ SQ G+ EA++ F
Sbjct: 306 LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFR 365
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D V++ L+A + AL GK S +F +A+I+MY K
Sbjct: 366 QMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGK 423
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
MI+G+ Q G +EA F ++ S GV D +T L +AS G I L+
Sbjct: 145 MIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHG 204
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L + S+ Y + +A D V C A+ISGY G N+ALE F
Sbjct: 205 IALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFR 264
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIF---------LTTAIIEMYAK 152
L + + VT+ VL A +G L+ GK +NI + +AI++MYAK
Sbjct: 265 WLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAK 322
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+ YSQ RF EAL F ++ G+ DEVTM V++A + GA L KE +Q
Sbjct: 214 MINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHG 273
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
+L Y S+ YA G + +L + C ++I G + G EAL F
Sbjct: 274 FNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFD 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E + + VT V VL+A + G ++ G+
Sbjct: 334 KMEREKIKPNGVTFVSVLSACNHAGLIEEGR 364
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
ARD +S MI+ YSQ RF EAL F ++ G+ DEVTM V++A + GALD GK
Sbjct: 205 ARDIISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKE 264
Query: 139 ------------NIFLTTAIIEMYAK 152
++++ +A+I+MYAK
Sbjct: 265 IHYYIMQHGFNLDVYIGSALIDMYAK 290
>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
Length = 853
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MISGY G EAL+ F L + + VT+ VL + A L ++ L+
Sbjct: 415 MISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNA 474
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GR+ L+ +D V+ +MIS +SQ G+ EAL+ F
Sbjct: 475 YERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFR 534
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+ + +T+ L+A + A+ +G K++IF +A+I+MYAK
Sbjct: 535 QMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAK 592
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISG Q G F EA F ++ G D +T+V +L A + KE+
Sbjct: 314 MISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNC 373
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ +D+ + +S+ Y +R+A+ D V MISGY G EAL+
Sbjct: 374 VNMDV--FLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQM 431
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F L + + VT+ VL + AL G+ ++ +A+++MYAK
Sbjct: 432 FRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAK 491
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-- 138
D V+ MISG Q G F EA F ++ G D +T+V +L A + L GK
Sbjct: 307 DLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVH 366
Query: 139 ----------NIFLTTAIIEMYAK 152
++FL +A++++Y K
Sbjct: 367 GYIVRNCVNMDVFLVSALVDIYFK 390
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EALE F ++ V DE TMV V++A + + L +++ +D
Sbjct: 191 MISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHG 250
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y G + A +D +S +I GY+ + EAL F
Sbjct: 251 FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ 310
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFLT-------------TAIIEMYAK 152
++ G ++VTM+ +L A + GA++ G+ ++++ T++I+MYAK
Sbjct: 311 EMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAK 370
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI---LAKEL 52
+I GY+ + EAL F ++ G ++VTM+ +L A + GA WI + K L
Sbjct: 292 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL 351
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALE 103
+ + SS+ +S YA G I L R S AMI G++ GR N A +
Sbjct: 352 KGVANASSHR-TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 410
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ + D++T V +L+A S G LD G+ +IF
Sbjct: 411 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR-HIF 447
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F + H D V+ ++T + G A+++ E+ +
Sbjct: 129 LISMYVQNGRLEDARKVFDQ----SSHRDVVSYTALITGYASKGYIASAQKMFDEIPI-- 182
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G EALE F ++ V DE TM
Sbjct: 183 -------------------KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 223
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + +++ G+ SN+ + A+I++Y K
Sbjct: 224 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIK 267
>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
Length = 625
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISG Q GR EAL F ++++ V D+V+ + +L+A G I
Sbjct: 177 MISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACG 236
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNEALEPF 105
+D ++ + Y+ ++ LAR + VS +MI+ Y+Q+GR EALE +
Sbjct: 237 MDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALELY 296
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ GV D++T L A + G G ++++FL TAI+ MYAK
Sbjct: 297 ELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKIRTDVFLDTAIVNMYAK 355
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI+ Y+Q+GR EALE + ++ GV D++T L A S GA I ++ + +
Sbjct: 279 MIAAYAQSGRGREALELYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESK 338
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ + YA G + A ++ V+ AM+ + Q G EAL+ +
Sbjct: 339 IRTDVFLDTAIVNMYAKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYL 398
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ S G E+T+ LAA S GAL GK + +FL +++ MYAK
Sbjct: 399 RMVSEGFQPSEITLAGALAACSRIGALQEGKAIHSRIQATETLQNCLFLQNSLLNMYAK 457
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ YSQ G E LE F K++ V D +T +L A S L KE+ + S
Sbjct: 79 MVVAYSQHGHGEEMLELFRKMD---VEPDSITYASILGACSAMELLELGKEVHARVSRSR 135
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y+ G + AR DP AMISG Q GR EAL F
Sbjct: 136 FKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWNAMISGLVQHGRAREALGLFE 195
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++++ V D+V+ + +L+A L G ++ + TA+ MY+K
Sbjct: 196 RMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASACGMDKDLVVETAVFNMYSK 253
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI+GY G F EALE F L+ G+ + +V LTA S G WI A +
Sbjct: 211 MITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNG 270
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+L ++ YA G I +A +D + ++ISG + G+ +A++ FG
Sbjct: 271 TELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFG 330
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++S V +EVT + VL+A S G +D G
Sbjct: 331 RMQSEKVIPNEVTFICVLSACSRMGLVDEG 360
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y SG + AR + VS AMI+GY G F EALE F L+ G+ + +
Sbjct: 184 YVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGI 243
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V L A S G+LD G+ + L TA+++MYAK
Sbjct: 244 VGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAK 287
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + GR EAL+ FG+++ + E TMV +L AS+ GA WI +
Sbjct: 228 MISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNN 287
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
+L+ +S Y G I A P+ S MI G + G NEA++ F
Sbjct: 288 FELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCENEAIQLFS 347
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+LE + D+VT V VL A + G +D K
Sbjct: 348 RLECSNLRPDDVTFVGVLTACNYSGLVDKAK 378
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS +MISGY + GR EAL+ FG+++ + E TMV +L AS+ GAL G+
Sbjct: 220 RNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWI 279
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ +T +II+MY K
Sbjct: 280 HDYIRKNNFELNVIVTASIIDMYCK 304
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + G NEA++ F +LE + D+VT V VLTA + G AKE
Sbjct: 329 MILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEY-------- 380
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+SL SKT +I + SC M+ +AG EA E + ++ V+ D +
Sbjct: 381 FSLMSKTY------KIEPSIKHYSC--MVDTLGRAGLLEEAEE---LIRNMPVNPDAIIW 429
Query: 121 VVVLAASSGPGALDFGK 137
+L+A G ++ K
Sbjct: 430 SSLLSACRKHGNVELAK 446
>gi|255566945|ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536243|gb|EEF37895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q+GRF EAL F ++ V + T++ VL+A + G+ W+ + +
Sbjct: 227 MIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWVSSWIEEHG 286
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +++ YA G + A ++ +S MI GY+ + EAL F
Sbjct: 287 LESNIKVMNALIDMYAKCGDLENALHLFEGIKNKNVISWNVMIGGYTHLSCYKEALGLFR 346
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ V ++VT++ +L A + GAL GK +N L T++I+MYAK
Sbjct: 347 QMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNMKNLANNALWTSLIDMYAK 405
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 15/156 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ + EAL F ++ V ++VT++ +L A + GA L K + +D +
Sbjct: 328 MIGGYTHLSCYKEALGLFRQMLQSNVEPNDVTLLSILPACANLGALGLGKWIHAYIDKNM 387
Query: 61 YSL------SSKTSRYAHSGRIRLAR------DP---VSCKAMISGYSQAGRFNEALEPF 105
+L +S YA G I +A +P S AMISG++ G+ + A+ F
Sbjct: 388 KNLANNALWTSLIDMYAKCGNIEVANQIFDGMNPKSLASWNAMISGFAMHGQADLAISLF 447
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
++ G+ D +T + VL+A + G LD G N F
Sbjct: 448 SRMTKEGLVPDNITFIGVLSACNHAGLLDLGHINHF 483
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS AMI+GY+Q+GRF EAL F ++ V + T++ VL+A + G+L G
Sbjct: 219 RDVVSWNAMIAGYTQSGRFEEALIFFEEMLRANVTPNMSTLLSVLSACAQSGSLKMGNWV 278
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+SNI + A+I+MYAK
Sbjct: 279 SSWIEEHGLESNIKVMNALIDMYAK 303
>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
Length = 811
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y+Q G A+E F +++ GV D VT + VL A G A + + +L+LS
Sbjct: 201 IIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSG 260
Query: 61 -----YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ SS + Y G + A+ + V+ +M++ Y+Q G EALE +
Sbjct: 261 LEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYR 320
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------------NIFLTTAIIEMYAK 152
++ES G D VT + L A S GAL G++ ++ L TA++ MY +
Sbjct: 321 EMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGR 380
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGP-----GAWILAKELQI 54
M+SGY+ G +ALE + + S+ D V ++ +TA S G I A+
Sbjct: 99 MVSGYALHGHSRQALELYQRFLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSR 158
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
ELD ++ + + Y + AR + VS +I Y+Q G A+E F
Sbjct: 159 ELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELF 218
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGA------------LDFGKSNIFLTTAIIEMYAK 152
+++ GV D VT + VL A G A L + ++F+ ++++ Y K
Sbjct: 219 QRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGK 277
>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
Length = 805
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MISGY G L + ++ LG+ D T++ VL + G L K
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281
Query: 51 -ELQIELDLSSYSLSSKTSRYAHSGRIRL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
E +I + + SK G +R+ R+ VS +MI+GY++ GR + A++
Sbjct: 282 FERRINFSNTLLDMYSKCGDL--DGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D V + +L A + G+LD GK SN+F+ A+++MYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSR-----YAHSGRIRLAR--- 80
D TM VL A + A KE+ + + YS + Y G + LAR
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D VS MI+GY G NEA+ F ++ G+ DEV+ + +L A S G L+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 135 FG------KSNIFLTTAIIEMYAKM 153
G N F +E YA M
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACM 575
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AW----ILAKEL 52
MI+GY G NEA+ F ++ G+ DEV+ + +L A S G W I+ +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 53 QIELDLSSYS 62
IE L Y+
Sbjct: 564 NIEPKLEHYA 573
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MISGY G L + ++ LG+ D T++ VL + G L GK+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 139 -----------NIFLTTAIIEMYAK 152
I + +++MY+K
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSK 298
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 65.5 bits (158), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EALE F ++ V DE TMV V++A + + L +++ +D
Sbjct: 206 MISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHG 265
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y G + A +D +S +I GY+ + EAL F
Sbjct: 266 FGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ 325
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFLT-------------TAIIEMYAK 152
++ G ++VTM+ +L A + GA++ G+ ++++ T++I+MYAK
Sbjct: 326 EMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAK 385
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 19/158 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI---LAKEL 52
+I GY+ + EAL F ++ G ++VTM+ +L A + GA WI + K L
Sbjct: 307 LIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRL 366
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALE 103
+ + SS+ +S YA G I L R S AMI G++ GR N A +
Sbjct: 367 KGVANASSHR-TSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F ++ + D++T V +L+A S G LD G+ +IF
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR-HIF 462
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F + H D V+ ++T + G A+++ E+ +
Sbjct: 144 LISMYVQNGRLEDARKVFDQ----SSHRDVVSYTALITGYASKGYIASAQKMFDEIPI-- 197
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G EALE F ++ V DE TM
Sbjct: 198 -------------------KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTM 238
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + +++ G+ SN+ + A+I++Y K
Sbjct: 239 VSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIK 282
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI+GY+Q GR EAL F + V +E T+V VL+A + A WI +
Sbjct: 232 MIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRG 291
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEAL 102
L L L +++ Y+ G ++ L RD +S MI GY+ + EAL
Sbjct: 292 LCSNLKL----VNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEAL 347
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ + GV E+T + +L + + GA+D GK
Sbjct: 348 ALFREMLASGVEPTEITFLSILPSCAHLGAIDLGK 382
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
MI GY+ + EAL F ++ + GV E+T + +L + + GA L K + ++ +
Sbjct: 333 MIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392
Query: 60 ----SYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA G I AR S AMI G + G+ ++A E F
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFS 452
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ S G+ +E+T V +L+A G +D G+
Sbjct: 453 KMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS AMI+GY+Q GR EAL F + V +E T+V VL+A + ALD G
Sbjct: 224 KDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSM 283
Query: 138 ----------SNIFLTTAIIEMYAK 152
SN+ L A+I+MY+K
Sbjct: 284 RSWIEDRGLCSNLKLVNALIDMYSK 308
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 89/177 (50%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M+ GY+ AG + A E F ++ ++G + VT ++T + G LA+++ E+
Sbjct: 61 MVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDEMPVRN 118
Query: 58 -------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
L YS++S + +D VS MISGY+QAGR+ + LE F +++
Sbjct: 119 LVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQT 178
Query: 111 -LGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIF-LTTAIIEMYAK 152
V +EVTMV VL+A + AL+ G+ +N + L A+I+MYAK
Sbjct: 179 ESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK 235
>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 670
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+I G+ Q G+ EAL F ++ S GV D +T+V VL+ + G +I E
Sbjct: 295 LIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHE 354
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ L + S + YA G + A RD VS AM+ GY + +F A
Sbjct: 355 IHCDIILQN----SLINMYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAF 410
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMY 150
F ++ V E+ +V +L+A S GALD G +++++L +A+++MY
Sbjct: 411 NLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSYIKEKSVRTDMWLESALVDMY 470
Query: 151 AK 152
AK
Sbjct: 471 AK 472
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAK--ELQ 53
MIS ++Q G+++ L +++S G +++T++ +L+A G W+ A+ E
Sbjct: 194 MISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYG 253
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
IE D+ + + Y G + A R+ S +I G+ Q G+ EAL
Sbjct: 254 IEADVDIRN--ALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTM 311
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ S GV D +T+V VL+ + G L G+ +I L ++I MYAK
Sbjct: 312 FEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAK 371
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 33/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW----------ILAK 50
MI GY+ +ALE F + GV D TM V +S+ +W L +
Sbjct: 90 MIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQSSAAFASWKGRATGDAVHALVQ 149
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
+ DL + +S + Y S + AR D VS MIS ++Q G+++
Sbjct: 150 RIGFASDL--FVMSGLINFYGASKSVEDARKVFEEMHERDVVSWTLMISAFAQCGQWDNV 207
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
L +++S G +++T++ +L+A A+D G ++++ + A+I M
Sbjct: 208 LRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGM 267
Query: 150 YAK 152
Y K
Sbjct: 268 YVK 270
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWI-------- 47
+ISG+ RF++A+E F +++S GV +E MV +L A G W
Sbjct: 179 LISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLG 238
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
Q ++ + +S YA G +R AR VS ++I+GYSQ G
Sbjct: 239 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 298
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAI 146
EAL F + LG+ D+VT + V+ AS G G+S + + A+
Sbjct: 299 EEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCAL 358
Query: 147 IEMYAK 152
+ MYAK
Sbjct: 359 VNMYAK 364
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 34/186 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GYS + ++AL + ++ G D T VL A SG G+ + ++
Sbjct: 78 MIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG 137
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLARD-----PVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y + Y G + R+ D V+ ++ISG+ RF++A+E F
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------------------NIFLTTAI 146
+++S GV +E MV +L A + GK N+ L T++
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSL 257
Query: 147 IEMYAK 152
I+MYAK
Sbjct: 258 IDMYAK 263
>gi|255553021|ref|XP_002517553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543185|gb|EEF44717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGY + G E L F ++ L V D +TM V++A G L +E+ +
Sbjct: 275 MISGYFENGECVEGLNLFLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTG 334
Query: 57 ---DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
D+S +SL + YA G + A RD VS AMISGY ++ALE
Sbjct: 335 YGNDVSVHSLLIQM--YASLGYWKEAEKVFSETECRDVVSWTAMISGYEGNLMHDKALET 392
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ +E G+ DE+T+ VL+A + G LD G S + + ++I+MY+K
Sbjct: 393 YKNMELAGIVPDEITIACVLSACASLGQLDLGMRLHELANRMGLMSFVIVANSLIDMYSK 452
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 30/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
++ GY++AG F+EAL + ++ +G+ D T VL + G +I KE+
Sbjct: 174 LVGGYAKAGFFDEALCLYHRMLWVGIKPDIYTFPCVLRSCGGANDFIRGKEIHCHVIRFG 233
Query: 54 IELDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEP 104
E D+S+ +++ + Y G + L RD +S AMISGY + G E L
Sbjct: 234 FETDVSA--VNALITMYVKCGCVGSARTVFDKMLQRDRISWNAMISGYFENGECVEGLNL 291
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ L V D +TM V++A G G+ +++ + + +I+MYA
Sbjct: 292 FLQMLELSVDPDLMTMTSVISACELLGDDRLGREIHGYVVRTGYGNDVSVHSLLIQMYAS 351
Query: 153 M 153
+
Sbjct: 352 L 352
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G R EAL F K++ + + +T++ VL+A + GA + KE L+
Sbjct: 477 IILGLRINNRSFEALSFFRKMKR-NLKPNSITLISVLSACARIGALMCGKEIHAHALKTA 535
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + ++ Y G++ LA D + ++ GY++ G+ A+E F K
Sbjct: 536 MVYEGFLPNAILDMYVRCGKLGLALNQFNLYKEDVAAWNILMRGYAEQGQGAMAVELFHK 595
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V+ D+VT + +L A S G ++ K
Sbjct: 596 MIESKVNPDDVTYIALLCACSRSGMVEEAK 625
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 80/151 (52%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
+ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+ L + + +D
Sbjct: 221 VISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRG 280
Query: 59 --SSYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ SL++ YA SG I A R+ V+ +I+G + G EAL F
Sbjct: 281 MNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVVTWTTIITGLATHGHGAEALVMFD 340
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV ++VT + +L+A S G +D G
Sbjct: 341 RMVKAGVKPNDVTFIAILSACSHVGWVDLGN 371
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS +ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+L+ G+
Sbjct: 213 RNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVLSACADLGSLELGERI 272
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAK 297
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWI---LAKEL 52
+I+G + GR EALE F ++ S GV DEVT+V VL A++ G W+ +
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESG 234
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
++ D+ Y S+ Y+ G A R+ VS A+I+GY Q R+ EAL+
Sbjct: 235 RVIWDV--YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALK 292
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++ G+ ++ T+ L A + G+LD G+ N L TA+++MY+
Sbjct: 293 VFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYS 352
Query: 152 K 152
K
Sbjct: 353 K 353
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 88/179 (49%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G+S + + L + +L + GV D T ++L A S P A ++
Sbjct: 75 IIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYAHIVKFG 133
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ +S S +AH G + +R D VS A+I+G + GR EALE F
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFV 193
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ S GV DEVT+V VL A++ + FG+ ++++ +A+++MY+K
Sbjct: 194 EMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK 252
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q R+ EAL+ F ++ G+ ++ T+ LTA + G+ + L +D S
Sbjct: 277 LIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSK 336
Query: 61 YSLSSK-----TSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+SK Y+ G + +L A+D AMI+G + G +L F
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V + VT + VL+A + G +D G
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEG 426
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+ YSQ G EA E ++ S G +E + VL+ G + A L +
Sbjct: 390 IIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 449
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S S+ YA G I A D +S AMISGY++ G EA+E F
Sbjct: 450 LEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFE 509
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ +G+ D VT + VL A S G +D G
Sbjct: 510 NIQKVGLRPDSVTFIGVLTACSHAGMVDLG 539
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+++ Y Q G+ + L+ F ++ + V +E T V++ + ++L
Sbjct: 289 IVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVG 348
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S +L SK A ++ + RD ++ +I+ YSQ G EA E
Sbjct: 349 FVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLS 408
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G +E + VL+ L+ GK + +A+I MYAK
Sbjct: 409 RMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAK 466
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIELD 57
+GYS+AG L F + V D + L AS+ GA I + L+ D
Sbjct: 195 AGYSEAG-----LAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFD 249
Query: 58 LSSYSLSSKTSRYAHSGRI-------RLAR--DPVSCKAMISGYSQAGRFNEALEPFGKL 108
+S+ +S T+ Y G++ R R D VS +++ Y Q G+ + L+ F ++
Sbjct: 250 ENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRM 309
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V +E T V++ + L +G+
Sbjct: 310 RASNVIPNEYTFSAVISCCANFARLKWGE 338
>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
Length = 660
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MI ++Q + NEA+ F ++ +S V +EVT+V VLTA + + K + +D
Sbjct: 157 MIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEH 216
Query: 60 SYSLSSKTSR-----YAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
+ + Y G ++LARD S MI+G+ + + EAL F
Sbjct: 217 GFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLF 276
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++++ G+ D+VTM +L A + GAL+ GK ++ L TA+++MYAK
Sbjct: 277 REMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAK 335
>gi|357128207|ref|XP_003565766.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33680-like [Brachypodium distachyon]
Length = 734
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++G+ Q G F +AL + +++ GV + +T+ +L A +G PG + + L+
Sbjct: 393 MVTGHVQNGEFEQALMLYARMDKEGVFPNTLTITSLLRACAGLAALEPGKQLHTQILKFG 452
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + S+ ++ Y+ G + R+ RD ++ ++ISG+SQ GR N+A+ F
Sbjct: 453 FGLGASVGSALSTMYSKCGNLEDGMVVFRRMPHRDVIAWNSIISGFSQNGRGNDAINLFE 512
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G D VT + VL A S G +D G
Sbjct: 513 EMKLEGTAPDPVTFINVLCACSHMGLVDRG 542
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GYSQ G A+ F ++ + G E T+V VL A S G + K+ +++
Sbjct: 292 MITGYSQNGNAESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLG 351
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y S+ YA G I A+ D V AM++G+ Q G F +AL +
Sbjct: 352 FEVQVYVKSALVDMYAKCGCIGDAKECFNQFSELDIVLWTAMVTGHVQNGEFEQALMLYA 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+++ GV + +T+ +L A +G AL+ GK L T I++
Sbjct: 412 RMDKEGVFPNTLTITSLLRACAGLAALEPGKQ---LHTQILK 450
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 43/187 (22%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
M++GY+ EA E F + L +H +E VL+A S P L + + +
Sbjct: 190 MVAGYAARKCSQEAFELFRQMLGECPLHKNEFVATAVLSAISVP--------LGLPMGVQ 241
Query: 60 SYSL-------------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGR 97
+ L +S + YA +G + A R+ ++ AMI+GYSQ G
Sbjct: 242 VHGLVVKDGMVGFVSVENSLVTMYAKAGCMDAAFHVFESSKERNSITWSAMITGYSQNGN 301
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTA 145
A+ F ++ + G E T+V VL A S G L GK +++ +A
Sbjct: 302 AESAVRMFSQMHAAGFPPTEFTLVGVLNACSDVGTLMEGKQAHGLMVKLGFEVQVYVKSA 361
Query: 146 IIEMYAK 152
+++MYAK
Sbjct: 362 LVDMYAK 368
>gi|414887968|tpg|DAA63982.1| TPA: hypothetical protein ZEAMMB73_972364 [Zea mays]
Length = 700
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 87/182 (47%), Gaps = 33/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL----GVHTDEVTMVVVLTASSGPGAWILAKELQ--- 53
M+ Y +AG E G L S+ V + VT+ VVLTA G +L + ++
Sbjct: 189 MVKAYERAGMVAEVE---GMLRSMVTEGAVAPNGVTLAVVLTACRDAGNLVLGRWVEEWV 245
Query: 54 --IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+++ S S+ Y G + AR D V+ AMI+GY+Q G NEA+
Sbjct: 246 RSAGMEVDSLIGSALVGMYEKCGEMAEARRVFDGIRHKDVVAWNAMITGYAQNGMSNEAI 305
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMY 150
F + G+ D++T+V VL++ + GAL G +N+++ TA+++MY
Sbjct: 306 ALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRGLYNNVYVGTALVDMY 365
Query: 151 AK 152
AK
Sbjct: 366 AK 367
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY+Q G NEA+ F + G+ D++T+V VL++ + GA L EL
Sbjct: 291 MITGYAQNGMSNEAIALFHSMREAGLCPDKITLVGVLSSCAAVGALKLGVELDTYAMRRG 350
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y ++ YA G + A ++ S A+I G + GR +A++ F
Sbjct: 351 LYNNVYVGTALVDMYAKCGDLEKATHVFGKMPFKNEASWNALICGLAFNGRGYDAIQQFE 410
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYA 151
+ + G+ D++T + VL+A G L++G+ + +F IE Y+
Sbjct: 411 LMRDEKGLQPDDITFIGVLSACVHAGLLEYGRQLFNSLTPVFKIIPRIEHYS 462
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+ YSQ G EA E ++ S G +E + VL+ G + A L +
Sbjct: 390 IIAAYSQVGYGEEAFEYLSRMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVG 449
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S S+ YA G I A D +S AMISGY++ G EA+E F
Sbjct: 450 LEQTSMVCSALIIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFE 509
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ +G+ D VT + VL A S G +D G
Sbjct: 510 NIQKVGLRPDSVTFIGVLTACSHAGMVDLG 539
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+++ Y Q G+ + L+ F ++ + V +E T V++ + ++L
Sbjct: 289 IVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHVLCVG 348
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S +L SK A ++ + RD ++ +I+ YSQ G EA E
Sbjct: 349 FVNALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEAFEYLS 408
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G +E + VL+ L+ GK + +A+I MYAK
Sbjct: 409 RMRSEGPKPNEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAK 466
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 19/149 (12%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIELD 57
+GYS+AG L F + V D + L AS+ GA I + L+ D
Sbjct: 195 AGYSEAG-----LAYFSGMGRSKVEYDSYAYAIALKASADSGALNHGRSIHTQTLKKGFD 249
Query: 58 LSSYSLSSKTSRYAHSGRI-------RLAR--DPVSCKAMISGYSQAGRFNEALEPFGKL 108
+S+ +S T+ Y G++ R R D VS +++ Y Q G+ + L+ F ++
Sbjct: 250 ENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRM 309
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V +E T V++ + L +G+
Sbjct: 310 RASNVIPNEYTFSAVISCCANFARLKWGE 338
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+++GY Q + EAL F +++ V DE+TMV +LTA S GA W+ +
Sbjct: 331 LMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMGMWVHRYIEKHR 390
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S +S YA G I A ++ ++ AMI G + G NEA+E F
Sbjct: 391 LVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICGLANHGHANEAIEHFR 450
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ LG DE+T + VL+A G + G+ L + KM
Sbjct: 451 TMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKM 497
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 81/211 (38%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
+I GY + G EALE F ++ E V DEVTM+ ++ L + L +D
Sbjct: 197 LIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVDS 256
Query: 59 SSYSLSSK-----TSRYAHSGRIRLA---------------------------------- 79
S + + Y G + +A
Sbjct: 257 DGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARKV 316
Query: 80 ------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
RD A+++GY Q + EAL F +++ V DE+TMV +L A S GAL
Sbjct: 317 FDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGAL 376
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
+ G ++ L T++I+MYAK
Sbjct: 377 EMGMWVHRYIEKHRLVFSVALGTSLIDMYAK 407
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 29 DEVTMVVVLTASSGPGAW-----ILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80
D +T +L A + W LA L++ LD + +++ T + G + AR
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLAASSGPGA 132
D VS +I GY + G EALE F ++ E V DEVTM+ ++
Sbjct: 184 DRSPVRDLVSWNTLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRD 243
Query: 133 LDFGK------------SNIFLTTAIIEMYAK 152
L+ G+ + L A+++MY K
Sbjct: 244 LELGRRLHGFVDSDGVSCTVRLMNALMDMYIK 275
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G+++ G++ EAL F ++E GV + +T++ L+A + GAWI A + +
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKND 354
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ SS Y+ G I A RD + +++ G + GR +AL F
Sbjct: 355 MNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFS 414
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
K++ V D+VTMV VL+A + G LD G +F +E Y M
Sbjct: 415 KMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXM 467
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +MI G+++ G++ EAL F ++E GV + +T++ L+A + GALD G
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346
Query: 137 -----KSNIF----LTTAIIEMYAK 152
K+++ L +++I+MY+K
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSK 371
>gi|147852347|emb|CAN80116.1| hypothetical protein VITISV_032528 [Vitis vinifera]
Length = 505
Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I Y+ EA+ + ++ SLG+ D++T ++L A + A+ +++Q++
Sbjct: 90 LIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAXISAFNEGRKIQVDVMKHG 149
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y ++ Y RIR AR VS A++S N++ F
Sbjct: 150 LDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFV 209
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G DE TMV++L+A S G L FG+ N L TA+++MYAK
Sbjct: 210 KMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAK 267
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSS 65
N++ F K+ G DE TMV++L+A S G W+ ++ ++ + ++ ++
Sbjct: 201 LNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTA 260
Query: 66 KTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA G + L R+ + AMI G +Q G EALE F K++ + +
Sbjct: 261 LVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPN 320
Query: 117 EVTMVVVLAASSGPGALDFG 136
VT + VL A S G +D G
Sbjct: 321 YVTFLGVLCACSHAGLVDDG 340
>gi|293332303|ref|NP_001170755.1| uncharacterized protein LOC100384848 [Zea mays]
gi|238007354|gb|ACR34712.1| unknown [Zea mays]
Length = 464
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLTASSGPGA-----WILAKEL 52
MI+GYS GRF EALE ++ S V+ + TM VL A +G G W+ A
Sbjct: 153 MIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVD 212
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ S Y G I A RD S MI G + GR +AL
Sbjct: 213 RNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADAL 272
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ FG ++ G+H D+VT+V VL A + G +D G + +
Sbjct: 273 KMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFY 311
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLAASSGPGALDFG 136
RD VS MI+GYS GRF EALE ++ S V+ + TM VLAA +G G L+ G
Sbjct: 145 RDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETG 204
Query: 137 ------------KSNIFLTTAIIEMYAK 152
+ L ++I+MY K
Sbjct: 205 IWVHAFVDRNRMNDDGSLDRSLIDMYVK 232
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G+++ G++ EAL F ++E GV + +T++ L+A + GAWI A + +
Sbjct: 295 MIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKND 354
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ SS Y+ G I A RD + +++ G + GR +AL F
Sbjct: 355 MNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFS 414
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ V D+VTMV VL+A + G LD G
Sbjct: 415 KMKEAQVQPDDVTMVGVLSACAHAGLLDQG 444
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +MI G+++ G++ EAL F ++E GV + +T++ L+A + GALD G
Sbjct: 287 RDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWI 346
Query: 137 -----KSNIF----LTTAIIEMYAK 152
K+++ L +++I+MY+K
Sbjct: 347 HAYVDKNDMNRDGSLDSSLIDMYSK 371
>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MISGY G L + ++ LG+ D T++ VL + G L K
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281
Query: 51 -ELQIELDLSSYSLSSKTSRYAHSGRIRL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
E +I + + SK G +R+ R+ VS +MI+GY++ GR + A++
Sbjct: 282 FERRINFSNTLLDMYSKCGDL--DGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D V + +L A + G+LD GK SN+F+ A+++MYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSR-----YAHSGRIRLAR--- 80
D TM VL A + A KE+ + + YS + Y G + LAR
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D VS MI+GY G NEA+ F ++ G+ DEV+ + +L A S G L+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 135 FG------KSNIFLTTAIIEMYAKM 153
G N F +E YA M
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACM 575
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AW----ILAKEL 52
MI+GY G NEA+ F ++ G+ DEV+ + +L A S G W I+ +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 53 QIELDLSSYS 62
IE L Y+
Sbjct: 564 NIEPKLEHYA 573
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MISGY G L + ++ LG+ D T++ VL + G L GK+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 139 -----------NIFLTTAIIEMYAK 152
I + +++MY+K
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSK 298
>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY Q G EA+ F +++ GV D T V VL+A + GA W+ +
Sbjct: 183 MISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNG 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL+ +S + Y G + A R+ V+ AMISGY G ++A+E F
Sbjct: 243 LDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFH 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ + +T V VL+A + G ++ G+
Sbjct: 303 EMRRNGLFPNSITFVAVLSACAHAGLVNEGR 333
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R V+ +MISGY Q G EA+ F +++ GV D T V VL+A + GA G
Sbjct: 175 RSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWV 234
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T++I MY +
Sbjct: 235 HEYIVGNGLDLNVVLGTSLINMYIR 259
>gi|255570436|ref|XP_002526177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534554|gb|EEF36253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 293
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 28/176 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK--LESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-D 57
MI G+++ G A F + LE V VT V++ + G A+ L E+ D
Sbjct: 43 MIDGFARNGDLVTARCLFDQVPLEQKNV----VTWTVMVDGYASKGKMADARILFEEMPD 98
Query: 58 LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ + SS S Y G ++ AR + V+ ++I GY+Q G EALE F +
Sbjct: 99 RNYFVWSSMISGYCKLGDVKEARCIFDRIPIRNLVNWNSLICGYAQNGFCEEALEAFENM 158
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G DE+T+V VL+A + G LD GK N F+ A+++MYAK
Sbjct: 159 QADGFEPDEITVVGVLSACAQLGLLDVGKDVHRMAYNKGIKLNQFIMNALVDMYAK 214
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 14/140 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I GY+Q G EALE F +++ G DE+T+V VL+A + G + K++
Sbjct: 138 LICGYAQNGFCEEALEAFENMQADGFEPDEITVVGVLSACAQLGLLDVGKDVHRMAYNKG 197
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L+ + +++ YA G + AR + AMISG++ G+ +ALE F
Sbjct: 198 IKLNQFIMNALVDMYAKCGDLTTARSIFEGMTYKNNACWNAMISGFAIHGQCKKALEFFR 257
Query: 107 KLESLGVHTDEVTMVVVLAA 126
++E D++T +++ A
Sbjct: 258 RMEESNEKPDDITFLILARA 277
>gi|357143516|ref|XP_003572948.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g22690-like [Brachypodium distachyon]
Length = 791
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 74/156 (47%), Gaps = 23/156 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G+ QAGR+ +AL F ++E G DEVT+V +L+A G +AK L
Sbjct: 308 LIGGFVQAGRYKDALVLFEEMEEAGFEADEVTVVTLLSACVHYGKIDVAKRLHHR--ARH 365
Query: 61 YSLSSKTSR--------YAHSGRIRLARDPVSC------------KAMISGYSQAGRFNE 100
+ L S+ +R YA G I+ A D V C AMI+G + +
Sbjct: 366 HGLISRNARLATSFVDMYAKHGCIQTAMD-VFCSVGDEFKTVHLFNAMINGLAHRSLGEK 424
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
A+ F + SLG+H D++T VL A S G + G
Sbjct: 425 AIALFDSMGSLGLHPDKITFTAVLCACSRSGLVSRG 460
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 22/111 (19%)
Query: 64 SSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
S+ S YA SG +R ARD P V+ +I G+ QAGR+ +AL F ++E G
Sbjct: 275 SAMLSGYARSGEVRTARDLFDGMPEKDLVAWTVLIGGFVQAGRYKDALVLFEEMEEAGFE 334
Query: 115 TDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
DEVT+V +L+A G +D K N L T+ ++MYAK
Sbjct: 335 ADEVTVVTLLSACVHYGKIDVAKRLHHRARHHGLISRNARLATSFVDMYAK 385
>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY Q + L F ++ + +++T+ +++ A GA W+ ++
Sbjct: 174 MIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCG 233
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++L SY +++ YA G +R AR D VS AMI GY+Q G EAL+ F
Sbjct: 234 IELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFL 293
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+ E + V ++VT+ V ++ S L+ G+S + +T ++++ YAK
Sbjct: 294 QKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTNSLVDFYAK 350
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 42/186 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+Q G EAL+ F + E + V ++VT+ V ++ S + L + L S
Sbjct: 275 MIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCS--------QLLNLNLGRSI 326
Query: 61 YSLSSKT-SR-----------YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
+ LS K SR YA R AR D V+ ++IS +SQ G
Sbjct: 327 HGLSIKLGSRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAY 386
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAI 146
EALE F ++ V D VT+V VL+A + AL G SN+++ TA+
Sbjct: 387 EALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTAL 446
Query: 147 IEMYAK 152
+ YAK
Sbjct: 447 LTFYAK 452
Score = 42.0 bits (97), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 65/154 (42%), Gaps = 27/154 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS +SQ G EALE F ++ V D VT+V VL+A + A LQ+ +
Sbjct: 375 IISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNA------LQVGSSFHA 428
Query: 61 YS-----LSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
Y+ LSS + YA G AR V+ AMISGY G
Sbjct: 429 YAVKRGLLSSNVYVGTALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGR 488
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+L FG + + +E +L+A S G +
Sbjct: 489 GSLSIFGDMLKAELKPNEEIFTSILSACSHTGMI 522
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 89/181 (49%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWI---LAKEL 52
+I+G + GR EALE F ++ S GV DEVT+V VL A++ G W+ +
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESG 234
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
++ D+ Y S+ Y+ G A R+ VS A+I+GY Q R+ EAL+
Sbjct: 235 RVIWDV--YVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALK 292
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++ G+ ++ T+ L A + G+LD G+ N L TA+++MY+
Sbjct: 293 VFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYS 352
Query: 152 K 152
K
Sbjct: 353 K 353
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
++ +S + + L + +L + GV D T ++L A S P A ++
Sbjct: 75 IVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQ-FYAHIVKFG 133
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ +S S +AH G + +R D VS A+I+G + GR EALE F
Sbjct: 134 LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFV 193
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ S GV DEVT+V VL A++ + FG+ ++++ +A+++MY+K
Sbjct: 194 EMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSK 252
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q R+ EAL+ F ++ G+ ++ T+ LTA + G+ + L +D S
Sbjct: 277 LIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSK 336
Query: 61 YSLSSK-----TSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+SK Y+ G + +L A+D AMI+G + G +L F
Sbjct: 337 LGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFS 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V + VT + VL+A + G +D G
Sbjct: 397 QMIRSRVQPNGVTFLGVLSACAHGGLVDEG 426
>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g69350, mitochondrial [Vitis vinifera]
Length = 875
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G+SQ G EA+ F ++ V D++T + V+ A S G W+ K +
Sbjct: 475 MICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYG 534
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L SY ++ T Y+ G +++A R VS MI+GY G+ N + F
Sbjct: 535 LRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFN 594
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ +++T + +L+A S GA++ GK
Sbjct: 595 QMLGSGIKPNDITFMHILSACSHAGAVEEGK 625
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
++ + Q G+ +E L+ F ++ S V D VTM+ V A S G+ L + + + E
Sbjct: 172 IVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE 231
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFG 106
++ ++ +S Y G + A + V C+ MIS Y+Q+G F EAL F
Sbjct: 232 IESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFA 291
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN-------------IFLTTAIIEMYA 151
K++ + ++VTMV VL A + G + G+S FL A++E+YA
Sbjct: 292 KMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYA 349
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V+ +++ + Q G+ +E L+ F ++ S V D VTM+ V A S G+L G+
Sbjct: 164 RDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSV 223
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN L ++I MY K+
Sbjct: 224 HGYVVRREIESNASLNNSLIVMYGKL 249
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
+IS +++ G+ EAL F ++++ G+ D ++ L+A S GA I ++
Sbjct: 375 LISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG 434
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ YA G + A + V+ +MI G+SQ G EA+ F
Sbjct: 435 -NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFD 493
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D++T + V+ A S G L+ GK + +L TA+ +MY+K
Sbjct: 494 QMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSK 551
>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g13770, mitochondrial-like
[Glycine max]
Length = 600
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G ++AL ++ G ++E T + + L + + I+L+
Sbjct: 98 MISAYSQRGYASQALSILVQILRSGTESNEFTFATMPYFMYRFLGFCLREAIHSLIIKLN 157
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y SS YA G+I AR D VSC A+ISGY+Q +E LE F
Sbjct: 158 FKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLD-LDEELELFL 216
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ ++ VT VL A SG ALD GK S + L ++I+MY+K
Sbjct: 217 RLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEVPSFVILQNSLIDMYSK 274
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 16/151 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
+ISGY+Q +E LE F +L+ G+ ++ VT VLTA SG A K++ L +
Sbjct: 199 IISGYAQLD-LDEELELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSE 257
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ + +S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 258 VPSFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFN 317
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
+ V D VT++ VL+ S G D G
Sbjct: 318 LMRDENKVKPDSVTVLAVLSGCSHGGQEDKG 348
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI G+ +A +A + + +++ G+ +D T +L G +L + + ++
Sbjct: 59 MIRGFGKANDPRKAFDYYKRMQERGLVSDSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRG 118
Query: 58 LSSYSLSSKT--SRYAHSGRIRLAR-------DP--VSCKAMISGYSQAGRFNEALEPFG 106
L+S+ T Y I +R +P V+ +I + G+FNEALE F
Sbjct: 119 LNSHVFVRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNIIIDCHVSCGKFNEALEMFS 178
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNI------FLTTAIIEMYAK 152
++ G+ DE T VV+L+A S GALDFG+ SNI + ++++MYAK
Sbjct: 179 RMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCITEVNNSLLDMYAK 236
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+I + G+FNEALE F ++ G+ DE T VV+L+A S GA W+ + I
Sbjct: 160 IIDCHVSCGKFNEALEMFSRMLKFGIEPDEATFVVILSACSALGALDFGRWVHSCISNIG 219
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA G ++ A ++ V+ MI G + G NEAL F
Sbjct: 220 HGCITEVNNSLLDMYAKCGALQEAFEIFNGMNKKNTVTWNTMILGLASHGYANEALALFS 279
Query: 107 K-LESLGVHTDEVTMVVVLAASSGPGALDFG 136
LE D++T +VVL+A S G +D G
Sbjct: 280 NMLEQKLWAPDDITFLVVLSACSHGGMVDKG 310
>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
Length = 584
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MISGY Q G A+E + +++ V D T V L+A + GA L +E++ +
Sbjct: 181 MISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQ 240
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + S+ + YA G + ARD V+ +MI+GY G EA++ F
Sbjct: 241 MDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFH 300
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ G ++VT V VLAA + G ++ G++
Sbjct: 301 LMRREGPTPNDVTFVAVLAACAHAGLVNEGRN 332
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R V+ AMISGY Q G A+E + +++ V D T V L+A + GALD G+
Sbjct: 173 RSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREV 232
Query: 139 -----------NIFLTTAIIEMYAK 152
++FL +A++ MYA+
Sbjct: 233 ERRIVSDQMDVSVFLGSALVNMYAR 257
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+++GY Q + EA+ F +++ V +E+TMV +L+A S GA W+ + +
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHK 386
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L LS +S YA G I+ A ++ ++ +MI G + G +EA+E F
Sbjct: 387 LHLSVALGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQ 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ LG+ DE+T + VL+A G ++ G+ L A + KM
Sbjct: 447 RMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKM 493
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKELQIELD- 57
+I GY ++G EALE F +L G V DEVT++ ++ + G L K L +D
Sbjct: 193 LIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDN 252
Query: 58 ----LSSYSLSSKTSRYAHSGRIRLA---------------------------------- 79
+ +++ Y G + LA
Sbjct: 253 KGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARML 312
Query: 80 ------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
RD A+++GY Q + EA+ F +++ V +E+TMV +L+A S GAL
Sbjct: 313 FDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGAL 372
Query: 134 DFG------------KSNIFLTTAIIEMYAK 152
+ G ++ L T++++MYAK
Sbjct: 373 EMGMWVHHYIDRHKLHLSVALGTSLVDMYAK 403
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFGK 137
RD VS +I GY ++G EALE F +L G V DEVT++ ++ + G L+ GK
Sbjct: 185 RDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQMGDLELGK 244
Query: 138 ------------SNIFLTTAIIEMYAK 152
+ L A+++MY K
Sbjct: 245 RLHEFVDNKGVRCTVRLMNAVMDMYVK 271
>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G+ + N ALE F ++ V +E T+V VL+A S GA W+ + + E
Sbjct: 249 MIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 308
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ + Y+ G I A RD ++ MISG S G+ +A+E F
Sbjct: 309 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFR 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + VT V VL A S G +DFG
Sbjct: 369 VMIGRRLRPTNVTFVGVLNACSHGGLVDFG 398
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
R+R +D V AMI G+ + N ALE F ++ V +E T+V VL+A S GAL+
Sbjct: 237 RVR-RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALE 295
Query: 135 FGKS------------NIFLTTAIIEMYAK 152
G+ N+F+ A+I MY++
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSR 325
>gi|297723953|ref|NP_001174340.1| Os05g0313600 [Oryza sativa Japonica Group]
gi|222631076|gb|EEE63208.1| hypothetical protein OsJ_18018 [Oryza sativa Japonica Group]
gi|255676232|dbj|BAH93068.1| Os05g0313600 [Oryza sativa Japonica Group]
Length = 620
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
M+ Y + G E + G V + VT+ VVL A G +L + ++
Sbjct: 200 MMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSA 259
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
++ S S+ Y G I AR D V+ AMI+GY+Q G NEA+ F
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D++T+ VL+A S GAL+ G +N+++ TA+++MYAK
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAK 378
>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
Length = 607
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G+ + N ALE F ++ V +E T+V VL+A S GA W+ + + E
Sbjct: 206 MIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 265
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ + Y+ G I A RD ++ MISG S G+ +A+E F
Sbjct: 266 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFR 325
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + VT V VL A S G +DFG
Sbjct: 326 VMIGRRLRPTNVTFVGVLNACSHGGLVDFG 355
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I G+ +G + +A++ + ++ + D M +L A A +E+ ++L
Sbjct: 101 LIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLG 160
Query: 58 LSS--------YSLSSKTSRYAHSGRI-------RLARDPVSCKAMISGYSQAGRFNEAL 102
LSS L K + R+ +A+D V AMI G+ + N AL
Sbjct: 161 LSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRAL 220
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
E F ++ V +E T+V VL+A S GAL+ G+ N+F+ A+I MY
Sbjct: 221 EAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMY 280
Query: 151 AK 152
++
Sbjct: 281 SR 282
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M+ GY+ AG + A E F ++ ++G + VT ++T + G LA+++ E+
Sbjct: 199 MVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDEMPVRN 256
Query: 58 -------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
L YS++S + +D VS MISGY+QAGR+ + LE F +++
Sbjct: 257 LVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQT 316
Query: 111 -LGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
V +EVTMV VL+A + AL+ G+ + L A+I+MYAK
Sbjct: 317 ESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK 373
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY Q F E L F ++ V DE +V +L+A + GA WI ++
Sbjct: 208 MISGYVQNNCFKEGLHMFRLMQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLG 267
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ + YA G + LA RD V AMISG + G A++ F
Sbjct: 268 LPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFM 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E G+ D +T + V A S G +D G
Sbjct: 328 EMEKAGIKPDNITFIAVWXACSNSGMVDEG 357
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 21/117 (17%)
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK 107
+LS+ S + YA+ G + AR D + K AMISGY Q F E L F
Sbjct: 168 ELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRL 227
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALD--------FGKSNIFLT----TAIIEMYAK 152
++ V DE +V +L+A + GALD G+ + LT T +I+MYAK
Sbjct: 228 MQLTEVEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAK 284
>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 623
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
++SGY + +EA+ F ++ GV + VT++ ++ A P G+ + L+
Sbjct: 123 LVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 182
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
D ++ + Y G + A+ PV S AM+SGY+Q G LE +
Sbjct: 183 FDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYR 242
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GVH D VT+V VL++ + GA G SN FL A+I MYA+
Sbjct: 243 NMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYAR 300
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G LE + ++ GVH D VT+V VL++ + GA + E++ ++ S
Sbjct: 224 MVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASG 283
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ + YA G + A R VS A+I GY G A++ F
Sbjct: 284 FTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFK 343
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D V VL+A S G D G
Sbjct: 344 EMIRSGIEPDGTAFVCVLSACSHAGLTDQG 373
>gi|414873430|tpg|DAA51987.1| TPA: hypothetical protein ZEAMMB73_709752 [Zea mays]
Length = 536
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLTASSGPGA-----WILAKEL 52
MI+GYS GRF EALE ++ S V+ + TM VL A +G G W+ A
Sbjct: 225 MIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETGIWVHAFVD 284
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ S Y G I A RD S MI G + GR +AL
Sbjct: 285 RNRMNDDGSLDRSLIDMYVKCGSIEKALQVFEKAPEARDLYSWTTMICGLAMHGRAADAL 344
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ FG ++ G+H D+VT+V VL A + G +D G + +
Sbjct: 345 KMFGMMQDNGIHPDDVTLVGVLNACAHCGLVDEGLRHFY 383
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 15/88 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLAASSGPGALDFG 136
RD VS MI+GYS GRF EALE ++ S V+ + TM VLAA +G G L+ G
Sbjct: 217 RDVVSWNTMIAGYSLVGRFMEALELSRQMISPSSCPVYPNGPTMSTVLAACAGAGCLETG 276
Query: 137 ------------KSNIFLTTAIIEMYAK 152
+ L ++I+MY K
Sbjct: 277 IWVHAFVDRNRMNDDGSLDRSLIDMYVK 304
>gi|302824230|ref|XP_002993760.1| hypothetical protein SELMODRAFT_137550 [Selaginella moellendorffii]
gi|300138410|gb|EFJ05179.1| hypothetical protein SELMODRAFT_137550 [Selaginella moellendorffii]
Length = 388
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 81/164 (49%), Gaps = 18/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV--HTDEVTMVVVLTASSGPGAWILAKEL-----Q 53
++S Y+QAGR +++ F +LE+ V H+ V+ ++ A + G A++
Sbjct: 136 LVSSYAQAGRIDDSKSVFDRLEARTVVPHSSVVSWTAMVVACAEGGQLDRAEQAFRSMPA 195
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEP 104
++D + + +S + YA +GR+ LA++ PV C AMI+ Y+Q G E +
Sbjct: 196 RDIDSAIAAWTSMVTAYARAGRVDLAKELFDRSRVPSPVLCNAMIAAYAQNGHHREVFQG 255
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
++ G+ D +T V++L A S G D KS F + +
Sbjct: 256 LVEMSLRGIRADTITFVLLLMACSHRGLAD--KSRDFFVAMVAD 297
>gi|222623920|gb|EEE58052.1| hypothetical protein OsJ_08887 [Oryza sativa Japonica Group]
Length = 779
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G LAK L
Sbjct: 306 LIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRLHCLVGRDG 365
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEALE 103
++ ++ ++ YA G I+ A++ S AMI+G ++ +A+
Sbjct: 366 LINRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIA 425
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ SLG+H D++T V VL+A G + G
Sbjct: 426 LFDEMGSLGLHPDKITFVCVLSACRHSGLVSQG 458
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V+ A+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G +D K
Sbjct: 298 KDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRL 357
Query: 138 -----------SNIFLTTAIIEMYAK 152
N L T ++MYAK
Sbjct: 358 HCLVGRDGLINRNAKLATTFVDMYAK 383
>gi|48716351|dbj|BAD22962.1| selenium-binding protein-like [Oryza sativa Japonica Group]
Length = 758
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G LAK L
Sbjct: 346 LIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRLHCLVGRDG 405
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEALE 103
++ ++ ++ YA G I+ A++ S AMI+G ++ +A+
Sbjct: 406 LINRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIA 465
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ SLG+H D++T V VL+A G + G
Sbjct: 466 LFDEMGSLGLHPDKITFVCVLSACRHSGLVSQG 498
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V+ A+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G +D K
Sbjct: 338 KDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRL 397
Query: 138 -----------SNIFLTTAIIEMYAK 152
N L T ++MYAK
Sbjct: 398 HCLVGRDGLINRNAKLATTFVDMYAK 423
>gi|359488917|ref|XP_002283393.2| PREDICTED: ATP-dependent zinc metalloprotease FTSH 6,
chloroplastic-like [Vitis vinifera]
Length = 1146
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I Y+ EA+ + ++ SLG+ D++T ++L A + A+ +++Q++
Sbjct: 731 LIRSYATRDSPREAIGAYLEMRSLGISPDKLTFPILLKACAAISAFNEGRKIQVDVMKHG 790
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y ++ Y RIR AR VS A++S N++ F
Sbjct: 791 LDCNVYVQNTMIHFYGSCKRIRDARRMFDEMSYRTVVSWNAVLSACVDNEWLNDSFGLFV 850
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G DE TMV++L+A S G L FG+ N L TA+++MYAK
Sbjct: 851 KMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTALVDMYAK 908
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 14/140 (10%)
Query: 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSS 65
N++ F K+ G DE TMV++L+A S G W+ ++ ++ + ++ ++
Sbjct: 842 LNDSFGLFVKMRGSGFDPDETTMVILLSACSELGNLSFGRWVHSQVIEKGMVVNCRLGTA 901
Query: 66 KTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA G + L R+ + AMI G +Q G EALE F K++ + +
Sbjct: 902 LVDMYAKCGAVCEASLVFHRMLERNVWTWSAMILGLAQHGFAKEALELFPKMKQSSISPN 961
Query: 117 EVTMVVVLAASSGPGALDFG 136
VT + VL A S G +D G
Sbjct: 962 YVTFLGVLCACSHAGLVDDG 981
>gi|255553251|ref|XP_002517668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543300|gb|EEF44832.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 512
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 14/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
MI GY Q F EAL F ++++ V DE TMV +LTA + GA L + ++ +D +
Sbjct: 292 MIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALELGEWVRTYIDKNK 351
Query: 60 ----SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+Y ++ Y G + AR D + AMI G + G EAL+ F
Sbjct: 352 VKNDAYVGNALIDMYFKCGNVEKARSIFNSMPRPDKFTWTAMIVGLAINGYGEEALDMFV 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
++ V DE+T V VL A + G +D G++ ++
Sbjct: 412 QMLKASVTPDEITYVGVLCACTHTGMVDEGRNLLY 446
Score = 54.7 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG------------------ 42
MIS Y++ ++++ F ++E V VT+V VL+A S
Sbjct: 160 MISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVHKYISDHV 219
Query: 43 -----------PGAWILAKELQIELDL-------SSYSLSSKTSRYAHSGRIRLAR---- 80
+ E+ + L + S ++ + +A+ G++ +AR
Sbjct: 220 VQSNLIVENALIDMYAACGEMSVALGIFESMKSRDVISWTAIVTGFANIGQLDIARKYFD 279
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMI GY Q F EAL F ++++ V DE TMV +L A + GAL+
Sbjct: 280 QMPERDYVSWTAMIDGYLQVNCFKEALVLFHEMQTSNVKPDEFTMVSILTACAQLGALEL 339
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K++ ++ A+I+MY K
Sbjct: 340 GEWVRTYIDKNKVKNDAYVGNALIDMYFK 368
Score = 38.9 bits (89), Expect = 0.67, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D V+ AMIS Y++ ++++ F ++E V VT+V VL+A S L+ G
Sbjct: 153 DVVTWNAMISAYNRIKQYDKTKTLFHEMEKKRVLPSSVTLVSVLSACSKLKDLESGQKVH 212
Query: 137 --------KSNIFLTTAIIEMYA 151
+SN+ + A+I+MYA
Sbjct: 213 KYISDHVVQSNLIVENALIDMYA 235
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M+ GY+ AG + A E F ++ ++G + VT ++T + G LA+++ E+
Sbjct: 199 MVGGYAAAGELDVAREMFDRMPAIGRNV--VTWNSMVTGFARHGLLPLARKMFDEMPVRN 256
Query: 58 -------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
L YS++S + +D VS MISGY+QAGR+ + LE F +++
Sbjct: 257 LVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQT 316
Query: 111 -LGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
V +EVTMV VL+A + AL+ G+ + L A+I+MYAK
Sbjct: 317 ESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK 373
>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
Length = 584
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MISGY Q G A+E + +++ V D T V L+A + GA L +E++ +
Sbjct: 181 MISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQ 240
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + S+ + YA G + ARD V+ +MI+GY G EA++ F
Sbjct: 241 MDVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFH 300
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ G ++VT V VLAA + G ++ G+S
Sbjct: 301 LMRLEGPTPNDVTFVAVLAACAHAGLVNEGRS 332
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R V+ AMISGY Q G A+E + +++ V D T V L+A + GALD G+
Sbjct: 173 RSVVAWNAMISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREV 232
Query: 139 -----------NIFLTTAIIEMYAK 152
++FL +A++ MYA+
Sbjct: 233 ERRIVSDQMDVSVFLGSALVNMYAR 257
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------E 51
MI GY + GR ++A+ F +++ GV DE+TMV VL+A +G GA L K
Sbjct: 86 MIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKER 145
Query: 52 LQIELDLSS-----YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+Q ++LS+ ++ + + R R+ VS ++I G + GR EA+ F
Sbjct: 146 VQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFE 205
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV D+V + +L+A S G +D GK
Sbjct: 206 EMVRSGVTPDDVVFIGLLSACSHSGLVDKGK 236
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D VS AMI GY + GR ++A+ F +++ GV DE+TMV VL+A +G GAL+ GK
Sbjct: 79 DSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVE 138
Query: 138 ---------SNIFLTTAIIEMYAK 152
N+ L+ A+I+M+AK
Sbjct: 139 SYVEKERVQKNVELSNALIDMFAK 162
>gi|125551786|gb|EAY97495.1| hypothetical protein OsI_19422 [Oryza sativa Indica Group]
Length = 620
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
M+ Y + G E + G V + VT+ VVL A G +L + ++
Sbjct: 200 MMKAYGRVGMNGEVGRMLRDMVKDGAVVPNAVTLAVVLAACRDEGDLVLGRWVEEWSKSA 259
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
++ S S+ Y G I AR D V+ AMI+GY+Q G NEA+ F
Sbjct: 260 GMETDSLVGSALVGMYEKCGEIAEARRVFDSIIDKDVVAWNAMITGYAQNGMSNEAISLF 319
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D++T+ VL+A S GAL+ G +N+++ TA+++MYAK
Sbjct: 320 HNMKKAGVCPDKITLAGVLSACSAVGALELGSELDGYASCRGLYNNVYVGTALVDMYAK 378
>gi|297600128|ref|NP_001048529.2| Os02g0818800 [Oryza sativa Japonica Group]
gi|255671357|dbj|BAF10443.2| Os02g0818800, partial [Oryza sativa Japonica Group]
Length = 601
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G LAK L
Sbjct: 330 LIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRLHCLVGRDG 389
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEALE 103
++ ++ ++ YA G I+ A++ S AMI+G ++ +A+
Sbjct: 390 LINRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIA 449
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ SLG+H D++T V VL+A G + G
Sbjct: 450 LFDEMGSLGLHPDKITFVCVLSACRHSGLVSQG 482
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V+ A+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G +D K
Sbjct: 322 KDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGNIDLAKRL 381
Query: 138 -----------SNIFLTTAIIEMYAK 152
N L T ++MYAK
Sbjct: 382 HCLVGRDGLINRNAKLATTFVDMYAK 407
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 21/160 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI---LAKEL 52
+I GY+ + EAL F ++ G ++VTM+ +L A + GA WI + K+L
Sbjct: 294 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKL 353
Query: 53 Q-IELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEA 101
+ + ++SS +S YA G I A R + AMISG++ GR N A
Sbjct: 354 KGVVTNVSSLQ-TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAA 412
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ F ++ G+ D++T V +L+A S G LD G+ NIF
Sbjct: 413 FDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGR-NIF 451
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY + G + EALE F ++ + V DE TMV V++A + + L + + ++
Sbjct: 192 MISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDH 251
Query: 60 SYSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
++ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 252 GFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLF 311
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNI-FLTTAIIEMY 150
++ G ++VTM+ +L A + GA+D G+ +N+ L T++I+MY
Sbjct: 312 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMY 371
Query: 151 AK 152
AK
Sbjct: 372 AK 373
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 87/210 (41%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M G++ + AL+ + + SLG+ D T +L + + G I L++
Sbjct: 60 MFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLG 119
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR----------------------------------- 80
DL Y +S S YA +GR+ AR
Sbjct: 120 FDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLAASSGPGALD 134
D VS AMISGY + G + EALE F ++ + V DE TMV V++A + +++
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239
Query: 135 FGK------------SNIFLTTAIIEMYAK 152
G+ SN+ + A+I++Y+K
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSK 269
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
++SGY+ AG F+ A+E F ++ G D+V++V VL A + GA WI A + +
Sbjct: 221 LVSGYTAAGDFSGAVEAFRLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQ 280
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +Y ++ YA G I A +D +S M+ G + GR EA++ F
Sbjct: 281 MLRETYVCNALVEMYAKCGCIDQALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFT 340
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
++E G V + +T V +L+A S G LD G
Sbjct: 341 EMERQGTVKPNGITFVGLLSACSHAGLLDEG 371
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 23/119 (19%)
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
E D+ S++ + S +A G++R AR VS A++SGY+ AG F+ A+E F
Sbjct: 181 ERDVVSWN--TVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAF 238
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D+V++V VL A + GAL+ G+ ++ A++EMYAK
Sbjct: 239 RLMQMEGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAK 297
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
M+ Y Q + EAL F K+++ GV D++ + VL A +++L +
Sbjct: 222 MLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAIHSYMLVSD 281
Query: 52 LQIELDLSSYSLS---------------------------SKTSRYAHSGRIRLAR---- 80
+ I +SS +S + S YA + ++ +AR
Sbjct: 282 MIIGAHISSALISLYASCANMEMAEKLYNEMPRKDLVSSTAMVSGYARNRKVEIARSIFD 341
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS AMISGY + + NEAL F ++ G+ +DE+TM+ V++A + G+LD
Sbjct: 342 GMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDK 401
Query: 136 GK------------SNIFLTTAIIEMYAK 152
K + + A+I+M+AK
Sbjct: 402 AKWIHAFIKNSGLNKVLHICNALIDMFAK 430
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + + NEAL F ++ G+ +DE+TM+ V++A + G+ WI A
Sbjct: 354 MISGYVDSNQPNEALSLFNGMQECGIRSDEITMLSVISACANLGSLDKAKWIHAFIKNSG 413
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ +A G I LA ++ ++ +MIS ++ G +L F
Sbjct: 414 LNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFE 473
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
+++ G +EVT + +L A G + G+ L +++++ Y
Sbjct: 474 QMKDEGAEPNEVTFLSLLYACCHAGLVHEGR---LLFSSMVQQY 514
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS M+ Y Q + EAL F K+++ GV D++ + VL A L GK+
Sbjct: 214 RDVVSWGVMLDSYCQTRNYKEALLLFAKMKNSGVVPDQLILATVLPACGHIRHLRIGKAI 273
Query: 139 -----------NIFLTTAIIEMYA 151
+++A+I +YA
Sbjct: 274 HSYMLVSDMIIGAHISSALISLYA 297
>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Glycine max]
Length = 1047
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 14/134 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q +F EAL F +++ G+H+D + ++A +G A +++ + +S
Sbjct: 545 MIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSG 604
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ S YA G++R ++D +S ++ISG++Q+G EAL F
Sbjct: 605 YSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFS 664
Query: 107 KLESLGVHTDEVTM 120
++ G + T
Sbjct: 665 QMSKAGQEINSFTF 678
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ Y NE+ + F +++ G+ ++ T +L S A L +++ ++
Sbjct: 444 MLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTG 503
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S YA G++ A +D VS AMI+GY+Q +F EAL F
Sbjct: 504 FQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFK 563
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+H+D + ++A +G AL+ G+
Sbjct: 564 EMQDQGIHSDNIGFASAISACAGIQALNQGQQ 595
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SG SQ+G EA+ F ++ + GV+ VL+A + + + ++L +
Sbjct: 242 MLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQG 301
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L +Y ++ + Y+ G L RD VS ++ISG SQ G ++ALE F
Sbjct: 302 FSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFK 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ + D VT+ +L+A S GAL GK S+I L A++++Y K
Sbjct: 362 KMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVK 419
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG++Q+G EAL F ++ G + T ++A++ L K++ + +
Sbjct: 646 LISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTG 705
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ S YA G I A ++ +S AM++GYSQ G +AL F
Sbjct: 706 HDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFE 765
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ LGV + VT V VL+A S G +D G
Sbjct: 766 DMKQLGVLPNHVTFVGVLSACSHVGLVDEG 795
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 38/185 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG SQ G ++ALE F K+ + D VT+ +L+A S GA ++ K+ S
Sbjct: 343 LISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFH------S 396
Query: 61 YSLSSKTSR-----------YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNE 100
Y++ + S Y I+ A + V M+ Y NE
Sbjct: 397 YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNE 456
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
+ + F +++ G+ ++ T +L S A+D G+ N+++++ +I+
Sbjct: 457 SFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLID 516
Query: 149 MYAKM 153
MYAK+
Sbjct: 517 MYAKL 521
>gi|297839569|ref|XP_002887666.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333507|gb|EFH63925.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 675
Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M +G+SQ G E LE F ++ L + TDEV++ V++A + G G + A+ +
Sbjct: 401 MTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASISSLGLGEQVFARATIVG 460
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD SS Y G + R D V +MISGY+ G EA++ F
Sbjct: 461 LDSDQIVSSSLIDLYCKCGSVENGRRVFDTMVKSDEVPWNSMISGYATNGHGFEAIDLFK 520
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ G+ ++T +VVL A + G ++ G+
Sbjct: 521 KMSIAGIRPTQITFMVVLTACNYCGLVEEGR 551
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 79/208 (37%), Gaps = 59/208 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY G EAL F +L+ D +T+ VL A + A K++ ++ +
Sbjct: 141 LLHGYILNGYSEEALRLFKELK---FSADAITLTTVLKACAELEALKRGKQIHAQILIGG 197
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SK + YA G +R+A D S +ISGY+ GR NE+ F
Sbjct: 198 VECDSKMNSSLVNVYAKCGDLRMASYMLEQIGEPDDHSLSTLISGYANCGRVNESRRLFD 257
Query: 107 ----------------------KLESLGVHT--------DEVTMVVVLAASSGPGALDFG 136
K E+L + D T+ V+ A G G L+ G
Sbjct: 258 RKSNRCVILWNSMISGYIANNMKFEALVLFNEMRNETWEDSRTLAAVINACIGLGFLETG 317
Query: 137 K------------SNIFLTTAIIEMYAK 152
K +I + + +++MY+K
Sbjct: 318 KQMHCHACKFGLVDDIVVASTLLDMYSK 345
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 26/153 (16%)
Query: 24 LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYS---LSSKTSRYAHSGRIRLAR 80
G+ D V +L S G+ + A +L E++ SY L+S Y GRI A+
Sbjct: 327 FGLVDDIVVASTLLDMYSKCGSPMEACKLFSEVE--SYDTILLNSMIKVYFSCGRIDDAK 384
Query: 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+S +M +G+SQ G E LE F ++ L + TDEV++ V++A +
Sbjct: 385 RVFERIENKSLISWNSMTNGFSQNGCPVETLEYFSQMHKLDLPTDEVSLSSVISACASIS 444
Query: 132 ALDFGK------------SNIFLTTAIIEMYAK 152
+L G+ S+ +++++I++Y K
Sbjct: 445 SLGLGEQVFARATIVGLDSDQIVSSSLIDLYCK 477
>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
Length = 703
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M+ Y+Q EALE + ++ + V DEVT+V+ L S+ L EL
Sbjct: 258 MLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHG 317
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I++ + S+ K + + R+ A D VS A+I Y+Q GR EALE +
Sbjct: 318 YDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYK 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++E G+ D+VT VL+A S L+ G+ S+ L A+I MY K
Sbjct: 378 QMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVAALINMYVK 436
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y+Q GR EALE + ++E G+ D+VT VL+A S L + L L
Sbjct: 359 LIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARK 418
Query: 61 YSLSSKT------SRYAHSGRIRLARDPV-SCK---------AMISGYSQAGRFNEALEP 104
S + Y GR+ L+ + SCK AMI+ Y Q G A++
Sbjct: 419 DGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDL 478
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYA 151
+ ++ G+ DE T+ +L+A + L+ G+ N + A+I MYA
Sbjct: 479 YDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYA 538
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIE---- 55
MI+ ++ G +AL+ F ++E + +EVT V A S P + K +
Sbjct: 159 MIAACARQGEAEQALQLFKRME---LEPNEVTFASVFNACSLLPDHREVGKRIHDRIRGS 215
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ + ++ + Y G++ +AR + VS AM+ Y+Q EALE +
Sbjct: 216 HLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVY 275
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + V DEVT+V+ L S+ L G SNI + A+I MY K
Sbjct: 276 HEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGK 334
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI+ Y Q G A++ + ++ G+ DE T+ +L+A + ++L +E+
Sbjct: 462 MITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELQDLEKGEQLHVEIIASR 521
Query: 57 DLSSYS--LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
D S L++ S YA G IR A RD VS +IS Y Q G AL +
Sbjct: 522 DCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLY 581
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV E T + V A G +D K
Sbjct: 582 RRMLVEGVQPTEPTFLCVFLACGHAGLVDECK 613
>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic; Flags: Precursor
gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 544
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G + N+ALE F +++ V +E T V VL+A S GA W+ +
Sbjct: 226 MIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++LS++ ++ + Y+ G I AR D +S MISG + G EA+ F
Sbjct: 286 MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFR 345
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G ++VT+V +L A S G LD G
Sbjct: 346 DMVNRGFRPNQVTLVALLNACSHGGLLDIG 375
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V AMI G + N+ALE F +++ V +E T V VL+A S GAL+ G+
Sbjct: 218 KDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWV 277
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN F+ A+I MY++
Sbjct: 278 HSFVENQRMELSN-FVGNALINMYSR 302
>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
Length = 682
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 81/177 (45%), Gaps = 26/177 (14%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQIEL 56
ISGY G+ EA++ F +L +G+ D ++V VL+A G WI + +
Sbjct: 181 ISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGM 240
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + ++ Y G + AR + VS +MI GY+ G EAL+ F K
Sbjct: 241 VRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFK 300
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + G+ D MV VL + + GAL+ G N L TA+I+MYAK
Sbjct: 301 MLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAK 357
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G EAL+ F K+ + G+ D MV VL + + GA L ++ +
Sbjct: 281 MIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGNE 340
Query: 61 YSLSSK-----TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA GR+ A +D V A ISG + +G +AL FG
Sbjct: 341 FLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFG 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++E G+ D T V +L A + G ++ G+ +F T IE Y M
Sbjct: 401 QMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCM 453
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI G F E++E + + G+ D T VL A A +L EL +++
Sbjct: 79 MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKAC----ARVLDSELGVKMHSLV 134
Query: 57 -----DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ S + Y G I A ++ S A ISGY G+ EA+
Sbjct: 135 VKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAI 194
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
+ F +L +G+ D ++V VL+A G L G+ N+F+ TA+++ Y
Sbjct: 195 DMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFY 254
Query: 151 AK 152
K
Sbjct: 255 GK 256
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MIS Y Q GR EALE F ++ GV D + + +L+A + GA WI A + +
Sbjct: 260 MISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSK 319
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ YA G I A ++ S AM+SG + G ALE F
Sbjct: 320 LRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFK 379
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI------FLTTAIIEMYAKM 153
++ES GV +++T V VL+A S G+++ G F T +E Y M
Sbjct: 380 QMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEHYGCM 432
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+I Y + G +A F ++ + V VT ++T G G A+ L E+ + +
Sbjct: 167 LIHMYLKCGSITDAHLLFDEMPNHNV----VTWNTMITGCFGCGDTERARRLFGEMPERN 222
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ Y+ G + +AR D VS +MIS Y Q GR EALE F ++
Sbjct: 223 VGSWNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMML 282
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
GV D + + +L+A + GALD G ++++FL TA+++MYAK
Sbjct: 283 AGVSADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAK 336
>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
Length = 756
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ Q G F EAL+ F + D T L+AS+ + ++ L +
Sbjct: 421 IISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTG 480
Query: 61 YSLSSK-----TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S S YA GR+ AR D VS A+I GY+ G +E + F
Sbjct: 481 FISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYA 151
++E+ V DE+T+VVVL+A S G +D G + ++I++Y+
Sbjct: 541 EMEANSVRPDEITLVVVLSACSHAGLIDEG---LHFFNSMIKLYS 582
Score = 35.4 bits (80), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 43/148 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY QAGR EA E F ++ V V + + S A+ L E+ + +S
Sbjct: 235 LVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMP---EKNS 291
Query: 61 YSLSSKTSRYAHSGRIRLA----------------------------------------R 80
S ++ S + SG+++ A R
Sbjct: 292 ISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVR 351
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKL 108
D V MISGY Q G +EA+ F ++
Sbjct: 352 DAVCWNTMISGYVQCGMLDEAMVLFQQM 379
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MISGY+ G EA F ++ G+ D+ T V +L+A S P A +E+ + E
Sbjct: 116 MISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAG 175
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L++ + ++ S YA G +R A RD VS + Y+++G E+L+ +
Sbjct: 176 LANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYH 235
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV +T + VL+A AL+ GK S++ ++TA+ +MY K
Sbjct: 236 AMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIK 293
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI G +G+ EA F ++ V D VT + +L+A + PG KE+
Sbjct: 318 MIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDG 377
Query: 56 -----------LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+++ S + S K +R + RD VS A++ GY+ G+ E+
Sbjct: 378 LVSDVRFGNALINMYSKAGSMKDARQVFDRMPK--RDVVSWTALVGGYADCGQVVESFST 435
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F K+ GV +++T + VL A S P AL +GK +++ + A++ MY K
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFK 495
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
++ GY+ G+ E+ F K+ GV +++T + VL A S P A KE+ E+
Sbjct: 419 LVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAG 478
Query: 57 ---DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
DL+ ++ S Y G + A RD V+ +I G +Q GR EAL+
Sbjct: 479 IFADLAV--ANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQK 536
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++S + + T V V++A ++ G+
Sbjct: 537 FEVMKSEEMRPNATTFVNVMSACRVRNLVEEGR 569
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L+ + + Y +++ Y H G + AR VS MISGY+ G EA
Sbjct: 71 LRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAF 130
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F ++ G+ D+ T V +L+A S P AL++G+ +N + A+I MY
Sbjct: 131 NLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMY 190
Query: 151 AK 152
AK
Sbjct: 191 AK 192
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ Y+++G E+L+ + + GV +T + VL+A A K++ ++ S
Sbjct: 217 LTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESE 276
Query: 61 YSLSSK-----TSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ + T Y G ++ AR+ C MI G +G+ EA F
Sbjct: 277 HHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFH 336
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D VT + +L+A + PG L GK S++ A+I MY+K
Sbjct: 337 RMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSK 394
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 73/147 (49%), Gaps = 26/147 (17%)
Query: 32 TMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR------ 80
TM VL A S G I A+ L+ S Y SS + Y+ I +AR
Sbjct: 94 TMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEI 153
Query: 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V AM+SGY++ G NEAL F +++ +G+ DEV++V VL+A + GALD GK
Sbjct: 154 TERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGK 213
Query: 138 ------------SNIFLTTAIIEMYAK 152
++ L TA+I MYAK
Sbjct: 214 WVHAYIKKRMIHVDLELNTALINMYAK 240
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILA--KELQ 53
M+SGY++ G NEAL F +++ +G+ DEV++V VL+A + GA W+ A K+
Sbjct: 164 MVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRM 223
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
I +DL ++ + YA G I AR D + +MI G + G +AL
Sbjct: 224 IHVDLELN--TALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNV 281
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++E + VT + +L+A + G + GK
Sbjct: 282 FSRMEEAQAKPNHVTFIGILSACAHGGLVSDGK 314
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA SG + +A +D V AMI GY A R EAL F +++++ ++ DEVTM
Sbjct: 256 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 315
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
V L+A S GALD G N+ L TA+I+MYAK
Sbjct: 316 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAK 359
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY A R EAL F +++++ ++ DEVTMV L+A S GA WI + E
Sbjct: 283 MIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHE 342
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+ ++ YA G+I A R+ ++ A+ISG + G + A+ F
Sbjct: 343 LSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 402
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V DEVT + +L+A G ++ G+
Sbjct: 403 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGR 433
>gi|15233292|ref|NP_188854.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273371|sp|Q9LIE7.1|PP246_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22150, chloroplastic; Flags: Precursor
gi|11994734|dbj|BAB03063.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|110739449|dbj|BAF01634.1| hypothetical protein [Arabidopsis thaliana]
gi|332643073|gb|AEE76594.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 820
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MIS + Q G +E L +++ G D +T+ +L+A+S A+++ +
Sbjct: 390 MISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQG 449
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E ++SY + Y+ SG IR++ RD + +MISGY+Q G +
Sbjct: 450 IQFE-GMNSYLID----MYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEK 504
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
F K+ + + VT+ +L A S G++D GK N+F+ +A+++
Sbjct: 505 TFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVD 564
Query: 149 MYAK 152
MY+K
Sbjct: 565 MYSK 568
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWI---LAKEL 52
M+ GY+Q GR +EAL F ++ GV DEV++V+ L+A ++ G W+ +
Sbjct: 230 MMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSS 289
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEA 101
+ L++ ++ Y G + A RD V+ AM++GY+ G EA
Sbjct: 290 SRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREA 349
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L FG+L + G+ ++T + VL A S G +D G+
Sbjct: 350 LAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGR 385
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 15/89 (16%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++D + AM+ GY+Q GR +EAL F ++ GV DEV++V+ L+A + G + G+
Sbjct: 221 SKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQLGTAESGRW 280
Query: 139 ---------------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 281 LHSFVTNSSSRRVRLNARVGTALIDMYYK 309
Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+ G EAL FG+L + G+ ++T + VL A S G +EL +
Sbjct: 336 MVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSM-AEE 394
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
Y + K Y M+ +AGR EA E
Sbjct: 395 YGIEPKVEHYG---------------CMVDLLGRAGRVEEAFE 422
>gi|222616932|gb|EEE53064.1| hypothetical protein OsJ_35805 [Oryza sativa Japonica Group]
Length = 841
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ Q G F EAL+ F + D T L+AS+ + ++ L +
Sbjct: 421 IISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLATLQIGRQFHSLLVRTG 480
Query: 61 YSLSSK-----TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S S YA GR+ AR D VS A+I GY+ G +E + F
Sbjct: 481 FISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYASNGNGSEVIAVFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYA 151
++E+ V DE+T+VVVL+A S G +D G + ++I++Y+
Sbjct: 541 EMEANSVRPDEITLVVVLSACSHAGLIDEG---LHFFNSMIKLYS 582
Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 43/148 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY QAGR EA E F ++ V V + + S A+ L E+ + +S
Sbjct: 235 LVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEMP---EKNS 291
Query: 61 YSLSSKTSRYAHSGRIRLA----------------------------------------R 80
S ++ S + SG+++ A R
Sbjct: 292 ISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDDARQLFDGIVVR 351
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKL 108
D V MISGY Q G +EA+ F ++
Sbjct: 352 DAVCWNTMISGYVQCGMLDEAMVLFQQM 379
>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
Length = 587
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
M++ Y+Q G+ NEAL F ++ ++GV E T+V +L+A + GA L K L +
Sbjct: 185 MLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA--LDKGLHLHTYIND 242
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++++S ++ YA G+I LA +D ++ +I+G + G EA
Sbjct: 243 NRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRL 302
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F +++ GV +++T V +L+A S G +D G+
Sbjct: 303 FKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQK 336
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
RD VS +M++ Y+Q G+ NEAL F ++ ++GV E T+V +L+A + GALD G
Sbjct: 176 CRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 235
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N + TA+++MYAK
Sbjct: 236 LHTYINDNRIEVNSIVGTALVDMYAK 261
>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
Length = 694
Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
++S Y+Q G EALE F ++ + V D V +V VL A + G I A +++
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ L S + YA G++ A+ + + AMISGY++ G EA++ F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + V D +++ ++A + G+L+ +S ++F+++A+I+M+AK
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EA++ F ++ + V D +++ ++A + G+ A+ + + S
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353
Query: 61 YS-----LSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ +A G + L RD V AMI GY GR EA+ +
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+E GVH ++VT + +L A + G + G
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS+ F +AL + ++ V D T +L A SG G ++ A+ ++
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEP 104
D + + + YA R+ AR VS A++S Y+Q G EALE
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ + V D V +V VL A + L G+S
Sbjct: 210 FSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRS 243
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MI+GYSQ G +EA+ F ++ S G+ E+ ++ V A S A L KEL
Sbjct: 480 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 539
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + SS YA G I L+ +D S +I+GY GR EALE F
Sbjct: 540 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 599
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ LG+ D+ T +L A S G ++ G
Sbjct: 600 KMLRLGLKPDDFTFTGILMACSHAGLVEDG 629
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
++ GY+Q +AL+ + ++ G+ D T+ +L A S + +E L+
Sbjct: 379 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 438
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + + S S Y G+ A R VS MI+GYSQ G +EA+ F
Sbjct: 439 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 498
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ E+ ++ V A S AL GK +IF++++II+MYAK
Sbjct: 499 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK 556
>gi|357145591|ref|XP_003573696.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Brachypodium distachyon]
Length = 618
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 25/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY ++G +NE + F + GV + +T V +L + L +++ +
Sbjct: 153 IINGYQKSGNYNEVVRLFLDMVGSGVRGNSLTFVCLLKSCGEQCNTKLGRQVHCCVVKGG 212
Query: 61 YSL----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+S S+ YA G I A RD +S MI+ Y Q GR ++ALE F
Sbjct: 213 WSNVIMDSAVVHFYAQCGHIASASTMFDKMASRDVISWTTMITAYVQHGRGDKALEMFSV 272
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAKM 153
+ S G + +E T+ +L A S A FG K +I + +A++ MYA++
Sbjct: 273 MVSEGYYPNEFTVCSILKACSDEKAFRFGKQLHGAIVKKLYKDDIHVGSALVTMYARL 330
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q+G +A+ F ++ V + +T+V +L+A + L KEL ++ +S
Sbjct: 354 MISGYAQSGHGEKAILLFQNMKMRRVSINNLTIVGLLSACGSIQSLRLGKELHAQIIKNS 413
Query: 61 YS-----------LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
K Y ++ RI RD +S AMISGY+ G EAL+
Sbjct: 414 IQENLQIGSTLVWCYCKCGEYTYAARILKDMPDRDAISWTAMISGYNSVGHNAEALKSLD 473
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ GV + T L A + AL G+ N+F+ +++I+MY +
Sbjct: 474 DMLWDGVKPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFLNVFVGSSLIDMYMR 531
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y Q GR ++ALE F + S G + +E T+ +L A S A+ K+L +
Sbjct: 253 MITAYVQHGRGDKALEMFSVMVSEGYYPNEFTVCSILKACSDEKAFRFGKQLHGAIVKKL 312
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ + YA G + A R+ ++ +MISGY+Q+G +A+ F
Sbjct: 313 YKDDIHVGSALVTMYARLGEVFDAQAVFDKMARRNTITWTSMISGYAQSGHGEKAILLFQ 372
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V + +T+V +L+A +L GK
Sbjct: 373 NMKMRRVSINNLTIVGLLSACGSIQSLRLGK 403
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
VS A+I+GY ++G +NE + F + GV + +T V +L + G+
Sbjct: 148 VSWTAIINGYQKSGNYNEVVRLFLDMVGSGVRGNSLTFVCLLKSCGEQCNTKLGRQVHCC 207
Query: 138 ------SNIFLTTAIIEMYAK 152
SN+ + +A++ YA+
Sbjct: 208 VVKGGWSNVIMDSAVVHFYAQ 228
>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 742
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 60/211 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------------GPGA 45
+ISGYS+AGR EA++ F + S G+ DEVT++ +L+A + G
Sbjct: 208 LISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKG 267
Query: 46 WILAKELQIELDLSSYSLSSKTSR-----------------------YAHSGRIRLA--- 79
+++ +L + L + Y+ R Y G + +A
Sbjct: 268 MLMSGKLVVAL-IDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYCKLGHVDVARYL 326
Query: 80 ------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
RD V+ ++I+GY GR EAL F ++ + D TMV +L A + GAL
Sbjct: 327 FDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGAL 386
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
G++ +I+L TA+++MY K
Sbjct: 387 PQGRALHACIEQRLVEVDIYLGTALLDMYLK 417
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GY GR EAL F ++ + D TMV +LTA + GA + L
Sbjct: 341 LITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRL 400
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+E+D+ Y ++ Y GR+ A RD + AMI+G + G ALE
Sbjct: 401 VEVDI--YLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ G + VT + +L A S LD G+
Sbjct: 459 FFWMKVDGFQPNSVTYIAILTACSHSCLLDEGR 491
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AR+ +S +ISGYS+AGR EA++ F + S G+ DEVT++ +L+A + L FG+S
Sbjct: 199 ARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQLKDLVFGRS 258
Query: 139 ------------NIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 259 LHKLVGEKGMLMSGKLVVALIDMYAK 284
>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 922
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+ GR EA++ F +++ G+ ++ + + +L+A P +++ + +
Sbjct: 123 MISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAG 182
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y S Y G + LAR + VS AMISGY Q G EA F
Sbjct: 183 YESDVNVSTALINMYCKCGSLELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQ 242
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
KL G ++V+ +L A + P L+ G + + + A+I MYA+
Sbjct: 243 KLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYAR 300
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 31/180 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY Q G EA F KL G ++V+ +L A + P L + L++ +
Sbjct: 224 MISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPND--LEQGLKLHAYIKQ 281
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L + S YA G + AR + VS AMI+GY + G EA
Sbjct: 282 AGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAGYGE-GFMEEAFRL 340
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ G D T +LA + L+ GK +++ + TA+I MYAK
Sbjct: 341 FRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRTAWEADVTVATALISMYAK 400
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D VS AMISGY+ GR EA++ F +++ G+ ++ + + +L+A P L+FG
Sbjct: 115 KDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTPIVLEFGEQI 174
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+S++ ++TA+I MY K
Sbjct: 175 HSHITKAGYESDVNVSTALINMYCK 199
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
MI+ Y Q G A + F K +S G D+ T + VL A +G L ++
Sbjct: 526 MIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFINVLRAIANLEDLDAGRKIHGLVEKAG 585
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+E D+ L++ Y+ G +R A +D V AM++ Y+ + +AL+
Sbjct: 586 LEKDIRI--LTTLIKMYSKCGSLRDAYSVFKNVQEKDVVCWNAMLAAYNHSDHGQDALKL 643
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ GV+ D T VL A + GA++ GK
Sbjct: 644 FQQMRLEGVNPDSATYTSVLNACARLGAIEHGK 676
>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 919
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q EALE F ++ G+ D + + ++A +G A +++ + +S
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSG 476
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ + YA GR + A +D ++ M+SG++Q+G + EALE F
Sbjct: 477 YSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFI 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ GV + T V ++AS+ + GK S + A+I +Y K
Sbjct: 537 KMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGK 594
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+SG++Q+G + EALE F K+ GV + T V ++AS+ G I A ++
Sbjct: 518 MVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTG 577
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ S Y G I A R+ VS +I+ SQ G EAL+ F
Sbjct: 578 CTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ ++VT + VLAA S G ++ G
Sbjct: 638 QMKQEGLKPNDVTFIGVLAACSHVGLVEEG 667
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
M+ Y Q ++ + F ++ + GV +E T +L + G L +++ +
Sbjct: 316 MLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTG 375
Query: 55 -ELDLS-SYSLSSKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
E D+ S L S+Y + R A+D VS +MI+GY Q EALE F
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFK 435
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D + + ++A +G A+ G+ +++ + A++ +YA+
Sbjct: 436 DMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYAR 493
Score = 35.8 bits (81), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY++ G EA+ + ++ GV + VL+A + A + + + +
Sbjct: 114 MLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTK--AALFEQGRLVHAQVYK 171
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S+T + Y G + LA D V+ +IS ++Q G ALE
Sbjct: 172 QGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEI 231
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ G D VT+ +LAA + G L+ GK
Sbjct: 232 FEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQ 265
Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS ++Q G ALE F ++ G D VT+ +L A + G +L L S
Sbjct: 215 LISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIG------DLNKGKQLHS 268
Query: 61 YSLSSKTS-----------RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNE 100
Y L + S Y G I A + V M+ Y Q +
Sbjct: 269 YLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAK 328
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIE 148
+ + F ++ + GV +E T +L + G ++ G +S+++++ +I+
Sbjct: 329 SFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLID 388
Query: 149 MYAK 152
MY+K
Sbjct: 389 MYSK 392
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+GY+Q+G + +AL ++ + + D T+ VL S + KE+ +
Sbjct: 177 VIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG 236
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+D Y SS YA S RI RD +S ++++GY Q GR+NEAL F
Sbjct: 237 IDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFR 296
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ S V V V+ A + L GK NIF+ +A+++MY+K
Sbjct: 297 QMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSK 354
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-LDLS 59
+ISGY+ + ++A F +++ GV D VT++ ++ + P L + L E +
Sbjct: 124 LISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGG 183
Query: 60 SYS----LSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
+YS L+S + Y G + R PV + A+ISGYSQ G + LE F
Sbjct: 184 TYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFE 243
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++S GV D T+V VL++ + GA G+ N+FL+ A+I MYA+
Sbjct: 244 QMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYAR 301
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MI+GYSQ G +EA+ F ++ S G+ E+ ++ V A S A L KEL
Sbjct: 382 MIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAH 441
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + SS YA G I L+ +D S +I+GY GR EALE F
Sbjct: 442 LTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFE 501
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ LG+ D+ T +L A S G ++ G
Sbjct: 502 KMLRLGLKPDDFTFTGILMACSHAGLVEDG 531
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
++ GY+Q +AL+ + ++ G+ D T+ +L A S + +E L+
Sbjct: 281 LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNG 340
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + + S S Y G+ A R VS MI+GYSQ G +EA+ F
Sbjct: 341 LAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ E+ ++ V A S AL GK +IF++++II+MYAK
Sbjct: 401 QMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAK 458
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY++ G + +ALE F +++ +G+ DE+++V VL + GA L K + I D +
Sbjct: 220 IVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAG 279
Query: 61 Y-----SLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I RL RD +S MI G + GR EA+E F
Sbjct: 280 FLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ 339
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + +T V +L A + G L+ G
Sbjct: 340 EMQKAKIEPSIITFVGLLTACAHAGLLNEG 369
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 12/78 (15%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------- 137
A++SGY++ G + +ALE F +++ +G+ DE+++V VL + GAL+ GK
Sbjct: 219 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 278
Query: 138 ---SNIFLTTAIIEMYAK 152
NI + A+IEMYAK
Sbjct: 279 GFLRNICVCNALIEMYAK 296
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 26/169 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q GR EALE F K++ +G+ TDEVT+ V++A + GA A ++ + S
Sbjct: 246 MVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSG 305
Query: 61 YSLSSKT-------SRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+ S Y+ G + R+ S +MI GY+ GR + AL+
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQL 365
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
F + + ++VT + +L+A S G ++ G+ +++AKM
Sbjct: 366 FHDMLKTEIRPNKVTFIGILSACSHAGLVEQGR----------QLFAKM 404
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 14/88 (15%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD---- 134
++D V+ AM++GY+Q GR EALE F K++ +G+ TDEVT+ V++A + GA+
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296
Query: 135 ---------FGKS-NIFLTTAIIEMYAK 152
FG S N+ + +A+I+MY+K
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSK 324
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 81/158 (51%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G +E+L F ++ G+ +D M VL+A + A L ++ + S
Sbjct: 113 VIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSG 172
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L S+ YA SG + A R+ VS ++I+G +Q GR N+A+ F
Sbjct: 173 FALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFE 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ G+ +E++ V VL+A S G ++ G+ L T
Sbjct: 233 QMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMT 270
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS A+I+GY+Q G +E+L F ++ G+ +D M VL+A + AL+ G+
Sbjct: 105 RDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQF 164
Query: 139 -----------NIFLTTAIIEMYAK 152
+I + +A+++MYAK
Sbjct: 165 HAYVVQSGFALDIVVGSALVDMYAK 189
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S MI+ YSQ +F EAL F ++++ G+ DEVTM +++A + GALD GK
Sbjct: 136 RDIISWTTMIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEI 195
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +A+I+MYAK
Sbjct: 196 HLYAMEMGFDLDVYIGSALIDMYAK 220
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY++ G + +ALE F +++ +G+ DE+++V VL + GA L K + I D +
Sbjct: 236 IVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAG 295
Query: 61 Y-----SLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I RL RD +S MI G + GR EA+E F
Sbjct: 296 FLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ 355
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + +T V +L A + G L+ G
Sbjct: 356 EMQKAKIEPSIITFVGLLTACAHAGLLNEG 385
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 12/78 (15%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------- 137
A++SGY++ G + +ALE F +++ +G+ DE+++V VL + GAL+ GK
Sbjct: 235 AIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKA 294
Query: 138 ---SNIFLTTAIIEMYAK 152
NI + A+IEMYAK
Sbjct: 295 GFLRNICVCNALIEMYAK 312
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 26/169 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q GR EALE F K++ +G+ TDEVT+ V++A + GA A ++ + S
Sbjct: 246 MVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSG 305
Query: 61 YSLSSKT-------SRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+ S Y+ G + R+ S +MI GY+ GR + AL+
Sbjct: 306 FGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQL 365
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
F + + ++VT + +L+A S G ++ G+ +++AKM
Sbjct: 366 FHDMLKTEIRPNKVTFIGILSACSHAGLVEQGR----------QLFAKM 404
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 54/87 (62%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD----- 134
+D V+ AM++GY+Q GR EALE F K++ +G+ TDEVT+ V++A + GA+
Sbjct: 238 KDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWI 297
Query: 135 --------FGKS-NIFLTTAIIEMYAK 152
FG S N+ + +A+I+MY+K
Sbjct: 298 RDIAERSGFGPSGNVVVGSALIDMYSK 324
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 84/185 (45%), Gaps = 37/185 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA----------WILAK 50
MISGY+Q+GR EA+ F ++ V + TM+ VL+A + G+ WI +
Sbjct: 231 MISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDR 290
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
L + L ++ Y G + A ++ VS MI GY+ + EA
Sbjct: 291 GLGSNIRL----VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEA 346
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--------------KSNIFLTTAII 147
L F ++ + ++VT + +L A + GALD G K+ + L T++I
Sbjct: 347 LGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLI 406
Query: 148 EMYAK 152
+MYAK
Sbjct: 407 DMYAK 411
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ + EAL F ++ + ++VT + +L A + GA L K + +D +
Sbjct: 333 MIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNM 392
Query: 61 YSL-------SSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEP 104
S+ +S YA G + +A+ C AMISG++ G + AL
Sbjct: 393 KSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGL 452
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ S G D++T V VL A G L G+
Sbjct: 453 FSRMTSEGFVPDDITFVGVLTACKHAGLLSLGR 485
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG-ALDFGK- 137
RD VS AMISGY+Q+GR EA+ F ++ V + TM+ VL+A + G +L G
Sbjct: 223 RDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNW 282
Query: 138 -----------SNIFLTTAIIEMYAK 152
SNI L +I+MY K
Sbjct: 283 VRSWIEDRGLGSNIRLVNGLIDMYVK 308
>gi|255562765|ref|XP_002522388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538466|gb|EEF40072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 472
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IELDL 58
MIS Y Q G+ EAL+ F ++ S V +E T++ VL+A G ++ K++ I
Sbjct: 292 MISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVMGKKIHNYICGTS 351
Query: 59 SSYSLS---SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S YS++ S YA G +R+A ++ VS +I + G EA+E F
Sbjct: 352 SMYSVTLCNSLIDMYAKCGALRIAIDVFNEMPNKNLVSWNVIIGALALHGYGVEAVELFR 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+++ GV DE+T + +L+A S G +D G
Sbjct: 412 KMQAAGVWPDEITFMGLLSACSHSGLVDSG 441
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 86/209 (41%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------------------- 41
MI GYS+ G E F ++ +G D+ T+V +L S
Sbjct: 160 MIGGYSKLGWCKEVFLLFKEMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITG 219
Query: 42 ----------------GPGAWILAKELQIEL-DLSSYSLSSKTSRYAHSGRIRLAR---- 80
GA +LA+ + ++ + + S +S + YA G + AR
Sbjct: 220 MKIDLVARNALIDMYAKCGALVLAERVFQQMPNKNVVSWTSMITAYAKQGLVEYARKSFD 279
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ VS +MIS Y Q G+ EAL+ F ++ S V +E T++ VL+A G L
Sbjct: 280 QMPEKNVVSWNSMISSYVQGGQCREALDLFHEMHSFRVVPNEATLLSVLSACGQIGDLVM 339
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GK ++ L ++I+MYAK
Sbjct: 340 GKKIHNYICGTSSMYSVTLCNSLIDMYAK 368
Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-WI------------ 47
+I GY + +++ + +L G+ +E T VL A + A W+
Sbjct: 59 LIRGYCNSNSPIKSMFLYRQLIDSGLSPNEFTFPFVLKACASKSAHWMSMIVHGHAQKLG 118
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
A + ++ L + ++ RYA ++ R VS +MI GYS+ G E F
Sbjct: 119 FASLICVQNGLINAYIACGFIRYARKMFDDMSERSLVSWNSMIGGYSKLGWCKEVFLLFK 178
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ +G D+ T+V +L S ++ G K ++ A+I+MYAK
Sbjct: 179 EMREIGTEADDFTLVNLLLVCSRRCDINLGRFVHLYIQITGMKIDLVARNALIDMYAK 236
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G+ + N ALE F ++ V +E T+V VL+A S GA W+ + + E
Sbjct: 213 MIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 272
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ + Y+ G I A RD ++ MISG S G+ +A+E F
Sbjct: 273 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFR 332
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + VT V VL A S G +DFG
Sbjct: 333 VMVGRRLRPTNVTFVGVLNACSHGGLVDFG 362
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I G+ +G + EA++ + ++ + D M +L A A +E+ ++L
Sbjct: 108 LIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLG 167
Query: 58 LSS--------YSLSSKTSRYAHSGRI-------RLARDPVSCKAMISGYSQAGRFNEAL 102
SS L K + R+ +A+D V AMI G+ + N AL
Sbjct: 168 FSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRAL 227
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
E F ++ V +E T+V VL+A S GAL+ G+ N+F+ A+I MY
Sbjct: 228 EAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMY 287
Query: 151 AK 152
++
Sbjct: 288 SR 289
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY QAG EAL F ++++ V D+ +V VL A + GA W+
Sbjct: 180 MVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + ++ Y+ G ++LA D ++ MI G + GR +EA+ F
Sbjct: 240 IKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFA 299
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ES G+ D++ + VL A + G +D G+
Sbjct: 300 QMESSGIRPDDIAFIGVLCACTHAGLVDKGR 330
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AR+ VS AM++GY QAG EAL F ++++ V D+ +V VLAA + GAL+ GK
Sbjct: 171 ARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKW 230
Query: 139 ------------NIFLTTAIIEMYAK 152
N+F TA+++MY+K
Sbjct: 231 VHGYLKAHGIKINLFFGTALVDMYSK 256
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR +EA+ F ++ES G+ D++ + VL A + G +EL + +
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGREL-FDSMVRK 339
Query: 61 YSLSSKTSRY-------AHSGRIRLARD-----PVSCKAMISGYSQAG-RFNEALE 103
Y + K Y A +G + A++ P+ A+I G AG RF++ +E
Sbjct: 340 YGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVE 395
>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY Q G N+A+E F + S G + T+ +L+ASS + K++ S
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404
Query: 61 YSLSSK-----TSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+LS T+ YA +G I R RD VS +MI +Q G EA+E F
Sbjct: 405 EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ +LG+ D +T V VL+A + G ++ G+S
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS 497
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I GY+Q GRF +A++ F + V + T+ VL + + G+ + K++ ++L
Sbjct: 78 IIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLG 137
Query: 58 L---------------------------------SSYSLSSKTSRYAHSGRIRLA----- 79
L ++ S ++ S + + GR+ LA
Sbjct: 138 LHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFE 197
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLAASSGPGALD 134
RD VS +MI+G +Q G NEAL+ F L+ + D ++ L+A + L
Sbjct: 198 LLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLS 257
Query: 135 FGKS-------NIF-----LTTAIIEMYAK 152
FGK +F + A+I MYAK
Sbjct: 258 FGKQIHGYIVRTMFDASGAVGNALISMYAK 287
Score = 43.9 bits (102), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+++S ++ S YA G++ A RD VS +I GY+Q GRF +A++ F +
Sbjct: 40 TTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMV 99
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V + T+ VLA+ + G+ GK + + + +++ MYAK
Sbjct: 100 KDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAK 154
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 48/185 (25%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QI 54
MI+G +Q G NEAL+ F L+ + D ++ L+A + K++ +
Sbjct: 210 MIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRT 269
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------------------------------- 80
D S ++ S YA SG + +AR
Sbjct: 270 MFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQ 329
Query: 81 --------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132
D V+ AMI GY Q G N+A+E F + S G + T+ +L+ASS +
Sbjct: 330 IFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTS 389
Query: 133 LDFGK 137
L+ GK
Sbjct: 390 LNHGK 394
>gi|449519932|ref|XP_004166988.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I GYS + EA+ FG++ GV + +T +L A + G A ++
Sbjct: 102 IIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCG 161
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LDL Y ++ + Y R+ AR VS A+I+ + F+EA++ F
Sbjct: 162 LDLDVYVRNTLINFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFL 221
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ + G DE TMVV+L+A + G L G+ N+ L TA ++MYAK
Sbjct: 222 KMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAK 279
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSS 65
F+EA++ F K+ + G DE TMVV+L+A + G W+ ++ + + L+ ++
Sbjct: 213 FDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTA 272
Query: 66 KTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA SG + AR +C AMI G +Q G NEA+E F + S + +
Sbjct: 273 FVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMTSSPIVPN 332
Query: 117 EVTMVVVLAASSGPGALD 134
VT + VL A S G +D
Sbjct: 333 HVTFIGVLCACSHAGLVD 350
>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Vitis vinifera]
Length = 615
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+DP++ AMISGY Q G+ EAL F ++ GV +EV+MV VL+A S GALD G
Sbjct: 206 KDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWA 265
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ + L TA+I+MYAK
Sbjct: 266 HAYIERNKLRMTLTLGTALIDMYAK 290
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY Q G+ EAL F ++ GV +EV+MV VL+A S GA W A + +
Sbjct: 214 MISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNK 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ ++ YA G + A ++ + + I G + G + LE F
Sbjct: 274 LRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFS 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ V +E+T V VL S G ++ G+ +
Sbjct: 334 LMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHF 367
>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISGY+Q G EA + + G +E VL+ G + A L +
Sbjct: 342 MISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVG 401
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ S+ + Y+ G I+ A + VS AMI+GY++ G EA++ F
Sbjct: 402 LEQNTMVQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFK 461
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
KL +G+ D VT + VLAA S G +D G
Sbjct: 462 KLPKVGLRPDSVTFIAVLAACSHAGLVDLG 491
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 26/172 (15%)
Query: 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD----LSSYS 62
Q G+ A++ F ++ V +E T V++ + G ++L + + S S
Sbjct: 247 QIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVDSLS 306
Query: 63 L-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
+ +S + Y+ ++ LA RD +S MISGY+Q G EA + + G
Sbjct: 307 VANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWMRREG 366
Query: 113 VHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+E VL+ L+ GK N + +A+I MY+K
Sbjct: 367 PRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCVGLEQNTMVQSALINMYSK 418
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+G +AG EAL F + V D T L A + GA +E+ +
Sbjct: 140 IIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKG 199
Query: 56 LDLSSYSLSSKTSRYAHSGR----IRL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
S+ ++ + Y G+ +RL RD VS +I Q G+ A++ F
Sbjct: 200 FTAVSFVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFR 259
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V +E T V++ + G +++G+
Sbjct: 260 RMRETDVSPNEFTFAAVISGCATLGRIEWGE 290
Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 13/89 (14%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALDFG 136
L RD +S +ISGY EAL F K+ G+H D + + L A ++ FG
Sbjct: 28 LQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFG 87
Query: 137 KS------------NIFLTTAIIEMYAKM 153
+S ++F+ +A+++MY K+
Sbjct: 88 ESLHGYSVKTDFVNSVFVGSALVDMYMKI 116
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQI 54
+ISGY EAL F K+ G+H D + + L A S G + ++
Sbjct: 38 IISGYVNGMNTTEALSLFSKMWVEPGLHMDPFILSLALKACGLNMSVSFGESLHGYSVKT 97
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ S + S+ Y G++ R+ VS A+I+G +AG EAL F
Sbjct: 98 DFVNSVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYF 157
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V D T L A + GAL++G+
Sbjct: 158 SDMWIQKVGCDTYTFSSALKACADSGALNYGR 189
>gi|242091784|ref|XP_002436382.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
gi|241914605|gb|EER87749.1| hypothetical protein SORBIDRAFT_10g001540 [Sorghum bicolor]
Length = 507
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
M+SGY+Q GR EA+ F ++ E GV +EVT+ VL A + GA L ++++
Sbjct: 188 MVSGYAQNGRHEEAVRTFLEMWEGCGVRPNEVTVSSVLPACAAVGALALGRKVERYARGR 247
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
+ + Y ++ YA G IR A RD S +MI ++ G + E L
Sbjct: 248 GMLTNVYVANALVEMYAKCGSIRRAWMVFRGIGKQRDLCSWNSMIMAFAVHGLWREVLGL 307
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F KL G D +T V V+ A + G +D GK
Sbjct: 308 FHKLRMTGAKPDGITFVGVILACTHGGLVDEGK 340
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 22/107 (20%)
Query: 68 SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDE 117
S YA GR+ A R+ +S AM+SGY+Q GR EA+ F ++ E GV +E
Sbjct: 159 SAYARCGRVDDAESLFAGMPDRNVISWTAMVSGYAQNGRHEEAVRTFLEMWEGCGVRPNE 218
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VT+ VL A + GAL G+ +N+++ A++EMYAK
Sbjct: 219 VTVSSVLPACAAVGALALGRKVERYARGRGMLTNVYVANALVEMYAK 265
>gi|255546351|ref|XP_002514235.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546691|gb|EEF48189.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I Y++ +AL+ + + GV D T+ +VL A+ + + K+LQ I L
Sbjct: 94 IIRSYTRLDAPVKALQVYISMSRAGVLPDSYTLPIVLKAACQIFSIEIGKQLQSVAIRLG 153
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S Y S S Y+ SG I+ A R S A+I G SQ G EA+E F
Sbjct: 154 LESNEYCESGFISFYSKSGDIKNAYKMFEENPERKLGSWNAIIGGLSQGGHAKEAIEIFI 213
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD--------------FGKSNIFLTTAIIEMYAK 152
++ G D+VTMV V++A G L+ FG++NI + ++I+MY K
Sbjct: 214 EMRKCGFVPDDVTMVSVISACGSLGDLNLAIQLHKYVFHANVFGRTNILVMNSLIDMYGK 273
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G SQ G EA+E F ++ G D+VTMV V++A G LA +L + ++
Sbjct: 195 IIGGLSQGGHAKEAIEIFIEMRKCGFVPDDVTMVSVISACGSLGDLNLAIQLHKYVFHAN 254
Query: 61 -------YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
++S Y GR+ LAR + S +MI GY G NEA+E
Sbjct: 255 VFGRTNILVMNSLIDMYGKCGRMDLARRVFCTMGEKNVSSWTSMIVGYGMHGHVNEAIEY 314
Query: 105 FGKLESLGVHTDEVTMVVVLA 125
F + GV + VT + VL+
Sbjct: 315 FHCMREAGVRPNHVTFIGVLS 335
>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Vitis vinifera]
Length = 650
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G+ + N ALE F ++ V +E T+V VL+A S GA W+ + + E
Sbjct: 249 MIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFE 308
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ + Y+ G I A RD ++ MISG S G+ +A+E F
Sbjct: 309 IELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFR 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + VT V VL A S G +DFG
Sbjct: 369 VMVGRRLRPTNVTFVGVLNACSHGGLVDFG 398
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
R+R +D V AMI G+ + N ALE F ++ V +E T+V VL+A S GAL+
Sbjct: 237 RVR-RKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALE 295
Query: 135 FGKS------------NIFLTTAIIEMYAK 152
G+ N+F+ A+I MY++
Sbjct: 296 IGRWVHSYMRKFEIELNLFVGNALINMYSR 325
>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
Length = 1072
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G+SQ G EA+ F ++ V D++T + V+ A S G W+ K +
Sbjct: 672 MICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYG 731
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L SY ++ T Y+ G +++A R VS MI+GY G+ N + F
Sbjct: 732 LRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFN 791
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ +++T + +L+A S GA++ GK
Sbjct: 792 QMLGSGIKPNDITFMHILSACSHAGAVEEGK 822
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
V+ +MI G+SQ G EA+ F ++ V D++T + V+ A S G L+ GK
Sbjct: 667 VTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHK 726
Query: 138 -------SNIFLTTAIIEMYAK 152
+ +L TA+ +MY+K
Sbjct: 727 LIMYGLRKDSYLDTALTDMYSK 748
>gi|224137486|ref|XP_002327138.1| predicted protein [Populus trichocarpa]
gi|222835453|gb|EEE73888.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISG QAGR ++A++ F +++ G+ D +T+ +LT S G L + L +
Sbjct: 309 VISGCVQAGRASDAMKFFCQMKMFGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRNN 368
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-------RDPV--SCKAMISGYSQAGRFNEALEPFG 106
L++ + +S Y G I LA R+P + MISGYS G + AL +
Sbjct: 369 LEVEDFVGTSLIDMYTKCGSILLAERVFKSIREPCVATWNTMISGYSWYGLEHNALNCYS 428
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
K+ G+ D +T + VLAA G L GK + + T
Sbjct: 429 KMREQGLEPDRITFLGVLAACIHGGLLHEGKKHFQIMT 466
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+IS Y++ G + +E F +++ L + D V MV +L + P G + L+
Sbjct: 208 IISSYAEKGNMDLVVECFSRMQQLDMKLDSVAMVSILHGITDPSHMSIGIALHGYALKNG 267
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + S Y I A + +S ++ISG QAGR ++A++ F
Sbjct: 268 LDTHNLVSNGLISMYFKFNDIEAAISLFYEMPEKPLISWNSVISGCVQAGRASDAMKFFC 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYAK 152
+++ G+ D +T+ +L S G L G ++N+ F+ T++I+MY K
Sbjct: 328 QMKMFGLSPDTITVASLLTGCSQLGYLRLGERLHNYILRNNLEVEDFVGTSLIDMYTK 385
>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G++Q G +AL+ + ++ LG+ D+ ++V +L A G KE L+
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547
Query: 56 LDLSSYSLSSKTSRYAHS-----GRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFG 106
L+++S+ S S Y H GR R + V AM+SGYSQ NEAL F
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ DE+ + +L A S AL GK + F+ ++++MYAK
Sbjct: 608 QMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAK 665
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M+SGYSQ NEAL F ++ S G+ DE+ + +L A S A L KE+
Sbjct: 589 MLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNS 648
Query: 54 -IELDLSSYSL---SSKTSRYAHSGRI--RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+E + + SL +K+ HS RI RL ++ S MI+G+ G+ N+A+E F
Sbjct: 649 LMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFE 708
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ D T + VL A G + G
Sbjct: 709 DMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL-----QI 54
++SGY + ++EA+ F +L S+ D T ++ A +G L K + ++
Sbjct: 180 LVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + + ++ + Y G + A ++ +S ++I G+S+ G + EA F
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299
Query: 106 GKL--ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
L G+ D TMV +L SG G +D G + + A+I+MY+
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359
Query: 152 K 152
K
Sbjct: 360 K 360
>gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 588
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 92/191 (48%), Gaps = 39/191 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+I+GY + G +A+E + +ES GV D+VTM+ ++++ + G ++ A
Sbjct: 153 LINGYKKIGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANG 212
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRI-----------RL-----ARDPVSCKAMISGYS 93
L++ + L++ + SK + RI +L +D V AMI G
Sbjct: 213 LRMTIPLANALMDMFSKCGDIHEARRIFDNLEKRTIVSKLFDDMEEKDVVMWNAMIGGSV 272
Query: 94 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIF 141
QA R +AL F ++++ DE+TM+ L+A S GALD G N+
Sbjct: 273 QAKRSQDALALFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVA 332
Query: 142 LTTAIIEMYAK 152
L T++++MYAK
Sbjct: 333 LGTSLVDMYAK 343
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 21/130 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
G IL ++ L+L S+ ++ +A G + AR D VS +I+GY +
Sbjct: 100 GHMILGHVFKLRLELVSHVHNASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKK 159
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFL 142
G +A+E + +ES GV D+VTM+ ++++ + G L+ GK I L
Sbjct: 160 IGEGEKAIEVYKVMESEGVKPDDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPL 219
Query: 143 TTAIIEMYAK 152
A+++M++K
Sbjct: 220 ANALMDMFSK 229
>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYS+ GR EA+ F +++ +G+ D T+V +L+ S+ G + L + + + + ++
Sbjct: 206 MINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTG 265
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYS------------- 93
+ S + YA G ++ A+ D VS MI+ Y+
Sbjct: 266 IEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFN 325
Query: 94 ------------------QAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
Q G + EA++ F ++ GV ++ T+V +L++ S G L
Sbjct: 326 QMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLAL 385
Query: 136 GK---SNIF---------LTTAIIEMYAK 152
GK S IF L AII+MYAK
Sbjct: 386 GKQAHSYIFDNNITLSATLCNAIIDMYAK 414
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I + Q G + EA++ F ++ GV ++ T+V +L++ S G L K+
Sbjct: 338 IIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNN 397
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+ LS+ ++ YA G ++ A D VS +I + G EA+E F
Sbjct: 398 ITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFE 457
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+++ GV DE+T +L+A S G +D G+
Sbjct: 458 KMQASGVCPDEITFTGLLSACSHSGLVDTGQ 488
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL-----AKELQIE 55
+I GYS + ++L + ++ G+ ++ T+ VL A + + L A+ ++
Sbjct: 105 LIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLG 164
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ + Y G I AR VS +MI+GYS+ GR EA+ F
Sbjct: 165 MGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFR 224
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ +G+ D T+V +L+ S+ G D G+ + +T A+++MYAK
Sbjct: 225 EMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAK 282
>gi|414881651|tpg|DAA58782.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 736
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MI+GY+Q G N A F ++ S G E T V VL A S GA ++ K+ L ++L
Sbjct: 297 MITGYAQNGEANCAARMFLQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLG 356
Query: 58 LSS--YSLSSKTSRYAHSGRIRLARD----------PVSCKAMISGYSQAGRFNEALEPF 105
+ Y S+ YA G I A+D V AMI+G+ Q G EAL +
Sbjct: 357 FETQVYVKSALVDMYAKCGCIGDAKDGFHQLYDVDDVVLWTAMITGHVQNGEHEEALMLY 416
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ +T+ VL A + ALD GK
Sbjct: 417 SRMDKQGIIPSYLTVTSVLRACACLAALDLGK 448
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G+ Q G EAL + +++ G+ +T+ VL A + A L K+L ++
Sbjct: 399 MITGHVQNGEHEEALMLYSRMDKQGIIPSYLTVTSVLRACACLAALDLGKQLHAQILKCR 458
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+SL ++ ++ Y+ G + + RD +S ++IS +SQ GR ++AL+ F
Sbjct: 459 FSLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDVISWNSIISVFSQHGRGSDALDMFE 518
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G D +T + +L+A S G +D G
Sbjct: 519 EMKLEGTAPDHITFINLLSACSHMGLVDRG 548
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
M+SGY+ EA E F L+ + +E VL+A S P ++ +L
Sbjct: 195 MVSGYATGKCSEEAFELFRLMLQKCPLEKNEFVTTAVLSAVSVPLGLLMGTQLHGLVLKD 254
Query: 54 -----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ S ++ +K + R+ R+ ++ AMI+GY+Q G N A F
Sbjct: 255 GLVGFVSVENSLVTMYAKAECMDAAMRVFGSSKERNSITWSAMITGYAQNGEANCAARMF 314
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G E T V VL A S GAL GK + +++ +A+++MYAK
Sbjct: 315 LQMHSSGFTPTEFTFVGVLNACSDMGALVVGKQTHCLMVKLGFETQVYVKSALVDMYAK 373
>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
Length = 694
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 90/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
++S Y+Q G EALE F + + V D V +V VL A + G I A +++
Sbjct: 193 IVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ L S + YA G++ A+ + + AMISGY++ G EA++ F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + V D +++ ++A + G+L+ +S ++F+++A+I+M+AK
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EA++ F ++ + V D +++ ++A + G+ A+ + + S
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353
Query: 61 YS-----LSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ +A G + L RD V AMI GY GR EA+ +
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+E GVH ++VT + +L A + G + G
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS+ F +AL + ++ V D T +L A SG G ++ A+ ++
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEP 104
D + + + YA R+ AR VS A++S Y+Q G EALE
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F + + V D V +V VL A + L G+S
Sbjct: 210 FSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRS 243
>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 868
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT------ASSGPGAWILAKELQI 54
M++GY+Q G A++ FG+L G+ +E T +L AS G G ++
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 524
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S S+ + YA G I A +D VS +MISGY+Q G+ +AL+ F
Sbjct: 525 RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 584
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V D VT + V AA + G ++ G+
Sbjct: 585 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--GPGAWILAKELQIELDL 58
MISG+ Q EA++ F +++ GV +E T V+LTA P + A+ ++ +
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-VHAQVVKTNYER 426
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
SS ++ Y G++ A +D V+ AM++GY+Q G A++ FG+L
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Query: 110 SLGVHTDEVTMVVVL------AASSGPGALDFG-------KSNIFLTTAIIEMYAK 152
G+ +E T +L AS G G G S++ +++A++ MYAK
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542
>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
Length = 761
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 83/197 (42%), Gaps = 48/197 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY+Q G E L F ++ + G+ DE T V V++A S G LA L Q +
Sbjct: 231 MLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQ 290
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+ + ++ YA G I A R+ V+ AMIS Y++ G + A E F
Sbjct: 291 IQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELF 350
Query: 106 GKLESLGVHT--------------------------------DEVTMVVVLAASSGPGAL 133
+ V T DEVTMV V++A GAL
Sbjct: 351 NTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGAL 410
Query: 134 DFGKSNI-FLTTAIIEM 149
+ G + FLT I++
Sbjct: 411 ELGNWVVRFLTENQIKL 427
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGA-----WILA--KEL 52
MI+GY+Q G+ A+E F ++ + T DEVTMV V++A GA W++ E
Sbjct: 364 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 423
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
QI+L +S ++ + S+ + R+ RD VS +ISG++ G EA+
Sbjct: 424 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 483
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
++ G+ D VT + VL A S G L+ G+ +F + I+ YA M
Sbjct: 484 STMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK-VFESIKDPAIDHYACM 532
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AM+SGY+Q G E L F ++ + G+ DE T V V++A S G S
Sbjct: 223 RSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASL 282
Query: 139 -----------NIFLTTAIIEMYAK 152
N F+ TA+++MYAK
Sbjct: 283 VRTLHQKQIQLNCFVRTALLDMYAK 307
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY Q F E+L F ++ + DE V +L+A + GA WI Q++
Sbjct: 210 MISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQLK 269
Query: 56 LDLSSYSLS-SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L S LS S YA G + LA RD V AMISG + G AL+ F
Sbjct: 270 LVPLSVRLSTSLLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLF 329
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPG 131
+E +GV D++T + V A S G
Sbjct: 330 YDMEKVGVKPDDITFIAVFTACSYSG 355
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 13/79 (16%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---------- 136
AMISGY Q F E+L F ++ + DE V +L+A + GAL+ G
Sbjct: 209 AMISGYVQNSCFKESLYLFRLMQLTDIVPDESIFVSILSACAHLGALEIGVWIHQHLNQL 268
Query: 137 ---KSNIFLTTAIIEMYAK 152
++ L+T++++MYAK
Sbjct: 269 KLVPLSVRLSTSLLDMYAK 287
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 72/160 (45%), Gaps = 30/160 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY Q+G ++AL + + V EVT VL A + A +EL
Sbjct: 315 MIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAA--------MELGTQI 366
Query: 61 YSLSSKT-------------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
+SLS KT YA G I+ AR D +S AMISGYS G
Sbjct: 367 HSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLV 426
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
EAL+ F ++ +++T V +L+A S G LD G++
Sbjct: 427 GEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQN 466
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MIS Y+Q+ + EA+E FG++ V ++ T VL + + L K+ L++
Sbjct: 214 MISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVG 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ YA GR+ + R+ V+ MI GY Q+G ++AL +
Sbjct: 274 LDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYK 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ V EVT VL A + A++ G ++ + A+I+MYAK
Sbjct: 334 NMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAK 391
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M++ Y++ RF ++L+ F ++ +G + + T VL A G A+ + K +
Sbjct: 113 MVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTC 172
Query: 54 IELDLS-SYSLSSKTSRYAHSGRI-RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
E+DL L +++ + + R+ D + MIS Y+Q+ + EA+E FG
Sbjct: 173 YEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFG 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ V ++ T VL + + L GK N+F++ A++++YAK
Sbjct: 233 QMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAK 290
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY Q+ + +E ++ F ++ G + +L + EL L
Sbjct: 12 LIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVS----VECAELAYSLHACI 67
Query: 61 YSLSSKTSR---------YAHSGRIRLAR---DPVSCKAMIS------GYSQAGRFNEAL 102
Y L +++ YA G + AR D ++CK M+S Y++ RF ++L
Sbjct: 68 YKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSL 127
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
+ F ++ +G + + T VL A G A GKS ++++ ++++Y
Sbjct: 128 QLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLY 187
Query: 151 AK 152
K
Sbjct: 188 TK 189
>gi|125545042|gb|EAY91181.1| hypothetical protein OsI_12790 [Oryza sativa Indica Group]
Length = 885
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q+G +A+ F K++ V + +T+V +L+A + L KEL ++ +S
Sbjct: 622 MISGYAQSGHGEKAIFLFRKMKMRRVFVNNLTIVGLLSACGSLQSLYLGKELHAQIIKNS 681
Query: 61 YS-----------LSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
K Y ++ RI A RD +S A+ISGY+ G EAL+
Sbjct: 682 MEDNLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLD 741
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV + T L A + AL +G+ SN+F+ +++I+MY +
Sbjct: 742 DMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMR 799
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y Q G +AL F ++ S G +E T+ VL A + A K+L +
Sbjct: 521 MITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKM 580
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ + YA G + A R+ ++ +MISGY+Q+G +A+ F
Sbjct: 581 YKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAIFLFR 640
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ V + +T+V +L+A +L GK
Sbjct: 641 KMKMRRVFVNNLTIVGLLSACGSLQSLYLGK 671
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q F +A+ FG+++ GV D+ +V +LT + GA K + +D +
Sbjct: 312 MINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENR 371
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S YA G I + D S ++I G + G+ +EALE F
Sbjct: 372 IKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALELFE 431
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ D++T V VL+A G ++ G+
Sbjct: 432 AMQTCGLKPDDITFVAVLSACGHAGLVEEGR 462
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQI----E 55
MISGY + RF EA++ + +++ +E T+V L+A + L KE+ E
Sbjct: 180 MISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANE 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--------PVSC---------------------- 85
LDL+ ++ Y G + +AR+ V+C
Sbjct: 240 LDLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFE 299
Query: 86 ----------KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
AMI+GY Q F +A+ FG+++ GV D+ +V +L + GAL+
Sbjct: 300 RSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQ 359
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K + ++TA+IEMYAK
Sbjct: 360 GKWIHNYIDENRIKMDAVVSTALIEMYAK 388
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MI + + G A+ F +L GV D T VL G I A ++
Sbjct: 79 MIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIHAFVVKTG 138
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ Y +S YA G + RD VS MISGY + RF EA++ +
Sbjct: 139 LEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYR 198
Query: 107 KLE-SLGVHTDEVTMVVVLAASSGPGALDFGK-------SNIFLT----TAIIEMYAK 152
+++ +E T+V L+A + L+ GK + + LT A+++MY K
Sbjct: 199 RMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCK 256
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 26/157 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG+ Q G+ NEA++ F KLE V +EVT+V VL A + G +L + +
Sbjct: 113 MISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLG------DLDLGRIVHE 166
Query: 61 YSLSSKTSR-----------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNE 100
YS S R Y G + A R VS AMI+G + G+ E
Sbjct: 167 YSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEE 226
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
AL F ++ LGV + VT + +L A S G +D G+
Sbjct: 227 ALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGR 263
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 12/78 (15%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---------- 136
+MISG+ Q G+ NEA++ F KLE V +EVT+V VLAA + G LD G
Sbjct: 112 SMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS 171
Query: 137 --KSNIFLTTAIIEMYAK 152
K N+ + +I+MY K
Sbjct: 172 GFKRNVHVCNTLIDMYVK 189
>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
Length = 608
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV--LTASSGP---GAWILAKELQIE 55
MI+ Y+ G + EAL F ++ S G + +T+ + + A +G G W A+ L E
Sbjct: 188 MIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKW--ARSLIAE 245
Query: 56 LDLSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
DL + + + Y I AR D V+ MI+GY+Q GR +E+LE F
Sbjct: 246 QDLQNMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELF 305
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIFLT----TAIIEMYAK 152
++++ +EVT+V VL+A + G+ + G N+ LT +A+I+MY K
Sbjct: 306 ERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK 364
>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M+SGY+Q GR +AL F ++++ + VT +++++A S G+ L ++L +
Sbjct: 274 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 333
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEP 104
+D+ + ++ Y G + A RD S +ISGY G EALE
Sbjct: 334 MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL 393
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ GV +++T +L+A S G +D G+
Sbjct: 394 FSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 426
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 41/170 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y QA R +AL F K++ G DE+T + V +A G
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLG---------------- 247
Query: 61 YSLSSKTSRYAHSGRIRLA------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
R A S R RL R+ +S +M+SGY+Q GR +AL F ++++
Sbjct: 248 ------DGRMAIS-RARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 300
Query: 115 TDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ VT +++++A S G+ G+ + L AI++MY K
Sbjct: 301 PNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 350
Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M+ Y+ AGR EA++ + ++ +GV + T VL + G + + ++
Sbjct: 103 MLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTG 162
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I L RD V AMI+ Y QA R +AL F
Sbjct: 163 FGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFR 222
Query: 107 KLESLGVHTDEVTMVVVLAA 126
K++ G DE+T + V +A
Sbjct: 223 KMQEEGFLGDEITAISVASA 242
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------- 137
C M+ Y+ AGR EA++ + ++ +GV + T VL + FG+
Sbjct: 100 CNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159
Query: 138 -----SNIFLTTAIIEMYAK 152
S++F+ A+++MYAK
Sbjct: 160 RTGFGSDLFVEAALVDMYAK 179
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 17/151 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
MISGYSQ GR+ +ALE F K+E G+ +EVT+ +L A + GA + ++
Sbjct: 185 MISGYSQNGRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVGDRIETYAREN 244
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALE 103
L + Y ++ YA G+I +A R+ S +MI G + GR ++AL
Sbjct: 245 GLLRNLYVSNALLEMYARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALH 304
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
+ ++ G+ D+VT V +L A + G L+
Sbjct: 305 LYNRMLIEGIAPDDVTFVGILLACTHGGMLN 335
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLAASSGPGALDFGK- 137
R+ VS AMISGYSQ GR+ +ALE F K+E G+ +EVT+ +L A + GAL+ G
Sbjct: 177 RNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRPNEVTIASILPACANLGALEVGDR 236
Query: 138 -----------SNIFLTTAIIEMYAK 152
N++++ A++EMYA+
Sbjct: 237 IETYARENGLLRNLYVSNALLEMYAR 262
>gi|302763173|ref|XP_002965008.1| hypothetical protein SELMODRAFT_34767 [Selaginella moellendorffii]
gi|300167241|gb|EFJ33846.1| hypothetical protein SELMODRAFT_34767 [Selaginella moellendorffii]
Length = 295
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
MI+ Y + G F E+LE + + G D + V L AS G GA I + L+
Sbjct: 51 MIAAYGERGYFQESLELWKIMRLEGAMPDLIAFVTALKSCCCPASLGTGALIHSMILESG 110
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ + YA GR+ LA R S +M++ Y+Q G ++ +
Sbjct: 111 LGSNVIIQNALLAMYARCGRLELAQLLFDGMPERSVFSWNSMVAAYAQHGHLDQVFQSLK 170
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++++ GV D VT V VL+A SG G L G+S+
Sbjct: 171 RMQNEGVKPDSVTFVSVLSACSGAGLLAEGRSHF 204
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
ARD + MI+ Y + G F E+LE + + G D + V L + P +L G
Sbjct: 42 ARDVILWTEMIAAYGERGYFQESLELWKIMRLEGAMPDLIAFVTALKSCCCPASLGTGAL 101
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN+ + A++ MYA+
Sbjct: 102 IHSMILESGLGSNVIIQNALLAMYAR 127
>gi|148906116|gb|ABR16216.1| unknown [Picea sitchensis]
Length = 394
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY+Q G +EAL F +++ V + VT+ VL A + KE+ +
Sbjct: 185 MVSGYAQGGFADEALRMFYEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRG 244
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL ++ YA G I L RD VS I+GY+Q GRF+E +E F
Sbjct: 245 LDLGIVVGNALIDMYAKCGSIGSAQKVFDKMLQRDVVSWNVAIAGYAQNGRFDECMELFR 304
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
K++ G+ D +T ++ A + G
Sbjct: 305 KMQCAGLKIDVITWNTLITAYAQNG 329
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAW---------ILAK 50
MI GY + G EALE + +++ + + D T VL A + + I++K
Sbjct: 83 MIGGYVKHGETREALELYHQMQKVSSTNPDNYTYSSVLNACARLASLSEGKLIYDEIISK 142
Query: 51 --ELQIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
E+ + ++ + ++ K + R+ R+ VS AM+SGY+Q G +EAL F
Sbjct: 143 GCEMDVIVENALINMFMKCGSIEDARRVFDKMCERNLVSWTAMVSGYAQGGFADEALRMF 202
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V + VT+ VL A + L GK I + A+I+MYAK
Sbjct: 203 YEMQGEDVKANYVTVASVLPACAQLSDLQQGKEIHGYIIRRGLDLGIVVGNALIDMYAK 261
>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
[Vitis vinifera]
Length = 707
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M+SGY+Q GR +AL F ++++ + VT +++++A S G+ L ++L +
Sbjct: 305 MLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 364
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEP 104
+D+ + ++ Y G + A RD S +ISGY G EALE
Sbjct: 365 MDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL 424
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ GV +++T +L+A S G +D G+
Sbjct: 425 FSRMQVEGVEPNDITFTSILSACSHAGLIDEGR 457
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y QA R +AL F K++ G DE+T + V +A G +A + L+
Sbjct: 204 MITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNG 263
Query: 61 Y-----SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA G + AR + +S +M+SGY+Q GR +AL F
Sbjct: 264 FIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFN 323
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ + VT +++++A S G+ G+ + L AI++MY K
Sbjct: 324 QMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M+ Y+ AGR EA++ + ++ +GV + T VL + G + + ++
Sbjct: 103 MLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTG 162
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I L RD V AMI+ Y QA R +AL F
Sbjct: 163 FGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFR 222
Query: 107 KLESLGVHTDEVTMVVVLAA------------SSGPGALDFGKSNIFLTTAIIEMYAK 152
K++ G DE+T + V +A G L+ ++ + +I+ MYAK
Sbjct: 223 KMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAK 280
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------- 137
C M+ Y+ AGR EA++ + ++ +GV + T VL + FG+
Sbjct: 100 CNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVV 159
Query: 138 -----SNIFLTTAIIEMYAK 152
S++F+ A+++MYAK
Sbjct: 160 RTGFGSDLFVEAALVDMYAK 179
>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
Length = 608
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV--LTASSGP---GAWILAKELQIE 55
MI+ Y+ G + EAL F ++ S G + +T+ + + A +G G W A+ L E
Sbjct: 188 MIACYAHGGEYQEALRLFRRMLSEGARPNAITIATMFSICAKTGDLETGKW--ARSLIAE 245
Query: 56 LDLSSYSLSSK------TSRYAHSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPF 105
DL + + + R R RD V+ MI+GY+Q GR +E+LE F
Sbjct: 246 QDLQNMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELF 305
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIFLT----TAIIEMYAK 152
++++ +EVT+V VL+A + G+ + G N+ LT +A+I+MY K
Sbjct: 306 ERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTK 364
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 67/145 (46%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY Q F E L F L+ V DE V +L+A + GA + + L+ +
Sbjct: 208 MISGYVQNSCFKEGLYLFRLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKT 267
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SLS + S YA G + LA RD V AMISG + G AL+ F
Sbjct: 268 VSLSIRLSTSLLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFS 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++E G+ D++T + V A S G
Sbjct: 328 EMEKTGIKPDDITFIAVFTACSYSG 352
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 53/116 (45%), Gaps = 21/116 (18%)
Query: 58 LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
LS+ S S S YA G + AR D AMISGY Q F E L F L
Sbjct: 169 LSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRLL 228
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ V DE V +L+A + GALD G +I L+T++++MYAK
Sbjct: 229 QLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTVSLSIRLSTSLLDMYAK 284
>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 593
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY+Q GR E+LE F ++++ +EVT+V V++A + G+ L +++
Sbjct: 273 MIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR 332
Query: 56 LDLSSY---SLSSKTSRYAHSGRIRLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+SY +L +R H GR R + ++ +MI G + G +A+ +
Sbjct: 333 LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYE 392
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ GV +E+T V +LAA + G +D G
Sbjct: 393 KMAENGVQPNEITFVALLAACTHAGLVDQG 422
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MI+ Y+ G F EAL F ++ S G + +T+ V + + G K ++ E D
Sbjct: 173 MIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDD 232
Query: 58 LSSYSLSSK------TSRYAHSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPFGK 107
L + + + R R RD V+ MI+GY+Q GR E+LE F +
Sbjct: 233 LQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFER 292
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ +EVT+V V++A + G+ + + +L +A+I+MY +
Sbjct: 293 MKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTR 349
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R S +MI+ Y+ G F EAL F ++ S G + +T+ V + + G LD GK
Sbjct: 165 RTSASWNSMIACYAHGGEFREALALFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRV 224
Query: 138 ---------SNIFLTTAIIEMYAK 152
N+ + TA++EMY K
Sbjct: 225 RDLIGEDDLQNVIVHTALMEMYVK 248
>gi|297834550|ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330997|gb|EFH61416.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 655
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG + R E+ F +++S G+ D T++ +LTA S A ++
Sbjct: 380 LISGCVENCRAEESFRLFHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNG 439
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y++++ Y G++ +A RD VS M+ G+ G EAL F
Sbjct: 440 YAVNTSICNALMDMYTKCGKLYVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFN 499
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GVH DEVT++ +L+A S G +D GK
Sbjct: 500 SMQDTGVHPDEVTLLAILSACSHSGLVDEGK 530
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G+ G EAL F ++ GVH DEVT++ +L+A S G K+L +
Sbjct: 481 MLFGFGIHGLGKEALSLFNSMQDTGVHPDEVTLLAILSACSHSGLVDEGKQLFNSMSRGD 540
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+++ + Y M ++AG +EA + K+
Sbjct: 541 FNVIPRLDHY---------------NCMTDLLARAGYLDEAYDFVNKM 573
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y G +AL+ + K+ + GV + T VL A +G A K + + S+
Sbjct: 74 MIRAYVSNGFAEKALDLYYKMLNSGVRPTKFTYPFVLKACAGLRAIEDGKLIHSHVKCSN 133
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ YA G + +A RD V+ AMISG+S + + F
Sbjct: 134 FAADMYVCTALVDFYAKCGELDMAIKVFDEMPKRDIVAWNAMISGFSLHCCLTDVIGLFL 193
Query: 107 KLESLGVHTDEVTMVVVLAASSG-PGALDFGK------------SNIFLTTAIIEMYAK 152
+ + ++ +V + + G GAL GK +++ + T I+++YAK
Sbjct: 194 DMRRSDCLSPNLSTIVGMFPALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAK 252
>gi|356571125|ref|XP_003553731.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g05240-like [Glycine max]
Length = 552
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 33/185 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY + EAL+ F + GV +E+TMV L + + + + + +
Sbjct: 165 LIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQHIRKAG 224
Query: 61 YSLSSKTSR------------YAHSGRIRLARD---------PVSCKAMISGYSQAGRFN 99
Y TS YA G ++ARD VS +MI+ Y+Q R
Sbjct: 225 YDPFMSTSNSNIILATAILEMYAKCGSFKIARDLFNKMPQRNIVSWNSMINAYNQYERHK 284
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
EAL+ F + + G++ D+ T + VL+ + AL G+ ++I L TA++
Sbjct: 285 EALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTGIGTDISLATALL 344
Query: 148 EMYAK 152
+MYAK
Sbjct: 345 DMYAK 349
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+ Y+Q R EAL+ F + + G++ D+ T + VL+ + A L + +
Sbjct: 273 MINAYNQYERHKEALDLFFDMWTSGIYPDKATFLSVLSVCAHLCALALGQTVHAYLXKTG 332
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I L + + +KT + +I RD V +MI+G + G NEAL F
Sbjct: 333 IGTDISLATALLDMYAKTGGLGSAQKIFSSLQKRDVVMWTSMINGLAMHGDGNEALGMFQ 392
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYA 151
+ E + D +T + VL A S G ++ K + L T EMY+
Sbjct: 393 TMHEDSSLVPDHITYIGVLFACSHVGLVEEAKKHFRLMT---EMYS 435
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
V+ +I+GY + EAL+ F + GV +E+TMV L + D G+
Sbjct: 160 VAWTCLIAGYVNNNQPYEALKVFKDMSHCGVEPNEITMVNALIXCARSRDFDTGQWVHQH 219
Query: 138 --------------SNIFLTTAIIEMYAK 152
SNI L TAI+EMYAK
Sbjct: 220 IRKAGYDPFMSTSNSNIILATAILEMYAK 248
>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
Length = 706
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G +ALE F L + + +T +L A +G A L +EL + E
Sbjct: 284 MISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNE 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S+ + YA GR+ LA +D + ++I+ +SQ G+ EA+ F
Sbjct: 344 LEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFR 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D VT+ L+A + AL +GK S++F +A+I MYAK
Sbjct: 404 QMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAK 461
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQ-----IELDLSSYSLSSKTSRYAHSGRIRLA 79
GV D+ T V+ +G L K +Q + DL + SS YA +G I A
Sbjct: 5 GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDA 64
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R D V MI+GY Q G + A++ F + S D VT VL+ S
Sbjct: 65 RRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSE 124
Query: 131 GALDFGKS 138
+++G+
Sbjct: 125 AMVEYGRQ 132
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY Q G + A++ F + S D VT VL+ S ++L +
Sbjct: 82 MINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSG 141
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ + Y+ ++ AR D V MI GY Q G ++A F
Sbjct: 142 LDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFN 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ S G+ D +T L + + +L K +++L +A+I++Y K
Sbjct: 202 EMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFK 259
Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 73/182 (40%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY Q G ++A F ++ S G+ D +T L + + + KE+ +
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHG 242
Query: 61 YSLSSKTSRYAHSGRIRL---ARDPV-SCK--------------AMISGYSQAGRFNEAL 102
L Y +S I L RD V +CK AMISGY G +AL
Sbjct: 243 VILDV----YLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDAL 298
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
E F L + + +T +L A +G A+ G+ + +AI+ MY
Sbjct: 299 EIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMY 358
Query: 151 AK 152
AK
Sbjct: 359 AK 360
>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g11460-like [Cucumis sativus]
Length = 614
Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
++SGY + ++A+ F ++ GV + VT++ ++ A P G+ + L+
Sbjct: 114 LVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYG 173
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
D ++ + Y G + A+ PV S AM+SGY+Q G LE +
Sbjct: 174 FDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYR 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GVH D VT+V VL++ + GA G SN FL A+I MYA+
Sbjct: 234 NMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYAR 291
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G LE + ++ GVH D VT+V VL++ + GA + E++ ++ S
Sbjct: 215 MVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASG 274
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ + YA G + A R VS A+I GY G A++ F
Sbjct: 275 FTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFK 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D V VL+A S G D G
Sbjct: 335 EMIRSGIEPDGTAFVCVLSACSHAGLTDQG 364
>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G + KE LQ
Sbjct: 258 MIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNG 317
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L + + C ++I G + G EAL+ F
Sbjct: 318 FVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFA 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E V + VT V V A + G +D G+
Sbjct: 378 KMEMESVKPNAVTFVSVFTACTHAGLVDEGR 408
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D +S MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G L+ GK
Sbjct: 250 KDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEV 309
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +A+++MY+K
Sbjct: 310 HMYTLQNGFVLDVYIGSALVDMYSK 334
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G + G EAL+ F K+E V + VT V V TA + G + + + +
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM-IDD 417
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
YS+ S Y M+ +S+AG EALE G +E
Sbjct: 418 YSIVSNVEHYG---------------GMVHLFSKAGLIYEALELIGNME 451
>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
Length = 577
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G + KE LQ
Sbjct: 258 MIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNG 317
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L + + C ++I G + G EAL+ F
Sbjct: 318 FVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFA 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E V + VT V V A + G +D G+
Sbjct: 378 KMEMESVKPNAVTFVSVFTACTHAGLVDEGR 408
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D +S MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G L+ GK
Sbjct: 250 KDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEV 309
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +A+++MY+K
Sbjct: 310 HMYTLQNGFVLDVYIGSALVDMYSK 334
Score = 37.4 bits (85), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G + G EAL+ F K+E V + VT V V TA + G + + + +
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM-IDD 417
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
YS+ S Y M+ +S+AG EALE G +E
Sbjct: 418 YSIVSNVEHYG---------------GMVHLFSKAGLIYEALELIGNME 451
>gi|224114537|ref|XP_002332354.1| predicted protein [Populus trichocarpa]
gi|222832075|gb|EEE70552.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I Y++ G N+AL+ + + G+ D T+ +VL A+ + L ++L ++
Sbjct: 47 LIRCYTRLGAPNKALQIYVSMSHAGISPDNYTLPIVLKAACQCFSMELGRQLHSIAIRLG 106
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+L+ Y S S Y+ SG L R S A+I G Q GR E +E F
Sbjct: 107 LELNEYCESGFISLYSKSGDFGDAYKVFEENLERKLGSWNAIIGGLCQGGRAKEVIEMFI 166
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL--------------DFGKSNIFLTTAIIEMYAK 152
++ S G D+VTMV V +A G L F K ++ + ++I+MY K
Sbjct: 167 EMRSCGFKPDDVTMVSVTSACGILGDLHLALQLHKYVFQAKSFVKPDMLMLNSLIDMYGK 226
>gi|255552093|ref|XP_002517091.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543726|gb|EEF45254.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI GYS + +AL+ F + V +EVTM+ VL+A S G ++ K
Sbjct: 330 MIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKSIHEYVRRKN 389
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLAR---- 80
L + ++L + +S +S + YA +G + +AR
Sbjct: 390 LNLSVNLMNAILDMYVKCGCLVAAREIFDSMGTKDVFSWTSMVNGYAKTGELEIARKFFD 449
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ VS AMI+GYSQ + +A+ F + G+ E T+V VL+A G LD
Sbjct: 450 DMPKRNVVSWNAMIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDL 509
Query: 136 GK-------------SNIFLTTAIIEMYAK 152
G+ +++ + A+I+MYAK
Sbjct: 510 GRLIHMYHIERKQKGTSVIIANALIDMYAK 539
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
ARD VS +MI GYS + +AL+ F + V +EVTM+ VL+A S G L GKS
Sbjct: 321 ARDVVSWTSMIDGYSTHDYYTDALKLFDSMLLSDVEPNEVTMISVLSACSQKGDLSLGKS 380
Query: 139 ------------NIFLTTAIIEMYAK 152
++ L AI++MY K
Sbjct: 381 IHEYVRRKNLNLSVNLMNAILDMYVK 406
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+GYSQ + +A+ F + G+ E T+V VL+A G L + + IE
Sbjct: 462 MIAGYSQNNQPKKAIVLFHHMVGEGLIPIENTLVCVLSACGQLGYLDLGRLIHMYHIERK 521
Query: 58 LSSYSL---SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
S+ ++ YA G I A RD VS +MI+ + G +AL F
Sbjct: 522 QKGTSVIIANALIDMYAKCGVIDAAARVFNGMPGRDLVSWNSMIAACASHGHAKQALLMF 581
Query: 106 GKLESLGVHTDEVT 119
G++ G D++T
Sbjct: 582 GQMIHEGFKPDDIT 595
>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 642
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY+Q GR E+LE F ++++ +EVT+V V++A + G+ L +++
Sbjct: 322 MIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR 381
Query: 56 LDLSSY---SLSSKTSRYAHSGRIRLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L+SY +L +R H GR R + ++ +MI G + G +A+ +
Sbjct: 382 LPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISLYE 441
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ GV +E+T V +LAA + G +D G
Sbjct: 442 KMAENGVQPNEITFVALLAACTHAGLVDQG 471
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MI+ Y+ G F EAL F ++ S G + +T+ V + + G K ++ E D
Sbjct: 222 MIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRVRDLIGEDD 281
Query: 58 LSSYSLSSK------TSRYAHSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPFGK 107
L + + + R R RD V+ MI+GY+Q GR E+LE F +
Sbjct: 282 LQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFER 341
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ +EVT+V V++A + G+ + + +L +A+I+MY +
Sbjct: 342 MKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQRLPLTSYLGSALIDMYTR 398
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R S +MI+ Y+ G F EAL F ++ S G + +T+ V + + G LD GK
Sbjct: 214 RTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITSVFSICAKSGDLDTGKRV 273
Query: 138 ---------SNIFLTTAIIEMYAK 152
N+ + TA++EMY K
Sbjct: 274 RDLIGEDDLQNVIVHTALMEMYVK 297
>gi|302790632|ref|XP_002977083.1| hypothetical protein SELMODRAFT_34765 [Selaginella moellendorffii]
gi|300155059|gb|EFJ21692.1| hypothetical protein SELMODRAFT_34765 [Selaginella moellendorffii]
Length = 295
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 15/163 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
MI+ Y + G F E+LE + + G D + V L AS G GA I L+
Sbjct: 51 MIAAYGERGYFQESLELWKIMRLEGAMPDLIAFVTALKSCCCPASLGDGALIHWMILESG 110
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S + YA GR+ LA R S +M++ Y+Q G ++ +
Sbjct: 111 LGSNVIIQNSLLAMYARCGRLELAQLLFDGMPERSVFSWNSMVAAYAQHGHLDQVFQSLK 170
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI-FLTTAIIE 148
++++ GV D VT V VL+A SG G L G+S+ F+ I E
Sbjct: 171 RMQNEGVKPDSVTFVSVLSACSGAGLLVEGRSHFEFVKRHIRE 213
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
ARD + MI+ Y + G F E+LE + + G D + V L + P +L G
Sbjct: 42 ARDVILWTEMIAAYGERGYFQESLELWKIMRLEGAMPDLIAFVTALKSCCCPASLGDGAL 101
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN+ + +++ MYA+
Sbjct: 102 IHWMILESGLGSNVIIQNSLLAMYAR 127
>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 793
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---GPG------AWILAKE 51
MIS + Q G +EAL F +++ + D VT+ +L+A+S P ++L
Sbjct: 362 MISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG 421
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E + SY + YA SG I A RD + +M+SGY+Q G ++
Sbjct: 422 IQFE-GMDSYLID----MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQ 476
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
A ++ V + VT+ +L A + G +D+GK N+F+ TA+I+
Sbjct: 477 AFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALID 536
Query: 149 MYAK 152
MY+K
Sbjct: 537 MYSK 540
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY+Q G ++A ++ V + VT+ +L A + G K+L + +
Sbjct: 464 MMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRND 523
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ Y+ SG I A + V+ MI GY Q G AL F
Sbjct: 524 LDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFH 583
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ D VT+V VL+A S G +D G
Sbjct: 584 RMQKSGIQPDAVTLVAVLSACSYAGLVDEG 613
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKEL------- 52
MIS + Q E ++ F + +ES DEVT++ ++A+S + LA++L
Sbjct: 260 MISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN 319
Query: 53 ----QIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
Q+ + + ++ S+ + S +I +D VS MIS + Q G +EAL F
Sbjct: 320 VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLF 379
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN--IFLTTAI---------IEMYAK 152
+++ + D VT+ +L+A+S D GK L I I+MYAK
Sbjct: 380 YEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAK 437
>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
Length = 472
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT------ASSGPGAWILAKELQI 54
M++GY+Q G A++ FG+L G+ +E T +L AS G G ++
Sbjct: 69 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 128
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S S+ + YA G I A +D VS +MISGY+Q G+ +AL+ F
Sbjct: 129 RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 188
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V D VT + V AA + G ++ G+
Sbjct: 189 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 220
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL------AASSGPGAL 133
+D V+ AM++GY+Q G A++ FG+L G+ +E T +L AS G G
Sbjct: 61 KDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQ 120
Query: 134 DFG-------KSNIFLTTAIIEMYAK 152
G S++ +++A++ MYAK
Sbjct: 121 FHGFAIKSRLDSSLCVSSALLTMYAK 146
>gi|125587253|gb|EAZ27917.1| hypothetical protein OsJ_11878 [Oryza sativa Japonica Group]
Length = 583
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q+G +A+ F K++ V + +T+V +L+A + L KEL ++ +S
Sbjct: 320 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 379
Query: 61 YS-----------LSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
K Y ++ RI A RD +S A+ISGY+ G EAL+
Sbjct: 380 MEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLD 439
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV + T L A + AL +G+ SN+F+ +++I+MY +
Sbjct: 440 DMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMR 497
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y Q G +AL F ++ S G +E T+ VL A + A K+L +
Sbjct: 219 MITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKM 278
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ + YA G + A R+ ++ +MISGY+Q+G +A+ F
Sbjct: 279 YKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFR 338
Query: 107 KLESLGVHTDEVTMVVVLAAS 127
K++ V + +T+V +L+A
Sbjct: 339 KMKMRRVFVNNLTIVGLLSAC 359
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 87/182 (47%), Gaps = 32/182 (17%)
Query: 1 MISGYSQAGRFNEALEP---FGKLESLGV-HTDEVTMVVVLTASS-----GPGAWILAKE 51
MI G SQ+ + EP F K+ G + + TM VL A S G + A
Sbjct: 130 MIRGCSQSQ--TPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANV 187
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
L+ S + ++ + YA I LA R+ V+ MISGY++ G NEAL
Sbjct: 188 LKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEAL 247
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F ++ GV DEVTMV V++A + GALD GK +++ L+TA++ MY
Sbjct: 248 GLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMY 307
Query: 151 AK 152
AK
Sbjct: 308 AK 309
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G SQ GR EA+ F ++ G DEVTMV V +A G LA +L + +
Sbjct: 201 IIGGLSQGGRAKEAVTMFMEMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVYQAK 260
Query: 61 YS-------LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S L+S Y GR+ LA + S +MI GY+ G+ +ALE
Sbjct: 261 TSERSDTLTLNSLVDMYGKCGRMDLAYRVFSRMDEPNVSSWTSMIVGYAMHGQLYDALEC 320
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
F + GV + VT + VL+A GA+ GK + T + +M
Sbjct: 321 FRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKYYFDMMTTAYGLVPRM 369
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
+I Y++ + AL + + GV D T+ +VL A ++G G + + ++
Sbjct: 100 IIRSYTRLEAHHYALSIYIAMSRAGVSPDSYTIPIVLKAVCQAFATGFGRQVHSVAIRHG 159
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+L+ Y S S Y+ +G + A R S A+I G SQ GR EA+ F
Sbjct: 160 LELNEYCESGFISVYSKAGEFQNAHKVFEQNRFRKLGSWNAIIGGLSQGGRAKEAVTMFM 219
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------------KSNIFLTTAIIEMYAK 152
++ G DEVTMV V +A G LD +S+ ++++MY K
Sbjct: 220 EMRKCGFEPDEVTMVSVTSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGK 279
>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IE--- 55
MI+GY Q G +ALE FG++ G DE T+V VL+A + G K++ IE
Sbjct: 249 MIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKG 308
Query: 56 LDLSSYSLSSKTSRYAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + LS YA G + RL R+ AMI+G++ G+ NE LE
Sbjct: 309 IAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLD 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+++ + D VT + VL+A + G +
Sbjct: 369 RMQESNIRLDAVTFITVLSACAHGGLM 395
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLS 59
MI G+++ G A + F K+ D V V++ + G A+E+ ++ + +
Sbjct: 154 MIGGFARNGDTLTARKFFDKVPY--ELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERN 211
Query: 60 SYSLSSKTSRYAHSGRIRLA-----RDPVS----CKAMISGYSQAGRFNEALEPFGKLES 110
+ SS Y G + A R PV +MI+GY Q G +ALE FG++
Sbjct: 212 YFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGV 271
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G DE T+V VL+A + G LD GK N F+ + +I+MYAK
Sbjct: 272 DGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAK 325
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G++ G+ NE LE +++ + D VT + VL+A + G ++++ L++ +
Sbjct: 350 MIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGG--LMSEALEVISKMEE 407
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
Y + Y M+ +AG+ EA E ++
Sbjct: 408 YGIEMGIRHYG---------------CMVDLLGRAGKLKEAYELIKRM 440
>gi|255541070|ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548779|gb|EEF50268.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 429
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGA-----WILAKELQI 54
MI GYSQ + +EAL+ F +++S + D+VT+V VL A + GA WI
Sbjct: 253 MIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLK 312
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
++D S ++ YA G + AR + S A+I+G++ G +EAL F
Sbjct: 313 KIDRSINVCTALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAF 372
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ GV ++VTM+ VL+A + G ++ GK
Sbjct: 373 SEMKREGVKPNDVTMISVLSACNHGGLVEEGK 404
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLAASSGPGALDFG-- 136
R+ S AMI GYSQ + +EAL+ F +++S + D+VT+V VL A + GALD G
Sbjct: 245 RNLFSWNAMIGGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSW 304
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+I + TA+++MYAK
Sbjct: 305 IHQFARLKKIDRSINVCTALVDMYAK 330
>gi|302760949|ref|XP_002963897.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
gi|300169165|gb|EFJ35768.1| hypothetical protein SELMODRAFT_80086 [Selaginella moellendorffii]
Length = 714
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ +SQ G +AL F ++ G+H D ++ V L A + A K L EL L+S
Sbjct: 309 LLAAFSQNGHARQALGIFAGMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLAS 368
Query: 61 Y-------SLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
SL++ + YA GR+ AR D + +M+ Y+Q+GR EA +
Sbjct: 369 QGEIFVEASLATALVNFYAKCGRLDEARSLFDAMAFCDAILLNSMLGAYAQSGRAGEAAD 428
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F + G+H D VT V +++A S G LD G
Sbjct: 429 LFQRAILSGIHPDAVTFVSMVSACSHAGLLDLG 461
Score = 41.2 bits (95), Expect = 0.15, Method: Composition-based stats.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 36/181 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G +G + A + F ++ TD V ++TA + G A++L + +
Sbjct: 215 MIQGCVHSGDLHRAWDLFKRMPL----TDVVIWTAIVTAFAHSGFLQEARDLFDAIPIKD 270
Query: 61 ----------YSLSSKTSR----YAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y L + +R + +G +R D +S A+++ +SQ G +AL F
Sbjct: 271 AAAVNAMIAAYGLHGEIARAKDLFDSAGDLR---DVISWNALLAAFSQNGHARQALGIFA 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIF----LTTAIIEMYA 151
++ G+H D ++ V L A + AL GK IF L TA++ YA
Sbjct: 328 GMDLEGIHPDGISFVSALDACTILTALREGKLLHEELLLASQGEIFVEASLATALVNFYA 387
Query: 152 K 152
K
Sbjct: 388 K 388
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 87/182 (47%), Gaps = 32/182 (17%)
Query: 1 MISGYSQAGRFNEALEP---FGKLESLGV-HTDEVTMVVVLTASS-----GPGAWILAKE 51
MI G SQ+ + EP F K+ G + + TM VL A S G + A
Sbjct: 61 MIRGCSQSQ--TPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANV 118
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
L+ S + ++ + YA I LA R+ V+ MISGY++ G NEAL
Sbjct: 119 LKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEAL 178
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F ++ GV DEVTMV V++A + GALD GK +++ L+TA++ MY
Sbjct: 179 GLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMY 238
Query: 151 AK 152
AK
Sbjct: 239 AK 240
>gi|255569195|ref|XP_002525566.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535145|gb|EEF36825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 563
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MI+G + G EA F K+ G+ +VT++ VL A + G K + ++
Sbjct: 315 MIAGCVENGDPEEAKVLFKKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLK 374
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++S S Y+ ++ A R VS AMI GY+Q GR NEAL F
Sbjct: 375 LDSNVSVMNSLISMYSKCKQVDFAANLFENLQNRTLVSWNAMILGYAQNGRLNEALNFFC 434
Query: 107 KLESLGVHTDEVTMVVVLAASS------------GPGALDFGKSNIFLTTAIIEMYAK 152
+++S + D TMV V+ A + G +F+ TA+++MYAK
Sbjct: 435 EMQSQNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRLLDDTVFVMTALVDMYAK 492
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------GPGAWILAKE 51
+ISGY+Q G ALE K+ G D VT+V VL A + A+++
Sbjct: 214 IISGYAQNGLTKVALELVPKIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAG 273
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPF 105
+++S+ +L S+ G R+ +R V+ +MI+G + G EA F
Sbjct: 274 FDWLVNIST-ALVDMYSKCDSLGTARVIFDGMGSRTVVTWNSMIAGCVENGDPEEAKVLF 332
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ G+ +VT++ VL A + G L+ GK SN+ + ++I MY+K
Sbjct: 333 KKMMDEGLQPTDVTVMEVLHACADSGDLEQGKFVHKLVEDLKLDSNVSVMNSLISMYSK 391
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G+++ + AL F +++ V +LT KE+ +L S
Sbjct: 113 MLKGFAKNSSLDSALLFFCRMKHDNVRPVVYNFTYLLTLCGDNFDLRRGKEIHGQLITSG 172
Query: 61 YS-----LSSKTSRYAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S +++ S Y I R+ RD V +ISGY+Q G ALE
Sbjct: 173 FSWNLFAMTAVVSLYCKCRVIGDAYKMFDRMTERDLVCWNTIISGYAQNGLTKVALELVP 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIEMYAK 152
K+ G D VT+V VL A + +L FGK+ + ++TA+++MY+K
Sbjct: 233 KIFEEGHRPDSVTIVSVLPAVADIRSLRFGKAIHAYVIRAGFDWLVNISTALVDMYSK 290
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 28/167 (16%)
Query: 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSLSSKTS 68
AL F + GV D T V A + GA ++LQ L +S +S S
Sbjct: 122 ALRLFVDMVDDGVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLIS 181
Query: 69 RYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
Y G LAR S A+++ Y++AGR+ E +E FG + G DE
Sbjct: 182 FYGKCGEADLARRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDE 241
Query: 118 VTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+MV L+A + GA D G+S N F++T++++MYAK
Sbjct: 242 SSMVSALSACAHLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAK 288
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+++ Y++AGR+ E +E FG + G DE +MV L+A + GA + + + L
Sbjct: 212 LLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNT 271
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+++ +S YA G I A ++ + AM+SG + G +ALE F
Sbjct: 272 ARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFD 331
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G D V VL A S G L+ G
Sbjct: 332 AMVREGHRPDAAVYVGVLNACSRAGLLEEG 361
>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g25060, mitochondrial; Flags: Precursor
gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 601
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M++G++QAG+ +A+E + ++++ G D V M+ +L AS G + + + +
Sbjct: 188 MVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTG 247
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ +S YA G I +A + VS ++ISG++Q G N+A E
Sbjct: 248 LPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVV 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF---LTTAIIEMYAK 152
+++SLG D VT+V VL A S G+L G K ++ TA+++MY+K
Sbjct: 308 EMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTATALMDMYSK 364
>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
Length = 941
Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M++ YSQ G + EALE F +++ G D+V V+ L A + G +++
Sbjct: 29 MMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVGSG 88
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I + S ++ K + ++ L RD VS AM++ Y+Q G +++ALE
Sbjct: 89 LTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLS 148
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ GV ++VT V ++ + LD G+
Sbjct: 149 RMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
A++ S M++ YSQ G + EALE F +++ G D+V V+ L A + G LD G+
Sbjct: 20 AKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAASGELDHGRQ 79
Query: 138 -----------SNIFLTTAIIEMYAK 152
SNI ++ +++ MY K
Sbjct: 80 IHSSVVGSGLTSNIIISNSLVNMYGK 105
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+G SQ G++ E L F K++ GV +EVT + ++ G I A+ L+
Sbjct: 231 MIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESP 290
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S+ +S S Y G + A RD V+ AM++ +Q G EA+
Sbjct: 291 FCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLR 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G ++VT + VL A + AL G+
Sbjct: 351 RMDMEGFGANKVTYLSVLEACANLEALSQGR 381
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 30/173 (17%)
Query: 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSK--- 66
+F +ALE F +E G+ ++E T++ +L A G LA+++ + +S
Sbjct: 443 KFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVG 502
Query: 67 ---TSRYAHSGRIRLARDP---------VSCKAMISGYSQA--GRFNEALEPFGKLESLG 112
+ YA G + A+ V+ +++ Y+Q+ G A + F ++E+ G
Sbjct: 503 NSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEG 562
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
+ EVT V L A + L+ G+S ++ L II MY K
Sbjct: 563 IKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGK 615
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY++AG A+ F +++ GV DE+TMV VL+A + GA L K L+ ++ +
Sbjct: 304 MIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKN 363
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S + +A G + A R VS +MI G + GR EA+ F
Sbjct: 364 IMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMHGRGLEAVLVFD 423
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ GV D+V + VL+A S G +D G N+F IE Y M
Sbjct: 424 EMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCM 476
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V+ AMI GY++AG A+ F +++ GV DE+TMV VL+A + GAL+ GK
Sbjct: 296 KDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELGKWL 355
Query: 138 ------SNIF----LTTAIIEMYAK 152
NI L A+I+M+AK
Sbjct: 356 ESYIERKNIMRSVELCNALIDMFAK 380
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 19/138 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR EA+ F ++ GV D+V + VL+A S G +D
Sbjct: 405 MIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGL----------VDKGH 454
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y ++ + ++ +I + C M+ S+AGR NEALE + ++ V ++V
Sbjct: 455 YYFNTMENMFSIVPKI----EHYGC--MVDMLSRAGRVNEALE---FVRAMPVEPNQVIW 505
Query: 121 VVVLAASSGPGALDFGKS 138
++ A G L G+S
Sbjct: 506 RSIVTACHARGELKLGES 523
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-------ILAKELQ 53
M+SG +++G F E+L F K++ + DE+T+V VL+A + GA +L + +
Sbjct: 83 MLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHLLIDKFE 142
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I DL ++ YA G I LA R+ + AMI G + G +A+
Sbjct: 143 INCDLVLE--TALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAISL 200
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++E + D+VT + +L A S G +D G
Sbjct: 201 FDQMEXDKLMPDDVTFIALLCACSHAGLVDEG 232
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 30/160 (18%)
Query: 20 KLESLGVHTDEVTMVVVLTASSGPGAW-------ILAKELQIELDLSSYS----LSSKTS 68
KL++L DEVTMV ++ A + G +KEL ++ +LS + + K
Sbjct: 3 KLDNL--RPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCD 60
Query: 69 RYAHS----GRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124
+ RIR +D +S +M+SG +++G F E+L F K++ + DE+T+V VL
Sbjct: 61 DIESAQEVFNRIR-EKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVL 119
Query: 125 AASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+A + GALD GK ++ L TA+++MYAK
Sbjct: 120 SACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAK 159
>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic-like [Cucumis sativus]
Length = 817
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 87/184 (47%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---GPG------AWILAKE 51
MIS + Q G +EAL F +++ + D VT+ +L+A+S P ++L
Sbjct: 386 MISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNG 445
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E + SY + YA SG I A RD + +M+SGY+Q G ++
Sbjct: 446 IQFE-GMDSYLID----MYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQ 500
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
A ++ V + VT+ +L A + G +D+GK N+F+ TA+I+
Sbjct: 501 AFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALID 560
Query: 149 MYAK 152
MY+K
Sbjct: 561 MYSK 564
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY+Q G ++A ++ V + VT+ +L A + G K+L + +
Sbjct: 488 MMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRND 547
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ Y+ SG I A + V+ MI GY Q G AL F
Sbjct: 548 LDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFH 607
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ D VT+V VL+A S G +D G
Sbjct: 608 RMQKSGIQPDAVTLVAVLSACSYAGLVDEG 637
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKEL------- 52
MIS + Q E ++ F + +ES DEVT++ ++A+S + LA++L
Sbjct: 284 MISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKN 343
Query: 53 ----QIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
Q+ + + ++ S+ + S +I +D VS MIS + Q G +EAL F
Sbjct: 344 VAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLF 403
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN--IFLTTAI---------IEMYAK 152
+++ + D VT+ +L+A+S D GK L I I+MYAK
Sbjct: 404 YEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSYLIDMYAK 461
>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 570
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY Q RF+EALE F +++ G+ D +V +LT + GA WI +
Sbjct: 250 MMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENR 309
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G I A RD S ++I G + G AL+ +
Sbjct: 310 VTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYY 369
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E++GV D +T V VL A + G + G+
Sbjct: 370 EMENVGVRLDAITFVAVLTACNHGGFVAEGR 400
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y +GRI AR D V AM++GY Q RF+EALE F +++ G+ D +
Sbjct: 223 YVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVL 282
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V +L + GAL+ GK + + TA+++MYAK
Sbjct: 283 VSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAK 326
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ + F + L FG+L G++ D T+ VVL + G + ++
Sbjct: 17 MLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAG 76
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ SY +S YA G+I + RD VS +IS Y GRF +A+ F
Sbjct: 77 LEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFK 136
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
++ + + DE T+V L+A S L+ G+ ++ + A+++M+ K
Sbjct: 137 RMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCK 194
>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 667
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 91/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYS+ G +EA+ F ++ LGV D T+V +L+ASS L + + + + ++
Sbjct: 209 MIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITG 268
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYS------------- 93
+ S + YA G ++ A+ D VS +M++ Y+
Sbjct: 269 VEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFN 328
Query: 94 ------------------QAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
Q G++ EA+E F ++ GV D+ T+V +L+ S G L
Sbjct: 329 HMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLAL 388
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GK ++ L ++I+MYAK
Sbjct: 389 GKQAHCYICDNIITVSVTLCNSLIDMYAK 417
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I Q G++ EA+E F ++ GV D+ T+V +L+ S G L K+ +
Sbjct: 341 IICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNI 400
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S +S YA G ++ A ++ VS +I + G EA+E F
Sbjct: 401 ITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFK 460
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--NIFLTTAII----EMYAKM 153
+++ G++ DE+T +L+A S G +D G+ +I ++T I E YA M
Sbjct: 461 SMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACM 513
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAW--ILAKELQIELD 57
+I GYS + ++L F ++ S G ++ T VL A + P W ++ I+L
Sbjct: 108 LIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLG 167
Query: 58 LSSYSLSSKTSRYAH-SGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ A+ + R+ L+ R VS +MI+GYS+ G +EA+ F
Sbjct: 168 MGPHACVQNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQ 227
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ LGV D T+V +L+ASS LD G+ + +T A+I+MYAK
Sbjct: 228 EMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAK 285
>gi|255547359|ref|XP_002514737.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546341|gb|EEF47843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 374
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI G+ ++ A E + +++ G+ D T ++ G+ +L K++ ++
Sbjct: 103 MIRGFGKSNEPQRAFEYYKRMQEEGLMADNFTFSFLIKVCGQLGSVLLGKQMHCSVLKYG 162
Query: 58 LSSYSLSSKT--SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ T Y ++R + V+ +I Y GRF EAL+ F
Sbjct: 163 FESHVFVRNTLIHMYGIFKDFEISRQLFEEIPSPELVAWNTVIGCYVDCGRFKEALDMFS 222
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SN------IFLTTAIIEMYAK 152
++ L + DE T+VV+LAA S G LD G+ SN + + +II+MYAK
Sbjct: 223 RMLKLHIEPDEATLVVILAACSALGELDIGRWIHSCISNTGLGRFVEINNSIIDMYAK 280
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 72/166 (43%), Gaps = 31/166 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI-------- 47
+I Y GRF EAL+ F ++ L + DE T+VV+L A S G WI
Sbjct: 204 VIGCYVDCGRFKEALDMFSRMLKLHIEPDEATLVVILAACSALGELDIGRWIHSCISNTG 263
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
L + ++I +S YA G + A R+ V+ MI G + G
Sbjct: 264 LGRFVEIN--------NSIIDMYAKCGALEEAYEAFNKMSQRNTVTWNTMILGLATHGHT 315
Query: 99 NEALEPFGK-LESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
NEAL F K LE + D VT + VL A S G + ++ +T
Sbjct: 316 NEALVLFSKMLEQKLMEPDSVTFLGVLCACSHGGMTSINQFSVVVT 361
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS + +EAL F +++ G+ + +TMV VL A + G I ++
Sbjct: 293 IIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSG 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ + YA G + A ++ V+ A+ISGYSQ G +EAL F
Sbjct: 353 FESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFI 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++++ G+ D +V VL A + AL+ GK SN+ + T ++++YAK
Sbjct: 413 EMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAK 470
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 85/180 (47%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GYSQ G+ EAL F +++ G+ + T+V V+ + A K++
Sbjct: 192 IIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG 251
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
IE D+ ++ + YA G + A RD S A+I GYS + +EAL
Sbjct: 252 IESDV--LVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAF 309
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++ G+ + +TMV VL A + AL+ G+ SN + A++ MYAK
Sbjct: 310 FNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAK 369
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 30/179 (16%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
I GY + G +N+AL + +++ G++ D++ + V+ A L ++ D+ +
Sbjct: 92 IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD--LQAGRKVHEDIIAR 149
Query: 62 SLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
S S Y G + AR D VS A+I+GYSQ G+ EAL F
Sbjct: 150 GFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALF 209
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ + T+V V+ + AL+ GK S++ + ++ MYAK
Sbjct: 210 SEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAK 268
>gi|357507475|ref|XP_003624026.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360495|gb|ABN08505.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355499041|gb|AES80244.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 646
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 19/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASS-----GPGAWILA--KEL 52
MI+GY+Q G +A++ F ++ S DEVTMV V +A G G W ++ KE
Sbjct: 374 MIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGHLGELGLGNWAVSILKEN 433
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
I++ +S Y+ S S Y+ G ++ A RD VS +ISG+++ G E++E
Sbjct: 434 HIQISISVYN--SLISMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESIE 491
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ G+ D +T + +L A S G L G+
Sbjct: 492 LLLKMKEDGIEPDRITYIAILTACSHAGLLGEGQ 525
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 63/215 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELD-- 57
M+SGY+Q G E + F + S G V DE T V V+++ S G L++ + +LD
Sbjct: 237 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWVTVISSCSSLGDPCLSESIVRKLDDT 296
Query: 58 --------------------------------------LSSYSLSSKTSRYAHSGRIRLA 79
SS ++ S YA G + A
Sbjct: 297 VGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSA 356
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSG 129
R D VS +MI+GY+Q G +A++ F ++ S DEVTMV V +A
Sbjct: 357 RHLFDKMPQRDTVSWNSMIAGYTQNGESVKAIKLFEEMISSEDSKPDEVTMVSVFSACGH 416
Query: 130 PGALDFG-------KSN-----IFLTTAIIEMYAK 152
G L G K N I + ++I MY++
Sbjct: 417 LGELGLGNWAVSILKENHIQISISVYNSLISMYSR 451
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 68/166 (40%), Gaps = 35/166 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G EA F + + + +T ++T + G
Sbjct: 171 MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKG---------------- 214
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
+ KT+R R VS AM+SGY+Q G E + F + S G V DE T
Sbjct: 215 ---NLKTARMYFDKMPE--RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 269
Query: 120 MVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
V V+++ S G +S N F+ TA+++M+AK
Sbjct: 270 WVTVISSCSSLGDPCLSESIVRKLDDTVGFRPNYFVKTALLDMHAK 315
>gi|297722397|ref|NP_001173562.1| Os03g0644100 [Oryza sativa Japonica Group]
gi|53749418|gb|AAU90276.1| PPR repeat containing protein [Oryza sativa Japonica Group]
gi|108710059|gb|ABF97854.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
gi|215707171|dbj|BAG93631.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674740|dbj|BAH92290.1| Os03g0644100 [Oryza sativa Japonica Group]
Length = 616
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q+G +A+ F K++ V + +T+V +L+A + L KEL ++ +S
Sbjct: 353 MISGYAQSGHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNS 412
Query: 61 YS-----------LSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
K Y ++ RI A RD +S A+ISGY+ G EAL+
Sbjct: 413 MEENLQIGSTLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLD 472
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV + T L A + AL +G+ SN+F+ +++I+MY +
Sbjct: 473 DMLWDGVKPNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMR 530
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 14/141 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y Q G +AL F ++ S G +E T+ VL A + A K+L +
Sbjct: 252 MITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFGKQLHCAVLKKM 311
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ + YA G + A R+ ++ +MISGY+Q+G +A+ F
Sbjct: 312 YKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQSGHGEKAILLFR 371
Query: 107 KLESLGVHTDEVTMVVVLAAS 127
K++ V + +T+V +L+A
Sbjct: 372 KMKMRRVFVNNLTIVGLLSAC 392
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY Q G+ EA F K+++ V D TMV ++ A S A ++ +
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEAL 102
L +E + + S YA GRI L ARD VS MI+GY G EA
Sbjct: 438 LALETSICN----SLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEAT 493
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G D+VT + ++AA S G + GK
Sbjct: 494 TLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGK 528
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA +G I A +D +S A++SGY Q G+ EA F K+++ V
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404
Query: 115 TDEVTMVVVLAASSGPGALDFGKSN--------IFLTTAI----IEMYAK 152
D TMV ++ A S AL G+ + + L T+I I+MYAK
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAK 454
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I YS G F+ A++ + + V ++ T VL A S G I A +
Sbjct: 70 LIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVG 129
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ Y R A RD V+ AM++GY+ G ++ A+
Sbjct: 130 LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 189
Query: 107 KLESL-GVHTDEVTMVVVLAASSGPGA---------------LDFGKSNIFLTTAIIEMY 150
++ G+ + T+V +L + GA LD + + + TA+++MY
Sbjct: 190 DMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMY 249
Query: 151 AK 152
AK
Sbjct: 250 AK 251
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYSQ G + E+++ F ++ + D +T+ +L A G K + + S
Sbjct: 288 MICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 346
Query: 61 YSLSSKTSR-----YAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + S YA G + +D VS +MI+ Y Q G F+EA++ F
Sbjct: 347 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF- 405
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ V D VT V++L+ S+ G L GK SNI ++ +++MYAK
Sbjct: 406 KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAK 463
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-------LAKELQ 53
+ISGY+ G +NEALE + + +LGV D TM VL A G G+ L +++
Sbjct: 187 LISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG 246
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I+ D+ S+ K + RI + RD VS MI GYSQ G + E+++ F
Sbjct: 247 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 306
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D +T+ +L A G L+FGK + + +I MYAK
Sbjct: 307 EMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK 363
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-LDLS 59
+I + G F+EAL + + + + + D T V+ A +G + +AK + LD+
Sbjct: 86 IIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLDMG 145
Query: 60 -------SYSLSSKTSRYAHSGRIRLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+L R+ + R RD VS ++ISGY+ G +NEALE +
Sbjct: 146 FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYY 205
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ +LGV D TM VL A G G+++ G K ++ + ++ MY K
Sbjct: 206 RFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCK 263
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MI+ Y Q G F+EA++ F K+ V D VT V++L+ S+ G L KEL +L
Sbjct: 388 MINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMG 446
Query: 58 LSSYSLSSKT--SRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+S + S T YA G + ARD ++ +I+ + N L
Sbjct: 447 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 506
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + GV D TM+ +L S A GK S++ + +IEMY+K
Sbjct: 507 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 564
>gi|168044100|ref|XP_001774520.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674075|gb|EDQ60588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 350
Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKEL 52
IS +Q GR EAL F +++ V + VT + +L A GPG +IL ++L
Sbjct: 9 ISRLAQQGRRGEALAFFFRMQDEHVRPNRVTFLSLLKAFRGPGDLESGRRVHNFILERQL 68
Query: 53 QIELD----LSSYSLSSKTSRYAHSGRIRLA-RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ ++ L+ ++ AH R+ RD + AMI GY QAG ++ALE F
Sbjct: 69 ESDVRVGTALTCMYFRCGSALDAHRVFKRVQNRDIIVWNAMIEGYCQAGLRDKALEMFKD 128
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ D + + +L + +G LD GK ++ + TA++ MY +
Sbjct: 129 MKIAGLAPDVASFLSILKSCNGSVHLDDGKQLHKAIIESGFELSVRVQTALVNMYCR 185
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY QAG ++ALE F ++ G+ D + + +L + +G K+L + S
Sbjct: 109 MIEGYCQAGLRDKALEMFKDMKIAGLAPDVASFLSILKSCNGSVHLDDGKQLHKAIIESG 168
Query: 61 YSLSSK-----TSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
+ LS + + Y + +L R + MI+GY+Q EA F
Sbjct: 169 FELSVRVQTALVNMYCRCESLLDARKMFNKLPRKDIGLWTTMIAGYAQTDHGEEAFALFQ 228
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ +++T + +L A + P L GK S+ + TA+I Y+K
Sbjct: 229 AMRDTGLQPNKMTFLALLKACTRPEFLQKGKWLHNHIRCAGLDSDEKVGTALINAYSK 286
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GY+Q EA F + G+ +++T + +L A + P G W+
Sbjct: 210 MIAGYAQTDHGEEAFALFQAMRDTGLQPNKMTFLALLKACTRPEFLQKGKWLHNHIRCAG 269
Query: 56 LD---------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
LD +++YS R+ +S A+I+ YS+ R EAL+ F
Sbjct: 270 LDSDEKVGTALINAYSKCRSLVDARKVFDNLCTRNVISWTALIAAYSRNDRAEEALDLFE 329
Query: 107 KLESLGVHTDEVTMVVVLAAS 127
+++ GV +EVT V+ A
Sbjct: 330 QMKREGVQPNEVTRNTVVKAC 350
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
+SC A IS +Q GR EAL F +++ V + VT + +L A GPG L+ G+
Sbjct: 3 ISCNAAISRLAQQGRRGEALAFFFRMQDEHVRPNRVTFLSLLKAFRGPGDLESGRRVHNF 62
Query: 138 -------SNIFLTTAIIEMYAK 152
S++ + TA+ MY +
Sbjct: 63 ILERQLESDVRVGTALTCMYFR 84
>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 691
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y G + +A+E + ++ S+GV D VT VL A S A L K QI L +S
Sbjct: 381 MISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAA--LEKGKQIHLSISE 438
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S+ Y+ G + A +D VS MIS Y G+ EAL
Sbjct: 439 SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQ 498
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT++ VL+A G +D G
Sbjct: 499 FDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++SGYS+ F++ LE F +L + + D T V+ A G L + + + S
Sbjct: 77 LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS 136
Query: 60 SYSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
Y SS YA + RD S +IS + Q+G +ALE F
Sbjct: 137 GYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELF 196
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G++ES G + V++ V ++A S L+ GK + ++ +A+++MY K
Sbjct: 197 GRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGK 255
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GY G +E ++ G + T+ +L A S G +I ++
Sbjct: 280 MIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSV 339
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVS---------CKAMISGYSQAGRFNEALEPFG 106
++ Y S Y G LA S MIS Y G + +A+E +
Sbjct: 340 VNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYD 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S+GV D VT VL A S AL+ GK ++ L +A+++MY+K
Sbjct: 400 QMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 457
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GYSQ G +EA E + G E + VL+A G + A L I
Sbjct: 390 IIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIG 449
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ LS+ + Y G I A D VS AMI+GY++ G E ++ F
Sbjct: 450 LEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFE 509
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ +G+ D VT + VL+A S G +D G
Sbjct: 510 KIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+G +AG EAL F ++ V D T + L A + GA +E+ +
Sbjct: 188 IITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG 247
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D+SS+ ++ + Y G++ RD VS +I+ Q G+ A++ F
Sbjct: 248 FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFI 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V +E T V++ + +++G+ +++ + +I+ MYAK
Sbjct: 308 RMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAK 365
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Q G+ A++ F ++ V +E T V++ + ++L + L
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348
Query: 58 LSSYSLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L++ SLS + S YA G++ + RD VS +I+GYSQ G +EA E
Sbjct: 349 LAA-SLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELL 407
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G E + VL+A L+ GK + +A+I MY K
Sbjct: 408 SWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCK 466
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFG--KLESLGVHTDEVTMVVV-----LTASSGPGAWILAKELQ 53
+ISGY A +EAL F ++ES G+ D + + L + G + ++
Sbjct: 86 LISGYVNANDSSEALLLFKNMRVES-GLRIDPFILSLAHKACGLNSDVNYGELLHGYAVK 144
Query: 54 IELDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
L S + S+ Y +G+I R+ R+ VS A+I+G +AG EAL
Sbjct: 145 TGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVY 204
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ V D T + L A + GAL++G+
Sbjct: 205 FSEMWRSRVEYDSYTFAIALKACADSGALNYGR 237
>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
Length = 528
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKELQIE--- 55
MI+ Y+Q G EA+ + K+ ++G + + V + VL A + GA K + +
Sbjct: 125 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVR 184
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L+ + Y +S Y+ GR+ +A ++ +S AMI+GY GR EALE
Sbjct: 185 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 244
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G+ + +T + VLAA S G LD G+
Sbjct: 245 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 277
Score = 43.1 bits (100), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASSGPGALDF 135
+ RD VS +MI+ Y+Q G EA+ + K+ ++ G+ + V + VL A + GA+
Sbjct: 115 MERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 174
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK N+++ T+I++MY+K
Sbjct: 175 GKHIHNQVVRMGLEENVYVGTSIVDMYSK 203
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY Q G+ EA F K+++ V D TMV ++ A S A ++ +
Sbjct: 378 LLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRG 437
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEAL 102
L +E + + S YA GRI L ARD VS MI+GY G EA
Sbjct: 438 LALETSICN----SLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEAT 493
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G D+VT + ++AA S G + GK
Sbjct: 494 TLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGK 528
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA +G I A +D +S A++SGY Q G+ EA F K+++ V
Sbjct: 345 NSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ 404
Query: 115 TDEVTMVVVLAASSGPGALDFGKSN--------IFLTTAI----IEMYAK 152
D TMV ++ A S AL G+ + + L T+I I+MYAK
Sbjct: 405 PDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAK 454
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 30/182 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I YS G F+ A++ + + V ++ T VL A S G I A +
Sbjct: 70 LIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVG 129
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ Y R A RD V+ AM++GY+ G ++ A+
Sbjct: 130 LHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 189
Query: 107 KLESL-GVHTDEVTMVVVLAASSGPGA---------------LDFGKSNIFLTTAIIEMY 150
++ G+ + T+V +L + GA LD + + + TA+++MY
Sbjct: 190 DMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMY 249
Query: 151 AK 152
AK
Sbjct: 250 AK 251
>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 701
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M+SG+ + G A E FG + G D T++ +L+A + KE+ +
Sbjct: 196 MMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNG 255
Query: 58 -----LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+ + ++S Y + + AR D VS ++ISGY + G +ALE
Sbjct: 256 ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALE 315
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
FG++ +G DEVT++ VLAA + AL G + N+ + TA+I MYA
Sbjct: 316 LFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYA 375
Query: 152 K 152
Sbjct: 376 N 376
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY + G +ALE FG++ +G DEVT++ VL A + A L +Q +
Sbjct: 300 LISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRG 359
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + ++ YA+ G + A ++ +C M++G+ GR EA+ F
Sbjct: 360 YVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFY 419
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ GV DE VL+A S G +D GK + T
Sbjct: 420 EMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMT 457
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 69/185 (37%), Gaps = 37/185 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI GY+ + AL + K+ G D T VL A +L +E+ +
Sbjct: 95 MIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGD----LLLREMGRKVHALV 150
Query: 56 ----LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEAL 102
L+ Y +S S Y G + L RD S M+SG+ + G A
Sbjct: 151 VVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAF 210
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---------------SNIFLTTAII 147
E FG + G D T++ +L+A L GK N FL +II
Sbjct: 211 EVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSII 270
Query: 148 EMYAK 152
+MY
Sbjct: 271 DMYCN 275
>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
Length = 815
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 32/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
MI YS++ RF +A + F ++ G D VT + +LT G +AKEL
Sbjct: 111 MIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLT---GCNDLEVAKELYQAHAQIV 167
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
++ L+ ++ Y +G + AR D VS MI+GY+ G EA+E
Sbjct: 168 KLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIE 227
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++++LG + T V++AS G FG+ N+F+ A ++ Y+
Sbjct: 228 LFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYS 287
Query: 152 K 152
K
Sbjct: 288 K 288
Score = 35.8 bits (81), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 21/125 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y+Q G L+ F ++ G D V+ + +LTA S ++ + L+ D+S
Sbjct: 514 LLSAYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACS--HCRLVEEGLKYFNDMSG 571
Query: 61 -YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119
Y+L+ K Y AM+ ++GRF+EA + G++ DE+
Sbjct: 572 VYNLAPKREHYT---------------AMVDALCRSGRFDEAEKLMGQMP---FEPDEIV 613
Query: 120 MVVVL 124
VL
Sbjct: 614 WTSVL 618
Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 13/107 (12%)
Query: 41 SGPGAWILAKELQIEL-DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMIS 90
S G A++L ++ + +S+S+ S Y SG + +AR V+ MI
Sbjct: 54 SERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIG 113
Query: 91 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
YS++ RF +A + F ++ G D VT + +L +G L+ K
Sbjct: 114 AYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLL---TGCNDLEVAK 157
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI+GY Q RF+EA+ F +++ V D+ +V +LT + GA WI E +
Sbjct: 341 MINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENR 400
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I +D + ++ YA G I A +D S ++I G + G+ ++ALE
Sbjct: 401 IPID--AVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALEL 458
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F K++ GV D++T + VL+A S G ++ G+
Sbjct: 459 FSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRK 492
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
MISGY + RF +A+ F ++ E G+ DE T+V L+A + L K++
Sbjct: 209 MISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDN 268
Query: 54 -----------IELDLSSYSLS------------------SKTSRYAHSGRIRLAR---- 80
+++ LS + S YA+ G + AR
Sbjct: 269 VKFTPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFE 328
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D V AMI+GY Q RF+EA+ F +++ V D+ +V +L + GA++
Sbjct: 329 GSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQ 388
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GK + + TA+IEMYAK
Sbjct: 389 GKWIHEFIDENRIPIDAVVGTALIEMYAK 417
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I +++ G + L F KL G+ D T V A G A++L +
Sbjct: 108 IIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTG 167
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +Y +S YA + RD +S MISGY + RF +A+ F
Sbjct: 168 LEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFC 227
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGK-------SNIFLT----TAIIEMYAK 152
++ E G+ DE T+V L+A + L+ GK N+ T A+++MY K
Sbjct: 228 RMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNALLDMYCK 285
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G+ G F +A++ + ++E GV D T V+ A G G + K ++
Sbjct: 97 MIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSG 156
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL Y +S YA G I A RD VS +MISGY G +L F
Sbjct: 157 LDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFR 216
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ G+ D +++ +L A S G L GK ++ + T++++MYAK
Sbjct: 217 EMQASGIKLDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAK 274
>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
(PID:g473874) [Arabidopsis thaliana]
Length = 597
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y G + +A+E + ++ S+GV D VT VL A S A L K QI L +S
Sbjct: 287 MISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAA--LEKGKQIHLSISE 344
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S+ Y+ G + A +D VS MIS Y G+ EAL
Sbjct: 345 SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQ 404
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT++ VL+A G +D G
Sbjct: 405 FDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 436
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+IS + Q+G +ALE FG++ES G + V++ V ++A S G I K ++
Sbjct: 112 VISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKG 171
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+L Y S+ Y + +AR+ V+ +MI GY G +E
Sbjct: 172 FELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILN 231
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G + T+ +L A S L GK
Sbjct: 232 RMIIEGTRPSQTTLTSILMACSRSRNLLHGK 262
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 70/164 (42%), Gaps = 25/164 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY G +E ++ G + T+ +L A S + K + L +
Sbjct: 213 MIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHANLAETV 272
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S + K A S + MIS Y G + +A+E + ++ S+GV D VT
Sbjct: 273 FSKTQKD--VAESWNV-----------MISSYISVGNWFKAVEVYDQMVSVGVKPDVVTF 319
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL A S AL+ GK ++ L +A+++MY+K
Sbjct: 320 TSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 363
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS----- 138
S +IS + Q+G +ALE FG++ES G + V++ V ++A S L+ GK
Sbjct: 108 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKC 167
Query: 139 -------NIFLTTAIIEMYAK 152
+ ++ +A+++MY K
Sbjct: 168 VKKGFELDEYVNSALVDMYGK 188
>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 657
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+QAG +EA FG++ G+ D T+V +L A S G + + + + +S
Sbjct: 186 MIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSG 245
Query: 61 YSL-----SSKTSRYAHSGRIRLA------------------------------------ 79
+ ++ Y G + +A
Sbjct: 246 SRVDRILGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFE 305
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-- 133
R+ VS AMIS Y Q GR +E L+ + ++ SLG+ DE T+ VL+A G L
Sbjct: 306 QMPERNIVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLAS 365
Query: 134 ----------DFGKSNIFLTTAIIEMYAK 152
+F + L ++++MYA+
Sbjct: 366 GKMIHCYVRDNFNDPGVTLLNSLLDMYAR 394
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MIS Y Q GR +E L+ + ++ SLG+ DE T+ VL+A G K + +
Sbjct: 318 MISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHCYVRDNF 377
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D L+S YA G++ A ++ +S +I + GR E + F
Sbjct: 378 NDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQETVTFFR 437
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ S DE+T V +L+A S G L+ G+
Sbjct: 438 TMVSDAFSPDEITFVGLLSACSHGGLLEAGE 468
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ VS MI GY+QAG +EA FG++ G+ D T+V +L A S G L+ G
Sbjct: 178 RNVVSWNTMIGGYAQAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLV 237
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ + L A+++MY K
Sbjct: 238 HCHMLVSGSRVDRILGNALLDMYGK 262
>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 959
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MISGY G EAL F L G+ + +TM VL A + + L KEL +
Sbjct: 451 MISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKKG 510
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ SS T YA SGR+ LA +D V MI +SQ G+ A++ F
Sbjct: 511 LENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFR 570
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + G D V++ L+A + AL +GK S+ F+ + +I+MY+K
Sbjct: 571 QMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFISDTFVASTLIDMYSK 628
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 65/153 (42%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GY Q G +EA+ F + + GV D +T L + G+ KE+
Sbjct: 350 LIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHG 409
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ D+ Y S+ Y G + +A D C AMISGY G EAL
Sbjct: 410 VPFDV--YLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNL 467
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F L G+ + +TM VL A + +L GK
Sbjct: 468 FRWLIQEGMVPNCLTMASVLPACAALASLKLGK 500
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWI---LAKELQ 53
+I G+S G F+ AL F ++ V D+ T V+ A G P + LA+ +
Sbjct: 148 LIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMG 207
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+DL + SS Y +G I A RD + M++GY + G FN AL
Sbjct: 208 FHMDL--FIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGT 265
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
F ++ + V + V+ V +L+ + G + G +S+ + II MY+K
Sbjct: 266 FQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSK 325
>gi|297745258|emb|CBI40338.3| unnamed protein product [Vitis vinifera]
Length = 487
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 17/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
+++ Y Q G A++ F ++ E LG+ D V++V VL A + GAW K+ L+
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + ++ YA G + A +D VS AM++GYSQ GRF++AL F
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320
Query: 106 GKL--ESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ E + ++ + VT+V +L+ + G L GK
Sbjct: 321 EKIREEKIELNPNVVTLVSLLSGCALAGTLLHGK 354
>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 616
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+ G + EA F K+ G+ D T V +L+ S L + + ++++
Sbjct: 160 MIGGYAHMGNWKEAFLLFRKMREWGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITG 219
Query: 61 Y------------------------------------SLSSKTSRYAHSGRIRLAR---- 80
S +S S YA G I +AR
Sbjct: 220 VKIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFD 279
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ VS +MIS Y + G++ EAL+ F K+ + V DE T+V +LAA S G L
Sbjct: 280 QMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVM 339
Query: 136 GK-------SN-----IFLTTAIIEMYAK 152
GK SN + L ++I+MYAK
Sbjct: 340 GKKIHNYILSNKGAYGVTLYNSLIDMYAK 368
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y + G++ EAL+ F K+ + V DE T+V +L A S G ++ K++ +
Sbjct: 292 MISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIH------N 345
Query: 61 YSLSSK-----------TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNE 100
Y LS+K YA G + A D VS +I + G E
Sbjct: 346 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 405
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
A++ F ++++ G DE+T+ +L+A S G +D G
Sbjct: 406 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 441
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I+GY+Q R +EA+E F K++ V DE+ M+ VL+A + GA L + + ++
Sbjct: 225 LIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHG 284
Query: 58 ----LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+S Y ++ YA SG IR A + ++ +I+ + G EA++
Sbjct: 285 LCRIVSLY--NALIDMYAKSGNIRRALEVFENMKQKSVITWSTVIAALALHGLGGEAIDM 342
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++E V +EVT V +L+A S G +D G+
Sbjct: 343 FLRMEKAKVRPNEVTFVAILSACSHVGMVDVGR 375
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S +I+GY+Q R +EA+E F K++ V DE+ M+ VL+A + GAL+ G+
Sbjct: 217 RNVISWTTLIAGYAQTNRPHEAIELFRKMQLEEVEPDEIAMLAVLSACADLGALELGEWI 276
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 277 HNYIEKHGLCRIVSLYNALIDMYAK 301
>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
Length = 852
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G EA++ F L G+ + V + VL A + A L +EL +
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479
Query: 56 LDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GR+ L A+D V+ +MIS ++Q G EAL F
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV VT+ VL+A + A+ +GK +++F +A+I+MY K
Sbjct: 540 EMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISG Q G ++AL F ++ G+ D VT+V +L A + + KEL
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ +D+ + +S+ Y +R+A+ D V MISGY G EA++
Sbjct: 379 VHMDV--FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F L G+ + V + VL A + A+ G+ ++ +A+++MYAK
Sbjct: 437 FRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK 496
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M+ GY +AG + A+E FG + + G + T+ L+ S+ +L ++
Sbjct: 218 MMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYG 277
Query: 58 LSSYSLSSKT--SRYAHSGRIR--------LARDP-VSCKAMISGYSQAGRFNEALEPFG 106
L S + T S YA + + RD V+ MISG Q G ++AL F
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ D VT+V +L A + + GK ++FL +A++++Y K
Sbjct: 338 DMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFK 395
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQ----- 53
+I G + AG + AL + K+ D T V+ + + GA L + +
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTART 174
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ LD + S+ YA+ G + AR D V M+ GY +AG + A+E
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
FG + + G + T+ L+ S+ L FG +S + + ++ MYAK
Sbjct: 235 FGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAK 294
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-------LAKELQ 53
+ISGY+ G +NEALE + + +LGV D TM VL A G G+ L +++
Sbjct: 246 LISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG 305
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I+ D+ S+ K + RI + RD VS MI GYSQ G + E+++ F
Sbjct: 306 IKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFM 365
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D +T+ +L A G L+FGK + + +I MYAK
Sbjct: 366 EMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAK 422
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 28/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYSQ G + E+++ F ++ + D +T+ +L A G K + + S
Sbjct: 347 MICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 405
Query: 61 YSLSSKTSR-----YAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + S YA G + +D VS +MI+ Y Q G F+EA++ F
Sbjct: 406 YECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF- 464
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ V D VT V++L+ S+ G L GK SNI ++ +++MYAK
Sbjct: 465 KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAK 522
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I + G F+EAL + + + + + D T V+ A +G + +AK + +
Sbjct: 145 IIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMG 204
Query: 61 Y--------SLSSKTSRYAHSGRIRLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +L R+ + R RD VS ++ISGY+ G +NEALE +
Sbjct: 205 FGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYY 264
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ +LGV D TM VL A G G+++ G K ++ + ++ MY K
Sbjct: 265 RFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCK 322
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MI+ Y Q G F+EA++ F K+ V D VT V++L+ S+ G L KEL +L
Sbjct: 447 MINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMG 505
Query: 58 LSSYSLSSKT--SRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+S + S T YA G + ARD ++ +I+ + N L
Sbjct: 506 FNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMIS 565
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + GV D TM+ +L S A GK S++ + +IEMY+K
Sbjct: 566 RMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSK 623
>gi|255583218|ref|XP_002532374.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
gi|223527930|gb|EEF30017.1| basic helix-loop-helix-containing protein, putative [Ricinus
communis]
Length = 310
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M++ Y+Q +F EAL F ++ G+ DEVTM V++A + GA L KE+ + +
Sbjct: 144 MVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEIHLYVMQNG 203
Query: 57 -DLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
DL Y SS YA G + +L + C ++I G + G EALE F
Sbjct: 204 FDLDVYIGSSLIDMYAKCGSLDRSLLVFFKLQEKNLFCWNSVIEGLAAHGYAKEALEMFR 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ + + VT + VL A + G ++ G
Sbjct: 264 KMGREKIKPNGVTFISVLNACAHAGLVEEG 293
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S M++ Y+Q +F EAL F ++ G+ DEVTM V++A + GALD GK
Sbjct: 136 RDIISWTTMVNCYAQNKKFGEALVVFNQMIKTGICPDEVTMATVISACAHLGALDLGKEI 195
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +++I+MYAK
Sbjct: 196 HLYVMQNGFDLDVYIGSSLIDMYAK 220
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
MI GY + + EAL F ++++ + DE TMV VLTA + GA L + ++ +D +
Sbjct: 234 MIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNK 293
Query: 60 ----SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ Y G + +A RD + AM+ G + G EAL F
Sbjct: 294 VKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFS 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V DEVT V VL+A + G +D GK
Sbjct: 354 QMLKASVTPDEVTYVGVLSACTHTGMVDEGK 384
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS AMI GY + + EAL F ++++ + DE TMV VL A + GAL+ G
Sbjct: 226 RDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWI 285
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K++ F+ A+I+MY K
Sbjct: 286 RTYIDKNKVKNDTFVGNALIDMYFK 310
>gi|15223809|ref|NP_177827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098688|sp|O49287.1|PP127_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial; Flags: Precursor
gi|2829915|gb|AAC00623.1| Hypothetical protein [Arabidopsis thaliana]
gi|332197804|gb|AEE35925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 695
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M +G+SQ G E LE F ++ L + TDEV++ V++A + G + A+ +
Sbjct: 421 MTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVG 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD SS Y G + R D V +MISGY+ G+ EA++ F
Sbjct: 481 LDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFK 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ G+ ++T +VVL A + G ++ G+
Sbjct: 541 KMSVAGIRPTQITFMVVLTACNYCGLVEEGR 571
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 59/208 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY G EAL F + L D +T+ VL A + A K++ ++ +
Sbjct: 161 LLHGYILNGYAEEALRLF---KELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGG 217
Query: 61 YSLSSKTSR-----YAHSGRIRLA-------RDPV--SCKAMISGYSQAGRFNEALEPFG 106
SK + YA G +R+A R+P S A+ISGY+ GR NE+ F
Sbjct: 218 VECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFD 277
Query: 107 ----------------------KLESLGVHT--------DEVTMVVVLAASSGPGALDFG 136
K+E+L + D T+ V+ A G G L+ G
Sbjct: 278 RKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETG 337
Query: 137 K------------SNIFLTTAIIEMYAK 152
K +I + + +++MY+K
Sbjct: 338 KQMHCHACKFGLIDDIVVASTLLDMYSK 365
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 26/153 (16%)
Query: 24 LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYS---LSSKTSRYAHSGRIRLAR 80
G+ D V +L S G+ + A +L E++ SY L+S Y GRI A+
Sbjct: 347 FGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE--SYDTILLNSMIKVYFSCGRIDDAK 404
Query: 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+S +M +G+SQ G E LE F ++ L + TDEV++ V++A +
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASIS 464
Query: 132 ALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ S+ +++++I++Y K
Sbjct: 465 SLELGEQVFARATIVGLDSDQVVSSSLIDLYCK 497
>gi|449461643|ref|XP_004148551.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36730-like [Cucumis sativus]
Length = 516
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I GYS + EA+ FG++ GV + +T +L A + G A ++
Sbjct: 102 IIRGYSSSDSPQEAISLFGEMRRRGVRPNNLTFPFLLKACATLATLQEGKQFHAIAIKCG 161
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LDL Y ++ Y R+ AR VS A+I+ + F+EA++ F
Sbjct: 162 LDLDVYVRNTLIYFYGSCKRMSGARKVFDEMTERTLVSWNAVITACVENFCFDEAIDYFL 221
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ + G DE TMVV+L+A + G L G+ N+ L TA ++MYAK
Sbjct: 222 KMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTAFVDMYAK 279
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 14/138 (10%)
Query: 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSS 65
F+EA++ F K+ + G DE TMVV+L+A + G W+ ++ + + L+ ++
Sbjct: 213 FDEAIDYFLKMGNHGFEPDETTMVVILSACAELGNLSLGRWVHSQVVGRGMVLNVQLGTA 272
Query: 66 KTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA SG + AR +C AMI G +Q G NEA+E F + S + +
Sbjct: 273 FVDMYAKSGDVGCARHVFNCLKQKSVWTWSAMILGLAQHGFANEAIELFTNMMSSPIVPN 332
Query: 117 EVTMVVVLAASSGPGALD 134
VT + VL A S G +D
Sbjct: 333 HVTFIGVLCACSHAGLVD 350
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+G+ + G F EALE F K++ V D VT+V VL+A + G G W+ L+
Sbjct: 116 LINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKG 175
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y+ G I LAR VS ++I G + G EALE F
Sbjct: 176 LRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFD 235
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G ++V+ L A S G +D G
Sbjct: 236 LMQKQGFKPNDVSFTGALTACSHTGLVDEG 265
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 24/123 (19%)
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
EL+++ +S+S ++ + +G+IR A R +S +I+G+ + G F EA
Sbjct: 73 ELKVK---NSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEA 129
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
LE F K++ V D VT+V VL+A + GAL G + N+ + ++I++
Sbjct: 130 LEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDL 189
Query: 150 YAK 152
Y++
Sbjct: 190 YSR 192
>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 783
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISGY ++G EA F +++S G+ +E T+ VL + G I ++
Sbjct: 96 LISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTG 155
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
DL ++ + YA RI A ++ V+ +M++GYSQ G +A+E F
Sbjct: 156 FDLDVNVVNGLLAMYAQCKRISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECF 215
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
L G +++ T VL A + A G K+NI++ +A+I+MYAK
Sbjct: 216 RDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSGFKTNIYVQSALIDMYAK 274
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL----AKELQIEL 56
MI G + G EAL FG++ + D+ T+ +L + + A L ++
Sbjct: 299 MIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKT 358
Query: 57 DLSSYSLSSK--TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
++Y L + YA G + A +D +S A+++G + G ++EAL+ F
Sbjct: 359 GYATYKLVNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYDEALKLF 418
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ D++ VL+AS+ L+FG+ S++ + +++ MY K
Sbjct: 419 CNMRVGGITPDKIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTK 477
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GYSQ G +A+E F L G +++ T VLTA + A + ++ + S
Sbjct: 198 MLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVLTACASVSACRVGVQVHCCIVKSG 257
Query: 61 -----YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ YA + AR D VS +MI G + G EAL FG
Sbjct: 258 FKTNIYVQSALIDMYAKCREMESARALLEGMEVDDVVSWNSMIVGCVRQGLIGEALSMFG 317
Query: 107 KLESLGVHTDEVTMVVVL------------AASSGPGALDFGKSNI-FLTTAIIEMYAK 152
++ + D+ T+ +L A+S+ + G + + A+++MYAK
Sbjct: 318 RMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHCLIVKTGYATYKLVNNALVDMYAK 376
Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ S++GR +EA + F K+ DE T ++ A
Sbjct: 34 LLGDLSKSGRVDEARQMFDKMP----ERDEFTWNTMIVA--------------------- 68
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YS S + S R ++ +S A+ISGY ++G EA F +++S G+ +E T+
Sbjct: 69 YSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTL 128
Query: 121 VVVL 124
VL
Sbjct: 129 GSVL 132
>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 740
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MI+G+ Q G ++ALE F K+ES V VTMV VL+A + ++I
Sbjct: 205 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENR 264
Query: 52 LQIELDLSSYSLSSKTSR---------------------------YAHSGRIRLAR---- 80
+ + L L++ L T YA S AR
Sbjct: 265 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 324
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
D V+ A+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GAL+
Sbjct: 325 AMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALE 384
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G K N ++T+A+I MY+K
Sbjct: 385 LGRWIHSYIKKNGIKMNFYVTSALIHMYSK 414
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GA WI + +
Sbjct: 337 LISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKN 396
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ Y S+ Y+ G + A RD AMI G + G +EA++ F
Sbjct: 397 GIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMF 456
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ V + VT V A S G +D +S
Sbjct: 457 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 489
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D VS +MI+G+ Q G ++ALE F K+ES V VTMV VL+A + L+FG+
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ L A+++MY K
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTK 281
>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
[Vitis vinifera]
Length = 799
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MISGY G F EALE F K+ LG+ DE T VL+A + G A+IL E
Sbjct: 262 MISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTE 321
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ LD S ++ + Y G++ AR D VS A++SGY AGR +EA
Sbjct: 322 PRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAK 381
Query: 103 EPFGKL 108
F ++
Sbjct: 382 SFFEEM 387
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 62 SLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S ++ + Y +G + AR V+ AMISGY G F EALE F K+ LG
Sbjct: 227 SWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG 286
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS 138
+ DE T VL+A + G GK
Sbjct: 287 IQWDEFTYTSVLSACANAGFFLHGKQ 312
Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISG +Q G E+L+ F +++S G + + A + A + ++L +L
Sbjct: 398 MISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLG 457
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D S + ++ + YA G + A D VS AMI+ Q G +ALE F
Sbjct: 458 FDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFE 517
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + D +T + VL+ S G ++ G
Sbjct: 518 LMLKEDILPDRITFLTVLSTCSHAGLVEEG 547
>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Brachypodium distachyon]
Length = 599
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +AGRF +ALE F ++ +LG+ + + A +G G +E+ ++ S
Sbjct: 198 MISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREVHRWVEQSG 257
Query: 61 YSLSSK-----TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ K Y G + A + S MI G + GR +A+E F
Sbjct: 258 ITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGLAVHGRCKDAIELFH 317
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
++E V D+VT+V VL A + G + G N F I++ Y
Sbjct: 318 EMEREDVAPDDVTLVNVLTACAHTGMVSDGH-NYF--NYIVQRY 358
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ +S AMISGY +AGRF +ALE F ++ +LG+ + + A +G G L G+
Sbjct: 190 RNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVLARGREV 249
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 250 HRWVEQSGITMDEKLATAVVDMYCK 274
>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
Length = 611
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 33/185 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY + EALE F ++ GV +EVTMV L A + G W+ + +
Sbjct: 179 LINGYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAG 238
Query: 56 LDLSSYSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
D ++ +S YA G + +AR + V+ MI+ Y+Q R+N
Sbjct: 239 YDPFVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYN 298
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSN----IFLTTAII 147
EAL F + + G D+ T + VL+ + L G KSN I L TA++
Sbjct: 299 EALGLFFYMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMAKDIALATALL 358
Query: 148 EMYAK 152
+MYAK
Sbjct: 359 DMYAK 363
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 33/185 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI GY+++ +L + ++ G D T VL A S G + + L+
Sbjct: 78 MIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVSGKCVHSCILKSG 137
Query: 56 LDLSSYSLSSKTSRYAH-----SGRIRLARDP----VSCKAMISGYSQAGRFNEALEPFG 106
+ + Y + + Y SG + P V+ +I+GY + EALE F
Sbjct: 138 FEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVINDQPREALEVFK 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------------SNIFLTTAII 147
++ GV +EVTMV L A + +D G+ SN+ L TAI+
Sbjct: 198 EMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFASNSNVILATAIV 257
Query: 148 EMYAK 152
EMYAK
Sbjct: 258 EMYAK 262
>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYSQ G EAL F +++ + + L+ S A L ++L L +
Sbjct: 151 MIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAG 210
Query: 61 YSL-----SSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
Y ++ + Y G I ARD VS MI GY++ G EAL F
Sbjct: 211 YQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFE 270
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+++ G+ D+ TMV VLAA S G +D G +
Sbjct: 271 LMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFY 305
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 21/169 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLS 59
M+SGY+Q G +EA E F K+ + ++ +L A G AK L + ++D +
Sbjct: 63 MLSGYAQNGFVDEAREIFYKMPL----KNGISWNGLLAAYVQNGRIEDAKRLFESKMDWT 118
Query: 60 SYSLSSKTSRYAHSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
S + + R RD +S AMI+GYSQ G EAL F +++
Sbjct: 119 LVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERL 178
Query: 116 DEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + L+ S AL+ G+ + ++ A++ MY K
Sbjct: 179 NRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCK 227
>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Cucumis sativus]
Length = 741
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MI+GY Q+GR +EA E F ++ D V ++T + G A L E+ D
Sbjct: 332 MINGYLQSGRMDEANEIFSQISV----RDSVCWNSMITGYAHCGRTDEALRLFQEMVCKD 387
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ S++ + + YA +G++ A R+ VS ++I+GY Q G + EAL F +
Sbjct: 388 MVSWN--TMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ G D+ T+V L AS+ AL+ G +++F+ AI+ MYAK
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAK 501
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q G + EAL F ++ G D+ T+V L AS+ A + +L L + +
Sbjct: 425 LITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLH-HLTIKT 483
Query: 61 ------YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ + YA SGR+ A +D VS ++I+GY+ G EA+E F
Sbjct: 484 GFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELF 543
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ G+ DEVT +L+A + G +D G N+F
Sbjct: 544 EVMPLRGIIPDEVTFTGLLSACNHGGFVDQG-LNLF 578
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++ GR EA F ++ + + + + + + A+ L E+ + S
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP---EKDS 295
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFGKL 108
S ++ + Y G++ AR+ ++ AMI+GY Q+GR +EA E F ++
Sbjct: 296 VSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQI 352
>gi|413922815|gb|AFW62747.1| hypothetical protein ZEAMMB73_141955 [Zea mays]
Length = 301
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S ++ SRYA + ++ +AR D VS AMISGY + + NEAL F ++ G
Sbjct: 78 SSTAMVSRYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALSLFNGMQECG 137
Query: 113 VHTDEVTMVVVLAASSGPGALD-------FGKSN-----IFLTTAIIEMYAK 152
+ +DEVTM+ V++A + G+L+ F K+N + + A+I+M+AK
Sbjct: 138 IRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNGLNKVLHICNALIDMFAK 189
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 17/164 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + + NEAL F ++ G+ +DEVTM+ V++A + G+ WI A
Sbjct: 113 MISGYVDSNQPNEALSLFNGMQECGIRSDEVTMLSVISACANLGSLNKAKWIHAFIKNNG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ +A G I LA ++ ++ +MIS ++ G +L F
Sbjct: 173 LNKVLHICNALIDMFAKCGGINLALNVFNEMPLKNVITWTSMISAFAMHGDGKSSLRLFE 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
+++ G +EVT + +L A G + G+ L +++++ Y
Sbjct: 233 QMKDEGAEPNEVTFLSLLYACCHVGLVYEGR---LLFSSMVQQY 273
>gi|255556057|ref|XP_002519063.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541726|gb|EEF43274.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 386
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+ISGY Q G EA+ F K+ G D T V+VL+A + GA W+ +
Sbjct: 183 IISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWVHKYTIGHG 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LDL+ +S + Y G + AR + V+ AMISGY G +A++ F
Sbjct: 243 LDLNVVLGTSLINMYTRCGTVTKAREVFDSMKEKNVVTWTAMISGYGTNGHGRQAVQLFD 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G + VT V VL+A + G + G
Sbjct: 303 EMKRRGPCPNSVTFVAVLSACAHAGLVKEG 332
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R VS ++ISGY Q G EA+ F K+ G D T V+VL+A + GAL G
Sbjct: 175 RSVVSWNSIISGYEQNGFGREAIRLFKKMREEGFEPDSATFVIVLSACAQLGALSMGCWV 234
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T++I MY +
Sbjct: 235 HKYTIGHGLDLNVVLGTSLINMYTR 259
>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Glycine max]
Length = 882
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MISGY + G E L FG + V D +TM V+TA G L ++ L+ E
Sbjct: 279 MISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQIHGYVLRTE 338
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S Y+ G I A RD VS AMISGY +ALE +
Sbjct: 339 FGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMPQKALETYK 398
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+E+ G+ DE+T+ +VL+A S LD G S + ++I+MYAK
Sbjct: 399 MMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSLIDMYAK 456
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY++AG F+EAL+ + ++ +GV D T VL G + +E+ + +
Sbjct: 178 LVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYG 237
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +++ + Y G + A RD +S AMISGY + G E L FG
Sbjct: 238 FESDVDVVNALITMYVKCGDVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFG 297
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ V D +TM V+ A G G+
Sbjct: 298 MMIKYPVDPDLMTMTSVITACELLGDDRLGRQ 329
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA---KELQIELD 57
MISGY +ALE + +E+ G+ DE+T+ +VL+A S + E+ +
Sbjct: 380 MISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKG 439
Query: 58 LSSYSL--SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L SYS+ +S YA I L ++ VS ++I G R EAL F
Sbjct: 440 LVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFR 499
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + + VT+V VL+A + GAL GK + F+ AI++MY +
Sbjct: 500 EMIR-RLKPNSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVR 556
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 13/91 (14%)
Query: 74 GRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
GR+ R+ S ++ GY++AG F+EAL+ + ++ +GV D T VL G L
Sbjct: 165 GRME-KRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGMPNL 223
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
G+ S++ + A+I MY K
Sbjct: 224 VRGREIHVHVIRYGFESDVDVVNALITMYVK 254
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 29 DEVTMVVVLTASSGPGAWILAKE-----LQIELDLSSYSLSSKTSRYAHSGRIRLA---- 79
+ VT+V VL+A + GA KE L+ + + ++ Y GR+ A
Sbjct: 508 NSVTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQF 567
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+ S +++GY++ G+ A E F ++ V +EVT + +L A S G
Sbjct: 568 FSVDHEVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSG 623
>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 843
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G EA++ F L G+ + V + VL A + A L +EL +
Sbjct: 420 MISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNA 479
Query: 56 LDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GR+ L A+D V+ +MIS ++Q G EAL F
Sbjct: 480 YEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFR 539
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV VT+ VL+A + A+ +GK +++F +A+I+MY K
Sbjct: 540 EMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGK 597
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISG Q G ++AL F ++ G+ D VT+V +L A + + KEL
Sbjct: 319 MISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNC 378
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ +D+ + +S+ Y +R+A+ D V MISGY G EA++
Sbjct: 379 VHMDV--FLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F L G+ + V + VL A + A+ G+ ++ +A+++MYAK
Sbjct: 437 FRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAK 496
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M+ GY +AG + A+E FG + + G + T+ L+ S+ +L ++
Sbjct: 218 MMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYG 277
Query: 58 LSSYSLSSKT--SRYAHSGRIR--------LARDP-VSCKAMISGYSQAGRFNEALEPFG 106
L S + T S YA + + RD V+ MISG Q G ++AL F
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ D VT+V +L A + + GK ++FL +A++++Y K
Sbjct: 338 DMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFK 395
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 34/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-----DEVTMVVVLTASSGPGAWILAKELQ-- 53
+I G + AG + AL + K+ + H D T V+ + + GA L + +
Sbjct: 115 LIRGLTMAGDYRSALLFYLKMWA---HPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRT 171
Query: 54 ---IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
+ LD + S+ YA+ G + AR D V M+ GY +AG + A
Sbjct: 172 ARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSA 231
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
+E FG + + G + T+ L+ S+ L FG +S + + ++ M
Sbjct: 232 VELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSM 291
Query: 150 YAK 152
YAK
Sbjct: 292 YAK 294
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+GY Q F E L F ++ G + VT+V VL A +G G I +++
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D ++ + Y G + AR + VS AMI+ Y Q A++ F
Sbjct: 260 VDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFR 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ V D +TMV V++A + GAL+ G+ N+ +T A+I+MYAK
Sbjct: 320 RMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAK 377
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I GY+ AG EAL + + G+ D T V+ + + A KE+ +
Sbjct: 99 LIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHG 158
Query: 57 -DLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
D + SS + Y+ SG + R+ VS A+I+GY Q F E L F
Sbjct: 159 FDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFR 218
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G + VT+V VL A +G L+ GK ++ LT A+I +Y K
Sbjct: 219 EMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGK 276
>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 900
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA---SSGP--GAWILAKELQIE 55
MI G +Q G +A+ F +++ V D T+V ++ A S P WI +++
Sbjct: 500 MILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLH 559
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD Y L++ YA GR+ +AR ++ AMI GY G A+E F
Sbjct: 560 LDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFE 619
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++S G +E T + VL+A S G +D G+
Sbjct: 620 EMKSSGKVPNETTFLSVLSACSHAGLVDEGQ 650
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI----- 54
+++GY++ G A+ ++ E G D VT+V VL A + A +E+
Sbjct: 297 LVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRG 356
Query: 55 ----ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
++++S+ L Y G + AR + VS AMI GY++ G EA
Sbjct: 357 GFDEQVNVSTAILDV----YCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEA 412
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
L F ++ GV +V+++ L A G LD G+ SN+ + A+I M
Sbjct: 413 LALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITM 472
Query: 150 YAK 152
Y K
Sbjct: 473 YCK 475
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---ELQIELD 57
MI GY++ G EAL F ++ GV +V+++ L A G + EL + +
Sbjct: 399 MIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIG 458
Query: 58 LSSYS--LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S +++ + Y R LA + VS AMI G +Q G +A+ F
Sbjct: 459 LESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFS 518
Query: 107 KLESLGVHTDEVTMVVV---LAASSGPGALDF--GKS-------NIFLTTAIIEMYAK 152
+++ V D T+V + LA S P + G S ++++ TA+I+MYAK
Sbjct: 519 RMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAK 576
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q+G F EA+E F +++ V + VT+V VL A S GA W+ ++
Sbjct: 230 MIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNN 289
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ YA G I A R+ V+ +I+G + GR + L+ F
Sbjct: 290 IGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFE 349
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E GV +VT + +L+A S G ++ G+
Sbjct: 350 DMERAGVMPSDVTYIGLLSACSHAGLVNEGR 380
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MI+GY+Q+G F EA+E F +++ V + VT+V VL A S GAL+ GK
Sbjct: 222 RSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWV 281
Query: 138 ------SNI----FLTTAIIEMYAK 152
+NI L +A+I+MYAK
Sbjct: 282 HLYAVRNNIGVDDVLGSALIDMYAK 306
>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g02750-like [Cucumis sativus]
Length = 741
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MI+GY Q+GR +EA E F ++ D V ++T + G A L E+ D
Sbjct: 332 MINGYLQSGRMDEANEIFSQISV----RDSVCWNSMITGYAHCGRTDEALRLFQEMVCKD 387
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ S++ + + YA +G++ A R+ VS ++I+GY Q G + EAL F +
Sbjct: 388 MVSWN--TMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILM 445
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ G D+ T+V L AS+ AL+ G +++F+ AI+ MYAK
Sbjct: 446 KQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILTMYAK 501
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 17/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY Q G + EAL F ++ G D+ T+V L AS+ A + +L L + +
Sbjct: 425 LITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLH-HLTIKT 483
Query: 61 ------YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ + YA SGR+ A +D VS ++I+GY+ G EA+E F
Sbjct: 484 GFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELF 543
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ G+ DEVT +L+A + G +D G N+F
Sbjct: 544 EVMPLRGIIPDEVTFTGLLSACNHGGFVDQG-LNLF 578
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 12/117 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++ GR EA F ++ + + + + + + A+ L E+ + S
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMP---EKDS 295
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFGKL 108
S ++ + Y G++ AR+ ++ AMI+GY Q+GR +EA E F ++
Sbjct: 296 VSWTAMINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQI 352
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+++GY Q + EA+ F +++ V +E+TMV +L+A S GA W+ + +
Sbjct: 327 LMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQ 386
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L LS +S YA G I+ A ++ ++ AMI G + G +EA+E F
Sbjct: 387 LYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQ 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ LG+ DE+T + VL+A G + G+ L + KM
Sbjct: 447 RMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKM 493
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKELQIELD- 57
+I GY ++G EALE F +L G V DEVTM+ ++ + G L K L +D
Sbjct: 193 LIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDS 252
Query: 58 ----LSSYSLSSKTSRYAHSGRIRLA---------------------------------- 79
+ +++ Y G + LA
Sbjct: 253 KGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARML 312
Query: 80 ------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
RD A+++GY Q + EA+ F +++ V +E+TMV +L+A S GAL
Sbjct: 313 FDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGAL 372
Query: 134 DFG--------KSNIFLT----TAIIEMYAK 152
+ G + ++L+ T++++MYAK
Sbjct: 373 EMGMWVHHYIDRHQLYLSVALGTSLVDMYAK 403
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 14/88 (15%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFG 136
ARD VS +I GY ++G EALE F +L G V DEVTM+ ++ + G L+ G
Sbjct: 184 ARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELG 243
Query: 137 K------------SNIFLTTAIIEMYAK 152
K + L A+++MY K
Sbjct: 244 KRLHEFVDSKGVRCTVRLMNAVMDMYVK 271
>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY Q G F EAL+ F L + V + T + A S GA A ++
Sbjct: 284 LITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSS 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + S+ + Y+ GR+ A D V+ A+I+GY+ G EAL+ F
Sbjct: 344 LVAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFR 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ GV + VT + VL A S G + G+
Sbjct: 404 RMQDCGVRPNAVTFIAVLTACSHSGLVIEGR 434
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++ GY+QA R +AL F K+ + GV DE +VL A +G +++ ++L
Sbjct: 183 IMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLG 242
Query: 58 LSS-----------YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L S Y S + + VS A+I+GY Q G F EAL+ F
Sbjct: 243 LESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFE 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L + V + T + A S + G
Sbjct: 303 SLRTRSVDINSFTYTSIFQACSALADFNSG 332
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 16/103 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+ G EAL+ F +++ GV + VT + VLTA S G I ++
Sbjct: 385 IIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTACSHSGLVIEGRQY-------- 436
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
L S +S Y + I D C M+ YS+AG EALE
Sbjct: 437 --LESMSSNYGVATTI----DHYDC--MVDIYSRAGFLQEALE 471
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+IS Y++ G F++ F + L + T + L + P + K++ I
Sbjct: 82 IISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSG 141
Query: 58 L-SSYSLSSKTSR-YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S+ S+++ S Y G + A ++ V+ ++ GY+QA R +AL F
Sbjct: 142 LGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFA 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ + GV DE +VL A +G L+FG+ S + + T +++ Y K
Sbjct: 202 KMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVK 259
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY Q R EAL F ++ V D++TMV +L+A S GA + + +D
Sbjct: 325 LMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRR 384
Query: 61 YSLS-----SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SLS + Y+ G I A ++ ++ AMISG + G + A++ F
Sbjct: 385 VSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQ 444
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ LG+ DE+T + VL+A G + G+ L + + KM
Sbjct: 445 RMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKM 491
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASS----------------GP 43
+I GY + G EALE F ++ G V DEVTM+ V++ S+
Sbjct: 192 LIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESH 251
Query: 44 GAWILAKELQIELDL--------------------SSYSLSSKTSRYAHSGRIRLAR--- 80
G + + + +D+ + S ++ YA G + AR
Sbjct: 252 GVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVF 311
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D A+++GY Q R EAL F ++ V D++TMV +L+A S GAL+
Sbjct: 312 DEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALE 371
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G ++ L T +++MY+K
Sbjct: 372 MGMWVHHYIDRRRVSLSVMLGTNLVDMYSK 401
Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFG-- 136
RD VS +I GY + G EALE F ++ G V DEVTM+ V++ S+ L+ G
Sbjct: 184 RDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRR 243
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ + L +++MY K
Sbjct: 244 LHGYVESHGVRCTVRLMNVVMDMYIK 269
>gi|302754104|ref|XP_002960476.1| hypothetical protein SELMODRAFT_70138 [Selaginella moellendorffii]
gi|300171415|gb|EFJ38015.1| hypothetical protein SELMODRAFT_70138 [Selaginella moellendorffii]
Length = 672
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKELQIEL 56
MIS Y Q+G EALE F K+E GV D VT+V +L S A ++ +L+ +
Sbjct: 258 MISAYVQSGHHREALELFEKMELEGVAPDVVTIVEILGVCSVLRKLDKARMIHAQLRARV 317
Query: 57 DLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPF 105
D + + S + Y + A RD V+ MI+ Y++ G AL+ F
Sbjct: 318 DADTAVVDSLLNVYRECRSLEDAVTVFREEAGGARDCVAWNTMIAAYAECGDPGMALKLF 377
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ GV EVT V VL A+S GAL G S
Sbjct: 378 TLMDLHGVEPTEVTYVAVLGAASSLGALTRGAS 410
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 63/150 (42%), Gaps = 19/150 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL--TASSGPGAWILAKELQIELDL 58
+I+ YSQ EAL + + GV D+V M+ L AS G I A D
Sbjct: 158 LIAAYSQFKMGREALGLYRAMHLEGVAPDKVAMLSALGACASEPDGRAIHACITCCGSDG 217
Query: 59 SSYSLSSKTSRYAHSGRI-------------RLARDPVSC-KAMISGYSQAGRFNEALEP 104
S+ S Y GR R+ R V +MIS Y Q+G EALE
Sbjct: 218 DDTVASALVSMY---GRFQMLESAKSVFFHRRVPRSSVELWNSMISAYVQSGHHREALEL 274
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F K+E GV D VT+V +L S LD
Sbjct: 275 FEKMELEGVAPDVVTIVEILGVCSVLRKLD 304
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 58/141 (41%), Gaps = 14/141 (9%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
++ ++Q G +A+ F + GV D V + A S G + L + SS+
Sbjct: 58 MTAFAQNGDPRQAIHLFQAMCLDGVELDRVAFATAVGACSSLGDLHTGRSLHSTIATSSF 117
Query: 62 SLS-----SKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGK 107
S + YA +G LA D V+ A+I+ YSQ EAL +
Sbjct: 118 QSDAVLRVSLINMYAKAGEFALAEDLFQRLKPKNAVAYTALIAAYSQFKMGREALGLYRA 177
Query: 108 LESLGVHTDEVTMVVVLAASS 128
+ GV D+V M+ L A +
Sbjct: 178 MHLEGVAPDKVAMLSALGACA 198
>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Brachypodium distachyon]
Length = 773
Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-------ILAKELQ 53
+IS YS GR N+AL +G++ + V + T++ V++A + A K +
Sbjct: 498 LISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMG 557
Query: 54 IELDLS-SYSLSSKTSRYAHSGRIR------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+E D+S S +L ++ G R L RD V+ MISGY G N+AL+ F
Sbjct: 558 LESDVSISTALVDMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFS 617
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E+ + + +T + +L+A G +D G+
Sbjct: 618 EMEAGSIKPNSLTFLAILSACCHAGLVDEGR 648
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG---VHTDEVTMVVVLTASSGPGAWILAKELQ---I 54
M++GY +AG + LE + +++ D ++V +++ S G L + + I
Sbjct: 394 MVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSI 453
Query: 55 ELDLSSYSLS-SKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALE 103
+ L S++ S Y G LA RD V+ A+IS YS GR N+AL
Sbjct: 454 KCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALS 513
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYA 151
+G++ + V + T++ V++A + AL+ G +S++ ++TA+++MY
Sbjct: 514 LYGQMLTEDVKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYT 573
Query: 152 K 152
K
Sbjct: 574 K 574
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D VS +I Y + G EA+E F ++E G+ DEV + VL+ ++ GK+
Sbjct: 285 KDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAF 344
Query: 139 -----------NIFLTTAIIEMYAK 152
++ + ++I MY K
Sbjct: 345 HAVIIRRNFGDSVLIANSLISMYGK 369
Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 17/155 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+I Y + G EA+E F ++E G+ DEV + VL+ A+ G A ++
Sbjct: 293 LIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGKAFHAVIIRRN 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S +S S Y + +A RD S M++GY +AG + LE +
Sbjct: 353 FGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYR 412
Query: 107 KLESLG---VHTDEVTMVVVLAASSGPGALDFGKS 138
+++ D ++V +++ S G L G+S
Sbjct: 413 QMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQS 447
>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
Length = 787
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGYS G ++E F +L + G + T+V V+ S G +LA+ L +
Sbjct: 284 LISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
LD + ++ T+ Y + AR S AMISGY+Q G A+ F
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQ 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ L V + +T+ L+A + GAL GK N+++ TA+I+MYAK
Sbjct: 404 LMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAK 461
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----W---ILAKEL 52
MISGY+Q G A+ F ++ L V + +T+ L+A + GA W I++KE
Sbjct: 385 MISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKE- 443
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+L+L+ Y +++ YA G I AR + VS AMISGY G+ EAL+
Sbjct: 444 --KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALK 501
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ + + T + V+ A S G +D G+
Sbjct: 502 LYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQ 535
>gi|302790562|ref|XP_002977048.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
gi|300155024|gb|EFJ21657.1| hypothetical protein SELMODRAFT_106624 [Selaginella moellendorffii]
Length = 883
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG--PGAWILAKELQIELDL 58
MI+ Y+Q G +A + ++E GV + T +L A S G I ++ L L
Sbjct: 218 MIAAYAQGGHSAQARQLCEEMEGFGVKASDTTFAGILGACSSLEEGKKIHSRALARGLSS 277
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
S ++ S Y + AR D VS A+I Y+Q GR EALE + ++E
Sbjct: 278 SIIVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQME 337
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
G+ D+VT VL+A S L+ G+ S+ L A+I MY K
Sbjct: 338 GEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARKDGFSDGVLVAALINMYVK 393
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y+Q GR EALE + ++E G+ D+VT VL+A S L + L L
Sbjct: 316 LIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTNDLELGQALHARLLARK 375
Query: 61 YSLSSKT------SRYAHSGRIRLARDPV-SCK---------AMISGYSQAGRFNEALEP 104
S + Y GR+ L+ + SCK AMI+ Y Q G A++
Sbjct: 376 DGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDL 435
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYA 151
+ ++ G+ DE T+ +L+A + L+ G+ N + A+I MYA
Sbjct: 436 YDMMKQRGLDPDESTLSSILSACAELKDLEKGEQVHVEIIASRDCSQNPVVLNALISMYA 495
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI+ Y Q G A++ + ++ G+ DE T+ +L+A + +++ +E+
Sbjct: 419 MITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACAELKDLEKGEQVHVEIIASR 478
Query: 57 DLSSYS--LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
D S L++ S YA G IR A RD VS +IS Y Q G AL +
Sbjct: 479 DCSQNPVVLNALISMYASCGEIREAKAVFKRMKNRDVVSWTILISAYVQGGDARRALRLY 538
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLT-----TAIIEMYAK 152
++ GV EVTM+ V+AA S +L G ++F T A+I MYA+
Sbjct: 539 RRMLVEGVQPTEVTMLAVIAACSAMESLWEGIVIHALTDSMFFTDTAVQAALISMYAR 596
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAW--ILAKELQIELD 57
+IS Y Q G AL + ++ GV EVTM+ V+ A S W I+ L +
Sbjct: 521 LISAYVQGGDARRALRLYRRMLVEGVQPTEVTMLAVIAACSAMESLWEGIVIHALTDSMF 580
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA----------RDPVSC-KAMISGYSQAGRFNEALEPF 105
+ ++ + S YA R+ LA +C AM++ YSQ G E + +
Sbjct: 581 FTDTAVQAALISMYARCRRLDLACQVFRQVRHLESSANCWNAMLAAYSQLGLPEEGIRLY 640
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ S G+ +E T LAA S GA+ G S++ L TA++ MYAK
Sbjct: 641 WEMSSTGIKANEGTFAGALAACSMLGAVREGYRIHEQVSSSRYSSDLSLKTALVHMYAK 699
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDL 58
M++ YSQ G E + + ++ S G+ +E T L A S GA + Q+
Sbjct: 623 MLAAYSQLGLPEEGIRLYWEMSSTGIKANEGTFAGALAACSMLGAVREGYRIHEQVSSSR 682
Query: 59 SSYSLSSKTS---RYAHSGRI--------RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
S LS KT+ YA R+ +L D V+ AMI+ Y+Q G ALE + K
Sbjct: 683 YSSDLSLKTALVHMYAKCNRVDAAFHVFEQLQPDVVAWNAMIAAYAQNGYAWHALELYSK 742
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G E T + V A G +D K
Sbjct: 743 MLH-GYKPLEPTFLCVFLACGHAGLVDECK 771
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY+ GR NEAL F ++ GV D TMV +L+A + GA L + +++
Sbjct: 212 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 271
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++ ++ YA G IR A + VS ++I G + G EALE F
Sbjct: 272 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 331
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+LE G+ E+T V VL A S G +D G
Sbjct: 332 ELERKGLMPSEITFVGVLYACSHCGMVDEG 361
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ V+ ++I+GY+ GR NEAL F ++ GV D TMV +L+A + GAL G+
Sbjct: 204 RNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA 263
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ A++++YAK
Sbjct: 264 HVYMVKVGLDGNLHAGNALLDLYAK 288
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG SQAG E L F K+ GV D++TMV ++++ G L ++L ++
Sbjct: 158 IISGLSQAGESKEPLALFVKMRRCGVVPDDLTMVSLVSSCCAVGDIGLVEQLHKCMLQCK 217
Query: 58 LSS---YSLSSK-TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
SS +LS+ YA GR LA RD S MI+G + G AL+
Sbjct: 218 HSSRLDVTLSNALIDMYAKCGRTDLAGRVFERMPLRDVSSWTTMITGLATHGEEQRALKK 277
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++S GV + VTM+ VL+A + G +D G
Sbjct: 278 FDEMKSEGVPPNRVTMLAVLSACAHRGLVDTG 309
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF-------- 135
S A+ISG SQAG E L F K+ GV D++TMV ++++ G +
Sbjct: 154 SWNAIISGLSQAGESKEPLALFVKMRRCGVVPDDLTMVSLVSSCCAVGDIGLVEQLHKCM 213
Query: 136 ------GKSNIFLTTAIIEMYAK 152
+ ++ L+ A+I+MYAK
Sbjct: 214 LQCKHSSRLDVTLSNALIDMYAK 236
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY+Q G + EA+E F ++ +G V + VT+V VL A S G L K + + + +
Sbjct: 236 MISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKN 295
Query: 60 SYSL-----SSKTSRYAHSGRI--------RLARDPV-SCKAMISGYSQAGRFNEALEPF 105
+ S+ YA G I RL ++ V + A+I G + G+ N+
Sbjct: 296 KIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYL 355
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++E G+ +VT + +L+A S G +D G+S
Sbjct: 356 SRMEKCGISPSDVTYIAILSACSHAGLVDEGRS 388
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 22/105 (20%)
Query: 70 YAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
YA G ++ AR+ VS MISGY+Q G + EA+E F ++ +G V + VT
Sbjct: 209 YARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVT 268
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+V VL A S G L+ GK + L +A+++MYAK
Sbjct: 269 LVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAK 313
>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g27110-like [Vitis vinifera]
Length = 694
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IE-- 55
MISGY + G + EAL F + GV D +T VL A S KE+ IE
Sbjct: 380 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 439
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+++ + + YA G + A RD VS +MI+ Y G+ EAL+ F
Sbjct: 440 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 499
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ D+VT + +L+A S G +D G
Sbjct: 500 KMQQSDAKPDKVTFLAILSACSHAGLVDEG 529
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q G+ +ALE F +++ G D VT+ V+++ + KE+ +EL S
Sbjct: 178 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 237
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L S+ Y G + +A ++ VS +MI+GYS G +E F
Sbjct: 238 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFR 297
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ T+ +L A S L GK ++IF+ +++I++Y K
Sbjct: 298 RMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 355
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GYS G +E F +++ G+ T+ +L A S G +I ++
Sbjct: 279 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR 338
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
++ + SS Y G I A + VS MISGY + G + EAL F
Sbjct: 339 VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFT 398
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ GV D +T VL A S L+ GK N + A+++MYAK
Sbjct: 399 DMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAK 456
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 11 FNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSL-----S 64
F E LE F +L + D T VL A SG G K + + S +++ S
Sbjct: 86 FIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMS 145
Query: 65 SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
S YA A RD S +IS Y Q G+ +ALE F +++ G
Sbjct: 146 SAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKP 205
Query: 116 DEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
D VT+ V+++ + L+ GK + F+++A+++MY K
Sbjct: 206 DSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK 254
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGA-----WILAKELQI 54
MI GY Q + +EAL+ F +L+S V +EVT+V +L A + GA W+ +
Sbjct: 267 MIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRK 326
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+LD + +S Y G I AR + + A+I+G++ G +EALE F
Sbjct: 327 KLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWNALINGFAMNGLASEALEAF 386
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ +++TM VL+A S G ++ GK
Sbjct: 387 SEMQQEGIKPNDITMTGVLSACSHGGLVEEGK 418
Score = 42.0 bits (97), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLAASSGPGALDFGK- 137
++ VS AMI GY Q + +EAL+ F +L+S V +EVT+V +L A + GAL+ G+
Sbjct: 259 KNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEW 318
Query: 138 -----------SNIFLTTAIIEMYAK 152
+ + + T++++MY K
Sbjct: 319 VHRFVQRKKLDAAVNVCTSLVDMYLK 344
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G +A+ + ++E G+ D+ T++ +L+A + G L K + ++ +
Sbjct: 282 MISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTR 341
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ S YA G + A +D VS A+I G + G +AL+ F
Sbjct: 342 FKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFS 401
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G D+VT V VL A + G +D G
Sbjct: 402 RMKGEGFVPDKVTFVGVLCACTHAGFVDEG 431
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + G EA F ++ D V+ +L G A EL ++ +
Sbjct: 189 MIGGLVKVGELGEARRLFDEMPE----RDTVSWNTILDGYVKAGEMNAAFELFEKMPARN 244
Query: 61 Y-SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S S+ Y+ +G + +AR + V MISGY++ G +A+ + ++E
Sbjct: 245 VVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEE 304
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
G+ D+ T++ +L+A + G L G K + ++ A+I+MYAK
Sbjct: 305 AGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAK 358
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q+G F EA+E F +++ V + VT+V VL A S GA W+ ++
Sbjct: 207 MIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNN 266
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ YA G I A R+ V+ +I+G + GR + L+ F
Sbjct: 267 IGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFE 326
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E GV +VT + +L+A S G ++ G+
Sbjct: 327 DMERAGVMPSDVTYIGLLSACSHAGLVNEGR 357
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS MI+GY+Q+G F EA+E F +++ V + VT+V VL A S GAL+ GK
Sbjct: 199 RSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWV 258
Query: 138 ------SNI----FLTTAIIEMYAK 152
+NI L +A+I+MYAK
Sbjct: 259 HLYAVRNNIGVDDVLGSALIDMYAK 283
>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Cucumis sativus]
Length = 990
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G++Q G +AL+ + ++ LG+ D+ ++V +L A G KE L+
Sbjct: 488 VIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNG 547
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+++S+ S S Y H + R + V AM+SGYSQ NEAL F
Sbjct: 548 LEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFR 607
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ DE+ + +L A S AL GK + F+ ++++MYAK
Sbjct: 608 QMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAK 665
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M+SGYSQ NEAL F ++ S G+ DE+ + +L A S A L KE+
Sbjct: 589 MLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNS 648
Query: 54 -IELDLSSYSL---SSKTSRYAHSGRI--RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+E + + SL +K+ HS RI RL ++ S MI+G+ G+ N+A+E F
Sbjct: 649 LMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFE 708
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ D T + VL A G + G
Sbjct: 709 DMKRSDKQPDRFTFLGVLQACCHAGLVSEG 738
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL-----QI 54
++SGY + ++EA+ F +L S+ D T ++ A +G L K + ++
Sbjct: 180 LVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKM 239
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + + ++ + Y G + A ++ +S ++I G+S+ G + EA F
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299
Query: 106 GKL--ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
L G+ D TMV +L SG G +D G + + A+I+MY+
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYS 359
Query: 152 K 152
K
Sbjct: 360 K 360
>gi|255540005|ref|XP_002511067.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550182|gb|EEF51669.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 318
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY Q R +AL+ FG+L + V DEVT+V LTA G L K++ + ++
Sbjct: 15 MISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLGKKIHALIVVN 74
Query: 60 SYSL-----SSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPF 105
+ L S YA ++ AR+ V ++I GY++ + E LE F
Sbjct: 75 GFVLDVILGSCLIDMYAKCAQMDNAREVFDKIPVRNLVCWTSLIVGYARLNMYKEGLELF 134
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+ GV D + V++A GAL G+ N+ + A+I+MY+K
Sbjct: 135 RELQIAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNGIDMNLSVRNALIDMYSK 193
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+I GY++ + E LE F +L+ GV D + V++A GA W+ +
Sbjct: 117 LIVGYARLNMYKEGLELFRELQIAGVIADAALVACVVSACGHMGALAQGRWVHTYCERNG 176
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+D++ ++ Y+ G I A +D S AMISG++ G +EALE F
Sbjct: 177 IDMNLSVRNALIDMYSKCGDIEKAHQIFNGMVKKDLFSWTAMISGFAMNGYSDEALELFA 236
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
++E+ V +EVT + VL+A S G +D G
Sbjct: 237 QVETCNDVKPNEVTFLGVLSACSHGGFVDKG 267
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 13/88 (14%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
L RD VS +MISGY Q R +AL+ FG+L + V DEVT+V L A G ++ G
Sbjct: 5 LIRDVVSWNSMISGYLQCERNGDALKVFGELLNDNFVRFDEVTLVNALTACGRTGFVNLG 64
Query: 137 KS------------NIFLTTAIIEMYAK 152
K ++ L + +I+MYAK
Sbjct: 65 KKIHALIVVNGFVLDVILGSCLIDMYAK 92
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q G F EALE F ++ G + +V LTA + GA WI A +
Sbjct: 216 MITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNR 275
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L ++ YA G + L RD + ++ISG + G A+E F
Sbjct: 276 MVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFT 335
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMY 150
++++ GV +EVT + +L+A S G ++ G +NI+ +++ Y
Sbjct: 336 RMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 385
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA SG++ +AR + VS AMI+GY+Q G F EALE F ++ G + +
Sbjct: 189 YAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAI 248
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V L A + GALD G+ + L TA+I+MYAK
Sbjct: 249 VGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAK 292
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 62.4 bits (150), Expect = 6e-08, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+ Y G+ +AL+ F + S G+ D++T+ +L A S G I +
Sbjct: 203 MIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFG 262
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LDL + ++ Y I AR D V+ MI GY++ G NE+L F
Sbjct: 263 LDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFD 322
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ GV D+V MV V+ A + GA+ ++ ++ L TA+I+M+AK
Sbjct: 323 KMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 380
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 49/178 (27%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ G+++ G + F +L G D T+ V+ A G I +
Sbjct: 1 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LDL + ++ Y I AR D V+ MI GY++ G+ NE+L F
Sbjct: 61 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ GV D+V MV V+ A + GA+ + ++ L TA+I+MYAK
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 178
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI GY++ G NE+L F K+ GV D+V MV V+ A + GA +I K+
Sbjct: 304 MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 363
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
Q+++ L + + +A G + AR+ +S AMI+ Y G+ +AL
Sbjct: 364 FQLDVILGT----AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 419
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F + G+ +++T+V +L A S G ++ G
Sbjct: 420 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 453
>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
M+SGY Q G + E+LE F ++ V DEV +V VL+A A+I+
Sbjct: 339 MMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYG 398
Query: 52 LQIE-------LDL--------------------SSYSLSSKTSRYAHSGRIRLARD--- 81
+ ++ LDL S+ S +S + SG + ARD
Sbjct: 399 MLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFN 458
Query: 82 ------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
VS M++ Y + FNE+ E F K++S V D+ T++ +L++ + GAL+
Sbjct: 459 KIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNH 518
Query: 136 G--------KSNI----FLTTAIIEMYAK 152
G K+ I L TA+I+MY K
Sbjct: 519 GIWVNVYIEKNEIGIDAMLGTALIDMYGK 547
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++ Y + FNE+ E F K++S V D+ T++ +L++ + GA W+ + E
Sbjct: 471 MVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNE 530
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ Y G + +A ++ AM++ Y+ G+ EA++ +
Sbjct: 531 IGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYL 590
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E GV D VT + +LAA S G +D G
Sbjct: 591 EMEERGVKPDHVTFIALLAACSHGGLVDEG 620
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 85/211 (40%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS----------------GPG 44
MIS Y G + EAL+ F ++ GV DE+TMV +++ +
Sbjct: 205 MISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNK 264
Query: 45 AWILAKELQIELDLSS--------YSLSSKT--------------SRYAHSGRIRLARDP 82
WI L +D+ S + L S+ S Y S +I AR
Sbjct: 265 LWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQL 324
Query: 83 ---------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
VS M+SGY Q G + E+LE F ++ V DEV +V VL+A
Sbjct: 325 FDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDF 384
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
D G+S + FL A++++YAK
Sbjct: 385 DLGRSVHAFIVTYGMLVDGFLGNALLDLYAK 415
Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S MIS Y G + EAL+ F ++ GV DE+TMV +++ + L+ GK
Sbjct: 197 RDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRL 256
Query: 139 NIF-----------LTTAIIEMYAK 152
+++ L +++MY+K
Sbjct: 257 HLYIVDNKLWIRGSLLNCLVDMYSK 281
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 81/170 (47%), Gaps = 20/170 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q G F EALE F ++ G + +V LTA + GA WI A +
Sbjct: 191 MITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNR 250
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L ++ YA G + L RD + ++ISG + G A+E F
Sbjct: 251 MVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFT 310
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMY 150
++++ GV +EVT + +L+A S G ++ G +NI+ +++ Y
Sbjct: 311 RMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 360
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA SG++ +AR + VS AMI+GY+Q G F EALE F ++ G + +
Sbjct: 164 YAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAI 223
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V L A + GALD G+ + L TA+I+MYAK
Sbjct: 224 VGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAK 267
>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Glycine max]
Length = 566
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQIE 55
+ISGY Q G N+AL F ++E + V DE +V +++AS+ G W+ + +I
Sbjct: 293 LISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQWVDSYVSKIC 352
Query: 56 LDLSS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+DL + +++ A G + A RD V +MI G S GR EA+ F
Sbjct: 353 IDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYCSMIQGLSIHGRGEEAVNLF 412
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ G+ DEV V+L A S G +D G++
Sbjct: 413 NRMLMEGLTPDEVAFTVILTACSRAGLVDEGRN 445
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L +D V+ A+ISGY Q G N+AL F ++E + V DE +V +++AS+ G L+ +
Sbjct: 283 LEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASAQLGHLELAQ 342
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASS-----GPGAWILA--KE 51
MI+GY+Q G +A++ F ++ S DEVTMV V +A G G W ++ K
Sbjct: 359 MIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKV 418
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
I++ +S Y+ S + Y+ G ++ A RD VS +ISG+++ G E++
Sbjct: 419 NHIQISISVYN--SLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESI 476
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
E K++ G+ D +T + +L A S G LD G+
Sbjct: 477 ELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQ 511
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELD-- 57
M+SGY+Q G E + F + S G V DE T V+++ S G L++ + +LD
Sbjct: 222 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDK 281
Query: 58 --------------------------------------LSSYSLSSKTSRYAHSGRIRLA 79
SS ++ S YA G + A
Sbjct: 282 VGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSA 341
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASS 128
RD VS +MI+GY+Q G +A++ F ++ S DEVTMV V +A
Sbjct: 342 KHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACG 401
Query: 129 GPGALDFG------------KSNIFLTTAIIEMYAK 152
G L G + +I + ++I MY++
Sbjct: 402 HLGELGLGNWAVSILKVNHIQISISVYNSLINMYSR 437
Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 35/166 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G EA F + + + +T ++T + G
Sbjct: 156 MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKG---------------- 199
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
+ KT+R R VS AM+SGY+Q G E + F + S G V DE T
Sbjct: 200 ---NLKTARMYFDKMPE--RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 254
Query: 120 MVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
V+++ S G +S N F+ TA+++M+AK
Sbjct: 255 WATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAK 300
>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 598
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY QAG EAL F ++++ GV D+ +V VL A + GA W+
Sbjct: 196 MVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANN 255
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + ++ YA G ++L ++ ++ MI G + GR +++L F
Sbjct: 256 IRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFS 315
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ES GV D++ + L A + G +D G+
Sbjct: 316 QMESSGVKPDDIAFIGALCACTHTGLVDKGR 346
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS AM++GY QAG EAL F ++++ GV D+ +V VLAA + GAL+ GK
Sbjct: 188 RNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWV 247
Query: 138 ------SNI----FLTTAIIEMYAK 152
+NI FL TA+++MYAK
Sbjct: 248 HGYLKANNIRMTVFLGTALVDMYAK 272
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR +++L F ++ES GV D++ + L A + G +EL + +++
Sbjct: 297 MIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSM-VNN 355
Query: 61 YSLSSKTSRY-------AHSGRIRLARD-----PVSCKAMISGYSQAG-RFNEALE 103
Y + K Y A +G + ARD P+ A+I G AG RF++ +E
Sbjct: 356 YGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVE 411
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+QA R EALE F ++ +GV DEV MV+V++A + G E+ +D +
Sbjct: 448 MVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEVHRYIDENG 507
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + LA + ++ +MIS + G +A F
Sbjct: 508 FGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFT 567
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ D VT + +L A + G +D G
Sbjct: 568 LMLXSGIRPDGVTFLALLTAYTHKGWVDDG 597
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS M+SGY+QA R EALE F ++ +GV DEV MV+V++A + G L+ G
Sbjct: 440 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDLETGFEV 499
Query: 137 ----KSNIF-----LTTAIIEMYAK 152
N F L A+I+MYAK
Sbjct: 500 HRYIDENGFGWMVSLCNALIDMYAK 524
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASS-----GPGAWILA--KE 51
MI+GY+Q G +A++ F ++ S DEVTMV V +A G G W ++ K
Sbjct: 302 MIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGELGLGNWAVSILKV 361
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
I++ +S Y+ S + Y+ G ++ A RD VS +ISG+++ G E++
Sbjct: 362 NHIQISISVYN--SLINMYSRCGSMQDAVLIFQEMATRDLVSYNTLISGFAEHGHGMESI 419
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
E K++ G+ D +T + +L A S G LD G+
Sbjct: 420 ELLSKMKEDGIEPDRITYIAILTACSHAGLLDEGQ 454
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELD-- 57
M+SGY+Q G E + F + S G V DE T V+++ S G L++ + +LD
Sbjct: 165 MLSGYAQGGAPEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDK 224
Query: 58 --------------------------------------LSSYSLSSKTSRYAHSGRIRLA 79
SS ++ S YA G + A
Sbjct: 225 VGFRPNYFVKTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSA 284
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASS 128
RD VS +MI+GY+Q G +A++ F ++ S DEVTMV V +A
Sbjct: 285 KHLFDKMPQRDTVSWNSMIAGYTQNGESFKAIKLFEEMISSEDSRKPDEVTMVSVFSACG 344
Query: 129 GPGALDFG------------KSNIFLTTAIIEMYAK 152
G L G + +I + ++I MY++
Sbjct: 345 HLGELGLGNWAVSILKVNHIQISISVYNSLINMYSR 380
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 67/166 (40%), Gaps = 35/166 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G EA F + + + +T ++T + G
Sbjct: 99 MISGYWKCGNEEEASTLFHVMGDQEISRNVITWTTMITGHAKKG---------------- 142
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
+ KT+R R VS AM+SGY+Q G E + F + S G V DE T
Sbjct: 143 ---NLKTARMYFDKMPE--RSVVSWNAMLSGYAQGGAPEETIRLFNDMLSPGNVQPDETT 197
Query: 120 MVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
V+++ S G +S N F+ TA+++M+AK
Sbjct: 198 WATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAK 243
>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g11460
gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 623
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGY+ + +A F +++ GV D VTM+ ++ + P L + L +
Sbjct: 127 LISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGG 186
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
LD L+S + Y G + R PV + A+ISGYSQ G + LE +
Sbjct: 187 LDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++S GV D T+V VL++ + GA G N+F++ A I MYA+
Sbjct: 247 QMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYAR 304
>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
Length = 886
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IE-- 55
MISGY + G + EAL F + GV D +T VL A S KE+ IE
Sbjct: 572 MISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESK 631
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+++ + + YA G + A RD VS +MI+ Y G+ EAL+ F
Sbjct: 632 LEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFE 691
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ D+VT + +L+A S G +D G
Sbjct: 692 KMQQSDAKPDKVTFLAILSACSHAGLVDEG 721
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q G+ +ALE F +++ G D VT+ V+++ + KE+ +EL S
Sbjct: 370 VISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSG 429
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L S+ Y G + +A ++ VS +MI+GYS G +E F
Sbjct: 430 FALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFR 489
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ T+ +L A S L GK ++IF+ +++I++Y K
Sbjct: 490 RMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFK 547
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GYS G +E F +++ G+ T+ +L A S G +I ++
Sbjct: 471 MIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNR 530
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
++ + SS Y G I A + VS MISGY + G + EAL F
Sbjct: 531 VEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFT 590
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ GV D +T VL A S L+ GK N + A+++MYAK
Sbjct: 591 DMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAK 648
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 72/169 (42%), Gaps = 27/169 (15%)
Query: 11 FNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSL-----S 64
F E LE F +L + D T VL A SG G K + + S +++ S
Sbjct: 278 FIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMS 337
Query: 65 SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
S YA A RD S +IS Y Q G+ +ALE F +++ G
Sbjct: 338 SAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKP 397
Query: 116 DEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
D VT+ V+++ + L+ GK + F+++A+++MY K
Sbjct: 398 DSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK 446
>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 554
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY Q RF+EALE F +++ + D +V +LT + GA WI +
Sbjct: 234 MMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENR 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G I A RD S ++I G + G AL+ +
Sbjct: 294 VTVDKVVGTALVDMYAKCGCIETALGVFYEMKERDTASWTSLIYGLATNGMSGRALDLYY 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++E++GV D++T V VL A S G + G+ + T
Sbjct: 354 EMENVGVRLDDITFVAVLTACSHGGFVAEGRRIFYSMT 391
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 86/215 (40%), Gaps = 69/215 (32%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI----- 54
+IS Y GRF +A+ F ++ + DE T+V L+A S + K L+I
Sbjct: 102 LISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACS------VLKNLEIGERIY 155
Query: 55 -----ELDLSSYS-------------------------------LSSKTSRYAHSGRIRL 78
E ++S + +S S Y +GR
Sbjct: 156 RYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVSGYVSNGRTDE 215
Query: 79 AR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
AR D V AM++GY Q RF+EALE F +++ + D +V +L +
Sbjct: 216 ARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFVLVSLLTGCAQ 275
Query: 130 PGALDFGK------------SNIFLTTAIIEMYAK 152
GAL+ GK + + TA+++MYAK
Sbjct: 276 TGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAK 310
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ +++ F + L FG+L G++ D T+ VVL + G + ++
Sbjct: 1 MLKSLAESKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKTG 60
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ SY +S YA G++ + RD VS +IS Y GRF +A+ F
Sbjct: 61 LESDSYVCNSLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQ 120
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + DE T+V L+A S L+ G+
Sbjct: 121 RMSRESNLKADEGTIVSTLSACSVLKNLEIGE 152
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+Q +EA + F + G+ +E TMV +L + G+ + K + +D
Sbjct: 400 MISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQG 459
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ KTS YA+ G I A RD AMISG++ G ALE F
Sbjct: 460 IKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFE 519
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E+LGV +++T + L A S G L GK
Sbjct: 520 EMEALGVTPNDITFIGALHACSHSGLLQEGK 550
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y NE + F K+ G+ +E+TM+ ++ GA L K L +
Sbjct: 299 MIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNG 358
Query: 61 YSLS-----SKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++LS + Y G +R AR D + AMIS Y+Q +EA + F
Sbjct: 359 FTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFV 418
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ G+ +E TMV +L + G+L+ G K ++ L T+ ++MYA
Sbjct: 419 HMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYAN 476
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI Y ++G +EAL+ + + V E+ M+ + + L K +
Sbjct: 196 MIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNG 255
Query: 54 ------IELDLSSYSLSSKTSRYAHSGRIR--LAR-DPVSCKAMISGYSQAGRFNEALEP 104
+ L + + K A++ R+ L++ +S AMI+ Y NE +
Sbjct: 256 KCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRL 315
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F K+ G+ +E+TM+ ++ GAL+ GK ++ L TA I+MY K
Sbjct: 316 FVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGK 375
Score = 35.8 bits (81), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 23/106 (21%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y+ G + LAR D VS MI Y ++G +EAL+ + + V E+ M
Sbjct: 169 YSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGM 228
Query: 121 VVVLAASSGPGALDF--------------GKSNIFLTTAIIEMYAK 152
+ + + L GKS + L TA+I+MY K
Sbjct: 229 ISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274
>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Glycine max]
Length = 916
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISG+++ + EAL F ++ GV + T+ VL+A + G + A ++
Sbjct: 188 MISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQG 247
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFG 106
+ S Y SS + Y AR D +S K AM+ YSQ G + +E F
Sbjct: 248 FESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFL 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ S G+H DE T +L+ + L+ G+ SN+F+ A+I+MYAK
Sbjct: 308 DMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNALIDMYAK 365
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY QAG +EAL F K+ + V D+V +V VL A G A +L ++ +
Sbjct: 121 LISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQLFQQMPIP- 178
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R+ V+ MISG+++ + EAL F ++ GV + T+
Sbjct: 179 ------------------IRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTL 220
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + AL+ G +S+I++ +++I MY K
Sbjct: 221 ASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGK 264
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M+ YSQ G + +E F + S G+H DE T +L+ + + ++L I+
Sbjct: 289 MLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKR 348
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S + ++ YA +G ++ A RD +S A+I GY Q A F
Sbjct: 349 FTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFSLFR 408
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ DEV++ +L+A L+ G+ +N+F +++I+MY+K
Sbjct: 409 RMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSK 466
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
VS A+ISGY QAG +EAL F K+ + V D+V +V VL A G LD
Sbjct: 116 VSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLD 166
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G++Q RF EAL+ F ++ ++ + L+A S L ++ + S
Sbjct: 127 MIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSK 186
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
YSL S Y+ G + AR + VS +I+ Y Q G EALE FG
Sbjct: 187 YSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFG 246
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
++ LG DEVT+ V++A + A G ++++ L A+++MYAK
Sbjct: 247 RMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAK 305
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 66/164 (40%), Gaps = 20/164 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EAL F L+ V T +L AS+ L ++ +
Sbjct: 361 LIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHG 420
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
+ +S Y G + + +D VS MI GY+Q G E
Sbjct: 421 FRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGME 480
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
ALE F K+ G D VTM+ L A S G ++ G+ F T
Sbjct: 481 ALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMT 524
Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 83/216 (38%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+ Y Q G EALE FG++ LG DEVT+ V++A + G I A+ ++ +
Sbjct: 228 LITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKSD 287
Query: 56 LDLSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMIS--------------- 90
+ L ++ YA GR+ AR + VS M+S
Sbjct: 288 KFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMF 347
Query: 91 ----------------GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
GY+Q G EAL F L+ V T +L AS+ L+
Sbjct: 348 ATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLE 407
Query: 135 FGKS------------------NIFLTTAIIEMYAK 152
G+ +IF+ ++I+MY K
Sbjct: 408 LGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMK 443
>gi|297820962|ref|XP_002878364.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324202|gb|EFH54623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 767
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISGY ++G EA F +++S G+ +E T+ VL + G I ++
Sbjct: 97 LISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTLGSVLRMCTSLLLLLRGEQIHGHTIKTG 156
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
DL ++ + YA RI A ++ V+ +M++GYSQ G +A+E F
Sbjct: 157 FDLDVNVVNGLLAMYAQCKRISEAEYLFDTMAGEKNNVTWTSMLTGYSQNGFAFKAIECF 216
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
L G +++ T VL A + A G K+NI++ +A+I+MYAK
Sbjct: 217 RDLRRDGNQSNQYTFPSVLTACASVSACRVGVQVHGCIVKSGFKTNIYVQSALIDMYAK 275
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + G EAL FG++ + D+ T+ +L + + ++++ S+
Sbjct: 300 MIVGCVRQGLIEEALSMFGRMHERDMKIDDFTIPSILNCFA-------SSRTEMKIASSA 352
Query: 61 YSLSSKTSRYAHSGRIR----------LARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ L K S I + +D +S A+++G + G + EAL+ F +
Sbjct: 353 HCLIVKPGMRLTSLGIMDSALKVFEGMIEKDVISWTALVTGNTHNGFYEEALKLFCNMRV 412
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G++ D++ VL+AS+ L+FG+ S++ + +++ MY K
Sbjct: 413 GGIYPDQIVTASVLSASAELTLLEFGQQVHGNYIKSGFPSSLSVNNSLVTMYTK 466
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M++GYSQ G +A+E F L G +++ T VLTA + A + ++ +
Sbjct: 199 MLTGYSQNGFAFKAIECFRDLRRDGNQSNQYTFPSVLTACASVSACRVGVQVHGCIVKSG 258
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA + AR D VS +MI G + G EAL FG
Sbjct: 259 FKTNIYVQSALIDMYAKCRDLESARALLEGMEVDDVVSWNSMIVGCVRQGLIEEALSMFG 318
Query: 107 KLESLGVHTDEVTMVVVL 124
++ + D+ T+ +L
Sbjct: 319 RMHERDMKIDDFTIPSIL 336
Score = 36.6 bits (83), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 25/124 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ S++GR +EA + F K+ DE T ++ A
Sbjct: 35 LLGDLSKSGRVDEARQMFDKMPE----RDEFTWNTMIVA--------------------- 69
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YS S + + R ++ +S A+ISGY ++G EA F +++S G+ +E T+
Sbjct: 70 YSNSRRLADAEQLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFWEMQSDGIKPNEYTL 129
Query: 121 VVVL 124
VL
Sbjct: 130 GSVL 133
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 71/156 (45%), Gaps = 28/156 (17%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSLSSKTSRYAHSGRIRLA 79
GV D T V A + GA ++LQ L +S +S S Y G LA
Sbjct: 133 GVEPDSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLA 192
Query: 80 R-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128
R S A+++ Y++AGR+ E +E FG + G DE +MV L+A +
Sbjct: 193 RRAFEQMEDDEQTTASWSALLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACA 252
Query: 129 GPGALDFGKS------------NIFLTTAIIEMYAK 152
GA D G+S N F++T++++MYAK
Sbjct: 253 HLGAHDVGRSIHCALLRNTARLNTFMSTSLVDMYAK 288
Score = 54.3 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+++ Y++AGR+ E +E FG + G DE +MV L+A + GA + + + L
Sbjct: 212 LLAAYTRAGRWAECVESFGAMVRAGWRPDESSMVSALSACAHLGAHDVGRSIHCALLRNT 271
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+++ +S YA G I A ++ + AM+SG + G +ALE F
Sbjct: 272 ARLNTFMSTSLVDMYAKCGCIENAAAVFDAMDDKNAWTYSAMVSGLALHGDGRKALEVFD 331
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G D V VL A S G L+ G
Sbjct: 332 AMVREGHRPDAAVYVGVLNACSRAGLLEEG 361
>gi|255553249|ref|XP_002517667.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543299|gb|EEF44831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+G++Q RF EAL F K+ G +E T L+A +G G I L+ +
Sbjct: 122 LIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIHGLMLKSQ 181
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + A R+ VS ++I+ Y Q G EALE F
Sbjct: 182 FLLDVYMGSALIDIYSKCGFVDCAQRVFDGMMERNVVSWNSLITCYEQNGPSREALEIFM 241
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
++ G DEVT+ V++A + A G + ++ L+ A+++MYAK
Sbjct: 242 RMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRDKLRDDLILSNALVDMYAK 300
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 64/160 (40%), Gaps = 20/160 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EAL F L+ + T +L A + L ++ +
Sbjct: 356 LIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQLGRQAHAHVLKHG 415
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
+ ++ Y G + + RD VS AMI GY+Q G E
Sbjct: 416 FRFQYGEESDVFVGNALIDMYMKCGSVEEGCRIFENMVERDYVSWNAMIVGYAQNGYGME 475
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
AL F K+ + G D VTM+ L A S G + G+ +
Sbjct: 476 ALGLFRKMLASGEKPDHVTMIGALCACSHAGLVQEGRKHF 515
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW----------ILAK 50
+I+ Y Q G EALE F ++ G DEVT+ V++A + A +
Sbjct: 223 LITCYEQNGPSREALEIFMRMMESGFEPDEVTLASVVSACASLAAAKQGLEIHACVVKRD 282
Query: 51 ELQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLAR--- 80
+L+ +L LS+ S +S S YA + ++ AR
Sbjct: 283 KLRDDLILSNALVDMYAKCGRINEARCVFDRMPIRNVVSETSMVSGYAKTASVKAARLLF 342
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
+ VS A+I+GY+Q G EAL F L+ + T +L A + L
Sbjct: 343 TKMIERNVVSWNALIAGYTQNGENEEALRLFRMLKREAICPTHYTFGNLLNACANLADLQ 402
Query: 135 FGK------------------SNIFLTTAIIEMYAK 152
G+ S++F+ A+I+MY K
Sbjct: 403 LGRQAHAHVLKHGFRFQYGEESDVFVGNALIDMYMK 438
Score = 40.0 bits (92), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-- 138
D S ++I+G++Q RF EAL F K+ G +E T L+A +G L G
Sbjct: 115 DQCSWNSLIAGFAQHDRFEEALNYFVKMHRKGFVLNEYTFGSGLSACAGLKDLKIGTQIH 174
Query: 139 ----------NIFLTTAIIEMYAK 152
++++ +A+I++Y+K
Sbjct: 175 GLMLKSQFLLDVYMGSALIDIYSK 198
>gi|356567066|ref|XP_003551744.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 488
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
LQ+ L++ S S + +G + +AR D VS AM++GYSQA R EAL
Sbjct: 169 LQLGLEVDVVSWSGLLVAHVKAGELEVARRVFDEMPQRDVVSWTAMLTGYSQAKRPREAL 228
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------KSNIF-----LTTAIIEMY 150
E FG++ GV DEVTMV +++A + G ++ G + N F L A+I+MY
Sbjct: 229 ELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENGFGWMVALCNALIDMY 288
Query: 151 AK 152
K
Sbjct: 289 GK 290
Score = 52.0 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 20/153 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------------- 44
M++GYSQA R EALE FG++ GV DEVTMV +++A + G
Sbjct: 214 MLTGYSQAKRPREALELFGEMRRSGVWPDEVTMVSLVSACASLGDMETGMMVHRFVEENG 273
Query: 45 -AWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
W++A +D+ + + G R + ++ M++ + G +EA
Sbjct: 274 FGWMVAL-CNALIDMYGKCGCLEEAWRVFHGMTR--KSLITWNTMVTVCANYGNADEAFR 330
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F + GV D VT++ +L A + G +D G
Sbjct: 331 LFEWMVCSGVVPDSVTLLALLVAYAHKGLVDEG 363
>gi|302817606|ref|XP_002990478.1| hypothetical protein SELMODRAFT_131937 [Selaginella moellendorffii]
gi|300141646|gb|EFJ08355.1| hypothetical protein SELMODRAFT_131937 [Selaginella moellendorffii]
Length = 281
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
MISGY + GR +ALE F ++ G+H +++T + + A + A + + L E+ S
Sbjct: 12 MISGYVKNGRGWDALEIFKLMDLAGMHPNDITFMSAIDACADLQALLEGQILHAEITASG 71
Query: 60 ----SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+Y ++ Y G + +A RD S MIS Y+ AG +L F
Sbjct: 72 TEPDAYLRNALLHMYGRCGSLAMAESLFDDMPDRDRWSWNVMISSYAHAGHTRRSLAFFA 131
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D VT V VL A S G +D G
Sbjct: 132 EMALDGITPDGVTFVAVLGACSHAGRVDLG 161
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ S AMISGY + GR +ALE F ++ G+H +++T + + A + AL G+
Sbjct: 4 RNVASWNAMISGYVKNGRGWDALEIFKLMDLAGMHPNDITFMSAIDACADLQALLEGQIL 63
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ +L A++ MY +
Sbjct: 64 HAEITASGTEPDAYLRNALLHMYGR 88
>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
multiple PPR PF|01535 repeats. ESTs gb|AV565358,
gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
thaliana]
gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
Length = 1322
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G + KE LQ
Sbjct: 1003 MIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNG 1062
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L + + C ++I G + G EAL+ F
Sbjct: 1063 FVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFA 1122
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E V + VT V V A + G +D G+
Sbjct: 1123 KMEMESVKPNAVTFVSVFTACTHAGLVDEGR 1153
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D +S MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G L+ GK
Sbjct: 995 KDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEV 1054
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +A+++MY+K
Sbjct: 1055 HMYTLQNGFVLDVYIGSALVDMYSK 1079
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G + G EAL+ F K+E V + VT V V TA + G + + + +
Sbjct: 1104 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM-IDD 1162
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
YS+ S Y M+ +S+AG EALE G +E
Sbjct: 1163 YSIVSNVEHYG---------------GMVHLFSKAGLIYEALELIGNME 1196
>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570-like [Brachypodium distachyon]
Length = 531
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q GR E++ F +LE++G+ D TMV V++++S G+ W+ +
Sbjct: 247 MINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKR 306
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + L++ +A G + A D A+ISG + G AL+ F
Sbjct: 307 IERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFE 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + V D +T V VL A S G +D G
Sbjct: 367 RMRAQAVRPDPITFVGVLTACSHAGLVDMG 396
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------ 136
V+ AMI+GY+Q GR E++ F +LE++G+ D TMV V++++S G+
Sbjct: 242 VTWTAMINGYAQCGRPKESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNY 301
Query: 137 ------KSNIFLTTAIIEMYAK 152
+ N + TA+++M+AK
Sbjct: 302 VDRKRIERNEKVLTALVDMHAK 323
>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISG+ Q G E L +++ G D VT+ +L+A+S + K+
Sbjct: 276 MISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHG 335
Query: 54 IELD-LSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEA 101
I+ D + SY + YA SG IR++ RD + A+I+GY+Q G +A
Sbjct: 336 IKFDGMDSYLID----MYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQA 391
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
F + + + VT+ +L A S G+++ GK NIF+ TA+++M
Sbjct: 392 FITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDM 451
Query: 150 YAK 152
Y+K
Sbjct: 452 YSK 454
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 33/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-------ELQ 53
M+S Y + R+ EA+ F + G+ V+ V V A S G + A +L
Sbjct: 71 MVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVGDFKNANVLYGMLLKLG 130
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLARDPV-SC--------KAMISGYSQAGRFNEALEP 104
E + +SS S YA G + L R SC MI G+ Q F E +
Sbjct: 131 NEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYL 190
Query: 105 FGKLESLGV-HT--DEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
F L+++ HT D+VT + L A S L G+ ++ + AI+ M
Sbjct: 191 F--LQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNHTVLSVTVLNAILVM 248
Query: 150 YAK 152
Y++
Sbjct: 249 YSR 251
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ G FN+A F ++ G+ +EV++ VL+A + GA+ + L ++ S
Sbjct: 240 MIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSG 299
Query: 61 Y----SLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+++ Y+ G + +AR VS AMI+G + G EA+ F
Sbjct: 300 FLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFN 359
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
++E + D +T + +L A S G +D G S N + +IE Y M
Sbjct: 360 EMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCM 412
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y +G ++LAR D VS MI G++ G FN+A F ++ G+ +EV++
Sbjct: 213 YTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSL 272
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL+A + GA +FG+ I + A+I+ Y+K
Sbjct: 273 TGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSK 316
>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 678
Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G + G+F EA++ F L G+ D +V VL A + G WI +
Sbjct: 176 MICGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECG 235
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + + +S Y G + AR D V AMI GY+ G EA+E F
Sbjct: 236 LSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFF 295
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + V D MV L++ + GAL+ G SN L T++I+ YAK
Sbjct: 296 EMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAK 353
Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE----LQIEL 56
MI GY+ G EA+E F ++ + V D MV L++ + GA L + E
Sbjct: 277 MIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGALSSCASLGALELGNWAKGLMNYEE 336
Query: 57 DLSSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LS+ L +S YA G + A +D V A+ISG + G+ A FG
Sbjct: 337 FLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFG 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ G+ +E T V +L + G +D G+ S+ F T IE Y M
Sbjct: 397 QMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCM 449
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+GY Q RF++A+ F +++ V D T+V +LT + G WI + +
Sbjct: 336 MINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENK 395
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ YA G I + +D S ++I G + G+ ++ALE F
Sbjct: 396 IMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFA 455
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ GV D++T + VL+A S G ++ G+ + TA+ ++ K+
Sbjct: 456 EMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKL 502
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 87/209 (41%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
+ISGY + R+ +A++ F +++ + +E T+V L+A L KE+
Sbjct: 204 LISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQ 263
Query: 54 -----------IELDLSSYSLS------------------SKTSRYAHSGRIRLAR---- 80
+++ LS S S Y + G++ AR
Sbjct: 264 LGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFE 323
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D V AMI+GY Q RF++A+ F +++ V D T+V +L + G L+
Sbjct: 324 RSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQ 383
Query: 136 GK--------SNIFLT----TAIIEMYAK 152
GK + I + TA+IEMYAK
Sbjct: 384 GKWIHGYIDENKIMIDAVVGTALIEMYAK 412
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+I+GY+QA R ++A+ F +++ V DE+ M+V LTA + GA WI ++
Sbjct: 185 LITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLG 244
Query: 56 LDLSSYSLSSK-TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L ++ L++ YA SG I+ A + ++ MI+G + G EALE F
Sbjct: 245 LLTTNIPLNNALIDMYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMF 304
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E V +++T + +L+A S G + G+
Sbjct: 305 SRMERARVKPNDITFIAILSACSHVGLVQTGR 336
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 27/156 (17%)
Query: 24 LGVHTD--EVTMVVVLTASSGPGAWILAKELQIELDLSSYSL---SSKTSRYAHSGRIRL 78
G+H+D +T V + +S G G A+++ + +S+ + ++ + YA G +
Sbjct: 107 FGLHSDLHVLTAFVQMYSSFGSGCICDARKMFDGMSMSTGDVALWNAMLNGYAKHGDLCN 166
Query: 79 ARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
ARD +S A+I+GY+QA R ++A+ F +++ V DE+ M+V L A +
Sbjct: 167 ARDLFERMPQRNVISWTALITGYAQANRPHDAIALFRRMQLENVEPDEIAMLVALTACAR 226
Query: 130 PGALDFGK-------------SNIFLTTAIIEMYAK 152
GAL+ G+ +NI L A+I+MYAK
Sbjct: 227 LGALELGEWIRHYIDRLGLLTTNIPLNNALIDMYAK 262
>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
Length = 673
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKELQIE--- 55
MI+ Y+Q G EA+ + K+ ++G + + V + VL A + GA K + +
Sbjct: 270 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR 329
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L+ + Y +S Y+ GR+ +A ++ +S AMI+GY GR EALE
Sbjct: 330 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 389
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G+ + +T + VLAA S G LD G+
Sbjct: 390 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 422
Score = 42.7 bits (99), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASSGPGALDF 135
+ RD VS +MI+ Y+Q G EA+ + K+ ++ G+ + V + VL A + GA+
Sbjct: 260 MERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 319
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK N+++ T+I++MY+K
Sbjct: 320 GKRIHNQVVRMGLEENVYVGTSIVDMYSK 348
>gi|356557931|ref|XP_003547263.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g04370-like [Glycine max]
Length = 764
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISG Q G ++AL F ++ GV + TM V+TA + G++ L + + E
Sbjct: 340 MISGLVQNGSADKALAVFRQMLKFGVKSSTATMASVITACAQLGSYNLGTSVHGYMFRHE 399
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + + +S + +A G + + R+ VS AMI+GY+Q G +AL F
Sbjct: 400 LPMDIATQNSLVTMHAKCGHLDQSSIVFDKMNKRNLVSWNAMITGYAQNGYVCKALFLFN 459
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S D +T+V +L + G L GK I + T++++MY K
Sbjct: 460 EMRSDHQTPDSITIVSLLQGCASTGQLHLGKWIHSFVIRNGLRPCILVDTSLVDMYCK 517
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 71/175 (40%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+ +S G + L + + V +D T +L A S + L L
Sbjct: 40 IINHHSSQGAHRQVLATYASMLKTHVPSDAYTFPSLLKACSSLNLFSLGLSLHQRILVSG 99
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L L +Y SS + YA G +AR + V ++I YS+ GR EA F
Sbjct: 100 LSLDAYIASSLINFYAKFGFADVARKVFDFMPERNVVPWTSIIGCYSRTGRVPEAFSLFD 159
Query: 107 KLESLGVHTDEVTMVVVLAASS---------GPGALDFGKSNIFLTTAIIEMYAK 152
++ G+ VTM+ +L S G L S+I L+ +++ MY K
Sbjct: 160 EMRRQGIQPSSVTMLSLLFGVSELAHVQCLHGSAILYGFMSDINLSNSMLSMYGK 214
>gi|226528958|ref|NP_001141436.1| uncharacterized protein LOC100273546 [Zea mays]
gi|194704572|gb|ACF86370.1| unknown [Zea mays]
gi|414877969|tpg|DAA55100.1| TPA: hypothetical protein ZEAMMB73_905907 [Zea mays]
Length = 700
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
+ISG+ Q RF +AL F + D T L A + + ++L L S
Sbjct: 427 VISGFVQNDRFVDALHHFMLMRRGTNRADWSTYASCLRACANLAVLHVGRQLHNLLVRSG 486
Query: 60 ----SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S++ ++ S YA GRI A+ D VS A+I GY+ G+ EA+ F
Sbjct: 487 HINDSFAGNALISTYAKCGRILEAKQIFDEMVYKDIVSWNALIDGYASNGQGTEAIAVFR 546
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD------FGKSNIFLTTAIIEMYAKM 153
++E+ GV DEVT V +L+A S G +D + + +L + E YA M
Sbjct: 547 EMEANGVRPDEVTFVGILSACSHAGLIDEGLFFFYSMTKEYLLKPVAEHYACM 599
Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-S 59
M+S ++ GR +EA F + + V+ ++ A S G A+ L + +
Sbjct: 55 MLSALARHGRIDEARALFDGMPG----RNTVSWNAMIAALSDHGRVADARSLFDRMPVRD 110
Query: 60 SYSLSSKTSRYAHSGRIRLARDPV---------SC-KAMISGYSQAGRFNEALE 103
+S + S YA G + LARD + +C AMISGY++ GRF++A++
Sbjct: 111 EFSWTVMVSCYARGGDLELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAMK 164
>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 833
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY++ G +A F ++ G+ D +T + ++ A + A+E+ ++D++
Sbjct: 331 MIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAG 390
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I+ AR D VS AMI Y + G EA E F
Sbjct: 391 FGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFH 450
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D VT + +L A GALD G S++ L A+I M AK
Sbjct: 451 LMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAK 508
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I+GY+Q G EA F ++ G+ +T + VL A S P KE+ ++
Sbjct: 129 LIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAG 188
Query: 58 -LSSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S + + ++ S Y G + A RD + M+ GY+++G + +A E F
Sbjct: 189 FVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFY 248
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
+++ +G+ ++++ + +L P AL +GK+ +I + T++I MY
Sbjct: 249 RMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMY 304
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA--W---ILAKELQIE 55
M+ GY+++G + +A E F +++ +G+ ++++ + +L P A W + A+ +
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L +S Y G I AR D VS MI GY++ G +A F
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D +T + ++ A + L+ + +++ ++TA++ MYAK
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAK 407
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
MI Y + G EA E F ++ + D VT + +L A GA + E+ I+ D
Sbjct: 432 MIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKAD 491
Query: 58 LSSY-------------SLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
L S+ S + +RY +R RD ++ AMI GYS G EAL
Sbjct: 492 LVSHVPLGNALIIMNAKHGSVERARYIFDTMVR--RDVITWNAMIGGYSLHGNAREALYL 549
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ + VT V VL+A S G +D G+
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDEGR 582
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 29/167 (17%)
Query: 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSLSSK 66
N+ L+ G+ G H D T V + + L K+++ + L+ Y L++
Sbjct: 42 NDVLQRLGEG---GNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTL 98
Query: 67 TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
Y+ G + AR V+ A+I+GY+Q G EA F ++ G+
Sbjct: 99 IKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSI 158
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+T + VL A S P L++GK S+ + TA++ MY K
Sbjct: 159 ITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVK 205
>gi|302800501|ref|XP_002982008.1| hypothetical protein SELMODRAFT_115449 [Selaginella moellendorffii]
gi|300150450|gb|EFJ17101.1| hypothetical protein SELMODRAFT_115449 [Selaginella moellendorffii]
Length = 278
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 29/160 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI ++ G+ EALE F ++ G+ DE+T + VL + S G ++ K L
Sbjct: 32 MIEAHACNGQSKEALETFWQMNQDGIDADEITFISVLHSCSHTG--MVEKSLHQFARALF 89
Query: 54 ---IELDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNE 100
D+ ++ ++ YA++G++ AR + VS M++GYSQ G++
Sbjct: 90 DAIARPDVVAW--NTMIEAYANAGQLDQARALFDAMPVDKNVVSWTVMLTGYSQLGQYER 147
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASS-----GPGALDF 135
AL F +++ G+ D++T+ +L+A S GP L F
Sbjct: 148 ALGIFQRMDLDGIQQDDMTLTAILSACSHVGLVGPSKLHF 187
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 22/105 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YAH G + +R DP S AMI ++ G+ EALE F ++ G+ DE+T
Sbjct: 5 YAHKGCLDQSRELFNSLESRDPSSWTAMIEAHACNGQSKEALETFWQMNQDGIDADEITF 64
Query: 121 VVVLAASSGPGALD-------------FGKSNIFLTTAIIEMYAK 152
+ VL + S G ++ + ++ +IE YA
Sbjct: 65 ISVLHSCSHTGMVEKSLHQFARALFDAIARPDVVAWNTMIEAYAN 109
>gi|255565773|ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536964|gb|EEF38602.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 384
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
I G+ + G F +ALE F +++ V D VT++ VL+A + G G WI L+ E
Sbjct: 200 FIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKE 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ +S Y+ G I LAR VS ++I G++ G EALE FG
Sbjct: 260 FRNNVRIGNSLIDMYSRCGCIELARQVFHKMLKRTLVSWNSIIVGFAANGFAEEALEYFG 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G D V+ L A S G +D G
Sbjct: 320 LMQKEGFKPDGVSFTGALTACSHAGMVDEG 349
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D +S I G+ + G F +ALE F +++ V D VT++ VL+A + GAL G
Sbjct: 192 KDAISWTVFIDGFIKKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLWI 251
Query: 137 ---------KSNIFLTTAIIEMYAK 152
++N+ + ++I+MY++
Sbjct: 252 HRYVLEKEFRNNVRIGNSLIDMYSR 276
>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
Length = 862
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+ISGY G +AL+ F L + + VT+ VL A + A L +E L+
Sbjct: 415 VISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNA 474
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GR+ L+ +D V+ +MIS +SQ G EAL+ F
Sbjct: 475 YEGKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFR 534
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+ + VT+ L+A + A+ +G K++IF +A+I+MYAK
Sbjct: 535 QMCMEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAK 592
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
M+ GY +AG A+ F + G + T+ L+ SG LA +
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCG 272
Query: 54 IELDLSS----YSLSSKTSRYAHSGRI--RLARDP-VSCKAMISGYSQAGRFNEALEPFG 106
+E +++ S+ +K + R+ L RD V+ MISG Q G +EAL F
Sbjct: 273 LEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFC 332
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G D VT+V +L A + L GK + FL +A++++Y K
Sbjct: 333 DMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFK 390
>gi|242084478|ref|XP_002442664.1| hypothetical protein SORBIDRAFT_08g000860 [Sorghum bicolor]
gi|241943357|gb|EES16502.1| hypothetical protein SORBIDRAFT_08g000860 [Sorghum bicolor]
Length = 982
Score = 62.0 bits (149), Expect = 8e-08, Method: Composition-based stats.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
+I+ Y AGR EA+ + + G+ D VT V VLTA + G W +A++
Sbjct: 661 LITAYMDAGRAQEAVGVARRAFASGMRPDSVTAVRVLTACARVADLVNGEAVWKVAEQEG 720
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
I ++ + ++ Y G + AR D V+ AM+ GY+ G EALE
Sbjct: 721 IAGNM--FVATAALDLYVKCGEMDKAREVFDKMKNKDVVTWAAMVGGYASNGHPQEALEL 778
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ G+ D T+ L+A + GALD G+ N L TA+I+ YAK
Sbjct: 779 FFAMQVEGMRPDCYTVSGALSACTRLGALDLGRRVVGMLHWDEVLDNPVLGTALIDTYAK 838
>gi|302767656|ref|XP_002967248.1| hypothetical protein SELMODRAFT_61142 [Selaginella moellendorffii]
gi|300165239|gb|EFJ31847.1| hypothetical protein SELMODRAFT_61142 [Selaginella moellendorffii]
Length = 672
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKELQIEL 56
MIS Y Q+G EALE F K+E GV D VT+V +L S A ++ +L+ +
Sbjct: 258 MISAYVQSGHHREALELFEKMELEGVAPDVVTIVEILGVCSVLRKLDKARMIHAQLRARV 317
Query: 57 DLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPF 105
D + + S + Y + A RD ++ MI+ Y++ G AL+ F
Sbjct: 318 DADTAVVDSLLNVYRECRSLEDAVTVFREEAGGARDCIAWNTMIAAYAECGDPGMALKLF 377
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ GV EVT V VL A+S GAL G S
Sbjct: 378 TLMDLHGVEPTEVTYVAVLGAASSLGALTRGAS 410
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 65/150 (43%), Gaps = 19/150 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL--TASSGPGAWILAKELQIELDL 58
+I+ YSQ EAL + + GV D+V M+ L AS G I A + D
Sbjct: 158 LIAAYSQFKMGREALGLYRAMHLEGVAPDKVAMLSALGACASEPDGRAIHACIICCGSDG 217
Query: 59 SSYSLSSKTSRYAHSGRIRL----------ARDPVSC----KAMISGYSQAGRFNEALEP 104
S+ S Y GR ++ R P S +MIS Y Q+G EALE
Sbjct: 218 DDTVASALVSMY---GRFQMLESAKSVFFHRRVPRSSVELWNSMISAYVQSGHHREALEL 274
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F K+E GV D VT+V +L S LD
Sbjct: 275 FEKMELEGVAPDVVTIVEILGVCSVLRKLD 304
Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLS 59
Y+Q G + AL F +E GV + +T+ V+TA + G I A+ L + L+
Sbjct: 465 YTQHGCCDTALVVFHGMELEGVRANVITLTNVVTACTVTGDAAKGKSIHARVLSMGLEHH 524
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S S+ + Y G + A ++ V+ A++SG++Q G+ E +E ++
Sbjct: 525 SAVGSALVAMYGKFGMLDRAMSCFNDISAKNTVAWNALMSGFAQQGQSVETVELSRAMQL 584
Query: 111 LGVHTDEVTMVVVLAASSGPGALD 134
G+ +D + +VVL A S G ++
Sbjct: 585 QGMESDSASYLVVLFACSHGGLVE 608
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 14/141 (9%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
++ ++Q G +A+ F + GV D V + A S G + + L + SS+
Sbjct: 58 MTAFAQNGDPRQAIHLFQAMCLDGVELDRVAFATAVGACSSLGDLHIGRSLHSTIATSSF 117
Query: 62 SLS-----SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
S + YA +G LA + V+ A+I+ YSQ EAL +
Sbjct: 118 QSDAVLRVSLINMYAKAGEFALAEELFQRLELKSAVAYTALIAAYSQFKMGREALGLYRA 177
Query: 108 LESLGVHTDEVTMVVVLAASS 128
+ GV D+V M+ L A +
Sbjct: 178 MHLEGVAPDKVAMLSALGACA 198
>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 708
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+GY + + E L F ++ V +E T ++ A + G W ++
Sbjct: 225 MIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSG 284
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++LSS ++S Y G I AR D V AMI GY+ G NEAL F
Sbjct: 285 IELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQ 344
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
K+ +G+ + VT+ VL+ G L+ G+S + + A++ MYAK
Sbjct: 345 KMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTNVANALVHMYAK 401
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MI GY+ G NEAL F K+ +G+ + VT+ VL+ G L + L I++
Sbjct: 326 MIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVG 385
Query: 58 LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ ++++ YA + R A+ D V+ ++ISG+SQ G +EAL F +
Sbjct: 386 IWDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHR 445
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG--------------KSNIFLTTAIIEMYAK 152
+ + V + VT+ + +A + G+L G S++ + TA+++ YAK
Sbjct: 446 MNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAK 504
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG+SQ G +EAL F ++ + V + VT+ + +A + G+ + L ++L
Sbjct: 426 IISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLG 485
Query: 58 -LSSYSLSSKTSR---YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L+S S+ T+ YA G AR + ++ AMI GY + G +LE
Sbjct: 486 FLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLEL 545
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +E T VL+A S G ++ GK
Sbjct: 546 FEEMLKKQQKPNESTFTSVLSACSHTGMVNEGK 578
>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGYS+ + NEA++ F ++ S+ V DE MV +++A S G LAK + Q
Sbjct: 270 LISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTS 329
Query: 56 LDL-SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+D ++ L++ +A G + A RD + C ++I G S GR EA+E F
Sbjct: 330 IDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCCSLIQGLSIHGRGVEAVELF 389
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D V V+L A S G ++ G
Sbjct: 390 NRMLDEGLIPDTVAFTVILTACSRGGLIEDG 420
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 25/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+ G A F ++ + + + + A GA + E+ +E ++ S
Sbjct: 177 MVAGYASVGDLENAKRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEM-VERNVVS 235
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+++ YA G + AR D V+ A+ISGYS+ + NEA++ F ++ S+
Sbjct: 236 FTV--MIDGYAKVGDMASARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSM 293
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
V DE MV +++A S G D K + A+I+M+AK
Sbjct: 294 NVKPDEFIMVSLMSACSQLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAK 347
>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
mitochondrial-like [Glycine max]
Length = 635
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MI+GY + GR + L F + GV + +++ VL S A L K+ L +
Sbjct: 234 MIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCP 293
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LSS + +S S Y+ G ++ A +D V AMISGY+Q G +AL F
Sbjct: 294 LSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFD 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ D +T V VL A + G +D G
Sbjct: 354 EMKKEGLKPDWITFVAVLLACNHAGLVDLG 383
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 64/164 (39%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY G + A+E F V +T ++T G LA+ L E+ +
Sbjct: 172 MVSGYVACGDLDAAVECFYAAPMRSV----ITWTAMITGYMKFGRVELAERLFQEMSM-- 225
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R V+ AMI+GY + GR + L F + GV + +++
Sbjct: 226 -------------------RTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSL 266
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL S AL GK S+ T+++ MY+K
Sbjct: 267 TSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSK 310
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 75/160 (46%), Gaps = 29/160 (18%)
Query: 22 ESLGVHTDEVTM---VVVLTASSGP-GAWILAKE----LQIELDLSSYSLSSKTSRYAHS 73
E + +H +V + V V+ A G G W L E Q +D YS ++ + Y S
Sbjct: 135 EQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGS 194
Query: 74 GRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124
G + LA RD VS +I+GY Q G F EAL+ F K+ +G +E T+V L
Sbjct: 195 GNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSAL 254
Query: 125 AASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
AA S ALD G K N L +II+MYAK
Sbjct: 255 AACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAK 294
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GY Q G F EAL+ F K+ +G +E T+V L A S G WI A + E
Sbjct: 218 IIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGE 277
Query: 56 LDLSSYSLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ L+S YA G I ++ + AMI G++ G NEA+ F
Sbjct: 278 IKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGMPNEAINVF 337
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ + ++VT + +L A S ++ GK
Sbjct: 338 EQMKVEKISPNKVTFIALLNACSHGYMVEEGK 369
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWI-------- 47
MI+ + Q G EALE F ++E+ V + +TMV VL+A + G W+
Sbjct: 208 MITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNR 267
Query: 48 LAKELQIE---LDLSSYSLSSKTSR--------------------YAHSGRIRLAR---- 80
+ + L + LD+ + S + ++ YA G A+
Sbjct: 268 IGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFD 327
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
D + A+IS Y Q G+ EALE F +L+ S DEVT+V L+A + GA+D
Sbjct: 328 AMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMD 387
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G K N LTT++I+MY K
Sbjct: 388 LGGWIHVYIKKQGMKLNCHLTTSLIDMYCK 417
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ EALE F +L+ S DEVT+V L+A + GA WI +
Sbjct: 340 LISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQ 399
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+ + +S Y G ++ A +D AMI+G + G +A+ F
Sbjct: 400 GMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALF 459
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ V + VT +L A S G ++ G++
Sbjct: 460 SKMQEDKVKPNAVTFTNILCACSHVGLVEEGRT 492
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+ L+S YA G + L RD VS +MI+ + Q G EALE F ++E+
Sbjct: 172 FILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQ 231
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V + +TMV VL+A + +FG+ ++ L+ A+++MY K
Sbjct: 232 NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTK 284
>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49710-like [Cucumis sativus]
Length = 720
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRF-NEALEPFGKLESLGVHTDEVTMVVVLTASSG---PGAWILAKELQIEL 56
MISGYS +EALE F +L+ +G D+ ++V V++A S P L ++L
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
D+ S +S + Y+ G +R A+ + VS +MI+GY+Q G ++L
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHL 432
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +G +T + VLAA + G ++ GK
Sbjct: 433 FQRMLEMGFTPTNITFISVLAACAHTGRVEDGK 465
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y Q ++ALE + ++ G+ D T+ VLTA + + + +L S
Sbjct: 211 MVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG 270
Query: 61 YSLSSKT-----SRYAHSGRIRL----------ARDPVSCKAMISGYSQAGRF-NEALEP 104
Y +S Y+ G L D V MISGYS +EALE
Sbjct: 271 YHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALEC 330
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGA-------------LDFGKSNIFLTTAIIEMYA 151
F +L+ +G D+ ++V V++A S + LD + I + A+I MY+
Sbjct: 331 FRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYS 390
Query: 152 K 152
K
Sbjct: 391 K 391
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+QA NEA++ F +++ V DE+ ++ VL+A + GA L + + ++
Sbjct: 215 MISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHK 274
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S +S YA SG IR A + ++ MI+G + G EAL F
Sbjct: 275 LSKIVPLYNSLIDMYAKSGNIRKALELFENMKHKTIITWTTMIAGLALHGLGKEALRVFS 334
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFGK 137
+E V +EVT + +L+A S G ++ G+
Sbjct: 335 CMEKEDRVKPNEVTFIAILSACSHVGLVELGR 366
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D S AMISGY+QA NEA++ F +++ V DE+ ++ VL+A + GAL G+
Sbjct: 207 KDVFSWTAMISGYTQAHNPNEAIKLFRRMQLENVKPDEIAILAVLSACADLGALHLGEWI 266
Query: 138 ---------SNIF-LTTAIIEMYAK 152
S I L ++I+MYAK
Sbjct: 267 HNYIEKHKLSKIVPLYNSLIDMYAK 291
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GY Q G +AL F + L + EVT VL AS+ PG I + ++
Sbjct: 379 IIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTM 438
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S +S YA GRI AR D VS A+I GYS G EAL F
Sbjct: 439 YNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFD 498
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ +++T V VL+A S G LD G+++
Sbjct: 499 MMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHF 532
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
MIS Y+Q+ + EALE F ++ +S V + T VL A + G I + L++
Sbjct: 277 MISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKV 336
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD + + ++ YA G I + ++ V+ +I GY Q G +AL F
Sbjct: 337 GLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLF 396
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT------------TAIIEMYAK 152
+ L + EVT VL AS+ AL+ G+ LT ++I+MYAK
Sbjct: 397 SNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAK 455
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
M++ Y++ ++L F ++ +G + T+ L + +G A+ + K L++
Sbjct: 176 MVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVC 235
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D Y + Y SG I A+ D + MIS Y+Q+ + EALE F
Sbjct: 236 YDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFC 295
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ +S V + T VL A + L+ G SN+F++ A++++YAK
Sbjct: 296 RMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAK 354
>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Brachypodium distachyon]
Length = 613
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 21/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G+F +A++ F ++ GV D+ T+ V+++ GA L + + D+
Sbjct: 302 MISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQMGALDLGRYVHAYCDVHG 361
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S K S Y+ G I+ A RD S MI G++ G EAL+ F
Sbjct: 362 LGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVMIMGFAVNGLSGEALDLFA 421
Query: 107 KLESLG-VHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
++E G V +E+T + VL + S G ++ G S ++ IE Y M
Sbjct: 422 QMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVYGIAPRIEHYGCM 475
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 36/164 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG+++ G ++A F + V T V M+ V+ A G L ++ + D
Sbjct: 239 MISGFAKTGSVDDARSVFDGMRQRDVATWNV-MIGVMYAKCG-----LVEDARKVFDAMP 292
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R+ V +MISGY+Q G+F +A++ F ++ GV D+ T+
Sbjct: 293 ------------------ERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATI 334
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V+++ GALD G+ I + ++I+MY+K
Sbjct: 335 ATVVSSCGQMGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSK 378
>gi|302807243|ref|XP_002985334.1| hypothetical protein SELMODRAFT_21174 [Selaginella moellendorffii]
gi|300146797|gb|EFJ13464.1| hypothetical protein SELMODRAFT_21174 [Selaginella moellendorffii]
Length = 459
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIE---- 55
M++ + +G EA+ F +++ G+ ++E+T V L A PG+ L K++
Sbjct: 142 MVAALAGSGHGGEAILLFRRMDLEGIASNEITFVAALVACCDCPGSLALGKQIHERIIAG 201
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + + +S + Y SG + +A R S +M++ Y+Q G + AL+
Sbjct: 202 GLGSNVFLANSLVTMYGRSGEVAVAEAVFRSIRRRSLTSWNSMLAAYTQNGHSSVALDVH 261
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ GV +DE T V +L A + G L G+ +N F+ TA+++MY K
Sbjct: 262 VRMDHEGVASDEFTFVTLLDACAMAGTLQLGRQIHDRTAAMGLMANGFVATALLDMYGK 320
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
M++ Y+Q G + AL+ +++ GV +DE T V +L A + G L +++ +
Sbjct: 244 MLAAYTQNGHSSVALDVHVRMDHEGVASDEFTFVTLLDACAMAGTLQLGRQIHDRTAAMG 303
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + + ++ Y G + AR V+ AM++ Y+Q GR EALE +G
Sbjct: 304 LMANGFVATALLDMYGKRGSLGEARAVFDRHCTGSVVAWTAMVASYAQHGRSAEALELYG 363
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ + VT V +L+A S G +D G
Sbjct: 364 CMALEGLAPNSVTFVNILSACSYYGMVDQG 393
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Q G AL +++ GV DE+T +L A SG +E+ L
Sbjct: 41 MIVASVQNGDGVLALRLLREMDCEGVAPDEMTFSSILGALSGKRDLRQGREIHARLRSGG 100
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y+ G I AR D VS +M++ + +G EA+ F
Sbjct: 101 HESNLVVATALINMYSSCGSIAEAREVFSRTNSRDVVSMSSMVAALAGSGHGGEAILLFR 160
Query: 107 KLESLGVHTDEVTMVVVL-AASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ ++E+T V L A PG+L GK SN+FL +++ MY +
Sbjct: 161 RMDLEGIASNEITFVAALVACCDCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGR 219
>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
Length = 723
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GYS+AGR +A+ F + S GV DEV ++ L+A S + L + +
Sbjct: 206 LIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLLHLLVGKKR 265
Query: 61 YSLSSK-----TSRYAHSGRIRLA------------------------------------ 79
++ K YA G I A
Sbjct: 266 IQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVIIDGYCKLGHVDIARSLF 325
Query: 80 -----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
RD ++ +MI+GY +GR +AL+ F +L G+ D T+V +L A + GAL
Sbjct: 326 DQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALP 385
Query: 135 FGKS------------NIFLTTAIIEMYAK 152
G++ +++L TA+++MY K
Sbjct: 386 QGRALHASIEQRIVEEDVYLVTALVDMYMK 415
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 18/155 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+GY +GR +AL+ F +L G+ D T+V +LTA + GA + L
Sbjct: 339 MITGYIHSGRLRDALQLFMQLRRHGMRADNFTVVSLLTACASLGALPQGRALHASIEQRI 398
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+E D+ Y +++ Y GR+ A RD + AMI+G + G +ALE
Sbjct: 399 VEEDV--YLVTALVDMYMKCGRVDEATAVFHRMGERDVHTWSAMIAGLAFNGMGMDALES 456
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
F +++ G VT + VL A S L+ G+ +
Sbjct: 457 FCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGRQH 491
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF---- 135
R+ VS ++I+GYS+AGR +A+ F + S GV DEV ++ L+A S L+F
Sbjct: 198 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLKNLEFGRLL 257
Query: 136 ----GKSNIFLT----TAIIEMYAK 152
GK I +T +I+MYAK
Sbjct: 258 HLLVGKKRIQMTDKLVVTLIDMYAK 282
>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
mitochondrial [Vitis vinifera]
gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GY+ + ++A+ F K+ G D T++ +L++ P G I A +Q+
Sbjct: 229 MIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVG 288
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
D +++ S Y+ G I L + VS AMI+GY++ G +EA+ F
Sbjct: 289 CDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFS 348
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E++G D VT++ +++ GAL+ G K N+ + A+I++YAK
Sbjct: 349 AMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAK 406
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY++ G +EA+ F +E++G D VT++ +++ GA WI
Sbjct: 330 MIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANG 389
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFG 106
L + ++ YA G + AR+ P VS +I+G + G F EAL F
Sbjct: 390 LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFF 449
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEM 149
++ LG+ + +T + VL A + G L+ G L T + ++
Sbjct: 450 QMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKI 492
>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
Length = 629
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q G + A+ F ++ + G E T V VL ASS GA + K+ +++
Sbjct: 186 MITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLG 245
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y S+ YA G I A+ D V AM+SG+ Q G EAL +
Sbjct: 246 FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYA 305
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+++ G+ + T+ L A +G AL+ GK L T I++
Sbjct: 306 RMDKEGIIPSKSTIASGLRACAGIAALEPGKQ---LHTQIVK 344
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+SG+ Q G EAL + +++ G+ + T+ L A +G PG + + ++
Sbjct: 287 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 346
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L + S+ ++ Y+ G + RD ++ ++ISG+SQ G N AL+ F
Sbjct: 347 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 406
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
+++ G D +T + +L A S G +D G L T
Sbjct: 407 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMT 444
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IE- 55
M++GY+ EA + F LE E VL+A S P ++ +++ ++
Sbjct: 84 MVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD 143
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
LD S +S + YA +G + A R+ ++ AMI+GY+Q G + A+
Sbjct: 144 GLLDFVSVE-NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSM 202
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ + G E T V VL ASS GAL GK I++ +A+++MYAK
Sbjct: 203 FSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK 262
>gi|414872719|tpg|DAA51276.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 601
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ----IEL 56
+++GY++ FNE ++ F + + V+ D+VT V +++A++G G+ AK + E
Sbjct: 327 LLAGYARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGKGSLNHAKSVHGWVVKEF 386
Query: 57 DLSSYSLSSK-TSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
D L+S Y G ++ L +D AMISG + G EALE F
Sbjct: 387 DHQDAFLASALVDMYCKCGNVKTAYYVFEKALDKDVTLWTAMISGLAFNGHGTEALELFC 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+++ V + VT++ VL+A S G LD G
Sbjct: 447 KMQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 65/214 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------------------- 40
M+SGY G +AL F + S G+ D+ T V +LT
Sbjct: 193 MLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRM 252
Query: 41 -SGPGAWILAKELQIELDL--------------------SSYSLSSKTSRYAHSGRIRLA 79
+G IL L LD+ + S ++ S + ++G + LA
Sbjct: 253 DAGDHGLILVNAL---LDMYAKCGRMNAAKTIFGETGEKDAISWNTMVSGFVNAGMLDLA 309
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
RD +S A+++GY++ FNE ++ F + + V+ D+VT V +++A++G
Sbjct: 310 SRFFSEAPSRDLISWNALLAGYARYKSFNEVMKLFHDMVASCVNLDKVTAVTLISAATGK 369
Query: 131 GALDFGKS------------NIFLTTAIIEMYAK 152
G+L+ KS + FL +A+++MY K
Sbjct: 370 GSLNHAKSVHGWVVKEFDHQDAFLASALVDMYCK 403
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS------- 127
R L D VSC M+SGY G +AL F + S G+ D+ T V +L
Sbjct: 180 RSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNEL 239
Query: 128 ---SGPGA----LDFGKSNIFLTTAIIEMYAK 152
S G +D G + L A+++MYAK
Sbjct: 240 IGRSVHGVIVRRMDAGDHGLILVNALLDMYAK 271
>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 1131
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISG+++ G EA+ F +L+ G+ ++ VL+A + G+ + A+ ++
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEG 339
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y S+ + YA ++ A R+ V AM+ G++Q G E +E F
Sbjct: 340 LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G DE T + +A + LDFG SN+F+ A+++MYAK
Sbjct: 400 YMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAK 457
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+ISGY+Q +AL+ + + S + D+ T VL A +G + +E+
Sbjct: 685 LISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTG 744
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPV-SCKAMISGYSQAGRFNEALEPF 105
++ + SS YA G ++ + R+ V S +MI G ++ G EALE F
Sbjct: 745 FNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIF 804
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + DEVT + VL+A S G + G+
Sbjct: 805 KQMEQQSIIPDEVTFLGVLSACSHAGRVSEGR 836
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
++S Y G F ++ F + + GV +E T +VL+A SG G + ++
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ YA +R AR D VS +I+GY + G EA++ F
Sbjct: 173 FGFRSFCQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFD 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
K++ +G D++ +V V+ A G L
Sbjct: 233 KMQRVGHVPDQIALVTVINAYVALGRL 259
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G++Q G E +E F ++ G DE T + +A + +L + +
Sbjct: 381 MLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNK 440
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA SG ++ AR D VS A+I GY Q +EA F
Sbjct: 441 FTSNLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFR 500
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT------------TAIIEMYAK 152
++ S GV DEV++ +++A + G+ L +++I+MY K
Sbjct: 501 RMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY+ + EA+ F +++ +G+ EVT +L G L +++ ++
Sbjct: 583 LIAGYTMS-HLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641
Query: 57 --------DLSSYSLSSKTSRYAHS----GRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+S + + R+A S ++ + V A+ISGY+Q +AL+
Sbjct: 642 FLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQF 701
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIFLT---------TAIIEMYAK 152
+ + S + D+ T VL A +G +L G+ S IF T +++I+MYAK
Sbjct: 702 YQHMRSDNILPDQATFASVLRACAGMSSLQTGQEVHSLIFHTGFNMDEITCSSLIDMYAK 761
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY + G EA++ F K++ +G D++ +V V+ A G A++L ++
Sbjct: 214 LIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALVTVINAYVALGRLADARKLFTQIP--- 270
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ V+ MISG+++ G EA+ F +L+ G+ ++
Sbjct: 271 ------------------NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSL 312
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + L++G N+++ +A++ MYAK
Sbjct: 313 GSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAK 356
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY Q+ R+ AL+ F +L G + DEVT+V L+ G L K++ S
Sbjct: 201 MISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGS 260
Query: 60 SYSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ L SS Y+ G+I AR + V +MI+GY+Q+ F EA+E F
Sbjct: 261 GFVLDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELF 320
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFLTTAIIEM 149
+++ G D T+ VL+A GAL G+ +++ IEM
Sbjct: 321 REMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEM 365
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI+GY+Q+ F EA+E F +++ G D T+ VL+A GA WI +
Sbjct: 303 MIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNS 362
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
IE+DL++ ++ Y+ G I+ A D S A+ISG + G ++AL
Sbjct: 363 IEMDLNAR--NALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHL 420
Query: 105 FGKLESLG-VHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
F ++E + + +E+T + VL A + G +D G + I+ T IE Y M
Sbjct: 421 FSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCM 476
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 13/88 (14%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFG 136
L RD VS +MISGY Q+ R+ AL+ F +L G + DEVT+V L+ G LD G
Sbjct: 191 LVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLG 250
Query: 137 KS------------NIFLTTAIIEMYAK 152
K ++F+ +++I+MY+K
Sbjct: 251 KKIHGLFTGSGFVLDVFVGSSLIDMYSK 278
>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
Length = 605
Score = 61.6 bits (148), Expect = 9e-08, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY +A RF +ALE F ++ + GV + + A +G GA +E+ ++ S
Sbjct: 202 MMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSG 261
Query: 61 YSLSSKTSR-----YAHSGRIRLARD-----PVSCKA------MISGYSQAGRFNEALEP 104
+ K + Y G + A P++ K MI G++ GR +AL+
Sbjct: 262 IQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKL 321
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
FG++E GV D+VT+V VL A + G L G+
Sbjct: 322 FGRMEREGVAPDDVTLVNVLTACAHAGMLSEGR 354
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AM+SGY +A RF +ALE F ++ + GV + + A +G GAL G+
Sbjct: 194 RNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV 253
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 254 HRWVEQSGIQMDEKLATAVVDMYCK 278
>gi|449447569|ref|XP_004141540.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
gi|449481506|ref|XP_004156203.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g71490-like [Cucumis sativus]
Length = 712
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 27/176 (15%)
Query: 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---------- 53
G + G F +AL+ ++ + G+H D+V M++ L A S GA L KE+
Sbjct: 290 GCLRVGNFTQALKLLSQMRNFGIHLDDVAMIIGLGACSHIGAIRLGKEIHGFTIRHYHHM 349
Query: 54 ---IELDLSSYSLSSKTSRYAHS-GRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
++ L + K R+A+ R+ + ++ +M+SG + GR EAL F +L
Sbjct: 350 LSTVQNALVTMYARCKDIRHAYMLFRLNDDKSRITWNSMLSGLTHLGRVEEALCLFRELL 409
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
GV D VT +L + L G + ++ L A+++MYA+
Sbjct: 410 LFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHRDFRDHLLLWNALVDMYAR 465
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 15/149 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+SG + GR EAL F +L GV D VT +L + +E +
Sbjct: 388 MLSGLTHLGRVEEALCLFRELLLFGVEPDYVTFASILPLCARVADLQHGREFHCYITKHR 447
Query: 57 DLSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
D + L ++ YA +G++ A+ D V+ ++I+GY G +A+ F
Sbjct: 448 DFRDHLLLWNALVDMYARAGKVSEAKRIFYSLSKKDEVTYTSLIAGYGMQGEGGKAVRLF 507
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALD 134
+++ + D +TM+ VL+A S G ++
Sbjct: 508 EEMKRFQIKPDHITMIAVLSACSHSGLVN 536
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 21/137 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y + G + A F + + D V+ +++ S G W A EL
Sbjct: 221 LISMYGRCGEVDTARNLFDNM----LERDAVSWNSMISCYSSRGMWREAFEL-------F 269
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S+ SK L + V+ + G + G F +AL+ ++ + G+H D+V M
Sbjct: 270 ESMQSKC----------LEINVVTWNIIAGGCLRVGNFTQALKLLSQMRNFGIHLDDVAM 319
Query: 121 VVVLAASSGPGALDFGK 137
++ L A S GA+ GK
Sbjct: 320 IIGLGACSHIGAIRLGK 336
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY QAG EAL+ F ++++ V D V++ L+A S GA WI + +
Sbjct: 214 MISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTR 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S YA G + A + A+ISGY+ G EA+ F
Sbjct: 274 TRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFL 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++++GV + +T VL A S G ++ GKS
Sbjct: 334 EMQNMGVKPNAITFTAVLTACSYTGLVEEGKS 365
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-- 138
+ +S MISGY QAG EAL+ F ++++ V D V++ L+A S GAL+ GK
Sbjct: 207 NAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIH 266
Query: 139 ----------NIFLTTAIIEMYAK 152
+ L +I+MYAK
Sbjct: 267 SYANKTRTRIDSVLCCVLIDMYAK 290
>gi|125595888|gb|EAZ35668.1| hypothetical protein OsJ_19954 [Oryza sativa Japonica Group]
Length = 510
Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
M+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA L ++++
Sbjct: 190 MVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGK 249
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
L + Y ++ Y+ G IR A +D S +MI ++ G + EAL
Sbjct: 250 GLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALAL 309
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F KL GV D +T V V+ A + G ++ GK
Sbjct: 310 FYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
R+ VS AM+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA++ G+
Sbjct: 182 RNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRK 241
Query: 139 ------------NIFLTTAIIEMYAK 152
N+++ A++EMY+K
Sbjct: 242 VEEYARGKGLLRNVYVANALLEMYSK 267
>gi|5059312|gb|AAD38962.1|AF149040_1 hypothetical protein-1 [Prunus dulcis]
Length = 205
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY+ G NEAL F +E+ G D VT++ +++ S GA WI
Sbjct: 12 MISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCSQTGALELGKWIHNYAFSNG 71
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L S ++ YA G + AR+ VS MI+G++ G + EAL+ F
Sbjct: 72 LRDSIVVCNALIDMYAKCGNVNSARELSYALPVRTVVSWTTMIAGFALNGNYEEALDLFC 131
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ L + + +T + +L A + G L+ G
Sbjct: 132 LMVDLDLKPNHLTFLAILQACTHAGLLEKG 161
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R VS AMISGY+ G NEAL F +E+ G D VT++ +++ S GAL+ GK
Sbjct: 4 RTCVSWTAMISGYADKGDLNEALRLFHAMEAAGEKPDLVTVLSLVSGCSQTGALELGKWI 63
Query: 138 ----------SNIFLTTAIIEMYAK 152
+I + A+I+MYAK
Sbjct: 64 HNYAFSNGLRDSIVVCNALIDMYAK 88
>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
Length = 735
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q G + A+ F ++ + G E T V VL ASS GA + K+ +++
Sbjct: 292 MITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLG 351
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y S+ YA G I A+ D V AM+SG+ Q G EAL +
Sbjct: 352 FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYA 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+++ G+ + T+ L A +G AL+ GK L T I++
Sbjct: 412 RMDKEGIIPSKSTIASGLRACAGIAALEPGKQ---LHTQIVK 450
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IE- 55
M++GY+ EA + F LE E VL+A S P ++ +++ ++
Sbjct: 190 MVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD 249
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
LD S +S + YA +G + A R+ ++ AMI+GY+Q G + A+
Sbjct: 250 GLLDFVSVE-NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSM 308
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ + G E T V VL ASS GAL GK I++ +A+++MYAK
Sbjct: 309 FSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK 368
Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+SG+ Q G EAL + +++ G+ + T+ L A +G PG + + ++
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 452
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L + S+ ++ Y+ G + R+ RD ++ ++ISG+SQ G N AL+ F
Sbjct: 453 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 512
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
+++ G D +T + +L A S G +D G L T
Sbjct: 513 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMT 550
>gi|50253500|gb|AAT71952.1| At3g21470 [Arabidopsis thaliana]
gi|53850541|gb|AAU95447.1| At3g21470 [Arabidopsis thaliana]
Length = 442
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+I+GY+Q G ++A++ F ++ G D VT+ +L+A + G + +E+
Sbjct: 164 LIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRG 223
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ YA G + A R C +MIS + G+ EALE F
Sbjct: 224 IELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFS 283
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+ESL + DE+T + VL A G L
Sbjct: 284 TMESLDLKPDEITFIAVLTACVHGGFL 310
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ARD V +I+GY+Q G ++A++ F ++ G D VT+ +L+A + G LD G+
Sbjct: 154 FARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGR 213
Query: 138 S------------NIFLTTAIIEMYAK 152
N F++ A+I+MYAK
Sbjct: 214 EVHSLINHRGIELNQFVSNALIDMYAK 240
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAK-ELQI 54
MI GY+Q GR NEAL F + GV DEV +++ L+A ++ G W+ + +
Sbjct: 233 MIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR 292
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L++ ++ Y G + A +D V AMI+GY+ G +ALE F
Sbjct: 293 RVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMF 352
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+L S G+ ++T + +L A S G +D G
Sbjct: 353 SQLRSQGLWPTDITFIGLLNACSHSGLVDEG 383
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++D + AMI GY+Q GR NEAL F + GV DEV +++ L+A + G + G+
Sbjct: 224 SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRW 283
Query: 139 -------------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 284 LHSYVKNSRRVQLNARVGTALIDMYCK 310
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAK-ELQI 54
MI GY+Q GR NEAL F + GV DEV +++ L+A ++ G W+ + +
Sbjct: 232 MIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSR 291
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L++ ++ Y G + A +D V AMI+GY+ G +ALE F
Sbjct: 292 RVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKALEMF 351
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+L S G+ ++T + +L A S G +D G
Sbjct: 352 SQLRSQGLWPTDITFIGLLNACSHSGLVDEG 382
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++D + AMI GY+Q GR NEAL F + GV DEV +++ L+A + G + G+
Sbjct: 223 SKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRW 282
Query: 139 -------------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 283 LHSYVKNSRRVQLNARVGTALIDMYCK 309
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 29/164 (17%)
Query: 18 FGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIELDLSSYSLSSKTSRYAH 72
F ++ GV D T +L + + P G + A+ L+ L + + +S S Y+
Sbjct: 52 FVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSS 111
Query: 73 SGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT---DEVTM 120
SG + +AR+ +S MI+GY + G++ EAL F +++ LGV+ +E TM
Sbjct: 112 SGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTM 171
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VLAA GAL+ GK ++ L TA+I+MYAK
Sbjct: 172 SGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAK 215
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT---DEVTMVVVLTASSGPGAWILAKELQIELD 57
MI+GY + G++ EAL F +++ LGV+ +E TM VL A GA K +D
Sbjct: 136 MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYID 195
Query: 58 LSSYSL-----SSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ YA G + A +D ++ AMISG + G E +
Sbjct: 196 KCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECV 255
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F K+ + GV + VT + V A G + GK
Sbjct: 256 GLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 291
>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
Length = 674
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKELQIE--- 55
MI+ Y+Q G EA+ + K+ ++G + + V + VL A + GA K + +
Sbjct: 271 MIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVR 330
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L+ + Y +S Y+ GR+ +A ++ +S AMI+GY GR EALE
Sbjct: 331 MGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI 390
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G+ + +T + VLAA S G LD G+
Sbjct: 391 FTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 423
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASSGPGALDF 135
+ RD VS +MI+ Y+Q G EA+ + K+ ++ G+ + V + VL A + GA+
Sbjct: 261 MERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQT 320
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK N+++ T+I++MY+K
Sbjct: 321 GKRIHNQVVRMGLEENVYVGTSIVDMYSK 349
>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
Length = 605
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY +A RF +ALE F ++ + GV + + A +G GA +E+ ++ S
Sbjct: 202 MMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSG 261
Query: 61 YSLSSKTSR-----YAHSGRIRLARD-----PVSCKA------MISGYSQAGRFNEALEP 104
+ K + Y G + A P++ K MI G++ GR +AL+
Sbjct: 262 IQMDEKLATAVVDMYCKCGCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKL 321
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
FG++E GV D+VT+V VL A + G L G+
Sbjct: 322 FGRMEREGVAPDDVTLVNVLTACAHAGMLSEGR 354
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AM+SGY +A RF +ALE F ++ + GV + + A +G GAL G+
Sbjct: 194 RNLVSWNAMMSGYVKACRFLDALEVFDEMRARGVDGNVFVAATAVVACTGAGALARGREV 253
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 254 HRWVEQSGIQMDEKLATAVVDMYCK 278
>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
Length = 735
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 17/162 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q G + A+ F ++ + G E T V VL ASS GA + K+ +++
Sbjct: 292 MITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLG 351
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ Y S+ YA G I A+ D V AM+SG+ Q G EAL +
Sbjct: 352 FEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQNGEHEEALTLYA 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+++ G+ + T+ L A +G AL+ GK L T I++
Sbjct: 412 RMDKEGIIPSKSTIASGLRACAGIAALEPGKQ---LHTQIVK 450
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IE- 55
M++GY+ EA + F LE E VL+A S P ++ +++ ++
Sbjct: 190 MVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKD 249
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
LD S +S + YA +G + A R+ ++ AMI+GY+Q G + A+
Sbjct: 250 GLLDFVSVE-NSLVTMYAKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSM 308
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ + G E T V VL ASS GAL GK I++ +A+++MYAK
Sbjct: 309 FSQMHAAGFTPTEFTFVGVLNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAK 368
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+SG+ Q G EAL + +++ G+ + T+ L A +G PG + + ++
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 452
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L + S+ ++ Y+ G + R+ RD ++ ++ISG+SQ G N AL+ F
Sbjct: 453 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 512
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
+++ G D +T + +L A S G +D G L T
Sbjct: 513 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMT 550
>gi|168041820|ref|XP_001773388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675264|gb|EDQ61761.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 748
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY++ F +A+E + K+ GV +E+T +L A + P A +++ + +
Sbjct: 77 MIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALKWGRKIHDHIRHAG 136
Query: 61 YSLSSKTSR-----YAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + YA G + RL RD ++ MI Q GR +EA F
Sbjct: 137 FQSDLRLGNALIHMYARCGSMDDARLVFNGMVDRDIITWNVMIGRLVQHGRGHEAFSLFL 196
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G D T + +L A++ GAL + K S++ + TA++ MYA+
Sbjct: 197 QMQREGFVPDTTTYLSMLNANACTGALGWVKEVHSHALRAGLESDVRVGTALVHMYAR 254
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 26/150 (17%)
Query: 29 DEVTMVVVLTASSGPGAWILAKE-----LQIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80
D T V +L +LAK+ ++ E++ Y + S Y GR++ R
Sbjct: 4 DSYTYVDILQKVFKHKDLVLAKQVHECIIKSEMEQHPYVANKLMSIYIRCGRLQNTREVF 63
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
+ + MI GY++ F +A+E + K+ GV +E+T +L A + P AL
Sbjct: 64 DTLVEKNVFNWTIMIGGYAENNHFEDAIEVYNKMRQNGVQPNEITFFNILKACTSPMALK 123
Query: 135 FGK------------SNIFLTTAIIEMYAK 152
+G+ S++ L A+I MYA+
Sbjct: 124 WGRKIHDHIRHAGFQSDLRLGNALIHMYAR 153
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MI G +Q G EA F +++ G + T + +L + GA KE+ E
Sbjct: 381 MIGGLAQHGFGREAFSLFLQMQREGFVPNLTTYLSILNGKASTGALEWVKEVHTHAVNAE 440
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ YA G I AR D +S AMI G +Q G EA F
Sbjct: 441 LDSHLRVGNALIHMYAKCGSIENARLVFDRMEDRDIISWNAMIGGLAQNGHGREAFSHFL 500
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G D T+V +L A + ALD K S++ + +A++ YAK
Sbjct: 501 EMQREGFIPDAATLVSILNACASTRALDRVKEVHSHALEAGLESDLRVGSALVHTYAK 558
>gi|255542118|ref|XP_002512123.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549303|gb|EEF50792.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 456
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE---LQIELD 57
MI GY+Q+ +AL+ F + G+ ++VT+V L A + G L + L I+L
Sbjct: 176 MIVGYTQSNLSYDALKLFLDKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLG 235
Query: 58 LSSYSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ +L ++ YA R A +D VS ++ISG SQ G EAL+ F +
Sbjct: 236 FAEPTLMNALVHMYAKCHMNRDASYLFETASEKDVVSWNSIISGCSQMGSPYEALDLFQR 295
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
+ V D VT+V V +A + GAL G SN++++TA++ YAK
Sbjct: 296 MRKESVSPDAVTLVSVFSACASLGALQVGSSLHAYSVKEGLLSSNVYVSTALLTFYAK 353
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI GY Q E L F ++ + ++ T+ +++TA + GA K ++
Sbjct: 75 MIVGYVQNDCPVEGLILFNRMREGLIEGNQFTLGILVTACTKLGALHQGKCFHGYAIKSG 134
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L+SY +++ Y G IR AR D VS AMI GY+Q+ +AL+ F
Sbjct: 135 VQLNSYLMTALLDMYVKCGVIRDARSVFDELSSIDLVSWTAMIVGYTQSNLSYDALKLFL 194
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+ G+ ++VT+V LAA + G L+ G+S L A++ MYAK
Sbjct: 195 DKKWAGILPNDVTIVSALAACARMGNLNLGRSIHGLAIKLGFAEPTLMNALVHMYAK 251
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 72/164 (43%), Gaps = 28/164 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG SQ G EAL+ F ++ V D VT+V V +A + GA LQ+ L +
Sbjct: 276 IISGCSQMGSPYEALDLFQRMRKESVSPDAVTLVSVFSACASLGA------LQVGSSLHA 329
Query: 61 YS-----LSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
YS LSS + YA G AR + V+ AMI GY G
Sbjct: 330 YSVKEGLLSSNVYVSTALLTFYAKCGDAGSARTIFDGMQEKNTVTWSAMIGGYGVQGDAG 389
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
+L F + + +EV +L+A S G + G N+F++
Sbjct: 390 GSLSIFNDMLRQELKPNEVIFTTILSACSHTGMVGEGW-NLFIS 432
>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 687
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKEL-----QI 54
MI+ + G +A + ++ L + DEVTMV ++ A + G K L ++
Sbjct: 183 MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKEL 242
Query: 55 ELDLSSYSLSSKTSRYAHS----------GRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
LD + ++ Y RIR +D +S +M+SG +++G F EAL
Sbjct: 243 GLDENLRVNNAILDMYCKCDDIESAQEVFNRIR-EKDVLSWTSMLSGLAKSGYFQEALAL 301
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F K++ + DE+T+V VL+A + GALD GK ++ L TA+++MYAK
Sbjct: 302 FQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAK 361
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 21/101 (20%)
Query: 71 AHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121
+HSG + AR DP C MI GY+++ EA+ + + GV D T
Sbjct: 56 SHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYP 115
Query: 122 VVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
VLAA + GA+ G+ S++F+ A+I+ Y
Sbjct: 116 FVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFY 156
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q R EALE F ++++ GV TDEVT+V V++A + GA A ++ + S
Sbjct: 243 MVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSG 302
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ +S YA G + A R+ S +MI G++ G A+E
Sbjct: 303 FGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMEL 362
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ + + VT + VL A S G ++ G+
Sbjct: 363 FDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQ 396
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 23/120 (19%)
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD S +S YA G + A +D V+ AM++GY+Q R EALE F
Sbjct: 202 LDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFE 261
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
++++ GV TDEVT+V V++A + GA + SN+ + +A+I+MYAK
Sbjct: 262 RMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAK 321
>gi|6983870|dbj|BAA90805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125553873|gb|EAY99478.1| hypothetical protein OsI_21446 [Oryza sativa Indica Group]
Length = 510
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
M+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA L ++++
Sbjct: 190 MVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGK 249
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
L + Y ++ Y+ G IR A +D S +MI ++ G + EAL
Sbjct: 250 GLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALAL 309
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F KL GV D +T V V+ A + G ++ GK
Sbjct: 310 FYKLRMAGVKPDGITFVGVILACTHGGLVNEGK 342
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
R+ VS AM+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA++ G+
Sbjct: 182 RNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRK 241
Query: 139 ------------NIFLTTAIIEMYAK 152
N+++ A++EMY+K
Sbjct: 242 VEEYARGKGLLRNVYVANALLEMYSK 267
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL-----AKELQIE 55
MI+GYSQ G+ AL+ FG+++ + + + T +VL A + +L A E+ I
Sbjct: 359 MIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALA--VLEQGNEAHEVVIR 416
Query: 56 LDLSSYSLSSKT--SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S L T YA G I AR D S AMI GY+ G E+LE
Sbjct: 417 SGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLEL 476
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
F +++ G+ D VT V VL+A G +D G+ + + T +E Y M
Sbjct: 477 FEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCM 531
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q G A+E F K+ + + + + S A+ K QI + +
Sbjct: 266 MMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAF---KLFQIMPERNV 322
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
S ++ S +A +G++ A + VS AMI+GYSQ G+ AL+ FG+++ +
Sbjct: 323 ISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMV 382
Query: 112 GVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + T +VL A + L+ G +S++ + ++ MYAK
Sbjct: 383 DMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAK 435
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 24/176 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVH----TDEVTMVVVLTASSGPGAWIL-AKELQIE 55
++ + GR EAL + G+ T + + L A S P A +L A +Q +
Sbjct: 35 LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94
Query: 56 LDLSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ SL +K S Y G + AR + VS AMI+ Y++ EAL F
Sbjct: 95 FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGAL-DFG--------KSNIFLTTAIIEMYAK 152
+++ +G+ + T +L A + L +F +SN+F+ +++MYAK
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAK 210
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 33/173 (19%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDL----SSYSL 63
EA+ + +E V +E+TMV VL A + G W+ + Q+ LD S++++
Sbjct: 189 EAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNV 248
Query: 64 ---SSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFGKLESL 111
++ YA G ++ ARD P V+ +MI Y+Q G+ NEAL+ F +
Sbjct: 249 ILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIA 308
Query: 112 GVHTDEVTMVVVLAASSGPGALDFG--------KSNIF----LTTAIIEMYAK 152
G D+ T + V+ A + GAL G K+N+ + TA+++MYAK
Sbjct: 309 GFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAK 361
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 19/158 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y+Q G+ NEAL+ F + G D+ T + V+ A + GA + + L +S
Sbjct: 285 MIGAYNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAY--VSK 342
Query: 61 YSLSSKTS-------RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+L+ T+ YA SG A +D + ++I G + G EAL
Sbjct: 343 TNLTDDTAIGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTF 402
Query: 105 FGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F K+ E + DE+T + VL+A S G ++ GK++
Sbjct: 403 FKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFI 440
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 79/187 (42%), Gaps = 37/187 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI GYS + +EAL + ++ G D T VL A S + L + +
Sbjct: 76 MIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVHNCIVKTG 135
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E+D+ Y+ ++ YA G + A + V+ ++I+G +EA+
Sbjct: 136 FEVDV--YAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRV 193
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------------NIFLTTA 145
+ +E V +E+TMV VL A + L+ G+ N+ L TA
Sbjct: 194 YKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATA 253
Query: 146 IIEMYAK 152
I++MYAK
Sbjct: 254 IVDMYAK 260
>gi|115463111|ref|NP_001055155.1| Os05g0307200 [Oryza sativa Japonica Group]
gi|113578706|dbj|BAF17069.1| Os05g0307200 [Oryza sativa Japonica Group]
Length = 767
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
G W+ +++ S S+ Y G I AR D V+ AMI+GY+Q
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFL 142
G NEA+ F + G+ D++T+ VL+A S GAL+ G SN+++
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYV 392
Query: 143 TTAIIEMYAK 152
TA+++MYAK
Sbjct: 393 GTALVDMYAK 402
>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g21470-like [Glycine max]
Length = 535
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI+GY Q G +AL F + + G DE T+V VL+A + G + K++ ++
Sbjct: 244 MIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKG 303
Query: 58 --LSSYSLSSKTSRYAHSGRIRLAR--------DPVSC-KAMISGYSQAGRFNEALEPFG 106
++ + LS YA G + AR + C AMISG++ G+ +E LE FG
Sbjct: 304 IVVNPFVLSGLVDMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFG 363
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++E + D +T + VL+A + G L T +E+ +KM
Sbjct: 364 RMEESNIRPDGITFLTVLSACAHRG----------LVTEALEVISKM 400
>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
Length = 741
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+G+ Q G EAL + +++ GV +T+ VL A + PG + A+ L+
Sbjct: 399 MITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRACACLAALEPGKQLHAQILKCG 458
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ ++ Y+ G + + RD +S ++ISG+SQ GR +AL+ F
Sbjct: 459 FGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIISWNSIISGFSQHGRGRDALDLFE 518
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ D +T + VL A S G +D G
Sbjct: 519 EMKLEGIAPDHITFINVLCACSHMGLVDRG 548
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+Q G + A F ++ S G E T V +L ASS GA ++ K+ +++
Sbjct: 297 MITGYAQNGEADCAATMFLQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLG 356
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD----------PVSCKAMISGYSQAGRFNEALEPF 105
+ Y S+ YA G A+D V AMI+G+ Q G EAL +
Sbjct: 357 FERQVYVKSALVDMYAKCGCTGDAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLY 416
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ GV +T+ VL A + AL+ GK
Sbjct: 417 SRMDKEGVMPSYLTVTSVLRACACLAALEPGK 448
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
M+SGY+ EA E F L+ + +E VL+A S P ++ +L ++
Sbjct: 195 MVSGYATGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKD 254
Query: 57 DLSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + +S + YA + + A R+ ++ AMI+GY+Q G + A F
Sbjct: 255 GLVGFVSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMF 314
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ S G E T V +L ASS GAL GK +++ +A+++MYAK
Sbjct: 315 LQMHSAGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFERQVYVKSALVDMYAK 373
>gi|218196522|gb|EEC78949.1| hypothetical protein OsI_19398 [Oryza sativa Indica Group]
Length = 746
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
G W+ +++ S S+ Y G I AR D V+ AMI+GY+Q
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFL 142
G NEA+ F + G+ D++T+ VL+A S GAL+ G SN+++
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYV 392
Query: 143 TTAIIEMYAK 152
TA+++MYAK
Sbjct: 393 GTALVDMYAK 402
>gi|255568940|ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535253|gb|EEF36930.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q F EAL F ++ + G+ +D + ++A +G A +++ + +S
Sbjct: 564 LIAGYTQHDLFTEALNLFDEMLNRGIQSDNIGFSSAISACAGIQALSQGQQIHAQSYISG 623
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ S YA GRI+ A +D +S A++SG++Q+G EAL+ F
Sbjct: 624 YSEDLSIGNALVSLYARCGRIQEANLAFEKIDAKDSISWNALMSGFAQSGYCEEALKIFA 683
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + T ++A++ + GK S I ++ A+I +YAK
Sbjct: 684 QMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTGFDSEIEVSNALITLYAK 741
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
M+ Y Q +++ F +++ G+ ++ T +L + GA L +++ +
Sbjct: 463 MLVAYGQLDNLSKSFCIFRQMQIEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTG 522
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + Y S YA G++ +AR D VS A+I+GY+Q F EAL F
Sbjct: 523 FEFNVYVCSVLIDMYAKLGKLDIARGILRRLNEEDVVSWTALIAGYTQHDLFTEALNLFD 582
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + G+ +D + ++A +G AL G+
Sbjct: 583 EMLNRGIQSDNIGFSSAISACAGIQALSQGQ 613
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
++SG++Q+G EAL+ F ++ + T ++A++ G I A ++
Sbjct: 665 LMSGFAQSGYCEEALKIFAQMTRANIKASLFTFGSAVSAAANMANIKQGKQIHAMIMKTG 724
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D ++ + YA G I A+ + +S AMI+GYSQ G EA+ F
Sbjct: 725 FDSEIEVSNALITLYAKCGCIDGAKREFFEIPEKNEISWNAMITGYSQHGCGIEAVNLFQ 784
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ +G + VT V V++A S G ++ G
Sbjct: 785 KMKQVGAKPNHVTFVGVISACSHVGLVNEG 814
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 12 NEALEPFGKLESLGVHTDEVTMVVVLTA-SSGPGAWILAKELQIE-----LDLSSYSLSS 65
N L F ++ V+ +EVT+ VL A SG A+ +++ L SS + +
Sbjct: 170 NRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRGLGTSSIACNP 229
Query: 66 KTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
YA +G IR AR D VS A+IS YSQ G EA+ F ++ G+
Sbjct: 230 LIDLYAKNGFIRSARKVFDELCMKDSVSWVAVISSYSQNGFGEEAIRLFCEMHISGLSPT 289
Query: 117 EVTMVVVLAASSGPGALDFG--------KSNIFLTT----AIIEMYAKM 153
VL+A + D G K FL T A++ +Y+++
Sbjct: 290 PYVFSSVLSACAKIELFDIGEQLHALVFKCGFFLETYVCNALVTLYSRL 338
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISG SQ G + ALE F K++ + D VT+ +L+A + + ++L
Sbjct: 362 LISGLSQQGCSDRALELFKKMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAG 421
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LD+ S L K S + + + V M+ Y Q +++ F
Sbjct: 422 MCLDIIIEGSLLDLYVKCSDITTAHKFFATTQTENVVLWNVMLVAYGQLDNLSKSFCIFR 481
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAKM 153
+++ G+ ++ T +L + GALD G+ N+++ + +I+MYAK+
Sbjct: 482 QMQIEGLIPNQFTYPSILRTCTSFGALDLGEQIHSQAIKTGFEFNVYVCSVLIDMYAKL 540
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS YSQ G EA+ F ++ G+ VL+A + + + ++L +
Sbjct: 261 VISSYSQNGFGEEAIRLFCEMHISGLSPTPYVFSSVLSACAKIELFDIGEQLHALVFKCG 320
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L +Y ++ + Y+ G A +D VS ++ISG SQ G + ALE F
Sbjct: 321 FFLETYVCNALVTLYSRLGNFISAQQVFSKIKCKDEVSYNSLISGLSQQGCSDRALELFK 380
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K++ + D VT+ +L+A + +L G+ +I + +++++Y K
Sbjct: 381 KMQLDHLKPDCVTVASLLSACASIKSLSKGEQLHSYAIKAGMCLDIIIEGSLLDLYVK 438
>gi|222631052|gb|EEE63184.1| hypothetical protein OsJ_17993 [Oryza sativa Japonica Group]
Length = 746
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 63/130 (48%), Gaps = 21/130 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
G W+ +++ S S+ Y G I AR D V+ AMI+GY+Q
Sbjct: 273 GRWVEEWSWSARMEMDSLVGSALLGMYEKCGEIAEARRVFDTIIDKDIVAWNAMITGYAQ 332
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFL 142
G NEA+ F + G+ D++T+ VL+A S GAL+ G SN+++
Sbjct: 333 NGMSNEAISLFHSMRIAGMRPDKITLAGVLSACSAVGALELGSELDGYASRRGLYSNVYV 392
Query: 143 TTAIIEMYAK 152
TA+++MYAK
Sbjct: 393 GTALVDMYAK 402
>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera]
Length = 684
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++Q RF E+LE F K+ +E + L+A +G + ++ + S
Sbjct: 118 MVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS S+ Y+ G + A R+ V+ ++I+ Y Q G +EALE F
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF-----LTTAIIEMYAK 152
++ G+ DEVT+ V++A + AL G K+N F L A+++MYAK
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EAL F L+ + T +L+A + +L ++ +
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQG 411
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
+ +S Y G I RD VS A+I GY+Q G E
Sbjct: 412 FEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAE 471
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
AL+ F K+ G D VTM+ VL A S G ++ G+ F
Sbjct: 472 ALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFF 512
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 68/218 (31%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+ Y Q G +EALE F ++ G+ DEVT+ V++A + A L + LQI
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA--LKEGLQIHARVVK 276
Query: 57 ------DL-------SSYSLSSKTSR----------------------YAHSGRIRLAR- 80
DL Y+ SK + YA + ++ AR
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 81 --------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132
+ VS A+I+GY+Q G EAL F L+ + T +L+A +
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLAD 396
Query: 133 LDFGK------------------SNIFLTTAIIEMYAK 152
L G+ S+IF+ ++I+MY K
Sbjct: 397 LLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMK 434
Score = 42.4 bits (98), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D S +M+SG++Q RF E+LE F K+ +E + L+A +G L+ G
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170
Query: 137 --------KSNIFLTTAIIEMYAK 152
+++++ +A+I+MY+K
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSK 194
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+Q G EAL+ F K+ G D VTM+ VL A S G L +E +
Sbjct: 459 IIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAG---LVEEGR------H 509
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y S + G I L +D +C M+ +AG NEA +E++ V+ D V
Sbjct: 510 YFFSME-----EHGLIPL-KDHYTC--MVDLLGRAGCLNEAK---NLIEAMPVNPDAVVW 558
Query: 121 VVVLAASSGPGALDFGK 137
+LAA G ++ GK
Sbjct: 559 GSLLAACKVHGNIEMGK 575
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I GY Q RF + L+ F +++++ V D VTM+ ++A+ W + L +D
Sbjct: 144 IICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHG 203
Query: 58 --LSSYSLSSKTSRYAHSGRIRLA------------------------------------ 79
+ Y ++ Y G I A
Sbjct: 204 VVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFN 263
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
RD +S +MI GYS A + EA++ F ++ V DE+T+ L+A + G+LD
Sbjct: 264 EMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDA 323
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G KS++F+ ++I+MY K
Sbjct: 324 GEAVHDYIRKHDIKSDVFVGNSLIDMYCK 352
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI G S++ R N+A+ + + G+ +T + + + + G + +++
Sbjct: 43 MIHGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLG 102
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ ++ Y G + +A RD VS ++I GY Q RF + L+ F
Sbjct: 103 FESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFR 162
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++++ V D VTM+ ++A+ + G +++L +I+MY +
Sbjct: 163 EMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGR 220
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MI GYS A + EA++ F ++ V DE+T+ L+A + G+ + + + D
Sbjct: 276 MIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHD 335
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S + +S Y G + A RD VS ++ISG + G AL F
Sbjct: 336 IKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFD 395
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ T V VL A + G +D G
Sbjct: 396 QMLKEGICPTHGTFVGVLLACAHVGLVDKG 425
>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYS G+ + + ++ LG D ++V V+++ S GA + I +
Sbjct: 382 MILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGA------INIGRSIHC 435
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
Y++ +S Y SG + L RD +S +IS Y Q+G E
Sbjct: 436 YAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAE 495
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIE 148
A+ F K+ V+ ++VT ++VL+A + +LD G +SNI + TA+I+
Sbjct: 496 AIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALID 555
Query: 149 MYAK 152
MYAK
Sbjct: 556 MYAK 559
Score = 42.7 bits (99), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q+G EA+ F K+ V+ ++VT ++VL+A + + +++ + +
Sbjct: 483 LISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENG 542
Query: 61 YSLSSKTSR------YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ S+ T R YA G + +R D + MIS Y G A+E F
Sbjct: 543 FE-SNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIF 601
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E + + T + +L+A + G + G+
Sbjct: 602 QLMEESNIKPNAQTFLSLLSACNHTGHVLEGR 633
>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 664
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
+I+G+SQ G + A+ + ++ G+ +E T+ VL+A S GA +IL
Sbjct: 264 LINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNG 323
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++++ + + S YA G + A +D +S AMI G++ GRF++A+
Sbjct: 324 IKLDRAIGT----SLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAI 379
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F ++ G DEV + VL A G +D G
Sbjct: 380 QCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLG 413
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
++ Y++ G+ N A + F + D + +L + + AK++Q+ L
Sbjct: 167 LVDMYAKTGQLNHAFQVFEET------PDRIKKESILLWNVLVNGYCRAKDMQMATTLFR 220
Query: 59 -----SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+S S S+ Y +G + A+ + VS +I+G+SQ G + A+
Sbjct: 221 SMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ ++ G+ +E T+ VL+A S GAL G K + + T++++MYAK
Sbjct: 281 YFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAK 340
>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 502
Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Y + +AL F + LG D T+ + AS G G L K L I+L
Sbjct: 79 LIASYVHNSFYFDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGDAYLGKRLHCWTIKLG 138
Query: 58 LSSYSLSSKT--SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y + T YA G + AR D VS +MISGY +AG + +AL+ F
Sbjct: 139 FVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGVYMDALDCFK 198
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ G + D +T+ VL A G G L GK +++ + ++I+MY+K
Sbjct: 199 RMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYSK 257
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISGY +AG + +AL+ F ++ G + D +T+ VL A G G KE+
Sbjct: 180 MISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSP 239
Query: 54 -----IELDLSSYSLSSKTSRYAHSGRI--RLAR-DPVSCKAMISGYSQAGRFNEALEPF 105
+ + S + SK +S ++ ++R + V+ MIS Y G+ ++L F
Sbjct: 240 VFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLF 299
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ G+ + VT+ +LA+ S G ++ G
Sbjct: 300 NKMKDCGIQPNSVTLTAILASCSHAGYINEG 330
>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 784
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYS G+ + + ++ LG D ++V V+++ S GA + I +
Sbjct: 412 MILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGA------INIGRSIHC 465
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
Y++ +S Y SG + L RD +S +IS Y Q+G E
Sbjct: 466 YAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAE 525
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIE 148
A+ F K+ V+ ++VT ++VL+A + +LD G +SNI + TA+I+
Sbjct: 526 AIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRTALID 585
Query: 149 MYAK 152
MYAK
Sbjct: 586 MYAK 589
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q+G EA+ F K+ V+ ++VT ++VL+A + + +++ + +
Sbjct: 513 LISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENG 572
Query: 61 YSLSSKTSR------YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ S+ T R YA G + +R D + MIS Y G A+E F
Sbjct: 573 FE-SNITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIF 631
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E + + T + +L+A + G + G+
Sbjct: 632 QLMEESNIKPNAQTFLSLLSACNHTGHVLEGR 663
>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++Q RF E+LE F K+ +E + L+A +G + ++ + S
Sbjct: 118 MVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS S+ Y+ G + A R+ V+ ++I+ Y Q G +EALE F
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF-----LTTAIIEMYAK 152
++ G+ DEVT+ V++A + AL G K+N F L A+++MYAK
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAK 296
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 63/141 (44%), Gaps = 10/141 (7%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EAL F L+ + T +L + I I++ +
Sbjct: 352 LIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSD------IFVGNSLIDMYMKC 405
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S+ + + RD VS A+I GY+Q G EAL+ F K+ G D VTM
Sbjct: 406 GSIEDGSRVFEKMKE----RDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTM 461
Query: 121 VVVLAASSGPGALDFGKSNIF 141
+ VL A S G ++ G+ F
Sbjct: 462 IGVLCACSHAGLVEEGRHYFF 482
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 38/188 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+ Y Q G +EALE F ++ G+ DEVT+ V++A + A L + LQI
Sbjct: 219 LITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCA--LKEGLQIHARVVK 276
Query: 56 ---------LDLSSYSLSSKTSRYAHSGRI--RLA-RDPVSCKAMISGYSQAGRFNEALE 103
L + + +K S+ + R+ R++ R+ VS +M+SGY++A A
Sbjct: 277 TNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARF 336
Query: 104 PFGKLESLGV---------------HTDEVTMVVVLAASS-GPGALDFG---KSNIFLTT 144
F K+ V + + + + +L S P FG KS+IF+
Sbjct: 337 MFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGN 396
Query: 145 AIIEMYAK 152
++I+MY K
Sbjct: 397 SLIDMYMK 404
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D S +M+SG++Q RF E+LE F K+ +E + L+A +G L+ G
Sbjct: 111 DQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVH 170
Query: 137 --------KSNIFLTTAIIEMYAK 152
+++++ +A+I+MY+K
Sbjct: 171 ALVSKSRYSTDVYMGSALIDMYSK 194
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 20/137 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+Q G EAL+ F K+ G D VTM+ VL A S G L +E +
Sbjct: 429 IIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAG---LVEEGR------H 479
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y S + G I L +D +C M+ +AG NEA +E++ V+ D V
Sbjct: 480 YFFSME-----EHGLIPL-KDHYTC--MVDLLGRAGCLNEAK---NLIEAMPVNPDAVVW 528
Query: 121 VVVLAASSGPGALDFGK 137
+LAA G ++ GK
Sbjct: 529 GSLLAACKVHGNIEMGK 545
>gi|255548950|ref|XP_002515531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545475|gb|EEF46980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 397
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLAASSGPGALDFGK- 137
RDPVS AMI GY++ GR ++A++ F +++ GV DE+TMV VL+A + GAL+ GK
Sbjct: 201 RDPVSWSAMIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKW 260
Query: 138 -----------SNIFLTTAIIEMYAK 152
++ L A+I+M+AK
Sbjct: 261 VESYIEKEKVQKSVELCNALIDMFAK 286
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKELQ--IELD 57
MI GY++ GR ++A++ F +++ GV DE+TMV VL+A + GA L K ++ IE +
Sbjct: 209 MIGGYARLGRCSDAIDLFREMQIEGVCRPDEITMVSVLSACTDLGALELGKWVESYIEKE 268
Query: 58 LSSYSL---SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
S+ ++ +A G + A R VS ++I+G + GR EA+E F
Sbjct: 269 KVQKSVELCNALIDMFAKCGDVDKAIKLFRNMKDRTIVSWTSVIAGLAMHGRGLEAVEFF 328
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV D+V + +L+A S G +D G+
Sbjct: 329 EEMIKSGVLPDDVAFIGLLSACSHSGLVDKGR 360
>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+I+GY+Q G ++A++ F ++ G D VT+ +L+A + G + +E+
Sbjct: 245 LIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRG 304
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ YA G + A R C +MIS + G+ EALE F
Sbjct: 305 IELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFS 364
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+ESL + DE+T + VL A G L
Sbjct: 365 TMESLDLKPDEITFIAVLTACVHGGFL 391
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ARD V +I+GY+Q G ++A++ F ++ G D VT+ +L+A + G LD G+
Sbjct: 235 FARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGR 294
Query: 138 S------------NIFLTTAIIEMYAK 152
N F++ A+I+MYAK
Sbjct: 295 EVHSLINHRGIELNQFVSNALIDMYAK 321
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G + GR +EA++ F + GV D VT++ V++A + G G W+ ++
Sbjct: 118 LIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQG 177
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ LAR VS +MI G++ GR +A+E F
Sbjct: 178 LERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFE 237
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ G D VT VL A S G D G L A + A+M
Sbjct: 238 AMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARM 284
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
A D VS A+I G + GR +EA++ F + GV D VT++ V++A + GAL G
Sbjct: 109 APDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMW 168
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 169 VHRLVVRQGLERNVRIANSLIDMYAR 194
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY+ GR NEAL F ++ GV D TMV +L+A + GA L + +++
Sbjct: 67 VINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVG 126
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++ ++ YA G IR A + VS ++I G + G EALE F
Sbjct: 127 LDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFK 186
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+LE G+ E+T V VL A S G +D G
Sbjct: 187 ELERKGLMPSEITFVGVLYACSHCGMVDEG 216
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ V+ ++I+GY+ GR NEAL F ++ GV D TMV +L+A + GAL G+
Sbjct: 59 RNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRA 118
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ A++++YAK
Sbjct: 119 HVYMVKVGLDGNLHAGNALLDLYAK 143
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISG AG+ EAL F ++++ G+ D V +V L A + G WI A + E
Sbjct: 221 MISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHE 280
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
+++ YA G + ++ VS AMISGY+ GR EALE F
Sbjct: 281 IEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFM 340
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+++ GV +++T +L A S G + K
Sbjct: 341 KMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ S +S Y G I +A R+ +S +MISG AG+ EAL F +++
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G+ D V +V L A + G LD GK + L +I+MYAK
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK 297
>gi|302795326|ref|XP_002979426.1| hypothetical protein SELMODRAFT_110980 [Selaginella moellendorffii]
gi|300152674|gb|EFJ19315.1| hypothetical protein SELMODRAFT_110980 [Selaginella moellendorffii]
Length = 342
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
M+SGYSQAG+ EAL+ + +++S GV + VT++ VL A + G + +
Sbjct: 95 MVSGYSQAGQGREALDLYQRMDSEGVEPNRVTLLGVLGACGNSQLLAEGRSVHSRIRSSR 154
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALE 103
E DLS + + + YA G ++ A + VS AMI G+++ G EA+E
Sbjct: 155 RESDLSLEA--ALVTMYARCGSLQEAEKVFDGISRKNNLVSWTAMIVGFAKHGHAEEAME 212
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ ++E G D+VT + +L A S G + G A E+ +M
Sbjct: 213 MYRRMELDGAEPDDVTFITILVACSHSGLISSGHECFTSMAAEWEIAPRM 262
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D VS AM+SGYSQAG+ EAL+ + +++S GV + VT++ VL A L G
Sbjct: 87 KDVVSWNAMVSGYSQAGQGREALDLYQRMDSEGVEPNRVTLLGVLGACGNSQLLAEGRSV 146
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+S++ L A++ MYA+
Sbjct: 147 HSRIRSSRRESDLSLEAALVTMYAR 171
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISG AG+ EAL F ++++ G+ D V +V L A + G WI A + E
Sbjct: 221 MISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHE 280
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
+++ YA G + ++ VS AMISGY+ GR EALE F
Sbjct: 281 IEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFM 340
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+++ GV +++T +L A S G + K
Sbjct: 341 KMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ S +S Y G I +A R+ +S +MISG AG+ EAL F +++
Sbjct: 183 DTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQ 242
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G+ D V +V L A + G LD GK + L +I+MYAK
Sbjct: 243 TAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAK 297
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GY Q G +EA E + G E + VL+A G + A L I
Sbjct: 390 IIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIG 449
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ LS+ + Y G I A D VS AMI+GY++ G E ++ F
Sbjct: 450 LEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFE 509
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ +G+ D VT + VL+A S G +D G
Sbjct: 510 KIPRVGLRPDSVTFIGVLSACSHAGLVDLG 539
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+G +AG EAL F ++ V D T + L A + GA +E+ +
Sbjct: 188 IITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKG 247
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D+SS+ ++ + Y G++ RD VS +I+ Q G+ A++ F
Sbjct: 248 FDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFI 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V +E T V++ + +++G+ +++ + +I+ MYAK
Sbjct: 308 RMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAK 365
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Q G+ A++ F ++ V +E T V++ + ++L + L
Sbjct: 289 IITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLG 348
Query: 58 LSSYSLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L++ SLS + S YA G++ + RD VS +I+GY Q G +EA E
Sbjct: 349 LAA-SLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELL 407
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G E + VL+A L+ GK + +A+I MY K
Sbjct: 408 SWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCK 466
Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFG--KLESLGVHTDEVTMVVV-----LTASSGPGAWILAKELQ 53
+ISGY A +EAL F ++ES G+ D + + L + G + ++
Sbjct: 86 LISGYVNANDSSEALLLFKNMRVES-GLRIDPFILSLAHKACGLNSDVNYGELLHGYAVK 144
Query: 54 IELDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
L S + S+ Y +G+I R+ R+ VS A+I+G +AG EAL
Sbjct: 145 TGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVY 204
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ V D T + L A + GAL++G+
Sbjct: 205 FSEMWRSRVEYDSYTFAIALKACADSGALNYGR 237
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG+++ G EA+ F ++E + D T++ +L A + G L +++ + ++
Sbjct: 286 IVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNN 345
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +++ S YA GR+ +A +D VS AM+ G + G +ALE F
Sbjct: 346 FKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFK 405
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G ++VTM+ VL A + G +D G
Sbjct: 406 RMKEEGFSPNKVTMIGVLCACTHAGLIDDG 435
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MISG ++ G + EA + F ++ D ++ +L G A +L E+ + +
Sbjct: 193 MISGLAKGGLYEEARKVFDEMPE----KDGISWNTMLDGYVKVGKMDDAFKLFDEMPERN 248
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S S+ Y +G + +AR + VS ++SG+++ G EA+ F ++E
Sbjct: 249 VVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEK 308
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG-------KSNIF-----LTTAIIEMYAK 152
+ D T++ +LAA + G L G K+N F ++ A+++MYAK
Sbjct: 309 ACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAK 362
>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 837
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+GY Q G F EAL+ F L S + + T + A S G + A ++
Sbjct: 364 MITGYCQIGEFEEALKIFESLRSNIENLNSFTYTSIFQACSALADFSTGTQVHADAIKRS 423
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L S + S+ + Y+ GR+ A D V+ A+++GY+ G EAL+ F
Sbjct: 424 LIASQHGESAMITMYSRCGRLDYANLAFETIDGPDAVAWTAIVAGYAYQGNATEALKHFW 483
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
+++ G + +T + VL A S G + GK + L ++
Sbjct: 484 RMQGSGARPNAITFIAVLTACSHSGLVAEGKQYLDLMSS 522
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 61/149 (40%), Gaps = 26/149 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIEL 56
++ GY+QAG+ AL+ F K+ V DE + L A +G KEL QI
Sbjct: 263 LMVGYTQAGKQKNALDLFAKMVCEDVELDEYVFSISLKACAG------LKELSFGRQIHG 316
Query: 57 DLSSYSLSSKTSR-------YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNE 100
+ L S+ S Y LA + VS AMI+GY Q G F E
Sbjct: 317 HIVKLGLESEVSVGTPLVDFYIKCASFELASKVFEGISEPNDVSWSAMITGYCQIGEFEE 376
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSG 129
AL+ F L S + + T + A S
Sbjct: 377 ALKIFESLRSNIENLNSFTYTSIFQACSA 405
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+IS Y++ G ++AL F + SLG++ + + +L + P + K++ I
Sbjct: 162 IISAYAEHGLLDKALSLFISMISLGINPNSSIYIDLLRSLLNPSLLGIGKQIHSHSIRSG 221
Query: 58 LSS-YSLSSKTSR-YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + S+++ S Y G + A ++ V+ ++ GY+QAG+ AL+ F
Sbjct: 222 LGAGVSINTAISNMYVRCGWLDGAELFINNMAEKNAVAWTGLMVGYTQAGKQKNALDLFA 281
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ V DE + L A +G L FG+
Sbjct: 282 KMVCEDVELDEYVFSISLKACAGLKELSFGR 312
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ G+++ G + F +L G D T+ V+ A G I +
Sbjct: 131 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 190
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LDL + ++ Y I AR D V+ MI GY++ G+ NE+L F
Sbjct: 191 LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 250
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL-------DFGKS-----NIFLTTAIIEMYAK 152
K+ GV D+V MV V+ A + GA+ D+ + ++ L TA+I+MYAK
Sbjct: 251 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 308
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ G+++ G + F +L G D T+ V+ A G I +
Sbjct: 807 MVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 866
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LDL + ++ Y I AR D V+ MI GY++ G NE+L F
Sbjct: 867 LDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFD 926
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ GV D+V MV V+ A + GA+ ++ ++ L TA+I+M+AK
Sbjct: 927 KMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAK 984
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI GY++ G NE+L F K+ GV D+V MV V+ A + GA +I K+
Sbjct: 908 MIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKK 967
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
Q+++ L + + +A G + AR + +S AMI+ Y G+ +AL
Sbjct: 968 FQLDVILGT----AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 1023
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F + G+ +++T+V +L A S G ++ G
Sbjct: 1024 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 1057
>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Vitis vinifera]
Length = 786
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY + G EALE F +++ G ++ T VL S G I A ++ +
Sbjct: 109 LISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQ 168
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
D +++ ++ YA I A R+ V AM++GYSQ G ++A+E F
Sbjct: 169 FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECF 228
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ ++ T +L A A FG +N+F+ +A+++MY+K
Sbjct: 229 RDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSK 287
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---GPGAWILAKELQIELD 57
MI G + G EAL F + + DE T VL S + L ++
Sbjct: 312 MIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTG 371
Query: 58 LSSYSLSSK--TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+Y L + YA G A +D +S ++++G G + EAL F
Sbjct: 372 FEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFC 431
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ +G+H D++ + VL+A + L+FGK S++ + +++ MYAK
Sbjct: 432 EMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAK 489
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
M++GYSQ G ++A+E F + G+ ++ T +LTA + G GA + ++
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG 270
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ Y+ G + AR DPVS +MI G + G EAL F
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFR 330
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE T VL S
Sbjct: 331 IMHLRHMKIDEFTYPSVLNCFS 352
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 40 SSGPGAWILA------------KELQIELDLSSYSLSSKTSRYAHSGRIRLARD-----P 82
SS W+L+ K + D S ++ YA+SGR+ AR P
Sbjct: 40 SSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETP 99
Query: 83 V-SC---KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
+ SC ++ISGY + G EALE F +++ G ++ T VL S L+ GK
Sbjct: 100 IRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQ 159
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN F+ T +++MYAK
Sbjct: 160 IHAHAIKTQFDSNAFVVTGLVDMYAK 185
>gi|242042383|ref|XP_002468586.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
gi|241922440|gb|EER95584.1| hypothetical protein SORBIDRAFT_01g048560 [Sorghum bicolor]
Length = 581
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY + GRF +ALE F ++ + GV + + A +G GA +E+ ++ S
Sbjct: 208 MMSGYVKTGRFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREVHRWVERSG 267
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ K + Y G + A R S MI G++ GR +AL FG
Sbjct: 268 IEMDDKLATAVVDMYCKCGCVEEAWRVFEALPARGLTSWNCMIGGFAVHGRGEDALNLFG 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E GV D+VT+V VL A + G + G+
Sbjct: 328 LMEREGVAPDDVTLVNVLTACAHAGMVSEGR 358
Score = 44.7 bits (104), Expect = 0.012, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AM+SGY + GRF +ALE F ++ + GV + + A +G GAL G+
Sbjct: 200 RNLVSWNAMMSGYVKTGRFLDALEVFDEMRARGVDGNAFVAATAVVACTGAGALARGREV 259
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L TA+++MY K
Sbjct: 260 HRWVERSGIEMDDKLATAVVDMYCK 284
>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
Length = 588
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 24/167 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGYSQ R ++A E F + G+H +V V + EL + + S
Sbjct: 107 MISGYSQNERPDQAWELFIMMLRAGIH--QVKQVHAFAVKTNF-------ELHMFVGSSL 157
Query: 61 YSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
+ +K+ + R+ ARD VS A++SGY+Q G EAL+ F L + G+ ++
Sbjct: 158 LDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFRLLYNEGMQCNQ 217
Query: 118 VTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
VT +L A SG ++D+GK + L ++I+MY+K
Sbjct: 218 VTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSK 264
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY+Q G EAL+ F L + G+ ++VT +L A SG + IL +E
Sbjct: 188 ILSGYTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRE 247
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + L + + SK + +S R+ + R VS AM+ GY + G +E ++ F
Sbjct: 248 LPFFMALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFR 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ V D VT++ VL+ S G +D G
Sbjct: 308 SMCD-EVKPDSVTLLAVLSGYSHGGLVDEG 336
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
R+ VS AMISGYSQ R ++A E F + G+H +V V A + + +
Sbjct: 99 RNVVSWTAMISGYSQNERPDQAWELFIMMLRAGIH--QVKQVHAFAVKTN------FELH 150
Query: 140 IFLTTAIIEMYAK 152
+F+ +++++MYAK
Sbjct: 151 MFVGSSLLDMYAK 163
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIE 55
+I GY + R NEAL + + S G ++V MV ++ T + G +L+ +++
Sbjct: 301 IIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMG 360
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA------------------------------------ 79
D + S+ YA GRI A
Sbjct: 361 FDCYDFIQSTIIHLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFN 420
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
RD S MISGY+Q + N ALE F K+ + G+ +EVTMV VL+A + G L
Sbjct: 421 EMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKE 480
Query: 136 GK-------SNIF-----LTTAIIEMYAK 152
G+ +N L+ AII+MYAK
Sbjct: 481 GRWAHEYVHNNSITVSDNLSAAIIDMYAK 509
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q + N ALE F K+ + G+ +EVTMV VL+A + G + + +S
Sbjct: 433 MISGYTQNEQPNLALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNS 492
Query: 61 YSLSSKTS-----RYAHSGRIRLA-------RDPVSC----KAMISGYSQAGRFNEALEP 104
++S S YA G I A R+ S A+I G + G N +L+
Sbjct: 493 ITVSDNLSAAIIDMYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKI 552
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F LE + + +T + VL A G ++ GK
Sbjct: 553 FSDLERRHIKLNAITFIGVLTACCHVGLVESGK 585
Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 48/194 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-W-------ILAKEL 52
MI G+SQ +N+A+E F ++ ++GV +EVT+ +++A S G W ++ K L
Sbjct: 169 MIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKML 228
Query: 53 QIELDLSS------YSLSS---------------------------KTSRYAHSGRIRLA 79
E L S Y + S + + S R+
Sbjct: 229 FEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVFE 288
Query: 80 RDP----VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
R P V+ +I GY + R NEAL + + S G ++V MV +++ A+
Sbjct: 289 RIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTE 348
Query: 136 GKSNIFLTTAIIEM 149
G+ L +A+++M
Sbjct: 349 GQQ---LLSAVVKM 359
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
VS MI G+SQ +N+A+E F ++ ++GV +EVT+ +++A S G +
Sbjct: 164 VSYTTMIMGFSQNECWNQAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGI 214
>gi|115452665|ref|NP_001049933.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|108707812|gb|ABF95607.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548404|dbj|BAF11847.1| Os03g0314400 [Oryza sativa Japonica Group]
gi|125586044|gb|EAZ26708.1| hypothetical protein OsJ_10614 [Oryza sativa Japonica Group]
Length = 648
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------------------G 42
MIS + + G+F EAL F + G DE MV V+ A + G
Sbjct: 237 MISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAG 296
Query: 43 PGAWILAKELQIEL------------------DLSSYSLSSKTSRYAHSGRIRLAR---- 80
G+ + + I + L +S +S + Y +G ++ A+
Sbjct: 297 LGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFT 356
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS MISG Q + +EAL F +++ G+ DEVT+V V++A + +L+
Sbjct: 357 VMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQ 416
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GKS + L T++I+MY K
Sbjct: 417 GKSMHEYIREHQYTITVILGTSLIDMYMK 445
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG Q + +EAL F +++ G+ DEVT+V V++A + + K + +
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQ 428
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y++ +S Y G + A R A+I G + G ++L+ F
Sbjct: 429 YTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFS 488
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFGK 137
++ES T +E+T VL+A G ++ G+
Sbjct: 489 EMESSSTATPNEITFTGVLSACRHAGLVEEGQ 520
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
++SS S + G + AR D + AMIS + + G+F EAL F + G
Sbjct: 202 AVSSMVSLFGRRGMVDEARKVFDVVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEG 261
Query: 113 VHTDEVTMVVVLAASS 128
DE MV V+AA +
Sbjct: 262 WPVDEAVMVCVVAACA 277
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + G + +AL+ F +++ +G+ DE++++ VL A + GA + K + + D +
Sbjct: 214 MITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNG 273
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I A +D +S MI G + G+ EA++ F
Sbjct: 274 FLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFE 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + V +E+T + VL A S G D G
Sbjct: 334 EMCKVRVAPNEITFLGVLLACSHTGLWDEG 363
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
R VS MI+GY + G + +AL+ F +++ +G+ DE++++ VL A + GAL+ GK
Sbjct: 205 VRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKW 264
Query: 138 ------SNIFL-----TTAIIEMYAK 152
N FL A+IEMYAK
Sbjct: 265 IHMYADKNGFLRKTGICNALIEMYAK 290
>gi|302792260|ref|XP_002977896.1| hypothetical protein SELMODRAFT_107423 [Selaginella moellendorffii]
gi|300154599|gb|EFJ21234.1| hypothetical protein SELMODRAFT_107423 [Selaginella moellendorffii]
Length = 201
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 82/153 (53%), Gaps = 21/153 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
M+SGYSQAG+ EAL+ + +++S GV + VT++ VL A + G + +
Sbjct: 1 MVSGYSQAGQGREALDLYQRMDSEGVEPNRVTLLGVLGACGNSQLLAEGRSVHSRIRSSR 60
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E DLS ++ + YA G ++ A ++ VS AM++ Y+Q G F++A+E
Sbjct: 61 RESDLSLE--AALVTMYARCGSLQEAEKVFDGISRKNVVSWTAMLTAYAQTGHFHKAVEL 118
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +++ V +++T V VL A S G L G+
Sbjct: 119 YQRMD---VEPNKITFVAVLTAISSLGDLKLGE 148
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG----------- 136
M+SGYSQAG+ EAL+ + +++S GV + VT++ VL A L G
Sbjct: 1 MVSGYSQAGQGREALDLYQRMDSEGVEPNRVTLLGVLGACGNSQLLAEGRSVHSRIRSSR 60
Query: 137 -KSNIFLTTAIIEMYAK 152
+S++ L A++ MYA+
Sbjct: 61 RESDLSLEAALVTMYAR 77
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+Q G F++A+E + +++ V +++T V VLTA S G L + +
Sbjct: 102 MLTAYAQTGHFHKAVELYQRMD---VEPNKITFVAVLTAISSLGDLKLGERI-------- 150
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
+A +++ D A+I+ YS+ GR ++A + F +E V T
Sbjct: 151 ---------HARIAALKIQPDGPLGNALITMYSRCGRIDQARKVFDGIERRDVIT 196
>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
Length = 719
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ISGY + G EALE F +++ G ++ T VL S G I A ++ +
Sbjct: 109 LISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQ 168
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
D +++ ++ YA I A R+ V AM++GYSQ G ++A+E F
Sbjct: 169 FDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECF 228
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G+ ++ T +L A A FG +N+F+ +A+++MY+K
Sbjct: 229 RDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSK 287
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 33/146 (22%)
Query: 40 SSGPGAWILA------------KELQIELDLSSYSLSSKTSRYAHSGRIRLARD-----P 82
SS W+L+ K + D S ++ YA+SGR+ AR P
Sbjct: 40 SSSDSNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETP 99
Query: 83 V-SC---KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
+ SC ++ISGY + G EALE F +++ G ++ T VL S L+ GK
Sbjct: 100 IRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQ 159
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN F+ T +++MYAK
Sbjct: 160 IHAHAIKTQFDSNAFVVTGLVDMYAK 185
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 70/166 (42%), Gaps = 32/166 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
M++GYSQ G ++A+E F + G+ ++ T +LTA + G GA + ++
Sbjct: 211 MVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSG 270
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S+ Y+ G + AR DPVS +MI G + G EAL F
Sbjct: 271 FGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFR 330
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAK 152
+ + DE T P + A+++MYAK
Sbjct: 331 IMHLRHMKIDEFTY---------PS---------LVNNALVDMYAK 358
Score = 38.9 bits (89), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 15/73 (20%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
+D +S ++++G G + EAL F ++ +G+H D++ + VL+A
Sbjct: 375 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA------------- 421
Query: 140 IFLTTAIIEMYAK 152
L +++ MYAK
Sbjct: 422 --LDNSLVSMYAK 432
Score = 38.9 bits (89), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 19/100 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++G G + EAL F ++ +G+H D++ + VL+A LD S
Sbjct: 383 LVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA----------------LDNSL 426
Query: 61 YSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGR 97
S+ +K + ++ + +D ++ A+I GY+Q GR
Sbjct: 427 VSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGR 466
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+I+GY + G F EALE F ++ G + ++V LTA + GA WI A +
Sbjct: 215 LIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHH 274
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L ++ YA G I +A RD + +ISG + + A++ F
Sbjct: 275 MSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFN 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ GV +EVT V VL A S G +D G
Sbjct: 335 RMQDEGVVPNEVTFVCVLNACSRMGMVDEG 364
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 23/123 (18%)
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
++ I+ D+ +++ S Y +SG++ +AR +PVS A+I+GY + G F EA
Sbjct: 171 DMSIKRDVVTWT--CLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEA 228
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEM 149
LE F ++ G + ++V L A + GALD G+ + L TA+I+M
Sbjct: 229 LEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIHAYVKRHHMSLDRMLGTALIDM 288
Query: 150 YAK 152
YAK
Sbjct: 289 YAK 291
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q +AL F +++ G+ D + + ++ +G A ++ + +S
Sbjct: 417 MIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSG 476
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ + YA GRIR A +D ++ ++SG++Q+G EAL+ F
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ GV + T V L+AS+ + GK
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG++Q+G EAL+ F +++ GV + T V L+AS+ K++ + +
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ S Y G A R+ VS +I+ SQ GR EAL+ F
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+ ++VT + VLAA S G ++ G S
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLS 669
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G EAL + ++ GV + VL SS A + A+ I
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQGRLIHAQGYK 171
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ S+ + Y G RLA RD V+ +ISG++Q G ALE
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT+ +LAA + G L G
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263
>gi|125543615|gb|EAY89754.1| hypothetical protein OsI_11297 [Oryza sativa Indica Group]
Length = 648
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 88/209 (42%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------------------G 42
MIS + + G+F EAL F + G DE MV V+ A + G
Sbjct: 237 MISCFQRNGKFAEALALFSDMRGEGWPVDEAVMVCVVAACARLEVTRNGEMCHGLAFRAG 296
Query: 43 PGAWILAKELQIEL------------------DLSSYSLSSKTSRYAHSGRIRLAR---- 80
G+ + + I + L +S +S + Y +G ++ A+
Sbjct: 297 LGSRLNVQNALIHMYSSFLNVVAARRLFDSGQCLDQFSWNSMIAGYLKNGSVKDAKELFT 356
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D VS MISG Q + +EAL F +++ G+ DEVT+V V++A + +L+
Sbjct: 357 VMPDKDNVSWTTMISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQ 416
Query: 136 GKS------------NIFLTTAIIEMYAK 152
GKS + L T++I+MY K
Sbjct: 417 GKSMHEYIREHQYTITVILGTSLIDMYMK 445
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG Q + +EAL F +++ G+ DEVT+V V++A + + K + +
Sbjct: 369 MISGCVQNDQSSEALTIFNNMQAQGIKPDEVTLVSVISACTNMSSLEQGKSMHEYIREHQ 428
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y++ +S Y G + A R A+I G + G ++L+ F
Sbjct: 429 YTITVILGTSLIDMYMKCGCLESALEVFDTMEERGTPCWNAVIVGLAMNGLVMKSLDMFS 488
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFGK 137
++ES T +E+T VL+A G ++ G+
Sbjct: 489 EMESSSTATPNEITFTGVLSACRHAGLVEEGQ 520
Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
++SS S + G + AR D + AMIS + + G+F EAL F + G
Sbjct: 202 AVSSMVSLFGRRGMVDEARKVFDGVERKDVFTWTAMISCFQRNGKFAEALALFSDMRGEG 261
Query: 113 VHTDEVTMVVVLAASS 128
DE MV V+AA +
Sbjct: 262 WPVDEAVMVCVVAACA 277
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+++GY+Q G+ +A++ F +++ GV +E T+ L+ S ++L I+
Sbjct: 604 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG 663
Query: 58 LSS--YSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
S + S+ YA G + ++RD VS +I GYSQ G+ +AL+ F
Sbjct: 664 QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFE 723
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ G DEVT + VL+A S G ++ GK S I+ T IE YA M
Sbjct: 724 AMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM 776
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
+I+ Q G+ EA E F ++ GV ++ T+ +++A++ G I A +
Sbjct: 402 IITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYG 461
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ + Y G ++ RD +S A++SG+ + L F
Sbjct: 462 FEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFN 521
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + G + + T + +L + S +D GK N F+ TA+++MYAK
Sbjct: 522 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 579
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS A+I+G+ G + A+ F ++ GV +E T L A S L+FGK
Sbjct: 192 RDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQV 251
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F+ +A++++YAK
Sbjct: 252 HAEAIKVGDFSDLFVGSALVDLYAK 276
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q +AL F +++ G+ D + + ++ +G A ++ + +S
Sbjct: 417 MIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSG 476
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ + YA GRIR A +D ++ ++SG++Q+G EAL+ F
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ GV + T V L+AS+ + GK
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG++Q+G EAL+ F +++ GV + T V L+AS+ K++ + +
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ S Y G A R+ VS +I+ SQ GR EAL+ F
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+ ++VT + VLAA S G ++ G S
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLS 669
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G EAL + ++ GV + VL SS A + A+ I
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQGRLIHAQGYK 171
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ S+ + Y G RLA RD V+ +ISG++Q G ALE
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT+ +LAA + G L G
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263
>gi|77548396|gb|ABA91193.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125533163|gb|EAY79711.1| hypothetical protein OsI_34859 [Oryza sativa Indica Group]
gi|125575980|gb|EAZ17202.1| hypothetical protein OsJ_32710 [Oryza sativa Japonica Group]
Length = 537
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+ISGY++ G++ +ALE F +++ + E+T+V++L A + G L ++ I L
Sbjct: 318 LISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKG 377
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S L ++ YA GR+ LA RD AMI G+S G EALE F
Sbjct: 378 IVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELF- 436
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
+S+ + + VT + VL A S G ++ G+ ++IE Y
Sbjct: 437 --DSMKIEPNPVTFLGVLTACSHGGLVNEGRKYF---NSMIEDY 475
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
++S Y + GR +A + F ++ + V+ ++ A W+ A+ + E +
Sbjct: 225 LVSMYGKFGRLGDARKAFDEMPD----KNAVSWNALVGAHRAAADWMGAERVSQAMPERN 280
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
LS ++ ++ +R G + A RD VS ++ISGY++ G++ +ALE F ++
Sbjct: 281 LSWWN--AEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEM 338
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + E+T+V++L A + G L+ G S+ + A+I+MYAK
Sbjct: 339 KENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAK 394
>gi|297727903|ref|NP_001176315.1| Os11g0114800 [Oryza sativa Japonica Group]
gi|255679719|dbj|BAH95043.1| Os11g0114800, partial [Oryza sativa Japonica Group]
Length = 483
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+ISGY++ G++ +ALE F +++ + E+T+V++L A + G L ++ I L
Sbjct: 264 LISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKG 323
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S L ++ YA GR+ LA RD AMI G+S G EALE F
Sbjct: 324 IVSDGLVGNALIDMYAKCGRLDLAKKVFDRMSMRDITCWNAMIIGFSVHGCSYEALELF- 382
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150
+S+ + + VT + VL A S G ++ G+ ++IE Y
Sbjct: 383 --DSMKIEPNPVTFLGVLTACSHGGLVNEGRKYF---NSMIEDY 421
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 86/176 (48%), Gaps = 30/176 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
++S Y + GR +A + F ++ + V+ ++ A W+ A+ + E +
Sbjct: 171 LVSMYGKFGRLGDARKAFDEMPD----KNAVSWNALVGAHRAAADWMGAERVSQAMPERN 226
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
LS ++ ++ +R G + A RD VS ++ISGY++ G++ +ALE F ++
Sbjct: 227 LSWWN--AEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEM 284
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + E+T+V++L A + G L+ G S+ + A+I+MYAK
Sbjct: 285 KENAIEPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAK 340
>gi|302768433|ref|XP_002967636.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
gi|300164374|gb|EFJ30983.1| hypothetical protein SELMODRAFT_88474 [Selaginella moellendorffii]
Length = 747
Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++ SQ G+ +ALE F + GV VT V + A S G I A+ L+
Sbjct: 289 MVAALSQRGKNRQALELFNRTSLEGVKPSGVTFVSGIDACSDGGDEQQGRAIHARALEAG 348
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y G + AR + VSC ++I Y Q G AL+ F
Sbjct: 349 FGSDEVVTGCLINMYGKCGNLEQARRMLEASGWNNLVSCTSLIWAYCQHGLLENALDVFH 408
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E G+ ++VT+V V+AA LD G+ S++ +T A+I MY K
Sbjct: 409 RVEQGGIKANKVTLVSVVAAFWSSDFLDRGRAMHARLIELGHSSDVIVTNALIGMYGK 466
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I SQ G AL+ F +++ G +T+ VL A K + +E
Sbjct: 491 IIGACSQQGDGKSALDLFARMDLSGSSPTTITLANVLEACVRINDLPRGKVIHLEIRGSM 550
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-----RDPVSC----KAMISGYSQAGRFNEALEPFG 106
L+ SS + Y G + A R SC +MI+ Y++ RF ++L+
Sbjct: 551 LEHDPNVRSSLLNMYTKCGSLVDAEKIFQRWQSSCVVTWTSMIAAYAKHARFEDSLKLGR 610
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E GV +EVT + V+ A S G ++ G
Sbjct: 611 RMEMEGVKFNEVTFLTVIFACSHAGFVEQG 640
>gi|255545590|ref|XP_002513855.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546941|gb|EEF48438.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY G +EAL F +L GV + T V +L S + L +++ + +
Sbjct: 38 MINGYVSFGLDDEALRLFSELIENGVTANNRTFVCILNVCSKRLDFELGRQIHACVVKGN 97
Query: 61 YSL----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ S+ S YA G + A +D V ++IS SQ GR EA F +
Sbjct: 98 WRNLIVDSAIVSFYAQCGDLESAFCAFFQVREKDVVCWTSVISACSQQGRGEEAFRMFSQ 157
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ G +E T+ +L A AL FG K ++F+ T++++MYAK
Sbjct: 158 MLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKGMYKDDVFIGTSLVDMYAK 214
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY++ G EA+ F ++ + ++ +T+V VL A A + +E+ ++ S
Sbjct: 239 IIAGYARKGLGEEAIRLFRVMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSG 298
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ Y G +A R+ VS AMISGY G EALE
Sbjct: 299 IQSNVYLGSTLVWFYCKCGEFNIASKVLQQMSFRNVVSWTAMISGYIGLGYEFEALEFLK 358
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV +E T L A + ++ GK SN+++ +A+I MY+K
Sbjct: 359 EMMDEGVEPNEFTYSSALKACANLESVLQGKLIHSFANKTPASSNVYVGSALIYMYSK 416
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS SQ GR EA F ++ G +E T+ +L A A ++L +
Sbjct: 138 VISACSQQGRGEEAFRMFSQMLGEGFLPNEFTVCAILKACGEKKALKFGRQLHCAIVKGM 197
Query: 61 YSL-----SSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y +S YA G + R+ V+ ++I+GY++ G EA+ F
Sbjct: 198 YKDDVFIGTSLVDMYAKCGEMIDSKEVFDGMRKRNTVTWTSIIAGYARKGLGEEAIRLFR 257
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + ++ +T+V VL A A G+ SN++L + ++ Y K
Sbjct: 258 VMKRRKIISNNLTVVSVLRACGSISASLTGREVHAQIIKSGIQSNVYLGSTLVWFYCK 315
>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g33680-like [Cucumis sativus]
Length = 710
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI+GY+QAG +EAL F + G E T V V+ A S GA K+ L+
Sbjct: 286 MITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAG 345
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y +++ YA G + AR D V +MISGY+Q G AL +
Sbjct: 346 YECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYC 405
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ + E+TM VL A S AL+ GK
Sbjct: 406 RMQMERIMPHELTMASVLRACSSLAALEQGK 436
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G AL + +++ + E+TM VL A S A K++ +
Sbjct: 387 MISGYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYG 446
Query: 61 YSL-----SSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+SL S+ ++ YA G R +RD ++ AMISG SQ G +ALE F
Sbjct: 447 FSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFE 506
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+L D VT V VL+A S G ++ GK
Sbjct: 507 ELRHGTTKPDYVTFVNVLSACSHMGLVERGK 537
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D ++ AMI+GY+QAG +EAL F + G E T V V+ A S GAL+ GK
Sbjct: 278 KDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSDIGALEEGKQI 337
Query: 138 ----------SNIFLTTAIIEMYAK 152
I+ TA+++MYAK
Sbjct: 338 HGYSLKAGYECQIYFMTALVDMYAK 362
>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
Length = 1096
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 24/174 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWILAKELQIELDLS 59
M+S ++ G + +L+ + ++ G D++T + VL A S A A ++ELD++
Sbjct: 500 MLSAFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQSVSEARRYAATFELELDIA 559
Query: 60 SYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ + + S YA G ++ A+ + V+ AMISG +Q G +ALE F K+E
Sbjct: 560 ARN--AAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWKME 617
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS--------NIF---LTTAIIEMYAK 152
GV + VT + L A S L G+ NI L+ A+I MY K
Sbjct: 618 LEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLENIHEANLSNAVINMYGK 671
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MISG +Q G +ALE F K+E GV + VT + L A S ++L + +
Sbjct: 596 MISGLAQHGESKQALECFWKMELEGVRANSVTYLASLEACSSLKDLTRGRQLHARILLEN 655
Query: 58 LSSYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ +LS+ + Y G + A RD +S MI+ Y+Q G +ALE F +
Sbjct: 656 IHEANLSNAVINMYGKCGSLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALEFFKQ 715
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS--NIFLT------------TAIIEMYAK 152
++ G D T + + A +L GK+ +I T TA++ MYA+
Sbjct: 716 MDLEGWTPDRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYAR 774
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
A+I+ Y++ G E L F K++ G D VL A S GAL+ GK+
Sbjct: 97 ALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEGKA 148
>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g37170-like [Glycine max]
Length = 693
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI + GR E F L GV +E T VL A + A L KE +
Sbjct: 292 MIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAG 351
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D S+++S+ Y+ G R+AR D VS ++I GY+Q G+ +EAL F
Sbjct: 352 YDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFE 411
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L G D+VT V VL+A + G +D G
Sbjct: 412 LLLQSGTKPDQVTYVGVLSACTHAGLVDKG 441
>gi|255578953|ref|XP_002530329.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530133|gb|EEF32045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 342
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYSQ G + LE + ++E GV D VT+ VL++ + GA + +E++ +++
Sbjct: 174 MINGYSQNGLATDVLELYREMELSGVSPDAVTLAGVLSSCAHLGAQSVGREIEERMNVCG 233
Query: 61 YSL-----SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ + YA G + ARD VS A++ GY G A++ F
Sbjct: 234 FASNPFLNNALINLYARCGNLVRARDIFDGMPVKSVVSWTAILGGYGMHGEGETAVKLFN 293
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ GV D V VL+A S G +D G
Sbjct: 294 DMIRTGVRPDGTAFVSVLSACSHAGLIDKG 323
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
++ AMI+GYSQ G + LE + ++E GV D VT+ VL++ + GA G+
Sbjct: 169 ITWNAMINGYSQNGLATDVLELYREMELSGVSPDAVTLAGVLSSCAHLGAQSVGREIEER 228
Query: 138 -------SNIFLTTAIIEMYAK 152
SN FL A+I +YA+
Sbjct: 229 MNVCGFASNPFLNNALINLYAR 250
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY + G +EA + + K+ L V DEVTM+ V++AS+ L ++L +
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 57 -----------------------------DLSSYSLSSKTSR---YAHSGRIRLA----- 79
+++ ++ S T+ YA G + A
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+D V A+I G+ QA R EAL F ++++ V D++T+V L+A S GALD
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G N+ L TA+++MYAK
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAK 435
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G+ QA R EAL F ++++ V D++T+V L+A S GA + + +D +
Sbjct: 359 LIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHN 418
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA G I+ A R+ ++ A+I G + G+ + A+ F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
++ S+G+ DE+T + VL+A G +D G+ + T+
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS ++I+GY + G +EA + + K+ L V DEVTM+ V++AS+ L G+
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L A+++MY K
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIK 303
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYSQ NEALE F ++ D++TM VL A +G A +E+ +
Sbjct: 744 MIGGYSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRG 802
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + YA G + LA +D +S MI+GY G NEA+ F
Sbjct: 803 YFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 862
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ DE + V+L A S G L+ G
Sbjct: 863 EMRIAGIEPDESSFSVILNACSHSGLLNEG 892
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 39/183 (21%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
I+ Y + G +++A+ F +++S GV D T+ ++ A + + L D+ SY
Sbjct: 644 IAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA------CSSSLDKGRDVHSY 697
Query: 62 SL-----------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
+ ++ + YA G + AR D VS MI GYSQ NEA
Sbjct: 698 VIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEA 757
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
LE F ++ D++TM VL A +G ALD G+ S++ + A+++M
Sbjct: 758 LELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDM 816
Query: 150 YAK 152
YAK
Sbjct: 817 YAK 819
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++S Y++ G F E++ F K++ LGV + T VL + G K + ++L
Sbjct: 441 LMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLG 500
Query: 58 LSSYS--LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S + ++S + Y G + A D VS +MI+G G LE F
Sbjct: 501 FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFI 560
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ LGV D T+V VL A + G L G++ + + +++MY+K
Sbjct: 561 QMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSK 618
>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 675
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+GY++ +EA+ F + S V +EVTM+ +L+A S G I K+
Sbjct: 224 MINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHEHIRRKD 283
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLAR---- 80
+ L+L + +S +S + YA +G + AR
Sbjct: 284 ITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFD 343
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALD 134
+ VS AMI+GYSQ + EALE F + + +G+ E T+V VL+AS G L+
Sbjct: 344 EMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLE 403
Query: 135 FGKS-------------NIFLTTAIIEMYAK 152
G+ ++ L A+++MYAK
Sbjct: 404 MGQEIHCNHVNKIGIQVSLILKNAVMDMYAK 434
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKEL------Q 53
MI+GYSQ + EALE F + + +G+ E T+V VL+AS G + +E+ +
Sbjct: 356 MIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNK 415
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I + +S ++ YA G I A ++ VS +MIS Y+ G +AL
Sbjct: 416 IGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYASYGHAKKALTL 475
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
F ++ G+ D +T + VL+A S G + G++ N F E YA M
Sbjct: 476 FDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKREHYACM 530
Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D V+ MI+GY++ +EA+ F + S V +EVTM+ +L+A S G + GK+
Sbjct: 216 KDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTL 275
Query: 139 -----------NIFLTTAIIEMYAK 152
++ L A+++MY K
Sbjct: 276 HEHIRRKDITCSLNLLNAMLDMYVK 300
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGP-----GAWILAKELQI 54
MI GY Q GR ++AL+ F ++ ++ V +EVT+V VL A + G W+ +
Sbjct: 288 MIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRN 347
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+LD S + ++ YA G I A+ D S A+I+GY G EALE F
Sbjct: 348 QLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKDTGSWNALINGYGVNGCAKEALEVF 407
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G +++TM VL+A + G ++ G+
Sbjct: 408 AMMLREGFEPNQITMTSVLSACNHCGLVEEGR 439
Score = 51.6 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 27/175 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY++ G EA + F + V D V++ G LA++L ++ + +
Sbjct: 195 VIVGYARCGDMVEARKLFDGM----VDRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKN 250
Query: 61 Y-SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE- 109
S +S Y+ G + AR + +S AMI GY Q GR ++AL+ F ++
Sbjct: 251 VISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRG 310
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ V +EVT+V VL A + ALD G ++ + A+++MYAK
Sbjct: 311 NVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAK 365
>gi|359492597|ref|XP_002282781.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Vitis vinifera]
Length = 724
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MISGY++ G +E F ++ L + D V MV +L + P G I A L+
Sbjct: 321 MISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTG 380
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ S Y+ G I + +S ++IS Q GR ++A+E F
Sbjct: 381 LCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFC 440
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYAK 152
++ G D +T+ +LA S G L FG ++N+ FL TA+++MY K
Sbjct: 441 QMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIK 498
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 28/176 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---GPGAWILAKELQIELD 57
MI Y Q G F+EA+ F +++ V + VT++ +L+A++ +++ +
Sbjct: 226 MIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIISLLSANAHLDSTHCYVIKTGFATDAS 285
Query: 58 LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ ++S YA G I A R+ VS AMISGY++ G +E F ++
Sbjct: 286 V----ITSLVCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAEKGNMGLVVECFTQM 341
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
L + D V MV +L + P + G ++ + +I MY+K
Sbjct: 342 LQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSK 397
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS Q GR ++A+E F ++ G D +T+ +L S G + L +
Sbjct: 422 VISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNN 481
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-------RDPV--SCKAMISGYSQAGRFNEALEPFG 106
LD+ + ++ Y GR+ A ++P + MISGY +G + AL +
Sbjct: 482 LDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYS 541
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ D +T + VL+A + G + GK
Sbjct: 542 EMQEQGLKPDRITFLGVLSACTHGGLVWEGK 572
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GYS+ G +ALE F ++ G + T+V ++ + P G I ++
Sbjct: 125 LICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSG 184
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL ++ TS YA ++ A + VS MI Y Q G F+EA+ F
Sbjct: 185 LDLDCRVKNALTSMYAKCADLQAAEVLFEEIFEKTEVSWNTMIGAYGQNGLFDEAMLVFK 244
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+++ V + VT++ +L+A++
Sbjct: 245 QMQKERVEVNYVTIISLLSANA 266
>gi|357511223|ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500915|gb|AES82118.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 467
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 74/153 (48%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWI--LAKELQ 53
MI GY G++N+AL F +++ GV + VTMV L+A + G WI + +
Sbjct: 181 MIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWIDDMVRRNG 240
Query: 54 IELDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
ELD+ ++ Y GR+ ++ + +I G + A EAL
Sbjct: 241 WELDV--ILGTALIDMYVKCGRVEEGLKVFCDMKEKNVFTLNVVIKGLALAKSVEEALLW 298
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++E GV DEVT+V VL+A S G ++ G+
Sbjct: 299 FNRMELDGVRADEVTLVTVLSACSHSGLVEKGR 331
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS MI GY G++N+AL F +++ GV + VTMV L+A + A++ G
Sbjct: 173 RDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCAIEMGVWI 232
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++ L TA+I+MY K
Sbjct: 233 DDMVRRNGWELDVILGTALIDMYVK 257
>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
Length = 1084
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q +AL F +++ G+ D + + ++ +G A ++ + +S
Sbjct: 417 MIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSG 476
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ + YA GRIR A +D ++ ++SG++Q+G EAL+ F
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ GV + T V L+AS+ + GK
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G EAL + ++ GV + VL SS A + A+ +
Sbjct: 114 MLSGYAQNGLGEEALWLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQGRSVHAQGYK 171
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
S+T + Y G RLA RD V+ +ISG++Q ALE
Sbjct: 172 QGFCSETFVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEI 231
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++S G+ D VT+ +LAA + G L G
Sbjct: 232 FEEMQSSGLSPDCVTISSLLAACASLGDLQKG 263
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG++Q+G EAL+ F +++ GV + T V L+AS+ K++ + +
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ S Y G A R+ VS +I+ SQ GR EAL+ F
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFD 637
Query: 107 KLESLGV 113
+++ G+
Sbjct: 638 QMKKEGL 644
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY + G +EA + + K+ L V DEVTM+ V++AS+ L ++L +
Sbjct: 227 IINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMG 286
Query: 57 -----------------------------DLSSYSLSSKTSR---YAHSGRIRLA----- 79
+++ ++ S T+ YA G + A
Sbjct: 287 LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFN 346
Query: 80 ----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+D V A+I G+ QA R EAL F ++++ V D++T+V L+A S GALD
Sbjct: 347 EMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDV 406
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G N+ L TA+++MYAK
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAK 435
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G+ QA R EAL F ++++ V D++T+V L+A S GA + + +D +
Sbjct: 359 LIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHN 418
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA G I+ A R+ ++ A+I G + G+ + A+ F
Sbjct: 419 LTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFS 478
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
++ S+G+ DE+T + VL+A G +D G+ + T+
Sbjct: 479 EMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS 517
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS ++I+GY + G +EA + + K+ L V DEVTM+ V++AS+ L G+
Sbjct: 219 RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKL 278
Query: 139 -----------NIFLTTAIIEMYAK 152
+ L A+++MY K
Sbjct: 279 HQSIEEMGLNLTVPLANALMDMYIK 303
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+G SQ GR EA+ F KL G+ D+ T+V V +A G L+ ++ ++
Sbjct: 331 IIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVK 390
Query: 58 LSSYS----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ S L+S Y GR+ LA R+ S ++I GY+ G+ +ALE
Sbjct: 391 VTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALEN 450
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F + GV ++VT V VL+A G ++ GK
Sbjct: 451 FQFMREAGVPPNQVTFVGVLSACVHGGMINEGK 483
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLA 79
G+ D T+ +V A S A+ L +L ++ + YS S S Y+ G + A
Sbjct: 254 GILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECA 313
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R S A+I+G SQ GR EA+ F KL G+ D+ T+V V +A
Sbjct: 314 CKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSL 373
Query: 131 GALDF--------------GKSNIFLTTAIIEMYAK 152
G L+ GKSNI + ++I+MY K
Sbjct: 374 GNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGK 409
>gi|255539985|ref|XP_002511057.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550172|gb|EEF51659.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 543
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 24/158 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
M+SGY+Q G+ +EAL F K+ G + VT ++++ A + G+ +IL +
Sbjct: 313 MLSGYTQNGQASEALFLFDKMRDSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSK 372
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
++I+++L + + YA G ++ A R+ S +ISGY G E
Sbjct: 373 MKIDMNLRN----ALMDMYAKCGDLKTAVEMFNDVHPSERNVSSWNVLISGYGMHGHGKE 428
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AL + +++ V + +T +L+A S G +D G++
Sbjct: 429 ALRLYSRMQEESVEPNHITFTSILSACSHAGLIDEGRN 466
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA---------SSGPGAWILAKE 51
MI+ Y Q + +EAL K++ G+ DEVTMV V +A + A+ + +
Sbjct: 212 MITAYEQGEKPDEALILLRKMQQHGLFPDEVTMVSVASAIGQLWDAKWAQSVHAYAIRRS 271
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
E+ +++ ++ +K S I R+ +S +M+SGY+Q G+ +EAL F
Sbjct: 272 FLKEIFVANSILAMHTKCGNMEKSCLIFDMMDERNVISWNSMLSGYTQNGQASEALFLFD 331
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K+ G + VT ++++AA + G+ G K ++ L A+++MYAK
Sbjct: 332 KMRDSGCEPNSVTALIMVAACAYLGSRHLGGKFHDFILDSKMKIDMNLRNALMDMYAK 389
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 14/140 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI Y+ AG E LE + + GV ++ T + A + + K ++ +
Sbjct: 111 MIRAYANAGLCFETLELYMLMRRAGVSSNNYTFPFIFKACASNSLLLQGKVAHGDAVKAD 170
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D Y ++ YA G+ R D V AMI+ Y Q + +EAL
Sbjct: 171 FDSDVYVKAALVDMYAKCGQFCDGRKIFDEMPVKDLVCWTAMITAYEQGEKPDEALILLR 230
Query: 107 KLESLGVHTDEVTMVVVLAA 126
K++ G+ DEVTMV V +A
Sbjct: 231 KMQQHGLFPDEVTMVSVASA 250
>gi|302142318|emb|CBI19521.3| unnamed protein product [Vitis vinifera]
Length = 768
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MISGY++ G +E F ++ L + D V MV +L + P G I A L+
Sbjct: 376 MISGYAEKGNMGLVVECFTQMLQLKMKPDAVAMVSILHGFTDPTFIGSGLGIHAYGLKTG 435
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ S Y+ G I + +S ++IS Q GR ++A+E F
Sbjct: 436 LCADCLVVNGLISMYSKFGDIETVFSLFSEMGEKQLISWNSVISACIQVGRTSDAMELFC 495
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYAK 152
++ G D +T+ +LA S G L FG ++N+ FL TA+++MY K
Sbjct: 496 QMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNNLDMEDFLETALVDMYIK 553
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS Q GR ++A+E F ++ G D +T+ +L S G + L +
Sbjct: 477 VISACIQVGRTSDAMELFCQMRMYGHSPDAITIASLLAGCSEVGFLQFGERLHNYVLRNN 536
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-------RDPV--SCKAMISGYSQAGRFNEALEPFG 106
LD+ + ++ Y GR+ A ++P + MISGY +G + AL +
Sbjct: 537 LDMEDFLETALVDMYIKCGRLESAERVFKSIKEPCLATWNTMISGYGLSGHEHRALSCYS 596
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G+ D +T + VL+A + G + GK
Sbjct: 597 EMQEQGLKPDRITFLGVLSACTHGGLVWEGK 627
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 35/165 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y Q G F+EA+ F +++ V + VT+++ A G IE
Sbjct: 312 MIGAYGQNGLFDEAMLVFKQMQKERVEVNYVTIIMCSYAGCG----------NIESAGLL 361
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y+L + R+ VS AMISGY++ G +E F ++ L + D V M
Sbjct: 362 YNLMPQ-------------RNLVSLTAMISGYAEKGNMGLVVECFTQMLQLKMKPDAVAM 408
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAKM 153
V +L + P + G ++ + +I MY+K
Sbjct: 409 VSILHGFTDPTFIGSGLGIHAYGLKTGLCADCLVVNGLISMYSKF 453
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 25/165 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GYS+ G +ALE F ++ G + T+V ++ + P G I ++
Sbjct: 230 LICGYSRNGYDYDALEVFVQMLREGFPPCQRTLVGLVPSCGRPDIIFQGKAIHGFGIKSG 289
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
LDL ++ TS YA S MI Y Q G F+EA+ F +++ V
Sbjct: 290 LDLDCRVKNALTSMYAK----------FSWNTMIGAYGQNGLFDEAMLVFKQMQKERVEV 339
Query: 116 DEVTMVVVLAASSGPGALD--------FGKSNIFLTTAIIEMYAK 152
+ VT +++ + +G G ++ + N+ TA+I YA+
Sbjct: 340 NYVT--IIMCSYAGCGNIESAGLLYNLMPQRNLVSLTAMISGYAE 382
>gi|357116134|ref|XP_003559839.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Brachypodium distachyon]
Length = 601
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+++GY + F +E F + S V D+VT V +++A+ GA L K L+
Sbjct: 323 LLAGYGRCREFAAVMELFNDMLSSRVRPDKVTAVTLISAAVSKGALNLGKSVHGWVLKEH 382
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ S+ Y G ++LA +D AMISG + G EAL+ F
Sbjct: 383 GTQDAFLASTLVDMYCKCGNVKLAYAVFEKALDKDVTLWTAMISGLAFHGHGTEALDLFW 442
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
+++ GV + VT+V VL+A S G LD G IF T
Sbjct: 443 NMQNEGVAPNGVTLVTVLSACSHAGLLDEG-CEIFYT 478
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 70/164 (42%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ Y++ G N A+ FG+ + D+++ ++ + G LDL+S
Sbjct: 261 LLDMYAKCGEMNTAMRVFGEAK----EKDDISWNTMIAGFANDGM----------LDLAS 306
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
RD +S +++GY + F +E F + S V D+VT
Sbjct: 307 KFFFDAP-----------CRDLISWNTLLAGYGRCREFAAVMELFNDMLSSRVRPDKVTA 355
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V +++A+ GAL+ GKS + FL + +++MY K
Sbjct: 356 VTLISAAVSKGALNLGKSVHGWVLKEHGTQDAFLASTLVDMYCK 399
Score = 37.0 bits (84), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 14/86 (16%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS----------SGP 130
D VSC M+SGY + G AL+ F + S + D+ V +L+ S
Sbjct: 182 DVVSCNIMLSGYVKGGCVVNALQLFRDMASREIGVDQYAAVALLSCCGRLKNALLGRSVH 241
Query: 131 GA----LDFGKSNIFLTTAIIEMYAK 152
G +D + L+ A+++MYAK
Sbjct: 242 GVVVRRMDIKDRGLILSNALLDMYAK 267
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 16/160 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I G+ Q G +AL F + V EVT L A + PG I + ++
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT 269
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D ++ YA G I+ AR D VS AMISGYS G EAL F
Sbjct: 270 FDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
K++ V D++T V VL+A + G LD G++ + T+ I
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQA--YFTSMI 367
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I GY+++ RF EA+E F +L V ++ T VL A + G I ++I
Sbjct: 110 LIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG 168
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ YA GR+ + R+ V+ +I G+ Q G +AL F
Sbjct: 169 LHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFL 228
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ V EVT L A + AL+ G +I +T A+I+MYAK
Sbjct: 229 NMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAK 286
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S +I GY+++ RF EA+E F +L V ++ T VL A + L+ G
Sbjct: 102 RNTISFVTLIQGYAESVRFLEAIELFVRLHR-EVLPNQFTFASVLQACATMEGLNLGNQI 160
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++F++ A++++YAK
Sbjct: 161 HCHVIKIGLHSDVFVSNALMDVYAK 185
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+++GY+Q G+ +A++ F +++ GV +E T+ L+ S ++L I+
Sbjct: 363 IVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAG 422
Query: 58 LSS--YSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
S + S+ YA G + ++RD VS +I GYSQ G+ +AL+ F
Sbjct: 423 QSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFE 482
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ G DEVT + VL+A S G ++ GK S I+ T IE YA M
Sbjct: 483 AMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM 535
Score = 38.9 bits (89), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL--TASSGP---GAWILAKELQIE 55
++SG+ ++ +L G + T + +L AS G G I + ++
Sbjct: 162 LLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSG 221
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ S+ +S + YA G A RD VS A+I+G+ G + L F
Sbjct: 222 INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFN 280
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + G + + T + +L + S +D GK N F+ TA+++MYAK
Sbjct: 281 QMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAK 338
>gi|225451435|ref|XP_002273841.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 474
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q NEALE F ++ G+ + T+ VL+A + G L + + + ++
Sbjct: 198 MISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKG 257
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA +G I +A R+ + AMI G + G EAL+ F
Sbjct: 258 IEVGVILGTALVHMYAKNGAILMAQKLFDTISERNTATWNAMICGLAVHGHAKEALDRFW 317
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI------IEMYAKM 153
KLE + +++T V VL+A G L G+ L + IE Y M
Sbjct: 318 KLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCM 370
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEAL 102
L+ LDL+ + ++ Y+ S +R AR D VS ++ MISGY+Q NEAL
Sbjct: 153 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 212
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
E F ++ G+ + T+ VL+A + G LD G+ + L TA++ MY
Sbjct: 213 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 272
Query: 151 AK 152
AK
Sbjct: 273 AK 274
>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Brachypodium distachyon]
Length = 902
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 14/128 (10%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQIE-----LDLSSYSLSSKTSRYAHSGRIRLA 79
GV D+ + L+A S GA + K+ + L ++ ++ + YA GR+ A
Sbjct: 26 GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85
Query: 80 R---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R D V +MISGY +AGRF EA+ F ++E +G D VT V V+ A +
Sbjct: 86 RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTAL 145
Query: 131 GALDFGKS 138
G L+ ++
Sbjct: 146 GRLEDART 153
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++SGY+Q G ++L F ++ S VH DEVT +L A S A KE+ I+
Sbjct: 577 IVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSG 636
Query: 58 LSSY--SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
SY + S+ Y+ G I + +D +MI G+++ G +EAL F
Sbjct: 637 FGSYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLF 696
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ + +DEVT + VL A + G + G+
Sbjct: 697 QKMQDSQIKSDEVTFLGVLIACAHAGLISEGR 728
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 76/170 (44%), Gaps = 43/170 (25%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +AGRF EA+ F ++E +G D VT V V+ A + G ++E
Sbjct: 103 MISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTALG--------RLE----- 149
Query: 61 YSLSSKTSRYAHSGRIRLARDP-----VSCKAMISGYS-QAGRFNEALEPFGKLESLGVH 114
R L R P V+ A+ISGY+ Q+G +E + + G+
Sbjct: 150 ------------DARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLW 197
Query: 115 TDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
T +L+A++ A G+ +N+F+ +++I +YAK
Sbjct: 198 PTRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAK 247
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G Q R +EA++ F ++ G+ T +L+ +G + I+ K++
Sbjct: 474 LIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKSG 533
Query: 54 -------IELDLSSYSLSSKTSRYAHSGRIRLA--RDPVSCKAMISGYSQAGRFNEALEP 104
+ + L L ++ A+ I + ++ V A++SGY+Q G ++L
Sbjct: 534 FLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLS 593
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ S VH DEVT +L A S AL GK S T+AII+MY+K
Sbjct: 594 FWRMRSYDVHPDEVTFASILKACSEMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSK 653
Score = 42.4 bits (98), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-----LDLSSYSLSSKT 67
EA++ F ++ LG+ DE T V VL A + + L +++Q +D S + ++
Sbjct: 284 EAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATL 343
Query: 68 SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
++ G I A+ D VS A++ G + EA+ + GV DEV
Sbjct: 344 DMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEV 403
Query: 119 TMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ V+ A S A + GK SN + +++I+ Y+K
Sbjct: 404 SFATVINACSNIRATETGKQIHCLAMKHSICSNHAVGSSLIDFYSK 449
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQ-AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
+ISGY+Q +G +E + + G+ T +L+A++ A+I +++
Sbjct: 170 VISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRH 229
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD + + SS + YA G I A ++ V AM++G + EA++ F
Sbjct: 230 GLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMF 289
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ LG+ DE T V VL A + + G+ +++F+ A ++M++K
Sbjct: 290 LYMKRLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSK 348
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++S Y++ G + E++ F K++ LG+ D T VL + K + ++L
Sbjct: 129 LMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLG 188
Query: 58 LSSYS--LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
SY+ ++S + Y G + AR D VS +MISG + G LE F
Sbjct: 189 FGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFI 248
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ +LGV D T+V VL A + G L G++ + +++MY+K
Sbjct: 249 QMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSK 306
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG + G LE F ++ +LGV D T+V VL A + G L + L ++
Sbjct: 230 MISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAG 289
Query: 58 LSSYSLSSKT--SRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
S + + T Y+ G + A + VS ++I+ + + G EA+ F
Sbjct: 290 FSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFD 349
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++S G+ D + V+ A + +LD G+ SN+ ++ A++ MYAK
Sbjct: 350 EMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAK 407
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYSQ NEAL+ F ++ + D+VTM VL A +G A +E+ +
Sbjct: 432 MIGGYSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKG 490
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + Y G + LA +D + MI+GY G EA+ F
Sbjct: 491 YFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFE 550
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ G+ +E + +L A + G L G
Sbjct: 551 KMRVAGIEPEESSFTSILYACTHSGLLKEG 580
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ + + G EA+ F +++S G+ D + V+ A + + +E+ + ++
Sbjct: 331 IIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNN 390
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S YA G + A ++ VS MI GYSQ NEAL+ F
Sbjct: 391 MGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFL 450
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D+VTM VL A +G AL+ G+ S++ + A+++MY K
Sbjct: 451 DMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVK 507
>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
Length = 730
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+ Y QAG EA+ F +++ V +E+ +V L A SG G I A+ L +
Sbjct: 74 IIAAYGQAGHCREAINLFQRMD---VEPNEMVIVSTLAACSGAKDLALGMAIHARILSPD 130
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L S + ++ + YA G I AR D VS AMI+ ++Q G +ALE
Sbjct: 131 LRKSVFVGTALLNMYAKCGAIEQARAVFDQMPHKDVVSWTAMITAFAQMGDCRQALETLE 190
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ V + VT V + A S LD G+ +I + A++ MYAK
Sbjct: 191 GMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAK 248
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ ++ + + A+ F + G+ D+V+ + VL+A S G K + +L+L++
Sbjct: 273 MIAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAA 332
Query: 61 Y----SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
LS + S YA G + A ++ VS AM++ Y+ G ++ALE
Sbjct: 333 VHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALEL 392
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ K+ + D V ++ V+ A S G + + I + A+I MYA+
Sbjct: 393 YDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYAR 452
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D VS +I+ Y QAG EA+ F +++ V +E+ +V LAA SG L G
Sbjct: 66 KDVVSWSCIIAAYGQAGHCREAINLFQRMD---VEPNEMVIVSTLAACSGAKDLALGMAI 122
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++F+ TA++ MYAK
Sbjct: 123 HARILSPDLRKSVFVGTALLNMYAK 147
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLES---------LGVHTDEVTMVVVLTASSGPGAWILAKE 51
M+ Y Q G EA+ F ++++ L D + V++L A +G G +
Sbjct: 477 MMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDCIMAVILLCAHAGLGKLAEGRC 536
Query: 52 LQIEL-----DLSSYSLSSKT------SRYAHSGRI---------RLARDPVSCKAMISG 91
+ EL ++ + S ++ T S YA G + ARD V+ ++++G
Sbjct: 537 IHAELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGDASAAFHHMRARDTVTWSSLVAG 596
Query: 92 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
Y+ G A+ + + GV D VT V +L + S G L
Sbjct: 597 YAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHAGLL 638
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 76/153 (49%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+G SQ GR EA+ F KL G+ D+ T+V V +A G L+ ++ ++
Sbjct: 336 IIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSLGNLELSLQMHKFVFQVK 395
Query: 58 LSSYS----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
++ S L+S Y GR+ LA R+ S ++I GY+ G+ +ALE
Sbjct: 396 VTGKSNILMLNSLIDMYGKCGRMDLAMKVFSNMGHRNVSSWTSLIVGYAMHGQVKQALEN 455
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F + GV ++VT V VL+A G ++ GK
Sbjct: 456 FQFMREAGVPPNQVTFVGVLSACVHGGMINEGK 488
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 28/156 (17%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLA 79
G+ D T+ +V A S A+ L +L ++ + YS S S Y+ G + A
Sbjct: 259 GILPDCYTLPIVFKALSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECA 318
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R S A+I+G SQ GR EA+ F KL G+ D+ T+V V +A
Sbjct: 319 CKVFEQNHNRKLGSWNAIIAGLSQGGRAKEAVNMFIKLRQSGLEPDDFTIVSVTSACGSL 378
Query: 131 GALDF--------------GKSNIFLTTAIIEMYAK 152
G L+ GKSNI + ++I+MY K
Sbjct: 379 GNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGK 414
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 16/164 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY++ G + ++ F ++E + + +TM +L A + A +E+ + +
Sbjct: 296 MIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNG 355
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+SL + Y G + LAR D VS MI+GY G +EA+ F
Sbjct: 356 FSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFN 415
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD--FGKSNIFLTTAIIE 148
++ + G+ DEV+ + +L A S G LD +G N+ IE
Sbjct: 416 EMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 459
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV-LTASSGPGAWILAKELQIELDLS 59
MISGY G + L+ F ++ LG++TD TMV V LT ++ LD+
Sbjct: 222 MISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNN------------CLLDMY 269
Query: 60 SYS--LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
S S L+S + G R VS +MI+GY++ G + ++ F ++E + +
Sbjct: 270 SKSGNLNSAIQVFETMGE----RSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNS 325
Query: 118 VTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+TM +L A + AL+ G+ + + A+++MY K
Sbjct: 326 ITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLK 372
Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 53/152 (34%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY++ G F E+L F ++ LG+ E A++L EL
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVES-----------------ARKLFDELG--- 212
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
RD +S +MISGY G + L+ F ++ LG++TD TM
Sbjct: 213 ------------------DRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATM 254
Query: 121 VVVLAASSGPGALDFGKSNIFLTTAIIEMYAK 152
V V + L +++MY+K
Sbjct: 255 VSV---------------ELTLNNCLLDMYSK 271
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G + GR +EA++ F + GV D VT++ V++A + G G W+ ++
Sbjct: 207 LIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQG 266
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ LAR VS +MI G++ GR +A+E F
Sbjct: 267 LERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFE 326
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ G D VT VL A S G D G L A + A+M
Sbjct: 327 AMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARM 373
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
A D VS A+I G + GR +EA++ F + GV D VT++ V++A + GAL G
Sbjct: 198 APDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMW 257
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 258 VHRLVVRQGLERNVRIANSLIDMYAR 283
>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
Length = 795
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ ++Q+G+ A++ ++ GV + VT V VL A + A+ KE+ + +
Sbjct: 291 MIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAG 350
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
YS S+ Y + G + AR D VS +MI+GYSQ AL F
Sbjct: 351 YSDDVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFR 410
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++E GV + VT V + A +G GAL G ++ + TA++ +Y K
Sbjct: 411 EMEVDGVQPNSVTFVSAIDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGK 468
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG------PGAWILAKELQI 54
+IS ++ AG F +A+ F K+ GV D +T +L SG G + + +Q
Sbjct: 87 LISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQT 146
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA-------RDP--VSCKAMISGYSQAGRFNEALEPF 105
+ ++ Y G + A +DP S +I+ Y+Q G E L
Sbjct: 147 GYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLL 206
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
++ GV D T VL A + GAL+ K + + TA+I +Y K
Sbjct: 207 SRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGK 266
>gi|147769957|emb|CAN70049.1| hypothetical protein VITISV_013371 [Vitis vinifera]
Length = 476
Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q NEALE F ++ G+ + T+ VL+A + G L + + + ++
Sbjct: 200 MISGYAQNYCSNEALELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKG 259
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA +G I +A R+ + AMI G + G EAL+ F
Sbjct: 260 IEVGVILGTALVHMYAKNGAILMAQKLFDXISERNTATWNAMICGLAVHGHAKEALDRFW 319
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI------IEMYAKM 153
KLE + +++T V VL+A G L G+ L + IE Y M
Sbjct: 320 KLEKEQIVPNDITFVGVLSACCHAGLLSVGRKIFHLMKRVYGIEPKIEHYGCM 372
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEAL 102
L+ LDL+ + ++ Y+ S +R AR D VS ++ MISGY+Q NEAL
Sbjct: 155 LKFGLDLNLHVVNGLVRAYSVSCDVRNARRVFDEVSERSLSIWTTMISGYAQNYCSNEAL 214
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
E F ++ G+ + T+ VL+A + G LD G+ + L TA++ MY
Sbjct: 215 ELFDQMIVEGLEPNGATLASVLSACAQSGCLDLGERIHVFMEEKGIEVGVILGTALVHMY 274
Query: 151 AK 152
AK
Sbjct: 275 AK 276
>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
Length = 630
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+ Y QAG EA+ F +++ V +E+ +V L A SG G I A+ L +
Sbjct: 74 IIAAYGQAGHCREAINLFQRMD---VEPNEMVIVSTLAACSGAKDLALGMAIHARILSPD 130
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L S + ++ + YA G I AR D VS AMI+ ++Q G +ALE
Sbjct: 131 LRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALETLE 190
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ V + VT V + A S LD G+ +I + A++ MYAK
Sbjct: 191 GMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAK 248
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+ G ++ALE + K+ + D V ++ V+ A S G LA++L + SS
Sbjct: 376 MLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSS 435
Query: 61 YSLSSKTSR-----YAHSGRIR--------------LARDPVSCKAMISGYSQAGRFNEA 101
+ L + Y G + +ARD V+ ++++GY+ G A
Sbjct: 436 FMLKIQIQNALINMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYA 495
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+ + + GV D VT V +L + S G L
Sbjct: 496 ILLYRDMHLEGVQPDSVTYVSILNSCSHAGLL 527
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D VS +I+ Y QAG EA+ F +++ V +E+ +V LAA SG L G
Sbjct: 66 KDVVSWSCIIAAYGQAGHCREAINLFQRMD---VEPNEMVIVSTLAACSGAKDLALGMAI 122
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++F+ TA++ MYAK
Sbjct: 123 HARILSPDLRKSVFVGTALLNMYAK 147
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ ++ + + A+ F + G+ D+V+ + VL+A S K + +L+L++
Sbjct: 273 MIAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAA 332
Query: 61 Y----SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
LS + S YA G + A ++ VS AM++ Y+ G ++ALE
Sbjct: 333 VHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALEL 392
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ K+ + D V ++ V+ A S G + + I + A+I MY +
Sbjct: 393 YDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSFMLKIQIQNALINMYTR 452
>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
Length = 610
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---SGP--GAWILAKELQIE 55
MI G++Q G +A F +++ V D T+V V+ A S P WI ++ +
Sbjct: 336 MILGFTQNGCSEDAERLFARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQ 395
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
LD Y L++ Y+ GR+ +AR ++ AMI GY G A+E F
Sbjct: 396 LDQDIYVLTALIDMYSKCGRVTIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFE 455
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G +E T + VLAA S G +D G+
Sbjct: 456 EMKGTGSLPNETTFLSVLAACSHAGLVDEGR 486
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 33/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---ELQIELD 57
MI GY++ G +EAL F ++ GV + ++ L A G A+ EL + +
Sbjct: 234 MIDGYAENGNASEALALFWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVG 293
Query: 58 LSS-----------YSLSSKTSRYAHS-GRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
L S YS + AH+ + + + +S AMI G++Q G +A F
Sbjct: 294 LKSNVSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLF 353
Query: 106 GKLESLGVHTDEVTMVVVLAAS---SGP------------GALDFGKSNIFLTTAIIEMY 150
+++ V D T+V V+ A S P LD +I++ TA+I+MY
Sbjct: 354 ARMQLENVKPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD---QDIYVLTALIDMY 410
Query: 151 AK 152
+K
Sbjct: 411 SK 412
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQ 53
+++GY++ G A+E ++ E G D +T+V VL A + G + A L+
Sbjct: 131 LVAGYARNGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPACADARVLGACREVHAFALR 190
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
LD ++ Y G + AR + VS AMI GY++ G +EAL
Sbjct: 191 AGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALAL 250
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
F ++ GV + ++ L A G LD KSN+ + A+I Y+K
Sbjct: 251 FWRMVQEGVDVTDAAVLAALQACRELGCLDEARRVHELLVRVGLKSNVSVMNALITTYSK 310
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY QAG EAL+ F ++++ V D V++ L+A + GA WI + +
Sbjct: 247 MISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTR 306
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPV-SCKAMISGYSQAGRFNEALEPFG 106
+ + S YA G + + R V + A+ISGY+ G EA+ F
Sbjct: 307 IRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFM 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ +G+ + +T VL A S G ++ GK
Sbjct: 367 EMQKMGIKPNVITFTTVLTACSYTGLVEEGK 397
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
++ S E + ++ LG D + ++ + + G + LA L +
Sbjct: 150 LLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPD 209
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ S +S YA +G++ +A ++ +S MISGY QAG EAL+ F ++++
Sbjct: 210 AVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQN 269
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V D V++ L+A + GAL+ GK + L +I+MYAK
Sbjct: 270 SDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAK 323
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q F EAL+ F ++ + G+ +D + ++A +G A +++ + +S
Sbjct: 487 LISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSG 546
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ S YA GRI+ A +D +S +ISG++Q+G +AL+ F
Sbjct: 547 YSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFA 606
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + T ++A++ + GK S+I ++ A+I YAK
Sbjct: 607 QMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAK 664
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISG++Q+G +AL+ F ++ + T ++A++ G I A ++
Sbjct: 588 LISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRG 647
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D ++ + YA G I AR + VS AMI+GYSQ G NEA+ F
Sbjct: 648 FDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFE 707
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ +G + VT V VL+A S G + G
Sbjct: 708 KMKQVGEMPNHVTFVGVLSACSHVGLVTKG 737
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ + + +E+ F +++ G+ ++ T +L + GA L +++ ++
Sbjct: 386 MLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTG 445
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S YA G++ A D VS A+ISGY+Q F EAL+ F
Sbjct: 446 FQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFK 505
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + G+ +D + ++A +G AL+ G+
Sbjct: 506 EMLNRGIQSDNIGFSSAISACAGIQALNQGR 536
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG +Q G + ALE F K++ + D VT+ +L+A + GA ++L I+
Sbjct: 285 LISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAG 344
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+SS + + Y + I+ A + V M+ + + +E+ F
Sbjct: 345 ISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFR 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ ++ T +L + GALD G+ N+++ + +I+MYAK
Sbjct: 405 QMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAK 462
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISG+SQ G EA+ F ++ + G+ VL+ + + + ++L +
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243
Query: 57 -DLSSY------SLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L +Y +L S+ + + ++ ++D VS ++ISG +Q G + ALE F
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ + D VT+ +L+A + GAL G+
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGE 334
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ + N L+ F + V E++ VL A SG I E QI +
Sbjct: 82 IISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAE-QIHARIIC 140
Query: 61 YSL-------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ L + YA +G I AR D VS AMISG+SQ G EA+
Sbjct: 141 HGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHL 200
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ + G+ VL+ + D G+ ++ A++ +Y++
Sbjct: 201 FCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSR 260
Query: 153 M 153
M
Sbjct: 261 M 261
>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
Length = 745
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---- 54
MI G++Q G N+AL+ F ++ E GV + T+ +L A + A + K++
Sbjct: 340 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 399
Query: 55 --ELDLSSYSLSSK-TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
+ D S+Y +++ + Y+ G + AR +S +M++GY GR +EAL
Sbjct: 400 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 459
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ F K+ G D++T +VVL A S G +D G S
Sbjct: 460 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 495
Score = 42.4 bits (98), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG----ALDF 135
+D VS AM++GYSQ+G F A E F + + D VT V+A S G AL+
Sbjct: 184 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 243
Query: 136 GKSNIF 141
+ IF
Sbjct: 244 FRQMIF 249
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y++ G A++ F +E D V+ ++ S G + A EL
Sbjct: 161 LIDAYAKCGLMENAVKVFNMME----FKDVVSWNAMVAGYSQSGNFKAAFEL-------- 208
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + + + D V+ A+I+GYSQ G +EAL F ++ G + VT+
Sbjct: 209 ---------FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTI 259
Query: 121 VVVLAASSGPGAL--------------------DFG--KSNIFLTTAIIEMYAK 152
+ VL+A + GA DFG ++ + A+I+MY+K
Sbjct: 260 ISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 313
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
+ YSQ G ++ + G++ LG+ D +L + G A+ + ++E D
Sbjct: 130 IFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFD 189
Query: 58 LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ S++ S A G I +R +P+S +MI GY + G F EAL+ F K+
Sbjct: 190 VVSWN--SMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLFIKM 247
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIFLT----TAIIEMYAK 152
+ + E TMV +L AS+ GAL G K+N+ L TAII+MY K
Sbjct: 248 QEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCK 303
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY + G F EAL+ F K++ + E TMV +L AS+ GA WI +
Sbjct: 227 MIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNN 286
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEALEPFG 106
L L++ +++ Y G I A + + C++ MI G + G EA+ F
Sbjct: 287 LQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCRSLSSWNSMIFGLAVNGCEKEAILVFK 346
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
LES + D ++ + VL A + +D G
Sbjct: 347 MLESSSLKPDCISFMAVLTACNHGAMVDEG 376
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
+++ Y Q G A++ F ++ E LG+ D V++V VL A + GAW K+ L+
Sbjct: 201 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 260
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + ++ YA G + A +D VS AM++GYSQ GRF++AL F
Sbjct: 261 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 320
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
K+ + + VT V+A + G L F ++F
Sbjct: 321 EKIREEKIELNVVTWSAVIAGYAQRG-LGFEALDVF 355
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 25/157 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G +Q G NEALE F ++ + D M T S A L+ + +
Sbjct: 448 LIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 503
Query: 61 YSLSSK------------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
Y L ++ Y+ SG + AR + VS ++++GY GR
Sbjct: 504 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 563
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL+ F +++ +G+ D VT VVVL A S G +D G
Sbjct: 564 EALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQG 600
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q G EAL+ F ++ G + VT+V +L+ + G + KE
Sbjct: 338 VIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWI 397
Query: 56 ------------------LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGR 97
+D+ S S K +R R V+ +I G +Q G
Sbjct: 398 LNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 457
Query: 98 FNEALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFGK-------------SNIFL 142
NEALE F ++ V + T+ L A + GAL FG+ + +F+
Sbjct: 458 ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 517
Query: 143 TTAIIEMYAK 152
+I+MY+K
Sbjct: 518 ANCLIDMYSK 527
>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
mitochondrial [Vitis vinifera]
gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
Length = 700
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISGY+Q G EALE F ++ S V+ D +T+V VL+A + GA+ + L I+
Sbjct: 410 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAG 469
Query: 58 L---SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L S Y ++ + YA G AR + ++ AMI GY G + +LE F
Sbjct: 470 LLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELF 529
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGAL 133
G + + +EV +L+A S G L
Sbjct: 530 GDMLKEKLEPNEVIFTTILSACSHSGML 557
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-IELDLS 59
MI GY+Q G EAL+ F + + VT VL+A + G+ + + + + + L
Sbjct: 310 MIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG 369
Query: 60 SYSLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
S + + + YA I AR D ++ ++ISGY+Q G EALE F +
Sbjct: 370 SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQ 429
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
+ S V+ D +T+V VL+A + GA G S ++++ TA++ YAK
Sbjct: 430 MRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAK 487
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY Q E L F ++ V ++ T+ ++TA + GA W+ ++
Sbjct: 209 MIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSG 268
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
DL+S+ ++ Y G IR A D VS AMI GY+Q G EAL+ F
Sbjct: 269 FDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFT 328
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+ + VT VL+A + G+L+ G+S + A+++MYAK
Sbjct: 329 DERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAK 385
>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
Length = 734
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG+SQ+GR + ++ F L S GV + V A + + + I+
Sbjct: 361 LISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRG 420
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L SY S+ + Y+ GR+ AR D V+ A+ISGY+ G EAL F
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFR 480
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+++S GV + VT + VL A S G
Sbjct: 481 RMQSYGVRPNAVTFIAVLTACSHSG 505
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++ GY+QA + ALE F ++ GV DE +VL W + K++ ++L
Sbjct: 260 LMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLG 319
Query: 58 LSS------------YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
S S Y GRI D VS A+ISG+SQ+GR + ++ F
Sbjct: 320 XESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPND-VSWSALISGFSQSGRLEDCIKIF 378
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L S GV + V A + L+ G S ++ +A++ MY+K
Sbjct: 379 TSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSK 437
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS Y++ G +A+ F +++ G+ + + +L + GP L K++ + +
Sbjct: 159 VISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQ 218
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ + Y G + A+ + V+ ++ GY+QA + ALE F
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFA 278
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV DE +VL D GK S + + T +++ Y K
Sbjct: 279 RMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVK 336
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G EAL F +++S GV + VT + VLTA S G AK+
Sbjct: 462 IISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY-------- 513
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
L S + Y ++ D C MI YS+AG EALE ++
Sbjct: 514 --LGSMSRDYG----VKPTIDHYDC--MIDTYSRAGLLXEALELINRM 553
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L ++ VS +IS Y++ G +A+ F +++ G+ + + +L + GP L+ GK
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208
Query: 138 ------------SNIFLTTAIIEMYAK 152
+NI + TAI MY +
Sbjct: 209 QMHSHVIRAQLNANITVETAICNMYVR 235
>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g40405-like [Glycine max]
Length = 616
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD V+ AMI+GY+Q GR EAL+ F ++ GV +EV+MV+VL+A + LD G
Sbjct: 207 RDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWV 266
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ + L TA+++MYAK
Sbjct: 267 HAYVERYKVRMTVTLGTALVDMYAK 291
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI+GY+Q GR EAL+ F ++ GV +EV+MV+VL+A + G W+ A + +
Sbjct: 215 MIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYK 274
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ ++ YA G + A R+ + + I G + G E+L+ F
Sbjct: 275 VRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFN 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ GV + +T + VL S G ++ G+ +
Sbjct: 335 DMKREGVQPNGITFISVLKGCSVVGLVEEGRKHF 368
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G+ + GR +EA++ F + V D VT++ V++A + G G W+ L+
Sbjct: 175 LIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQG 234
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G+++LA R VS +MI G + G EA+E F
Sbjct: 235 LERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFE 294
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
++ G D VT+ VL A S G + G L T + A+M
Sbjct: 295 EMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARM 341
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D VS A+I G+ + GR +EA++ F + V D VT++ V++A + GAL G
Sbjct: 168 DKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVH 227
Query: 137 --------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 228 RLVLRQGLERNVRVANSLIDMYAR 251
>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 602
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 88/179 (49%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG------PGAWILAKELQI 54
+ISG+S+ GR EA+ F ++ + + VT V V++A +G A + A +++
Sbjct: 173 IISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKL 232
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ +S Y+ GRI A RD + +MISGYSQ EAL+ F
Sbjct: 233 GFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLF 292
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + G++ + T+ +L A L G+ SN+F+ +A+++MY+K
Sbjct: 293 VEMRNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSK 351
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGYSQ EAL+ F ++ + G++ + T+ +L A IL + Q+ ++
Sbjct: 275 MISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILNACGSLT--ILQQGRQVHSLVAK 332
Query: 61 -------YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ +S+ Y+ G I AR + V +MI+GY+Q+GR E L
Sbjct: 333 MGSESNVFVVSALLDMYSKCGSIDEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGL 392
Query: 105 FGKLES-LGVHTDEVTMVVVLAASSGPGALDFG 136
F +L + G D + VL A + G LD G
Sbjct: 393 FERLVTEEGFTPDHICFTAVLTACNHAGFLDKG 425
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 29/168 (17%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKT 67
EALE F ++ + G + + L + + G G I A+ +Q + + + S+
Sbjct: 84 EALESFWRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 143
Query: 68 SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
YA I A+ D VS ++ISG+S+ GR EA+ F ++ + + V
Sbjct: 144 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 203
Query: 119 TMVVVLAASSGPGA--------------LDFGKSNIFLTTAIIEMYAK 152
T V V++A +G L FG F+ + +I+ Y+K
Sbjct: 204 TYVSVISACTGLETIFDQCALLHAHVVKLGFG-VKTFVVSCLIDCYSK 250
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ G+SQ+G EAL F ++++ + +VT VL A + + A ++ ++ S+
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 495
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G IR + RD +S A+ISGY+ G+ +ALE F
Sbjct: 496 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 555
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V ++++T V +L+ S G ++ G S
Sbjct: 556 RMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
M+S YS+ A F K+ G + + VL A+ + +L K ++
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + + YA G I+ AR D + MIS Y+Q+ + +A E F
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L V +E ++ VL A + LDFGK S++F+ A+++ YAK
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAK 411
>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
Length = 936
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY+ GR EALE + KL+ + D+VT + VL A + G I + ++
Sbjct: 535 LINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG 594
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ T+ Y+ G + AR VS M+ Y+Q G E L+
Sbjct: 595 LDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIR 654
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+E GV + +T V VL++ S G + G
Sbjct: 655 KMEQEGVKLNGITFVSVLSSCSHAGLIAEG 684
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL---TASSGPGAWILAKELQIELD 57
MI Y Q R ++AL+ F ++ G+ D V + +L T S L + E
Sbjct: 434 MIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESG 493
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L +S + YA +G + +A + + +I+GY+ GR EALE +
Sbjct: 494 LGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQ 553
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
KL+ + D+VT + VL A + +L GK S++ + A+ MY+K
Sbjct: 554 KLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSK 611
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYS-QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
M+ YS Q + A+E F ++ GV + +T + VL + P A K + + S
Sbjct: 130 MLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRES 189
Query: 60 SYSL-----SSKTSRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEALEPF 105
+SL ++ + Y G + AR D + C++ MIS YS + R EA F
Sbjct: 190 EHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIF 249
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G D VT + +L A P L GK ++F+ TA+I MYA+
Sbjct: 250 QRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYAR 308
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 33/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW------ILAKELQI 54
MIS YS F EAL F + GV + +T+V VL + G++ IL L +
Sbjct: 29 MISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSC---GSFRELRDGILVHALSL 85
Query: 55 ELDLSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYS-QAGRFNEAL 102
E +L ++ + Y G + A ++ V+ AM+ YS Q + A+
Sbjct: 86 ERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAV 145
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
E F ++ GV + +T + VL + P AL GK ++F+ TA++ Y
Sbjct: 146 ELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTY 205
Query: 151 AK 152
K
Sbjct: 206 TK 207
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 74 GRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
G+IR AR+ VS MIS YS F EAL F + GV + +T+V VL + L
Sbjct: 16 GKIR-ARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLNSCGSFREL 74
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
G N + TA++ MY K
Sbjct: 75 RDGILVHALSLERGFFQNTLVATALLNMYGK 105
>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 850
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 38/189 (20%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----EL 56
ISGY+Q G EAL ++ S G+ +EVT++ VL+ + GA + KE+ +
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPM 396
Query: 57 DL-------SSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRF 98
DL + ++ YA ++ +A RD V+ MI GYSQ G
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 99 NEALEPFGKL--ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLT 143
N+ALE ++ E + T+ L A + AL GK +F++
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVS 516
Query: 144 TAIIEMYAK 152
+I+MYAK
Sbjct: 517 NCLIDMYAK 525
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQ-----I 54
+I Y++ G+ ALE F K+ + G D++T+V VL + G L K+
Sbjct: 199 IIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTS 258
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
E+ + + + YA G + A +D VS AM++GYSQ GRF +A+ F
Sbjct: 259 EMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLF 318
Query: 106 GKLESLGVHTDEVTMVVVLA--ASSGPGALDFGKSNIFLTTAI 146
+++ + D VT ++ A G G G L++ I
Sbjct: 319 EQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 29/159 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
MI GYSQ G N+ALE ++ E + T+ L A + A + K++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIH----- 500
Query: 59 SSYSLSSKTS------------RYAHSGRIRLAR---------DPVSCKAMISGYSQAGR 97
+Y+L ++ + YA G I AR + V+ ++++GY G
Sbjct: 501 -AYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGY 559
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL F ++ +G D VT++VVL A S G +D G
Sbjct: 560 GEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 43/187 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y GR N+ L F + SL D T V A + + SS
Sbjct: 98 LIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISS--------VRCGDSS 149
Query: 61 YSLSSKT-------------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
++LS T + Y+ G + AR D VS ++I Y++ G+
Sbjct: 150 HALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKP 209
Query: 99 NEALEPFGKLES-LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTA 145
ALE F K+ + G D++T+V VL + G GK N+F+
Sbjct: 210 KMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNC 269
Query: 146 IIEMYAK 152
+++MYAK
Sbjct: 270 LVDMYAK 276
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ G+SQ+G EAL F ++++ + +VT VL A + + A ++ ++ S+
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 495
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G IR + RD +S A+ISGY+ G+ +ALE F
Sbjct: 496 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 555
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V ++++T V +L+ S G ++ G S
Sbjct: 556 RMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
M+S YS+ A F K+ G + + VL A+ + +L K ++
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + + YA G I+ AR D + MIS Y+Q+ + +A E F
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L V +E ++ VL A + LDFGK S++F+ A+++ YAK
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAK 411
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLTASSGPGA-----WILAKEL 52
+I+GY GRF EALE F ++ S VH + T+ VL A +G G W+ A
Sbjct: 226 IIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETGIWVHAYID 285
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ S YA G I A RD S +I G + G+ +AL
Sbjct: 286 RNRMNDDGSLDRSLIDMYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGLAMHGKAADAL 345
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
FG ++ G+ D+VT+V VL A + G +D G + +
Sbjct: 346 RMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDEGLHHFY 384
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 15/88 (17%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLAASSGPGALDFG 136
RD VS +I+GY GRF EALE F ++ S VH + T+ VLAA +G G L+ G
Sbjct: 218 RDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCPVHPNGPTISTVLAACAGAGCLETG 277
Query: 137 ------------KSNIFLTTAIIEMYAK 152
+ L ++I+MYAK
Sbjct: 278 IWVHAYIDRNRMNDDGSLDRSLIDMYAK 305
>gi|255538308|ref|XP_002510219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550920|gb|EEF52406.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
+ISG QAGR + A+E F +++ G + D +T+ +L+ S G ++IL +
Sbjct: 811 VISGCVQAGRASHAIELFCQMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNK 870
Query: 52 LQIE--LDLSSYSLSSKTSRYAHSGRI-RLARDPV--SCKAMISGYSQAGRFNEALEPFG 106
L++E + + + +K H+ R+ + P + AMISGYS G ++AL +
Sbjct: 871 LEMEDFVGTALIHMYTKCGSIVHAERVFKSIGKPCLATWNAMISGYSCYGFEHKALTCYS 930
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEM 149
+++ GV D++T + VLAA + G + G+ + T + +M
Sbjct: 931 EMQEQGVEPDKITFLGVLAACTHGGLIHEGRRYFQIMTKVYDM 973
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Y++AG +E F ++ L + D V M+ +L + P + I+
Sbjct: 710 IITSYAEAGNLGLVMESFSQMHQLNMKPDSVAMLSILHGIADPVHICIGHVFHGYAIKSG 769
Query: 58 LSSYSLSSK--TSRYAHSGRIR--------LARDP-VSCKAMISGYSQAGRFNEALEPFG 106
L +++L + S Y+ + + P +S ++ISG QAGR + A+E F
Sbjct: 770 LDTFNLVTNGLISMYSKFNNVEALFGLFSGMHEKPLISWNSVISGCVQAGRASHAIELFC 829
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G + D +T+ +L+ S G L FG+ F+ TA+I MY K
Sbjct: 830 QMKMHGCNPDAITIASLLSGCSQLGYLQFGERLHSYILRNKLEMEDFVGTALIHMYTK 887
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS+ G ALE F ++ LG + T+V +L + G I ++
Sbjct: 514 LICGYSRNGYDFSALELFVQMLKLGFCPRQTTLVGLLPSCGQLELVFQGKSIHGFGIKSG 573
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L L ++ TS YA G + A + VS MI Y Q G F+EA+ F
Sbjct: 574 LHLDPQVKNALTSMYAKCGDLEAAEYLFEEMMDKSVVSWNTMIGAYGQNGFFDEAMFVFK 633
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL------TTAIIEMYAK 152
++ GV +VT++ + +A++ P ++ + L T++I MYA+
Sbjct: 634 RMIGAGVEVSQVTIMSLPSANANPESIHCYTIKVGLADDASVVTSLICMYAR 685
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 16/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
+++ Y Q G A++ F ++ E LG+ D V++V VL A + GAW K+ L+
Sbjct: 220 IVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS 279
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L + ++ YA G + A +D VS AM++GYSQ GRF++AL F
Sbjct: 280 GLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLF 339
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
K+ + + VT V+A + G L F ++F
Sbjct: 340 EKIREEKIELNVVTWSAVIAGYAQRG-LGFEALDVF 374
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 25/157 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G +Q G NEALE F ++ + D M T S A L+ + +
Sbjct: 467 LIGGNAQHGEANEALELFSQM----LQPDNFVMPNAFTISCALMACARLGALRFGRQIHA 522
Query: 61 YSLSSK------------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
Y L ++ Y+ SG + AR + VS ++++GY GR
Sbjct: 523 YVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGE 582
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL+ F +++ + + D VT VVVL A S G +D G
Sbjct: 583 EALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQG 619
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 38/190 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q G EAL+ F ++ G + VT+V +L+ + G + KE
Sbjct: 357 VIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWI 416
Query: 56 ------------------LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGR 97
+D+ S S K +R R V+ +I G +Q G
Sbjct: 417 LNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGE 476
Query: 98 FNEALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFGK-------------SNIFL 142
NEALE F ++ V + T+ L A + GAL FG+ + +F+
Sbjct: 477 ANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFV 536
Query: 143 TTAIIEMYAK 152
+I+MY+K
Sbjct: 537 ANCLIDMYSK 546
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 71/171 (41%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GYSQ GRF++AL F K+ +E +IEL++ +
Sbjct: 322 MVTGYSQIGRFDDALGLFEKI----------------------------REEKIELNVVT 353
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S A+I+GY+Q G EAL+ F ++ G + VT+
Sbjct: 354 WS------------------------AVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389
Query: 121 VVVLAASSGPGALDFGK-------------------SNIFLTTAIIEMYAK 152
V +L+ + G L GK ++ + A+I+MY+K
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSK 440
>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
Length = 861
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 21/165 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
M+ G+++ G + F +L G D T+ V+ A K LQ+ L D+
Sbjct: 150 MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRD------LKNLQMALVDMY 203
Query: 60 SYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119
+ +R+ RD V+ MI GY++ G+ NE+L F K+ GV D+V
Sbjct: 204 VKCREIEDARFLFDKM--QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVA 261
Query: 120 MVVVLAASSGPGAL-------DFGKS-----NIFLTTAIIEMYAK 152
MV V+ A + GA+ D+ + ++ L TA+I+MYAK
Sbjct: 262 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAK 306
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 22/147 (14%)
Query: 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKELQIELDL 58
G NE+L F K+ GV D+V MV V+ A + GA +I K+ Q+++ L
Sbjct: 467 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 526
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ + +A G + AR + +S AMI+ Y G+ +AL+ F +
Sbjct: 527 GT----AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMML 582
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG 136
G+ +++T+V +L A S G ++ G
Sbjct: 583 RSGILPNKITLVSLLYACSHAGLVEEG 609
>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
Length = 852
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---- 54
MI G++Q G N+AL+ F ++ E GV + T+ +L A + A + K++
Sbjct: 447 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 506
Query: 55 --ELDLSSYSLSSK-TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
+ D S+Y +++ + Y+ G + AR +S +M++GY GR +EAL
Sbjct: 507 HHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 566
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ F K+ G D++T +VVL A S G +D G S
Sbjct: 567 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 602
Score = 42.4 bits (98), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG----ALDF 135
+D VS AM++GYSQ+G F A E F + + D VT V+A S G AL+
Sbjct: 291 KDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNV 350
Query: 136 GKSNIF 141
+ IF
Sbjct: 351 FRQMIF 356
Score = 39.3 bits (90), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y++ G A++ F +E D V+ ++ S G + A EL
Sbjct: 268 LIDAYAKCGLMENAVKVFNMME----FKDVVSWNAMVAGYSQSGNFKAAFEL-------- 315
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + + + D V+ A+I+GYSQ G +EAL F ++ G + VT+
Sbjct: 316 ---------FKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTI 366
Query: 121 VVVLAASSGPGAL--------------------DFG--KSNIFLTTAIIEMYAK 152
+ VL+A + GA DFG ++ + A+I+MY+K
Sbjct: 367 ISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 420
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S + +A++ RI LAR D VS AMI GY + RF E L F ++
Sbjct: 308 SWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSN 367
Query: 113 VHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
V DE TMV +L A + GAL+ G K++ F+ A+I+MY K
Sbjct: 368 VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFK 419
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
MI GY + RF E L F ++ V DE TMV +LTA + GA L + + +D +
Sbjct: 343 MIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKNK 402
Query: 60 ----SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ Y G + A +D + AMI G + G EAL F
Sbjct: 403 IKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFS 462
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V DE+T + V+ A + G + GK
Sbjct: 463 YMLEASVTPDEITYIGVMCACTHVGLVAKGK 493
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 78/152 (51%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ G+SQ+G EAL F ++++ + +VT VL A + + A ++ ++ S+
Sbjct: 436 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 495
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G IR + RD +S A+ISGY+ G+ +ALE F
Sbjct: 496 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 555
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V ++++T V +L+ S G ++ G S
Sbjct: 556 RMNKSNVESNDITFVALLSVCSSTGLVNHGLS 587
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
M+S YS+ A F K+ G + + VL A+ + +L K ++
Sbjct: 234 MVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTL 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + + YA G I+ AR D + MIS Y+Q+ + +A E F
Sbjct: 294 NDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFL 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L V +E ++ VL A + LDFGK S++F+ A+++ YAK
Sbjct: 354 RLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAK 411
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 23/157 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWIL-----AK 50
MI GY+Q G+ NEAL+ F ++ DEVT+V+VL+A + G W+ ++
Sbjct: 222 MIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR 281
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
+Q+ + ++ ++ Y G + A +D V AMI+GY+ G +A
Sbjct: 282 CVQLNVRVA----TALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKA 337
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
LE F +L G+ ++T + +L A S G ++ G+S
Sbjct: 338 LEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRS 374
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D + AMI GY+Q G+ NEAL+ F ++ DEVT+V+VL+A + G ++ GK
Sbjct: 214 KDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWL 273
Query: 139 ------------NIFLTTAIIEMYAK 152
N+ + TA+++MY K
Sbjct: 274 HSYVKNSRCVQLNVRVATALVDMYCK 299
>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
Length = 762
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG+SQ+GR + ++ F L S GV + V A + + + I+
Sbjct: 361 LISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRG 420
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L SY S+ + Y+ GR+ AR D V+ A+ISGY+ G EAL F
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFR 480
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+++S GV + VT + VL A S G
Sbjct: 481 RMQSYGVRPNAVTFIAVLTACSHSG 505
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++ GY+QA + ALE F ++ GV DE +VL G W + +++ ++L
Sbjct: 260 LMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLG 319
Query: 58 LSS------------YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
S S Y GRI D VS A+ISG+SQ+GR + ++ F
Sbjct: 320 AESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPND-VSWSALISGFSQSGRLEDCIKIF 378
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L S GV + V A + L+ G S ++ +A++ MY+K
Sbjct: 379 TSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSK 437
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS Y++ G +A+ F +++ G+ + + +L + GP L K++ + +
Sbjct: 159 VISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQ 218
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ + Y G + A+ + V+ ++ GY+QA + ALE F
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFA 278
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV DE +VL G D G+ S + + T +++ Y K
Sbjct: 279 RMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVK 336
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G EAL F +++S GV + VT + VLTA S G AK+
Sbjct: 462 IISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY-------- 513
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
L S + Y ++ D C MI YS+AG EALE ++
Sbjct: 514 --LGSMSRDYG----VKPTIDHYDC--MIDTYSRAGLLQEALELINRM 553
Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L ++ VS +IS Y++ G +A+ F +++ G+ + + +L + GP L+ GK
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208
Query: 138 ------------SNIFLTTAIIEMYAK 152
+NI + TAI MY +
Sbjct: 209 QIHSHVIRAQLNANITVETAICNMYVR 235
>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
Length = 806
Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MIS Y+ G +ALE F ++ + GV +E+T VL A GAWI + ++
Sbjct: 427 MISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESG 486
Query: 56 LDLSS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S ++ +S YA G + A +D V+ +I+ Q+G AL+ +
Sbjct: 487 LDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLY 546
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+H D T+ +L A + G L G + + A+ MYAK
Sbjct: 547 DRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAK 605
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+ Q+G AL+ + ++ G+H D T+ +L A + G + ++ L+ +
Sbjct: 529 IIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSK 588
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ ++ + YA G + RL R D + +M++ +SQ G + ALE +
Sbjct: 589 LEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYA 648
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ES GV +EVT + VL + S G + G+
Sbjct: 649 EMESEGVRPNEVTFIPVLISCSQAGLVAEGR 679
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-WILAKELQIE---- 55
MI+ +Q G ++ +++ F + + G++ +E T V++A + G IL + +I
Sbjct: 321 MIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQIT 380
Query: 56 ---LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEA 101
+D +S + YA SG + AR+ VS MIS Y+ G +A
Sbjct: 381 ASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQA 440
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIE 148
LE F ++ + GV +E+T VLAA G L G S+ F ++++
Sbjct: 441 LEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVD 500
Query: 149 MYAK 152
MYAK
Sbjct: 501 MYAK 504
>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 783
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI G +Q R EA++ F +L G+ +E T V ++T +S + ++ ++
Sbjct: 512 MIFGLAQNERGEEAVKLFARLRVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAG 571
Query: 57 -DLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
D + ++ YA G I L +D + +MIS Y+Q G EAL FG
Sbjct: 572 ADSDPHISNALIDMYAKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFG 631
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+E GV + VT V VL+A + G +D G
Sbjct: 632 MMEGAGVEPNYVTFVSVLSACAHAGLVDEG 661
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 32/183 (17%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHT------DEVTMVVVLTASSGPGAWILAKEL--- 52
IS Y+Q GR ++AL F S G + +E + L A + A +++
Sbjct: 103 ISMYAQHGREDDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGV 162
Query: 53 --QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
++ LD + + ++ + YA +GRI A R+PV+ A+I+GYSQAG+ A
Sbjct: 163 AAKLGLDANVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVA 222
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEM 149
LE FG++ GV D + +A SG G ++ G+ S+ + A+I++
Sbjct: 223 LELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDL 282
Query: 150 YAK 152
Y K
Sbjct: 283 YCK 285
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----------AWILA 49
+I+GYSQAG+ ALE FG++ GV D + +A SG G A+ A
Sbjct: 209 VITGYSQAGQAGVALELFGRMGLDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTA 268
Query: 50 KELQIELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
E + + L K SR + R+ + R+ VS MI+GY Q EA+ F
Sbjct: 269 AESDASVVNALIDLYCKCSRLLLARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFW 328
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L G D +L + A+ G+ S+ ++ A+I+MYAK
Sbjct: 329 QLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAK 386
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 26/179 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
MI+GY Q EA+ F +L G D +L A+ G + A ++ +
Sbjct: 310 MIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVHAHVIKAD 369
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ Y ++ YA + AR D +S AMI GY++ G A+E FG
Sbjct: 370 LESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDLTGAVEIFG 429
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAKM 153
K+ + +T V +L SS L+ K +++ +A+I++Y+K
Sbjct: 430 KMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAGSALIDVYSKF 488
>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
lyrata]
Length = 1347
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 24/175 (13%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDL 58
IS Y+ G EAL F ++ + + D T+ +++A G L K++ I D+
Sbjct: 935 ISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDV 994
Query: 59 SS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKL 108
S + +S Y+ SG + LA R V+ +M+ G+SQ G EA+ F +
Sbjct: 995 SDEFVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYM 1054
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
+ ++VT + V+ A S G+L+ G+ ++F TA+I+MYAK
Sbjct: 1055 YHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIKDLFTDTALIDMYAK 1109
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ G+SQ G EA+ F + + ++VT + V+ A S G W+ K +
Sbjct: 1034 MLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCG 1093
Query: 56 L-DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ DL ++ ++ YA G + A R VS +MI+ Y GR A+ F
Sbjct: 1094 IKDL--FTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTF 1151
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G +EV + VL+A G+++ GK
Sbjct: 1152 NQMVESGTKPNEVVFMNVLSACGHSGSVEEGK 1183
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-------- 51
MIS Y++ G F+E AL F ++ G+ + VT+ +L++ G L +E
Sbjct: 832 MISSYNR-GEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNG---LIREGKSVHGFA 887
Query: 52 LQIELDLSSYSLS-SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
++ ELD + SLS + YA GR+ R+ V + IS Y+ G EA
Sbjct: 888 IRRELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEA 947
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMY 150
L F ++ + + D T+ +++A G + GK S+ F+ ++I+MY
Sbjct: 948 LCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQNSVIDMY 1007
Query: 151 AK 152
+K
Sbjct: 1008 SK 1009
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-----DLSSYSLSSKT 67
+AL F + GV D VTM+ V+ + G +A+ + ++ D +S
Sbjct: 743 KALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLL 802
Query: 68 SRYAHSGRI--------RLAR-DPVSCKAMISGYSQAGRFNE-ALEPFGKLESLGVHTDE 117
+ Y+ G + ++A+ + VS AMIS Y++ G F+E AL F ++ G+ +
Sbjct: 803 TMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNR-GEFSEKALRSFSEMLKSGIEPNL 861
Query: 118 VTMVVVLAASSGPGALDFGKS 138
VT+ +L++ G + GKS
Sbjct: 862 VTLYSILSSCGLNGLIREGKS 882
>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
MI GY+Q G N+AL+ F ++ + + + T+ L A + G EL++ L
Sbjct: 451 MIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLG------ELRLGRQL 504
Query: 59 SSYSLSSKT------------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGR 97
+Y+L ++ Y+ SG I AR + VS ++++GY GR
Sbjct: 505 HAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGR 564
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL F +++ LG D +T +VVL A S G +D G
Sbjct: 565 GEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQG 603
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 38/190 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GY+Q G EAL+ F +++ G+ + VT+ +L+ + GA + K+
Sbjct: 341 VIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNI 400
Query: 54 IELDLSSYS-----LSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGR 97
+ L+ + L+ YA R+AR + V+ MI GY+Q G
Sbjct: 401 LNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGE 460
Query: 98 FNEALEPFGKL--ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFL 142
N+AL+ F ++ + + + T+ L A + G L G+ +++
Sbjct: 461 ANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYV 520
Query: 143 TTAIIEMYAK 152
+I+MY+K
Sbjct: 521 GNCLIDMYSK 530
Score = 43.1 bits (100), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 40/171 (23%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y++ + NEA + F ++ D V+ ++T S G
Sbjct: 275 LVSMYAKCSKMNEANKVFEGIKK----KDVVSWNAMVTGYSQIG---------------- 314
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S S S + + D ++ A+I+GY+Q G EAL+ F +++ G+ + VT+
Sbjct: 315 -SFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTL 373
Query: 121 VVVLAASSGPGALDFGK-------------------SNIFLTTAIIEMYAK 152
+L+ + GAL +GK ++ + +I+MYAK
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAK 424
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY GR EAL F +++ LG D +T +VVL A S G + + +
Sbjct: 555 LMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGM-VDQGMIYFHDMVKG 613
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ ++ YA M+ +AGR NEA+E ++++ + V
Sbjct: 614 FGITPGAEHYA---------------CMVDLLGRAGRLNEAMEL---IKNMSMEPTAVVW 655
Query: 121 VVVLAASSGPGALDFGK 137
V +L+AS ++ G+
Sbjct: 656 VALLSASRIHANIELGE 672
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 32/176 (18%)
Query: 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIELDLSSYSL 63
G ++ L + +++ LG D T VL A S GA + A L + +
Sbjct: 106 GLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFIC 165
Query: 64 SSKTSRYAHSGRI------------RLARDPVSCKAMISGYSQAGRFNEALE---PFGKL 108
+S + Y G + R D VS ++++ Y Q G+ AL G
Sbjct: 166 NSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNH 225
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
SL + D +T+V +L A + AL GK ++F+ A++ MYAK
Sbjct: 226 YSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 281
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q NEA+ F + V DE+ ++ VL+A + GA L + + ++ +
Sbjct: 232 LISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHN 291
Query: 61 YSL-------SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEP 104
L +S YA SG I AR ++ +ISG + G EAL+
Sbjct: 292 NKLRKTVPLCNSLIDMYAKSGDISKARQLFQNMKHKTIITWTTVISGLALHGFGKEALDV 351
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F +E V +EVT++ VL+A S G ++ G+ NIF
Sbjct: 352 FSCMEKARVKPNEVTLIAVLSACSHVGLVELGR-NIF 387
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +ISGY+Q NEA+ F + V DE+ ++ VL+A + GAL G
Sbjct: 224 RDVVSWTTLISGYTQTHSPNEAITLFRIMLLQNVQPDEIAILAVLSACADLGALQLGEWI 283
Query: 137 -----------KSNIFLTTAIIEMYAK 152
+ + L ++I+MYAK
Sbjct: 284 HNYIEKHNNKLRKTVPLCNSLIDMYAK 310
>gi|255549567|ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544990|gb|EEF46504.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 655
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 18/158 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG---VHTDEVTMVVVLTASSGPGAWILAKELQ---I 54
MI+ Y Q+G +E F ++ +G + D V++V VL A + G W+ K++ I
Sbjct: 214 MIAVYLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHGFAI 273
Query: 55 ELDL--SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
L + +S YA G + +A +D VS AM++GYSQ G+F +AL
Sbjct: 274 RYGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQHKDVVSWNAMVTGYSQIGKFEDALG 333
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
F K+ + D V+ V+A + G L + N+F
Sbjct: 334 LFEKMREEKIQLDVVSWSAVIAGYAQRG-LGYEALNVF 370
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 39/191 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+GY+Q G EAL F +++ G+ +EVT+V +L+ + GA + KE
Sbjct: 353 VIAGYAQRGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCV 412
Query: 54 IELDLSS-----YSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGR 97
+ D S +++ Y I + R+ V+ AMI GY+Q G
Sbjct: 413 LNFDRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKDRNVVTWTAMIGGYAQHGE 472
Query: 98 FNEALEPFGKL---ESLGVHTDEVTMVVVLAASSGPGALDFGK-------------SNIF 141
N+ALE F ++ + V + T+ L A + AL FG+ ++
Sbjct: 473 ANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLRDQYDCDVLY 532
Query: 142 LTTAIIEMYAK 152
+ +I+MY+K
Sbjct: 533 VANCLIDMYSK 543
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLTASSGPGAWILAKEL----- 52
MI GY+Q G N+ALE F ++ + V + T+ L A + A +++
Sbjct: 463 MIGGYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVL 522
Query: 53 --QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEA 101
Q + D+ Y + Y+ SG + AR + VS ++++GY G EA
Sbjct: 523 RDQYDCDVL-YVANCLIDMYSKSGDMDAARLVFDNMKHRNTVSWTSLMTGYGMHGHGEEA 581
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ F ++ G+ +D +T +VVL A S G +D G
Sbjct: 582 IKVFDEMRREGLVSDGITFLVVLYACSHSGMVDEG 616
>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 805
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MISGY G L + ++ LG+ D T++ VL + G L K
Sbjct: 222 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSS 281
Query: 51 -ELQIELDLSSYSLSSKTSRYAHSGRIRL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
E +I + + SK G +R+ R+ VS +MI+GY++ G + A+
Sbjct: 282 FERRINFSNTLLDMYSKCGDL--DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D V + +L A + G+LD GK SN+F+ A+++MYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSR-----YAHSGRIRLAR--- 80
D TM +L A + A KE+ + + YS + Y G + LAR
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 490
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D VS MI+GY G NEA+ F ++ G+ DEV+ + +L A S G L+
Sbjct: 491 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 550
Query: 135 FG------KSNIFLTTAIIEMYAKM 153
G N F +E YA M
Sbjct: 551 QGWRFFYIMKNDFNIEPKLEHYACM 575
Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AW----ILAKEL 52
MI+GY G NEA+ F ++ G+ DEV+ + +L A S G W I+ +
Sbjct: 504 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 563
Query: 53 QIELDLSSYS 62
IE L Y+
Sbjct: 564 NIEPKLEHYA 573
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MISGY G L + ++ LG+ D T++ VL + G L GK+
Sbjct: 214 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV 273
Query: 139 -----------NIFLTTAIIEMYAK 152
I + +++MY+K
Sbjct: 274 HSLAIKSSFERRINFSNTLLDMYSK 298
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
++S + + GRF EAL G+++ V +E T+ VL A GA W L +E
Sbjct: 185 LVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGRLGAARAGKAVHGWYLRRE 241
Query: 52 LQIELDLSSYSLS--SKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++L + + L K + + R+ L RD +S MISG Q ++ALE F
Sbjct: 242 SDLKLIVGNAVLDMYVKCEKLDLARRVFDRLLVRDVISWTIMISGLVQCKLPSKALEVFN 301
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ V D+V + VL+A + GAL+ G+ ++ + T++++MYAK
Sbjct: 302 EMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAK 359
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISG Q ++ALE F +++ V D+V + VL+A + GA W+ +
Sbjct: 283 MISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTSLGALESGRWVHEYIERKG 342
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + +S YA G + + ++ S A+I+G++ G EALE F
Sbjct: 343 IEWDVHVGTSLVDMYAKCGCLETSLSIFRKMPLKNLSSWNALINGFALHGHGREALEHFD 402
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + G+ +EV+ ++VL A G + G
Sbjct: 403 RMVASGLAPNEVSFIIVLGACCHSGLVQEG 432
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+RD VS A++S + + GRF EAL G+++ V +E T+ VL A GA GK+
Sbjct: 176 SRDVVSWTALVSAFVRGGRFAEALVLVGQMD---VVPNEGTLACVLVACGRLGAARAGKA 232
Query: 139 ------------NIFLTTAIIEMYAK 152
+ + A+++MY K
Sbjct: 233 VHGWYLRRESDLKLIVGNAVLDMYVK 258
>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1182
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I+GY Q G F EAL+ F K+ V +E TMV L A S G WI +
Sbjct: 381 IIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDN 440
Query: 56 LDLSSYSLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ L+S YA G I ++ R AMI G++ G+ EA+ F
Sbjct: 441 IKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHGKPEEAINVF 500
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ V ++VT + +L A S + GKS
Sbjct: 501 EKMKVEKVSPNKVTFIALLNACSHGYMVKEGKS 533
Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 56/118 (47%), Gaps = 21/118 (17%)
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+D YS ++ Y SG + LA RD VS +I+GY Q G F EAL+ F
Sbjct: 340 VDRDFYSWNTMIGAYVGSGNMVLAKELFDEMHERDVVSWSTIIAGYVQVGCFMEALDFFH 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K+ V +E TMV LAA S ALD GK N L ++I+MYAK
Sbjct: 400 KMLQSEVKPNEYTMVSALAACSNLVALDQGKWIHVYIRRDNIKMNDRLLASLIDMYAK 457
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 39/184 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ Y + G +++A+ F +++S GV D T+ ++ A + + L D+ S
Sbjct: 368 IIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACA------CSSSLDKGRDVHS 421
Query: 61 YSL-----------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNE 100
Y + ++ + YA G + AR D VS MI GYSQ NE
Sbjct: 422 YVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNE 481
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
ALE F ++ D++TM VL A +G ALD G+ S++ + A+++
Sbjct: 482 ALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVD 540
Query: 149 MYAK 152
MYAK
Sbjct: 541 MYAK 544
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GYSQ NEALE F ++ D++TM VL A +G A +E+ +
Sbjct: 469 MIGGYSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRG 527
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + YA G + LA +D +S MI+GY G NEA+ F
Sbjct: 528 YFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFN 587
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ DE + +L A S G L+ G
Sbjct: 588 EMRIAGIEPDESSFSAILNACSHSGLLNEG 617
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++S Y++ G F E++ F K++ LGV + T VL + G K + ++L
Sbjct: 166 LMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLG 225
Query: 58 LSSYS--LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S + ++S + Y G + A D VS +MI+G G LE F
Sbjct: 226 FGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFI 285
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ LGV D T+V VL A + G L G++ + + +++MY+K
Sbjct: 286 QMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSK 343
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY Q GR EA F K+++ V D TMV ++ A S A ++ +
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L E + + + YA GRI L+R D VS MI+GY G EA
Sbjct: 357 LASETSICN----ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEAT 412
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +LG D VT + +L+A S G + GK
Sbjct: 413 ALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK 447
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA +G I A +D VS A++SGY Q GR EA F K+++ V
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323
Query: 115 TDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
D TMV ++ A S AL G+ S + A+I+MYAK
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAK 373
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G + GR +EA+ F + GV D VT++ V++A + G G W+ ++
Sbjct: 173 LIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQG 232
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ LAR VS +MI G++ GR +A+E F
Sbjct: 233 LERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFE 292
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ G D VT VL A S G D G L A + A+M
Sbjct: 293 AMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARM 339
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
A D VS A+I G + GR +EA+ F + GV D VT++ V++A + GAL G
Sbjct: 164 APDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMW 223
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 224 VHRLVVRQGLERNVRIANSLIDMYAR 249
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+G++ GR +EAL F ++ + GV D T+V +L+AS+ GA L + L++
Sbjct: 202 VINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVG 261
Query: 56 LDLSSYSLSSKTSRYAHSGRI-RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
L +S+ +S YA I R+ VS ++I G + G EALE F ++E G+
Sbjct: 262 LRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLV 321
Query: 115 TDEVTMVVVLAASSGPGALDFG 136
E+T V VL A S G LD G
Sbjct: 322 PSEITFVGVLYACSHCGMLDEG 343
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD V+ ++I+G++ GR +EAL F ++ + GV D T+V +L+AS+ GAL+ G
Sbjct: 194 RDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRV 253
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ N +T +++++YAK
Sbjct: 254 HVYLLKVGLRENSHVTNSLLDLYAK 278
>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
Length = 716
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 16/141 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+ Y+Q G EAL F +++ V V+ L A + GA +E+ +E +
Sbjct: 305 MIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAN 361
Query: 58 LSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L+S + +S S YA G + AR D SC AMI+ ++Q GR +AL + K
Sbjct: 362 LASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRK 421
Query: 108 LESLGVHTDEVTMVVVLAASS 128
+E G+ D +T V VL A S
Sbjct: 422 MEQEGIPADGITFVSVLVACS 442
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 33/180 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MIS Y QAG EALE F ++ + + + T +L A G G L K ++ L+
Sbjct: 203 MISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGN--LEKGRKVHRHLA 260
Query: 60 SYSLSSKT-------SRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALE 103
S + + Y G AR+ +S +MI+ Y+Q G EAL
Sbjct: 261 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 320
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------SNIF---LTTAIIEMYAK 152
F +++ V V+ L A + GALD G+ +N+ + T+++ MYA+
Sbjct: 321 LFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEANLASPQMETSLLSMYAR 377
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
+I+ Y++AGR A+ + ++ + GV + VT L + ILA +
Sbjct: 102 IIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASK 161
Query: 52 LQIE--LDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + L S ++ K + ++ AR+ S AMIS Y QAG EALE F
Sbjct: 162 VPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFS 221
Query: 107 KLESL-GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + + + T +L A G G L+ G+ +N+ + A++ MY K
Sbjct: 222 RMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGK 280
Score = 38.5 bits (88), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---------- 137
MI+ + GR +ALE +G++E G+ D+ + ++AA + AL+ G+
Sbjct: 1 MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60
Query: 138 --SNIFLTTAIIEMYAK 152
++I L TA+++MYAK
Sbjct: 61 FRTDIPLETALLQMYAK 77
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY Q GR EA F K+++ V D TMV ++ A S A ++ +
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 356
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L E + + + YA GRI L+R D VS MI+GY G EA
Sbjct: 357 LASETSICN----ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEAT 412
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +LG D VT + +L+A S G + GK
Sbjct: 413 ALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK 447
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA +G I A +D VS A++SGY Q GR EA F K+++ V
Sbjct: 264 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 323
Query: 115 TDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
D TMV ++ A S AL G+ S + A+I+MYAK
Sbjct: 324 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAK 373
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G + +E F K+ GV D TMV V A + G +L K L S
Sbjct: 323 MISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLH------S 376
Query: 61 YSLSSKT------------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFN 99
YS+ + T Y+ G + A + VS +MI+GY + G +
Sbjct: 377 YSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSD 436
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
A++ F +++S GV D + +L A + G L GK +N F++ A+
Sbjct: 437 GAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALT 496
Query: 148 EMYAK 152
+MYAK
Sbjct: 497 DMYAK 501
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YS +G + E++ F ++ LG+ + T +L + +++ +L
Sbjct: 222 MISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLG 281
Query: 58 LSSYS--LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+SY+ ++S S Y ++R A RD +S +MISGY + G + +E F
Sbjct: 282 FNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFI 341
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ GV D TMV V A + G L GK
Sbjct: 342 KMLVFGVDIDLATMVNVFVACANIGTLLLGK 372
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI GY++ NEAL F +++ D T+ +L A + A +E L+
Sbjct: 526 MIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNG 584
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ Y G + LAR D VS MI+GY G +EA+ F
Sbjct: 585 YSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFN 644
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ DEV+ + +L A S G LD G
Sbjct: 645 QMRMTGIEPDEVSFISILYACSHSGLLDEG 674
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY + G + A++ F +++S GV D + +L A + G K + +
Sbjct: 425 MITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENN 484
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S+ ++ T YA G ++ A +D +S MI GY++ NEAL F
Sbjct: 485 LETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFA 544
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ D T+ +L A + ALD G+ + ++T A+++MY K
Sbjct: 545 EMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVK 601
>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 694
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
+ISG+ Q G EAL+ F + D T L+A + A + ++ L S
Sbjct: 421 VISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSG 480
Query: 60 ----SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S++ ++ S YA GRI AR D VS A+I GY+ G EA+ F
Sbjct: 481 YIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E V DEVT V VL+A S G +D G
Sbjct: 541 EMEDNDVRPDEVTFVGVLSACSHAGLIDEG 570
Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S ++ + YAH G++R A R+ VS ++ISG+ Q G EAL+ F +
Sbjct: 386 SWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDA 445
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
D T L+A + AL G+ + F A+I YAK
Sbjct: 446 KRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAK 497
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 15/113 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+S ++ GR +A F ++ + V+ ++ A S G A++L +
Sbjct: 48 MLSALARHGRIADARRLFDEIP----RRNTVSWNAMIAACSDHGRVADARDLFDAMPARD 103
Query: 61 -YSLSSKTSRYAHSGRIRLARDPV---------SC-KAMISGYSQAGRFNEAL 102
+S + S YA +G + LARD + +C AMISGY++ GRF++A+
Sbjct: 104 GFSWTLMVSCYARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAV 156
Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 18/125 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---D 57
MISGY++ GRF++A+ ++ + D ++ VL + G + A + E+ D
Sbjct: 142 MISGYAKHGRFDDAVALLREMPA----PDIISWNSVLVGLTRNGEMVRAVKFFDEMPARD 197
Query: 58 LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
+ S++L + Y +G + A + VS +++GY +AGR EA E F ++
Sbjct: 198 MVSWNLMLEG--YVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRI 255
Query: 109 ESLGV 113
V
Sbjct: 256 PDRNV 260
>gi|255542916|ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548482|gb|EEF49973.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 422
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY + G + EALE F ++ + + + VL A + GA WI A +
Sbjct: 263 MIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNP 322
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
+ L + ++ YA GR+ +A D + AMI G + GR +A++ F
Sbjct: 323 MYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFL 382
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ V ++E+T V +L A + G +D G
Sbjct: 383 KMQKEKVRSNEITFVGLLNACAHKGMVDEG 412
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 55/173 (31%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY + G + A E F K+E V G+W
Sbjct: 201 MIDGYYKFGDVDSAKELFEKMEDRSV-----------------GSW-------------- 229
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+ S A +G ++ AR D +S +MI GY + G + EALE F ++
Sbjct: 230 ---NVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQEE 286
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + + VLAA + GALD G+ + L TA+++MYAK
Sbjct: 287 KIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDAVLGTALVDMYAK 339
>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 809
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI Y Q EA+ F K+ GV +V+++ L A + G +I +++E
Sbjct: 308 MIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELE 367
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++S S Y + A R VS AMI G++Q GR EAL F
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFS 427
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++++ V D T V V+ A + K N+F+TTA+++MYAK
Sbjct: 428 QMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAK 485
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI G++Q GR EAL F ++++ V D T V V+TA + WI ++
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ YA G I +AR + AMI GY G ALE F
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFE 528
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + + VT + V++A S G ++ G
Sbjct: 529 EMQKGTIRPNGVTFLSVISACSHSGLVEAG 558
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 78/185 (42%), Gaps = 40/185 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVV-----VLTASSGPGAWILAKELQ-- 53
M+ G+++ ++AL+ F ++ DEV VV +L + KE+
Sbjct: 106 MLKGFAKVSDLDKALKFFVRMRD-----DEVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160
Query: 54 -----IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
LDL ++++ + YA ++ AR D VS +++GYSQ G
Sbjct: 161 LVKSGFSLDL--FAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMAR 218
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
ALE + + +T+V VL A S + GK S + + TA++
Sbjct: 219 MALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALV 278
Query: 148 EMYAK 152
+MYAK
Sbjct: 279 DMYAK 283
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY+Q + +A++ F +++ G+ +E T+ L+ S ++L
Sbjct: 325 IISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAG 384
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I + + L K H+ I ++RD VS +ISGYSQ G+ +ALE F
Sbjct: 385 HFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFR 444
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ S G+ DE T + VL+A S G ++ GK S I+ IE YA M
Sbjct: 445 MMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACM 497
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD S +ISGY+Q + +A++ F +++ G+ +E T+ L+ S L+ G+
Sbjct: 317 RDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL 376
Query: 139 -----------NIFLTTAIIEMYAK 152
+IF+ +A++++Y K
Sbjct: 377 HAVAVKAGHFGDIFVGSALVDLYGK 401
>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
Length = 784
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GY+ G F EA++ + ++E G+ +D T V+ A G + K ++I
Sbjct: 95 IIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIG 154
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
DL Y + Y G I LA RD VS +M+SGY G +L F
Sbjct: 155 FDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFK 214
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ LG D M+ L A S L G +I + T++I+MY K
Sbjct: 215 EMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGK 272
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 42/194 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKL----------------ESLGVHTDEVTMVVVLTASSGPG 44
+I Y + G+ + A F ++ E V D +TM+ +L + S G
Sbjct: 266 LIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSG 325
Query: 45 AWILAKELQ---IELDLSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMIS 90
A + K + I Y + ++ Y G ++LA ++ VS M++
Sbjct: 326 ALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVA 385
Query: 91 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------S 138
Y Q ++ EAL+ F + + + D +T+ VL A + + GK S
Sbjct: 386 AYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGS 445
Query: 139 NIFLTTAIIEMYAK 152
N F++ AI+ MYAK
Sbjct: 446 NTFISNAIVYMYAK 459
>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 488
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MI Y+ G + A + F +E D V+ +++ G + A+EL ++ + +
Sbjct: 113 MILRYTSTGDVSGAQKLFNTMED----RDTVSWNTMISGYIKVGEVMKARELFEKMPEKN 168
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S S YA +G + AR + VS +MIS Y Q G F EAL+ F ++ S
Sbjct: 169 VVSWTSMISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLS 228
Query: 111 LGVHTDEVTMVVVLAASSGPGAL-----------DFGKSNIFLTTAIIEMYAK 152
G+ D T V V +A S G L DF + + TA+IEMYAK
Sbjct: 229 EGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLGVIAATALIEMYAK 281
>gi|125528323|gb|EAY76437.1| hypothetical protein OsI_04370 [Oryza sativa Indica Group]
Length = 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI G S+AG EA+ F ++ GV +E T +LT+ + GA I A ++
Sbjct: 144 MIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFL 203
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ +S S YA G + + ++ VS A+I GY+Q GR EAL+ F
Sbjct: 204 GKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGEEALDAFR 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++++ G+ D VT++ +L + G +D G S
Sbjct: 264 RMKATGLKPDRVTLLGLLFGCNHAGLVDEGYS 295
Score = 38.5 bits (88), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ +S AMI G S+AG EA+ F ++ GV +E T +L + + GAL G+S
Sbjct: 136 RNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSI 195
Query: 139 -----------NIFLTTAIIEMYAK 152
++F +++ YA+
Sbjct: 196 HASAIKFLGKLDVFAGNSLVSFYAR 220
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS A I +++GR +A+ F + G+ +E T +L ++S L G
Sbjct: 4 RDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVGAQL 63
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN+F+ +A+++ YAKM
Sbjct: 64 HACVAKLGLCSNVFVGSALVDHYAKM 89
>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+ISG+++ G EAL F K++ G E T +L +SS G+ W+ A ++
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSG 326
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLAR-DPVSCKAMISGYSQAGRFNEALEPFG 106
L Y ++ YA SG I RL + D VSC +M+ GY+Q G EA+E F
Sbjct: 327 KKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFE 386
Query: 107 KLE-SLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + + +++T + VL A S G LD G
Sbjct: 387 EMMLWVEIEPNDITFLSVLTACSHAGLLDEG 417
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 1 MISGYSQAGRFNEA---LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----- 52
MI+GYSQ G + A L F ++ G+ +E + ++ G+ + K++
Sbjct: 163 MITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCW 222
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+ + + SS YA G +R +R + VS A+ISG+++ G EAL
Sbjct: 223 KYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALG 282
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F K++ G E T +L +SS G+L+ GK
Sbjct: 283 LFVKMQREGFGATEFTYSALLCSSSTTGSLEQGK 316
>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
Length = 562
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ ++ EALE F ++ G+ VT+ VL A + GA + K++ LD S
Sbjct: 161 MITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASG 220
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ ++T+ YA G + + R+ VS AMI+ +Q G+ +EALE F
Sbjct: 221 FHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFK 280
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYA 151
++ G+ D T + VL A S G + K ++ +++E YA
Sbjct: 281 EMNLEGMVADATTFICVLRACSHAGLI---KESLEFFHSMVEDYA 322
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MI Y+ GR EAL F ++ + G V + +T V A +E+ L ++
Sbjct: 57 MIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHA-LAMA 115
Query: 60 SYSLSSKT--------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
S L S + Y G + AR D S +MI+ ++ EAL
Sbjct: 116 SGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEAL 175
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
E F ++ G+ VT+ VL A + GAL GK S++ TA+++MY
Sbjct: 176 ELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMY 235
Query: 151 AK 152
AK
Sbjct: 236 AK 237
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY + G F EALE F + G + +V + A + GA WI +
Sbjct: 214 MITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIHCYIKRNR 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+DL ++ YA G I +A RD +ISG + G+ A+E F
Sbjct: 274 MDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSATAVELFE 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ S GV +EVT V VL A S G +D G
Sbjct: 334 RMHSEGVVPNEVTFVSVLNACSRMGLVDKG 363
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AMI+GY + G F EALE F + G + +V + A + GALD G+
Sbjct: 206 RNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWI 265
Query: 139 -----------NIFLTTAIIEMYAK 152
+ + A+I+MYAK
Sbjct: 266 HCYIKRNRMDLDRVMGAALIDMYAK 290
>gi|224089599|ref|XP_002308772.1| predicted protein [Populus trichocarpa]
gi|222854748|gb|EEE92295.1| predicted protein [Populus trichocarpa]
Length = 320
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY+Q G EA F ++ V + VT+ +L A + G L K+L ++
Sbjct: 1 MIAGYTQHGLVEEAFVTFRQMLEKNVMPNAVTLATILPACNPVGNIDLGKQLHGVSIRLL 60
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + +S Y+ SG I A ++ V+ MI Y Q G AL F
Sbjct: 61 LDKNIFVSTSLVDMYSKSGSINYAESVFTKLPDKNSVTYTTMILAYGQHGMGERALSLFH 120
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D +T + VL+A S G +D G
Sbjct: 121 SMKKSGIEPDAITFIAVLSACSHSGLVDEG 150
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------- 138
MI+GY+Q G EA F ++ V + VT+ +L A + G +D GK
Sbjct: 1 MIAGYTQHGLVEEAFVTFRQMLEKNVMPNAVTLATILPACNPVGNIDLGKQLHGVSIRLL 60
Query: 139 ---NIFLTTAIIEMYAK 152
NIF++T++++MY+K
Sbjct: 61 LDKNIFVSTSLVDMYSK 77
>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 905
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q G +A + F ++++ G +++T + +LTA P K++ ++ +
Sbjct: 99 LISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG 158
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y + S Y G + AR D VS M+ Y+Q E L FG
Sbjct: 159 YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFG 218
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ D+VT + +L A + P LD GK S+I + TA++ M +
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVR 276
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY++ EA+ + +++S GV VT + +L+A + A+ K + ++ S
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461
Query: 61 -----YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y G + ARD +S +MI+G++Q G + A + F
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ + D +T VL+ P AL+ GK ++ L A+I MY +
Sbjct: 522 EMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ +Q G EA E + ++ S GV + T + +L A S A K + +
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S + S YA G + AR D +S A+I+GY++ EA+ +
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+++S GV VT + +L+A + A G KSN L A++ MY +
Sbjct: 421 QMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 68/146 (46%), Gaps = 15/146 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G++Q G + A + F ++++ + D +T VL+ P A L K++ + S
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ + Y G ++ AR D +S AMI G + G +A+E F
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622
Query: 107 KLESLGVH-TDEVTMVVVLAASSGPG 131
++++ G D T +L+A + G
Sbjct: 623 QMQNEGFRPPDGSTFTSILSACNHAG 648
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------I 54
MI GY+Q GR NEAL F ++ GV DEVT+V+VL+A + G K L
Sbjct: 490 MIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR 549
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ LS ++ Y G + A +D V AMI+GY+ G +ALE F
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G+ ++T + +L A S G ++ G+
Sbjct: 610 VQSREQGLWPTDITFIGLLNACSHSGMVEEGR 641
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D V AMI GY+Q GR NEAL F ++ GV DEVT+V+VL+A + G ++ GK
Sbjct: 482 KDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWL 541
Query: 139 ------------NIFLTTAIIEMYAK 152
++ + TA+I+MY K
Sbjct: 542 HSYVKNSRRVQLSVRVGTALIDMYCK 567
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQI---EL 56
+I GY+Q GR +E L F ++ G V ++ T+ +VL+A + GA+ K + L
Sbjct: 155 LIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENL 214
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ ++ K + Y G I +A RD +S MI+G + G EAL+
Sbjct: 215 GYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDL 274
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++++ G+ D+VT V VL A G ++ G
Sbjct: 275 FHEMKNCGISPDKVTFVGVLCACKHMGLVEDG 306
>gi|255562460|ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538489|gb|EEF40094.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 640
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+GY++ G E + F ++E GV D T+ VL A + G+ + K++ +
Sbjct: 373 LIAGYAREGLSGEGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENN 432
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S YA G + A +D VS MI GYS+ GR NE L F
Sbjct: 433 MQKDRIVCNSLMDMYAKCGSMEDANLVFLEMPNKDIVSWNTMIGGYSKNGRPNETLHLFV 492
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + D TM +L A + ALD G+ ++ + A+I+MYAK
Sbjct: 493 AMVQ-ELKPDGRTMACILPACASLAALDRGREIHGYIQRNGCFDDLHVANALIDMYAK 549
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
M+SGY++ G F E++ F K+ LG+ + T+ +L S G W+ L++
Sbjct: 171 MLSGYAKIGAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLG 230
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++S S Y + +I A RD VS +MISG + ++ F
Sbjct: 231 FGSYNTVVNSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMISGTVANDLPEKGIQVFK 290
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ LGV D VT+V VLAA + G G+
Sbjct: 291 EMLYLGVSFDLVTLVNVLAACANSGNFPLGR 321
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISG + ++ F ++ LGV D VT+V VL A + G + L + L + +
Sbjct: 272 MISGTVANDLPEKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQ 331
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD +++ Y+ G + A R VS ++I+GY++ G E + F
Sbjct: 332 LDQRMTFVNTLLDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIAGYAREGLSGEGIRLFH 391
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E GV D T+ VL A + G+L+ GK + + ++++MYAK
Sbjct: 392 EMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLMDMYAK 449
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
M++GYSQ G EA++ F ++ S G+ E T+V VL A S + K+ L++
Sbjct: 282 MVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQLHSFLLKLG 341
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ ++ ++ YA +G + AR C ++ISGY Q EAL +
Sbjct: 342 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYR 401
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ G+ ++ TM VL A S L+ GK
Sbjct: 402 RMKTAGIIPNDPTMASVLKACSSLATLELGK 432
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY Q EAL + ++++ G+ ++ TM VL A S L K++
Sbjct: 383 LISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 442
Query: 61 YSL-----SSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S+ ++ Y G R +D VS AMISG S G+ +EALE F
Sbjct: 443 FGLEVPIGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFE 502
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ + G D+VT V +++A S G ++ G S
Sbjct: 503 EMLAEGTEPDDVTFVNIISACSHKGFVERGWS 534
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ ++ AM++GYSQ G EA++ F ++ S G+ E T+V VL A S L GK
Sbjct: 274 RNSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVGVLNACSDICYLVEGKQL 333
Query: 139 -----------NIFLTTAIIEMYAK 152
++F TTA+++MYAK
Sbjct: 334 HSFLLKLGFERHLFATTALVDMYAK 358
>gi|255565583|ref|XP_002523781.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536869|gb|EEF38507.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 661
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 23/153 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA----------WILAK 50
M++GY+Q G A++ ++ GV +E T V+ A + P A W +
Sbjct: 469 MVAGYAQTGDTEGAVKILIQMAKKGVEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIKS 528
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
L +SS + + YA G I A RD VS +M+SGY+Q G +A
Sbjct: 529 RFNDALCVSS----ALVTMYAKRGEIESANEVFRRQGVRDLVSWNSMVSGYAQHGHARKA 584
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
LE F +++ + D VT + V++A + G +D
Sbjct: 585 LEVFKEMQDQNLELDGVTFIGVISACTHAGLVD 617
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
++ GY+ G EALE F ++++ + + T VL A + A I K +QI
Sbjct: 168 LLVGYAHNGLNMEALECFFEMQAGAIKPNPFTFATVLGALADSKA-IADKGVQIHTMVIK 226
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ + + +S + Y+ SG ++ A RD +S +M++GY G + EA+E
Sbjct: 227 NGFEATIFVCNSLINMYSKSGMVKNAKAVFDNMVTRDAISWNSMVAGYVANGLYLEAIEM 286
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F L GV V+ + + L F +
Sbjct: 287 FYHLRLAGVKLTNFIFSSVIKSCANIKELGFAR 319
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-ILAKELQIELDLS 59
+ISG+ Q G +A+ F ++ GV ++ T +L A + + A+ ++ + + S
Sbjct: 372 IISGHLQNGLAEQAVNLFCEMSREGVRPNDYTFSTILAAQPVVSPFEVHAQVIKSDYEKS 431
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
++ Y G + A +D V+ AM++GY+Q G A++ ++
Sbjct: 432 PSVGTALLDAYVKLGNLNEASKVFERIDDKDIVAWSAMVAGYAQTGDTEGAVKILIQMAK 491
Query: 111 LGVHTDEVTMVVVLAASSGP-GALDFGKS------------NIFLTTAIIEMYAK 152
GV +E T V+ A + P A++ GK + +++A++ MYAK
Sbjct: 492 KGVEPNEYTFSSVINACTAPTAAVEQGKQFHAWSIKSRFNDALCVSSALVTMYAK 546
>gi|359473776|ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
chloroplastic-like [Vitis vinifera]
Length = 835
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG+SQ+GR + ++ F L S GV + V A + + + I+
Sbjct: 361 LISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRG 420
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L SY S+ + Y+ GR+ AR D V+ A+ISGY+ G EAL F
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFR 480
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+++S GV + VT + VL A S G
Sbjct: 481 RMQSYGVRPNAVTFIAVLTACSHSG 505
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
++ GY+QA + ALE F ++ GV DE +VL G W + +++ ++L
Sbjct: 260 LMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLG 319
Query: 58 LSS------------YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
S S Y GRI D VS A+ISG+SQ+GR + ++ F
Sbjct: 320 AESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPND-VSWSALISGFSQSGRLEDCIKIF 378
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L S GV + V A + L+ G S ++ +A++ MY+K
Sbjct: 379 TSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSK 437
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+IS Y++ G +A+ F +++ G+ + + +L + GP L K++ + +
Sbjct: 159 VISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQ 218
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + ++ + Y G + A+ + V+ ++ GY+QA + ALE F
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFA 278
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV DE +VL G D G+ S + + T +++ Y K
Sbjct: 279 RMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVK 336
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 53/114 (46%), Gaps = 16/114 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G EAL F +++S GV + VT + VLTA S G AK+
Sbjct: 462 IISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQY-------- 513
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
L S + Y ++ D C MI YS+AG EALE ++ +H
Sbjct: 514 --LGSMSRDYG----VKPTIDHYDC--MIDTYSRAGLLQEALELINRIALYQLH 559
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L ++ VS +IS Y++ G +A+ F +++ G+ + + +L + GP L+ GK
Sbjct: 149 LMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGK 208
Query: 138 ------------SNIFLTTAIIEMYAK 152
+NI + TAI MY +
Sbjct: 209 QIHSHVIRAQLNANITVETAICNMYVR 235
>gi|255582516|ref|XP_002532043.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528286|gb|EEF30333.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 468
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GY+ + +AL + ++ G D T+V +L++ P G + + ++
Sbjct: 213 MIAGYAYLEKRIDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSHGIRFG 272
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + ++ S Y+ G + AR V+ +MISGY++ G +EAL+ F
Sbjct: 273 CDSEIHVANTLISMYSKFGDVYSARCLFDSMCNRSCVTWTSMISGYAEKGNMDEALKLFN 332
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E+ G D VT++ V++ G L+ G K N+ + A+I+MYAK
Sbjct: 333 AMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNCLKHNVVVCNALIDMYAK 390
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G +EAL+ F +E+ G D VT++ V++ G + K + + D +
Sbjct: 314 MISGYAEKGNMDEALKLFNAMEAAGEKPDLVTVLSVISGCGQTGILEVGKWIHVYADSNC 373
Query: 61 YS-----LSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
++ YA G I A D V+ MI+G + G F E+L+ F
Sbjct: 374 LKHNVVVCNALIDMYAKCGSIDDAWDLFNTMPDRTVVTWTTMIAGCALNGLFKESLDLFY 433
Query: 107 KLESLGV 113
++ G+
Sbjct: 434 QMIDFGL 440
Score = 35.8 bits (81), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 40/186 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G++Q G F ++ GV D VT++ V GA K+L++ + S
Sbjct: 110 MLLGFAQLGFSERVFCMFREMRFAGVFPDSVTLMGV------SGAISCMKDLELAKSVHS 163
Query: 61 YSL-----------SSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRF 98
+ + ++ S YA + +A R VS +MI+GY+ +
Sbjct: 164 FGIRIGIHNDVSVANTWISLYAKCYDLAMAESVFNGIEVGLRSVVSWNSMIAGYAYLEKR 223
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA-----------LDFG-KSNIFLTTAI 146
+AL + ++ G D T+V +L++ P A + FG S I + +
Sbjct: 224 IDALNSYKRMLHDGFMPDISTIVTLLSSCLQPEAVRQGMQVHSHGIRFGCDSEIHVANTL 283
Query: 147 IEMYAK 152
I MY+K
Sbjct: 284 ISMYSK 289
>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
Length = 667
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MISGY G L + ++ LG+ D T++ VL + G L K
Sbjct: 84 MISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSS 143
Query: 51 -ELQIELDLSSYSLSSKTSRYAHSGRIRL-----ARDPVSCKAMISGYSQAGRFNEALEP 104
E +I + + SK G +R+ R+ VS +MI+GY++ G + A+
Sbjct: 144 FERRINFSNTLLDMYSKCGDL--DGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 201
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E GV D V + +L A + G+LD GK SN+F+ A+++MYAK
Sbjct: 202 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 261
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 20/145 (13%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSR-----YAHSGRIRLAR--- 80
D TM +L A + A KE+ + + YS + Y G + LAR
Sbjct: 293 DSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLF 352
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
D VS MI+GY G NEA+ F ++ G+ DEV+ + +L A S G L+
Sbjct: 353 DMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLE 412
Query: 135 FG------KSNIFLTTAIIEMYAKM 153
G N F +E YA M
Sbjct: 413 QGWRFFYIMKNDFNIEPKLEHYACM 437
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AW----ILAKEL 52
MI+GY G NEA+ F ++ G+ DEV+ + +L A S G W I+ +
Sbjct: 366 MIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDF 425
Query: 53 QIELDLSSYS 62
IE L Y+
Sbjct: 426 NIEPKLEHYA 435
Score = 40.4 bits (93), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MISGY G L + ++ LG+ D T++ VL + G L GK+
Sbjct: 76 RDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAV 135
Query: 139 -----------NIFLTTAIIEMYAK 152
I + +++MY+K
Sbjct: 136 HSLAIKSSFERRINFSNTLLDMYSK 160
>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
Length = 1106
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q G +A + F ++++ G +++T + +LTA P K++ ++ +
Sbjct: 99 LISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAG 158
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y + S Y G + AR D VS M+ Y+Q E L FG
Sbjct: 159 YQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFG 218
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ D+VT + +L A + P LD GK S+I + TA++ M +
Sbjct: 219 QMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVR 276
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY++ EA+ + +++S GV VT + +L+A + A+ K + ++ S
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSG 461
Query: 61 -----YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y G + ARD +S +MI+G++Q G + A + F
Sbjct: 462 IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQ 521
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++ + D +T VL+ P AL+ GK ++ L A+I MY +
Sbjct: 522 EMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G++Q G + A + F ++++ + D +T VL+ P A L K++ + S
Sbjct: 503 MIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESG 562
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ + Y G ++ AR D +S AMI G + G +A+E F
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++++ G + T +L + LD GK I
Sbjct: 623 QMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVI 656
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ +Q G EA E + ++ S GV + T + +L A S A K + +
Sbjct: 301 LIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG 360
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S + S YA G + AR D +S A+I+GY++ EA+ +
Sbjct: 361 HSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYK 420
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+++S GV VT + +L+A + A G KSN L A++ MY +
Sbjct: 421 QMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + G +A+E F ++++ G + T +L + K++ + S
Sbjct: 604 MIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSG 663
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y L + S Y+ SG + AR D VS +I+GY+Q G A+E
Sbjct: 664 YELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAY 723
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V ++ + V +L A S AL+ GK ++ + A+I MYAK
Sbjct: 724 QMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAK 781
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
+I+GY+Q G A+E +++ V ++ + V +L A S A I+ ++
Sbjct: 705 IIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRK 764
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR------LARDPVSCKAMISGYSQAGRFNEALEPF 105
LQ ++ + + +L S ++ G + + ++ V+ AMI+ Y+Q G ++AL F
Sbjct: 765 LQGDVRVGA-ALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFF 823
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPG 131
+E G+ D T +L+A + G
Sbjct: 824 NCMEKEGIKPDGSTFTSILSACNHAG 849
>gi|125555089|gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
Length = 992
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
++S Q + A + F +++ L V TD VTM+ +++A S G LA+ LQ
Sbjct: 716 ILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKG 775
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + L++ ++ G I AR D VS MI+ YS G AL+ F
Sbjct: 776 FDGTIVVLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFL 835
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ S G+ D++T V VL+A S G L+ G++
Sbjct: 836 MMVSTGIKPDDITFVSVLSACSRSGFLEQGRT 867
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG--------------AW 46
MISGYS G EA E +++ G + ++V +++ SG G +
Sbjct: 214 MISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSG 273
Query: 47 ILAKELQIELDLSSYS----LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
+L E +S Y+ LSS S + S L + VSC +MIS Q G + +A
Sbjct: 274 VLGDESVTPAFISMYAAFGHLSSSLSLFHQS----LVDNLVSCNSMISVCMQHGAWEKAF 329
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
F + G+ + VT+V +L S ++ G+S + + +A++ MY
Sbjct: 330 GVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMY 389
Query: 151 AKM 153
+K+
Sbjct: 390 SKL 392
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
+ +S G E L + ++ + G +D T V+ A + L KE+ + + +
Sbjct: 116 VRCFSDHGFHRELLGLYREVCAFG--SDNFTFPPVIRACAAVSCLRLGKEVHCRVVRTGH 173
Query: 62 --SLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
++ +T+ YA SG++ L+R D +S AMISGYS G EA E +
Sbjct: 174 GGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQ 233
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF----LTTAIIEMYA 151
++ G + ++V +++ SG G D G KS + +T A I MYA
Sbjct: 234 MQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESVTPAFISMYA 289
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+ISGY ++N + +++ GV D +T++ V++ G I A ++
Sbjct: 416 LISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSR 475
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+L+ +++ + YA G++ + R +S +ISG+++ G L F
Sbjct: 476 LELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFC 535
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + D VT++ ++++ S + G+S ++ + A+I MY
Sbjct: 536 QMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTN 593
>gi|115440947|ref|NP_001044753.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|15623829|dbj|BAB67888.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|21104616|dbj|BAB93208.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534284|dbj|BAF06667.1| Os01g0839400 [Oryza sativa Japonica Group]
gi|125572581|gb|EAZ14096.1| hypothetical protein OsJ_04019 [Oryza sativa Japonica Group]
Length = 456
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI G S+AG EA+ F ++ GV +E T +LT+ + GA I A ++
Sbjct: 144 MIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSIHASAIKFL 203
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ +S S YA G + + ++ VS A+I GY+Q GR EAL+ F
Sbjct: 204 GKLDVFAGNSLVSFYARCGSLDDSVLAFKKIKNKNVVSWNALICGYAQNGRGEEALDAFR 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++++ G+ D VT++ +L + G +D G S
Sbjct: 264 RMKATGLKLDRVTLLGLLFGCNHAGLVDEGYS 295
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ +S AMI G S+AG EA+ F ++ GV +E T +L + + GAL G+S
Sbjct: 136 RNVISWNAMIGGSSKAGLNEEAVNLFLEMCREGVRPNESTFPCLLTSVANAGALGVGRSI 195
Query: 139 -----------NIFLTTAIIEMYAK 152
++F +++ YA+
Sbjct: 196 HASAIKFLGKLDVFAGNSLVSFYAR 220
Score = 37.7 bits (86), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS A I +++GR +A+ F + G+ +E T +L ++S L G
Sbjct: 4 RDVVSATAAIGALTRSGRHRDAVALFSGILGDGIVPNEFTFGTILQSASALRDLRVGAQL 63
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN+F+ +A+++ YAKM
Sbjct: 64 HACVAKLGLCSNVFVGSALVDHYAKM 89
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
MI+ Y++A + NEAL F +++ V D+VTMV VL+A GA + K + +
Sbjct: 239 MIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNR 298
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
IE+DL +S YA G I + RD + AMI G + G AL+
Sbjct: 299 IEIDLKLG--TSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDH 356
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K+ S + ++VT + VL+A S G +D G
Sbjct: 357 FSKMISEDIKPNDVTFIGVLSACSHIGLVDEG 388
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD +S +MI+ Y++A + NEAL F +++ V D+VTMV VL+A GAL GK
Sbjct: 231 RDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMI 290
Query: 139 -----------NIFLTTAIIEMYAK 152
++ L T++++MYAK
Sbjct: 291 HECIERNRIEIDLKLGTSLVDMYAK 315
>gi|302799100|ref|XP_002981309.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
gi|300150849|gb|EFJ17497.1| hypothetical protein SELMODRAFT_114322 [Selaginella moellendorffii]
Length = 682
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGY+Q + LE F +++ GV + VT V +L A S A +EL +
Sbjct: 335 LISGYAQNLQGRRCLELFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAG 394
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA------------RDPVSCKAMISGYSQAGRFNEALE 103
L+L + ++ + Y ++LA RD V+ A+ + Y+Q G EALE
Sbjct: 395 LELHTVVATALINMYGKCQELQLAQELLERYQSTGLRDSVTWNAIAAAYAQNGHPLEALE 454
Query: 104 PFGKLESLGVHTDEVTMVVVL-AASSGPGALDFGKSNIFLTT--------AIIEMYAK 152
F +++ GV E T V +L A L G+S L++ A++ MY+K
Sbjct: 455 LFWRMQQQGVRAQEATFVTILDACGDSSSLLAHGRSIAKLSSWTSDAIKGALLGMYSK 512
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MIS ++ G EA+E +++ G DEVT + V+ A S G L +Q EL +S
Sbjct: 233 MISLEARLGSSEEAVELLREIDLEGFPEPDEVTFISVVDACSCLGDLDLCFTIQ-EL-VS 290
Query: 60 SYSLSSK-------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
S + + SG + AR + VS +ISGY+Q + LE
Sbjct: 291 SAGFDDDLLLGNAVVNMFGKSGCLDAARATFDRLPVKNVVSWNCLISGYAQNLQGRRCLE 350
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F +++ GV + VT V +L A S ALDFG+ + + TA+I MY
Sbjct: 351 LFRQMDQEGVKANSVTFVSLLDACSTIPALDFGRELHLRITAAGLELHTVVATALINMYG 410
Query: 152 K 152
K
Sbjct: 411 K 411
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYS 62
+ Y+Q G EALE F +++ GV E T V +L A G + +LA I LSS++
Sbjct: 441 AAYAQNGHPLEALELFWRMQQQGVRAQEATFVTILDAC-GDSSSLLAHGRSIA-KLSSWT 498
Query: 63 LSSKTS----RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ Y+ G + A R ++ +M++ Y+ GR +EAL G+++
Sbjct: 499 SDAIKGALLGMYSKCGCVDDALAALQSLSSRGLLAWTSMLAAYAHVGRASEALRVLGQMQ 558
Query: 110 SLGVHTDEVTMVVVLAASSGPGAL 133
GV D+V V+ A S G L
Sbjct: 559 HDGVVPDDVAFSAVVFACSHAGLL 582
Score = 42.0 bits (97), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPG----AWILAKE 51
+++ ++ GR EAL ++ G D V V +L TA G AWILA
Sbjct: 29 ILAACARNGRNLEALLLVRRMIGEGARPDVVCFVTILDLCAATADLEQGKVAHAWILACG 88
Query: 52 LQ----------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEA 101
++ I + +L +++ RD V+ ++++ ++ G EA
Sbjct: 89 VESSSRVLGNALINMYGKCRNLDLARAQFDRMEHQDHGRDVVTWNSLLAAFTHNGYLEEA 148
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSG--------PGALDFG-KSNIFLTTAIIEMYAK 152
F ++E G+ VT+ VL + SG LD G + + FL ++++MYA+
Sbjct: 149 ARLFQEMEVEGIKPSSVTLTCVLESCSGDRQGKLFHDRVLDLGLQGDEFLMNSLVKMYAR 208
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+G++ G NEAL + ++ S GV D TMV +L+A GA L + + ++
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ ++ Y+ G R A R VS ++I G + G NEAL+ FG
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFG 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+LE G+ E+T V VL A S G LD G
Sbjct: 328 ELERQGLKPSEITFVGVLYACSHCGMLDEG 357
Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V+ ++I+G++ G NEAL + ++ S GV D TMV +L+A GAL G+
Sbjct: 200 RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERV 259
Query: 138 ----------SNIFLTTAIIEMYAK 152
N + A++++Y+K
Sbjct: 260 HMYMVKVGLVQNQHASNALLDLYSK 284
>gi|302807259|ref|XP_002985342.1| hypothetical protein SELMODRAFT_122264 [Selaginella moellendorffii]
gi|300146805|gb|EFJ13472.1| hypothetical protein SELMODRAFT_122264 [Selaginella moellendorffii]
Length = 404
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MIS Y+QAG N A+E F +++ G+ D VT +V+L A S G +I + +
Sbjct: 137 MISAYAQAGDSNAAIELFHRMDLEGIKPDGVTFMVLLEALGSIGSLQDGKFIHTRAASLG 196
Query: 56 LDLSSYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
D SL + + Y G ++ A + +S I+GY+Q G EALE +
Sbjct: 197 FDEQDTSLCNALLNLYTKCGSMQDAIALFHKMPTPNQISWTCTIAGYAQQGHSTEALELY 256
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ G ++VT++ VL A + G ++ G
Sbjct: 257 QKMDLEGTKPNQVTLLGVLTACTHAGLVEDG 287
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 42/165 (25%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+Q G EALE F E++ + ++ + A G LAK L+ LSS
Sbjct: 79 MISAYAQNGHSKEALELF--FEAI----ESSNSLINMYAKCGS----LAKALETFEKLSS 128
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ ++ MIS Y+QAG N A+E F +++ G+ D VT
Sbjct: 129 PGV-------------------IAWNTMISAYAQAGDSNAAIELFHRMDLEGIKPDGVTF 169
Query: 121 VVVLAASSGPGALDFGK-------------SNIFLTTAIIEMYAK 152
+V+L A G+L GK + L A++ +Y K
Sbjct: 170 MVLLEALGSIGSLQDGKFIHTRAASLGFDEQDTSLCNALLNLYTK 214
>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g01510-like [Glycine max]
Length = 815
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
+I GY+Q RF EA F + G+ D +T+ +L+ S A + +++
Sbjct: 110 LIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVG 169
Query: 56 LD---------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
D L SY + H + +D V+ A+++GYS+ G ++A+ F
Sbjct: 170 YDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFF 229
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
K++ LG E T VL A ++FG+ N+F+ A+++ Y+K
Sbjct: 230 KMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSK 287
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
+I+ + GR E+LE F +L+ + +L+ ++ + +++
Sbjct: 312 LITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTD 371
Query: 53 ---QIELDLSSYSLSSKTSRYAHSGRI--RLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + S + +K ++ + RI LA + V A+ISGY Q G + L+ F
Sbjct: 372 AISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFV 431
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D T +L A + +L GK SN+F +A+++MYAK
Sbjct: 432 EMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAK 489
>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g33170-like [Cucumis sativus]
Length = 1573
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISGY + G + AL + + GV DE T ++ ASS G I A ++++
Sbjct: 1171 MISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLD 1230
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y G ++ A R V AM+ G +Q G +EAL F
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFR 1290
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++S G+ D+VT + VL+A S G
Sbjct: 1291 TMQSNGIQPDKVTFIGVLSACSHSG 1315
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDL 58
GY ++ + +ALE F + +G+ DE+T+ + AS G I A +++ +
Sbjct: 1073 GYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN 1132
Query: 59 SSYSLSSKTSRYAHSGRI--------RLAR-DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ S Y G + ++R D V+ MISGY + G + AL + +
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMR 1192
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK---SNI---------FLTTAIIEMYAK 152
GV DE T ++ ASS AL+ GK +N+ F+ T++++MY K
Sbjct: 1193 VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCK 1247
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--------GAWILAKEL 52
MIS Y+Q EA+ F L G+ D+ T+ VL A S G+ + +
Sbjct: 966 MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAI 1025
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+ + S+ ++ Y+ G++ A D S A++ GY ++ + +ALE
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
F + +G+ DE+T+ + AS L GK +++++++ +++MY
Sbjct: 1086 HFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI 1145
Query: 152 K 152
K
Sbjct: 1146 K 1146
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
++ + AG+ A++ F L + D VT+V++L+A+ G L +++ + SS+
Sbjct: 866 LTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925
Query: 62 S-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ +S + Y+ +G + A D +S MIS Y+Q EA+ F
Sbjct: 926 APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD 985
Query: 108 LESLGVHTDEVTMVVVLAASSGPG--------------ALDFGKSNI-FLTTAIIEMYAK 152
L G+ D+ T+ VL A S A+ G N F++TA+I++Y+K
Sbjct: 986 LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045
>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
[Cucumis sativus]
Length = 1573
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISGY + G + AL + + GV DE T ++ ASS G I A ++++
Sbjct: 1171 MISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLD 1230
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y G ++ A R V AM+ G +Q G +EAL F
Sbjct: 1231 YSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFR 1290
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++S G+ D+VT + VL+A S G
Sbjct: 1291 TMQSNGIQPDKVTFIGVLSACSHSG 1315
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 26/175 (14%)
Query: 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDL 58
GY ++ + +ALE F + +G+ DE+T+ + AS G I A +++ +
Sbjct: 1073 GYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN 1132
Query: 59 SSYSLSSKTSRYAHSGRI--------RLAR-DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ S Y G + ++R D V+ MISGY + G + AL + +
Sbjct: 1133 DLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMR 1192
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK---SNI---------FLTTAIIEMYAK 152
GV DE T ++ ASS AL+ GK +N+ F+ T++++MY K
Sbjct: 1193 VSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCK 1247
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 80/181 (44%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--------GAWILAKEL 52
MIS Y+Q EA+ F L G+ D+ T+ VL A S G+ + +
Sbjct: 966 MISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAI 1025
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+ + S+ ++ Y+ G++ A D S A++ GY ++ + +ALE
Sbjct: 1026 KCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALE 1085
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
F + +G+ DE+T+ + AS L GK +++++++ +++MY
Sbjct: 1086 HFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYI 1145
Query: 152 K 152
K
Sbjct: 1146 K 1146
Score = 42.7 bits (99), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 29/180 (16%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
++ + AG+ A++ F L + D VT+V++L+A+ G L +++ + SS+
Sbjct: 866 LTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSF 925
Query: 62 S-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ +S + Y+ +G + A D +S MIS Y+Q EA+ F
Sbjct: 926 APVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRD 985
Query: 108 LESLGVHTDEVTMVVVLAASSGPG--------------ALDFGKSNI-FLTTAIIEMYAK 152
L G+ D+ T+ VL A S A+ G N F++TA+I++Y+K
Sbjct: 986 LLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALIDLYSK 1045
>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59200, chloroplastic-like [Glycine max]
Length = 629
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
+I G + G FN LE F +++ GV +EVT V VL+A + GA WI A +
Sbjct: 228 VIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWIHAYMRKCG 287
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++++ + + + Y+ G I A +D + +MI G + G+ EA+E F
Sbjct: 288 VEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVSTYNSMIGGLALHGKSIEAVELFS 347
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V + +T V VL A S G +D G
Sbjct: 348 EMLKERVRPNGITFVGVLNACSHGGLVDLG 377
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V +I G + G FN LE F +++ GV +EVT V VL+A + GAL+ G+
Sbjct: 220 RDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVEPNEVTFVCVLSACAQLGALELGRWI 279
Query: 138 ----------SNIFLTTAIIEMYAK 152
N F+ A+I MY++
Sbjct: 280 HAYMRKCGVEVNRFVAGALINMYSR 304
>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 676
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 33/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
M++G+ AG+ +A+E + ++ G+ DEV +V V+ A + G ++L
Sbjct: 175 MVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHA 234
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+Q+++ +S+ S YA +G AR + VS A+IS +Q G +EAL
Sbjct: 235 MQMDVVIST----SLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEAL 290
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYA 151
F ++ G+H + +V L A S G L GKS + + TA+I+MY+
Sbjct: 291 GLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVGTAVIDMYS 350
Query: 152 K 152
K
Sbjct: 351 K 351
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
R+R RD V+ M++G+ AG+ +A+E + ++ G+ DEV +V V+ A + G
Sbjct: 163 RMR-KRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDAR 221
Query: 135 FGKS------------NIFLTTAIIEMYAK 152
G S ++ ++T++++MYAK
Sbjct: 222 MGASVHGYLLRHAMQMDVVISTSLVDMYAK 251
>gi|226531396|ref|NP_001147435.1| methyltransferase small domain [Zea mays]
gi|195611352|gb|ACG27506.1| methyltransferase small domain [Zea mays]
Length = 601
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 80/154 (51%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
+++GY++ FNE ++ F + + V+ D+VT V +++A++G G+ W++ KE
Sbjct: 327 LLAGYARYKGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGKGSLNHAKSVHGWVV-KE 385
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ S+ Y G +++A +D AMISG + G EAL
Sbjct: 386 FGHQ---DAFLASALVDMYCKCGNVKIAYYVFEKALDKDVTLWTAMISGLAFNGHGTEAL 442
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
E F K+++ V + VT++ VL+A S G LD G
Sbjct: 443 ELFWKMQTEVVAPNGVTLLAVLSACSHSGLLDEG 476
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 92/214 (42%), Gaps = 65/214 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------------------- 40
M+SGY G +AL F + S G+ D+ T V +LT
Sbjct: 193 MLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNELIGRSVHGVIVRRM 252
Query: 41 -SGPGAWILAKELQIELDL--------------------SSYSLSSKTSRYAHSGRIRLA 79
+G IL L LD+ + S ++ S + ++G + LA
Sbjct: 253 DAGDHGLILVNAL---LDMYAKCGRMNAAKTIFGEAGEKDAISWNTMVSGFVNAGMLDLA 309
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
RD +S A+++GY++ FNE ++ F + + V+ D+VT V +++A++G
Sbjct: 310 SRFFSEAPSRDLISWNALLAGYARYKGFNEVMKLFHDMLASCVNLDKVTAVTLISAAAGK 369
Query: 131 GALD------------FGKSNIFLTTAIIEMYAK 152
G+L+ FG + FL +A+++MY K
Sbjct: 370 GSLNHAKSVHGWVVKEFGHQDAFLASALVDMYCK 403
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS------- 127
R L D VSC M+SGY G +AL F + S G+ D+ T V +L
Sbjct: 180 RSALVLDTVSCNIMLSGYVNEGCTLKALWFFRDMASRGIVVDQYTAVALLTCCGRLKNEL 239
Query: 128 ---SGPGA----LDFGKSNIFLTTAIIEMYAK 152
S G +D G + L A+++MYAK
Sbjct: 240 IGRSVHGVIVRRMDAGDHGLILVNALLDMYAK 271
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+G++ G NEAL + ++ S GV D TMV +L+A GA L + + ++
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVG 267
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + ++ ++ Y+ G R A R VS ++I G + G NEAL+ FG
Sbjct: 268 LVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFG 327
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+LE G+ E+T V VL A S G LD G
Sbjct: 328 ELERQGLKPSEITFVGVLYACSHCGMLDEG 357
Score = 40.4 bits (93), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V+ ++I+G++ G NEAL + ++ S GV D TMV +L+A GAL G+
Sbjct: 200 RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERV 259
Query: 138 ----------SNIFLTTAIIEMYAK 152
N + A++++Y+K
Sbjct: 260 HMYMVKVGLVQNQHASNALLDLYSK 284
>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 694
Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
++S Y+Q G EALE F ++ + V D V +V VL A + G I A +++
Sbjct: 193 IVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMG 252
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ L S + YA G++ A+ + + AMISGY++ G +A++ F
Sbjct: 253 LETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFH 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + V D +++ ++A + G+L+ + ++F+++A+I+M+AK
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAK 370
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS+ F +AL + K++ V D T +L A G G ++ A+ ++
Sbjct: 90 IIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLG 149
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEP 104
+ + + + YA R+ AR VS A++S Y+Q G EALE
Sbjct: 150 FEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEI 209
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ + V D V +V VL A + L+ G+S
Sbjct: 210 FSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRS 243
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G +A++ F ++ + V D +++ ++A + G+ A+ + + S
Sbjct: 294 MISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSD 353
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ +A G + AR D V AMI GY G+ EA+ +
Sbjct: 354 YRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYR 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+E GVH ++VT + +L A + G + G
Sbjct: 414 AMERDGVHPNDVTFLGLLIACNHSGMVREG 443
>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+++GYS G + EA++ F K+ GV+ D++ + VL+A + G I A ++
Sbjct: 113 LVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S +S + YA G I A RD +S A+I GY+Q GR +L+ +
Sbjct: 173 LESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYD 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ + G D +T + +L A S G L G++
Sbjct: 233 QMIATGTKPDYITFIGLLFACSHNGLLGSGRA 264
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
+I G + G +AL F K+ S + DE T+ VL + + I L I+
Sbjct: 12 LILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLIIKTG 71
Query: 58 LSSYSLSSKT--SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+Y L + YA G++ A +D VS ++++GYS G + EA++ F
Sbjct: 72 FEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFC 131
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ GV+ D++ + VL+A + +DFG+ S++ + +++ MYAK
Sbjct: 132 KMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAK 189
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ Y Q +++ E F +++ G+ ++ T +L + GA L +++ +
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTG 493
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ Y S YA G++ LA D VS AMI+GY Q F+EAL+ F
Sbjct: 494 FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFE 553
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E G+ D + ++A +G AL G+ +++ + A+I +YA+
Sbjct: 554 EMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYAR 611
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY Q F+EAL+ F ++E G+ D + ++A +G A +++ +
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAG 594
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
DLS + + S YA GRI+ A ++ +S +++SG +Q+G F EAL+
Sbjct: 595 FGADLSINN--ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQV 652
Query: 105 FGKL 108
F ++
Sbjct: 653 FVRM 656
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVT-----MVVVLTASSGPGAWILAKELQIE 55
++SG +Q+G F EAL+ F ++ + T A+ G I + L+
Sbjct: 636 LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D +S S YA SG I A R+ +S AMI+GYSQ G EAL F
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ + VT V VL+A S G + G
Sbjct: 756 EMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG SQ G EA+ F + + + + VL+AS+ + L ++L I+
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291
Query: 58 LSS--YSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
S Y + + Y+ S ++ R+ +RD VS ++ISG Q G + ALE F
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K++ + D +T+ +L+A + GAL G ++I L +++++Y+K
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSK 409
>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
Length = 1151
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q +AL F +++ G+ D + + ++ +G A ++ + +S
Sbjct: 417 MIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSG 476
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS ++ + YA GRIR A +D ++ ++SG++Q+G EAL+ F
Sbjct: 477 YSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFM 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ GV + T V L+AS+ + GK
Sbjct: 537 RMDQSGVKHNVFTFVSALSASANLAEIKQGKQ 568
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG++Q+G EAL+ F +++ GV + T V L+AS+ K++ + +
Sbjct: 518 LVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG 577
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ S Y G A R+ VS +I+ SQ GR EAL+ F
Sbjct: 578 HSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+ ++VT + VLAA S G ++ G S
Sbjct: 638 QMKKEGIKPNDVTFIGVLAACSHVGLVEEGLS 669
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G EAL + ++ GV + VL SS A + A+ I
Sbjct: 114 MLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQGRLIHAQGYK 171
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ S+ + Y G RLA RD V+ +ISG++Q G ALE
Sbjct: 172 HGFCSEIFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEI 231
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT+ +LAA + G L G
Sbjct: 232 FEEMQFSGLSPDCVTISSLLAACASLGDLQKG 263
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ Y Q +++ E F +++ G+ ++ T +L + GA L +++ +
Sbjct: 434 MLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTG 493
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ Y S YA G++ LA D VS AMI+GY Q F+EAL+ F
Sbjct: 494 FQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFE 553
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++E G+ D + ++A +G AL G+ +++ + A+I +YA+
Sbjct: 554 EMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYAR 611
Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 18/124 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+GY Q F+EAL+ F ++E G+ D + ++A +G A +++ +
Sbjct: 535 MIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAG 594
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
DLS + + S YA GRI+ A ++ +S +++SG +Q+G F EAL+
Sbjct: 595 FGADLSINN--ALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQV 652
Query: 105 FGKL 108
F ++
Sbjct: 653 FVRM 656
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVT-----MVVVLTASSGPGAWILAKELQIE 55
++SG +Q+G F EAL+ F ++ + T A+ G I + L+
Sbjct: 636 LVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTG 695
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D +S S YA SG I A R+ +S AMI+GYSQ G EAL F
Sbjct: 696 YDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFE 755
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ + VT V VL+A S G + G
Sbjct: 756 EMKVCGIMPNHVTFVGVLSACSHIGLVKEG 785
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG SQ G EA+ F + + + + VL+AS+ + L ++L I+
Sbjct: 232 MISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWG 291
Query: 58 LSS--YSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
S Y + + Y+ S ++ R+ +RD VS ++ISG Q G + ALE F
Sbjct: 292 FHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFT 351
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K++ + D +T+ +L+A + GAL G ++I L +++++Y+K
Sbjct: 352 KMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSK 409
>gi|242073008|ref|XP_002446440.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
gi|241937623|gb|EES10768.1| hypothetical protein SORBIDRAFT_06g016100 [Sorghum bicolor]
Length = 349
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 25/173 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q G EAL F + + G+H DE+ +V +++A S G LA+ IE ++
Sbjct: 74 MISGYAQNGYPGEALRTFDEFQGQGIHPDELLVVGLMSACSQLGNIRLAR--WIEDYVTK 131
Query: 61 YSLSSKTSRY--------AHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
YS+ K + A G + A RD S +++ G+ G N+A+E
Sbjct: 132 YSIDMKNAHVLAGLVNMNAKCGNLERATVLFESMPVRDVFSYCSLMQGHCLHGSANKAVE 191
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMY 150
F ++ G+ D VVL A S G ++ K N++L E Y
Sbjct: 192 LFSQMLLEGLSPDNAAFTVVLTACSHAGLVEEAKKFFDMMKNVYLIVPSGEHY 244
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 49 AKELQIEL-DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
AK L E+ + ++ + +S YA +G + +AR D S MISGY+Q G
Sbjct: 25 AKRLFDEMPERTATACTSLIGGYAKTGNMEIARLLFDKLEDRDLFSWSVMISGYAQNGYP 84
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
EAL F + + G+H DE+ +V +++A S G + +
Sbjct: 85 GEALRTFDEFQGQGIHPDELLVVGLMSACSQLGNIRLAR 123
>gi|357444867|ref|XP_003592711.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481759|gb|AES62962.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 24/150 (16%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKEL 52
I GY +AG + EA+ F K+ ++G +EVTMV VL+A + GA +I+ L
Sbjct: 218 IDGYVKAGEYREAMAVFEKMRAVGPKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLL 277
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEA 101
+ + L +S YA G I A D AMI G + G E+
Sbjct: 278 PMTMVLQ----TSLVDMYAKCGAIEEALFVFRGISKSQTDVFIWNAMIGGLATHGLVEES 333
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
L+ F +++ G+ +DE+T + +LAA + G
Sbjct: 334 LKLFKEMQMAGIRSDEITYLCLLAACAHGG 363
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S YA G + +A RD S + I GY +AG + EA+ F K+ ++G
Sbjct: 182 SWNSMLDGYAKCGEMAMAQKVFESMQERDVRSWSSFIDGYVKAGEYREAMAVFEKMRAVG 241
Query: 113 VHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+EVTMV VL+A + GAL G+ + L T++++MYAK
Sbjct: 242 PKANEVTMVSVLSACAHLGALQKGRMMHQYIIDNLLPMTMVLQTSLVDMYAK 293
>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
Length = 449
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ ++ EALE F ++ G+ VT+ VL A + GA + K++ LD S
Sbjct: 48 MITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASG 107
Query: 61 Y--SLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ ++T+ YA G + + R+ VS AMI+ +Q G+ +EALE F
Sbjct: 108 FHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFK 167
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYA 151
++ G+ D T + VL A S G + K ++ +++E YA
Sbjct: 168 EMNLEGMVADATTFICVLRACSHAGLI---KESLEFFHSMVEDYA 209
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D S MI+ ++ EALE F ++ G+ VT+ VL A + GAL GK
Sbjct: 41 DAFSWTNMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIH 100
Query: 138 ---------SNIFLTTAIIEMYAK 152
S++ TA+++MYAK
Sbjct: 101 SRLDASGFHSSVLAQTALLDMYAK 124
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+S Y+QA ++A F ++ + GV +VT+V +L+ + GA L K + +D
Sbjct: 330 MLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER 389
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I ++RD A+I+G++ G EAL+ F
Sbjct: 390 VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFA 449
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E GV +++T + +L A S G + GK
Sbjct: 450 EMERQGVKPNDITFIGLLHACSHAGLVTEGK 480
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD + AM+S Y+QA ++A F ++ + GV +VT+V +L+ + GALD GK
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ L TA+++MYAK
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAK 406
Score = 38.5 bits (88), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-LAKE-----LQI 54
+I+ Y++ + AL + +L + D VL A G +W L KE L+
Sbjct: 95 VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKAC-GQVSWTQLGKEIHGFVLKK 153
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
LD + ++ Y + AR D VS MI S+ F+ ALE
Sbjct: 154 GLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELI 213
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------------NIFLTTAIIEMYA 151
++ + V EV MV ++ + + GK+ + TTA+++MYA
Sbjct: 214 REMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYA 273
Query: 152 K 152
K
Sbjct: 274 K 274
>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49710-like [Cucumis sativus]
Length = 720
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRF-NEALEPFGKLESLGVHTDEVTMVVVLTASSG---PGAWILAKELQIEL 56
MISGYS +EALE F +L+ +G D+ ++V V++A S P L ++L
Sbjct: 313 MISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKL 372
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
D+ S +S + Y+ G +R A+ + VS +MI+GY+Q G ++L
Sbjct: 373 DIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHL 432
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ + +T + VLAA + G ++ GK
Sbjct: 433 FQRMLEMDFTPTNITFISVLAACAHTGRVEDGK 465
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y Q ++ALE + ++ G+ D T+ VLTA + + + +L S
Sbjct: 211 MVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG 270
Query: 61 YSLSSKT-----SRYAHSGRIRL----------ARDPVSCKAMISGYSQAGRF-NEALEP 104
Y +S Y+ G L D V MISGYS +EALE
Sbjct: 271 YHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALEC 330
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGA-------------LDFGKSNIFLTTAIIEMYA 151
F +L+ +G D+ ++V V++A S + LD + I + A+I MY+
Sbjct: 331 FRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYS 390
Query: 152 K 152
K
Sbjct: 391 K 391
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY++ G ALE F +++ + + DE+++V VL A + GA L K + I D +
Sbjct: 194 IVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYADKAG 253
Query: 61 Y-----SLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + RL RD +S MI G + GR EA+E F
Sbjct: 254 FLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVGLANHGRAREAIELFQ 313
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ V + +T V +L+A + G L+ G
Sbjct: 314 EMQKAKVEPNIITFVGLLSACAHAGLLNEG 343
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 12/81 (14%)
Query: 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------ 137
S A++SGY++ G ALE F +++ + + DE+++V VL A + GAL+ GK
Sbjct: 190 SWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGALELGKWIHIYA 249
Query: 138 ------SNIFLTTAIIEMYAK 152
+I + A+IE+YAK
Sbjct: 250 DKAGFLRDICVCNALIEVYAK 270
>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 660
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 33/165 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+S Y+Q GRFN+ALE ++E+L + ++ TM +L A +
Sbjct: 192 MVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVT------------------- 232
Query: 61 YSLSSKTSRYAHSGRIRLARDPV-SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119
+ +S Y ++L + V S MI+ Y EA+ + ++E+ GV D V+
Sbjct: 233 -NTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVS 291
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+V VL A AL G+ N+ L A+I+MYAK
Sbjct: 292 IVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAK 336
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI Y + +AL + + + G D T VL ASS G I L+I
Sbjct: 91 MIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIG 150
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL+ Y + + Y ++ A RD VS +M+S Y+Q GRFN+ALE
Sbjct: 151 LDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCR 210
Query: 107 KLESLGVHTDEVTMVVVLAASSG 129
++E+L + ++ TM +L A +
Sbjct: 211 EMEALNLKPNDCTMASLLPAVTN 233
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI+ Y EA+ + ++E+ GV D V++V VL A A L + + +
Sbjct: 260 MIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKK 319
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L + L + YA G +R AR D VS ++IS Y + G+ +A+ F
Sbjct: 320 LLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFA 379
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + G++ D + V VLAA S G LD G+
Sbjct: 380 EMRNSGLNPDSIAFVSVLAACSHAGLLDDGR 410
>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
Length = 787
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGYS G ++ F +L +LG+ + T+V ++ S G +LA+ L + S
Sbjct: 284 LISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSG 343
Query: 61 YSLSSKTSRYAHSGRIRL-----ARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
++ +S S + RL AR S AMISGY+Q G A+ F
Sbjct: 344 FTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFE 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ L V + +T+ L+A + GAL GK N+++ TA+I+MYAK
Sbjct: 404 QMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAK 461
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY+Q G A+ F ++ L V + +T+ L+A + GA L K L + +
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEED 444
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + Y +++ YA G I AR + VS AMI+GY G+ EAL+ +
Sbjct: 445 LEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + T + VL A S G ++ G
Sbjct: 505 DMLDAHLLPTSATFLSVLYACSHGGLVEEG 534
>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
Length = 742
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI+GY +GR +AL+ F ++ G+ D T+V +LTA + GA + L
Sbjct: 341 MITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI 400
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+E D+ Y ++ Y GR+ A RD + AMI+G + G +ALE
Sbjct: 401 VEEDV--YLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALES 458
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +++ G VT + VL A S LD G+
Sbjct: 459 FCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGR 491
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 60/211 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------------GPGA 45
+I+GYS+AGR +A+ F + S GV DEV ++ L+A S G
Sbjct: 208 LIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKR 267
Query: 46 WILAKELQIELDLSSYSLSSKTSR-----------------------YAHSGRIRLAR-- 80
+ L + L + Y+ ++ Y G + +AR
Sbjct: 268 IRMTDNLVVAL-IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSL 326
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
D ++ +MI+GY +GR +AL+ F ++ G+ D T+V +L A + GAL
Sbjct: 327 FDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGAL 386
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
G++ +++L TA+++MY K
Sbjct: 387 PHGRALHASIEQRIVEEDVYLGTALLDMYMK 417
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG--------PG 131
R+ VS ++I+GYS+AGR +A+ F + S GV DEV ++ L+A S
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLL 259
Query: 132 ALDFGKSNIFLT----TAIIEMYAK 152
L G+ I +T A+I+MYAK
Sbjct: 260 HLLVGQKRIRMTDNLVVALIDMYAK 284
>gi|255586231|ref|XP_002533770.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526307|gb|EEF28615.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 617
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 51/173 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q + +A+E +++S G DEVT + +LTA
Sbjct: 322 MIAGYGQKCKSGKAIEYLQRMQSCGFEPDEVTYINMLTAC-------------------- 361
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKA---------MISGYSQAGRFNEALEPFGKLESL 111
SG I + R C A M+SGY Q NEA++ F +++
Sbjct: 362 ----------VRSGDIEIGRQIFDCMACPGVSSWNGMLSGYFQIENHNEAIKLFREMQFQ 411
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V D T+ ++L++ +G L+ GK +I++ + +I MY+K
Sbjct: 412 NVKPDRTTLAIILSSCAGMELLEAGKQVHAISQKAAFHEDIYVASGLIGMYSK 464
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+SGY Q NEA++ F +++ V D T+ ++L++ +G G + A +
Sbjct: 388 MLSGYFQIENHNEAIKLFREMQFQNVKPDRTTLAIILSSCAGMELLEAGKQVHAISQKAA 447
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S Y+ G++ +A +D V +MI+G S NEAL F
Sbjct: 448 FHEDIYVASGLIGMYSKCGKMDIADCIFKKISKQDTVCWNSMIAGLSLNSLDNEALAFFQ 507
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ + + +L+ + +L GK +++++ +A+++MY K
Sbjct: 508 QMRQSGMSPTQFSYATILSCCAKLSSLIHGKQIHAQIAKEGFVNDVYVGSALVDMYCK 565
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 25/162 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-------------- 46
M+SG++Q R EALE F + G+ D V++ VL + G
Sbjct: 210 MMSGFTQTDRVVEALEMFRLMCRQGICIDSVSLSSVLGVCTKGGCGESDQSDGSLRNALG 269
Query: 47 ILAKELQIELDLSS--YSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQA 95
LA L I+L S + +S YA G + A + VS MI+GY Q
Sbjct: 270 KLAHGLAIKLGFESDLHLCNSLLDMYAKDGDMDSAEEVFANLPEMSVVSWNVMIAGYGQK 329
Query: 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +A+E +++S G DEVT + +L A G ++ G+
Sbjct: 330 CKSGKAIEYLQRMQSCGFEPDEVTYINMLTACVRSGDIEIGR 371
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 82/184 (44%), Gaps = 42/184 (22%)
Query: 9 GRF-NEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQIELDLSS 60
GR +AL+ + ++ G+ T+ +L+A SG L ++I LD +
Sbjct: 116 GRLEQQALDVYNEMIWEGLMPTHFTLASILSACGTLLNMESGRKCHTLI--VKIGLDNNV 173
Query: 61 YSLSSKTSRYAHSGRIRLA-------RDP--VSCKAMISGYSQAGRFNEALEPFGKLESL 111
Y ++ S Y+ G +R A ++P V+ AM+SG++Q R EALE F +
Sbjct: 174 YVSNALLSVYSKCGLVRDAVRLFEEMQEPNEVTYTAMMSGFTQTDRVVEALEMFRLMCRQ 233
Query: 112 GVHTDEVTMVVVLAASSGPG----------------------ALDFG-KSNIFLTTAIIE 148
G+ D V++ VL + G A+ G +S++ L ++++
Sbjct: 234 GICIDSVSLSSVLGVCTKGGCGESDQSDGSLRNALGKLAHGLAIKLGFESDLHLCNSLLD 293
Query: 149 MYAK 152
MYAK
Sbjct: 294 MYAK 297
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS M+SGY+QA R EALE F ++ +GV DEV MV V++A + G L+ G
Sbjct: 381 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEV 440
Query: 137 ----KSNIF-----LTTAIIEMYAK 152
N F L A+I+MYAK
Sbjct: 441 HRYIDENGFGWMVSLCNALIDMYAK 465
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+QA R EALE F ++ +GV DEV MV V++A + G E+ +D +
Sbjct: 389 MVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENG 448
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + LA + ++ +MIS + G +A F
Sbjct: 449 FGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFT 508
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ D VT + +L A + G +D G
Sbjct: 509 LMLYSGIRPDGVTFLALLTAYTHKGWVDDG 538
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+QA R EALE F ++ +GV DEV MV V++A + G E+ +D +
Sbjct: 202 MVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEVHRYIDENG 261
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G + LA + ++ +MIS + G +A F
Sbjct: 262 FGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFT 321
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ D VT + +L A + G +D G
Sbjct: 322 LMLYSGIRPDGVTFLALLTAYTHKGWVDDG 351
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS M+SGY+QA R EALE F ++ +GV DEV MV V++A + G L+ G
Sbjct: 194 RDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVSVISACTSLGDLETGFEV 253
Query: 137 ----KSNIF-----LTTAIIEMYAK 152
N F L A+I+MYAK
Sbjct: 254 HRYIDENGFGWMVSLCNALIDMYAK 278
>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
Length = 657
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGYS G ++E F +L + + T+V V+ S G +LA+ L +
Sbjct: 284 LISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKAR 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
LD + ++ T+ Y + AR S AMISGY+Q G A+E F
Sbjct: 344 LDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQ 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ L V + T+ L+A + GAL G + N+++ TA+I+MYAK
Sbjct: 404 LMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKENLELNVYVMTALIDMYAK 461
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 74/154 (48%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----W---ILAKEL 52
MISGY+Q G A+E F ++ L V + T+ L+A + GA W I+AKE
Sbjct: 385 MISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACAQLGALSLGTWVHRIIAKE- 443
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
L+L+ Y +++ YA G I AR + VS AMISGY GR EAL+
Sbjct: 444 --NLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALK 501
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ + + T + VL A S G +D G+
Sbjct: 502 LYKSMLDACILPTSSTFLSVLYACSHGGLVDEGQ 535
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY +AG F+EA+ F +++ V + T V VL A G + K + S+
Sbjct: 106 VISGYVRAGLFDEAVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSA 162
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S Y G + A+ D VS ++ISG Q EALE F
Sbjct: 163 FGVGLEVSNALMDMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQ 222
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++S G+ D + + VL+A + GALD+G K +I + TA+++MYAK
Sbjct: 223 DMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAK 280
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWI------LA 49
++SGY+ R A + ++ G D T VL + + G G + +
Sbjct: 5 LVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMG 64
Query: 50 KELQIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I ++ S S R+ + R+ L RD VS +ISGY +AG F+EA+ F
Sbjct: 65 FVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFL 124
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ V + T V VL A G L GK + ++ A+++MY K
Sbjct: 125 RMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVK 179
>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
Length = 603
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGA-----WILA--KEL 52
MI+GY+Q G+ A+E F ++ + T DEVTMV V++A GA W++ E
Sbjct: 206 MIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTEN 265
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPF 105
QI+L +S ++ + S+ + R+ RD VS +ISG++ G EA+
Sbjct: 266 QIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLM 325
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF--LTTAIIEMYAKM 153
++ G+ D VT + VL A S G L+ G+ +F + I+ YA M
Sbjct: 326 STMKEGGIEPDRVTFIGVLTACSHAGLLEEGRK-VFESIKDPAIDHYACM 374
Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 25/151 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+Q G EAL F E LG + + VT +++A G +LD +
Sbjct: 142 MLSGYAQNGLAEEALRLFD--EMLGAYRNSVTWNAMISAYMRVG----------DLDSAR 189
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVT 119
++ R+ V+ +MI+GY+Q G+ A+E F ++ + T DEVT
Sbjct: 190 KLFNTMP-----------GRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVT 238
Query: 120 MVVVLAASSGPGALDFGKSNI-FLTTAIIEM 149
MV V++A GAL+ G + FLT I++
Sbjct: 239 MVSVISACGHLGALELGNWVVRFLTENQIKL 269
Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R VS AM+SGY+Q G EAL F E LG + + VT +++A G LD +
Sbjct: 134 RSVVSWNAMLSGYAQNGLAEEALRLFD--EMLGAYRNSVTWNAMISAYMRVGDLDSARKL 191
Query: 139 -------NIFLTTAIIEMYAK 152
N+ ++I YA+
Sbjct: 192 FNTMPGRNVVTWNSMIAGYAQ 212
>gi|255562657|ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538412|gb|EEF40018.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI Y + GR E E F +L G+ ++ T VL A + G + K++ + +
Sbjct: 285 MIDRYFEDGRREEGFELFAELLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRAD 344
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPFG 106
D S++ S+ Y+ G + R+ R D VS ++I+GY+Q G +EAL+ F
Sbjct: 345 FDPFSFAASALVHMYSKCGNMVNAERVFRGMPQPDLVSWTSLIAGYAQNGHPDEALQYFE 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
L G D +T V VL+A + G +D G
Sbjct: 405 LLLKSGTRPDHITFVGVLSACAHAGLVDKG 434
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPF---GKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----L 52
MISGY + R +EALE + K E+L +++ T+ VL A++ + KE +
Sbjct: 183 MISGYVRHNRPHEALELYRLMKKCENLT--SNKFTVSSVLAAAAAIPCLRIGKEIHGYIM 240
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
+ LD S+ + Y G I A RD V+ AMI Y + GR E E
Sbjct: 241 RTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVNRDVVTWTAMIDRYFEDGRREEGFE 300
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F +L G+ ++ T VL A + G GK F +A++ MY+
Sbjct: 301 LFAELLRSGIKPNDFTFAGVLNACADLGVEGIGKQVHGHMTRADFDPFSFAASALVHMYS 360
Query: 152 K 152
K
Sbjct: 361 K 361
>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
Length = 622
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQIE 55
MISGY+Q G EAL F + + G+H DE+ +V +++A S G +WI +
Sbjct: 347 MISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSACSQLGNIRLASWIEDYITKYS 406
Query: 56 LDLSS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+D+++ + L+ + A G + A RD S +++ GY G ++A++ F
Sbjct: 407 IDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFSYCSLMQGYCLHGSADKAVKLF 466
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ G+ D +VL A G ++ GK N++L E YA +
Sbjct: 467 SRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMKNVYLMVPSGEHYACL 520
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
RD S AMISGY+Q G EAL F + + G+H DE+ +V +++A S G
Sbjct: 339 RDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSACSQLG 390
>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
Length = 850
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 59/211 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++G+ Q G ++AL+ F ++ + GVH + VTMV V++A + L +++ +D +
Sbjct: 314 MVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNE 373
Query: 61 YSLS-----SKTSRYAHSGRIRLAR----------------------------------- 80
++ + + G + +AR
Sbjct: 374 MMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFD 433
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE--SLGVHTDEVTMVVVLAASSGPGAL 133
D + +ISGY Q+GR EAL F +L+ G D+VT++ L+A + GA+
Sbjct: 434 SMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAM 493
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
D G+ N L T++I+MY+K
Sbjct: 494 DIGEWIHGYIKKERIQLNRNLATSLIDMYSK 524
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLE--SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQ 53
+ISGY Q+GR EAL F +L+ G D+VT++ L+A + GA WI +
Sbjct: 446 LISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK 505
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L+ +S Y+ SG + A +D AMI+G + GR A+E
Sbjct: 506 ERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIEL 565
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ V + VT +L A S G +D GK
Sbjct: 566 FLDMQETQVKPNSVTFTNLLCACSHSGLVDEGK 598
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 23/115 (20%)
Query: 61 YSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ L+S YA G + LA +D VS +M++G+ Q G ++AL+ F ++
Sbjct: 276 FVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMR 335
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ GVH + VTMV V++A + L G+ N+ + A I+M+ K
Sbjct: 336 NEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVK 390
>gi|302819822|ref|XP_002991580.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
gi|300140613|gb|EFJ07334.1| hypothetical protein SELMODRAFT_478 [Selaginella moellendorffii]
Length = 560
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 32/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y+Q G F+EA FG++ V V+ +L A S G AKE+ +
Sbjct: 225 MIAAYTQNGHFDEARRVFGEMPRKNV----VSWNTLLAAYSERGMLCEAKEMFDRMPQKD 280
Query: 61 Y-SLSSKTSRYAHSGRI-RLA-----------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
S +S + YA +G I R+A RD +S MI+ Y+Q+G E + F
Sbjct: 281 VISWNSLVTAYAQNGHILRVAAAREIFDTMRERDLISWNTMIAAYAQSGDGEEGIHLFRI 340
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK---------------SNIFLTTAIIEMYAK 152
++ G D +T++ VL A + +L+ GK +++ + TA++ MY
Sbjct: 341 MDLYGEAPDSITLIAVLDACTAARSLERGKTIHAAIRAGTRLDLTTHLLVLTALVNMYGN 400
Query: 153 M 153
+
Sbjct: 401 L 401
>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
Length = 440
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+++G G + EAL F ++ +G+H D++ + VL+A + G + A L+
Sbjct: 39 LVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSG 98
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L S +S S YA G I A +D ++ A+I GY+Q GR E+L +
Sbjct: 99 LGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYN 158
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ + GV D +T + +L A S G ++ G+S
Sbjct: 159 BMIASGVKPDFITFIGLLFACSHAGLVEHGRS 190
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D +S ++++G G + EAL F ++ +G+H D++ + VL+A + L+FGK
Sbjct: 31 KDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQV 90
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++ + +++ MYAK
Sbjct: 91 HANFLKSGLGSSLSVDNSLVSMYAK 115
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
++SGY Q GR EA F K+++ V D TMV ++ A S A ++ +
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L E + + + YA GRI L+R D VS MI+GY G EA
Sbjct: 472 LASETSICN----ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEAT 527
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +LG D VT + +L+A S G + GK
Sbjct: 528 ALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK 562
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S YA +G I A +D VS A++SGY Q GR EA F K+++ V
Sbjct: 379 NSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVE 438
Query: 115 TDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
D TMV ++ A S AL G+ S + A+I+MYAK
Sbjct: 439 PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAK 488
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M+ GY AGR+ EALE F +++ + VL A S GA W+ A +
Sbjct: 265 MVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS 324
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L + ++ YA GR+ + R+ + AMI G + GR +ALE F
Sbjct: 325 IKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS 384
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
KL+ + + +T+V VL A + G +D G
Sbjct: 385 KLQEGRMKPNGITLVGVLTACAHAGFVDKG 414
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD +S +M+ GY AGR+ EALE F +++ + VLAA S GA+D G
Sbjct: 257 RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWV 316
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K + L TA+++MYAK
Sbjct: 317 HAYLKRNSIKLDAVLGTALLDMYAK 341
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M+ GY AGR+ EALE F +++ + VL A S GA W+ A +
Sbjct: 265 MVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNS 324
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L + ++ YA GR+ + R+ + AMI G + GR +ALE F
Sbjct: 325 IKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFS 384
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
KL+ + + +T+V VL A + G +D G
Sbjct: 385 KLQEGRMKPNGITLVGVLTACAHAGFVDKG 414
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD +S +M+ GY AGR+ EALE F +++ + VLAA S GA+D G
Sbjct: 257 RDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWV 316
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K + L TA+++MYAK
Sbjct: 317 HAYLKRNSIKLDAVLGTALLDMYAK 341
>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
Length = 838
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
M+ Y Q G +E+ F +++ G+ ++ T +L + GA L +++ ++
Sbjct: 386 MLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSG 445
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S YA G + AR D VS AMI+GY+Q F EAL+ F
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++E+ G+ +D + ++A +G AL+ G+
Sbjct: 506 EMENQGIRSDNIGFSSAISACAGIQALNQGQQ 537
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 19/140 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q F EAL+ F ++E+ G+ +D + ++A +G A +++ + +S
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG 546
Query: 61 YS--------LSSKT--SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEA 101
YS L+S + Y+ G I A ++ VS AMI+GYSQ G +EA
Sbjct: 547 YSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEA 606
Query: 102 LEPFGKLESLGVHTDEVTMV 121
+ F +++ LG+ + VT V
Sbjct: 607 VSLFEEMKQLGLMPNHVTFV 626
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISG +Q G + AL+ F K++ + D VT+ +L+A + GA K+L I++
Sbjct: 285 LISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMG 344
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+SS + S Y I A + V M+ Y Q G +E+ F
Sbjct: 345 MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ ++ T +L + GALD G+ N+++ + +I+MYAK
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAK 462
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG ++ L F + + V DE T VL A SG A E QI +
Sbjct: 82 VISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTE-QIHAKIIH 140
Query: 61 YSLSSK-------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S Y+ +G + LA+ D VS AMISG SQ GR +EA+
Sbjct: 141 HGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILL 200
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ V VL+A + G+ S F+ A++ +Y++
Sbjct: 201 FCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSR 260
>gi|218191827|gb|EEC74254.1| hypothetical protein OsI_09463 [Oryza sativa Indica Group]
Length = 788
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G+ LAK L
Sbjct: 349 LIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGSIDLAKRLHCLVGRDG 408
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPVS-----------CKAMISGYSQAGRFNEALE 103
++ ++ ++ YA G I+ A++ S AMI+G ++ +A+
Sbjct: 409 LINRNAKLATTFVDMYAKHGCIQTAQEVFSGVDDDFKTLELFNAMINGLARCKFGEKAIA 468
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F + SLG+ D++T V VL+A G + G
Sbjct: 469 LFDGMGSLGLRPDKITFVGVLSACRHSGLVSQG 501
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V+ A+I G+ +AGR+ EA+ F ++E G DE T+V VL+A G G++D K
Sbjct: 341 KDTVAWTALIGGFVRAGRYKEAVVLFEEMEEAGFEADEATIVTVLSACVGYGSIDLAKRL 400
Query: 138 -----------SNIFLTTAIIEMYAK 152
N L T ++MYAK
Sbjct: 401 HCLVGRDGLINRNAKLATTFVDMYAK 426
>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI +Q G NEAL+ +++ G E T+ VL A + A + A ++
Sbjct: 136 MIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAA 195
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+DL+ + ++ YA G ++ A R V+ +M +GY Q + +AL F
Sbjct: 196 MDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFR 255
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K G+ D+ M V+ A +G A+ GK SNIF+ +++I+MYAK
Sbjct: 256 KAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAK 313
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M +GY Q + +AL F K G+ D+ M V+ A +G A I K++ L S
Sbjct: 237 MAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSG 296
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ SS YA G I + R+ V AMISG S+ R E + F
Sbjct: 297 FCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFE 356
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
K++ +G+ ++VT V VL+A G + G+ L T
Sbjct: 357 KMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMT 394
>gi|242051158|ref|XP_002463323.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
gi|241926700|gb|EER99844.1| hypothetical protein SORBIDRAFT_02g041810 [Sorghum bicolor]
Length = 576
Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 23/172 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI+GY+Q G NEA+ F + G+ D++T+V VL++ + G A EL +ELD
Sbjct: 258 MITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVG----ALELGVELDGYA 313
Query: 58 ------LSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ Y ++ YA G + A ++ S A+I G + GR +A+
Sbjct: 314 LHRGLYSNVYVGTALVDMYAKCGDLEKATYVFGKMPFKNEASWNALICGLAFNGRGYDAI 373
Query: 103 EPFGKLES-LGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
+ F + + G+ D++T + VL+A G L++G+ T + ++ K+
Sbjct: 374 QQFELMRNEKGLQPDDITFIGVLSACVHAGLLEYGRRLFSSLTPVFKIIPKI 425
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
+D V+ AMI+GY+Q G NEA+ F + G+ D++T+V VL++ + GAL+ G
Sbjct: 250 KDVVAWNAMITGYAQNGMSNEAIALFHSMREAGLRPDKITLVGVLSSCAAVGALELGVEL 309
Query: 137 ---------KSNIFLTTAIIEMYAK 152
SN+++ TA+++MYAK
Sbjct: 310 DGYALHRGLYSNVYVGTALVDMYAK 334
>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
Length = 687
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+GY+ GR EALE + +L+ + D+VT + VL A + G I + ++
Sbjct: 286 LINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECG 345
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD ++ T+ Y+ G + AR VS M+ Y+Q G E L+
Sbjct: 346 LDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIR 405
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+E GV + +T V VL++ S G + G
Sbjct: 406 KMEQEGVKLNGITFVSVLSSCSHAGLIAEG 435
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 32/182 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ ++ G EAL F ++ G+ + VT + +L + P L + +I L ++
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSG--LEELSRIHLLITE 240
Query: 61 YSLSSKTSR---------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ L T+ +G + +A + + +I+GY+ GR EAL
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
E + +L+ + D+VT + VL A + +L GK S++ + A+ MY
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMY 360
Query: 151 AK 152
+K
Sbjct: 361 SK 362
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSL-----SSKTSRYAHSGRIRLA 79
GV + +T + VL + P A K + + S +SL ++ + Y G + A
Sbjct: 5 GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64
Query: 80 R---DPVSCKA------MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R D + C++ MIS YS + R EA F +++ G D VT + +L A P
Sbjct: 65 RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124
Query: 131 GALDFGKS------------NIFLTTAIIEMYAK 152
L GK ++F+ TA+I MYA+
Sbjct: 125 ENLQHGKHVRESISETSFELDLFVGTALITMYAR 158
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS YS + R EA F +++ G D VT + +L A P K ++ + +S
Sbjct: 82 MISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETS 141
Query: 61 YSL-----SSKTSRYAHS----------GRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ L ++ + YA GR++ ++ ++ A+I+ ++ G EAL F
Sbjct: 142 FELDLFVGTALITMYARCRSPENAAQVFGRMK-QKNLITWSAIITAFADHGHCGEALRYF 200
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALD 134
++ G+ + VT + +L + P L+
Sbjct: 201 RMMQQEGILPNRVTFISLLNGFTTPSGLE 229
>gi|218200771|gb|EEC83198.1| hypothetical protein OsI_28453 [Oryza sativa Indica Group]
Length = 639
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIEL 56
++G+ AG EAL F ++++ GV D+ +V VL A + G W+ +
Sbjct: 108 LAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKANNI 167
Query: 57 DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
++ + ++ YA G ++LA ++ ++ MI G + GR +EALE F +
Sbjct: 168 RITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQ 227
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E LGV D++ + L A + G +D G+
Sbjct: 228 MERLGVKPDDIAFIGALCACTHTGLVDKGR 257
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + GR +EALE F ++E LGV D++ + L A + G +EL + +
Sbjct: 208 MIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSM-VRK 266
Query: 61 YSLSSKTSRY-------AHSGRIRLARD-----PVSCKAMISGYSQAG-RFNEALE 103
Y + K Y A +G + AR+ P+ A+I G AG RF++ +E
Sbjct: 267 YGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVE 322
Score = 42.0 bits (97), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 12/79 (15%)
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-------- 137
K ++G+ AG EAL F ++++ GV D+ +V VL A + G L+ GK
Sbjct: 105 KLGLAGFLLAGDGREALGLFARMQADGVIPDDTVLVGVLVACAQLGVLEQGKWVHGYLKA 164
Query: 138 SNI----FLTTAIIEMYAK 152
+NI FL TA+++MYAK
Sbjct: 165 NNIRITVFLGTALVDMYAK 183
>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g22410, mitochondrial; Flags: Precursor
gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
Length = 681
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
+I+GY + G +A+ + +ES GV D+VTM+ ++++ S G KE
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENG 287
Query: 53 -------------------------QIELDLSSYSLSSKT---SRYAHSGRIRLAR---- 80
+I +L ++ S T S YA G + ++R
Sbjct: 288 LRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFD 347
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D V AMI G QA R +AL F ++++ DE+TM+ L+A S GALD
Sbjct: 348 DMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDV 407
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G N+ L T++++MYAK
Sbjct: 408 GIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G QA R +AL F ++++ DE+TM+ L+A S GA L + I +
Sbjct: 360 MIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGA--LDVGIWIHRYIEK 417
Query: 61 YSLS-------SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
YSLS S YA G I A R+ ++ A+I G + G + A+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISY 477
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ G+ DE+T + +L+A G + G+
Sbjct: 478 FNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRD 511
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 41 SGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISG 91
S G IL L++ L+L S+ ++ +A G + AR D VS +I+G
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231
Query: 92 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------N 139
Y + G +A+ + +ES GV D+VTM+ ++++ S G L+ GK
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 140 IFLTTAIIEMYAK 152
I L A+++M++K
Sbjct: 292 IPLVNALMDMFSK 304
>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 638
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI +Q G NEAL+ +++ G E T+ VL A + A + A ++
Sbjct: 136 MIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHAFAIKAA 195
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+DL+ + ++ YA G ++ A R V+ +M +GY Q + +AL F
Sbjct: 196 MDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFR 255
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K G+ D+ M V+ A +G A+ GK SNIF+ +++I+MYAK
Sbjct: 256 KAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAK 313
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M +GY Q + +AL F K G+ D+ M V+ A +G A I K++ L S
Sbjct: 237 MAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSG 296
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ SS YA G I + R+ V AMISG S+ R E + F
Sbjct: 297 FCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFE 356
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
K++ +G+ ++VT V VL+A G + G+ L T
Sbjct: 357 KMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMT 394
>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 980
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q+G + EAL F +++ G + T L+ + A L K++ +
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ + Y G I A +D VS M++GY++ G +AL F
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
+++ GV DE+TMV VL+A S G LD G + T
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY Q G +EA F ++ +EV+ ++ +A+EL + +
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRN 327
Query: 61 YS-LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ + Y G I AR D VS A+I+GY+Q+G + EAL F +++
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G + T L+ + AL+ GK + F+ A++ MY K
Sbjct: 388 DGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441
>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
Length = 836
Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y+QAGR EAL + + S + + VT VL+A S G + +++ +L+ +
Sbjct: 594 MIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKA 653
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L +S S YA G +R A RD S M++ ++ G ALE
Sbjct: 654 EELDVAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTGMVAAFAHHGHSARALELVR 713
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
++E GV D VT VL A S G+L+ G ++ F++ A+
Sbjct: 714 EMELCGVSPDAVTFQSVLHACSHEGSLERGWAS-FVSMAV 752
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 82/181 (45%), Gaps = 34/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MIS Y+Q+GR +EA+E + +ES V + VT V V+ A +G G I + +Q+ L
Sbjct: 291 MISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVI--RGIQVHGRLV 348
Query: 60 SYSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
S L S+ Y G + A RD + M+S YS+ G + +E
Sbjct: 349 SLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIE 408
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
+ E++ V + VT VL A S L G+ +++ + TA++ +Y
Sbjct: 409 AY---EAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSLYI 465
Query: 152 K 152
K
Sbjct: 466 K 466
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------- 138
MI Y+Q G NEA F ++ES G+ + VT + VL A S L FGK
Sbjct: 95 MIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVHAYISASE 154
Query: 139 ---NIFLTTAIIEMYAK 152
+I L T+++ MYAK
Sbjct: 155 FKWDISLQTSLVNMYAK 171
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 77 RLAR-DPVSCKAMISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLAASSGPGALD 134
RL R D +S MIS Y+Q+GR +EA+E + +ES V + VT V V+ A +G G +
Sbjct: 279 RLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVI 338
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G ++++ + +A+++MY K
Sbjct: 339 RGIQVHGRLVSLGLETDVAVGSALVQMYVK 368
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ GY EAL + ++ GV + VT L A S G+ + A
Sbjct: 491 MMVGYIDHDCDTEALRLYARMHEAGVEANNVTFANALKACSKIKDIETGSKVEAMITTKG 550
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEP 104
+ + ++ + YA G + A RD V AMI+ Y+QAGR EAL
Sbjct: 551 FETDVVTDTALLNMYAACGDLEAAKRVFGSRRGERRDVVFWTAMIASYAQAGRGEEALAL 610
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + S + + VT VL+A S G + G+ ++ + +++ MYA+
Sbjct: 611 YKTMLSEEIKPNSVTYTSVLSACSSLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYAR 670
>gi|326492712|dbj|BAJ90212.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326506700|dbj|BAJ91391.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL--TASSGP---GAWILAKELQIE 55
M+S YS+A RF++A++ F ++ GV + +V VL AS G GAW+ A + +
Sbjct: 234 MVSAYSRAARFHDAVDLFSAMQVDGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKQD 293
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPV------------SCKAMISGYSQAGRFNEALE 103
+ +++ + + Y G I AR S AM+ G + G+ EAL
Sbjct: 294 VGMNALVVIALVDMYCKCGSIHKARQVFDTSRSQGLAKLSSWNAMMLGLAAHGQCQEALA 353
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F +LES G+ D VT + +L A G D K+
Sbjct: 354 LFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKA 388
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVT--MVVVLTASSGPGAWILAKELQIELDL 58
+ + Y++ GR ++ G + LG+ D T + + ASSG LA Q ++
Sbjct: 137 LFAAYARLGRADDGAALHGMVLKLGLAGDAYTRNTTIAMYASSGRADEALALFGQCQV-F 195
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ +S + +GR+ AR + AM+S YS+A RF++A++ F ++
Sbjct: 196 DVVACNSAIVALSRAGRVDEARAVFDGMPSRTVATWSAMVSAYSRAARFHDAVDLFSAMQ 255
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
GV + +V VL + GAL+ G N + A+++MY K
Sbjct: 256 VDGVEPNANVLVSVLGCCASLGALEQGAWVHAYIDKQDVGMNALVVIALVDMYCK 310
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G + G+ EAL F +LES G+ D VT + +L A G AK L +
Sbjct: 338 MMLGLAAHGQCQEALALFSELESYGLRPDNVTFIAMLMAYGHSGMADEAKALFASM-ARE 396
Query: 61 YSLSSKTSRY-------AHSGRIRLARDPVSCKAM 88
Y ++ Y A +GR+R A D + M
Sbjct: 397 YGVTPGIEHYGCLVDALARAGRLREAEDTIRAMPM 431
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI GYSQAG EA+ F ++ GV +E T VLT+ + G G I A ++
Sbjct: 146 MIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFL 205
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y +S S YA G + + ++ VS A+I GY+Q G+ EAL+ +
Sbjct: 206 GKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDAYR 265
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G+ D VT++ +L + G +D G
Sbjct: 266 MMRATGLKPDNVTLLGLLFGCNHTGLVDEG 295
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AMI GYSQAG EA+ F ++ GV +E T VL + + G L G+S
Sbjct: 138 RNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSI 197
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +++ YA+
Sbjct: 198 HASAIKFLGKLDVYIGNSLVSFYAR 222
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG---------- 129
RD +S A I ++ GR +AL F ++ + GV +E T VL +++
Sbjct: 4 RDVISATAAIGALTRGGRHRDALALFSRVLADGVAPNEFTFGTVLRSATALRVRAPRVGV 63
Query: 130 ---PGALDFG-KSNIFLTTAIIEMYAKM 153
A G SN+F+ +A+++ YAKM
Sbjct: 64 QLHACAAKLGLCSNVFVGSALLDHYAKM 91
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ R ++A+ F ++ V DE+T++ VL+A + GA L + ++ +D+
Sbjct: 214 LISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHG 273
Query: 61 YSLS-----SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + YA SG I+ A + V+ MI+G + G +ALE F
Sbjct: 274 LHRNVPLHNALIDMYAKSGNIKRALLIFESMKHKTIVTWTTMIAGLALHGLGTQALEMFS 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++E V +E+T + VL+A S G + +S
Sbjct: 334 RMERDRVKPNEITFIAVLSACSHVGLVQLARS 365
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S A+ISGY+ R ++A+ F ++ V DE+T++ VL+A + GAL+ G+
Sbjct: 206 RNLISWTALISGYAHINRPHQAIAIFRTMQLQNVVPDEITLLAVLSACAQLGALELGEWI 265
Query: 138 ----------SNIFLTTAIIEMYAK 152
N+ L A+I+MYAK
Sbjct: 266 RNYIDIHGLHRNVPLHNALIDMYAK 290
>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKEL------- 52
MI+G+ Q G E L F +++ GV ++V++V VL A S K++
Sbjct: 309 MINGHVQNGALEEGLVLFHEMQVRDGVEPNKVSLVSVLPACSAVAGLTGVKQIHGYAIRK 368
Query: 53 QIELDLSSYS----LSSKTSRYAHSGRI----RLARDPVSCKAMISGYSQAGRFNEALEP 104
Q D+S + + SK H+ ++ RDP+S +MISGY G+ EA+
Sbjct: 369 QFNNDVSLCNALIDMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFV 428
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ K+ LG D +T+V VL+A S G +D G
Sbjct: 429 YNKMLQLGNKPDMITIVGVLSACSRAGLVDEG 460
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY Q GR EA F K+++ V D TMV ++ A S A + + +
Sbjct: 412 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRG 471
Query: 61 YSLSSKTS-------RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L+S+TS YA GRI L+R D VS MI+GY G EA
Sbjct: 472 --LASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATAL 529
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ +LG D VT + +L+A S G + GK
Sbjct: 530 FLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK 562
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS A++SGY Q GR EA F K+++ V D TMV ++ A S AL G+
Sbjct: 404 KDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS 463
Query: 138 ----------SNIFLTTAIIEMYAK 152
S + A+I+MYAK
Sbjct: 464 HGSVIIRGLASETSICNALIDMYAK 488
>gi|6041788|gb|AAF02108.1|AC009755_1 hypothetical protein [Arabidopsis thaliana]
Length = 332
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+ISGY + +A F ++ +G+ D+ T VL AS+G G I A+ ++ E
Sbjct: 3 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 62
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L RD V+ AMI GY+ G+ EA++ F
Sbjct: 63 LQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFE 122
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
++ + + VT + +L A + G +D G ++
Sbjct: 123 RMILENIKPNHVTFISILRACAHMGLIDKGLEYFYM 158
>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 766
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q+G + EAL F +++ G + T L+ + A L K++ +
Sbjct: 365 IIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMG 424
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ + Y G I A +D VS M++GY++ G +AL F
Sbjct: 425 YGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFE 484
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
+++ GV DE+TMV VL+A S G LD G + T
Sbjct: 485 SMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMT 522
Score = 48.5 bits (114), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY Q G +EA F ++ +EV+ ++ +A+EL + +
Sbjct: 272 MVSGYVQNGMLDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRN 327
Query: 61 YS-LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ + Y G I AR D VS A+I+GY+Q+G + EAL F +++
Sbjct: 328 ISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G + T L+ + AL+ GK + F+ A++ MY K
Sbjct: 388 DGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFK 441
>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 871
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MI GY+Q G ALE F + + + VT+ +L+A + ++ K L + +
Sbjct: 313 MIVGYTQRGYPQAALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYG 372
Query: 58 LSSYSL-SSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
L SL +S YA G I + +D VS ++ISGY+Q+G EAL+ F +
Sbjct: 373 LDDTSLRNSLVDMYAKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNR 432
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
+ D VT+V VL+A + GA G S+I++ TA++ YAK
Sbjct: 433 MRMESFLPDAVTVVGVLSACASVGAHQIGLSLHGFALKYGLVSSSIYVGTALLNFYAK 490
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q+G EAL+ F ++ D VT+V VL+A + GA QI L L
Sbjct: 413 VISGYAQSGSAYEALDLFNRMRMESFLPDAVTVVGVLSACASVGAH------QIGLSLHG 466
Query: 61 YSL------------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFN 99
++L ++ + YA G AR + V+ AMI G G
Sbjct: 467 FALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGMGEKNAVTWAAMIGGCGMQGDGV 526
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+L F + + +EV +LAA S G ++ G
Sbjct: 527 GSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEG 563
Score = 38.9 bits (89), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 75/183 (40%), Gaps = 31/183 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI Y Q E L F ++ + + T+ ++TA + G W+ ++
Sbjct: 206 MIVAYVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNG 265
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNE 100
++++SY +S + Y G I AR D V AMI GY+Q G
Sbjct: 266 IEINSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQA 325
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEM 149
ALE F + + + VT+ +L+A + + GK + L ++++M
Sbjct: 326 ALELFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSLRNSLVDM 385
Query: 150 YAK 152
YAK
Sbjct: 386 YAK 388
>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
Length = 721
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 87/184 (47%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGR-FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW--ILAK--ELQIE 55
+I+ Y+Q+G ++AL+ F K+ GV T V VL A + + I A+ E ++
Sbjct: 212 LIAAYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQ 271
Query: 56 LDLSSYSLSSKT-SRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPF 105
D+ + + + YA G + +ARD VS MI+ ++Q G E+++ F
Sbjct: 272 FDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVF 331
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------------NIFLTTAIIE 148
+++ G+ D+ T V+ A S GAL+FGK N+ + TA++
Sbjct: 332 REMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVS 391
Query: 149 MYAK 152
MY K
Sbjct: 392 MYGK 395
>gi|357125803|ref|XP_003564579.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Brachypodium distachyon]
Length = 456
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI G SQAG EA+ F ++ GV ++ T VLT+ + GA + A +++
Sbjct: 144 MIGGCSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVLTSVANAGALGVGRSVHASAIKLL 203
Query: 56 LDLSSYSLSSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y +S S YA G R ++ V+ A+I GY+Q GR EAL +
Sbjct: 204 GKLDVYIGNSLVSCYARCGSLEDSVLAFRKMKQKNLVTWNALICGYAQNGRGQEALGAYE 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIE 148
+ ++G+ D VT++ +L + G +D G S TA +E
Sbjct: 264 TMRAMGLKADNVTLLGLLFGCNHAGLVDEGYS--LFKTAQLE 303
Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AMI G SQAG EA+ F ++ GV ++ T VL + + GAL G+S
Sbjct: 136 RNVVSWNAMIGGCSQAGLNEEAVGLFLEMCRQGVRPNDSTFPCVLTSVANAGALGVGRSV 195
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +++ YA+
Sbjct: 196 HASAIKLLGKLDVYIGNSLVSCYAR 220
Score = 36.6 bits (83), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD V+ A I ++ R +A+ F ++ S G+ +E T VL +++ L G
Sbjct: 4 RDVVAATAAIGALTRGSRHRDAVTLFSRVLSDGIPPNEFTFGTVLRSATALRDLRVGTQL 63
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN+F+ +A+++ YAKM
Sbjct: 64 HACVAKFGLCSNVFVGSALVDHYAKM 89
>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
Length = 785
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+ G+ A + F +L+ + +L+ +S W + +++ + +++
Sbjct: 282 IISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTT 341
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S YA G+ A R V AMIS Y Q G + E L+ F
Sbjct: 342 ADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFN 401
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+ V D+ T +L AS+ +L GK SN+F +A++++YAK
Sbjct: 402 KMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAK 459
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G + E L+ F K+ V D+ T +L AS+ + L K+L + S
Sbjct: 383 MISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG 442
Query: 61 Y-----SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S S+ YA G I+ A R+ VS AMIS Y+Q G L+ F
Sbjct: 443 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFK 502
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D V+ + VL+A S G ++ G
Sbjct: 503 EMVLSGLQPDSVSFLGVLSACSHSGLVEEG 532
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 41/168 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--GAWILAKELQIELDL 58
+I GYSQ +F EA E F +++ G D VT V +L+ +G G I + QI
Sbjct: 115 LIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQI---- 170
Query: 59 SSYSLSSKTSRYAHSGRIRLARDP--VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
I+L D + ++ Y ++ R + A + F ++ + D
Sbjct: 171 -----------------IKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEI----D 209
Query: 117 EVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
T VL A+ G + G+ N+F++ A+++ Y+K
Sbjct: 210 SFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSK 257
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
R V+ +I GYSQ +F EA E F +++ G D VT V +L+ +G
Sbjct: 107 RTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNG 156
>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 903
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+ISGY + +A F ++ +G+ D+ T VL AS+G G I A+ ++ E
Sbjct: 574 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 633
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L RD V+ AMI GY+ G+ EA++ F
Sbjct: 634 LQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFE 693
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + + VT + +L A + G +D G
Sbjct: 694 RMILENIKPNHVTFISILRACAHMGLIDKG 723
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
MI+GYSQ +AL F +L S G+ DE+++ V A S G + LA +
Sbjct: 353 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 412
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LD+ ++ + K A + R+ RD VS A+I+ + Q G+ E L F
Sbjct: 413 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 472
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + DE T +L A +G G+L +G SN + ++I+MY+K
Sbjct: 473 SMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ GY Q GR EA++ F ++ G+ D T+ ++A + G+ K +
Sbjct: 339 MVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAG 398
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L +S + Y G I RL RD VS AM+S Y+Q GR EA++ F
Sbjct: 399 LIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFD 458
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ LG+ D VT+ V++A S G ++ G+
Sbjct: 459 KMVQLGLKPDGVTLTGVISACSRAGLVEKGQ 489
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI G +Q G EA+E F +++ G+ D+ VL A G GA I+
Sbjct: 238 MIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTN 297
Query: 52 LQIELDLSSYSLS----SKTSRYAHSGRIRLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
LQ + + S + K YA + R+ ++ VS AM+ GY Q GR EA++ F
Sbjct: 298 LQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAGEAVKIFL 357
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D T+ ++A + +L+ G
Sbjct: 358 DMQRSGIDPDHYTLGQAISACANISSLEEG 387
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ +D VS AMI G +Q G EA+E F +++ G+ D+ VL A G GA++ G+
Sbjct: 228 MEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGR 287
Query: 138 ------------SNIFLTTAIIEMYAK 152
+I++ +A+I+MY K
Sbjct: 288 QIHACIIRTNLQDHIYVGSALIDMYCK 314
>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g42920, chloroplastic; Flags: Precursor
gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MISG+ + GRF +AL+ F +++ V D TMV +L A +S G WI ++
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+L+S +++ Y G I + C +MI G + G A++ F
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFS 348
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+LE G+ D V+ + VL A + G
Sbjct: 349 ELERSGLEPDSVSFIGVLTACAHSG 373
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS +MISG+ + GRF +AL+ F +++ V D TMV +L A + GA + G+
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 139 -----------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCK 305
>gi|302142722|emb|CBI19925.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI G+SQ EAL+ F ++ LG+ D+ ++ V++A + G I A+ I
Sbjct: 423 MIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIG 482
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S Y G + R D V +M+ GY+ G EAL F
Sbjct: 483 LEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFD 542
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
++ S+GV ++T V VL+A G ++ G+ F+
Sbjct: 543 QMRSVGVQPTDITFVGVLSACDHCGLVEEGRKCYFI 578
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLARDPVSCKA---------MISGYSQAGRFNEALEPFGKLE 109
++SLS+ S YA GR+ AR K+ MISGY EALE F +
Sbjct: 274 DAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMR 333
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
GV D T VL+A S G +D G ++I + +A+++MY+K
Sbjct: 334 RKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSK 388
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 29/173 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MISGY EALE F + GV D T VL+A S G I+ + +Q+
Sbjct: 312 MISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLG--IIDQGIQVHAHVYK 369
Query: 56 --------LDLSSYSLSSKTSRYAHSGRI---RLARDP----------VSCKAMISGYSQ 94
+D + + SK R + ++ A D +S +MI G+SQ
Sbjct: 370 VGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVLISWNSMIVGFSQ 429
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAII 147
EAL+ F ++ LG+ D+ ++ V++A + +L+ G+ IF II
Sbjct: 430 NACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQ-IFARATII 481
>gi|356532565|ref|XP_003534842.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g50990-like [Glycine max]
Length = 569
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 26/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI GY + RF +AL F ++ S V D T V+TA + GA W+ L E +
Sbjct: 171 MIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTFASVVTACARLGALGNAKWVHGLMVEKR 230
Query: 54 IELDLSSYSLSSK-TSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALE 103
+EL+ Y LS+ YA GRI +ARD VS AMISG + G +A
Sbjct: 231 VELN---YILSAALIDMYAKCGRIDVSRQVFEEVARDHVSVWNAMISGLAIHGLAMDATL 287
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
F ++E V D +T + +L A S G ++ G+ N F+ +E Y M
Sbjct: 288 VFSRMEMEHVLPDSITFIGILTACSHCGLVEEGRKYFGMMQNRFMIQPQLEHYGTM 343
Score = 43.9 bits (102), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 70/164 (42%), Gaps = 39/164 (23%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q R + AL F ++ D +M +V+ + G +AK++ ++ +
Sbjct: 111 LISTYAQCHRPHIALHVFSRI------LDLFSMNLVIESLVKGGQCDIAKKVFGKMSV-- 162
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
RD V+ +MI GY + RF +AL F ++ S V D T
Sbjct: 163 -------------------RDVVTWNSMIGGYVRNLRFFDALSIFRRMLSAKVEPDGFTF 203
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V+ A + GAL K N L+ A+I+MYAK
Sbjct: 204 ASVVTACARLGALGNAKWVHGLMVEKRVELNYILSAALIDMYAK 247
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 10 RFNEALEPFGKLESLGVHTDEV---TMVVVLTASSGPG--AWILAKELQIELDLSSYSLS 64
RF ++ + + LG+ T+ V T +V + + G AW++ E+ + +S ++
Sbjct: 108 RFGGSIHAY--VRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMI 165
Query: 65 SKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
R G + RD +S +MI G+ + G F +ALE F +++ GV D V
Sbjct: 166 DGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYV 225
Query: 119 TMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
T++ VLAA + GAL G K NI ++ ++I+MY++
Sbjct: 226 TIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSR 271
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
+IS R +AL F ++S G D+VT +++L A + GA + + ++
Sbjct: 240 LISCCIHNRRTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEE 299
Query: 59 SSYS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
Y +S + Y+ GR+ A R+ VS AMISG++ G EA+E
Sbjct: 300 HGYDGALNLCNSLITMYSRCGRLEKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEA 359
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ LGV D+ T+ VL+A S G +D G
Sbjct: 360 FEQMQQLGVSPDDQTLTGVLSACSHCGLVDDG 391
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 16/95 (16%)
Query: 70 YAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
+ H R RD V AMI+GY+Q GR NEALE F ++S + ++VT+V VL+A +
Sbjct: 64 FDHMAR----RDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQ 119
Query: 130 PGALDFGK------------SNIFLTTAIIEMYAK 152
G+++ G+ SN+++ +A++ MY+K
Sbjct: 120 LGSVETGERIGSYVESRGLISNVYVASALLGMYSK 154
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIE--- 55
MI+GY+Q GR NEALE F ++S + ++VT+V VL+A + G+ + + +E
Sbjct: 78 MIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRG 137
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y S+ Y+ G I A RD V+ +MI G + G +A+ +
Sbjct: 138 LISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYN 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ + V + +T V +L A + G ++ G
Sbjct: 198 RMKEIEVKPNNITFVGLLTACTHAGHVELG 227
>gi|302810986|ref|XP_002987183.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
gi|300145080|gb|EFJ11759.1| hypothetical protein SELMODRAFT_21339 [Selaginella moellendorffii]
Length = 475
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIELD-- 57
M++ + +G EA+ F +++ G+ ++E+T V L A PG+ L K++ +
Sbjct: 152 MVAALAGSGHGGEAILLFRRMDLEGIASNEITFVAALVACCDCPGSLALGKQIHERIIAG 211
Query: 58 ------------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
++ Y SS+ + R L R S +M++ Y+Q G + AL+
Sbjct: 212 GLGSNVFLANSLVTMYGRSSEVAEAEAVFRSILRRSLTSWNSMLAAYAQNGHSSVALDVH 271
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ GV +DE T V +L A + G L G+ +N F+ TA+++MY K
Sbjct: 272 VRMDHEGVASDEFTFVTLLDACAMAGTLQLGRQIHDRTDAMGLMTNGFVATALLDMYGK 330
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M++ Y+Q G + AL+ +++ GV +DE T V +L A + G L +++ D
Sbjct: 254 MLAAYAQNGHSSVALDVHVRMDHEGVASDEFTFVTLLDACAMAGTLQLGRQIHDRTDAMG 313
Query: 58 --LSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ Y G + AR V+ AMI+ Y+Q GR EALE +G
Sbjct: 314 LMTNGFVATALLDMYGKRGSLGEARAVFDRHCTGSVVAWTAMIASYAQHGRSAEALELYG 373
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ + VT V +L+A S G +D G
Sbjct: 374 GMALEGLAPNSVTFVNILSACSYYGMVDQG 403
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Q G AL +++ GV DE+T +L A SG +E+ L
Sbjct: 51 MIVASVQNGDGVLALRLLREMDCEGVAPDEMTFSSILGALSGKRDLRQGREIHARLRSGG 110
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y+ G I AR D VS +M++ + +G EA+ F
Sbjct: 111 HESNLVVATALINMYSSCGSIAEAREVFSKTNSRDVVSMSSMVAALAGSGHGGEAILLFR 170
Query: 107 KLESLGVHTDEVTMVVVL-AASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ ++E+T V L A PG+L GK SN+FL +++ MY +
Sbjct: 171 RMDLEGIASNEITFVAALVACCDCPGSLALGKQIHERIIAGGLGSNVFLANSLVTMYGR 229
>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+IS YS G EAL F ++ GV T+ T L A G I A L+
Sbjct: 131 IISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSG 190
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y ++ + Y G++ A +D V+ +M++G+ Q G ++EALE F
Sbjct: 191 RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFY 250
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
L++ + D+V+++ ++ AS G L GK SNI + +I+MYAK
Sbjct: 251 DLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAK 308
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y G N+ALE F ++ G+ D VT+V +L+A KE+ +
Sbjct: 433 MISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKG 492
Query: 61 YSLSSKTSR-----YAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ L S YA G + A +C AMIS Y G A+E F
Sbjct: 493 FILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFM 552
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ + D +T + +L A S G ++ GKS
Sbjct: 553 RMKDEKIIPDHITFLALLYACSHSGLVNEGKS 584
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDLS 59
+GY+Q + +ALE +L+ G+ D + +L A G KE+ I LS
Sbjct: 335 AGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLS 394
Query: 60 SYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
L + Y G I A +D VS +MIS Y G N+ALE F ++
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMK 454
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK 137
G+ D VT+V +L+A L GK
Sbjct: 455 ETGLEPDYVTLVSILSAVCSLSTLKKGK 482
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M++G+ Q G ++EALE F L++ + D+V+++ ++ AS G + KE+
Sbjct: 232 MLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNG 291
Query: 54 ----IELDLSSYSLSSKTSRYAHSGR---IRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I + + + +K ++ GR + +D +S +GY+Q + +ALE
Sbjct: 292 FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+L+ G+ D + +L A G L
Sbjct: 352 QLQMEGMDVDATMIGSILLACRGLNCL 378
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M+ GY G ALE + ++ LGV D T V+L A GA I ++
Sbjct: 29 MMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYG 88
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNEALEPF 105
D + ++S + YA I AR D VS ++IS YS G EAL F
Sbjct: 89 CDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLF 148
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ GV T+ T L A + G ++++ A++ MY +
Sbjct: 149 SEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVR 207
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
MISGY Q + EAL+ F +++S + DEVT+V VL A + GA W+ +
Sbjct: 427 MISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 486
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+LD ++ ++ YA G I +R + S A+I+ ++ GR EAL F
Sbjct: 487 KLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLF 546
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI-----FLTTAIIEMYAKM 153
++ G +E+TM+ VL+A + G ++ GK F T IE Y M
Sbjct: 547 MEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCM 599
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 27/175 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+I GY ++G + A GKL + D ++ A G A++L E+ + S
Sbjct: 334 LIGGYVRSGDMDNA----GKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERS 389
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S + Y+ +G + AR + S AMISGY Q + EAL+ F +++S
Sbjct: 390 VVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQS 449
Query: 111 -LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ DEVT+V VL A + GALD G + TA+I+MYAK
Sbjct: 450 TTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAK 504
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 10 RFNEALEPFGKLESLGVHTDEV---TMVVVLTASSGPG--AWILAKELQIELDLSSYSLS 64
RF ++ + + LG+ T+ V T +V + + G AW++ E+ + +S ++
Sbjct: 108 RFGGSIHAY--VRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMI 165
Query: 65 SKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
R G + RD +S +MI G+ + G F +ALE F +++ GV D V
Sbjct: 166 DGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYV 225
Query: 119 TMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
T++ VLAA + GAL G K NI ++ ++I+MY++
Sbjct: 226 TIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSR 271
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 23/156 (14%)
Query: 20 KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLSSYSLSSKTSRYAHSGRIRL 78
+L L D V V+++ G + A+EL + D S ++ S YA++G + L
Sbjct: 46 RLFDLAPQCDVVLWNVIVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVEL 105
Query: 79 ---------ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASS 128
AR+ S +I GY + G F EALE F ++ GV ++ T+V VL+A S
Sbjct: 106 FVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACS 165
Query: 129 GPGALDFG------------KSNIFLTTAIIEMYAK 152
G L+ G K N+F+ A+I+MYAK
Sbjct: 166 RLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAK 201
Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKELQIELDLS 59
+I GY + G F EALE F ++ GV ++ T+V VL+A S G + K + + D
Sbjct: 124 LIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSI 183
Query: 60 SYS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
Y ++ YA G I A +D ++ +I+ + +AL F
Sbjct: 184 GYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLF 243
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
++ G D VT V +L+A + G + G + +L IE Y M
Sbjct: 244 EGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCM 297
>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
Length = 806
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+ Y+ G +ALE F ++ + GV +E+T VL A GAWI + ++
Sbjct: 427 MIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESG 486
Query: 56 LDLSS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S ++ +S YA G + A +D V+ +I+ Q+G AL+ +
Sbjct: 487 LDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLY 546
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+H D T+ +L A + G L G + + A+ MYAK
Sbjct: 547 DRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAK 605
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+ Q+G AL+ + ++ G+H D T+ +L A + G + ++ L+ +
Sbjct: 529 IIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRSK 588
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ ++ ++ + YA G + RL R D + +M++ +SQ G + ALE +
Sbjct: 589 LEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYA 648
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ES GV +EVT + VL + S G + G+
Sbjct: 649 EMESEGVRPNEVTFIPVLISCSQAGLVAEGR 679
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-WILAKELQIE---- 55
MI+ +Q+G ++ A++ F + + G++ +E T V++A + G IL + +I
Sbjct: 321 MIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQIT 380
Query: 56 ---LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEA 101
+D +S + YA SG + AR+ VS MI+ Y+ G +A
Sbjct: 381 ASGIDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQA 440
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIE 148
LE F ++ + GV +E+T VLAA G L G S+ F ++++
Sbjct: 441 LEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVD 500
Query: 149 MYAK 152
MYAK
Sbjct: 501 MYAK 504
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+ Y+Q G + + G++ LG+ D+ ++ + G A+ + EL DL
Sbjct: 130 VFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLD 189
Query: 60 SYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ +S A G + RL R V+ +MISGY + R EALE F K++
Sbjct: 190 VVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELFRKMQG 249
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V E TMV +L+A + GAL G+ N+ + TAII+MY K
Sbjct: 250 ERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCK 303
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY + R EALE F K++ V E TMV +L+A + GA W+ +
Sbjct: 227 MISGYVRNKRLMEALELFRKMQGERVEPSEFTMVSLLSACAHLGALKHGEWVHDYVKRGH 286
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP--------VSC-KAMISGYSQAGRFNEALEPFG 106
+L+ L++ Y G I A + +SC ++I G + G +A+E F
Sbjct: 287 FELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTRGLSCWNSIIIGLALNGYERKAIEYFS 346
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
KLE+ + D V+ + VL A GA+ GK+ + +
Sbjct: 347 KLEASDLKPDHVSFIGVLTACKYIGAV--GKARDYFS 381
>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
Length = 861
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+ISGY + +A F ++ +G+ D+ T VL AS+G G I A+ ++ E
Sbjct: 532 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 591
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L RD V+ AMI GY+ G+ EA++ F
Sbjct: 592 LQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFE 651
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + + VT + +L A + G +D G
Sbjct: 652 RMILENIKPNHVTFISILRACAHMGLIDKG 681
Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
MI+GYSQ +AL F +L S G+ DE+++ V A S G + LA +
Sbjct: 311 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 370
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LD+ ++ + K A + R+ RD VS A+I+ + Q G+ E L F
Sbjct: 371 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 430
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + DE T +L A +G G+L +G SN + ++I+MY+K
Sbjct: 431 SMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487
>gi|115467784|ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa Japonica Group]
gi|125597005|gb|EAZ36785.1| hypothetical protein OsJ_21122 [Oryza sativa Japonica Group]
Length = 992
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
++S Q + A + F +++ L V TD VTM+ +++A S G LA+ LQ
Sbjct: 716 ILSACVQCKQAGVAFDYFRQIQFLNVKTDAVTMLALISACSQLGKADLAECVTAIALQKG 775
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + L++ ++ G I AR D VS MI+ YS G AL+ F
Sbjct: 776 FDGTIIVLNALIDMHSRCGSISFARKIFDISMEKDSVSWSTMINAYSMHGDGGSALDLFL 835
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ S G+ D++T V VL+A S G L+ G++
Sbjct: 836 MMVSSGIKPDDITFVSVLSACSRSGFLEQGRT 867
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 28/176 (15%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
+ +S G E L + ++ + G +D T V+ A + L KE+ + + +
Sbjct: 116 VRCFSDHGFHRELLGLYREVCAFG--SDNFTFPPVIRACAAVSCLRLGKEVHCRVVRTGH 173
Query: 62 --SLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
++ +T+ YA SG++ L+R D +S AMISGYS G EA E +
Sbjct: 174 GGNVGVQTALLDMYAKSGQVDLSRRVFDGMKSRDLISWNAMISGYSLNGCLLEAAEALKQ 233
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF----LTTAIIEMYA 151
++ G + ++V +++ SG G D G KS + LT A I MYA
Sbjct: 234 MQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSGVLGDESLTPAFISMYA 289
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG--------------AW 46
MISGYS G EA E +++ G + ++V +++ SG G +
Sbjct: 214 MISGYSLNGCLLEAAEALKQMQQDGFRPNASSLVGIVSMVSGLGVRDAGDPLHAFALKSG 273
Query: 47 ILAKELQIELDLSSYS----LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
+L E +S Y+ LSS S + S L + VSC +MIS Q G + +A
Sbjct: 274 VLGDESLTPAFISMYAAFGHLSSSLSLFHQS----LVDNLVSCNSMISVCMQHGAWEKAF 329
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
F + G+ + VT+V +L S ++ G+S + + +A++ MY
Sbjct: 330 GVFRLMRCKGLVPNLVTVVSILPCCSNFFGINHGESVHGMVIKFGLAEQVSVVSALVSMY 389
Query: 151 AKM 153
+K+
Sbjct: 390 SKL 392
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+ISGY ++N + +++ GV D +T++ V++ G I A ++
Sbjct: 416 LISGYLVNNKWNMVMGSVRRMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSR 475
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+L+ +++ + YA G++ + R +S +ISG+++ G L F
Sbjct: 476 LELNESVMNALLAMYADCGQLSICCKLFHTMEVRTLISWNTIISGFAENGDSVACLRFFC 535
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + D VT++ ++++ S + G+S ++ + A+I MY
Sbjct: 536 QMRLADMQFDLVTLIALISSLSAIEDITVGESVHSLAIRSGCNLDVSVANALITMYTN 593
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ G+SQ+G EAL F ++++ + +VT VL A + + A ++ ++ S+
Sbjct: 417 IVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKST 476
Query: 61 YSL-----SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S YA G IR + RD +S A+ISGY+ G+ +ALE F
Sbjct: 477 FNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFD 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ V ++++T V +L+ G ++ G S
Sbjct: 537 RMNKSNVESNDITFVALLSVCCSTGLVNHGLS 568
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YA G I+ AR D + MIS Y+Q+ + +A E F +L V +E ++
Sbjct: 289 YAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSL 348
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL A + LDFGK S++F+ A+++ YAK
Sbjct: 349 SSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAK 392
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
MI GY ++G +NEALE F ++ +G +EVTMV VL A + G K L +
Sbjct: 957 MIDGYVKSGEYNEALEIFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRYILDV 1016
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALE 103
L L+ +S YA G I A D + AMI G + G E+L
Sbjct: 1017 HLPLTVILQTSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLL 1076
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ + DE+T + +LAA S G
Sbjct: 1077 LFHKMRESEIDPDEITFLCLLAACSHGG 1104
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 56/105 (53%), Gaps = 22/105 (20%)
Query: 70 YAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
YA SG + RL RD V+ +MI GY ++G +NEALE F ++ +G +EVT
Sbjct: 930 YAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALEIFDQMMRMGSSKANEVT 989
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
MV VL A + G L+ GK + L T++I+MYAK
Sbjct: 990 MVSVLCACAHLGELNRGKVVHRYILDVHLPLTVILQTSLIDMYAK 1034
>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAW-----ILAKELQI 54
+I+GY Q G NEA+E +G ++ G+ + T V VL A S GA + A ++I
Sbjct: 343 LITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKI 402
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
L++ Y + YA G++ A R A+ISG G EAL F
Sbjct: 403 GLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLF 462
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+ D VT V +LAA S G +D G+S
Sbjct: 463 SRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRS 495
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 81/180 (45%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG Q G+ AL+ F + GV D +T+V + +A + G AK L +
Sbjct: 241 IISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRG 300
Query: 61 YSL------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ + ++ YA I A+ D VS +I+GY Q G NEA+E +
Sbjct: 301 WDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERY 360
Query: 106 GKLESL-GVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
G ++ G+ + T V VL A S GAL G ++++ T +I++YAK
Sbjct: 361 GHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAK 420
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 27/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
M+SG + R EA+ FG++ GV D VT+ VL G +LA + +
Sbjct: 140 MLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHG 199
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++ Y G + A RD V+ ++ISG Q G+ AL+ F
Sbjct: 200 LDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQ 259
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAKM 153
+ GV D +T+V + +A + G KS +I AI++MYAK+
Sbjct: 260 GMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKL 319
>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 577
Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MIS Y Q G F A+ F +++S V EVTMV +L+A + GA +I K
Sbjct: 176 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR 235
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR--------LARDPVSC-KAMISGYSQAGRFNEAL 102
L+I++ L ++ Y G + L+R + C ++I G GR EA+
Sbjct: 236 LKIDVVLG----NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAI 291
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +E G+ D VT V +L+ S G L G+
Sbjct: 292 AAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 326
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
AR+ V+ MIS Y Q G F A+ F +++S V EVTMV +L+A + GALD G
Sbjct: 167 ARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEW 226
Query: 137 ----------KSNIFLTTAIIEMYAK 152
K ++ L A+I+MY K
Sbjct: 227 IHGYIRTKRLKIDVVLGNALIDMYCK 252
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
MISGY Q + EAL+ F +++S + DEVT+V VL A + GA W+ +
Sbjct: 253 MISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 312
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+LD ++ ++ YA G I +R + S A+I+ ++ GR EAL F
Sbjct: 313 KLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLF 372
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI-----FLTTAIIEMYAKM 153
++ G +E+TM+ VL+A + G ++ GK F T IE Y M
Sbjct: 373 MEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCM 425
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 82/177 (46%), Gaps = 31/177 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+I GY ++G + A GKL + D ++ A G A++L E+ + S
Sbjct: 160 LIGGYVRSGDMDNA----GKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERS 215
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S + Y+ +G + AR + S AMISGY Q + EAL+ F +++S
Sbjct: 216 VVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQS 275
Query: 111 -LGVHTDEVTMVVVLAASSGPGALDFG--------------KSNIFLTTAIIEMYAK 152
+ DEVT+V VL A + GALD G +N+ TA+I+MYAK
Sbjct: 276 TTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNV--GTALIDMYAK 330
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G+S G FNE+ F +L + +EV++ VL+A S GA+ K L ++ S
Sbjct: 407 MIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSG 466
Query: 61 YSL-----SSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
YS ++ Y+ G + +A R VS +MI+G + G EA+ F
Sbjct: 467 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIF 526
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV DE++ + +L A S G + G+
Sbjct: 527 NEMTESGVMPDEISFISLLYACSHAGLIKEGE 558
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS MI G+S G FNE+ F +L + +EV++ VL+A S GA +FGK+
Sbjct: 399 RDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTL 458
Query: 139 -----------NIFLTTAIIEMYAK 152
+ + A+I+MY++
Sbjct: 459 HGFVEKSGYSWIVSVNNALIDMYSR 483
>gi|242078691|ref|XP_002444114.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
gi|241940464|gb|EES13609.1| hypothetical protein SORBIDRAFT_07g008510 [Sorghum bicolor]
Length = 718
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
+ ++ + YA +GR+ AR + VS AM++GY QAG EAL+ F ++++
Sbjct: 145 TFNTLITAYARAGRVADARALFDEMPVRNAVSWSAMVNGYVQAGDAREALQIFAQMQAED 204
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
V D+ +V VLAA + GAL+ GK +F TA+++MY+K
Sbjct: 205 VRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIRITVFFGTALVDMYSK 256
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY QAG EAL+ F ++++ V D+ +V VL A + GA W+
Sbjct: 180 MVNGYVQAGDAREALQIFAQMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + ++ Y+ G ++LA ++ ++ MI + GR +EAL F
Sbjct: 240 IRITVFFGTALVDMYSKCGEVQLAMEVFERMEDKNVLAWTTMIKSLAMHGRGSEALMLFT 299
Query: 107 KLESLGV 113
++ S G+
Sbjct: 300 QMVSSGL 306
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI+GY+Q+ F EA+E F +++ G D T+ VL+A GA WI +
Sbjct: 115 MIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNS 174
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
IE+DL++ ++ Y+ G I+ A D S A+ISG + G ++AL
Sbjct: 175 IEMDLNAR--NALIGMYSKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHL 232
Query: 105 FGKLESLG-VHTDEVTMVVVLAASSGPGALDFG------KSNIFLTTAIIEMYAKM 153
F ++E + + +E+T + VL A + G +D G + I+ T IE Y M
Sbjct: 233 FSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCM 288
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 24 LGVHTDEVTMVVVLTASSGPGAWILAK---ELQIELDLSSYSLSSKTSRYAHSGRIRLA- 79
LGVH D +++A S GA A+ ++ L S +S S Y S R LA
Sbjct: 39 LGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELAL 98
Query: 80 --------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
R+ V +MI+GY+Q+ F EA+E F +++ G D T+ VL+A G
Sbjct: 99 KVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWG 158
Query: 132 ALDFGKS-NIFLTTAIIEM 149
AL G+ +++ IEM
Sbjct: 159 ALAQGRWIHLYCERNSIEM 177
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
MI GY + G +N+ALE F ++ +G +EVTMV V+ A + GA K L +
Sbjct: 957 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDV 1016
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALE 103
L L+ +S YA G I A D + A+I G + G E+L+
Sbjct: 1017 HLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQ 1076
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ + DE+T + +LAA S G
Sbjct: 1077 LFHKMRESKIDPDEITFLCLLAACSHGG 1104
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 57/105 (54%), Gaps = 22/105 (20%)
Query: 70 YAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVT 119
YA SG + RL RD V+ +MI GY + G +N+ALE F ++ +G +EVT
Sbjct: 930 YAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVT 989
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
MV V+ A + GAL+ GK+ + L T++I+MYAK
Sbjct: 990 MVSVICACAHLGALNRGKTVHRYILDVHLPLTVILQTSLIDMYAK 1034
>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Brachypodium distachyon]
Length = 874
Score = 59.3 bits (142), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI------LAKELQI 54
M+S YSQAG + A F K+ G+ +E T+ + A + P A I A ++
Sbjct: 472 MLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKY 531
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ S+ + YA G I AR D VS +MISGY+Q G EAL+ F
Sbjct: 532 RYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTF 591
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E++G+ D T + V+ + G + G+
Sbjct: 592 RQMETVGIEMDGATFLAVIVGCTHAGLVKEGQ 623
Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI G Q A F ++ V +E T VLTAS IL ++ ++
Sbjct: 375 MIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIP----ILLPQIHAQIIKTN 430
Query: 58 -----------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+SYS T ++ +D V+ AM+S YSQAG + A F
Sbjct: 431 YQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFI 490
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGA-LDFGK------------SNIFLTTAIIEMYAK 152
K+ G+ +E T+ + A + P A +D G+ I + +A++ MYA+
Sbjct: 491 KMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYAR 549
Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ V+ ++++GY Q ++ + F ++ + GV + T VL+A + GA+D G
Sbjct: 164 RNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRV 223
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+S +F+ ++I MY+K
Sbjct: 224 HAQSVKFGCRSTVFVCNSLINMYSK 248
>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
Length = 810
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M++ Y+ EA+E F +++ G+ D VT+ VL + A L K + +
Sbjct: 263 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 322
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
SS L + YA+ G ++ ARD VS ++IS Y + G EA++ F
Sbjct: 323 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 382
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
K+ G+ D + V +LAA S G LD GK + T+ + K+
Sbjct: 383 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKL 429
Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG++ AG F A++ F +L +L + + + S G ++E D++
Sbjct: 194 MISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKA--------RVE-DIAL 244
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R+ + +S AM++ Y+ EA+E F +++ G+ D VT+
Sbjct: 245 LKGVFDEMRF---------KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 295
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL + AL GK S++ L A+++MYA
Sbjct: 296 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYAN 339
Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKEL-----Q 53
++ G + A +AL F + G D T + L + + +L +++ +
Sbjct: 91 LLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTAR 150
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ LD + + S S YA GR A RD VS AMISG++ AG F A++
Sbjct: 151 LGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDV 210
Query: 105 FGKLESLGV-HTDEVTMVVVL 124
F +L +L D TM +L
Sbjct: 211 FRELVALQCPKPDAGTMASIL 231
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MI+G+ Q G ++ALE F K+ES V VTMV VL+A + ++I
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262
Query: 52 LQIELDLSSYSLSSKTSR---------------------------YAHSGRIRLAR---- 80
+ + L L++ L T YA S AR
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
D V+ A+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GAL+
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALE 382
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G + N +T+A+I MY+K
Sbjct: 383 LGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D VS +MI+G+ Q G ++ALE F K+ES V VTMV VL+A + L+FG+
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ L A+++MY K
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTK 279
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GA WI + +
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ + S+ Y+ G + +R D AMI G + G NEA++ F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ V + VT V A S G +D +S
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
Length = 568
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MISGY Q G EAL+ ++ GV D +T+ VL + G +++
Sbjct: 66 MISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHG 125
Query: 52 LQIELDLSS--YSLSSKTSRYAHSGRI--RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
L+ EL +S+ ++ +K H+ ++ L +D VS +I+GY+Q G +EA+E +
Sbjct: 126 LEFELFVSNALINMYAKFGSLGHAQKVFGLLIKDVVSWNTLITGYAQNGLASEAIEVYLL 185
Query: 108 LESL-GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+E + ++ T V +L A S GAL G S++F+ T +I+MY K
Sbjct: 186 MEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGK 243
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 56/125 (44%), Gaps = 19/125 (15%)
Query: 48 LAKELQIELDL-SSYSLSSKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNE 100
L +L E D+ + SL SR+ G R ARD S AMISGY Q G E
Sbjct: 19 LVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQNGNAAE 78
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
AL+ ++ GV D +T+ VL + G + GK +F++ A+I
Sbjct: 79 ALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALIN 138
Query: 149 MYAKM 153
MYAK
Sbjct: 139 MYAKF 143
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 19/148 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
+I+GY+Q G +EA+E + +E + ++ T V +L A S GA L + ++I +
Sbjct: 166 LITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGA--LQQGMRIHGQVI 223
Query: 60 SYSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
L S Y G++ A ++ V AMIS Y G +ALE
Sbjct: 224 KNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALE 283
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPG 131
F ++++ V D +T V +L+A S G
Sbjct: 284 LFREMKAERVKPDHITFVSLLSACSHSG 311
>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 849
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY A++ F L +LG+ + V + L A + A + +EL +
Sbjct: 421 MISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNA 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ Y+ GR+ L A+D V+ +MIS ++Q G EAL+ F
Sbjct: 481 YEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFR 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV + VT+ +L+A +G A+ +GK +++F +A+I+MY K
Sbjct: 541 QMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGK 598
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISG Q G ++AL F ++ G+ D VT+ +L A + + KE+ +
Sbjct: 320 MISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNC 379
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + +S+ Y +R+A+ D V MISGY A++ F
Sbjct: 380 AHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFR 439
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
L +LG+ + V + L A + A+ G+ ++ +A+++MY+K
Sbjct: 440 YLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSK 497
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
M+ GY +AG A+ F + + G + T+ L+ SG LA +
Sbjct: 219 MMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG 278
Query: 54 IELDLSS----YSLSSKTSRYAHSGRI--RLARDP-VSCKAMISGYSQAGRFNEALEPFG 106
+E +++ S+ +K + R+ + RD V+ MISG Q G ++AL F
Sbjct: 279 LEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFC 338
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ D VT+ +L A + GK ++FL +A++++Y K
Sbjct: 339 DMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFK 396
>gi|224065397|ref|XP_002301797.1| predicted protein [Populus trichocarpa]
gi|222843523|gb|EEE81070.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G Q G EA++ F ++ G+ D V M+ ++ A + G EL++ L +
Sbjct: 178 MITGLVQNGNVLEAVDMFRRMRKEGIEGDGVLMLGLVQACANLG------ELKLGLSVHG 231
Query: 61 YSL------------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFN 99
+++ +S YA G + LA ++ VS A+ISG++Q G
Sbjct: 232 HAVRREMLMDDVILQTSLVDMYAKIGDLELASRVFEQMPRKNAVSWGALISGFAQNGFAE 291
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIE 148
AL+ +++SL D +V L A S G L GKS + L TA+I+
Sbjct: 292 YALDLLVEMQSLEFKPDTAVLVSALLACSQVGHLKLGKSIHGYIVRRLGFELVLGTALID 351
Query: 149 MYAK 152
MYAK
Sbjct: 352 MYAK 355
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 31/182 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MI YS+ E L + ++ + G D T V + ASS G W A +
Sbjct: 77 MIVAYSRRYHLTEVLNLYHQMVNEGGKPDSSTFTVAIKASSSLKDLEAGERIWRRAVDFG 136
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
D+ + SS + Y G+I A RD V MI+G Q G EA++
Sbjct: 137 YGCDV--FVGSSVLNLYVKCGKIDEAKLVFDKMVKRDVVCWATMITGLVQNGNVLEAVDM 194
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYA 151
F ++ G+ D V M+ ++ A + G L G S ++ L T++++MYA
Sbjct: 195 FRRMRKEGIEGDGVLMLGLVQACANLGELKLGLSVHGHAVRREMLMDDVILQTSLVDMYA 254
Query: 152 KM 153
K+
Sbjct: 255 KI 256
>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
Length = 837
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY++ +A F ++ G+ D +T + ++ A + LA+E+ ++ +
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAG 394
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I+ AR D VS AMI Y + G EA E F
Sbjct: 395 FGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFH 454
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V D VT + +L A GALD G
Sbjct: 455 LMKRNNVEPDVVTYINLLNACGHLGALDLG 484
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I+GY+Q G EA F ++ + +T ++VL A S P L KE ++
Sbjct: 133 IIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVG 192
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S + + + S Y G + A RD + MI GY+++G +A + F
Sbjct: 193 FVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFY 252
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
+++ G + ++ + +L S P AL +GK+ ++ + TA+I MY
Sbjct: 253 RMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMY 308
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
MI Y + G EA E F ++ V D VT + +L A GA L E+ I+ D
Sbjct: 436 MIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD 495
Query: 58 LSSY-----SLSSKTSRYAHSGRIR------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L S+ +L + ++ R R + RD V+ MI GYS G EAL+ F
Sbjct: 496 LVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFD 555
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + VT V VL+A S G ++ G+
Sbjct: 556 RMLKERFRPNSVTFVGVLSACSRAGFVEEGR 586
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI GY+++G +A + F +++ G + ++ + +L S P A K + +
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293
Query: 58 -LSSYSLSSKTSR-YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +++ R Y G I AR D VS MI GY++ +A F
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D +T + ++ A + L + +++ + TA++ MYAK
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAK 411
Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 29/167 (17%)
Query: 12 NEALEPFGKLESLGVHTDEVTMV-----VVLTASSGPGAWILAKELQIELDLSSYSLSSK 66
N+ L G+ + H D T V ++ +G G + +Q L+ Y L++
Sbjct: 46 NDVLHRLGEGSN---HIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTL 102
Query: 67 TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
++ G + AR V+ A+I+GY+Q G EA F ++ +
Sbjct: 103 IKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSI 162
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+T ++VL A S P L GK S+ + TA++ MY K
Sbjct: 163 ITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVK 209
>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
Length = 669
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M++ Y+ EA+E F +++ G+ D VT+ VL + A L K + +
Sbjct: 153 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 212
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
SS L + YA+ G ++ ARD VS ++IS Y + G EA++ F
Sbjct: 213 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 272
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
K+ G+ D + V +LAA S G LD GK + T+ + K+
Sbjct: 273 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKL 319
Score = 42.4 bits (98), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 30/164 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG++ AG F A++ F +L +L + + + S G ++E D++
Sbjct: 84 MISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKA--------RVE-DIAL 134
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R+ + +S AM++ Y+ EA+E F +++ G+ D VT+
Sbjct: 135 LKGVFDEMRF---------KGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 185
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL + AL GK S++ L A+++MYA
Sbjct: 186 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYAN 229
Score = 36.6 bits (83), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQ 94
G I + ++ LD + + S S YA GR A RD VS AMISG++
Sbjct: 31 GRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAH 90
Query: 95 AGRFNEALEPFGKLESLGV-HTDEVTMVVVL 124
AG F A++ F +L +L D TM +L
Sbjct: 91 AGLFGRAMDVFRELVALQCPKPDAGTMASIL 121
>gi|224094065|ref|XP_002310070.1| predicted protein [Populus trichocarpa]
gi|222852973|gb|EEE90520.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S YA G + LAR D S +I GY+++G + +A+ F K+ + G
Sbjct: 78 SWNSMVDGYAKCGYLDLARGLFDLMPERDVRSWSCLIDGYAKSGNYGDAMAVFEKMRTSG 137
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+EVTMV VL A + GALD G+ N+ L T++I+MYAK
Sbjct: 138 PKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNGFELNLVLRTSLIDMYAK 189
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 16/147 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+++G + +A+ F K+ + G +EVTMV VL A + GA + + L +
Sbjct: 113 LIDGYAKSGNYGDAMAVFEKMRTSGPKANEVTMVSVLCACAHLGALDKGRMMHQYLVDNG 172
Query: 61 YSL-----SSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L +S YA G + A D + AMI G + G E+L+
Sbjct: 173 FELNLVLRTSLIDMYAKCGAVEEAFAVFRGVSLRKSDVLIWNAMIGGLATHGLVKESLDL 232
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPG 131
+ +++ G+ DE+T + +L+A + G
Sbjct: 233 YTEMQIAGIKPDEITFLCLLSACAHGG 259
>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
Length = 614
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
M++ Y+ EA+E F +++ G+ D VT+ VL + A L K + +
Sbjct: 98 MLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRR 157
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
SS L + YA+ G ++ ARD VS ++IS Y + G EA++ F
Sbjct: 158 MCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFE 217
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
K+ G+ D + V +LAA S G LD GK + T+ + K+
Sbjct: 218 KMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKL 264
Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 30/164 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG++ AG F A++ F +L +L + + + S G A+ I L
Sbjct: 29 MISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGK-----ARVEDIAL---- 79
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
L +G I S AM++ Y+ EA+E F +++ G+ D VT+
Sbjct: 80 --LKGVFDEMRFTGLI-------SWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 130
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VL + AL GK S++ L A+++MYA
Sbjct: 131 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYAN 174
>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----EL 56
ISGY+Q G EAL ++ S G+ +EVT++ VL+ + GA + KE+ +
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI 396
Query: 57 DL-------SSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRF 98
DL + ++ YA ++ A RD V+ MI GYSQ G
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 99 NEALEPFGKL--ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLT 143
N+ALE ++ E + T+ L A + AL GK +F++
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS 516
Query: 144 TAIIEMYAK 152
+I+MYAK
Sbjct: 517 NCLIDMYAK 525
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQI----- 54
+I Y++ G+ ALE F ++ + G D +T+V VL + G L K+L
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
E+ + + + YA G + A +D VS AM++GYSQ GRF +A+ F
Sbjct: 259 EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLF 318
Query: 106 GKLESLGVHTDEVTMVVVLA--ASSGPGALDFGKSNIFLTTAI 146
K++ + D VT ++ A G G G L++ I
Sbjct: 319 EKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
MI GYSQ G N+ALE ++ E + T+ L A + A + K++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH----- 500
Query: 59 SSYSLSSKTS------------RYAHSGRIR---------LARDPVSCKAMISGYSQAGR 97
+Y+L ++ + YA G I +A++ V+ ++++GY G
Sbjct: 501 -AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGY 559
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL F ++ +G D VT++VVL A S G +D G
Sbjct: 560 GEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 52/137 (37%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GYSQ GRF +A+ F K++ E +I++D+ +
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQ----------------------------EEKIKMDVVT 332
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S A ISGY+Q G EAL ++ S G+ +EVT+
Sbjct: 333 WS------------------------AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368
Query: 121 VVVLAASSGPGALDFGK 137
+ VL+ + GAL GK
Sbjct: 369 ISVLSGCASVGALMHGK 385
>gi|242034867|ref|XP_002464828.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
gi|241918682|gb|EER91826.1| hypothetical protein SORBIDRAFT_01g027350 [Sorghum bicolor]
Length = 447
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDL 58
MISGY+Q+G EA+ F K++ V + +T+V +L+A + L KEL QI +
Sbjct: 184 MISGYAQSGCGEEAVLLFRKMKMRRVFVNHLTVVGLLSACGSMQSIYLGKELHAQIIKNC 243
Query: 59 SSYSLS---------SKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+L S+ + ++ RI A RD V+ AMISGY+ G EAL+
Sbjct: 244 MEQNLQIGSTLVWFYSRCGEHTYAARILEAMPDRDAVAWTAMISGYNNLGHNVEALKSLD 303
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV + T L A + AL G+ SN+F+ ++I+MY +
Sbjct: 304 EMLWDGVAPNTYTYSSALKACARLEALRDGRRIHGVVNKTQAFSNVFVGCSLIDMYMR 361
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IELDL 58
MI+ Y Q G ++AL+ F K+ S G +E T+ L A + A K+L I L
Sbjct: 83 MITAYVQHGHGDKALQMFPKMVSEGFRPNEFTVCSALKACAEEKALRFGKQLHGAIVKRL 142
Query: 59 SSYSL---SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y + S+ + YA G + A R+ ++ +MISGY+Q+G EA+ F
Sbjct: 143 YKYDIHVGSALVTMYARCGEVFDAQAVFDKMPRRNTITWTSMISGYAQSGCGEEAVLLFR 202
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ V + +T+V +L+A ++ GK
Sbjct: 203 KMKMRRVFVNHLTVVGLLSACGSMQSIYLGK 233
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G + GR +EA++ F + GV D VT+V ++A + G G W+ +
Sbjct: 174 LIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKR 233
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ AR VS +MI G++ G++ +A+E F
Sbjct: 234 LEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFE 293
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G D VT VL A S G D G
Sbjct: 294 AMRREGFKPDTVTFTGVLTACSHAGLTDEG 323
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
A D VS A+I G + GR +EA++ F + GV D VT+V ++A + GAL G
Sbjct: 165 APDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMW 224
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N+ + ++I+MYA+
Sbjct: 225 VHRFVVDKRLEHNVRVANSLIDMYAR 250
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY+ G +A+ F ++E G+ D+ T++ +L + + G L K + ++
Sbjct: 111 IVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIR 170
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S S YA G++ A +D VS M+ G + G +AL+ F
Sbjct: 171 YKCSVNVSNALVDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFS 230
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G D+VT+V VL A G +D G
Sbjct: 231 IMRQEGFRPDKVTLVAVLCACVHAGFVDEG 260
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 38/180 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
MI G + G +EA + F DE+ M ++ ++ ++ A E+ L
Sbjct: 18 MIRGLLKVGELSEACKLF----------DEMPMKDAVSWNTILDGYVKAGEMNKAFGLFE 67
Query: 59 -----SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S S+ S Y +G + +AR + VS ++SGY+ G +A+
Sbjct: 68 SMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIRS 127
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
F ++E G+ D+ T++ +LA+ + G L G K ++ ++ A+++MYAK
Sbjct: 128 FEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAK 187
>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g25360-like [Brachypodium distachyon]
Length = 804
Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY G +AL+ F ++ S V + T + A GA K+L L
Sbjct: 403 MVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCG 462
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ + YA G ++ AR D VS AMIS Q G EALE F
Sbjct: 463 FEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFD 522
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + G++ D ++ + +L A + G +D G
Sbjct: 523 QMVAQGIYPDRISFLTILTACNHAGLVDDG 552
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MISGY Q+G EA E F ++ S + DE T +L+A + G ++ K ++++
Sbjct: 267 MISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQ 326
Query: 56 LDLSSYSL----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
D + ++ + Y+ SG+I +A +D VS ++SGY ++G + A
Sbjct: 327 PDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAA 386
Query: 103 EPFGKL 108
F ++
Sbjct: 387 RIFKEM 392
Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
V AMISGY Q+G EA E F ++ S + DE T +L+A + G GKS
Sbjct: 262 VVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKS 317
>gi|302818065|ref|XP_002990707.1| hypothetical protein SELMODRAFT_132169 [Selaginella moellendorffii]
gi|300141629|gb|EFJ08339.1| hypothetical protein SELMODRAFT_132169 [Selaginella moellendorffii]
Length = 446
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI Y+Q G EAL F +++ V V+ L A + GA +E+ +E +
Sbjct: 36 MIVAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAN 92
Query: 58 LSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L+S + +S S YA G + AR D SC AMI+ ++Q GR +AL + K
Sbjct: 93 LASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRK 152
Query: 108 LESLGVHTDEVTMVVVLAASS 128
+E G+ D +T V VL A S
Sbjct: 153 MEQEGIPADGITFVSVLVACS 173
>gi|297791795|ref|XP_002863782.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309617|gb|EFH40041.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 590
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
M++G++Q G+ +A+E + ++++ G D V M+ +L AS G + + ++
Sbjct: 180 MVTGFAQGGKSMKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTG 239
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L +++ +S YA G I +A + V+ ++ISG++Q G N A E
Sbjct: 240 LPMNTVVETSLVDMYAKVGFIEVAFRMFSRMMFKTAVTWGSLISGFAQNGLANYAFEAVL 299
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++SLG D T+V VL A S G+L G S + TA+++MY+K
Sbjct: 300 EMQSLGFQLDLATLVGVLVACSQVGSLTTGISVHCYILKRHVLDRITATALMDMYSK 356
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 30/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
MI YS+ NE L+ + ++ S V D T + + A G W A E
Sbjct: 79 MIVVYSRGNNPNEVLKLYDQMISERVKPDSSTFTITIKACLSGMALEKGEAVWSKAVEFG 138
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ D+ + SS + Y G++ A RD + M++G++Q G+ +A+E
Sbjct: 139 YKNDV--FVCSSVLNLYMKCGKMNEAEVLFRKMTKRDVICWTTMVTGFAQGGKSMKAVEF 196
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ ++++ G D V M+ +L AS G G+S N + T++++MYAK
Sbjct: 197 YREMQNEGFGRDRVVMLGLLQASGDLGDPKMGRSVHGYLIRTGLPMNTVVETSLVDMYAK 256
Query: 153 M 153
+
Sbjct: 257 V 257
>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+ YSQ G EAL+ + +++ + D +L A + A+ K+L +
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFG 516
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ +S + YA G I A R VS AMI GY+Q G EAL F
Sbjct: 517 FMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFN 576
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV + +T+V VL A + G ++ GK
Sbjct: 577 QMLRDGVPPNHITLVSVLCACNHAGLVNEGK 607
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+ISGYSQ G +A+ F K+ S + ++ T+ VL + + A + K++ I+
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSG 415
Query: 58 LSS--YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S Y ++S Y I R D V+ +MI+ YSQ G EAL+ +
Sbjct: 416 IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYL 475
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ + D +L A + A + GK +IF + +++ MYAK
Sbjct: 476 QMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAK 533
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
++SGY Q G EAL F ++ LGV +E T VL A S + +++
Sbjct: 53 LLSGYVQNGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTG 112
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G + + R+ VS A+ S Y Q+ EA+ F
Sbjct: 113 FESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFK 172
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G+ +E ++ ++L A +G D G+ + F A+++MY+K
Sbjct: 173 EMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSK 230
Score = 43.9 bits (102), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 62 SLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
+L SK R+ ++ ++ D VS +++SGY Q G EAL F ++ LGV +E
Sbjct: 24 TLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVKCNEF 83
Query: 119 TMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
T VL A S L+ G+ S+ F+ ++ MYAK
Sbjct: 84 TFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAK 129
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G +Q G +AL + ++ G+ D T+ +L AS+ + KE L+
Sbjct: 308 LIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHG 367
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ S+ S S Y H G AR VS AMISGYSQ G +AL F
Sbjct: 368 LEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFR 427
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
KL S G ++ +V VL A S AL GK ++F+ + I+MYAK
Sbjct: 428 KLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAK 485
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I +Q + NEA E + K+ G+ + VT V +L + + P A L + +I +S
Sbjct: 251 IIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA--LNRGRRIHSHISE 308
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAG-----RFN 99
L + + Y I+ AR D +S AMI+GY+Q+G +
Sbjct: 309 RGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLD 368
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
E + ++ GV ++VT + +L A S GAL+ G+ S+ L TAI
Sbjct: 369 EVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIF 428
Query: 148 EMYAK 152
MYAK
Sbjct: 429 NMYAK 433
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+GY+Q+G + E ++ G D VT++ +L A G + A+ +++
Sbjct: 489 MIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLG 548
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S Y+ G + AR D V+ AM++GY Q G EA++ F
Sbjct: 549 LESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFK 608
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V +E+T V++A G + G+
Sbjct: 609 RMLKERVPPNEITFTAVISACGRAGLVQEGR 639
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 83/216 (38%), Gaps = 66/216 (30%)
Query: 1 MISGYSQAG-----RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE 55
MI+GY+Q+G +E + ++ GV ++VT + +L A S GA L + QI
Sbjct: 352 MIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGA--LEQGRQIH 409
Query: 56 LDLSSYSLSSKTS-------RYAHSGRIRLA----------------------------- 79
++S S S YA G I A
Sbjct: 410 AEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLT 469
Query: 80 -----------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128
R+ VS MI+GY+Q+G + E ++ G D VT++ +L A
Sbjct: 470 SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACG 529
Query: 129 GPGALDFGK------------SNIFLTTAIIEMYAK 152
AL+ GK S+ + T++I MY+K
Sbjct: 530 ALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSK 565
>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
Length = 880
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG--------AWILAKEL 52
M+S + +AG +++AL+ + ++ GV +E T V +L ASS G A ++ +
Sbjct: 188 MVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRI 247
Query: 53 QIELDLSS-----YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
++ L L + Y ++ L D A+ISG++Q+ +F EA+ F +
Sbjct: 248 ELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHE 307
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+E+ GV + T +L A S ALD GK +++ + ++++MY K
Sbjct: 308 METSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMK 364
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y + G EALE F + G + +E T+ L + S + Q + S
Sbjct: 87 LMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG 146
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ Y+ G + A D VS M+S + +AG +++AL+ +
Sbjct: 147 FDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYH 206
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV +E T V +LAASS G L++GK N+ L TA+++MY K
Sbjct: 207 RMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMWRIELNLVLKTALVDMYCK 263
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 71/143 (49%), Gaps = 17/143 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISG++Q+ +F EA+ F ++E+ GV + T +L A S A L K++
Sbjct: 288 IISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAG 347
Query: 54 IELDLSS----YSLSSKTSRYAHSGRIRLAR-----DPVSCKAMISGYSQAGRFNEALEP 104
+E D+S + K S +R R + +S ++I+G+S+ G E+++
Sbjct: 348 LENDVSVGNSLVDMYMKCSNMIEDA-VRAFRGIASPNVISWTSLIAGFSEHGLEEESIKV 406
Query: 105 FGKLESLGVHTDEVTMVVVLAAS 127
FG ++ +GV + T+ +L A
Sbjct: 407 FGAMQGVGVRPNSFTLSTILGAC 429
Score = 37.7 bits (86), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 6/100 (6%)
Query: 38 TASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR-DPVSCKAMISGYSQAG 96
+ SG G+WI ++L + AH + + D VS +I G + G
Sbjct: 546 SVKSGLGSWISVSNGLVDLYGKCGCIHD-----AHRSFLEITEPDAVSWNGLIFGLASNG 600
Query: 97 RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ AL F + GV D++T ++VL A S G +D G
Sbjct: 601 HVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMG 640
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 72/155 (46%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MIS Y Q G F A+ F +++S V EVTMV +L+A + GA +I K
Sbjct: 104 MISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKR 163
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIR--------LARDPVSC-KAMISGYSQAGRFNEAL 102
L+I++ L ++ Y G + L+R + C ++I G GR EA+
Sbjct: 164 LKIDVVLG----NALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAI 219
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F +E G+ D VT V +L+ S G L G+
Sbjct: 220 AAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQ 254
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 23/106 (21%)
Query: 70 YAHSGRIRLARD-----------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
YA G + AR+ V+ MIS Y Q G F A+ F +++S V EV
Sbjct: 75 YAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEV 134
Query: 119 TMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
TMV +L+A + GALD G K ++ L A+I+MY K
Sbjct: 135 TMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCK 180
>gi|224056823|ref|XP_002299041.1| predicted protein [Populus trichocarpa]
gi|222846299|gb|EEE83846.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y +A NEAL+ F K++S GV DE TMV VL A + A+ L ++ +S
Sbjct: 283 MVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQCARLLHRFINRNS 342
Query: 61 ------YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ + Y+ G + A D + AMI G + G NEAL F
Sbjct: 343 NVRQDVFLKTALITMYSKCGSVEEALVTFYKMEYTDVFTWTAMIEGLANNGYGNEALSMF 402
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E+ G+ +E T+V VL A G + G
Sbjct: 403 NRMENQGIRPNESTLVSVLTACIHSGLVKEG 433
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 84/211 (39%), Gaps = 65/211 (30%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--------------------GPG 44
Y+ F E + F KL V D++++V+VL+A + G G
Sbjct: 152 YNTNNSFTEVMVLFKKLMCGCVKADKISLVIVLSACAQAQMEGLEYGRSVHGYVIKVGFG 211
Query: 45 A-----------WILAKELQI----------ELDLSSYSLSSKTSRYAHSGRIRLARD-- 81
+I KE+ E D+ SY++ + Y G I LARD
Sbjct: 212 CFLNVDNALLNFYIKCKEIDDASKMFDEFVHEGDVVSYTI--LINAYVEMGLIDLARDVF 269
Query: 82 -------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
V M+ Y +A NEAL+ F K++S GV DE TMV VL A + L
Sbjct: 270 DEIVDKDRVLWNLMVHAYVKARCPNEALDLFEKMDSAGVIPDENTMVSVLLACASISDLQ 329
Query: 135 FG-------------KSNIFLTTAIIEMYAK 152
+ ++FL TA+I MY+K
Sbjct: 330 CARLLHRFINRNSNVRQDVFLKTALITMYSK 360
>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Brachypodium distachyon]
Length = 796
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGYS G ++E F +L +G+ T+V ++ S G LA L
Sbjct: 293 LISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAG 352
Query: 56 LDLS---SYSLSSKTSRYAHSGRIRLARDPV------SCKAMISGYSQAGRFNEALEPFG 106
LD + S +L++ R+ R A D + S AMISGY+Q G A+ F
Sbjct: 353 LDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQ 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++++L V + +T+ L+A + GAL GK N+++ TA+I+MY K
Sbjct: 413 QMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVK 470
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MISGY+Q G A+ F ++++L V + +T+ L+A + GA L K + +
Sbjct: 394 MISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLGKWVHKIIANEK 453
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+L+ Y +++ Y G I AR + VS MISGY G+ EAL+ +
Sbjct: 454 LELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLYK 513
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ +H T + VL A S G + G +
Sbjct: 514 DMMDAHLHPTSSTFLSVLYACSHGGLVKEGTT 545
Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 12 NEALEPFGKLESLG-VHTDEVTMVVVL-----TASSGPGAWILAKELQIELDLSSYSLSS 65
+EALE F ++ G V D T+ VL A++ G + A + L + ++
Sbjct: 202 SEALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTG 261
Query: 66 KTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD 116
S YA G + AR D V+ A+ISGYS G ++E F +L +G+
Sbjct: 262 LISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPS 321
Query: 117 EVTMVVVLAASS 128
T+V ++ S
Sbjct: 322 SSTLVALIPVHS 333
>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
Length = 604
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--GAWI-LAKELQIELD 57
+IS Y+Q R ++A+ F ++ G+ VT VL A +GP W L +L +E+
Sbjct: 105 VISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVG 164
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ + ++ + Y+ G I AR D VS MI+ Y+Q G EALE F
Sbjct: 165 FGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFH 224
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++++ G+ + +T V V+ A + + SN L TA++ MY K
Sbjct: 225 RMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGK 282
Score = 36.6 bits (83), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS A+IS Y+Q R ++A+ F ++ G+ VT VL A +GP + K
Sbjct: 97 RNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLV 156
Query: 138 ----------SNIFLTTAIIEMYAKM 153
S+ + TA++ MY+K+
Sbjct: 157 HDLALEVGFGSHPVVATALLNMYSKV 182
>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g30700-like [Glycine max]
Length = 778
Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 87/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+S G A++ F +L G TMV ++ SS G LA +Q S
Sbjct: 276 LISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSG 335
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFG 106
L ++ T+ Y+ I LAR D S K AMISGY+Q+G A+ F
Sbjct: 336 TILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQ 395
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + + VT+ +L+A + GAL FGKS NI+++TA+I+MYAK
Sbjct: 396 EMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAK 453
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MISGY+Q+G A+ F ++ + + VT+ +L+A + GA K +
Sbjct: 377 MISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQLIKSKN 436
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + Y ++ YA G I A ++ V+ MI GY G +EAL+ F
Sbjct: 437 LEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFN 496
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
++ LG VT + VL A S G + G N + + E YA M
Sbjct: 497 EMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACM 549
Score = 42.0 bits (97), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MI+G + ++++++ F + + GV D T+ VL A + G G LA +L
Sbjct: 175 MITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLG 234
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
D Y L+ S ++ + AR D VS A+ISG+S G A++
Sbjct: 235 FHFD--DYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKY 292
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGAL 133
F +L G TMV ++ SS G L
Sbjct: 293 FRELLVSGQRVSSSTMVGLIPVSSPFGHL 321
>gi|326489701|dbj|BAK01831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 484
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I G + GR +EA++ F + GV D VT+V ++A + G G W+ +
Sbjct: 174 LIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVHRLVTRER 233
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S YA G++ AR VS +MI G++ GR +A+E F
Sbjct: 234 LEGNIRIANSLIDMYARCGQVEFARQVFDSMRNRTVVSWNSMIVGFAANGRCTDAIEHFE 293
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G D VT VL A S G D G
Sbjct: 294 AMRRKGFRPDAVTFTGVLTACSHAGLTDEG 323
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D VS A+I G + GR +EA++ F + GV D VT+V ++A + GAL G
Sbjct: 167 DKVSWTALIDGCVKNGRHDEAIDCFHAMLLDGVEPDYVTLVAAISACAEVGALGLGMWVH 226
Query: 137 --------KSNIFLTTAIIEMYAK 152
+ NI + ++I+MYA+
Sbjct: 227 RLVTRERLEGNIRIANSLIDMYAR 250
>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
Length = 604
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--GAWI-LAKELQIELD 57
+IS Y+Q R ++A+ F ++ G+ VT VL A +GP W L +L +E+
Sbjct: 105 VISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVG 164
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ + ++ + Y+ G I AR D VS MI+ Y+Q G EALE F
Sbjct: 165 FGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFH 224
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++++ G+ + +T V V+ A + + SN L TA++ MY K
Sbjct: 225 RMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGK 282
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS A+IS Y+Q R ++A+ F ++ G+ VT VL A +GP + K
Sbjct: 97 RNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLV 156
Query: 138 ----------SNIFLTTAIIEMYAKM 153
S+ + TA++ MY+K+
Sbjct: 157 HDLALEVGFGSHPVVATALLNMYSKV 182
>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI GY Q G F EALE F +++ + + + VL+A + GA WI AK
Sbjct: 274 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 333
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I+LD +S YA GRI LA ++ S AMI G + GR +A++
Sbjct: 334 IQLD--GVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 391
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K++ ++ +E+T V VL A + G + G
Sbjct: 392 FSKMD---IYPNEITFVGVLNACAHGGLVQKG 420
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD----- 134
RD +S AMI GY Q G F EALE F +++ + + + VL+A + GALD
Sbjct: 266 RDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWI 325
Query: 135 --FGKSNIF-----LTTAIIEMYAK 152
+ K N L T++++MYAK
Sbjct: 326 HTYAKRNSIQLDGVLGTSLVDMYAK 350
>gi|255543567|ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 79/181 (43%), Gaps = 32/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLS 59
+I GY Q +F+EA + F + G D VT +L+ + P + KEL Q+ +
Sbjct: 114 LIGGYCQFDQFSEAFKLFSNMIRDGKKPDYVTFATLLSGCNDPE---MTKELFQVHTHVV 170
Query: 60 SYS-------LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
+S Y R+ LA RD V+ A+I+GY + G +A+
Sbjct: 171 KLGHGSAVIICNSLVDSYCKMHRLDLAHRIFKEMVERDSVTYNALITGYGKEGLNEDAIR 230
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
F ++++LG + T VL A G + FG+ N+F+ ++++ Y+
Sbjct: 231 LFTQMQNLGFEPSDFTFQAVLCACIGLDDIIFGQQIHGYAVKMGLVWNVFVGNSLLDFYS 290
Query: 152 K 152
K
Sbjct: 291 K 291
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI+ YS G++ E+++ F +L+ +L+ + + ++L
Sbjct: 316 MITAYSWIGQYRESIDLFRELQFTKFERRNFPFATMLSIAGNTLDLQMGQQLHSHAIVTG 375
Query: 57 -DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
DL +S YA GR A + V A+IS Q G E L+ F
Sbjct: 376 ADLEVLVANSLVDMYAKCGRSEYAERIFVKLSSKSTVPWTALISANVQKGLLEEGLKLFN 435
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D+ T VL AS+ ++ GK SN++ +A+++MYAK
Sbjct: 436 EMRRTNVSADQATFASVLKASANLASISLGKQLHSYLIRSGFWSNVYSGSALVDMYAK 493
>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Cucumis sativus]
Length = 678
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGP----GAWILAKELQIE 55
+ISGYSQ+G+ +EAL F K+ LG +E T+ +L AS +GP G + A L+
Sbjct: 177 LISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYG 236
Query: 56 LDLSSY---SLSSKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
D++ + SL +R+AH ++ A++ VS A+I+G+++ G + F
Sbjct: 237 YDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFL 296
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G T V A + G+L+ GK ++ +I+MYAK
Sbjct: 297 QMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAK 354
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA--SSG---PGAWILAKELQIE 55
+I+G+++ G + F ++ G T V TA SSG G W+ A ++
Sbjct: 278 LIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG 337
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+Y ++ YA SG I+ A+ D VS ++ISGY+Q G EAL+ F
Sbjct: 338 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE 397
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V +E+T + VL A S G LD G+
Sbjct: 398 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQ 428
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS-SGPG------- 131
+D VS +ISGYSQ+G+ +EAL F K+ LG +E T+ +L AS +GP
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228
Query: 132 ---ALDFGKS-NIFLTTAIIEMYAK 152
+L +G N+ + +++++MYA+
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYAR 253
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQI- 54
+I+GY + EAL+ F K+ D VT+ +L A+ + G W+ ++
Sbjct: 179 LINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAG 238
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L Y S+ Y G A RD V +++GY Q+ +F +AL F
Sbjct: 239 RVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAF 298
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ S V ++ T+ VL+A + GALD G+ N+ L TA+++MYAK
Sbjct: 299 WDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAK 357
Score = 43.9 bits (102), Expect = 0.023, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY Q+ +F +AL F + S V ++ T+ VL+A + GA + + ++ +
Sbjct: 281 LVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNK 340
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA G I A ++ + +I+G + G AL F
Sbjct: 341 INMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFC 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G+ +EVT V VLAA S G ++ GK
Sbjct: 401 CMLKSGIQPNEVTFVGVLAACSHGGFVEEGK 431
Score = 43.5 bits (101), Expect = 0.031, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 18 FGKLESLGVHTDEVTMVVVLTASSGPGA----WILAKELQIELDLSSYSLSSKTSRYAHS 73
+ KL GV D+ T ++L S A I A+ ++ DL + ++ +A+S
Sbjct: 96 YAKLRQKGVQPDKHTFPLLLKTFSKSIAQNPFMIYAQIFKLGFDLDLFIGNALIPAFANS 155
Query: 74 GRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124
G + AR D V+ A+I+GY + EAL+ F K+ D VT+ +L
Sbjct: 156 GFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASIL 215
Query: 125 AASSGPGALDFGK 137
A++ G DFG+
Sbjct: 216 RAAALVGDADFGR 228
>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 831
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +ALE F +++ G D+VT + +LTA G + + QI +SS
Sbjct: 323 MISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGR--QIFDCMSS 380
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
SL +S A++SGY+Q+ EA+E F K++ + D T+
Sbjct: 381 PSL-------------------ISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTL 421
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++L++ + G L+ GK ++++ +++I +Y+K
Sbjct: 422 AIILSSCAELGLLEAGKQVHAVSQKLGFYDDVYVASSLINVYSK 465
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
++SGY+Q+ EA+E F K++ + D T+ ++L++ + G ++++L
Sbjct: 389 ILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLEAGKQVHAVSQKLG 448
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
D+ Y SS + Y+ G++ +++ D V +MI+G+S +AL
Sbjct: 449 FYDDV--YVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDALAC 506
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ G E + + ++ + +L G+ N+F+ ++++EMY K
Sbjct: 507 FKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVDNVFVGSSLVEMYCK 566
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-------------------TASS 41
M+ G SQ + E LE F + G+ D V++ +L T +
Sbjct: 210 MMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQ 269
Query: 42 GPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGY 92
G LA + E DL + +S YA +G + A + VS MISGY
Sbjct: 270 GKQIHTLAVKHGFERDL--HLCNSLLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGY 327
Query: 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ALE F +++ G D+VT + +L A G + G+
Sbjct: 328 GNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKSGDVKVGR 372
Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G+S +AL F ++ G E + + ++ + + +++ ++
Sbjct: 490 MIAGFSINSLEQDALACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDG 549
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y SS Y G + AR + V+ MI GY+ G EA+ +
Sbjct: 550 YVDNVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYK 609
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ S G D++T V VL A S +D G
Sbjct: 610 DMISSGEKPDDITFVAVLTACSHSALVDEG 639
>gi|218186297|gb|EEC68724.1| hypothetical protein OsI_37217 [Oryza sativa Indica Group]
Length = 387
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y + GR +A + F ++ + V+ ++ A W+ A + + + +
Sbjct: 22 LVSMYGKFGRLGDARKAFDEMPD----KNAVSWNALVGAHRAAADWMGADRVSQAMPVRN 77
Query: 61 YSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +++ +R G + A RD VS ++ISGY++ G++ +AL F +++
Sbjct: 78 LSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQE 137
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKSNI-------------FLTTAIIEMYAK 152
G+ E+T+V+VL A + G LD G +NI + A+I+MYAK
Sbjct: 138 NGIQPTELTLVLVLGACAKIGKLDLG-TNIHRNLQNKGIVADGLVGNALIDMYAK 191
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 21/154 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY++ G++ +AL F +++ G+ E+T+V+VL A + G L I +L +
Sbjct: 115 LISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGT--NIHRNLQN 172
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ ++ YA G + LA RD AMI G+S G EALE
Sbjct: 173 KGIVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALEL 232
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F +S+ + + VT + VL A S G ++ G+
Sbjct: 233 F---DSMKIEPNPVTFLGVLTACSHGGLVNEGRK 263
>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI GYS + +EALE F ++ +E T ++TA+S G + +++
Sbjct: 425 MIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG 484
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++ YA G I AR D V +MIS ++Q G EAL F
Sbjct: 485 LDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFR 544
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ + VT V VL+A S G ++ G
Sbjct: 545 EMMKEGIQPNYVTFVAVLSACSHAGRVEDG 574
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISGY Q EA++ FG++ LG D VLT+ G + A ++
Sbjct: 324 MISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKAN 383
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + + YA S + A+ + +S AMI GYS + +EALE F
Sbjct: 384 LESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFH 443
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ +E T ++ A+S +L G+ F+T A+++MYAK
Sbjct: 444 EMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAK 501
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQ-- 53
+I+GY++ GR +LE F ++ V D + VL+A S G I A L+
Sbjct: 223 IIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRG 282
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
E+D+S ++ Y R++ R + +S MISGY Q EA++
Sbjct: 283 TEMDVSVVNVL--IDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKL 340
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
FG++ LG D VL + AL+ G+ S+ F+ +I+MYAK
Sbjct: 341 FGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAK 400
Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
M+S YSQ G EAL F L+ G H +E + V+ A + G ++ K Q+
Sbjct: 121 MVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLG--VVEKGAQLHGFVV 178
Query: 56 ---LDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKA------MISGYSQAGRFNEALE 103
D Y +S Y+ +G I RL D +S K +I+GY++ GR +LE
Sbjct: 179 RSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLE 238
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ V D + VL+A S L+ GK
Sbjct: 239 LFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IE--- 55
MI G+ R EA+ F ++ GV +E T+V VL A + GA + + +Q IE
Sbjct: 168 MIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERK 227
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L + ++ YA G I AR D + AMISG + G EA+ F
Sbjct: 228 IGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFD 287
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ES G+ DE TM VL+A G G
Sbjct: 288 QMESFGLRPDERTMTAVLSACRNAGWFSEG 317
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Query: 61 YSLSSKTSR-YAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119
YS K+ R Y G++R RD VS +MI G+ R EA+ F ++ GV +E T
Sbjct: 141 YSSCGKSGRAYKVFGKMR-DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEAT 199
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+V VL A + GA+ G+ + TA+I+MYAK
Sbjct: 200 VVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALIDMYAK 244
>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 997
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 67/149 (44%), Gaps = 22/149 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISG + G AL F ++ +GV DE T+ + ASS G I A L++
Sbjct: 596 LISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 655
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC-------------KAMISGYSQAGRFNEAL 102
+ +S YA G I D C AM+ G +Q G EAL
Sbjct: 656 CTSDPFVGTSLVDMYAKCGSI----DDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEAL 711
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+ F ++ESLG+ D+VT + VL+A S G
Sbjct: 712 QLFKQMESLGIKPDKVTFIGVLSACSHSG 740
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M+SGY+Q+ ++ LE F + G +D+ T+ VL G + A ++
Sbjct: 495 MMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSG 554
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
DL + S Y G + A+ D V+ +ISG + G AL F
Sbjct: 555 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFS 614
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ +GV DE T+ + ASS AL+ G+ S+ F+ T++++MYAK
Sbjct: 615 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAK 672
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIELDLS 59
+I+G +Q+ EA+ F +L G+ D TM VL A+S P L+K++ + +
Sbjct: 394 VIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKT 453
Query: 60 SYSLSSKTS----------RYAHSGRIRLAR---DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S S R + R D V+ AM+SGY+Q+ ++ LE F
Sbjct: 454 NNVADSFVSTALIDAYSRNRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFA 513
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ G +D+ T+ VL A++ GK ++++++ I++MY K
Sbjct: 514 LMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVK 571
Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 30/165 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y + G EA++ + G+H +E+T+ + L+ SG
Sbjct: 224 MLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRL-LSRISGDD---------------- 266
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S + + + + + +S ++SGY AG+++ L+ F + + D+VT
Sbjct: 267 -SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTF 325
Query: 121 VVVLAASSGPGALDFGKS----------NIFLT--TAIIEMYAKM 153
++VLA + +L G+ ++ LT ++I MY K+
Sbjct: 326 ILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKL 370
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
MI GY + G +N+ALE F ++ +G +EVTMV V+ A + GA K L +
Sbjct: 211 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDV 270
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALE 103
L L+ +S YA G I A D + A+I G + G E+L+
Sbjct: 271 HLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQ 330
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ + DE+T + +LAA S G
Sbjct: 331 LFHKMRESKIDPDEITFLCLLAACSHGG 358
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFGKS 138
RD V+ +MI GY + G +N+ALE F ++ +G +EVTMV V+ A + GAL+ GK+
Sbjct: 203 RDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKT 262
Query: 139 ------------NIFLTTAIIEMYAK 152
+ L T++I+MYAK
Sbjct: 263 VHRYILDVHLPLTVILQTSLIDMYAK 288
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G++Q G +AL ++ G D T+ +L A + + KE L+
Sbjct: 422 LIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNG 481
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S S Y H G+ AR + VS AMISGYSQ G E+L F
Sbjct: 482 LETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFR 541
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K S G+ + E+ +V V A S AL GK + F+ +II+MYAK
Sbjct: 542 KSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAK 599
>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Cucumis sativus]
Length = 677
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGP----GAWILAKELQIE 55
+ISGYSQ+G+ +EAL F K+ LG +E T+ +L AS +GP G + A L+
Sbjct: 177 LISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYG 236
Query: 56 LDLSSY---SLSSKTSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
D++ + SL +R+AH ++ A++ VS A+I+G+++ G + F
Sbjct: 237 YDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFX 296
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G T VLA +S G+L+ GK ++ +I+MYAK
Sbjct: 297 QMLRQGFEPTHFTYSSVLACASS-GSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAK 353
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-TASSG---PGAWILAKELQIEL 56
+I+G+++ G + F ++ G T VL ASSG G W+ A ++
Sbjct: 278 LIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGG 337
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+Y ++ YA SG I+ A+ D VS ++ISGY+Q G EAL+ F +
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V +E+T + VL A S G LD G+
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQ 427
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS-SGPG------- 131
+D VS +ISGYSQ+G+ +EAL F K+ LG +E T+ +L AS +GP
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228
Query: 132 ---ALDFGKS-NIFLTTAIIEMYAK 152
+L +G N+ + +++++MYA+
Sbjct: 229 HAFSLKYGYDMNVHVGSSLLDMYAR 253
>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g15510, chloroplastic; Flags: Precursor
gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 866
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G +E LE F + L V D +T+ V++A G L +++ + +
Sbjct: 268 MISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ +S T Y ++G R A +D VS MISGY ++A++ +
Sbjct: 328 FAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYR 387
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V DE+T+ VL+A + G LD G S + + +I MY+K
Sbjct: 388 MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSK 445
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++ GY++ G F+EA+ + ++ +G V D T VL G KE+ + +
Sbjct: 166 LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY 225
Query: 60 SYSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
Y L ++ + Y G ++ AR D +S AMISGY + G +E LE F
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELF 285
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ L V D +T+ V++A G G+
Sbjct: 286 FAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318
>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
Length = 849
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------I 54
+++ Y+Q G LE +++ LGV + VT+ V+ A S G W A+++
Sbjct: 153 LLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSELGNWDEARKIHARAAATC 212
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+L +++ YA G I A +D C AMIS Y Q G +A+ F
Sbjct: 213 QLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTF 272
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGA------------LDFGKSNIFLTTAIIEMYAK 152
+++ G+ ++VT ++ A + G L + ++ + TA++ MY++
Sbjct: 273 NRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSR 331
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G +A+ F +++ G+ ++VT ++ A + G + A+ + LS
Sbjct: 255 MISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSK 314
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ S Y+ G + AR + V+ MI+GY+Q G +EAL+ +
Sbjct: 315 LRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYV 374
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
+E+ GV DE+T V VL + S L G+ S++ + +A+I MY+
Sbjct: 375 SMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYS 431
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G+ +G+ EA F ++ GV D T VL+A + PG LA+ +I +
Sbjct: 302 MIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGG--LARGKEIHARAAK 359
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L S + Y+ +G ++ AR D VS ++ Y+ + E+
Sbjct: 360 DGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTT 419
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ GV +++T + VL A S P AL +GK +++ +T A++ MY K
Sbjct: 420 FKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFK 479
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELD 57
MISGY+ G EA F ++ + D+ T V +L+A S P +E+ + E
Sbjct: 100 MISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAG 159
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L++ + ++ S YA G +R A RD VS + Y+++G E+L+ +
Sbjct: 160 LANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYH 219
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ V +T + VL+A AL+ GK S++ ++TA+ +MY K
Sbjct: 220 AMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMK 277
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ Y+++G E+L+ + + V +T + VL+A A K++ + S
Sbjct: 201 LTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESE 260
Query: 61 YSLSSK-----TSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
Y + T Y G + AR+ C MI G+ +G+ EA F
Sbjct: 261 YHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFH 320
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV D T VL+A + PG L GK S++ A+I MY+K
Sbjct: 321 RMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSK 378
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
YAH G + AR VS MISGY+ G EA F ++ + D+ T
Sbjct: 73 YAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTF 132
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V +L+A S P L++G+ ++ + A+I MYAK
Sbjct: 133 VSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAK 176
>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
Length = 1027
Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q G + +L F ++ V +DE T VL A S A+ KE+ + S
Sbjct: 702 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761
Query: 61 Y-----SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ + S+ Y+ G + + +D + +MI G+++ G +EAL F
Sbjct: 762 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLF 821
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E L + DEVT + VL A + G + G+
Sbjct: 822 QKMEELQIKPDEVTFLGVLIACTHSGLISEGR 853
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++S ++++G + L F + + G D+ + VVL+A S G +LA Q+ D+
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVG--VLAYGRQVHCDVV 185
Query: 60 SYSLSSKT-------SRYAHSGRIRLAR---DPVSC------KAMISGYSQAGRFNEALE 103
SS YA G + AR D ++C +MI+ Y + G + EAL
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ +G D+VT+V +++ + G LD
Sbjct: 246 LFSRMDKMGSAPDQVTLVTIISTLASSGRLD 276
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y + G + EAL F +++ +G D+VT+V +++ + G A L ++ S
Sbjct: 230 MIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPS 289
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
V+ A+ISG++Q+G L + + S G+ T
Sbjct: 290 ---------------------TVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 328
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+A++ A G+ +N+F+ +++I +YAK
Sbjct: 329 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK 372
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISG++Q+G L + + S G+ T +L+A++ A++ +++
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--PVSCK-------AMISGYSQAGRFNEALEPFG 106
LD + + SS + YA G A++ +SC+ AM++G+ Q EA+ F
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + TDE T V +L A + + GK ++F+ A ++MY+K
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK 473
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+ Q +EA++ F ++ G+ VT +L+ SG + K++
Sbjct: 599 LIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSG 658
Query: 54 -------IELDLSSYSLSSKTSRYAHSGRIRLA--RDPVSCKAMISGYSQAGRFNEALEP 104
+ + L+ L SK A+ + ++ A+ISGY+Q G + +L
Sbjct: 659 VLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVS 718
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ V +DE T VL A S A GK S T+A+I+MY+K
Sbjct: 719 FWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSK 778
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M++G+ Q EA+ F + + TDE T V +L A + ++ L K++
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 456
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + ++ Y+ G I A+ D +S A+ G +Q EA+
Sbjct: 457 MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLK 516
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D+V+ + A S A + GK SN + +++I++Y+K
Sbjct: 517 RMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 574
>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
Length = 1027
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q G + +L F ++ V +DE T VL A S A+ KE+ + S
Sbjct: 702 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 761
Query: 61 Y-----SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ + S+ Y+ G + + +D + +MI G+++ G +EAL F
Sbjct: 762 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLF 821
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E L + DEVT + VL A + G + G+
Sbjct: 822 QKMEELQIKPDEVTFLGVLIACTHSGLISEGR 853
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++S ++++G + L F + + G D+ + VVL+A S G +LA Q+ D+
Sbjct: 128 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVG--VLAYGRQVHCDVV 185
Query: 60 SYSLSSKT-------SRYAHSGRIRLAR---DPVSC------KAMISGYSQAGRFNEALE 103
SS YA G + AR D ++C +MI+ Y + G + EAL
Sbjct: 186 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 245
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ +G D+VT+V +++ + G LD
Sbjct: 246 LFSRMDKMGSAPDQVTLVTIISTLASSGRLD 276
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y + G + EAL F +++ +G D+VT+V +++ + G A L ++ S
Sbjct: 230 MIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPS 289
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
V+ A+ISG++Q+G L + + S G+ T
Sbjct: 290 ---------------------TVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 328
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+A++ A G+ +N+F+ +++I +YAK
Sbjct: 329 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK 372
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISG++Q+G L + + S G+ T +L+A++ A++ +++
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--PVSCK-------AMISGYSQAGRFNEALEPFG 106
LD + + SS + YA G A++ +SC+ AM++G+ Q EA+ F
Sbjct: 356 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 415
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + TDE T V +L A + + GK ++F+ A ++MY+K
Sbjct: 416 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK 473
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+ Q +EA++ F ++ G+ VT +L+ SG + K++
Sbjct: 599 LIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSG 658
Query: 54 -------IELDLSSYSLSSKTSRYAHSGRIRLA--RDPVSCKAMISGYSQAGRFNEALEP 104
+ + L+ L SK A+ + ++ A+ISGY+Q G + +L
Sbjct: 659 VLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVS 718
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ V +DE T VL A S A GK S T+A+I+MY+K
Sbjct: 719 FWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSK 778
Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M++G+ Q EA+ F + + TDE T V +L A + ++ L K++
Sbjct: 397 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 456
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + ++ Y+ G I A+ D +S A+ G +Q EA+
Sbjct: 457 MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLK 516
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D+V+ + A S A + GK SN + +++I++Y+K
Sbjct: 517 RMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 574
>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
gi|194706828|gb|ACF87498.1| unknown [Zea mays]
Length = 570
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY+QAG EA FG++ G DE T+ +L A S G + + + +S
Sbjct: 117 MIGGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSG 176
Query: 61 YSLS-----SKTSRYAHSGRIRLAR----------------------------------- 80
+ + Y+ G + +AR
Sbjct: 177 SPVDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFD 236
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ VS MIS Y Q G+++EAL+ + +++S G DE T+V VL+A G L
Sbjct: 237 HMPERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTV 296
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK +I L ++++MYAK
Sbjct: 297 GKMVHLYIRDNIHNPDISLINSLLDMYAK 325
Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 83/173 (47%), Gaps = 21/173 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G+++EAL+ + +++S G DE T+V VL+A G + K + + + +
Sbjct: 249 MISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNI 308
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++S YA G++ A R+ VS +I G + GR +A+ F
Sbjct: 309 HNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFR 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
+ D +T V +L++ S G L+ G+ +++ +E YA M
Sbjct: 369 SMVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACM 420
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-IELDL----S 59
Y + EAL + GV +E T+ V+ A + AW A + + L L
Sbjct: 20 YCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQAWDNALAVHGVALKLGFVGQ 79
Query: 60 SYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ ++ YA +G + R+ VS +MI GY+QAG EA FG++
Sbjct: 80 VFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREACALFGEMRR 139
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G DE T+ +L A S G L+FG+ ++ L A+++MY+K
Sbjct: 140 QGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMYSK 193
>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI+ SQ GR EALE F +++ GV + VT+ +L A A + K L+
Sbjct: 357 MIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GRI+ +R + V A+I+GY+ G+ EA+E F
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ G D ++ VL+A S G + G S+ + A +E YA M
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
VS +MI+ SQ GR EALE F +++ GV + VT+ +L A AL GK
Sbjct: 352 VSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411
Query: 138 -------SNIFLTTAIIEMYAK 152
+++++ +A+I+MYAK
Sbjct: 412 SLRRGISTDVYVGSALIDMYAK 433
>gi|449440993|ref|XP_004138268.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
gi|449523770|ref|XP_004168896.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Cucumis sativus]
Length = 549
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I G+ G +N+ L F ++ +LG D T+V V + + P G I L+
Sbjct: 176 IICGFGSCGYWNQGLLLFSRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCN 235
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
D + + S+ S Y+ + L D V+ A+I+GYSQAG F +A+ F
Sbjct: 236 FDSNEHVASALVSMYSRCNCMDSAYLVFSSLLQPDLVTWSALITGYSQAGDFRKAMLFFQ 295
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+L G D + + +LAA++ + G +SN +++++I+MY+K
Sbjct: 296 RLNMQGKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQGIESNEMISSSLIDMYSK 353
Score = 39.7 bits (91), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+GYSQAG F +A+ F +L G D + + +L A++ G I L+
Sbjct: 277 LITGYSQAGDFRKAMLFFQRLNMQGKKMDSILIASILAATAQSTNIRHGIEIHGYVLRQG 336
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + SS Y+ G + L ++ + ++I G G ++ALE F
Sbjct: 337 IESNEMISSSLIDMYSKCGYLSLGIRVFHVMSQKNISTYNSVIWGLGLHGLASKALEMFE 396
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+L ++G+ +E T +L A G GK
Sbjct: 397 ELLTIGLVPNESTFSALLFACCHAGLNSVGK 427
Score = 39.3 bits (90), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 74/179 (41%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--GPGAW---ILAKELQIE 55
+I Y++A +F +AL F + D T ++ A S W + + L
Sbjct: 75 IIRAYAKAYKFRDALSLFLTMSGTETSPDNFTYSCIIRACSENHHREWLKFVHGRVLVTG 134
Query: 56 LDLSSYSLSSKTSRYAH----------SGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
L S+ + Y++ GRI+ D V ++I G+ G +N+ L F
Sbjct: 135 FGLDPICCSALVTAYSNLDLIEEASKVFGRIQ-HPDLVMWNSIICGFGSCGYWNQGLLLF 193
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ +LG D T+V V + + P L GK SN + +A++ MY++
Sbjct: 194 SRMRNLGELPDGYTVVGVASGIAEPSLLSTGKGIHGLCLKCNFDSNEHVASALVSMYSR 252
>gi|224101423|ref|XP_002312273.1| predicted protein [Populus trichocarpa]
gi|222852093|gb|EEE89640.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG--------PGAWILAKEL 52
+ISG+ Q+G ++E ++ + ++ ++T VV L+A G W+ K +
Sbjct: 474 IISGFVQSG---NSIEAIHLVDQMYLNCLKITDVVFLSAIQACADMVCLEKGKWLHHKLI 530
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALE 103
++ Y ++ T YA G +R A + VS AMISGY GR + A+
Sbjct: 531 MYGVEKDLYIETALTDMYAKCGDLRTAEGVFHSMSEKSVVSWSAMISGYGMHGRIDAAIT 590
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ LG+ + +T + +L+A S G+++ GK
Sbjct: 591 FFNQMVELGIKPNHITFMNILSACSHSGSVEQGK 624
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+IS Y G NEALE F L + V D V M+ V A S G LAK +
Sbjct: 171 IISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKSIHGYIVRRR 230
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRL---ARDPVSCKAMISGYSQAGRFNEALEPFG 106
LD S + S + RI + + +S +MI Y+++G F EA E F
Sbjct: 231 VDTCEALDNSLIEMYSSCDDLYSAERIFVNMANKTFISWTSMIYCYNRSGWFKEAFEIFV 290
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ L V + +T++ VL + SG L GK
Sbjct: 291 KMLELKVEPNVITIMGVLKSCSGLSWLREGK 321
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI----------LAK 50
MI Y+++G F EA E F K+ L V + +T++ VL + SG +W+ L K
Sbjct: 272 MIYCYNRSGWFKEAFEIFVKMLELKVEPNVITIMGVLKSCSGL-SWLREGKLIHCYALKK 330
Query: 51 ELQIELDLSS---YSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEP 104
+ + D L + + + ++ LA R+ VS ++S ++ G F EAL
Sbjct: 331 GMTFQDDCLGPVLIELYAGCGKLGYCEKVLLAIGERNVVSWNTLLSINARQGLFEEALVL 390
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
F +++ G+ D ++ ++A G+L G+ F+ A+I MY++
Sbjct: 391 FVQMQKRGLMLDFFSLSSAISACGNVGSLQLGRQIHGYAIKRCILGEFVKNALIGMYSR 449
Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 30/59 (50%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
RD VS ++IS Y G NEALE F L + V D V M+ V A S G L KS
Sbjct: 163 RDLVSWSSIISSYVDKGEANEALEMFRLLVNERVKLDWVIMLSVTEACSKLGILKLAKS 221
>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
MI+ SQ GR EALE F +++ GV + VT+ +L A A + K L+
Sbjct: 357 MIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ Y S+ YA GRI+ +R + V A+I+GY+ G+ EA+E F
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ G D ++ VL+A S G + G S+ + A +E YA M
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACM 529
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
VS +MI+ SQ GR EALE F +++ GV + VT+ +L A AL GK
Sbjct: 352 VSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCF 411
Query: 138 -------SNIFLTTAIIEMYAK 152
+++++ +A+I+MYAK
Sbjct: 412 SLRRGISTDVYVGSALIDMYAK 433
>gi|326512500|dbj|BAJ99605.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 621
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q+G A+ F ++++ V + +T+V +L+A + L KEL ++ +S
Sbjct: 359 LISGYAQSGHAERAIMLFRQMKTRRVSVNNLTIVGLLSACGSLRSLCLGKELHAQVIKNS 418
Query: 61 YS-----------LSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
K Y ++ RI RD V+ AMISGY+ G EAL+
Sbjct: 419 IQENLQIGSTLVWCYCKCGEYTYAARILEEMPDRDAVAWTAMISGYNSVGHSAEALKSLD 478
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ GV + T L A + AL G+ SN+F+ +++I+MY +
Sbjct: 479 DMLWDGVTPNTYTYSSALKACAKLEALQDGRRIHGVVNKTPAFSNVFVGSSLIDMYMR 536
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY ++G E + F + + G + ++ V +L + L +++ +
Sbjct: 158 MMNGYQKSGNHGEVVRLFLDMIASGERGNSLSFVCLLKSCGEQCDGKLGQQVHCCVVKGG 217
Query: 61 YSL----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+S S+ YA G + A RD +S MI+ Y Q GR ++AL+ F
Sbjct: 218 WSNVIMDSAVAHFYAQCGDVDGASMMFDKMTSRDVISWTTMITAYVQHGRGDKALQMFPA 277
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ S G H +E T+ +L A + AL G K++I + +A++ MYA+
Sbjct: 278 MISEGFHPNEFTVCSILKACAEEKALRCGKQLHGALVKKLFKNDIHVGSALVTMYAR 334
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y Q GR ++AL+ F + S G H +E T+ +L A + A K+L L
Sbjct: 258 MITAYVQHGRGDKALQMFPAMISEGFHPNEFTVCSILKACAEEKALRCGKQLHGALVKKL 317
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ + YA + + A R+ ++ ++ISGY+Q+G A+ F
Sbjct: 318 FKNDIHVGSALVTMYARNREVSDAQAVFDVMPRRNTITWTSLISGYAQSGHAERAIMLFR 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ V + +T+V +L+A +L GK
Sbjct: 378 QMKTRRVSVNNLTIVGLLSACGSLRSLCLGK 408
>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
Length = 849
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------I 54
+++ Y+Q G LE +++ LGV + VT+ V+ A S G W A+++
Sbjct: 153 LLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGAVSELGDWDEARKIHARAAATC 212
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+L +++ YA G I A +D C AMIS Y Q G +A+ F
Sbjct: 213 QLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLGYTVDAVSTF 272
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGA------------LDFGKSNIFLTTAIIEMYAK 152
+++ G+ ++VT ++ A + G L + ++ + TA++ MY++
Sbjct: 273 NRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSKLRPDVVVNTALVSMYSR 331
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 26/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q G +A+ F +++ G+ ++VT ++ A + G + A+ + LS
Sbjct: 255 MISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCFILSK 314
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ S Y+ G + AR + V+ MI+GY+Q G +EAL+ +
Sbjct: 315 LRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIAGYAQEGYTDEALQLYV 374
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
+E+ GV DE+T V VL + S L G+ S++ + +A+I MY+
Sbjct: 375 SMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYDSSLTVLSALITMYS 431
Score = 35.4 bits (80), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ ++ G AL F K++ GV + VT V + A S GA + + + ++
Sbjct: 459 MLTALTRNGEGRSALALFRKMDLEGVKANVVTFVSTIDACSSIGALVEGHAIFERVIVTG 518
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y + D V ++I+ Y + GR + ALE F L + VT
Sbjct: 519 YLI-----------------DVVLGTSLINLYGKCGRLDYALEVFHHLSFKNI----VTW 557
Query: 121 VVVLAASSGPG 131
+LAASS G
Sbjct: 558 NTILAASSQNG 568
>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 21/152 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
MI GY Q G F EALE F +++ + + + VL+A + GA WI AK
Sbjct: 273 MIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNS 332
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
I+LD +S YA GRI LA ++ S AMI G + GR +A++
Sbjct: 333 IQLD--GVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDL 390
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K++ ++ +E+T V VL A + G + G
Sbjct: 391 FSKMD---INPNEITFVGVLNACAHGGLVQKG 419
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD----- 134
RD +S AMI GY Q G F EALE F +++ + + + VL+A + GALD
Sbjct: 265 RDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWI 324
Query: 135 --FGKSNIF-----LTTAIIEMYAK 152
+ K N L T++++MYAK
Sbjct: 325 HTYAKRNSIQLDGVLGTSLVDMYAK 349
>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
Length = 1124
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
+I+ Y AG EA+ + G+ D T V VLTA ++G W A+ Q
Sbjct: 622 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAE--Q 679
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S + ++ Y G + AR D V+ AM+ GY+ G EAL+
Sbjct: 680 EGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDL 739
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F +++ G+ D + L+A + GALD G+ N L TA+I+MYAK
Sbjct: 740 FLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAK 799
>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
Length = 1100
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
+I+ Y AG EA+ + G+ D T V VLTA ++G W A+ Q
Sbjct: 598 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAAE--Q 655
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S + ++ Y G + AR D V+ AM+ GY+ G EAL+
Sbjct: 656 EGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDL 715
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F +++ G+ D + L+A + GALD G+ N L TA+I+MYAK
Sbjct: 716 FLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAK 775
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFN-EALEPFGKLESLGVHT-DEVTMVVVLTASS-----GPGAWILAKELQ 53
+I GYSQ + E + F KL G + T+ VL A + G G + + L+
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S + +S + Y I AR + V+ AMISG+++ G +EA+E
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++ G+ D +T+V V++A + GALD G +++ L+TA+++MYAK
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAK 240
>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
[Brassica oleracea]
Length = 968
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I GYSQ+ +L+ + +++S G+ D T+ +L+A S + L KE ++
Sbjct: 465 LIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNR 524
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S+ S S Y H G + A + VS M++GY Q G AL F
Sbjct: 525 LERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFR 584
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV E++M+ V A S +L G+ N F+ ++I+MYAK
Sbjct: 585 QMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAK 642
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
M++GY Q G AL F ++ GV E++M+ V A S + L +E L+
Sbjct: 566 MVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCL 625
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +++ S YA +G + + R S AM+ GY GR EA++ F
Sbjct: 626 LEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFE 685
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G DE+T + VL A + G + G
Sbjct: 686 EMQRTGHCPDELTFLGVLTACNHSGLVHEG 715
>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
Length = 1037
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q G + +L F ++ V +DE T VL A S A+ KE+ + S
Sbjct: 712 IISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSG 771
Query: 61 Y-----SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+ + S+ Y+ G + + +D + +MI G+++ G +EAL F
Sbjct: 772 FGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLF 831
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E L + DEVT + VL A + G + G+
Sbjct: 832 QKMEELQIKPDEVTFLGVLIACTHSGLISEGR 863
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 19/151 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++S ++++G + L F + + G D+ + VVL+A S G +LA Q+ D+
Sbjct: 138 LLSCHARSGSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVG--VLAYGRQVHCDVV 195
Query: 60 SYSLSSKT-------SRYAHSGRIRLAR---DPVSC------KAMISGYSQAGRFNEALE 103
SS YA G + AR D ++C +MI+ Y + G + EAL
Sbjct: 196 KSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALA 255
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ +G D+VT+V +++ + G LD
Sbjct: 256 LFSRMDKMGSAPDQVTLVTIISTLASSGRLD 286
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y + G + EAL F +++ +G D+VT+V +++ + G A L ++ S
Sbjct: 240 MIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPS 299
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
V+ A+ISG++Q+G L + + S G+ T
Sbjct: 300 ---------------------TVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTF 338
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+A++ A G+ +N+F+ +++I +YAK
Sbjct: 339 ASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK 382
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISG++Q+G L + + S G+ T +L+A++ A++ +++
Sbjct: 306 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 365
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--PVSCK-------AMISGYSQAGRFNEALEPFG 106
LD + + SS + YA G A++ +SC+ AM++G+ Q EA+ F
Sbjct: 366 LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQ 425
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + TDE T V +L A + + GK ++F+ A ++MY+K
Sbjct: 426 YMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK 483
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+ Q +EA++ F ++ G+ VT +L+ SG + K++
Sbjct: 609 LIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKSG 668
Query: 54 -------IELDLSSYSLSSKTSRYAHSGRIRLA--RDPVSCKAMISGYSQAGRFNEALEP 104
+ + L+ L SK A+ + ++ A+ISGY+Q G + +L
Sbjct: 669 VLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVS 728
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ V +DE T VL A S A GK S T+A+I+MY+K
Sbjct: 729 FWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLITKSGFGSYETATSALIDMYSK 788
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M++G+ Q EA+ F + + TDE T V +L A + ++ L K++
Sbjct: 407 MLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNC 466
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + ++ Y+ G I A+ D +S A+ G +Q EA+
Sbjct: 467 MDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLK 526
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D+V+ + A S A + GK SN + +++I++Y+K
Sbjct: 527 RMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSK 584
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++GYSQ G EA++ F ++ S G+ E T+V VL A S G + + L++
Sbjct: 293 MVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLG 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ ++ ++ YA +G + AR C ++ISGY Q EAL +
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYR 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ G+ ++ TM VL A S L+ GK
Sbjct: 413 RMKTAGIIPNDPTMASVLKACSSLATLELGK 443
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY Q EAL + ++++ G+ ++ TM VL A S L K++
Sbjct: 394 LISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 453
Query: 54 --IELDLSSYSLSSKTSRYA--HSGRIRLARDP----VSCKAMISGYSQAGRFNEALEPF 105
+E+ + S +LS+ S+ G + R P VS AMISG S G+ +EALE F
Sbjct: 454 FGLEVPIGS-ALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 512
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + G+ D+VT V +++A S G ++ G
Sbjct: 513 EEMLAEGMEPDDVTFVNIISACSHKGFVERG 543
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 36/184 (19%)
Query: 1 MISGYSQAGRFNEALEPFG---KLESLGVHTDEVTMVVV-----------------LTAS 40
M+SGY+ GR EA++ F + + G +D V V+ +T
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIK 249
Query: 41 SGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNE 100
+G ++ + + SL+ + SG R+ ++ AM++GYSQ G E
Sbjct: 250 NGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD----RNSITWSAMVTGYSQNGESLE 305
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
A++ F ++ S G+ E T+V VL A S L+ GK ++F TTA+++
Sbjct: 306 AVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVD 365
Query: 149 MYAK 152
MYAK
Sbjct: 366 MYAK 369
>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 974
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISG+++ G EA+ F +L+ G+ ++ VL+A + G+ + A+ +
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG 339
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y S+ + YA ++ A R+ V AM+ G++Q G E +E F
Sbjct: 340 LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G DE T + +A + L+FG SN+F+ A+++MYAK
Sbjct: 400 CMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK 457
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+ISGY+Q +AL+ + + S + D+ VL A +G + +E+
Sbjct: 685 LISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTG 744
Query: 56 LDLSSYSLSSKTSRYAHSGRIR----------LARDPVSCKAMISGYSQAGRFNEALEPF 105
++ + SS YA G ++ + +S +MI G ++ G EALE F
Sbjct: 745 FNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIF 804
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + DEVT + VL+A S G + G+
Sbjct: 805 KQMEQQSIIPDEVTFLGVLSACSHAGRVSEGR 836
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G++Q G E +E F ++ G DE T + +A + +L + +
Sbjct: 381 MLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK 440
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA SG ++ AR D VS A+I GY Q +EA F
Sbjct: 441 FASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFR 500
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT------------TAIIEMYAK 152
++ S GV DEV++ +++A + L G+ L +++I+MY K
Sbjct: 501 RMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY + G EA++ F +++ +G D++T+V V+ A G A++L ++
Sbjct: 214 LIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP--- 270
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ V+ MISG+++ G EA+ F +L+ G+ ++
Sbjct: 271 ------------------NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSL 312
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + L++G N+++ +A++ MYAK
Sbjct: 313 GSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK 356
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
++S Y G F ++ F + + V +E T +VL+A SG G + +
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ YA +R AR D VS A+I+GY + G EA++ F
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFD 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+++ +G D++T+V V+ A G L
Sbjct: 233 RMQRVGHAPDQITLVTVVNAYVALGRL 259
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY+ G EA+ F +++ +G+ EVT +L G L +++ ++
Sbjct: 583 LIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641
Query: 57 --------DLSSYSLSSKTSRYAHS----GRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+S L + R+ S ++ + V A+ISGY+Q +AL+
Sbjct: 642 FLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQF 701
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIFLT---------TAIIEMYAK 152
+ + S + D+ VL A +G +L G+ S IF T +++I+MYAK
Sbjct: 702 YQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAK 761
>gi|302787038|ref|XP_002975289.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
gi|300156863|gb|EFJ23490.1| hypothetical protein SELMODRAFT_10002 [Selaginella moellendorffii]
Length = 730
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 19/164 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+I+ +S G + EA++ F ++E G D V+ V V +A S G I A+
Sbjct: 151 IIAAFSGHGHYREAVDLFYEMEKQGFKPDRVSFVSVFSACSILEDLSQGRRIHARFCDGR 210
Query: 56 LDLSSYSLSSKTSRYAHSGRI---RL------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L ++ + YA G + RL +R+ VS +MI+ Y+Q RF++A E F
Sbjct: 211 MKLDVSIGNTLLNMYARCGSLDDARLVFDSITSRNIVSWTSMIAAYAQFDRFHDAYEVFQ 270
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--NIFLTTAIIE 148
K +GV +EVT + +L A + AL + ++ LT+ I+E
Sbjct: 271 K---MGVAPNEVTFITILGACAEARALKQAREIHSLVLTSGILE 311
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 23/151 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y+Q RF++A E F K+ GV +EVT + +L A + A A+E+ L L+S
Sbjct: 252 MIAAYAQFDRFHDAYEVFQKM---GVAPNEVTFITILGACAEARALKQAREIH-SLVLTS 307
Query: 61 YSLSSKT--------SRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEA 101
L + + YA G + A R+ V+ ++I+ G EA
Sbjct: 308 GILEKQQLTVGNGLINTYAKCGSLSDAKTVFESMATAERNVVTWTSIIAACGLCGHPREA 367
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132
L F ++E G+ +E+T VL+A + G+
Sbjct: 368 LALFHRMELEGIPANEITFGTVLSACADLGS 398
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 22/132 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ + + G +A F ++ S + +T + GA+I +E++ +
Sbjct: 424 LINMFGKCGMLEDARAIFERMRSRNL----------VTWTGMLGAYIQQQEIR-----QA 468
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
SL + R ++ +D ++ M++ Y+QAG +EAL+ + ++ GV DE+T
Sbjct: 469 VSLFQQMERISY-------KDVMAWTTMVAAYAQAGYADEALKLYARMGLEGVAPDEITF 521
Query: 121 VVVLAASSGPGA 132
V +L A S GA
Sbjct: 522 VNLLHACSRMGA 533
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MI GY + G F ++ V D ++ ++ + G AK L E+ + +
Sbjct: 72 MIDGYVKRGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEAKRLFDEMPERN 127
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S S + G + A RD VS +M++ Y+Q G+ NEAL F ++ +
Sbjct: 128 LVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRA 187
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+GV E T+V +L+A + GALD G + N + TA+++MYAK
Sbjct: 188 VGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 241
>gi|255543589|ref|XP_002512857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547868|gb|EEF49360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 454
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
MI+ Y+Q G +EA E F + G V + VT+ +L A + GA I + +++
Sbjct: 264 MIAVYAQNGLSSEAFEVFHGMIKYGYVKYNAVTLSTLLLACAHSGALQTGKCIHDQVIRM 323
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
LD + +S Y GR+++AR S AM++GY G EAL F
Sbjct: 324 GLDDNVIVGTSLIDMYCKCGRVQMARKTFDGMKEKNVKSWTAMVAGYGMHGCAREALNIF 383
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ GV + +T V VLAA S G LD G
Sbjct: 384 YKMIRSGVKPNYITFVSVLAACSHAGLLDEG 414
>gi|147834109|emb|CAN62187.1| hypothetical protein VITISV_003709 [Vitis vinifera]
Length = 560
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M +GY G +++ L+ F + S+G D TMV +++ + P G I L+
Sbjct: 182 MAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPNLLGIGKGIHGFCLKSS 241
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D +++ S+ S Y+ + A D V+ A+I+G S++G + +AL F
Sbjct: 242 FDCNAHVGSALVSMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFR 301
Query: 107 KLESLGVHTDEVTMVVVLAASS-----GPGALDFG-------KSNIFLTTAIIEMYAK 152
K+ G D + + VLAAS GPG+ G +S + +++A+I+MY+K
Sbjct: 302 KMNMEGKRVDPILIXSVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSK 359
Score = 39.7 bits (91), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V AM +GY G +++ L+ F + S+G D TMV +++ + P L GK
Sbjct: 174 QDLVLWNAMAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPNLLGIGKGI 233
Query: 138 ----------SNIFLTTAIIEMYAK 152
N + +A++ MY++
Sbjct: 234 HGFCLKSSFDCNAHVGSALVSMYSR 258
>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
Length = 696
Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 16/141 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+ Y+Q G EAL F +++ V V+ L A + GA +E+ +E
Sbjct: 285 MIAAYAQHGNPQEALNLFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAH 341
Query: 58 LSSYSL-SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L+S + +S S YA G + AR D SC AMI+ ++Q GR +AL + +
Sbjct: 342 LASPQMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRR 401
Query: 108 LESLGVHTDEVTMVVVLAASS 128
+E G+ D +T V VL A S
Sbjct: 402 MEQEGIPADGITFVSVLVACS 422
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 78/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
+IS Y++AGR A+ + ++ + GV + VT L + ILA +
Sbjct: 82 IISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASK 141
Query: 52 LQIE--LDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + L S ++ K + ++ AR+ S AMIS Y QAG EALE F
Sbjct: 142 VPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFS 201
Query: 107 KLESL-GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + + + T +L A G G L+ G+ +N+ + A++ MY K
Sbjct: 202 RMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGK 260
Score = 43.9 bits (102), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 77/180 (42%), Gaps = 33/180 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MIS Y QAG EALE F ++ + + + T +L A G G L K ++ L+
Sbjct: 183 MISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGN--LEKGRKVHRHLA 240
Query: 60 SYSLSSKT-------SRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALE 103
S + + Y G AR+ +S +MI+ Y+Q G EAL
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
F +++ V V+ L A + GALD G+ ++ + T+++ MYA+
Sbjct: 301 LFKRMD---VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYAR 357
>gi|115450020|ref|NP_001048611.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|48716334|dbj|BAD22946.1| pentatricopeptide repeat-containing protein-like [Oryza sativa
Japonica Group]
gi|113538142|dbj|BAF10525.1| Os02g0830000 [Oryza sativa Japonica Group]
gi|125584254|gb|EAZ25185.1| hypothetical protein OsJ_08985 [Oryza sativa Japonica Group]
Length = 500
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI-------- 47
++S Y AG F EA++ F ++ V + ++ VL A GA W+
Sbjct: 191 ILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQGRWVHAHLVAAH 250
Query: 48 --LAKELQIE---LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
+AK+ + +D+ + S +T+R SG RD + AM+SG S GR EA+
Sbjct: 251 GAMAKDGMVATALVDMYAKCGSLETARQVFSGMAE--RDVFAYTAMVSGLSDHGRCVEAI 308
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPG 131
E FG+++ GV +EVT + VL+A G
Sbjct: 309 ELFGRMQEEGVRPNEVTFICVLSACGRAG 337
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 26/124 (20%)
Query: 55 ELDLSSYSLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
++++S + S TS Y + R+ AR ++ A++S Y AG F EA+
Sbjct: 146 DVNVSCRDVCSWTSLLTAYGRAARLHHARALFDAMPHKTTIAWAAILSAYVGAGSFAEAV 205
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIE 148
+ F ++ V + ++ VLAA GAL+ G+ + + TA+++
Sbjct: 206 DVFQEMLRARVRPNRAVILSVLAACGALGALEQGRWVHAHLVAAHGAMAKDGMVATALVD 265
Query: 149 MYAK 152
MYAK
Sbjct: 266 MYAK 269
>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
Length = 693
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---SGP--GAWILAKELQIE 55
MI G++Q +A F +++ V D T+V V+ A S P WI ++ +
Sbjct: 293 MILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQ 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD Y L++ Y+ GR+ +AR ++ AMI GY G A+E F
Sbjct: 353 LDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFE 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ G +E T + VLAA S G +D G+
Sbjct: 413 EMKGTGSLPNETTFLSVLAACSHAGLVDEGQ 443
Score = 48.9 bits (115), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQ 53
+++GY++ G + A+E ++ E G D VT+V VL A + A +E L+
Sbjct: 88 VVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALR 147
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
LD ++ Y G + AR + VS AMI GY+ G EA+
Sbjct: 148 AGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMAL 207
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F ++ GV + +++ L A G LD + SN+ +T A+I YAK
Sbjct: 208 FWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAK 267
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 33/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---ELQIELD 57
MI GY+ G EA+ F ++ GV + +++ L A G + EL + +
Sbjct: 191 MIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVG 250
Query: 58 LSSYS--LSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
LSS ++ + YA R LA + +S AMI G++Q +A F
Sbjct: 251 LSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLF 310
Query: 106 GKLESLGVHTDEVTMVVVLAAS---SGP------------GALDFGKSNIFLTTAIIEMY 150
+++ V D T+V V+ A S P LD ++++ TA+I+MY
Sbjct: 311 ARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLD---QDVYVLTALIDMY 367
Query: 151 AK 152
+K
Sbjct: 368 SK 369
>gi|255549476|ref|XP_002515791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545119|gb|EEF46630.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 352
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI Y+Q G +AL F +++ G E T+ VL AS+ + K+L ++
Sbjct: 57 MIGTYTQNGEEQKALGLFLEMQREGNPFSEFTVSTVLCASAAKSYTFVCKQLHAFAMKVA 116
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+D + Y ++ YA SG I+ R V+ +M++GY Q + EAL F
Sbjct: 117 MDANVYISTALLDVYAKSGLIKEGIRVFEGMSERTAVTWSSMVAGYVQNELYEEALASFN 176
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ ++G+ ++ T+ V A +G A G+ SN ++ +++++MYAK
Sbjct: 177 RARAIGLEYNQFTISSVSCACAGLAASIEGRQVHAVVCKTGFGSNSYVASSLVDMYAK 234
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
M++GY Q + EAL F + ++G+ ++ T+ V A +G A I +++ + +
Sbjct: 158 MVAGYVQNELYEEALASFNRARAIGLEYNQFTISSVSCACAGLAASIEGRQVHAVVCKTG 217
Query: 60 ----SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SY SS YA G ++ A + V MIS +++ E + F
Sbjct: 218 FGSNSYVASSLVDMYAKCGSVKEAYIAFLDAQRTNIVLWNVMISAFAKHSHSLEVMILFE 277
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
K++ +G+H DEVT V VL+A S
Sbjct: 278 KMQQIGMHPDEVTYVSVLSACS 299
>gi|357118743|ref|XP_003561109.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Brachypodium distachyon]
Length = 535
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
R+ VS AM+SGY+Q GR A+E F ++ E GV +E+T+ VL A + GA++ G
Sbjct: 184 RNVVSWTAMVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMELGTK 243
Query: 139 ------------NIFLTTAIIEMYAK 152
N+F+T A++EMYAK
Sbjct: 244 VEEYARGKGHLGNVFVTNALLEMYAK 269
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 76/172 (44%), Gaps = 36/172 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL- 58
M+SGY+Q GR A+E F ++ E GV +E+T+ VL A + GA L +++ E
Sbjct: 192 MVSGYAQNGRHEAAVETFLEMWEGAGVQPNELTVSSVLPACAAVGAMELGTKVE-EYARG 250
Query: 59 -----SSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALE 103
+ + ++ YA G I+ A RD S MI ++ G + EAL
Sbjct: 251 KGHLGNVFVTNALLEMYAKCGSIQRAWQVFQGIGHRRDLCSWNTMIMAFAVHGLWMEALA 310
Query: 104 PFGKLE-------SL-----------GVHTDEVTMVVVLAASSGPGALDFGK 137
F KL SL GV D +T V V+ A + G +D GK
Sbjct: 311 LFHKLRVRISCSNSLVYFFSIPTHMTGVKPDGITFVGVILACTHGGLVDEGK 362
>gi|125541717|gb|EAY88112.1| hypothetical protein OsI_09550 [Oryza sativa Indica Group]
Length = 500
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 20/149 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI-------- 47
++S Y AG F EA++ F ++ V + ++ VL A GA W+
Sbjct: 191 ILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQGRWVHAHLVAAH 250
Query: 48 --LAKELQIE---LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
+AK+ + +D+ + S +T+R SG RD + AM+SG S GR EA+
Sbjct: 251 GAMAKDGMVATALVDMYAKCGSLETARQVFSGMAE--RDVFAYTAMVSGLSDHGRCVEAI 308
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPG 131
E FG+++ GV +EVT + VL+A G
Sbjct: 309 ELFGRMQEEGVRPNEVTFICVLSACGRAG 337
Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 14/84 (16%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
++ A++S Y AG F EA++ F ++ V + ++ VLAA GAL+ G+
Sbjct: 186 IAWAAILSAYVGAGSFAEAVDVFQEMLRARVRPNRAVILSVLAACGALGALEQGRWVHAH 245
Query: 138 ---------SNIFLTTAIIEMYAK 152
+ + TA+++MYAK
Sbjct: 246 LVAAHGAMAKDGMVATALVDMYAK 269
>gi|334187347|ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M+ GY + + +E F K+++LG+ D + V+++ S GA +L K L
Sbjct: 404 MLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTS 463
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LDL+ ++S Y G + +A + ++ AMI+ Y + +A+ F +
Sbjct: 464 LDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDR 523
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ S +T+V +L A G+L+ G+ N+ L+ A+I+MYAK
Sbjct: 524 MVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAK 580
Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI+ Y + +A+ F ++ S +T+V +L A G+ +I E
Sbjct: 504 MIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETE 563
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
++ L LS+ + YA G + +R D V MISGY G A+
Sbjct: 564 HEMNLSLSA----ALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAI 619
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
F ++E V T + +L+A + G ++ GK +FL
Sbjct: 620 ALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGK-KLFL 658
>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 579
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MI YS+ +E L + ++ S G+ D T V L A S G W A +
Sbjct: 55 MIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFG 114
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
D+ + +SS + YA SG++ A RD VS MI+G++Q+GR +A++
Sbjct: 115 YGFDV--FVVSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDI 172
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ ++ D V MV ++ A + G FG S + L T++I+MYAK
Sbjct: 173 YRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAK 232
Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ----IEL 56
+ISG++Q G N+ L ++++ G D V+++ L+A + G + K L L
Sbjct: 257 LISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRL 316
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L S ++ YA G + AR D + AMIS Y G EAL F K
Sbjct: 317 YLDKVSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLK 376
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + D T +L+A S G ++ G+
Sbjct: 377 MKETNITPDHATFASLLSACSHSGLVEEGQ 406
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFN-EALEPFGKLESLGVHT-DEVTMVVVLTASS-----GPGAWILAKELQ 53
+I GYSQ + E + F KL G + T+ VL A + G G + + L+
Sbjct: 61 LIKGYSQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLK 120
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
S + +S + Y I AR + V+ AMISG+++ G +EA+E
Sbjct: 121 DGFGSSLFVQTSLVNFYGKCEEIGFARKVFEEMPVRNLVAWTAMISGHARVGAVDEAMEL 180
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++ G+ D +T+V V++A + GALD G +++ L+TA+++MYAK
Sbjct: 181 FREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAK 240
>gi|413949122|gb|AFW81771.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 684
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-LAKELQ-IEL-D 57
M++ Y+QAG N A F K+ G+ +E T+ + A + P A + L ++ I +
Sbjct: 408 MLTCYAQAGDCNGATNAFIKMSMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIRH 467
Query: 58 LSSYSL---SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
Y+L S+ S YA G I A RD VS +M+SGY+Q G +AL+ F
Sbjct: 468 RCHYALCVSSALVSMYARKGSIENAQCVFEKQTDRDLVSGNSMLSGYAQHGYNQKALDVF 527
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E G+ D +T + V+ + G ++ GK
Sbjct: 528 RQMEVEGIEMDGLTFLSVIMGCTHAGLVEEGK 559
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---PGAWILAKELQIELD 57
MI+G Q G A F ++ GV +++T +LT S P + + E
Sbjct: 311 MINGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQSHAQVIKTNYECT 370
Query: 58 -------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ SYS T ++ +D VS AM++ Y+QAG N A F K+
Sbjct: 371 PIVGTALMVSYSKLCGTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMSM 430
Query: 111 LGVHTDEVTMVVVLAASSGPGA-LDFGKS------------NIFLTTAIIEMYAK 152
G+ +E T+ + A + P A +D G+ + +++A++ MYA+
Sbjct: 431 HGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIRHRCHYALCVSSALVSMYAR 485
>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
Length = 645
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
+I+ Y AG EA+ + G+ D T V VLTA ++G W A++
Sbjct: 143 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEG 202
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
I S + ++ Y G + AR D V+ AM+ GY+ G EAL+
Sbjct: 203 IAQ--SVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDL 260
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++ GV D + L+A + GALD G+ N L TA+I+MYAK
Sbjct: 261 FLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAK 320
>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 781
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYSQ+G EAL F ++E G + + L+ + A L K+L L
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y Y G I A +D VS MI+GYS+ G AL F
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFE 499
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ G+ D+ TMV VL+A S G +D G+ + T
Sbjct: 500 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY Q EA E F K+ +EV+ +L +AKEL + +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342
Query: 61 YS-LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ + YA G+I A RDPVS AMI+GYSQ+G EAL F ++E
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G + + L+ + AL+ GK + F+ A++ MY K
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
>gi|297720639|ref|NP_001172681.1| Os01g0884800 [Oryza sativa Japonica Group]
gi|20161229|dbj|BAB90156.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|255673935|dbj|BAH91411.1| Os01g0884800 [Oryza sativa Japonica Group]
Length = 517
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++G ++AG A+ + + + GV TDE + VL++ +G A L + + S
Sbjct: 115 LVTGLARAGSHGLAVRAYRDMVAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSG 174
Query: 61 YSL-----SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
+ +S S YA +G +R AR ++ A+I GY+Q GR E+L +
Sbjct: 175 HEPFLSVGNSLVSMYAKTGSLRDARTVFDAMRSRCAITWTALIVGYAQNGRGRESLAVYA 234
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
+ G D VT V +L A S G LD G+++
Sbjct: 235 DMARSGCRPDYVTFVGLLFACSHAGLLDAGRAHF 268
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
IS S+AG AL F ++ + G+ DE T+ +L +++ A A + L
Sbjct: 16 ISRCSRAGLHRRALALFTEMRARGLRADEYTLPPILNSAALLRAPPAAALHALLLRAGLA 75
Query: 62 S----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
S ++ YA R+ AR D V+ ++++G ++AG A+ + +
Sbjct: 76 SHLHVANALVDAYAKLSRLGAARAVFDEMPRRDVVTWTSLVTGLARAGSHGLAVRAYRDM 135
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS----------NIFLT--TAIIEMYAK 152
+ GV TDE + VL++ +G AL+ G+S FL+ +++ MYAK
Sbjct: 136 VAAGVATDEFAVAAVLSSCAGSTALELGRSVHAAAVRSGHEPFLSVGNSLVSMYAK 191
>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 776
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYSQ+G EAL F +E G + + L+ + A L K+L L
Sbjct: 375 MIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 434
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y Y G I A +D VS MI+GYS+ G EAL F
Sbjct: 435 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFE 494
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ G+ D+ TMV VL+A S G +D G+
Sbjct: 495 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQ 526
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY Q EA E F ++ +EV+ +L +AKEL + +
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMAKELFDVMPCRN 337
Query: 61 YS-LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ + YA G+I A RDPVS AMI+GYSQ+G EAL F +E
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G + + L+ + AL+ GK + F+ A++ MY K
Sbjct: 398 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 451
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 38/183 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+G+++ G + EAL+ F K++ V + T V L +S G L K +
Sbjct: 178 IITGFTRTGLYKEALDTFSKMD---VEPNLATYVCALVSSGRVGCLSLGKGIHGLILKRA 234
Query: 54 -----------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
I++ + LS + + + +D VS +MISG R NEA+
Sbjct: 235 SLISLETGNALIDMYVKCEQLSDAMTVFGELQK----KDKVSWNSMISGLVHCERSNEAI 290
Query: 103 EPFGKLE-SLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEM 149
E F ++ S G+ D + VL+A + GA+D+G K + + TAI++M
Sbjct: 291 ELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDM 350
Query: 150 YAK 152
YAK
Sbjct: 351 YAK 353
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 15/86 (17%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
RD VS +I+G+++ G + EAL+ F K++ V + T V L +S G L GK
Sbjct: 169 VRDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEPNLATYVCALVSSGRVGCLSLGKG 225
Query: 138 ---------SNIFLTT--AIIEMYAK 152
S I L T A+I+MY K
Sbjct: 226 IHGLILKRASLISLETGNALIDMYVK 251
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q R NEA+ F +++ V DE+ M+ L+A + GA L + + +D
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S ++ YA G+I A + ++ +MI G + G EALE F
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E + +E+T V +L+A G ++ G+
Sbjct: 362 CMERNRIKPNEITFVAILSACCHVGLVEMGR 392
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S A+I+GY+Q R NEA+ F +++ V DE+ M+ L+A + GAL+ G+
Sbjct: 234 RNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWI 293
Query: 138 ---------SNIF-LTTAIIEMYAK 152
S I L A+I+MYAK
Sbjct: 294 HNYIDKHGLSKIVPLNNALIDMYAK 318
>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 692
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
+I+ Y AG EA+ + G+ D T V VLTA ++G W A++
Sbjct: 190 LITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEG 249
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
I S + ++ Y G + AR D V+ AM+ GY+ G EAL+
Sbjct: 250 IAQ--SVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDL 307
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F +++ GV D + L+A + GALD G+ N L TA+I+MYAK
Sbjct: 308 FLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAK 367
>gi|449527613|ref|XP_004170804.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like, partial [Cucumis sativus]
Length = 315
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 21/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MI+GY + EALE F + LG D+VTM+ +L+AS+ G + K++ +
Sbjct: 20 MIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMC 79
Query: 57 --DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
DLS ++ YA G I A +D S ++I G + G E++ F
Sbjct: 80 CGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHGHAEESINLF 139
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++ L + +E+T V VL A S G + G+ N+F I+ Y M
Sbjct: 140 QEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKNVFKIEPNIKHYGCM 193
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D V+ AMI+GY + EALE F + LG D+VTM+ +L+AS+ G L+ GK
Sbjct: 12 KDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKI 71
Query: 139 ------------NIFLTTAIIEMYAK 152
++ L+ A+I+MYAK
Sbjct: 72 HRSIFDMCCGDLSVLLSNALIDMYAK 97
>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
+ISG++Q + + LE F + + + ++ T +L+A +G GA A I++
Sbjct: 178 IISGFAQECQVDVCLELFSVMRNSTLKPNDFTFTSLLSACTGSGALGQGTSAHCQIIQMG 237
Query: 58 LSSY--SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SY ++ S Y SG + A +D VS +MISGY+Q G +A++ F
Sbjct: 238 FHSYLHVANALISMYCKSGSVHDAFYIFNNIYSKDIVSWNSMISGYAQHGLAMQAIDLFE 297
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K+ LGV D +T + VL+A G + G++
Sbjct: 298 KMTKLGVKPDSITFLGVLSACRHAGFVQGGRN 329
>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g47840
gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 706
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GY QAG E + F + G + + +L+ S G + A L
Sbjct: 382 IIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFG 441
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S SS + Y+ G I+ A D VS AMI+GY++ G+ EA++ F
Sbjct: 442 LEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFE 501
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K +G D VT + VL A + G LD G
Sbjct: 502 KSLKVGFRPDSVTFISVLTACTHSGQLDLG 531
Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGP-----GAWILAKELQ 53
+I Y A +EAL F + + V D + VVL A G + A ++
Sbjct: 77 IIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVK 136
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S Y SS Y G+I + R+ V+ A+I+G AGR+ E L
Sbjct: 137 TSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTY 196
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ +D T + L A +G + +GK+
Sbjct: 197 FSEMSRSEELSDTYTFAIALKACAGLRQVKYGKA 230
Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I Y + G+ +A+E F K+ + V +E T + +A + + ++L + L
Sbjct: 281 LIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340
Query: 58 LS-SYSLSSKTSR-YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S S+S+ + Y+ G + A RD +S +I GY QAG E + F
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG-----------ALDFG-KSNIFLTTAIIEMYAK 152
+ G + + +L+ S AL FG + N + +++I MY+K
Sbjct: 401 WMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSK 458
>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 861
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+ISGY + +A F ++ +G+ D+ T VL AS+G G I A+ ++ E
Sbjct: 532 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 591
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L RD V+ AMI GY+ G+ EA++ F
Sbjct: 592 LQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFE 651
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + + VT + +L A + G +D G
Sbjct: 652 RMILENIKPNHVTFISILRACAHMGLIDKG 681
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
MI+GYSQ +AL F +L S G+ DE+++ V A S G + LA +
Sbjct: 311 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSS 370
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LD+ ++ + K A + R+ RD VS A+I+ + Q G+ E L F
Sbjct: 371 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 430
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + DE T VL A +G G+L +G SN + ++I+MY+K
Sbjct: 431 SMLRSRIEPDEFTFGSVLKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 487
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q R NEA+ F +++ V DE+ M+ L+A + GA L + + +D
Sbjct: 242 VIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHG 301
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
S ++ YA G+I A + ++ +MI G + G EALE F
Sbjct: 302 LSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFS 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E + +E+T V +L+A G ++ G+
Sbjct: 362 CMERNRIKPNEITFVAILSACCHVGLVEMGR 392
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ +S A+I+GY+Q R NEA+ F +++ V DE+ M+ L+A + GAL+ G+
Sbjct: 234 RNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALSACAHLGALELGEWI 293
Query: 138 ---------SNIF-LTTAIIEMYAK 152
S I L A+I+MYAK
Sbjct: 294 HNYIDKHGLSKIVPLNNALIDMYAK 318
>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g24000, mitochondrial-like [Glycine max]
Length = 622
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA--SSG---PGAWILAKELQIE 55
+I GY++ G EAL + +++ + T +L++ S G G W+LA ++
Sbjct: 222 LIGGYAKKGEGEEALALYLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLAHLMKPG 281
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y ++ YA G+IR + D VSC +M++ Y+Q G EA++ F
Sbjct: 282 QKLVVYVGNTLLHMYAKLGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKEAMQQFE 341
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ S G+ +++T++ VL++ S LD GK
Sbjct: 342 EMISFGIEPNDITVLFVLSSCSHARLLDEGK 372
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 25/171 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q R + L F ++ S G + + ++ AS W+ +
Sbjct: 136 MISGYAQNERAKDTLVLFPRILSEGTKLNXFILSSLIHAS----CWMYGCHSNV---FVG 188
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCK------AMISGYSQAGRFNEALEPFGKLESLGVH 114
SL + +R + G L D CK A+I GY++ G EAL + +++
Sbjct: 189 SSLVNMXARCGYLGEEXLVFDNSWCKNEVSWNALIGGYAKKGEGEEALALYLRMQMEAYK 248
Query: 115 TDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAKM 153
+ T +L++ G L+ GK +++ ++ MYAK+
Sbjct: 249 PIQFTYSGILSSYLSMGCLEQGKWLLAHLMKPGQKLVVYVGNTLLHMYAKL 299
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY+Q +ALE F +L GV DEVT+V V++A + GA A ++ + S
Sbjct: 213 MVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSG 272
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ + S+ Y+ G + A R+ S +MI G++ GR A++
Sbjct: 273 FGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAIKL 332
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F + GV + VT V VL A S G +D G+
Sbjct: 333 FYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQ 366
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 23/106 (21%)
Query: 70 YAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y G +R ARD V+ AM++GY+Q +ALE F +L GV DEVT+
Sbjct: 186 YTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTL 245
Query: 121 VVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
V V++A + GA + N+ + +A+I+MY+K
Sbjct: 246 VGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSK 291
>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
Length = 597
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
+I+ Y AGR EA+ + GV D T V VLTA +G W A++
Sbjct: 148 LITAYMDAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEG 207
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
I ++ + ++ Y G + AR D V+ AM+ GY+ G EALE
Sbjct: 208 IAGNV--FVATAAVDLYVKCGEMDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALEL 265
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ G+ D T+ L+A + GALD G+ N L TA+I+MYAK
Sbjct: 266 FFAMQVEGMRPDCYTVAGALSACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAK 325
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 22/131 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLA-------RDP---VSCKAMISGYS 93
GA + A+ L++ + + L+S + YA GR+ A R P VS A+I+ Y
Sbjct: 94 GAQLHARSLKLPSHSNPHVLTSLLNLYARCGRLHDAQKAFDEMRQPPSTVSWTALITAYM 153
Query: 94 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIF 141
AGR EA+ + GV D T V VL A + L G+ N+F
Sbjct: 154 DAGRGLEAIGVARSAFASGVRPDSFTAVRVLTACARVADLVTGEEVWTAAEKEGIAGNVF 213
Query: 142 LTTAIIEMYAK 152
+ TA +++Y K
Sbjct: 214 VATAAVDLYVK 224
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 90/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSG----------------- 42
MISGY + RF +A+ F +++ G DE T+V L+A +
Sbjct: 315 MISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE 374
Query: 43 -----------------PGAWILAKELQIELDLSSY-SLSSKTSRYAHSGRIRLARD--- 81
G +A+ + E+ + + +S S Y + G +R ARD
Sbjct: 375 LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFD 434
Query: 82 --PVS----CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
PV AMI+GY Q F++A+ F +++ V D+ T+V +L + GAL+
Sbjct: 435 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQ 494
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK ++ + TA+IEMY+K
Sbjct: 495 GKWIHGYLDENRITMDVVVGTALIEMYSK 523
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q F++A+ F +++ V D+ T+V +LT + GA K + LD +
Sbjct: 447 MINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENR 506
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ Y+ G + + +D S ++I G + G+ +EAL F
Sbjct: 507 ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFS 566
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E +G D++T + VL+A S G ++ G+
Sbjct: 567 EMERVGAKPDDITFIGVLSACSHGGLVEEGR 597
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
M+ Y++ G + L F +L G+ D T VL A G + ++
Sbjct: 214 MVKMYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+DL +Y +S Y + A RD VS MISGY + RF +A+ F
Sbjct: 274 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFR 333
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFG-------KSNIFLTT----AIIEMYAK 152
+++ G DE T+V L+A + L+ G + + TT A+++MYAK
Sbjct: 334 EMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAK 391
>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g63370-like [Brachypodium distachyon]
Length = 940
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+ Y+Q+ R EALE F + + G+ D + + +L A SG +LAK+L I
Sbjct: 438 IITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNG 497
Query: 58 LSSYSLSSKT-SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
L + ++ Y G + + +D V+ +MI+ Y+ +G NEAL F +
Sbjct: 498 LLDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAE 557
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++S V D V +V +L A G +L GK
Sbjct: 558 MQSTDVQPDSVALVSILGAIGGLSSLAKGK 587
Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y+ +G NEAL F +++S V D V +V +L A G + KE+ L +
Sbjct: 538 MINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRN 597
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFG 106
+ + SS Y+ G + A + V CK AMI+ G +A++ F
Sbjct: 598 FHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFK 657
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--NIFLTTAIIEMY 150
++ GV D V+ + +L A S ++ GK ++ ++T +E +
Sbjct: 658 RMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPW 703
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL-AKELQ---IEL 56
M+S Y Q G + EA+E ++ G D +V L+++ G W+L KE+ I+
Sbjct: 337 MLSCYVQNGLYAEAIEFISEMLRGGFQPDHAC-IVSLSSAVGHLGWLLNGKEVHAYAIKQ 395
Query: 57 DLSSYSLSSKT-------SRY----AHS-GRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
L S + T RY AH R+R+ +D +S +I+ Y+Q+ R EALE
Sbjct: 396 RLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRI-KDHISWTTIITCYAQSSRHIEALEI 454
Query: 105 FGKLESLGVHTDEVTMVVVLAASSG 129
F + + G+ D + + +L A SG
Sbjct: 455 FREAQKEGIKVDPMMIGSILEACSG 479
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 13/150 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG Q G F +AL+ F ++ + + T V VL + L +EL L S
Sbjct: 237 MISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG 296
Query: 61 YSLSSKTS----RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
++ + + Y GR+ A +D +S +M+S Y Q G + EA+E +
Sbjct: 297 SEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISE 356
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G D +V + +A G L GK
Sbjct: 357 MLRGGFQPDHACIVSLSSAVGHLGWLLNGK 386
Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 18/155 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLE---SLGVHTDEVTMVVVLTASSGPGAWILAKEL----- 52
+I Y +G EAL + + + GV D T+ VL AS G E+
Sbjct: 132 LIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAV 191
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ LD S++ ++ + YA G + A RD S +MISG Q G F +AL
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ F ++ + + T V VL + L+ G+
Sbjct: 252 DLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGR 286
>gi|357513069|ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520845|gb|AET01299.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 355
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y F E L F ++ D T+ +VL + +G A L K++ + ++
Sbjct: 80 LIRAYLSLNLFKETLSLFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNG 139
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++L K S YA G + AR + V+ MI+GY GRF E E F
Sbjct: 140 FALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMIAGYGMHGRFEEVFEMFN 199
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ +G D V+ VVL A S G ++ G+
Sbjct: 200 RMVEVGERMDNVSFTVVLTACSHGGFVEKGR 230
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI GYSQAG EA+ F ++ GV +E T VLT+ + G G I A ++
Sbjct: 146 MIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSIHASAIKFL 205
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y +S S YA G + + ++ VS A+I GY+Q G+ EAL+ +
Sbjct: 206 GKLDVYIGNSLVSFYARCGSLEDSVLAFKKINRKNVVSWNALICGYAQNGKGEEALDAYR 265
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G+ D +T++ +L + G +D G
Sbjct: 266 MMRATGLKPDNLTLLGLLFGCNHTGLVDEG 295
Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS AMI GYSQAG EA+ F ++ GV +E T VL + + G L G+S
Sbjct: 138 RNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNESTFPCVLTSVASAGTLGVGRSI 197
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +++ YA+
Sbjct: 198 HASAIKFLGKLDVYIGNSLVSFYAR 222
Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG---------- 129
RD +S A I ++ GR +AL F ++ + GV +E T VL +++
Sbjct: 4 RDVISATAAIGALTRGGRHRDALALFSRVLAGGVAPNEFTFGTVLRSATALRVRAPRVGV 63
Query: 130 ---PGALDFG-KSNIFLTTAIIEMYAKM 153
A G SN+F+ +A+++ YAKM
Sbjct: 64 QLHACAAKLGLCSNVFVGSALLDHYAKM 91
>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g09040, mitochondrial-like [Cucumis sativus]
Length = 1441
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISG+++ G EA+ F +L+ G+ ++ VL+A + G+ + A+ +
Sbjct: 280 MISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEG 339
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y S+ + YA ++ A R+ V AM+ G++Q G E +E F
Sbjct: 340 LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G DE T + +A + L+FG SN+F+ A+++MYAK
Sbjct: 400 CMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAK 457
Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+ISGY+Q +AL+ + + S + D+ VL A +G + +E+
Sbjct: 685 LISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTG 744
Query: 56 LDLSSYSLSSKTSRYAHSGRIR----------LARDPVSCKAMISGYSQAGRFNEALEPF 105
++ + SS YA G ++ + +S +MI G ++ G EALE F
Sbjct: 745 FNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIF 804
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E + DEVT + VL+A S G + G+
Sbjct: 805 KQMEQQSIIPDEVTFLGVLSACSHAGRVSEGR 836
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ G++Q G E +E F ++ G DE T + +A + +L + +
Sbjct: 381 MLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNK 440
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ YA SG ++ AR D VS A+I GY Q +EA F
Sbjct: 441 FASNLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFR 500
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT------------TAIIEMYAK 152
++ S GV DEV++ +++A + L G+ L +++I+MY K
Sbjct: 501 RMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVK 558
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY + G EA++ F +++ +G D++T+V V+ A G A++L ++
Sbjct: 214 LIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLVTVVNAYVALGRLADARKLFTQIP--- 270
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ V+ MISG+++ G EA+ F +L+ G+ ++
Sbjct: 271 ------------------NPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSL 312
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
VL+A + L++G N+++ +A++ MYAK
Sbjct: 313 GSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAK 356
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
++S Y G F ++ F + + V +E T +VL+A SG G + +
Sbjct: 113 VLSMYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ YA +R AR D VS A+I+GY + G EA++ F
Sbjct: 173 FGFRSFCQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFD 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+++ +G D++T+V V+ A G L
Sbjct: 233 RMQRVGHAPDQITLVTVVNAYVALGRL 259
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY+ G EA+ F +++ +G+ EVT +L G L +++ ++
Sbjct: 583 LIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKWG 641
Query: 57 --------DLSSYSLSSKTSRYAHS----GRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+S L + R+ S ++ + V A+ISGY+Q +AL+
Sbjct: 642 FLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQF 701
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIFLT---------TAIIEMYAK 152
+ + S + D+ VL A +G +L G+ S IF T +++I+MYAK
Sbjct: 702 YQHMRSDNILPDQAAFASVLRACAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDMYAK 761
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
+I YS +GR EA + F ++ D+VT +++A A L ++ + +
Sbjct: 917 LIGFYSASGRIREARKVFDEMPE----RDDVTWTTMVSAYRQVLDMDSANSLANQMPEKN 972
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
+ + Y G + LA +D +S MI+GYS+ R+ EA+ F K+
Sbjct: 973 EATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMME 1032
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G+ DEVTM V++A + G L+ GK ++++ +A+++MY+K
Sbjct: 1033 EGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSK 1086
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GYS+ R+ EA+ F K+ G+ DEVTM V++A + G + KE+ Q
Sbjct: 1010 MINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNG 1069
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L + + C ++I G + G EAL+ F
Sbjct: 1070 FVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFA 1129
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E V + VT V V A + G ++ G+
Sbjct: 1130 KMEMESVKPNTVTFVSVFTACTHAGLVEEGR 1160
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G + G EAL+ F K+E V + VT V V TA + G + + + +
Sbjct: 1111 IIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSM-IDD 1169
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
YS+ S Y M+ +S+AG EALE G +E
Sbjct: 1170 YSIVSNVEHYG---------------CMVHLFSKAGLIYEALELIGSME 1203
>gi|225456926|ref|XP_002278116.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g64310-like [Vitis vinifera]
Length = 560
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M +GY G +++ L+ F + S+G D TMV +++ + P G I L+
Sbjct: 182 MAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIHGFCLKSS 241
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D + + S+ S Y+ + A D V+ A+I+G S++G + +AL F
Sbjct: 242 FDCNDHVGSALVSMYSRCHCLNSAYGVFTILSQPDLVTWSALITGLSKSGDYEKALLFFR 301
Query: 107 KLESLGVHTDEVTMVVVLAASS-----GPGALDFG-------KSNIFLTTAIIEMYAK 152
K+ G D + + VLAAS GPG+ G +S + +++A+I+MY+K
Sbjct: 302 KMNMEGKRVDPILIASVLAASGQSAILGPGSEIHGYVLRHGLESEVMISSALIDMYSK 359
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK--- 137
D V AM +GY G +++ L+ F + S+G D TMV +++ + P L GK
Sbjct: 175 DLVLWNAMAAGYGYCGFWDKGLQLFSAMRSMGEQPDSYTMVGLISGLADPSLLGIGKGIH 234
Query: 138 ---------SNIFLTTAIIEMYAK 152
N + +A++ MY++
Sbjct: 235 GFCLKSSFDCNDHVGSALVSMYSR 258
>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
Length = 515
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-------SGPGAWILAKELQ 53
+I+ Y AG EA+ + + G+ D T V VLTA +G W A++ +
Sbjct: 12 LIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETGEAVWAAARQEE 71
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S + ++ Y G + AR D V+ AM+ GY+ G EAL+
Sbjct: 72 -GVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDL 130
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F ++ G D T+V L+A + GALD G+ N L TA+I+MYAK
Sbjct: 131 FFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAK 190
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G + +ALE F ++ V D VTM+V + A + G+ L K++ + E
Sbjct: 226 MISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFE 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y L++ + Y+++G + + RD +MIS Y+ G EA++ F
Sbjct: 286 FVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFI 345
Query: 107 KLESLGVHTDEVTMVVVLA 125
+++S GV DE T+V++L+
Sbjct: 346 RMQSEGVKKDERTVVIMLS 364
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ GY G + EA+ ++ + + TMV +L A G A EL++ +
Sbjct: 125 MVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEG------ASELRLGRGVHG 178
Query: 61 YSLSS---KTSRYAHSGRI-----------------RLARDPVSCKAMISGYSQAGRFNE 100
Y L + ++ + + I + R+ VS AMISGY G + +
Sbjct: 179 YCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFK 238
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
ALE F ++ V D VTM+V + A + G+L GK ++++ A++
Sbjct: 239 ALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLN 298
Query: 149 MYAK 152
MY+
Sbjct: 299 MYSN 302
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS----------SGPGAWILAK 50
MIS Y+ G EA++ F +++S GV DE T+V++L+ A ++
Sbjct: 327 MISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKS 386
Query: 51 ELQIELDLSSYSLSSKTS-RYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPF 105
++I+ L + LS T S + R D +S MI ++ +A E F
Sbjct: 387 GMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELF 446
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
++ + + T++ +LAA LDFG+S N L TA+ +MY
Sbjct: 447 ERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMY 503
Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 21/154 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI+ Y + + ++AL F ++ S + VT++ VL++ + A++ +
Sbjct: 530 MIASYVKNNQAHKALLLFHRMIS-EAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRG 588
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
+ LDLS ++ + YA G ++ A R+ +S AMI+GY GR ++A+
Sbjct: 589 FSLGLDLSL--ANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAM 646
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ G + VT V VL+A S G ++ G
Sbjct: 647 LAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMG 680
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ EAL F +L+ S DEVT+V L+A + GA WI +
Sbjct: 330 LISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKRE 389
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+ + +SS YA G + A RD AMI+G GR A++ F
Sbjct: 390 GIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLF 449
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V + VT VL A S G +D G+
Sbjct: 450 FEMQEAKVKPNSVTFTNVLCACSHAGLVDEGR 481
Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 88/210 (41%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILA----KE 51
MIS ++Q +ALE F K+E V + VTMV VL+A + G W+ + K
Sbjct: 198 MISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKG 257
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLAR---- 80
++++L L + +S + YA G AR
Sbjct: 258 IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFN 317
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
+ + +IS Y Q G+ EAL F +L+ S DEVT+V L+A + GA+D
Sbjct: 318 AMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAID 377
Query: 135 FGKS------------NIFLTTAIIEMYAK 152
G N L +++++MYAK
Sbjct: 378 LGGWIHVYIKREGIVLNCHLISSLVDMYAK 407
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
+A +L +DL Y L+S Y G + +A +D VS +MIS ++Q
Sbjct: 151 MAIKLSFGMDL--YILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCP 208
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAI 146
+ALE F K+E V + VTMV VL+A + L+FG K ++ L A+
Sbjct: 209 EDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAM 268
Query: 147 IEMYAK 152
++MY K
Sbjct: 269 LDMYTK 274
>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
+I+G+SQ G + A+ + ++ G+ +E T+ VL+A S GA +IL
Sbjct: 264 LINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNG 323
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++++ + + + YA G + A +D +S AMI G++ GRF++A+
Sbjct: 324 IKLDRAIGT----ALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAI 379
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F ++ G DEV + VL A +D G
Sbjct: 380 QCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
++ Y++ G+ A + F + D + +L + + AK++ + L
Sbjct: 167 LVDMYAKTGQLKHAFQVFEE------SPDRIKKESILIWNVLINGYCRAKDMHMATTLFR 220
Query: 59 -----SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+S S S+ Y SG + A+ + VS +I+G+SQ G + A+
Sbjct: 221 SMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ ++ G+ +E T+ VL+A S GAL G K + + TA+++MYAK
Sbjct: 281 YFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAK 340
>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 634
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y Q GRF E L + +++SLG+ DEVT+ VL+ G + + + S
Sbjct: 312 MISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASGRMIHCYIQ-DS 370
Query: 61 YS------LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+S L+S YA G++ + ++ +S +I + GR EA+ F
Sbjct: 371 FSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMHGRAQEAVMFF 430
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
+ S DE+T V +L+A S G L+ G+ +I+ +E YA M
Sbjct: 431 RAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEHYACM 484
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 82/209 (39%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MI G +QAG +EA F ++ GV D T V +L S G +LA
Sbjct: 180 MIGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASG 239
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLARD--- 81
+++L L + S +S A G + ARD
Sbjct: 240 SRVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFE 299
Query: 82 ------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-- 133
+S AMIS Y Q GRF E L + +++SLG+ DEVT+ VL+ G L
Sbjct: 300 QMPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLAS 359
Query: 134 ----------DFGKSNIFLTTAIIEMYAK 152
F + + ++I+MYA+
Sbjct: 360 GRMIHCYIQDSFSDPGVTVLNSLIDMYAR 388
>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 542
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MISG+ + GRF +ALE F +++ V D TMV +L A +S G WI ++
Sbjct: 229 MISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWIHKYIVRNR 288
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+L+S +++ Y G C +MI G + G A++ F
Sbjct: 289 FELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNGCEERAMDLFL 348
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+LE G+ D V+ + VL A + G
Sbjct: 349 ELERTGLEPDSVSFIGVLTACAHSG 373
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS +MISG+ + GRF +ALE F +++ V D TMV +L A + GA + G+
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 139 -----------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 281 HKYIVRNRFELNSIVITALIDMYCK 305
>gi|297605095|ref|NP_001056652.2| Os06g0125600 [Oryza sativa Japonica Group]
gi|255676676|dbj|BAF18566.2| Os06g0125600 [Oryza sativa Japonica Group]
Length = 377
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
R+ VS AM+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA++ G+
Sbjct: 182 RNVVSWTAMVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRK 241
Query: 139 ------------NIFLTTAIIEMYAK 152
N+++ A++EMY+K
Sbjct: 242 VEEYARGKGLLRNVYVANALLEMYSK 267
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 17/144 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
M+SGY+Q GR EA+E F ++ E GV +E+T+ VL A + GA L ++++
Sbjct: 190 MVSGYAQNGRHEEAVETFLEMWERAGVQPNELTVSSVLPACAAVGAMELGRKVEEYARGK 249
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
L + Y ++ Y+ G IR A +D S +MI ++ G + EAL
Sbjct: 250 GLLRNVYVANALLEMYSKCGSIRQAWQVFQGIGRQQDLCSWNSMIMAFAVHGLWREALAL 309
Query: 105 FGKLE-SLGVHTDEVTMVVVLAAS 127
F KL + V +VV L S
Sbjct: 310 FYKLRVRISCLNSLVFLVVTLIQS 333
>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
Length = 609
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI+GY+ + ++A+ F K+ G D T++ +L++ P G I A +Q+
Sbjct: 229 MIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVG 288
Query: 56 LDLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
D +++ S Y+ G I L + VS AMI+G ++ G +EA+ F
Sbjct: 289 CDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFS 348
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E++G D VT++ +++ GAL+ G K N+ + A+I++YAK
Sbjct: 349 AMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAK 406
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 14/163 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+G ++ G +EA+ F +E++G D VT++ +++ GA WI
Sbjct: 330 MIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANG 389
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFG 106
L + ++ YA G + AR+ P VS +I+G + G F EAL F
Sbjct: 390 LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFF 449
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEM 149
++ LG+ + +T + VL A + G L+ G L T + ++
Sbjct: 450 QMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKI 492
>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
Length = 841
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 14/139 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MISGY G + +ALE F ++ V D VTM+V + A + G+ L K++ + E
Sbjct: 233 MISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFE 292
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y L++ + Y+++G + + RD +MIS Y+ G EA++ F
Sbjct: 293 FVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAYAAFGCHEEAMDLFI 352
Query: 107 KLESLGVHTDEVTMVVVLA 125
+++S GV DE T+V++L+
Sbjct: 353 RMQSEGVKKDERTVVIMLS 371
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 38/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ GY G + EA+ ++ + + TMV +L A G A EL++ +
Sbjct: 132 MVYGYVGWGCYEEAMLLVREMGRENLRPNSRTMVALLLACEG------ASELRLGRGVHG 185
Query: 61 YSLSS---KTSRYAHSGRI-----------------RLARDPVSCKAMISGYSQAGRFNE 100
Y L + ++ + + I + R+ VS AMISGY G + +
Sbjct: 186 YCLRNGMFDSNPHVATALIGFYLRFDMRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFK 245
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
ALE F ++ V D VTM+V + A + G+L GK ++++ A++
Sbjct: 246 ALELFVQMLVDEVKFDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLN 305
Query: 149 MYAK 152
MY+
Sbjct: 306 MYSN 309
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS----------SGPGAWILAK 50
MIS Y+ G EA++ F +++S GV DE T+V++L+ A ++
Sbjct: 334 MISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKS 393
Query: 51 ELQIELDLSSYSLSSKTS-RYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPF 105
++I+ L + LS T S + R D +S MI ++ +A E F
Sbjct: 394 GMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELF 453
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
++ + + T++ +LAA LDFG+S N L TA+ +MY
Sbjct: 454 ERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMY 510
Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 45 AWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQA 95
A++ + + LDLS ++ + YA G ++ A R+ +S AMI+GY
Sbjct: 569 AYVTRRGFSLGLDLSL--ANAFITMYARCGSLQSAENIFKTLPKRNIISWNAMIAGYGMN 626
Query: 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
GR ++A+ F ++ G + VT V VL+A S G ++ G
Sbjct: 627 GRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMG 667
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 90/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSG----------------- 42
MISGY + RF +A+ F +++ G DE T+V L+A +
Sbjct: 269 MISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKE 328
Query: 43 -----------------PGAWILAKELQIELDLSSY-SLSSKTSRYAHSGRIRLARD--- 81
G +A+ + E+ + + +S S Y + G +R ARD
Sbjct: 329 LGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFD 388
Query: 82 --PVS----CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
PV AMI+GY Q F++A+ F +++ + D+ T+V +L + GAL+
Sbjct: 389 KSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQ 448
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK ++ + TA+IEMY+K
Sbjct: 449 GKWIHGYLDENRITMDVVVGTALIEMYSK 477
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q F++A+ F +++ + D+ T+V +LT + GA K + LD +
Sbjct: 401 MINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENR 460
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ Y+ G + + +D S ++I G + G+ +EAL F
Sbjct: 461 ITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFS 520
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E +G D++T + VL+A S G ++ G+
Sbjct: 521 EMERVGAKPDDITFIGVLSACSHGGLVEEGR 551
Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
M+ Y++ G + L F +L G+ D T VL A G + ++
Sbjct: 168 MVKIYAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTG 227
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+DL +Y +S Y + A RD VS MISGY + RF +A+ F
Sbjct: 228 MDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFR 287
Query: 107 KLESLGVHT-DEVTMVVVLAASSGPGALDFG-------KSNIFLTT----AIIEMYAK 152
+++ G DE T+V L+A + L+ G + + TT A+++MYAK
Sbjct: 288 EMQQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAK 345
>gi|242041975|ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-----AWILAKELQIEL 56
+S Q + + ++ F + L V DEVTM+ +++A S G A I+A LQ
Sbjct: 715 LSACVQCKQADMVVDYFKHMLFLNVRPDEVTMLALISACSQLGNADFAACIMAVILQKGF 774
Query: 57 DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
++ L++ ++ G I AR D V+ AMI+ YS G AL+ F
Sbjct: 775 SMNILVLNALIDTHSRCGSISFARELFDSSVEKDSVTWGAMINAYSMHGNGEAALDLFSM 834
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ GV D++T V +L+A S G ++ G++
Sbjct: 835 MIDSGVDPDDITFVSILSACSHNGLVEQGRT 865
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 81/181 (44%), Gaps = 29/181 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
M+SGYS G F EA+E +++ G+ + T+V ++ G + L
Sbjct: 211 MVSGYSVNGCFREAVETLQEMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGG 270
Query: 55 ELDLSSYSLSSKTSRYA-----HSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPF 105
+D S + S+ S YA S R+ +D VS +MIS Y Q + EA E F
Sbjct: 271 TIDDESLT-SALISMYAAFDDLSSSRLVFDLQPVKDLVSFNSMISAYMQHSNWKEAFEVF 329
Query: 106 GKLESLGVHTDEVTMVVVLAASSG-PGALDFGKS------------NIFLTTAIIEMYAK 152
+ GV + +T+V VL + S ++ G+S + + +A++ MY+K
Sbjct: 330 RLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKLGLAEQVSVVSALVSMYSK 389
Query: 153 M 153
+
Sbjct: 390 L 390
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS------GPGAWILAKELQI 54
MIS Y Q + EA E F + GV + +T+V VL + S G + +++
Sbjct: 312 MISAYMQHSNWKEAFEVFRLMHCAGVGPNLITLVSVLPSCSDLLFGINHGESVHGMIIKL 371
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPF 105
L +S+ S Y+ G++ + C +MISGY +N AL+ F
Sbjct: 372 GLAEQVSVVSALVSMYSKLGKLDSSSLLFCCFTEKNNILWNSMISGYLVNNEWNMALDAF 431
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ GV D T++ V++ L KS
Sbjct: 432 CKMQIAGVAPDATTVINVISGCRYTKDLHVAKS 464
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISGY +N AL+ F K++ GV D T++ V++ +AK + +
Sbjct: 414 MISGYLVNNEWNMALDAFCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNR 473
Query: 58 LSSYS--LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SY +++ + YA G I + R +S MISG+++ G +L F
Sbjct: 474 FESYQSVMNALLAMYADCGDISTSYTLFQKMEVRMLISWNTMISGFAEIGDSETSLTLFC 533
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V D VT++ ++++ S G+ S++ LT A+I MYA
Sbjct: 534 QMFHEEVWFDLVTLIGLISSLSVSEDAIVGESVHSLAIKSGCISDVSLTNALITMYAN 591
Score = 43.1 bits (100), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ +S G E L+ + L G +D T V+ A + L +++ + +
Sbjct: 112 VVRCFSDHGFHRELLDLYRGLCGFG--SDNFTFPPVIRACTAASCLQLGRQVHCRVLRTG 169
Query: 61 Y--SLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ +T+ YA +G+I ++R D +S AM+SGYS G F EA+E
Sbjct: 170 HGSNVGVQTALLDMYAKAGQIDVSRRVFDCMVLRDLISWNAMVSGYSVNGCFREAVETLQ 229
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-----------LTTAIIEMYA 151
+++ G+ + T+V ++ G G S + F LT+A+I MYA
Sbjct: 230 EMQQCGMSPNASTLVGIVGMCGSAGDRVAGDSLHAFALKGGTIDDESLTSALISMYA 286
>gi|302797857|ref|XP_002980689.1| hypothetical protein SELMODRAFT_32021 [Selaginella moellendorffii]
gi|300151695|gb|EFJ18340.1| hypothetical protein SELMODRAFT_32021 [Selaginella moellendorffii]
Length = 408
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 88/220 (40%), Gaps = 68/220 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+++ Y+Q G +A+ F ++ GV DE++ + V+ A + G + LAK + ++
Sbjct: 34 LMAAYAQNGHCKDAVHLFTIMDLEGVDIDEISFLTVIDACTNLGEFFLAKGIHSSIEDSA 93
Query: 58 ----LSSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGR----- 97
L S + +S + Y GR+ AR D VS A+I+ YSQ G
Sbjct: 94 LSSRLDSMAFTSIVNMYGKCGRVEDARRVFEGIPLLEHDVVSWTAIITVYSQNGEAKRAI 153
Query: 98 --------------------------------FN-EALEPFGKLESLGVHTDEVTMVVVL 124
FN EALE F KL G+ D+ + V L
Sbjct: 154 ELFRIMGKLSREDEKGDVILWNAMISAYALNGFNTEALELFWKLSHSGMKPDKASFVAAL 213
Query: 125 AASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
A S AL GK S++ + TA++ MY K
Sbjct: 214 DACSNSLALKQGKLLHSGILEHGYESDLVVGTALVNMYGK 253
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+ G EALE F KL G+ D+ + V L A S A K L +
Sbjct: 177 MISAYALNGFNTEALELFWKLSHSGMKPDKASFVAALDACSNSLALKQGKLLHSGILEHG 236
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ + Y G + A R+ ++ AM+ +++ G A +
Sbjct: 237 YESDLVVGTALVNMYGKCGSLDSALEFFQGMKKRNFITWNAMMGSFAENGHGMRACGVYR 296
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG----ALDFGKS 138
++E GV +D+VT + VL ASS G AL+F S
Sbjct: 297 EMEQEGVLSDQVTFLSVLFASSHAGLVTDALEFYHS 332
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 17/151 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
+I GY++ GR+ +ALE F +++ GV E+T+V VL A + G L K + +
Sbjct: 259 LIGGYTKLGRYVQALEVFREMQDSGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKG 318
Query: 58 --LSSYSLSSKTSRYAHSGRIRLARD--------PVSC-KAMISGYSQAGRFNEALEPFG 106
Y ++ YA G + LAR ++C AMI G+S G +ALE F
Sbjct: 319 VVADGYVGNALVDMYAKCGSLELARQLFESMSTRDITCWNAMIVGFSVHGYSRKALELF- 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V D VT + VL A S G +D G+
Sbjct: 378 --DAMRVEPDHVTFLGVLIACSHGGLVDEGR 406
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 86/174 (49%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y + GR +A + F + + + V+ ++ A G + L E+ S
Sbjct: 166 LVSMYGKLGRLGDARKVFDGMPA----RNAVSWNALVAAHGATGDLHGVELLSREMPERS 221
Query: 61 YSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +++ +R+A G + A RD VS ++I GY++ GR+ +ALE F +++
Sbjct: 222 VSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGYTKLGRYVQALEVFREMQD 281
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
GV E+T+V VL A + G L+ GK ++ ++ A+++MYAK
Sbjct: 282 SGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAK 335
>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g26782, mitochondrial-like [Glycine max]
Length = 555
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
+I+ Y+Q G EA FG + +S + V M L+ + G I + ++++L+ S
Sbjct: 159 VIAEYAQNGLSAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKCIHHQVIKMDLEDS 218
Query: 60 SYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFGKLES 110
+ +S Y R+ +AR C AM++GY GR EA+E F K+
Sbjct: 219 VFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIR 278
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG 136
GV + +T V VLAA S G L G
Sbjct: 279 SGVKPNYITFVSVLAACSHAGMLKEG 304
>gi|297738569|emb|CBI27814.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I GY+ AG EAL + + G+ D T V+ + + A KE+ +
Sbjct: 99 LIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIVKHG 158
Query: 57 -DLSSYSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
D + SS + Y+ SG + R+ VS A+I+GY Q F E L F
Sbjct: 159 FDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFR 218
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G + VT+V VL A +G L+ GK ++ LT A+I +Y K
Sbjct: 219 EMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGK 276
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I+GY Q F E L F ++ G + VT+V VL A +G G I +++
Sbjct: 200 VIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG 259
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D ++ + Y G + AR + VS AMI+ Y Q A++ F
Sbjct: 260 VDPDVSLTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFR 319
Query: 107 KLESLGVHTDEVTMVVVLAA 126
++++ V D +TMV V++A
Sbjct: 320 RMQAEKVDFDYITMVSVISA 339
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW-----ILAKELQIE 55
MI G SQAG EA+ F ++ GV +E T VLT+ + GA + A ++
Sbjct: 144 MIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVLTSVANAGALGVGRSVHASAIKFL 203
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y +S S YA G + + ++ VS A+I GY+Q G+ EAL+ +
Sbjct: 204 GKLDVYIGNSLVSFYARCGSLEDSVLAFKKMNRKNVVSWNALICGYAQNGKGEEALDAYR 263
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
+ + G+ D VT++ +L + G +D G + +F TT +
Sbjct: 264 MMRATGLKPDNVTLLGLLFGCNHAGLVDEGYA-LFKTTEM 302
Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 80/208 (38%), Gaps = 57/208 (27%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL---TASSGPGAWILAKELQIELDL 58
I ++ GR +AL F ++ + GV +E T VL TA P A + +L L
Sbjct: 13 IGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAGVQLHACAAKLGL 72
Query: 59 SS--YSLSSKTSRYAHSGRIRLA------------------------------------- 79
S + S+ YA G +R A
Sbjct: 73 CSNVFVGSALLDHYAKMGAMREAHGVLDDTREPNVVSYTALIAGLLKNGMFDEADRLFRR 132
Query: 80 ---RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
R+ VS AMI G SQAG EA+ F ++ GV +E T VL + + GAL G
Sbjct: 133 MPERNVVSWNAMIGGCSQAGLSEEAVNLFLEMCREGVTPNESTFPCVLTSVANAGALGVG 192
Query: 137 KS------------NIFLTTAIIEMYAK 152
+S ++++ +++ YA+
Sbjct: 193 RSVHASAIKFLGKLDVYIGNSLVSFYAR 220
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS A I ++ GR +AL F ++ + GV +E T VL +++ A G
Sbjct: 4 RDVVSATAAIGALTRRGRHRDALALFSQVLADGVAPNEFTFGTVLRSATALRAPRAGVQL 63
Query: 137 ---------KSNIFLTTAIIEMYAKM 153
SN+F+ +A+++ YAKM
Sbjct: 64 HACAAKLGLCSNVFVGSALLDHYAKM 89
>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
Length = 700
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKL----ESLGVHTDEVTMVVVLTASSGPGAWILAK-----E 51
MI+GYSQ G EA F + E+ + + T+ VL A G G + K
Sbjct: 113 MIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYA 172
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++I D + S Y G + +A +D V+ MI+GY+Q EA+
Sbjct: 173 VKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAI 232
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSG-----------PGALDFGKS-NIFLTTAIIEMY 150
E F ++E G ++ T VL AS+ L G S ++F+ TA+++MY
Sbjct: 233 ELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMY 292
Query: 151 AKM 153
+K
Sbjct: 293 SKF 295
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI+GY+Q EA+E F ++E G ++ T VL AS S G AK L++
Sbjct: 218 MITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSAVGRCFHAKVLKLG 277
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ Y+ I R+ VS A+I+GYS G++ EAL +
Sbjct: 278 CSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYS 337
Query: 107 KLESLGVHTDEVTMVVVLAASS-----GPGA------LDFG-KSNIFLTTAIIEMYAK 152
+L+S G+ D T V + ++ S GA + FG S++ + +I+ Y+K
Sbjct: 338 QLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSK 395
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+ISG++Q G +AL F K+ TDE + V+ A S G + A ++
Sbjct: 420 IISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSG 479
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + Y S+ Y+ G + A ++ VS +MI+GY+Q G EAL F
Sbjct: 480 LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQ 539
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ S G+ VT V +L A S G ++ G++
Sbjct: 540 EMTSSGILPTAVTFVGILFACSHAGLVEEGRN 571
Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 38/185 (20%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA---SSGPG------AWILAKEL 52
I+ ++ G ++AL F ++ G+ + +T ++A S+ P IL K
Sbjct: 13 ITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGF 72
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+L +SS S Y+ RI+ AR D VS +MI+GYSQ G EA
Sbjct: 73 SNQLFVSS----GLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACG 128
Query: 104 PFGKL----ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAII 147
F + E+ + + T+ VL A G G GK S++F++ + +
Sbjct: 129 LFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTV 188
Query: 148 EMYAK 152
MY K
Sbjct: 189 YMYCK 193
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 60/195 (30%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GYS G++ EAL + +L+S G+ D T V + ++ S S
Sbjct: 319 LITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCS-----------------VS 361
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP---------------- 104
+++ + HS + L D ++++ YS+ G + ALE
Sbjct: 362 STVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGII 421
Query: 105 ---------------FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------ 137
F K+ TDE + V+ A S A++ G+
Sbjct: 422 SGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKSGLD 481
Query: 138 SNIFLTTAIIEMYAK 152
I++ +A+I+MY+K
Sbjct: 482 CTIYVGSAVIDMYSK 496
>gi|357123975|ref|XP_003563682.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Brachypodium distachyon]
Length = 527
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 85/208 (40%), Gaps = 56/208 (26%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI Y + GR+ A+ ++E G+ D+VT+V +T S G L + + +D
Sbjct: 118 MIRCYVRCGRYTAAIALAEEMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVF 177
Query: 58 -----------------------------LSSYSLSSKT---SRYAHSGRIRLAR----- 80
+ S ++ S T S YA +G++ AR
Sbjct: 178 GFSLPVANALLDMYMKNGCLEEAVKLFEQMPSRNIISWTILVSGYAFAGQLDKARVLFYQ 237
Query: 81 ----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
D + AMI+ Q G F EAL F +++ V D T+V +L + GALD G
Sbjct: 238 CSEKDLIMWTAMINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQG 297
Query: 137 ------------KSNIFLTTAIIEMYAK 152
K + L TA+I+MYAK
Sbjct: 298 EWIHQFAVDRKMKVDAVLGTALIDMYAK 325
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+ Q G F EAL F +++ V D T+V +LT + GA WI + +
Sbjct: 249 MINACVQHGCFEEALSLFREMQMQRVEPDRFTIVTLLTCCANLGALDQGEWIHQFAVDRK 308
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + ++ YA G ++ + RD + ++I G + G+ ALE F
Sbjct: 309 MKVDAVLGTALIDMYAKCGHVKKSMEVFEQMQGRDTTAWTSIICGLATNGQAGRALELFE 368
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN 139
+E V D +T + VL+A G +D G+
Sbjct: 369 DMERSKVKPDSITFIGVLSACCHGGLVDEGRKQ 401
Score = 38.5 bits (88), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 72/177 (40%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
+I ++ G F + + L G+ D T VL A S G A ++
Sbjct: 17 LIRTLARRGSFARVMAVYYDLRGRGLVADSFTYPFVLRAIGVLKLSVEGRKAHAAAMKTG 76
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEALEPFG 106
+Y+ SS Y GR +AR D + +A MI Y + GR+ A+
Sbjct: 77 FWWDAYTASSLMDMYTLLGRADVARKLFDEMPHRALVVWNMMIRCYVRCGRYTAAIALAE 136
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIF-----LTTAIIEMYAK 152
++E G+ D+VT+V + S G L G+ +F + A+++MY K
Sbjct: 137 EMERSGLTPDKVTLVTSVTVCSRAGDLSLGRRIHAYMDGVFGFSLPVANALLDMYMK 193
>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
Length = 1161
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y+Q G +A + F ++++ G ++T + +LTA P K++ ++ +
Sbjct: 154 LISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAG 213
Query: 61 YSLSSK----------------TSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
Y + ++R SG R RD VS M+ Y+Q E +
Sbjct: 214 YQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYR--RDVVSYNTMLGLYAQKAYVEECIGL 271
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
FG++ S G+ D+VT + +L A + P LD GK S+I + TA+ M+ +
Sbjct: 272 FGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVR 331
Score = 56.2 bits (134), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 84/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY++ EA++ + +++S GV VT + +L+A + A+ K + ++ S
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516
Query: 61 -----YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ + Y G I ARD +S +MI+G++Q G + A + F
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ G+ D++T VL P AL+ G+ ++ L A+I MY +
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIR 634
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ +Q G + EA E + ++ S GV + T + VL A S A + A EL I +S
Sbjct: 356 LIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA-LGAGEL-IHSHISE 413
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
SS S YA G + AR D +S A+I+GY++ EA++
Sbjct: 414 VGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKL 473
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ +++S GV VT + +L+A + A G KSN L A++ MY +
Sbjct: 474 YKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRR 533
Score = 47.0 bits (110), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ G +A E F ++++ G + T +L A K++ + S
Sbjct: 659 MIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSG 718
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y L + S Y+ SG + AR D +S MI+GY+Q G AL+
Sbjct: 719 YELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAY 778
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ GV ++ + V +L A S AL+ GK ++ + A+I MYAK
Sbjct: 779 QMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAK 836
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q G AL+ +++ GV ++ + V +L A S A K + E+
Sbjct: 760 MIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRK 819
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S YA G + A ++ V+ AMI+ Y+Q G ++AL+ F
Sbjct: 820 MQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFN 879
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++ G+ D T +L+A + G
Sbjct: 880 CMDKEGIKPDGSTFTSILSACNHSG 904
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 17/146 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
MISGYSQ G + +ALE F K+E V +EVT+ V +A + GA + + ++
Sbjct: 113 MISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDN 172
Query: 56 -LDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNEALEP 104
L + Y ++ YA G+I AR + S +M+ G + GR NEAL+
Sbjct: 173 GLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQL 232
Query: 105 FGKLESLGVHTDEVTMV-VVLAASSG 129
+ ++ G+ D+VT V ++LA + G
Sbjct: 233 YDQMLGEGIEPDDVTFVGLILACTHG 258
Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 23/151 (15%)
Query: 25 GVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY-SLSSKTSRYAHSG--------- 74
G D + ++ + G +LA+++ E+ + + +S + Y+ SG
Sbjct: 40 GFDFDVYALTALVDMYAKLGVLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELF 99
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGAL 133
++ +R VS MISGYSQ G + +ALE F K+E V +EVT+ V +A + GAL
Sbjct: 100 KLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGAL 159
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
+ G+ N++++ ++EMYA+
Sbjct: 160 EVGERIESYARDNGLMKNLYVSNTLLEMYAR 190
>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
Length = 565
Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q+G E+L F ++E+ G+ D TMV V++A+S G+ W+ + +
Sbjct: 247 MINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKR 306
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + L++ +A G + A D A+ISG + G AL+ F
Sbjct: 307 IERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFE 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++++ V D +T V VL A S G +D G
Sbjct: 367 RMQAQSVWPDPITFVGVLTACSHAGLVDKG 396
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLARD-----P----VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y G +R AR+ P V+ AMI+GY+Q+G E+L F ++E+ G+ D TM
Sbjct: 220 YCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATM 279
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
V V++A+S G+ + + N + TA+++M+AK
Sbjct: 280 VGVISAASQIGSTELAGWVGSYVDKKRIERNDKVLTALVDMHAK 323
>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
Length = 615
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MI+ + Q +EAL F ++ G+ D +T V VL A + GA L K L +
Sbjct: 214 MIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAG 273
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
LD S ++ + Y G ARD VS AM++ Y Q GR EAL F
Sbjct: 274 LDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFD 333
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++ GV +++T V +L S G
Sbjct: 334 SMDLEGVRPNDITFVTILYCCSHSG 358
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+++G+ Q+GR EA++ F ++ G D V ++ + + A +E+
Sbjct: 113 LMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCG 172
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+D + ++ + Y G I A ++ +S MI+ + Q +EAL F
Sbjct: 173 MDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFK 232
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D +T V VL A + GAL+ GK ++I + ++ MY K
Sbjct: 233 LMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGK 290
>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 878
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 27/177 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MIS ++++ F AL F ++ + G+H +E T V+ + +G G + L+
Sbjct: 94 MISAFTKSQEFASALSLFEEMMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTG 153
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S SS T Y+ G+++ AR D +S MIS A +++EAL +
Sbjct: 154 FEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYS 213
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYA 151
++ GV +E T V +L ASS G L+FGK+ N+ L T+++ Y+
Sbjct: 214 EMIKAGVPPNEFTFVKLLGASSFLG-LEFGKTIHSSIIVRGIPLNVVLKTSLVYFYS 269
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ +++ G+ AL + G+ D++++ ++AS+ GA K L S
Sbjct: 498 LVTRFNELGKHEMALSVINHMYGDGIRMDQLSLPGFISASANLGAHETGKHLHCYSVKSG 557
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S L+S Y+ G + A+ D VS ++SG + GR + AL F
Sbjct: 558 FSGAVSVLNSLVDMYSKCGSLEDAKKVFEEIAMPDVVSWNGLVSGLASIGRISSALSAFE 617
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
++ G D VT +++L+A S
Sbjct: 618 EMRMKGTEPDSVTFLILLSACS 639
Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 19/153 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG--------AWILAKEL 52
MIS A +++EAL + ++ GV +E T V +L ASS G + I+ + +
Sbjct: 195 MISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLLGASSFLGLEFGKTIHSSIIVRGI 254
Query: 53 QIELDL--------SSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+ + L S +S+ R +S +D +++SG+ + R EA+
Sbjct: 255 PLNVVLKTSLVYFYSHFSIMEDAVRVLNSTG---EQDVFLWTSVVSGFVRNLRAKEAVGT 311
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ SLG+H + T +L+ S +LD GK
Sbjct: 312 FLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGK 344
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY Q G +++ALE F +++ V DEV + +L+A + GA + L + +D
Sbjct: 270 LIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTLLSACARLGALDQGRWLHMYIDKHG 329
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S Y+ GRI +A + +MI G + +A+E F
Sbjct: 330 IKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKVFVWSSMIGGLAMHSFGEKAIELFA 389
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K+ G+ E+T + +LAA + G +D G
Sbjct: 390 KMIECGIEPSEITYINILAACTHSGLVDVG 419
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY ++G +EA F ++ D V+ ++L + G
Sbjct: 208 LINGYVKSGDLDEARRLFDEMPE----RDVVSWTIMLVGYADAGF--------------- 248
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
LS + + + R+ VS A+I GY Q G +++ALE F +++ V DEV +
Sbjct: 249 --LSEASCLFDEMPK----RNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIV 302
Query: 121 VVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+L+A + GALD G K + L+TA+I+MY+K
Sbjct: 303 TTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSK 346
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY++ G+ NE+ F ++ G D+V MV ++ A + GA A+ + +
Sbjct: 173 MIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARR 232
Query: 61 YSL-----SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
YSL ++ YA G I +R+ +S AMI Y G+ EALE F
Sbjct: 233 YSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFH 292
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G+ + +T + +L A S G +D G
Sbjct: 293 MMLNSGIIPNRITFISLLYACSHAGLVDDG 322
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI G+ + G + + F +L G D ++ V+ A G I + L+
Sbjct: 72 MIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNG 131
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L L ++ S+ YA G I A+ D V+ MI+GY++ G+ NE+ F
Sbjct: 132 LHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFD 191
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G D+V MV ++ A + GA++ + ++ L TA+I+MYAK
Sbjct: 192 QMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAK 249
>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 700
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GYSQAG EA + F + G + + +L+ S G + A
Sbjct: 376 IIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFG 435
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S S+ + Y+ G I+ A D VS AMI+GY++ G+ EA++ F
Sbjct: 436 LEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDDIVSLTAMINGYAEHGKSKEAIDLFE 495
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K +G D VT + VL A + G LD G
Sbjct: 496 KSLKVGFSPDSVTFISVLTACTHSGQLDLG 525
Score = 42.0 bits (97), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---LD 57
+I Y++ G +A+E F K+ + V +E T + +A + + ++L L
Sbjct: 275 LIVAYNRIGHEEKAVETFIKMRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLG 334
Query: 58 LS-SYSLSSKTSR-YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S S+S+ + Y+ G++ A RD +S +I GYSQAG EA + F
Sbjct: 335 LNDSLSVSNSMMKMYSTCGKLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFS 394
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ G + + +L+ S L+ G+ N + + +I MY+K
Sbjct: 395 WMRQSGPKPTDFALASLLSVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSK 452
Score = 38.5 bits (88), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGP-----GAWILAKELQ 53
+I GY A +EA+ F + + V D + VVL A G + A ++
Sbjct: 71 IIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQSSNIAYGESLHAYAVK 130
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S + SS Y G+I + R+ V+ A+I+G AGR+ E L
Sbjct: 131 TSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTY 190
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ S +D T + L A +G + +GK
Sbjct: 191 FSEMSSSEELSDTFTFAIALKACAGLRQVKYGK 223
>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
Length = 802
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M+SGY G +AL+ F K+ S V + T + A GA K+L Q+
Sbjct: 401 MVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLG 460
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ S+ + ++ + YA G ++ A D VS AMIS Q G EALE F
Sbjct: 461 FEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFD 520
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + G++ D ++ + VL A + G +D G
Sbjct: 521 RMVAEGIYPDRISFLTVLTACNHSGLVDEG 550
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY +G EA E F ++ V DE T VL+A + G + K + ++
Sbjct: 265 MISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324
Query: 61 YSL---------SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ ++ + Y+ G I +AR D VS ++SGY ++ ++A+
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAV 384
Query: 103 EPFGKL 108
E F ++
Sbjct: 385 EVFEEM 390
Score = 35.4 bits (80), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 27/53 (50%)
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
AMISGY +G EA E F ++ V DE T VL+A + G GKS
Sbjct: 263 NAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKS 315
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLES--LGVHTDEVTMVVVLTASSGPGAWILAKELQI---- 54
MI GY+Q G N+AL+ F ++ S V + T+ +L A + A + K++
Sbjct: 481 MIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTR 540
Query: 55 --ELDLSSYSLSSK-TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
E + S Y +++ Y+ G + AR+ VS +M+SGY GR EAL
Sbjct: 541 HHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEAL 600
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F K++ G D+++ +V+L A S G +D G
Sbjct: 601 DIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 48/198 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q G EAL+ F ++ G + VT++ +L+A + GA L++ ++I
Sbjct: 366 VIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGA--LSQGMEIHAYSLK 423
Query: 56 -------------------------LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMIS 90
+D+ S S K +R R R+ V+ MI
Sbjct: 424 KCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIG 483
Query: 91 GYSQAGRFNEALEPFGKLES--LGVHTDEVTMVVVLAASSGPGALDFGK----------- 137
GY+Q G N+AL+ F ++ S V + T+ +L A + AL GK
Sbjct: 484 GYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHE 543
Query: 138 ---SNIFLTTAIIEMYAK 152
S F+ +I+MY+K
Sbjct: 544 YEPSVYFVANCLIDMYSK 561
Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y++ G N+A++ F +E D V+ ++T + G + A EL
Sbjct: 300 LIDTYAKCGSMNDAVKVFNVME----FKDVVSWNAMVTGYTQSGNFGAAFEL-------- 347
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + + + D ++ A+I+GY+Q G EAL+ F ++ G + VT+
Sbjct: 348 ---------FENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTI 398
Query: 121 VVVLAASSGPGALDFG 136
+ +L+A + GAL G
Sbjct: 399 ISLLSACASLGALSQG 414
>gi|125524780|gb|EAY72894.1| hypothetical protein OsI_00769 [Oryza sativa Indica Group]
Length = 569
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I G++ +G + ALE F +++ + + VTM VL+A A L +EL + E
Sbjct: 257 VIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAE 316
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD S + + YA G++ AR D +S +M++GY G +EAL F
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V D VT V VL+A G + G+
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGR 407
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
++S ++++G+ + L+ FG+++ G + +M V L+A G LAK I
Sbjct: 116 LLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVV 175
Query: 56 ---LDLSSYSLSSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALE 103
+ + +S Y G R A++ V+ +I+ Y+ AG +EAL+
Sbjct: 176 KGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAAGLCDEALD 235
Query: 104 PFGKLESLG 112
++E +G
Sbjct: 236 VLAQMEQIG 244
>gi|302793933|ref|XP_002978731.1| hypothetical protein SELMODRAFT_109195 [Selaginella moellendorffii]
gi|300153540|gb|EFJ20178.1| hypothetical protein SELMODRAFT_109195 [Selaginella moellendorffii]
Length = 348
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+GY+Q G A+E F +L+ G+H ++VT + V+ A SG G K L +EL
Sbjct: 1 MIAGYAQNGHCKLAVELFWRLDQEGIHANQVTFISVVDACSGLGDLRQGKGLHARILELG 60
Query: 58 LSSYSLSSKTSRYAHSGRI------------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
S+ ++ K + G++ R ++ S AMI+ Y++ G ++A +
Sbjct: 61 FDSH-ITVKNTLLNLHGKLGSLEDAEKVFHSREEKNVASWNAMIAAYTRHGHGSKAAQTL 119
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G DEVT+ + A G L G+ ++ + ++I MY++
Sbjct: 120 ELMDFEGTKPDEVTLSGIFDACGDMGDLASGRKLHIRIRGGELEQDVTVANSLINMYSR 178
>gi|224083626|ref|XP_002307076.1| predicted protein [Populus trichocarpa]
gi|222856525|gb|EEE94072.1| predicted protein [Populus trichocarpa]
Length = 733
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 18/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
+IS Y+ +G + EA+ F ++ S ++ + T+V+VL+A G KE
Sbjct: 462 LISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGG 521
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
EL++S + + YA G++ +R D +S MISGY G N A+E
Sbjct: 522 FELNVSLGT--ALVDMYAKCGQLEQSRELFNSMKEKDVISWNVMISGYGLHGDANSAMEV 579
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++E V + +T + +L+A + G +D GK
Sbjct: 580 FQQMEQSNVKPNAITFLSLLSACTHAGYVDEGK 612
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 12/88 (13%)
Query: 77 RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
R RD V+ +IS Y+ +G + EA+ F ++ S ++ + T+V+VL+A +L+ G
Sbjct: 451 RTQRDVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKG 510
Query: 137 KS------------NIFLTTAIIEMYAK 152
K N+ L TA+++MYAK
Sbjct: 511 KMVHQYIKEGGFELNVSLGTALVDMYAK 538
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
+I GY +AG ++EA+ F K++S G +EVTMV V A + GA +I+
Sbjct: 217 LIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNG 276
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRI--------RLAR---DPVSCKAMISGYSQAGRFNE 100
L + L L +S YA G I R+++ D + A+I G + G E
Sbjct: 277 LPLTLVLQ----TSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEE 332
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+L+ F +++ +G+ DEVT + +LAA + G
Sbjct: 333 SLKLFKEMQIVGICPDEVTYLCLLAACAHGG 363
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S YA G + +A +D S ++I GY +AG ++EA+ F K++S G
Sbjct: 182 SWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAG 241
Query: 113 VHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+EVTMV V A + GAL+ G+ + L T++++MYAK
Sbjct: 242 PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLTLVLQTSLVDMYAK 293
>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
lyrata]
Length = 749
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 30/158 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++ YSQ+ + +AL F ++ +G ++VT VL + A +E
Sbjct: 439 LVTAYSQSSEWEDALSVFSQMREMGFQPNQVTFSGVLASC--------ASLCSLEYGQQV 490
Query: 61 YSLSSKT-------------SRYAHSGRIRLA-------RDP--VSCKAMISGYSQAGRF 98
+SL+ KT YA G +R A +DP +S AMISGY+Q G
Sbjct: 491 HSLTCKTGFARDKCVESVLIDMYAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMA 550
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ALE F K+E + + + T + +L A S G +D G
Sbjct: 551 KDALELFRKMELVLPNPNSATFLCLLFACSHGGLVDEG 588
Score = 43.5 bits (101), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 33/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MISG++ +G EA+ F ++ + D T L + + + K+L
Sbjct: 339 MISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWKSG 398
Query: 54 -IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
I + L + + + YA G + R + +S +++ YSQ+ + +AL
Sbjct: 399 SIGVSLCNALMDA----YAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALS 454
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT------------TAIIEMYA 151
F ++ +G ++VT VLA+ + +L++G+ LT + +I+MYA
Sbjct: 455 VFSQMREMGFQPNQVTFSGVLASCASLCSLEYGQQVHSLTCKTGFARDKCVESVLIDMYA 514
Query: 152 K 152
K
Sbjct: 515 K 515
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ G ++ G + + ++ F ++ + DE + + A G + ++ + + ++
Sbjct: 135 LMVGATENGFYRDGIDYFVEILGCDIVPDEYALSAAIQACIGVDSIVVGEMVHAQVITRG 194
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+S +S YA GRI + R+ VS AMISG+ G + EA F
Sbjct: 195 FSSRTFVNTSLLGMYAKLGRIGDSCKVFNSLENRNQVSWNAMISGFVSNGLYAEAYNSFL 254
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + + + V A G ++ G+ SNI + TA+I+M+AK
Sbjct: 255 RMLGEEIRPNVACFISVSKAIGQLGDVEKGRYINRIAFEIGMQSNIHVGTALIDMFAK 312
>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
Length = 674
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M++ + Q E L +++ G D VT+ VL+ASS G + K+ I
Sbjct: 259 MVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG 318
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L S YA SGR+ +A RD V+ AMI+GY+Q+G+ +A+ F
Sbjct: 319 IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVF 378
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDF-GK------------SNIFLTTAIIEMYAK 152
+ G+ VT+ VL A G + GK +N+F+ TA+I+MY+K
Sbjct: 379 RAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSK 438
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
MI+GY Q G+F+EA++ F K L S V D VT + LTA+S L ++L
Sbjct: 156 MITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKG 215
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L ++ Y+ G ++ A +D V+ M++ + Q E L
Sbjct: 216 MHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLL 275
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G D VT+ VL+ASS G L GK L + +I+MYAK
Sbjct: 276 VYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAK 334
Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWI-----LAKELQIELDL 58
Y + GR EALE F ++ G V+ V + A+ + +W L + +E
Sbjct: 58 YVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYIN 117
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK-L 108
+ +SS ++ G ++ AR D + K MI+GY Q G+F+EA++ F K L
Sbjct: 118 DLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKIL 177
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
S V D VT + L A+S + G+ + L A++ MY++
Sbjct: 178 GSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSR 234
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 87/210 (41%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAW----ILAKE 51
MISG+ Q G EAL+ F +++ + VTMV VL+A + G W I
Sbjct: 203 MISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNG 262
Query: 52 LQIELDLSS---------------------------YSLSSKTSRYAHSGRIRLAR---- 80
+ I L LS+ S ++ YA G AR
Sbjct: 263 IDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFD 322
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
D + A+IS Y Q G+ EAL F +L+ + +EVT+ LAA + GA+D
Sbjct: 323 VMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMD 382
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G K N +TT++I+MY+K
Sbjct: 383 LGGWIHVYIKKQGIKLNFHITTSLIDMYSK 412
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ EAL F +L+ + +EVT+ L A + GA WI +
Sbjct: 335 LISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ 394
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L+ + +S Y+ G + A RD AMI+G + G A++ F
Sbjct: 395 GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLF 454
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ V + VT +L A S G +D G+
Sbjct: 455 SKMQETKVKPNAVTFTNLLCACSHSGLVDEGR 486
Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D VS +MISG+ Q G EAL+ F +++ + VTMV VL+A + L+FG+
Sbjct: 195 KDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA 254
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ L+ A+++MY K
Sbjct: 255 CDYIERNGIDINLILSNAMLDMYVK 279
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI+GY+Q G + E +++ G D VT++ +L A G + A+ +++
Sbjct: 467 MIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLG 526
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + +S Y+ G++ AR D V+ AM++GY Q G EA++ F
Sbjct: 527 LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFK 586
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ V +E+T+ V++A S G + G+
Sbjct: 587 RMLKERVSPNEITLTAVISACSRAGLVQEGR 617
Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I +Q + NEA E + ++ G+ + VT V +L + + P A L + +I +S
Sbjct: 229 IIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA--LNRGRRIHSHISE 286
Query: 61 YSLSSK-------TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAG-----RFN 99
L + + Y ++ AR D +S AMI+GY+Q+G +
Sbjct: 287 RGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESID 346
Query: 100 EALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAII 147
E + ++ GV ++VT + +L A + GAL+ G+ + L TAI
Sbjct: 347 EVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIF 406
Query: 148 EMYAK 152
MYAK
Sbjct: 407 NMYAK 411
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 62/214 (28%)
Query: 1 MISGYSQAG-----RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE 55
MI+GY+Q+G +E + ++ GV ++VT + +L A + GA +++ E
Sbjct: 330 MIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAE 389
Query: 56 LDLSSYSLSSKT-----SRYAHSGRIRLA------------------------------- 79
L + L + YA G I A
Sbjct: 390 LSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSA 449
Query: 80 ---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130
R+ VS MI+GY+Q G + E +++ G D VT++ +L A
Sbjct: 450 EKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGAL 509
Query: 131 GALDFGK------------SNIFLTTAIIEMYAK 152
L+ GK S+ + T++I MY+K
Sbjct: 510 AGLERGKLVHAEAVKLGLESDTVVATSLIGMYSK 543
>gi|56201767|dbj|BAD73217.1| hypothetical protein [Oryza sativa Japonica Group]
gi|56201874|dbj|BAD73324.1| hypothetical protein [Oryza sativa Japonica Group]
gi|125569384|gb|EAZ10899.1| hypothetical protein OsJ_00742 [Oryza sativa Japonica Group]
Length = 569
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I G++ +G + ALE F +++ + + VTM VL+A A L +EL + E
Sbjct: 257 VIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAE 316
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD S + + YA G++ AR D +S +M++GY G +EAL F
Sbjct: 317 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 376
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V D VT V VL+A G + G+
Sbjct: 377 DMAGATVEPDGVTFVAVLSACGHAGRVTEGR 407
>gi|218190710|gb|EEC73137.1| hypothetical protein OsI_07160 [Oryza sativa Indica Group]
Length = 603
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
+ SGY G + E + F ++ +G + D V +V +++A+ G A I+
Sbjct: 226 LASGYLLRGDYLEVFDLFNRMRGVGQNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLG 285
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ E DL++ S + YA G + AR + V +MISGY + G NEAL
Sbjct: 286 FECEEDLAA----SLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEAL 341
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F + + +E T+ VL+A + G+ + GK S + T +I+MY
Sbjct: 342 VMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMY 401
Query: 151 AK 152
+K
Sbjct: 402 SK 403
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G NEAL F + + +E T+ VL+A + G+ L K+++ + +
Sbjct: 327 MISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATG 386
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + Y+ G I LAR D AMI+GY+ G +EAL F
Sbjct: 387 LHSEPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFK 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++++ G D + VL A + G +D G
Sbjct: 447 EMKNKGFQPDGIAFTHVLTACNYSGLVDEG 476
>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
Length = 496
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MI GY + G A F ++ V D ++ ++ + G AK L E+ + +
Sbjct: 71 MIDGYVKRGEMGHARMVFDRM----VCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERN 126
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S + G + A RD VS +M++ Y+Q G+ NEAL F ++ +
Sbjct: 127 LVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXA 186
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+GV E T+V +L+A + GALD G + N + TA+++MYAK
Sbjct: 187 VGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAK 240
>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g04860-like [Glycine max]
Length = 714
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MISG QAG+ ++A+E F ++ G D +T+ +L+ G +IL
Sbjct: 412 MISGCVQAGKSSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNN 471
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-------RDP--VSCKAMISGYSQAGRFNEAL 102
+++E ++ ++ Y GR+ A DP V+ ++ISGYS G ++A
Sbjct: 472 VKVE----DFTGTALIDMYTKCGRLDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAF 527
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPG 131
F KL+ G+ D++T + VLAA + G
Sbjct: 528 GCFSKLQEQGLEPDKITFLGVLAACTHGG 556
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+IS YS+ G A+E F + L + D V ++ VL S P + + ++
Sbjct: 311 IISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKNG 370
Query: 58 LSSYSLSSK--TSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
L++ L + S Y+ I R + ++ +MISG QAG+ ++A+E F
Sbjct: 371 LTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGKSSDAMELFC 430
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYAK 152
++ G D +T+ +L+ G L G ++N+ F TA+I+MY K
Sbjct: 431 QMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTK 488
Score = 42.4 bits (98), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 10/145 (6%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI Y Q G ++A+ F ++ G VTM+ +++A++ P + ++ +
Sbjct: 216 MIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAVPET-VHCYIIKCGFTGDA 274
Query: 61 YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
++S YA G +A +D +S +IS YS+ G A+E F + L
Sbjct: 275 SVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTGIISSYSEKGEVESAVECFIQTLKL 334
Query: 112 GVHTDEVTMVVVLAASSGPGALDFG 136
+ D V ++ VL S P G
Sbjct: 335 DIKPDAVALISVLHGISDPSHFAIG 359
>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 637
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
MI Y++ +EAL+ F ++ + G E T+ VL+A + K+L
Sbjct: 135 MIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTS 194
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL+ Y ++ YA G I A + V+ +M++GY Q+ + EAL +
Sbjct: 195 LDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYR 254
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + + + ++ T+ V+ A S AL GK SN+F+ ++ ++MYAK
Sbjct: 255 RAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAK 312
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GY Q+ + EAL + + + + + ++ T+ V+ A S A I K++ + S
Sbjct: 236 MVAGYVQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSG 295
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ SS YA G +R + ++ +ISG+++ R E + F
Sbjct: 296 FGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFE 355
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K++ G+H +EVT +L+ G ++ G+
Sbjct: 356 KMQQDGMHPNEVTFSSLLSVCGHTGLVEEGR 386
>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
Length = 1029
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 78/150 (52%), Gaps = 19/150 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL- 58
++S ++++G + L+ F +L S+G D+ + VVL+A S GA L + Q+ D+
Sbjct: 130 VLSCHARSGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGA--LEQGRQVHCDVL 187
Query: 59 ------SSYSLSSKTSRYAHSGRIRLAR---DPVSC------KAMISGYSQAGRFNEALE 103
S++ + YA ++ AR D ++C +MI+GY + GR+ +AL
Sbjct: 188 KSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALA 247
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
F ++E +G D+VT V +++ + G L
Sbjct: 248 LFSRMEKMGSAPDQVTYVTIISTLASMGRL 277
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 16/155 (10%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDL 58
ISGY+Q G +++L F ++ S V +DE T VL A S A KE+ I+
Sbjct: 705 ISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGF 764
Query: 59 SSY--SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
SY + S+ Y+ G + + ++ + +MI G+++ G NEAL F
Sbjct: 765 VSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQ 824
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
K++ + DEVT++ VL A S G + G+ N+F
Sbjct: 825 KMQESQLKPDEVTLLGVLIACSHAGLISEGR-NLF 858
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + GR+ +AL F ++E +G D+VT V +++ + G A+ L + + S
Sbjct: 232 MIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPS 291
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
V+ A+IS YSQ+G +E + ++ G+ T
Sbjct: 292 ---------------------TVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTF 330
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+A++ A D G+ +N+F+ +++I +Y K
Sbjct: 331 ASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVK 374
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G Q R +EA+E F ++ G T +L+ +GP + ++ K++ S
Sbjct: 601 LITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVH------S 654
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCK----------------------AMISGYSQAGRF 98
Y+L S S I L + CK A ISGY+Q G
Sbjct: 655 YTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYS 714
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++L F ++ S V +DE T VL A S AL GK
Sbjct: 715 DQSLVMFWRMRSHDVRSDEATFASVLKACSEIAALTDGK 753
Score = 39.7 bits (91), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M+ G+ Q E ++ F + + D+ T V VL A + + +++
Sbjct: 399 MLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNS 458
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D + ++ Y+ G I +A+ D VS A+I G + EA+
Sbjct: 459 MDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLK 518
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ DEV+ + A S A + GK SN + +++I++Y+K
Sbjct: 519 RMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSK 576
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 24/107 (22%)
Query: 70 YAHSGRIRLARDPVSC-----------KAMISGYSQAGRFNEALEPFGKLE-SLGVHTDE 117
Y SGR+ A + C +++S ++++G + L+ F +L S+G D+
Sbjct: 101 YGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARSGSPRDVLDAFQRLRCSIGGTPDQ 160
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ VVL+A S GAL+ G+ S+ F +++MYAK
Sbjct: 161 FGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAK 207
Score = 36.2 bits (82), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I G + EA+ +++ G+ DEV+ + A S A K++ I+ +
Sbjct: 500 LIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIHCASIKYN 559
Query: 58 LSSYSL--SSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+ S SS Y+ G + +R V A+I+G Q R +EA+E F
Sbjct: 560 VCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQ 619
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G T +L+ +GP + GK
Sbjct: 620 QVLKDGFKPSNFTFASILSGCTGPVSSVIGK 650
>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
Length = 805
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 26/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
++ GY++AG F+EAL + ++ G+ D T VL + +G G + A ++ +
Sbjct: 106 LVGGYTKAGFFDEALCLYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFD 165
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D+ +++ + Y G + AR D +S AMISGY + E LE F
Sbjct: 166 FDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFF 225
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMY 150
++ L + D +TM V++A G G NI + ++I+MY
Sbjct: 226 RMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMY 281
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + E LE F ++ L + D +TM V++A G L +L + ++
Sbjct: 207 MISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTA 266
Query: 61 YS-----LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y +S Y G + A RD VS +ISG ++ALE +
Sbjct: 267 YDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYK 326
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+E G DEVT+ VL+A + G LD G + + ++I+MY+K
Sbjct: 327 TMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSK 384
Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+G R EAL F K+ L + VT++ L+A + GA + KE L+
Sbjct: 409 VINGLRINNRCFEALIFFRKM-ILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAG 467
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + ++ Y GR+R A +D + +++GY+Q G+ +E F +
Sbjct: 468 MGFDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKGAMVMELFKR 527
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ ++ D+VT + +L A S G + G
Sbjct: 528 MVESEINPDDVTFISLLCACSRSGMVTEG 556
>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 891
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 17/153 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSG-----PGAWILAKELQI 54
M++GY Q G EAL+ F K++ + G+ T V VL A S G I +
Sbjct: 300 MMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKT 359
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALE 103
S+Y +S+ + Y+ G +A+ D ++ MI+ Y+ G NEA+
Sbjct: 360 VFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNGMIAAYAHHGYGNEAIN 419
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F K++ LG ++VT V +L A S G D G
Sbjct: 420 LFNKMQELGFQANDVTYVGLLTACSHAGLFDEG 452
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 64/118 (54%), Gaps = 14/118 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
MI GY++ GR EAL+ FG++ V V+ V+TA + G A+ L E+ +
Sbjct: 145 MIDGYARNGRTQEALDLFGRMPERNV----VSWNTVMTALAHCGRIDDAERLFNEMRERD 200
Query: 60 SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
S ++ + + +GR+ AR + VS AMI+GY+Q GRF+EAL+ F ++
Sbjct: 201 VVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERM 258
Score = 42.7 bits (99), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 56/174 (32%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q GRF+EAL+ F ++ E D+ S
Sbjct: 238 MIAGYAQNGRFDEALKLFERMP--------------------------------ERDMPS 265
Query: 61 YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE-S 110
++ + + + +G + A ++ ++ AM++GY Q G EAL+ F K++ +
Sbjct: 266 WN--TMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQAN 323
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G+ T V VL A S L G+ + ++ +A+I MY+K
Sbjct: 324 DGLKPTTGTFVTVLGACSDLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSK 377
Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 34/137 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G NEA + F + D V+V TA +S
Sbjct: 82 MISGYIKCGLINEARKLFDR-------PDAQKSVIVWTAM-----------------VSG 117
Query: 61 YSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117
Y K +R + R+ R+ VS MI GY++ GR EAL+ FG++ V
Sbjct: 118 YI---KMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPERNV---- 170
Query: 118 VTMVVVLAASSGPGALD 134
V+ V+ A + G +D
Sbjct: 171 VSWNTVMTALAHCGRID 187
>gi|15225505|ref|NP_181492.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099847|sp|O80647.1|PP195_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g39620
gi|3355489|gb|AAC27851.1| hypothetical protein [Arabidopsis thaliana]
gi|330254604|gb|AEC09698.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 836
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+ Y QAG+ +EA+ F + + + + VT+ VL +G A L K + I+ D
Sbjct: 372 MIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKAD 431
Query: 58 LSSY--SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S + ++ S YA GR A +D V+ A+ GY+Q G N+A + +
Sbjct: 432 IESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYK 491
Query: 107 KLESLGVHTDEVTMVVVLAASS-----GPGALDFGK-------SNIFLTTAIIEMYAK 152
++ GV D TMV +L + G+ +G+ S + A+I M+ K
Sbjct: 492 NMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTK 549
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+ G F E LE F + + V ++V L A++ G L K + I
Sbjct: 271 MMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGD--LVKGIAIHDYAVQ 328
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L +S S Y+ G + +A RD VS AMI+ Y QAG+ +EA+
Sbjct: 329 QGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISL 388
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F + + + + VT+ VL +G A GK S + TA+I MYAK
Sbjct: 389 FRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAK 448
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 19/90 (21%)
Query: 80 RDP--VSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
RDP V +MI GY++AG EAL FG + E G+ D+ + L A + G++DF
Sbjct: 60 RDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACA--GSMDFK 117
Query: 137 K--------------SNIFLTTAIIEMYAK 152
K S++++ TA++EMY K
Sbjct: 118 KGLRIHDLIAEMGLESDVYIGTALVEMYCK 147
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSG-----PGAWI--LAKEL 52
MI GY++AG EAL FG + E G+ D+ + L A +G G I L E+
Sbjct: 70 MIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEM 129
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+E D+ Y ++ Y + + AR D V+ M+SG +Q G + AL
Sbjct: 130 GLESDV--YIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALL 187
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD---------FGKSNIF-LTTAIIEMYAK 152
F + S V D V++ ++ A S D K IF ++ +I+MY
Sbjct: 188 LFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLIDMYCN 246
>gi|115446089|ref|NP_001046824.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|47497329|dbj|BAD19370.1| selenium binding protein-like protein [Oryza sativa Japonica Group]
gi|113536355|dbj|BAF08738.1| Os02g0468800 [Oryza sativa Japonica Group]
gi|125582005|gb|EAZ22936.1| hypothetical protein OsJ_06625 [Oryza sativa Japonica Group]
Length = 603
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---------SGPGAWILAKE 51
+ SGY G + E + F ++ +G + D V +V +++A+ G A I+
Sbjct: 226 LASGYLLRGDYLEVFDLFNRMRGVGKNVDSVVLVNLISAAVLFGNLSVAKGVHALIIKLG 285
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
+ E DL++ S + YA G + AR + V +MISGY + G NEAL
Sbjct: 286 FECEEDLAA----SLINLYAKCGDLESAREVFDAVHMANVVVWTSMISGYVEGGHLNEAL 341
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
F + + +E T+ VL+A + G+ + GK S + T +I+MY
Sbjct: 342 VMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATGLHSEPRVATGLIDMY 401
Query: 151 AK 152
+K
Sbjct: 402 SK 403
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G NEAL F + + +E T+ VL+A + G+ L K+++ + +
Sbjct: 327 MISGYVEGGHLNEALVMFDSMVCANIEPNEATLSSVLSACAKLGSANLGKKVEEQAIATG 386
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + Y+ G I LAR D AMI+GY+ G +EAL F
Sbjct: 387 LHSEPRVATGLIDMYSKFGSINLARKIFEGVTNRDIAVWSAMINGYACNGEGSEALVLFK 446
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++++ G D + VL A + G +D G
Sbjct: 447 EMKNKGFQPDGIAFTHVLTACNYSGLVDEG 476
>gi|302768953|ref|XP_002967896.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
gi|300164634|gb|EFJ31243.1| hypothetical protein SELMODRAFT_89004 [Selaginella moellendorffii]
Length = 471
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 76/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MI+ Y+Q G AL F +++ G D + +V +L + G I A+ + +
Sbjct: 71 MIAAYAQNGHDAAALRLFREMDLHGEPADRIVLVEILGVCARLELLAQGQTIHARIVALG 130
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
D + + ++ + YA G +R AR+ VS AMI+ Y++ G+ +AL+ F
Sbjct: 131 FDADTVAATAIFNMYARCGFLRRARELFDRLEEKSVVSWNAMITAYARTGQARQALDIFR 190
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+L+ G+ DE++ +LAA + +LD G+
Sbjct: 191 RLDQEGIEADEMSYSGLLAAFAMRQSLDKGR 221
Score = 43.1 bits (100), Expect = 0.034, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y++ G+ +AL+ F +L+ G+ DE++ +L A + + + L +
Sbjct: 172 MITAYARTGQARQALDIFRRLDQEGIEADEMSYSGLLAAFAMRQSLDKGRILHARIKACG 231
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + Y G + AR + VS +++ Y+ GR EAL+ F
Sbjct: 232 FEAMLQVANPLINMYGKCGCVEEARRIFDAVPSKNIVSWNTILAAYAGNGRVTEALDLFA 291
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD 134
K + + D ++ VVL A S G +D
Sbjct: 292 K---IAMPPDWISFCVVLQACSHAGLVD 316
>gi|302803123|ref|XP_002983315.1| hypothetical protein SELMODRAFT_117954 [Selaginella moellendorffii]
gi|300149000|gb|EFJ15657.1| hypothetical protein SELMODRAFT_117954 [Selaginella moellendorffii]
Length = 495
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+Q G EAL+ F +L+ G+ D V+ V VL ASS +AK + S
Sbjct: 245 MMAAYAQNGHHREALQLFWELDLDGIKHDAVSFVSVLEASSSLQ---MAKSFHSRILASG 301
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---DPVSCKA------MISGYSQAGRFNEALEPFG 106
+S T + Y G + LAR D ++ K+ MIS Y+Q G EAL+ F
Sbjct: 302 IRVSVITGTALVTTYRKCGALGLARSTFDGIAGKSILCWNTMISAYAQHGHAMEALKLFN 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
L+ G + +T V +AA G LD N+
Sbjct: 362 ALKQAGERPNSITFVSAIAACGHVGRLDDAVYNL 395
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 20/135 (14%)
Query: 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTS- 68
R + A+ FG ++ V V+ +++A + G + A EL +DL S+SS +
Sbjct: 155 RIDRAIAAFGWIKERNV----VSWTAMISAFANTGHYKEALELLKSMDLEGSSISSAETV 210
Query: 69 ---------RYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGV 113
+ H R R A + VS AM++ Y+Q G EAL+ F +L+ G+
Sbjct: 211 VSALVFALGKCGHVDRARRSFERLEAMNLVSRTAMMAAYAQNGHHREALQLFWELDLDGI 270
Query: 114 HTDEVTMVVVLAASS 128
D V+ V VL ASS
Sbjct: 271 KHDAVSFVSVLEASS 285
>gi|297596280|ref|NP_001042300.2| Os01g0197500 [Oryza sativa Japonica Group]
gi|255672971|dbj|BAF04214.2| Os01g0197500 [Oryza sativa Japonica Group]
Length = 906
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I G++ +G + ALE F +++ + + VTM VL+A A L +EL + E
Sbjct: 594 VIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAE 653
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD S + + YA G++ AR D +S +M++GY G +EAL F
Sbjct: 654 LDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFT 713
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ V D VT V VL+A G + G+
Sbjct: 714 DMAGATVEPDGVTFVAVLSACGHAGRVTEGR 744
>gi|225437286|ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 468
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY A R+++AL F +++ GV + VTMV L+A + GA + + + S
Sbjct: 181 LITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWIHEFIRRSG 240
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S Y GRI ++ + ++I G + A EA+ F
Sbjct: 241 WEFDVILGTSLIDMYGKCGRIEEGLVVFRSMKEKNVFTWNSLIKGLALARSGAEAVWWFY 300
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++E G+ DEVT++ VL A S G + G+
Sbjct: 301 RMEQEGIKADEVTLIAVLCACSHSGMVQMGRQ 332
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +I+GY A R+++AL F +++ GV + VTMV L+A + GAL+ G
Sbjct: 173 RDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGALEMGVWI 232
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++ L T++I+MY K
Sbjct: 233 HEFIRRSGWEFDVILGTSLIDMYGK 257
>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
Length = 1017
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S YS +G+ E LE F ++ G + T+V LTA G L KE+ + SS
Sbjct: 218 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 277
Query: 61 ------YSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPF 105
Y ++ + Y G++ R+ R D V+ ++I GY Q + EALE F
Sbjct: 278 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 337
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + G +DEV+M ++AAS L G SN+ + +I+MY+K
Sbjct: 338 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 396
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I GY Q + EALE F + + G +DEV+M ++ AS + EL
Sbjct: 320 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 379
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ + + SK + + GR L +D +S +I+GY+Q EALE F
Sbjct: 380 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 439
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE+ + +L ASS
Sbjct: 440 DVAKKRMEIDEMILGSILRASS 461
Score = 38.1 bits (87), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q EALE F + + DE+ + +L ASS + ++ KE+
Sbjct: 421 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 480
Query: 56 -LDL----SSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LD + K ++ R+ + +D VS +MIS + G +EA+E F +
Sbjct: 481 LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRR 540
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFL-----------TTAIIEMYA 151
+ G+ D V ++ +L+A++ AL+ G+ + +L A+++MYA
Sbjct: 541 MVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYA 596
>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
Length = 533
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q+G E+L F ++E+ G+ D TMV V++A+S G+ W+ + +
Sbjct: 247 MINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKR 306
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + L++ +A G + A D A+ISG + G AL+ F
Sbjct: 307 IERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFE 366
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++++ V D +T V VL A S G +D G
Sbjct: 367 RMQAQSVWPDPITFVGVLTACSHAGLVDKG 396
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
A++ V+ AMI+GY+Q+G E+L F ++E+ G+ D TMV V++A+S G+ +
Sbjct: 238 AKNLVAWTAMINGYAQSGVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGW 297
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N + TA+++M+AK
Sbjct: 298 VGSYVDKKRIERNDKVLTALVDMHAK 323
>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1005
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 86/178 (48%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S YS +G+ E L+ F +++ G ++ T+V LTA G L KE+ + S+
Sbjct: 235 ILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLKST 294
Query: 61 YSL-----SSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ + YA G++ R+ R D V+ ++I GY Q + EAL+ F
Sbjct: 295 HSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFC 354
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + G DEV++ V+AAS L G SN+ + +I+MY+K
Sbjct: 355 DMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSK 412
Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY Q + EAL+ F + + G DEV++ V+ AS + EL +
Sbjct: 336 LIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHG 395
Query: 61 YS-----------LSSKTSRYAHSGRIRL---ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + SK + + GR L +D +S +I+GY+ EAL+ F
Sbjct: 396 WDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFR 455
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE+ + +L A S
Sbjct: 456 DVAKKRMEIDEMMLGSILRACS 477
Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
+I+GY+ EAL+ F + + DE+ + +L A S + ++ KE+ +
Sbjct: 437 IIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKG 496
Query: 57 ------DLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+ K ++ R+ + +D VS +MIS + G NEA+E F +
Sbjct: 497 LIDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRR 556
Query: 108 LESLGVHTDEVTMVVV 123
+ G+ D V ++ +
Sbjct: 557 MAETGLLADSVALLCI 572
>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
Length = 960
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S YS +G+ E LE F ++ G + T+V LTA G L KE+ + SS
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 314
Query: 61 ------YSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPF 105
Y ++ + Y G++ R+ R D V+ ++I GY Q + EALE F
Sbjct: 315 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 374
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + G +DEV+M ++AAS L G SN+ + +I+MY+K
Sbjct: 375 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433
Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I GY Q + EALE F + + G +DEV+M ++ AS + EL
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ + + SK + + GR L +D +S +I+GY+Q EALE F
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 476
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE+ + +L ASS
Sbjct: 477 DVAKKRMEIDEMILGSILRASS 498
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q EALE F + + DE+ + +L ASS + ++ KE+
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517
Query: 56 -LDL----SSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LD + K ++ R+ + +D VS +MIS + G +EA+E F +
Sbjct: 518 LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRR 577
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFL-----------TTAIIEMYA 151
+ G+ D V ++ +L+A++ AL+ G+ + +L A+++MYA
Sbjct: 578 MVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYA 633
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY + NEAL + K+E G DEVTM +++A + G G + + +++
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S+ + YA G ++ AR D + A+I GY + R EAL+ F
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270
Query: 107 KLE-SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + +EVT++ V++A + G L+ G+ ++ L ++I+M++K
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSG-----PGAWI------L 48
+I GY + R EAL+ F ++ + +EVT++ V++A + G W+
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT 311
Query: 49 AKELQIELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPF 105
K + L+ S + SK + RI + +D +S +M++G + G EAL F
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQF 371
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
+++ + DE+T + VL A S G + GK + A+
Sbjct: 372 HLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ V +MISGY + NEAL + K+E G DEVTM +++A + L G
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K L +A++ MYAK
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAK 227
>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
Length = 666
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 86/188 (45%), Gaps = 36/188 (19%)
Query: 1 MISGYSQAGRFNEALEPF---------GKLESLGVHTDEVTMVVVLTASSGPGAWILAK- 50
+I+GY Q +EAL F G E +G D V M+ VL+A S +++
Sbjct: 154 LITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEG 213
Query: 51 ----ELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGR 97
+++ LD ++ YA G + L+R D VS +MI+ Y+Q G
Sbjct: 214 VHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGL 273
Query: 98 FNEALEPF-GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTT 144
+A E F G L++ G +EVT+ +L A + GAL G +N+ + T
Sbjct: 274 STDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMAT 333
Query: 145 AIIEMYAK 152
+II+MY K
Sbjct: 334 SIIDMYCK 341
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPF-GKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MI+ Y+Q G +A E F G L++ G +EVT+ +L A + GA + L ++
Sbjct: 264 MIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM 323
Query: 60 SYS-----LSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
Y +S Y G+ +AR+ S AMI+GY G EAL+ F
Sbjct: 324 GYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVF 383
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ GV + +T + VLAA S G L+ G
Sbjct: 384 YQMIWAGVKPNYITFISVLAACSHAGFLEEG 414
>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
chloroplastic [Vitis vinifera]
Length = 825
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
M+S + Q G +E L ++ G D VT+ +L+ +S A+++
Sbjct: 394 MVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHG 453
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E + SY + YA SG I A RD + AMI+GY+Q G E
Sbjct: 454 IQFE-GMDSYLID----MYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEE 508
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
F K+ V + VT+ +L A + G + GK N+F+ TA+++
Sbjct: 509 GFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLD 568
Query: 149 MYAK 152
MY+K
Sbjct: 569 MYSK 572
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
MI+GY+Q G E F K+ V + VT+ +L A + G L K++ +
Sbjct: 496 MIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCF 555
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ + + ++ Y+ SG I L ++ V+ MIS Y Q G AL F
Sbjct: 556 LNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFH 615
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ D VT V +L+A S G +D G
Sbjct: 616 AMLGSGIKPDSVTFVAILSACSYAGLVDEG 645
Score = 42.0 bits (97), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MI GY Q EA++ F + +ES D+VT + LTA S L ++L + S
Sbjct: 292 MIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKS 351
Query: 60 S-----YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
S L++ Y+ G I L RD V+ M+S + Q G +E L
Sbjct: 352 STILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLV 411
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK-SNIFLT----------TAIIEMYAK 152
++ G D VT+ +L+ +S + + GK ++ +L + +I+MYAK
Sbjct: 412 FAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDMYAK 469
Score = 41.2 bits (95), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 72/186 (38%), Gaps = 39/186 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK---------- 50
MIS Y + R EA + F + +G+ V+ V V P W ++
Sbjct: 189 MISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVF-----PAVWRMSDYDNANVLYGL 243
Query: 51 --ELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFN 99
+L + + +SS YA G + AR+ C MI GY Q
Sbjct: 244 VVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPI 303
Query: 100 EALEPFGK-LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAI 146
EA++ F + +ES D+VT + L A S L+ G+ + + AI
Sbjct: 304 EAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVILNAI 363
Query: 147 IEMYAK 152
I MY++
Sbjct: 364 IVMYSR 369
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 77/179 (43%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++ G+ GR EA F + + G+ ++ L A + L K+L L S
Sbjct: 305 LVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKS 364
Query: 60 SYSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+S S YA +G I A +D VS A++SGY Q G+ +EA F
Sbjct: 365 GLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVF 424
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+++ V D TMV ++ A S AL GK S + A+I+MYAK
Sbjct: 425 RKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAK 483
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 30/159 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS----------GPGAWI--- 47
++SGY Q G+ +EA F K+++ V D TMV ++ A S G G+ I
Sbjct: 407 LVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRG 466
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRF 98
+A E I ++ YA GRI L ARD VS MI+GY G
Sbjct: 467 IASETSI--------CNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLG 518
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
EA F ++ D+VT + +++A S G + GK
Sbjct: 519 KEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGK 557
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y + GR +A + F ++ + V+ ++ A W+ A + + + +
Sbjct: 139 LVSMYGKFGRLGDARKAFDEMPD----KNAVSWNALVGAHRAAADWMGADRVSQAMPVRN 194
Query: 61 YSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +++ +R G + A RD VS ++ISGY++ G++ +AL F +++
Sbjct: 195 LSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQE 254
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKSNI-------------FLTTAIIEMYAK 152
G+ E+T+V+VL A + G LD G +NI + A+I+MYAK
Sbjct: 255 NGIQPTELTLVLVLGACAKIGKLDLG-TNIHRNLQNKGIVADGLVGNALIDMYAK 308
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY++ G++ +AL F +++ G+ E+T+V+VL A + G L + L
Sbjct: 232 LISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKG 291
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ YA G + LA RD AMI G+S G EALE F
Sbjct: 292 IVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELF- 350
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+S+ + + VT + VL A S G ++ G+
Sbjct: 351 --DSMKIEPNPVTFLGVLTACSHGGLVNEGR 379
>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 884
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S YS +G+ E LE F ++ G + T+V LTA G L KE+ + SS
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 314
Query: 61 ------YSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPF 105
Y ++ + Y G++ R+ R D V+ ++I GY Q + EALE F
Sbjct: 315 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 374
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + G +DEV+M ++AAS L G SN+ + +I+MY+K
Sbjct: 375 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I GY Q + EALE F + + G +DEV+M ++ AS + EL
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ + + SK + + GR L +D +S +I+GY+Q EALE F
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 476
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE+ + +L ASS
Sbjct: 477 DVAKKRMEIDEMILGSILRASS 498
Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q EALE F + + DE+ + +L ASS + ++ KE+
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517
Query: 56 -LDL----SSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LD + K ++ R+ + +D VS +MIS + G +EA+E F +
Sbjct: 518 LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRR 577
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFL-----------TTAIIEMYA 151
+ G+ D V ++ +L+A++ AL+ G+ + +L A+++MYA
Sbjct: 578 MVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYA 633
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 91/210 (43%), Gaps = 59/210 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MI GYSQ ++ L+ + ++++ G D + + VL+A + G K + +
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247
Query: 58 --LSSYSLSSKTSRYAHSGRIRLAR----------------------------------- 80
+ S+ +S + YA+ G + LAR
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFD 307
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-- 133
D V AMISGY+++ + EAL+ F +++ + D++TM+ V++A + GAL
Sbjct: 308 RMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQ 367
Query: 134 -----------DFGKSNIFLTTAIIEMYAK 152
FG++ + + A+I+MYAK
Sbjct: 368 AKWIHTYADKNGFGRT-LPINNALIDMYAK 396
>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
Length = 878
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 21/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-LAKELQ-IELDL 58
M++ Y+QAG + A F K+ G+ +E T+ V+ A + P A + L ++ I +
Sbjct: 476 MLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKH 535
Query: 59 SSYSL----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ S+ S YA G I A RD VS +M+SGY+Q G +AL+ F
Sbjct: 536 RCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVF 595
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAKM 153
++E+ G+ D VT + V+ + G ++ G+ + + T +E YA M
Sbjct: 596 RQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACM 649
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS--SGPGAWILAKELQIELD- 57
MI+G Q G A F ++ GV ++ T +LTAS S P I A+ ++ +
Sbjct: 379 MINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQ-IHAQVIKTNYEC 437
Query: 58 --------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
L+SYS T ++ +D VS AM++ Y+QAG + A F K+
Sbjct: 438 TSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMT 497
Query: 110 SLGVHTDEVTMVVVLAASSGPGA-LDFGK------------SNIFLTTAIIEMYAK 152
G+ +E T+ V+ A + P A +D G+ + +++A++ MYA+
Sbjct: 498 MHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYAR 553
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 28/175 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S Y + GR +A + F ++ + V+ ++ A W+ A + + + +
Sbjct: 153 LVSMYGKFGRLGDARKAFDEMPD----KNAVSWNALVGAHRAAADWMGADRVSQAMPVRN 208
Query: 61 YSL-SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +++ +R G + A RD VS ++ISGY++ G++ +AL F +++
Sbjct: 209 LSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQE 268
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGKSNI-------------FLTTAIIEMYAK 152
G+ E+T+V+VL A + G LD G +NI + A+I+MYAK
Sbjct: 269 NGIQPTELTLVLVLGACAKIGKLDLG-TNIHRNLQNKGIVADGLVGNALIDMYAK 322
Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY++ G++ +AL F +++ G+ E+T+V+VL A + G L + L
Sbjct: 246 LISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIGKLDLGTNIHRNLQNKG 305
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ YA G + LA RD AMI G+S G EALE F
Sbjct: 306 IVADGLVGNALIDMYAKCGMLDLAKKVFDRMSMRDITCWNAMIVGFSVHGCSREALELF- 364
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+S+ + + VT + VL A S G ++ G+
Sbjct: 365 --DSMKIEPNPVTFLGVLTACSHGGLVNEGR 393
>gi|242084152|ref|XP_002442501.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
gi|241943194|gb|EES16339.1| hypothetical protein SORBIDRAFT_08g020970 [Sorghum bicolor]
Length = 701
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG+ Q G F +A F + D T L A + A + ++L L S
Sbjct: 428 VISGFVQNGLFVDAFHHFMLMRRGTNRADWSTYASCLRACANLAALHVGRQLHSLLVRSG 487
Query: 61 -----YSLSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ S YA GR+ + +D VS A++ GY+ G+ EA+ F
Sbjct: 488 HINDLFARNALISTYAKCGRMLEAKQIFDEMVGKDIVSWNALVDGYASNGQGTEAISVFR 547
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++E+ GV DEVT V +L+A S G +D G
Sbjct: 548 EMEANGVRPDEVTFVGILSACSRAGLIDEG 577
Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
M+S ++ GR +EA F + S + V+ ++ A S G A+ L +
Sbjct: 55 MLSALARHGRIDEARALFDGMPS----RNAVSWNAMIAALSDHGRVADARGLFDRMPSRD 110
Query: 60 SYSLSSKTSRYAHSGRIRLARDPV---------SC-KAMISGYSQAGRFNEALE 103
+S + S YA +G + LARD + +C AMISGY++ GRF++A++
Sbjct: 111 DFSWTVMVSCYARAGELELARDVLDRMPGDKCTACYNAMISGYAKNGRFDDAVK 164
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI-LAKELQIELDLS 59
M+SGY+Q G A++ F +L GV +E T VL A + P A + K+ S
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 523
Query: 60 SYS-----LSSKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPF 105
+S S+ + YA G I ++ RD VS +MISGY+Q G ++L+ F
Sbjct: 524 GFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIF 583
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ S + D +T + V++A + G ++ G+
Sbjct: 584 EEMRSKNLELDGITFIGVISACTHAGLVNEGQ 615
Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-AWILAKELQIELDLS 59
+ISGY Q GR + A+ F ++ GV + T +LTA++ + I A ++ + S
Sbjct: 367 IISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYENS 426
Query: 60 ---------SYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
SYS + A + +D V+ AM+SGY+Q G A++ F +L
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAK 486
Query: 111 LGVHTDEVTMVVVLAASSGPGA------------LDFGKSN-IFLTTAIIEMYAK 152
GV +E T VL A + P A + G SN + +++A++ MYAK
Sbjct: 487 EGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAK 541
>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
Length = 548
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY++ G +ALE F + + DE TM VL+A + G+ A++ +Q
Sbjct: 253 LIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHR 312
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--------PVSC-KAMISGYSQAGRFNEALEPFG 106
+ + + ++ +A G + AR+ C +MIS S G+ EA+ F
Sbjct: 313 IRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFS 372
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD-----FGKSNIFLTTAIIEMY 150
K+E +E+T++ VL A + G +D F K +I+ A +E Y
Sbjct: 373 KMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHY 421
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ V+ A+I+GY++ G +ALE F + + DE TM VL+A + G+L+
Sbjct: 245 RNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKV 304
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ N F+ +++M+AK
Sbjct: 305 HNFIIQHRIRKNQFVMNGLVDMFAK 329
>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
Length = 804
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M++ + Q E L +++ G D VT+ VL+ASS G + K+ I
Sbjct: 389 MVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG 448
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L S YA SGR+ +A RD V+ AMI+GY+Q+G+ +A+ F
Sbjct: 449 IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVF 508
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDF-GK------------SNIFLTTAIIEMYAK 152
+ G+ VT+ VL A G + GK +N+F+ TA+I+MY+K
Sbjct: 509 RAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSK 568
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
MI+GY Q G+F+EA++ F K L S V D VT + LTA+S L ++L
Sbjct: 286 MITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKG 345
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L ++ Y+ G ++ A +D V+ M++ + Q E L
Sbjct: 346 MHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLL 405
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G D VT+ VL+ASS G L GK L + +I+MYAK
Sbjct: 406 VYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAK 464
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWI-----LAKELQIELDL 58
Y + GR EALE F ++ G V+ V + A+ + +W L + +E
Sbjct: 188 YVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYIN 247
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK-L 108
+ +SS ++ G ++ AR D + K MI+GY Q G+F+EA++ F K L
Sbjct: 248 DLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKIL 307
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
S V D VT + L A+S + G+ + L A++ MY++
Sbjct: 308 GSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSR 364
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
MISGY ++G FNE ALE F K+ ++ D T V A + L K++
Sbjct: 346 MISGYLRSG-FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKS 404
Query: 56 -LDLSSYSLSSKTSR-YAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEP 104
L+++ S+S+ + YA G + R+ RD +S ++++ YSQ +++A+E
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F + + G+ ++ T VL + + L++G+ + + +A+++MYAK
Sbjct: 465 FSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAK 524
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+++ YSQ +++A+E F + + G+ ++ T VL + + G + ++
Sbjct: 448 LVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVG 507
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD+ S+ YA G + A+ D VS A+I+G++Q G ++AL+ F
Sbjct: 508 LDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFR 567
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ LGV + VT + VL A S G ++ G
Sbjct: 568 RMVQLGVEPNAVTFLCVLFACSHGGLVEEG 597
Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+G++ + +A + F ++ GV D T + V A AKE+ +EL
Sbjct: 243 MITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELG 302
Query: 58 LSSYSL--SSKTSRYAHSGRIRLARDP-----VSCK------AMISGYSQAGRFNE-ALE 103
+ S +L ++ + G ++ AR ++C+ AMISGY ++G FNE ALE
Sbjct: 303 VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG-FNEKALE 361
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F K+ ++ D T V A + L GK
Sbjct: 362 LFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395
Score = 39.3 bits (90), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ S +I+G ++ G F + E F +++S G+ D+ +L G +++ G
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193
Query: 138 ----------SNIFLTTAIIEMYAKM 153
S+ F++TA++ MYAK+
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKL 219
>gi|255579341|ref|XP_002530515.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529919|gb|EEF31847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 359
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q G+ NEA+ F ++ES V DE MV +++A S G+ LA+ L SS
Sbjct: 177 LISGYAQNGQPNEAVRIFLEMESKNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSS 236
Query: 61 ------YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ +++ A G + A RD ++ +MI G S G +A+ F
Sbjct: 237 IDIGQTHVIAALIDMNAKCGNMERAKKLFEEMPKRDLITYCSMIQGLSIHGCAEQAVGLF 296
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + + DE VVL A S G +D G+
Sbjct: 297 NRMLNESLIPDEAAFTVVLTACSRGGLVDEGR 328
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 15/160 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
M+ GY G A F ++ + + + + A G +LA+++ E+ + +
Sbjct: 84 MVVGYLNVGDLGNAERLFDQMPERNLKSWNAMIDGWVKA----GDLLLARKVFDEMPERN 139
Query: 60 SYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFGKLES 110
S + YA +G + ARD ++ A+ISGY+Q G+ NEA+ F ++ES
Sbjct: 140 VVSFTVMIDGYAKAGDMTTARDLFERAPKRDVIAWSALISGYAQNGQPNEAVRIFLEMES 199
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK-SNIFLTTAIIEM 149
V DE MV +++A S G+LD + ++ +L+ + I++
Sbjct: 200 KNVKPDEYIMVSLMSACSQLGSLDLARWADCYLSKSSIDI 239
>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 548
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY++ G +ALE F + + DE TM VL+A + G+ A++ +Q
Sbjct: 253 LIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKVHNFIIQHR 312
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD--------PVSC-KAMISGYSQAGRFNEALEPFG 106
+ + + ++ +A G + AR+ C +MIS S G+ EA+ F
Sbjct: 313 IRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSSHGQSIEAIRLFS 372
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD-----FGKSNIFLTTAIIEMY 150
K+E +E+T++ VL A + G +D F K +I+ A +E Y
Sbjct: 373 KMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFDIYGVAAAVEHY 421
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ V+ A+I+GY++ G +ALE F + + DE TM VL+A + G+L+
Sbjct: 245 RNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQARKV 304
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ N F+ +++M+AK
Sbjct: 305 HNFIIQHRIRKNQFVMNGLVDMFAK 329
>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
Length = 688
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y + G++ EAL+ F K+ + V DE T+V +L A S G ++ K++ +
Sbjct: 364 MISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIH------N 417
Query: 61 YSLSSK-----------TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNE 100
Y LS+K YA G + A D VS +I + G E
Sbjct: 418 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 477
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
A++ F ++++ G DE+T+ +L+A S G +D G
Sbjct: 478 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 513
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S S YA G I +AR + VS +MIS Y + G++ EAL+ F K+ +
Sbjct: 329 SWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR 388
Query: 113 VHTDEVTMVVVLAASSGPGALDFGK-------SN-----IFLTTAIIEMYAK 152
V DE T+V +LAA S G L GK SN + L ++I+MYAK
Sbjct: 389 VVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAK 440
>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
Length = 804
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M++ + Q E L +++ G D VT+ VL+ASS G + K+ I
Sbjct: 389 MVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHG 448
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ L S YA SGR+ +A RD V+ AMI+GY+Q+G+ +A+ F
Sbjct: 449 IEGEGLESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNAMIAGYTQSGQPEKAILVF 508
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDF-GK------------SNIFLTTAIIEMYAK 152
+ G+ VT+ VL A G + GK +N+F+ TA+I+MY+K
Sbjct: 509 RAMLEAGLEPTSVTLASVLPACDPVGGGVYSGKQIHCFAVRRCLDTNVFVGTALIDMYSK 568
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 80/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------ 53
MI+GY Q G+F+EA++ F K L S V D VT + LTA+S L ++L
Sbjct: 286 MITGYVQNGQFSEAIDLFSKILGSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKG 345
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ L ++ Y+ G ++ A +D V+ M++ + Q E L
Sbjct: 346 MHRTLPVILGNALVVMYSRCGNVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLL 405
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+++ G D VT+ VL+ASS G L GK L + +I+MYAK
Sbjct: 406 VYEMQKSGFAADSVTLTAVLSASSNTGDLQIGKQAHGYLIRHGIEGEGLESYLIDMYAK 464
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 29/177 (16%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWI-----LAKELQIELDL 58
Y + GR EALE F ++ G V+ V + A+ + +W L + +E
Sbjct: 188 YVKTGRPQEALELFVRMLEDGFRPTPVSFVNIFPAAVADDPSWPFQLYGLLVKYGVEYIN 247
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK-L 108
+ +SS ++ G ++ AR D + K MI+GY Q G+F+EA++ F K L
Sbjct: 248 DLFVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKIL 307
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
S V D VT + L A+S + G+ + L A++ MY++
Sbjct: 308 GSREVPLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSR 364
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 89/179 (49%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
MISGY + NEAL + K+E G DEVTM +++A + G G + + +++
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + S+ + YA G ++ AR D + A+I GY + R EAL+ F
Sbjct: 211 MKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFR 270
Query: 107 KLE-SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + +EVT++ V++A + G L+ G+ ++ L ++I+M++K
Sbjct: 271 EVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSK 329
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSG-----PGAWI------L 48
+I GY + R EAL+ F ++ + +EVT++ V++A + G W+
Sbjct: 252 LIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRT 311
Query: 49 AKELQIELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPF 105
K + L+ S + SK + RI + +D +S +M++G++ G EAL F
Sbjct: 312 QKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQF 371
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAI 146
+++ + DE+T + VL A S G + GK + A+
Sbjct: 372 RLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEAL 412
Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R+ V +MISGY + NEAL + K+E G DEVTM +++A + L G
Sbjct: 143 RNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKL 202
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K L +A++ MYAK
Sbjct: 203 HSHIREMDMKICAVLGSALVNMYAK 227
>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
Length = 673
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M+SG Q G E L F ++ VH E TMV VL A + G WI ++
Sbjct: 194 MLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYG 253
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L +S+ +S YA ++ AR D V AMI GY+Q R +AL+ F
Sbjct: 254 LSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFL 313
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + + + VT+ V++AS+ L G+S + + A+++MYAK
Sbjct: 314 HKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDVVRNALVDMYAK 371
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 28/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
MI GY+Q R +AL+ F + + + + VT+ V++AS+ L + +
Sbjct: 295 MIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLG 354
Query: 54 -IELDLSSYSLSSKTSRY-----AHS--GRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
+E D+ +L ++ A+S GRI L +D V+ +M++GYS+ G NE+L F
Sbjct: 355 TMESDVVRNALVDMYAKCQALPEANSIFGRI-LIKDVVAWNSMMAGYSENGMANESLVLF 413
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D +++V L+A L GK SNI++ TA++ +Y+K
Sbjct: 414 NRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYAFMSNIYVNTALLNLYSK 472
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKEL- 52
M++GYS+ G NE+L F ++ G+ D +++V L+A G G A +
Sbjct: 396 MMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSACVCLADLHIGKGFHTYAIKYA 455
Query: 53 ---QIELDLSSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
I ++ + +L SK + + R+ R+ V+ AMI GY G +++ F
Sbjct: 456 FMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFN 515
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ +H +EV +L+A S G + GK
Sbjct: 516 EMLKENIHPNEVVFTSILSACSHTGMVTAGK 546
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+ ++S YA +G + AR + VS +M+SG Q G E L F ++
Sbjct: 158 FVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQD 217
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
VH E TMV VLAA + G L G+ +N F++ ++++MYAK
Sbjct: 218 NVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYGLSTNSFISASLLDMYAK 270
>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Brachypodium distachyon]
Length = 515
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+++G +++G + AL + + + GV DE + L++ +G L + + + L
Sbjct: 114 LLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLG 173
Query: 58 LSSYSL--SSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L + +S S YA +G +R AR PV+ A+I GY+Q GR E+L+ +
Sbjct: 174 LEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYA 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ G D VT + +L A S G +D G+++
Sbjct: 234 EMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHF 267
>gi|297738048|emb|CBI27249.3| unnamed protein product [Vitis vinifera]
Length = 707
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY Q E L F ++ V ++ T+ ++TA + GA W+ ++
Sbjct: 256 MIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSG 315
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
DL+S+ ++ Y G IR A D VS AMI GY+Q G EAL+ F
Sbjct: 316 FDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFT 375
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
+ + VT VL+A + G+L+ G+S + A+++MYAK
Sbjct: 376 DERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATFENALVDMYAK 432
Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI GY+Q G EAL+ F + + VT VL+A + G+ + + + I+L
Sbjct: 357 MIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLG 416
Query: 58 LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + YA I AR D ++ ++ISGY+Q G EALE F +
Sbjct: 417 SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQ 476
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ S V+ D +T+V VL+A + GA G S
Sbjct: 477 MRSDSVYPDAITLVSVLSACASVGAYRVGSS 507
Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 31/133 (23%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY+Q G EALE F ++ S V+ D +T+V VL+A + GA
Sbjct: 457 IISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGA--------------- 501
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y + S YA + RD + +LE FG + + +EV
Sbjct: 502 YRVGSSLHGYAIKAGLLSGRDC----------------SRSLELFGDMLKEKLEPNEVIF 545
Query: 121 VVVLAASSGPGAL 133
+L+A S G L
Sbjct: 546 TTILSACSHSGML 558
>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 707
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
MI + + G EAL F +++ GV + +M+ VL+ AS G + A+ ++ E
Sbjct: 306 MIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSE 365
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
D Y S + Y G + L +D V +MI+GYSQ G EAL F
Sbjct: 366 FDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFH 425
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ S GV DEVT + VL+A S G + G
Sbjct: 426 DMCSSGVQPDEVTFIGVLSACSYSGKVKEG 455
Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 43/114 (37%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY Q GR +EA E F +++ V
Sbjct: 182 MIGGYCQVGRLDEARELFDEMKVRNV---------------------------------- 207
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
++ ++ S YA +GR+ +AR + VS AM+ GY+Q+GR EA E F
Sbjct: 208 FTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELF 261
Score = 43.1 bits (100), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 47/169 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILA-KELQIELDLS 59
M+ GY+Q+GR EA E F + P WI+A E+ ++ L+
Sbjct: 244 MLMGYTQSGRMKEAFELFEAM---------------------PVKWIVACNEMILQFGLA 282
Query: 60 SYSLSSKTSRYAHSGRIRLA----RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115
H R+ RD + AMI + + G EAL F +++ GV
Sbjct: 283 GE---------MHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVAL 333
Query: 116 DEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ +M+ VL+ + +LD G+ ++++ + +I MY K
Sbjct: 334 NFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVK 382
>gi|302799473|ref|XP_002981495.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
gi|300150661|gb|EFJ17310.1| hypothetical protein SELMODRAFT_114873 [Selaginella moellendorffii]
Length = 605
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 32/176 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP--GAWILAKELQIELDL 58
+IS ++Q G + EA++ F ++ +T +V+ A +G AW + E+ +
Sbjct: 273 LISVHAQTGDYQEAVQIFNRMPVR--NTVSYNLVIAANAEAGNLWQAWRIFDEMPCK--- 327
Query: 59 SSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAMISGYSQAGRFNEALEPFGKL 108
S S +S YA G + AR D VS +I+ Y+Q+G EA+ F ++
Sbjct: 328 DSVSWNSLIQGYAQLGYVDDARVMFDTMMPKKDVVSWSCIIAAYAQSGHCREAINLFQRM 387
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ V +E+ +V LAA SG L GK+ ++F+ TA++ MYAK
Sbjct: 388 D---VEPNEMVIVSTLAACSGAKDLALGKAIHARILSPDLRKSVFVGTALLNMYAK 440
>gi|414887716|tpg|DAA63730.1| TPA: hypothetical protein ZEAMMB73_596066 [Zea mays]
Length = 552
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 73/173 (42%), Gaps = 22/173 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY G A++ F + GV + VT+V+ L G + + L
Sbjct: 180 MIGGYVNVGDVGTAVQMFTAMRWSGVDVN-VTVVITLIGCGWQGESVHGFCAKAGLCDDV 238
Query: 61 YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
++ Y G I A RD V C M GY++AG+ EA++ G + L
Sbjct: 239 KVAAAMVRMYVREGSIECASKVFHETARRDLVLCNCMADGYAKAGQIQEAMDLIGGMRQL 298
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G+ T+V VL+A GAL G+S + L TAI++MY K
Sbjct: 299 GMRPSSGTLVGVLSACGASGALAAGRSVHELAEEARLELDSTLGTAIMDMYFK 351
>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
Length = 1033
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+IS Y Q EA + G +E + VL+ PG + A L I
Sbjct: 425 IISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVLSVCGSMALLEPGKQVHAYALCIG 484
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + S+ S Y+ SG ++ A D VS AMI+GY++ G EA+ F
Sbjct: 485 LDHETMVHSALISMYSRSGNLQEASKIFDSIKNNDIVSWTAMINGYAEHGYSQEAISLFE 544
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ S+G+ D VT + +L A + G +D G
Sbjct: 545 NISSVGLMPDYVTFIGILTACNHAGLVDLG 574
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 79/175 (45%), Gaps = 22/175 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGPGAWILAKEL-----Q 53
M+SGY +G F +E F ++ S V + T+V V +A +G G+ AK L +
Sbjct: 192 MVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVSVASACAGLGSLEYAKGLHAYVEK 251
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ L+ +S Y G I LAR D S AMISG + G EA+
Sbjct: 252 VGLEGELIVKNSLIDMYGKCGSIELARGLFGLMPQKDLHSWTAMISGLASHGHGKEAVAL 311
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYAKM 153
F ++ GV D T VVVL+A S G +D G S N + T I+ Y M
Sbjct: 312 FFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGISIFNSMENEYKVTPDIKHYGCM 366
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 29/167 (17%)
Query: 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDLSSYSLSSKT--- 67
AL+ F ++ GV TD T+ ++ A S G L + L + L SS +
Sbjct: 105 ALQLFDQMRHRGVTTDRYTLPFLIHACSS-GDRPLCESLHGQSLRLGYSSVLFTQTALMN 163
Query: 68 ----SRYAHSGRIRL----ARDPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHTDE 117
R+ + R A+D V+ M+SGY +G F +E F ++ S V +
Sbjct: 164 AYFACRFEVAARRVFDEMQAKDVVAWTGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNV 223
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
T+V V +A +G G+L++ K + + ++I+MY K
Sbjct: 224 ATVVSVASACAGLGSLEYAKGLHAYVEKVGLEGELIVKNSLIDMYGK 270
>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
Length = 549
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y + G++ EAL+ F K+ + V DE T+V +L A S G ++ K++ +
Sbjct: 225 MISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIH------N 278
Query: 61 YSLSSK-----------TSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNE 100
Y LS+K YA G + A D VS +I + G E
Sbjct: 279 YILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLE 338
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
A++ F ++++ G DE+T+ +L+A S G +D G
Sbjct: 339 AIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMG 374
Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 21/112 (18%)
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
S +S S YA G I +AR + VS +MIS Y + G++ EAL+ F K+ +
Sbjct: 190 SWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSR 249
Query: 113 VHTDEVTMVVVLAASSGPGALDFGK-------SN-----IFLTTAIIEMYAK 152
V DE T+V +LAA S G L GK SN + L ++I+MYAK
Sbjct: 250 VVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAK 301
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 88/180 (48%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---- 55
MISGY ++G FNE ALE F K+ ++ D T V A + L K++
Sbjct: 346 MISGYLRSG-FNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIKS 404
Query: 56 -LDLSSYSLSSKTSR-YAHSGRI--------RLA-RDPVSCKAMISGYSQAGRFNEALEP 104
L+++ S+S+ + YA G + R+ RD +S ++++ YSQ +++A+E
Sbjct: 405 GLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEI 464
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
F + + G+ ++ T VL + + L++G+ + + +A+++MYAK
Sbjct: 465 FSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAK 524
Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+++ YSQ +++A+E F + + G+ ++ T VL + + G + ++
Sbjct: 448 LVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVG 507
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD+ S+ YA G + A+ D VS A+I+G++Q G ++AL+ F
Sbjct: 508 LDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFR 567
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ LGV + VT + VL A S G ++ G
Sbjct: 568 RMVQLGVEPNAVTFLCVLFACSHGGLVEEG 597
Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+G++ + +A + F ++ GV D T + V A AKE+ +EL
Sbjct: 243 MITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELG 302
Query: 58 LSSYSL--SSKTSRYAHSGRIRLARDP-----VSCK------AMISGYSQAGRFNE-ALE 103
+ S +L ++ + G ++ AR ++C+ AMISGY ++G FNE ALE
Sbjct: 303 VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLRSG-FNEKALE 361
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F K+ ++ D T V A + L GK
Sbjct: 362 LFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGK 395
Score = 39.3 bits (90), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ S +I+G ++ G F + E F +++S G+ D+ +L G +++ G
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193
Query: 138 ----------SNIFLTTAIIEMYAKM 153
S+ F++TA++ MYAK+
Sbjct: 194 HAQIVIRGFTSHTFVSTALLNMYAKL 219
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 76/150 (50%), Gaps = 19/150 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL- 58
++S ++++G + L+ F ++ S+G D+ + VVL+A S GA L Q+ D+
Sbjct: 127 VLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGA--LEHGRQVHCDVL 184
Query: 59 ------SSYSLSSKTSRYAHSGRIRLAR---DPVSC------KAMISGYSQAGRFNEALE 103
S + + YA G + AR D ++C +MI+GY + GR+ +AL
Sbjct: 185 KSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALA 244
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
F ++E +G D+VT V +++ + G L
Sbjct: 245 LFSRMEKMGSVPDQVTCVTIISTLASMGRL 274
Score = 55.5 bits (132), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY + GR+ +AL F ++E +G D+VT V +++ + G A+ L
Sbjct: 229 MIAGYHRVGRYQQALALFSRMEKMGSVPDQVTCVTIISTLASMGRLGDARTLL------- 281
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
RIR+ V+ A+I+ YSQ+G +E + ++ G+ T
Sbjct: 282 -------------KRIRMT-STVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTF 327
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L+A++ A D G+ +N+F+ +++I +Y K
Sbjct: 328 ASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVK 371
Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELDL 58
ISGY+Q G ++L F ++ S V +DE T VL A S A KE+ ++
Sbjct: 702 ISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGF 761
Query: 59 SSY--SLSSKTSRYAHSGRI----------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
SY + S+ Y+ G + + ++ + +MI G+++ G NEAL F
Sbjct: 762 VSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQ 821
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K++ + D+VT++ VL A S G + G
Sbjct: 822 KMQESQIKPDDVTLLGVLIACSHAGLISEG 851
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 76/186 (40%), Gaps = 40/186 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G Q R +EA+E F ++ G T +L+ + P + ++ K++
Sbjct: 598 LITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVH------C 651
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCK----------------------AMISGYSQAGRF 98
Y+L S S I L + CK A ISGY+Q G
Sbjct: 652 YTLKSAILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYS 711
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAI 146
++L F ++ S V +DE T VL A S AL GK S T+A+
Sbjct: 712 VQSLVMFWRMRSYDVRSDEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSAL 771
Query: 147 IEMYAK 152
++MY+K
Sbjct: 772 MDMYSK 777
Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 24/107 (22%)
Query: 70 YAHSGRIRLARDPVSC-----------KAMISGYSQAGRFNEALEPFGKLE-SLGVHTDE 117
Y SGR+ A ++C +++S ++++G + L+ F ++ S+G D+
Sbjct: 98 YGRSGRVGYAWRALACCTGAPASSAAASSVLSCHARSGSPRDVLDAFQRIRCSIGSTPDQ 157
Query: 118 VTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ VVL+A S GAL+ G+ S++F +++MYAK
Sbjct: 158 FGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAK 204
Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
++ G+ Q E ++ F + + D+ T V VL A + L +++
Sbjct: 396 ILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNG 455
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D + ++ Y+ G I +A+ D VS A+I G + EA+
Sbjct: 456 MDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLK 515
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ DEV+ + A S A++ GK SN + +++I++Y+K
Sbjct: 516 RMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLIDLYSK 573
>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1047
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q ++AL F ++ G+ +DEV + ++A +G A +++ + +S
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 604
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ + Y+ G I A D ++ A++SG+ Q+G EAL F
Sbjct: 605 FSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFA 664
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ ++ T + A+S + GK S + AII MYAK
Sbjct: 665 RMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAK 722
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG+ Q+G EAL F ++ G+ ++ T + A+S K++ + +
Sbjct: 646 LVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTG 705
Query: 61 YSLSSKT-----SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ S YA G I A+ + VS AMI+ YS+ G +EAL+ F
Sbjct: 706 YDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFD 765
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V + VT+V VL+A S G +D G
Sbjct: 766 QMIHSNVRPNHVTLVGVLSACSHIGLVDKG 795
Score = 45.1 bits (105), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG S+ EA+ F + LG+ VL+A + + ++L ++L
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SS Y ++ S Y H G + A RD V+ +I+G SQ G +A+E F
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ G+ D T+ ++ A S G L G+ SN + A++ +YAK
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAK 419
Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 21/130 (16%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGR--------IRLA-RDPVSCKAMISGYSQ 94
G I ++ ++ L++Y S YA G+ IR A +D VS MI+GY+Q
Sbjct: 492 GEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 551
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFL 142
++AL F ++ G+ +DEV + ++A +G AL G+ S++
Sbjct: 552 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPF 611
Query: 143 TTAIIEMYAK 152
A++ +Y+K
Sbjct: 612 QNALVTLYSK 621
>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1212
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 40/186 (21%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI AGR+ EA+E + ++ LGV D T VL A GA+ KE ++ ++
Sbjct: 119 MIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKAC---GAF---KERRLGCEIHG 172
Query: 61 -----------YSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRF 98
+ ++ + YA G + AR DPVS ++IS + G
Sbjct: 173 VAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGES 232
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAI 146
EAL F +++ +GV ++ T V L A GP + G+ ++++++ A+
Sbjct: 233 LEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNAL 292
Query: 147 IEMYAK 152
I MYA
Sbjct: 293 IAMYAN 298
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+IS + G EAL F +++ +GV ++ T V L A GP G I A L+
Sbjct: 222 IISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSN 281
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ + YA+ G++ L +D VS ++SG Q +++A+ F
Sbjct: 282 HFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQ 341
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G D+V+++ ++AAS L G SN+ + ++I+MY K
Sbjct: 342 DMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGK 399
Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ G EALE F L + D +T+V VL A++ + KE+ L
Sbjct: 524 MITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKG 583
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L +S YA G + AR D + +MI+ G +A++ F
Sbjct: 584 FFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFS 643
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
K+ V D +T + +L A S G + GK +
Sbjct: 644 KMTDENVLPDHITFLALLYACSHSGLVVEGKQHF 677
Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I+GY+Q +AL K++ + D + + +L A SG + L KE+ ++
Sbjct: 424 IIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGG 483
Query: 58 LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
L+ + + + Y + AR D VS +MI+ G EALE F
Sbjct: 484 LADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNS 543
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK--------SNIFL----TTAIIEMYAK 152
L + D +T+V VL A++ +L GK FL ++++MYA+
Sbjct: 544 LIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYAR 600
>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Glycine max]
Length = 775
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 59/118 (50%), Gaps = 23/118 (19%)
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LDL S++ S S Y G I+ A +D VS AMISGY+Q F+EAL F
Sbjct: 335 LDLISWN--SMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQ 392
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+++ GV DE +V ++A + LD GK N+ L+T +I+MY K
Sbjct: 393 EMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMK 450
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 22/155 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILA----KE 51
MISGY+Q F+EAL F +++ GV DE +V ++A + G WI A +
Sbjct: 374 MISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNK 433
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEAL 102
LQ+ + LS ++ Y G + A + + A+I G + G ++L
Sbjct: 434 LQVNVILS----TTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSL 489
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F ++ G +E+T + VL A G ++ G+
Sbjct: 490 NMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGR 524
>gi|359489798|ref|XP_002274780.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 804
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MIS ++ + ALE F +++S +E+T V +L A S GA L + +Q
Sbjct: 283 MISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAG 342
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LS+ LSS Y GRI R D V +MI+GY G +EALE F
Sbjct: 343 YLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFS 402
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+ + GV +EV + VL+A S G
Sbjct: 403 NMLACGVKPNEVVFISVLSACSHCG 427
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D +S AMIS ++ + ALE F +++S +E+T V +L A S GA + G+
Sbjct: 275 KDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESI 334
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN FL++A+I++Y K
Sbjct: 335 QAHATKAGYLSNAFLSSALIDLYCKF 360
Score = 43.5 bits (101), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V AM+S ++G++ EA E F ++ GV + V++V +L A + GAL FGK
Sbjct: 73 KDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEI 132
Query: 138 -----SNIF-----LTTAIIEMYAK 152
+F + ++++MYAK
Sbjct: 133 HGFSIKKMFHPLTNVHNSLVDMYAK 157
>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 919
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG++Q+G + EAL+ F K++ G + T V ++AS+ K++ + +
Sbjct: 518 LISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTG 577
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y+ ++ S Y G I A R+ VS +I+ SQ GR EAL+ F
Sbjct: 578 YTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFD 637
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ G+ +VT V VL A S G ++ G
Sbjct: 638 QMKQQGLKPSDVTFVGVLTACSHVGLVEEG 667
Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY Q EALE F ++++ G+ D + + ++A +G A ++ + +S
Sbjct: 417 MIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSG 476
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
YS YA G + A ++ ++ +ISG++Q+G + EAL+ F
Sbjct: 477 YSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFM 536
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K++ G + T V ++AS+ + GK S ++ A+I +Y K
Sbjct: 537 KMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGK 594
Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS- 59
++SGY+Q G EA+ + ++ GV + +L+A + + L + + +++
Sbjct: 114 VLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQG 173
Query: 60 ----SYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ S Y RLA D V+ +ISG++Q G + AL F
Sbjct: 174 FFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFD 233
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G+ D VT+ +LAA S G L GK
Sbjct: 234 EMQLSGLSPDSVTIASLLAACSAVGDLRKGKQ 265
Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG++Q G + AL F +++ G+ D VT+ +L A S G K+L L +
Sbjct: 215 LISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAG 274
Query: 61 YSLS-----SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SL S Y SG I A + V M+ Y Q ++ + F
Sbjct: 275 MSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFY 334
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ + GV ++ T +L + G + G +S+++++ +I+MY+K
Sbjct: 335 RMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSK 392
Score = 39.3 bits (90), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 20/153 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M+ Y Q ++ + F ++ + GV ++ T +L + G L +++
Sbjct: 316 MLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNG 375
Query: 54 ---------IELDL-SSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
+ +D+ S Y K R + +D VS +MI+GY Q EALE
Sbjct: 376 FQSDMYVSGVLIDMYSKYGWLDKAQRILD---MIEEKDVVSWTSMIAGYVQHEFCKEALE 432
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++++ G+ D + + ++A +G A+ G
Sbjct: 433 TFKEMQACGIWPDNIGLASAISACAGIKAVHQG 465
>gi|125563696|gb|EAZ09076.1| hypothetical protein OsI_31338 [Oryza sativa Indica Group]
Length = 548
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 71/152 (46%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQ-- 53
MI+G AGR EA+E F ++ D VTMV +LTA + G W+ A Q
Sbjct: 263 MIAGCVNAGRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRWVHAHVEQEG 322
Query: 54 -----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPF 105
+ LD + ++ K + R+ L R VS MISG + GR EAL+ F
Sbjct: 323 RQWRTVLLDNALINMYVKCGAVEDAHRLFLVMPRRSTVSWTTMISGLAIHGRAEEALDLF 382
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ D T++ VL A S G +D G+
Sbjct: 383 HRMQE---RPDGATLLAVLLACSNAGRVDDGR 411
Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK- 137
RD V+ MI+G AGR EA+E F ++ D VTMV +L A + G L G+
Sbjct: 254 GRDSVAWTTMIAGCVNAGRAAEAVELFWRMRKANAKVDAVTMVALLTACAEQGDLRLGRW 313
Query: 138 ------------SNIFLTTAIIEMYAK 152
+ L A+I MY K
Sbjct: 314 VHAHVEQEGRQWRTVLLDNALINMYVK 340
>gi|357136551|ref|XP_003569867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Brachypodium distachyon]
Length = 580
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
MISGY Q G + +E + +++ D +T V L+A + GA L +E++
Sbjct: 177 MISGYEQNGLAEQGIEVYKEMKVAKAVPDSMTFVATLSACAQAGALDLGREVERRIVSER 236
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D+S + S+ + YA G + AR + V+ +MI+GY G +EA++ +
Sbjct: 237 MDISVFLGSALVNMYARCGVVDKARQWFDVLQERNVVTWTSMIAGYGMHGHGHEAIKLYH 296
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ G ++VT V VL+A + G + G+
Sbjct: 297 LMRCKGPPPNDVTFVAVLSACAHAGLITEGR 327
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
+ L++ Y+ GR+ +AR + V+ AMISGY Q G + +E + +++
Sbjct: 141 FVLTALVVLYSKCGRLPVARKLFDAIRDKNVVAWNAMISGYEQNGLAEQGIEVYKEMKVA 200
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
D +T V L+A + GALD G+ ++FL +A++ MYA+
Sbjct: 201 KAVPDSMTFVATLSACAQAGALDLGREVERRIVSERMDISVFLGSALVNMYAR 253
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G+ + + EAL F +++ GV D+VTM +L A + GA L K L + ++
Sbjct: 179 MINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEK 238
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ ++ YA G I A +D ++ A+I G + G+ +ALE F
Sbjct: 239 IEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFH 298
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ V D +T V VLAA S G ++ G
Sbjct: 299 EMQMSEVKPDAITFVGVLAACSHAGLVNEG 328
Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
R+ +A + MI+G+ + + EAL F +++ GV D+VTM +L A + GAL+
Sbjct: 166 RMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALE 225
Query: 135 FGK------------SNIFLTTAIIEMYAK 152
GK ++ L TA+++MYAK
Sbjct: 226 LGKWLHVYIEKEKIEVDVALGTALVDMYAK 255
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RDP++ AMISGY+Q G EAL F ++ GV + V M+ VL+A + GALD G
Sbjct: 203 RDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWA 262
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K + L T ++++YAK
Sbjct: 263 HSYIERNKIKITVRLATTLVDLYAK 287
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MISGY+Q G EAL F ++ GV + V M+ VL+A + GA +I +
Sbjct: 211 MISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNK 270
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++I + L+ ++ YA G + A ++ + + ++G + G + L
Sbjct: 271 IKITVRLA----TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
E F ++ GV + VT V VL S G +D G+ +
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHF 364
>gi|302805727|ref|XP_002984614.1| hypothetical protein SELMODRAFT_16697 [Selaginella moellendorffii]
gi|300147596|gb|EFJ14259.1| hypothetical protein SELMODRAFT_16697 [Selaginella moellendorffii]
Length = 195
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 71/153 (46%), Gaps = 19/153 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+S ++Q G AL+ F ++ GVH DE+T V L + S + K I DLS+
Sbjct: 12 MVSAHAQHGDPRSALKLFRLMDLEGVHPDEITYVCALDSCSTLASPSTGK--IIHEDLSA 69
Query: 61 YSLSSKT--------SRYAHSGRIRLAR-------DP--VSCKAMISGYSQAGRFNEALE 103
L S + S YA G++ +R +P VS AMIS Y+Q G EA +
Sbjct: 70 DGLESASVVVTTALLSMYAKCGQLHRSRSLFDRIANPSGVSWNAMISAYAQNGHPVEAFD 129
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F + G D +T VL SS G+L+
Sbjct: 130 LFALMIQDGARVDHITFQCVLFGSSHAGSLEMA 162
Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D + AM+S ++Q G AL+ F ++ GVH DE+T V L + S + GK
Sbjct: 4 KDLAAWNAMVSAHAQHGDPRSALKLFRLMDLEGVHPDEITYVCALDSCSTLASPSTGKII 63
Query: 138 -----------SNIFLTTAIIEMYAK 152
+++ +TTA++ MYAK
Sbjct: 64 HEDLSADGLESASVVVTTALLSMYAK 89
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY+Q G++ +AL F +E + +EVT+ VL A + GA + + +++ +
Sbjct: 185 MISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGN 244
Query: 60 SYSLSSKTSR-----YAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
Y + S YA GRI A R+ S +MI G + GR +EA+E
Sbjct: 245 GYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIEL 304
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ G D+VT V VL A + G
Sbjct: 305 FYKMLREGAAPDDVTFVGVLLACTHGG 331
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 13/91 (14%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGAL 133
R+ AR+ S AMISGY+Q G++ +AL F + E + +EVT+ VL A + GAL
Sbjct: 172 RLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGAL 231
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
+ G+ N++++ A++EMYA+
Sbjct: 232 EVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
>gi|147834193|emb|CAN75306.1| hypothetical protein VITISV_040403 [Vitis vinifera]
Length = 826
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--- 57
MIS ++ + ALE F +++S +E+T V +L A S GA L + +Q
Sbjct: 362 MISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESIQAHATKAG 421
Query: 58 -LSSYSLSSK-TSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LS+ LSS Y GRI R D V +MI+GY G +EALE F
Sbjct: 422 YLSNAFLSSALIDLYCKFGRINQGRAIFNEIPTKDLVCWSSMINGYGLNGCGDEALETFS 481
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+ + GV +EV + VL+A S G
Sbjct: 482 NMLACGVKPNEVVFISVLSACSHCG 506
Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D +S AMIS ++ + ALE F +++S +E+T V +L A S GA + G+
Sbjct: 354 KDYISWSAMISVHAHSRHPYNALETFKQMQSTDERPNEITFVSLLQACSLIGAQELGESI 413
Query: 138 ----------SNIFLTTAIIEMYAKM 153
SN FL++A+I++Y K
Sbjct: 414 QAHATKAGYLSNAFLSSALIDLYCKF 439
Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V AM+S ++G++ EA E F ++ GV + V++V +L A + GAL FGK
Sbjct: 152 KDLVLWSAMVSACVKSGQYGEAFEIFRAMQYDGVEPNHVSIVSILPACANVGALLFGKEI 211
Query: 138 -----SNIF-----LTTAIIEMYAK 152
+F + ++++MYAK
Sbjct: 212 HGFSIKKMFHPLTNVHNSLVDMYAK 236
>gi|255575334|ref|XP_002528570.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532014|gb|EEF33825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 542
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAK-----ELQIE 55
+I+ SQ G+ EALE F +++ +GV + VT+ +L A A + K L+
Sbjct: 346 IIASCSQNGKDIEALELFREMQVVGVKPNAVTIPCLLPACGNIAALMHGKAAHCFSLKSG 405
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ + Y S+ YA GRI ++R + VS A+++GY+ G+ EA+ F
Sbjct: 406 ISSNVYVGSALVDMYAKCGRIHISRLCFDIMPTRNLVSWNALMAGYAMHGQTKEAISIFQ 465
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+++ G D V+ + VL+A S G + G S
Sbjct: 466 RMQRSGQKPDFVSFISVLSACSQGGKTNEGWS 497
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK----- 137
VS ++I+ SQ G+ EALE F +++ +GV + VT+ +L A AL GK
Sbjct: 341 VSWTSIIASCSQNGKDIEALELFREMQVVGVKPNAVTIPCLLPACGNIAALMHGKAAHCF 400
Query: 138 -------SNIFLTTAIIEMYAK 152
SN+++ +A+++MYAK
Sbjct: 401 SLKSGISSNVYVGSALVDMYAK 422
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WI--LAKELQ 53
M+SG++Q + EA+ F K++ GV TDE+T++ V++A + GA WI +A++ +
Sbjct: 250 MVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSE 309
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
S S+ Y+ G + A R+ S +MI G++ GR ++A++
Sbjct: 310 FGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKL 369
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ + + VT + VL A S G ++ G
Sbjct: 370 FDEMVKTEIKPNRVTFIGVLTACSHAGMVEQG 401
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 14/87 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF---- 135
+D V+ M+SG++Q + EA+ F K++ GV TDE+T++ V++A + GA +
Sbjct: 242 KDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWI 301
Query: 136 ----------GKSNIFLTTAIIEMYAK 152
GK ++ + +A+I+MY+K
Sbjct: 302 RDVAEKSEFGGKHSVVVGSALIDMYSK 328
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQI---EL 56
+I GY+Q GR +E L F ++ G V ++ TM +VL+A + GA+ K + L
Sbjct: 158 LIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETL 217
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ ++ K + Y G I +A RD +S MI+G + G EAL
Sbjct: 218 GYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNL 277
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++++ G+ D+VT V VL A G ++ G
Sbjct: 278 FHEMKNSGISPDKVTFVGVLCACKHMGLVEDG 309
>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Cucumis sativus]
Length = 721
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 67/160 (41%), Gaps = 30/160 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y Q G AL F + V EVT +L A + A +EL L
Sbjct: 320 IIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAA--------LELGLQV 371
Query: 61 YSLSSKT-------------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
+ L++KT YA G I+ AR D VS A+I GYS G
Sbjct: 372 HCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLG 431
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
EA++ F ++ DE+T V VL+A S G LD GK
Sbjct: 432 VEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQ 471
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+I GY+Q+ +F EA E F +L G + VL + G + L++
Sbjct: 17 LIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKVG 76
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+++ ++ Y+ SG + +AR D VS MI+ Y++ F+EALE F
Sbjct: 77 YGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFS 136
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ G + T VL A G D GK+ ++++ ++E+Y +
Sbjct: 137 QMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTR 194
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+ Y++ F+EALE F ++ G + T VL A G + K + + ++
Sbjct: 118 MIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTN 177
Query: 61 YSLSSKTSRYAHSGRIRL------------------ARDPVSCKAMISGYSQAGRFNEAL 102
Y + Y G + L D + MIS ++Q+G+ +AL
Sbjct: 178 Y----ERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKAL 233
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMY 150
E F ++ V ++ T VL AS+ +LD K +++F++ A++ Y
Sbjct: 234 EIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACY 293
Query: 151 AK 152
AK
Sbjct: 294 AK 295
>gi|356501914|ref|XP_003519768.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02750-like [Glycine max]
Length = 627
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MISG++Q G EA + FG+++S+GV + +L+A + KE L+ +
Sbjct: 351 MISGFAQLGECGEAFKYFGQMQSVGVAPCLKIVTSLLSACADSSMLQHGKEIHGLSLRTD 410
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALEP 104
++ + +++ Y G AR DP AMI GY + G + A E
Sbjct: 411 INRDDFLVTALVDMYMKCGLASWARGVFDQYDAKPDDPAFWNAMIGGYGRNGDYESAFEI 470
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++ V + T V VL+A S G +D G
Sbjct: 471 FDEMLEEMVRPNSATFVSVLSACSHTGQVDRG 502
Score = 45.4 bits (106), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ YS+ G + A E F GV + ++ T +S +L KE + +D+
Sbjct: 283 LVDMYSKCGFWRSAFEVF-----TGVEGNRRNLI---TWNSMIAGMMLNKESERAVDM-- 332
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
R G L D + +MISG++Q G EA + FG+++S+GV +
Sbjct: 333 ------FQRLESEG---LKPDSATWNSMISGFAQLGECGEAFKYFGQMQSVGVAPCLKIV 383
Query: 121 VVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+L+A + L GK + FL TA+++MY K
Sbjct: 384 TSLLSACADSSMLQHGKEIHGLSLRTDINRDDFLVTALVDMYMK 427
Score = 40.0 bits (92), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 32/181 (17%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-----TASSGPGAWILAKELQIEL 56
+SG+S+ GR EAL F + + + VT+ +L A+ A +L +E
Sbjct: 111 LSGFSRNGRRGEALRVFRRAGLGPLRPNSVTIACMLGVPRVGANHVEMMHCCAVKLGVEF 170
Query: 57 DLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
D +Y +S + Y G + A + VS A +SG Q G L+ F +
Sbjct: 171 D--AYVATSLVTAYCKCGEVVSASKVFEELPVKSVVSYNAFVSGLLQNGVPRLVLDVFKE 228
Query: 108 L----ESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYA 151
+ E + + VT+V VL+A ++ FG+ + + TA+++MY+
Sbjct: 229 MMRGEECVECKLNSVTLVSVLSACGSLQSIRFGRQVHGVVVKLEAGDGVMVMTALVDMYS 288
Query: 152 K 152
K
Sbjct: 289 K 289
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 16/147 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MISGY+Q G++ +AL F +E + +EVT+ VL A + GA + + +++ +
Sbjct: 185 MISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGN 244
Query: 60 SYSLSSKTSR-----YAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEP 104
Y + S YA GRI A R+ S +MI G + GR +EA+E
Sbjct: 245 GYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIEL 304
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ G D+VT V VL A + G
Sbjct: 305 FYKMLREGAAPDDVTFVGVLLACTHGG 331
Score = 52.0 bits (123), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 13/91 (14%)
Query: 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGAL 133
R+ AR+ S AMISGY+Q G++ +AL F + E + +EVT+ VL A + GAL
Sbjct: 172 RLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGAL 231
Query: 134 DFGK------------SNIFLTTAIIEMYAK 152
+ G+ N++++ A++EMYA+
Sbjct: 232 EVGERIEVYARGNGYFKNLYVSNALLEMYAR 262
>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74600, chloroplastic; Flags: Precursor
gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 895
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-ASSGP----GAWILAKELQIE 55
MISG+++ G EA+ F ++ G DE T+ VLT SS P G I L+
Sbjct: 522 MISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAG 581
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D S+ + Y+ G ++LAR DPVSC ++ISGYSQ G + F
Sbjct: 582 IDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFR 641
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ G D + +L A++
Sbjct: 642 DMVMSGFTMDSFAISSILKAAA 663
Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
+ISGYSQ G + F + G D + +L A+ S GA + A +I
Sbjct: 623 LISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIG 682
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L SS + Y+ G I D ++ A+I+ Y+Q G+ NEAL+ +
Sbjct: 683 LCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYN 742
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD 134
++ G D+VT V VL+A S G ++
Sbjct: 743 LMKEKGFKPDKVTFVGVLSACSHGGLVE 770
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG------AWILAKELQI 54
MI+ +SQ+ + +A+ F ++ G+ TDE ++ +L+ + L L +
Sbjct: 424 MITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVL 483
Query: 55 ELDLSS--YSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+L + S ++L SK S ++ +D +MISG+++ G EA+ F ++
Sbjct: 484 DLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEML 543
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G DE T+ VL S +L GK + L +A++ MY+K
Sbjct: 544 DDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSK 598
Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
MISGY Q F E+L F K+ LG +E++ V++A S A + ++ + I++
Sbjct: 121 MISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMG 180
Query: 58 LSSYSLS--------SKTSRYAHSGRIRLARDPVS----C-KAMISGYSQAGRFNEALEP 104
Y + SK R+ + ++ RD +S C +I+G + + +
Sbjct: 181 YFFYEVVESALIDVFSKNLRFEDAYKV--FRDSLSANVYCWNTIIAGALRNQNYGAVFDL 238
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
F ++ D T VLAA + L FGK ++F+ TAI+++YAK
Sbjct: 239 FHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAK 297
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+++ ALE F ++ GV + T+ V++A P A ++ + S
Sbjct: 322 MLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSG 381
Query: 61 YSLSSKT-----SRYAHSGRIRLAR------DPVS----CKAMISGYSQAGRFNEALEPF 105
+ L S S Y+ SG I L+ D + MI+ +SQ+ + +A+ F
Sbjct: 382 FYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLF 441
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ TDE ++ +L+ L+ GK
Sbjct: 442 TRMLQEGLRTDEFSVCSLLSVLD---CLNLGK 470
Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
D VSC MISGY Q F E+L F K+ LG +E++ V++A S
Sbjct: 114 DVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSA 162
>gi|302142629|emb|CBI19832.3| unnamed protein product [Vitis vinifera]
Length = 544
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 69/173 (39%), Gaps = 42/173 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------AWILAKE 51
MISGY G F EALE F K+ LG+ DE T VL+A + G A+IL E
Sbjct: 260 MISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTE 319
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR------------------------------- 80
+ LD S ++ + Y G++ AR
Sbjct: 320 PRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYAAHCLFLTMP 379
Query: 81 --DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
D VS AMI+ Q G +ALE F + + D +T + VL+ S G
Sbjct: 380 YLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAG 432
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 31/56 (55%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
V+ AMISGY G F EALE F K+ LG+ DE T VL+A + G GK
Sbjct: 255 VAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQ 310
>gi|357520897|ref|XP_003630737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524759|gb|AET05213.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 447
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 77/181 (42%), Gaps = 34/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG SQ G +A+ F ++ G D +TMV V++A G +L + L L
Sbjct: 169 LISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMSACGSIG------DLYLALQLHK 222
Query: 61 YSLSSKTSR-------------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
Y +KT+ Y GR+ LA R+ S +MI GY+ G
Sbjct: 223 YVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHA 282
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAK 152
EAL F + GV + VT + VL+A G + G+ NI+ T ++ Y
Sbjct: 283 KEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGC 342
Query: 153 M 153
M
Sbjct: 343 M 343
Score = 42.4 bits (98), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I Y++ AL + + GV D T+ +VL A S A L +++ I+L
Sbjct: 68 IIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLG 127
Query: 58 LSS--YSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
L S Y S + Y +G A S A+ISG SQ G +A+ F
Sbjct: 128 LQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFV 187
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDF----------GKSN----IFLTTAIIEMYAK 152
++ G D +TMV V++A G L K+N I ++ ++I+MY K
Sbjct: 188 DMKRHGFEPDGITMVSVMSACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGK 247
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY Q G E++ F + G D T+V +L++ S GA L D +
Sbjct: 197 LISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNG 256
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L +S + Y G + AR + V+ AMISGY G +A+E F
Sbjct: 257 FDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFT 316
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + G + +T V VL+A + G +D G+
Sbjct: 317 EMRAYGPRPNNITFVAVLSACAHSGLIDDGR 347
Score = 43.1 bits (100), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R ++ ++ISGY Q G E++ F + G D T+V +L++ S GALDFG
Sbjct: 189 RTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 248
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T++I MY +
Sbjct: 249 HDYADGNGFDLNVVLGTSLINMYTR 273
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 24/177 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLTASSGPGA-----WILAKEL 52
+++GY AGR EAL F ++ S VH + TM +L A +G G W+ A
Sbjct: 219 VMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACAGAGCLETGIWVHAYIE 278
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEAL 102
+ ++ Y Y G I A RD S +I G + GR +AL
Sbjct: 279 RNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKAPRKRDLFSWTTVICGLAMHGRATDAL 338
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI------FLTTAIIEMYAKM 153
F ++ G+ D+VT+V VL A + G +D G F T IE Y M
Sbjct: 339 RMFDMMQDNGICPDDVTLVGVLNACAHGGLVDEGLGYFYSMEAKFRITPKIEHYGCM 395
Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 85/216 (39%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL----AKELQ--- 53
M + +G+ +A+ FG + + GV D V + V L A G G+W K++
Sbjct: 83 MARAHVASGQAAQAIAVFGDMVADGVFPDNVALAVALGACHGAGSWTARRNPGKKIHALI 142
Query: 54 ----IELDL-----------------------------SSYSLSSKTSRYAHSGRIRLA- 79
IE D+ S+ + ++ +YA G++ A
Sbjct: 143 VTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQYARHGKVDTAY 202
Query: 80 --------RDPVSCKAMISGYSQAGRFNEALEPFGKL---ESLGVHTDEVTMVVVLAASS 128
RD VS +++GY AGR EAL F ++ S VH + TM +L A +
Sbjct: 203 ELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMSTILGACA 262
Query: 129 GPGALDFG------------KSNIFLTTAIIEMYAK 152
G G L+ G + +L +I+MY K
Sbjct: 263 GAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCK 298
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
M GY++ A F ++ G+ D+ T +L A + A ++L I+L
Sbjct: 92 MARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLG 151
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR-------DP--VSCKAMISGYSQAGRFNEALEPFG 106
LS Y + + Y + AR +P V+ AMI+GY++ R NEAL F
Sbjct: 152 LSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFR 211
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------KSNIF-----LTTAIIEMYAK 152
+L++ + +VTM+ VL++ + GALD G K N F + TA+I+MYAK
Sbjct: 212 ELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAK 269
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY++ R NEAL F +L++ + +VTM+ VL++ + GA L K + + +
Sbjct: 193 MITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNG 252
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ K YA G + A RD + AMI Y+ G +A+ F
Sbjct: 253 FNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFK 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G DE+T + +L A S G ++ G
Sbjct: 313 EMRKAGTEPDEITFLGLLYACSHTGLVEEG 342
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
+I+ Y+Q G E++E F ++ G ++ + VT+ VL A + G+ L K + I++
Sbjct: 179 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 238
Query: 57 DLSS--YSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
L S + +S Y G++ +AR S AM++GY G EALE F
Sbjct: 239 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 298
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ GV + +T V VLAA S G L+ G
Sbjct: 299 YEMNMAGVKPNYITFVSVLAACSHAGLLEEG 329
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFGK- 137
RD +S ++I+ Y+Q G E++E F ++ G ++ + VT+ VL A + G+ GK
Sbjct: 171 RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKC 230
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN+F+ T+II+MY K
Sbjct: 231 IHDQVIKMGLESNVFVGTSIIDMYCK 256
>gi|242053799|ref|XP_002456045.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
gi|241928020|gb|EES01165.1| hypothetical protein SORBIDRAFT_03g029460 [Sorghum bicolor]
Length = 615
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MIS ++Q G +++AL ++++ G+ ++VT++ +L+A + G W+ + +
Sbjct: 193 MISAFAQCGMWDDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGRWVYGQLSEYG 252
Query: 56 LDLSSYSLSSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + +S S YA G R R S +I G+ Q R EAL F
Sbjct: 253 IEPDADIGNSAISMYAKCGCMSDALQVFRTMPVRSTKSWNILIDGFVQNQRHKEALTVFQ 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S G+ D VT+ VL+A + G L + LT ++I YAK
Sbjct: 313 EMISTGLTPDAVTLASVLSACAQLGDLQQARDVHNYIKNHGIHCGTLLTNSLINTYAK 370
Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW----------ILAK 50
MI GY+ G ++AL F + GV D TM ++AS+ W + +
Sbjct: 89 MIRGYTNHGAPSDALATFRAMLWRGVSPDSYTMAAAVSASAAFANWQWRATGDAVHAMVR 148
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRIRLA------------RDPVSCKAMISGYSQAGRF 98
++ DL + +S + Y G R A RD VS +MIS ++Q G +
Sbjct: 149 KIGCASDL--FVMSGLVNLY---GTFRSAEDARKVFVEMHERDVVSWTSMISAFAQCGMW 203
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++AL ++++ G+ ++VT++ +L+A +D G+
Sbjct: 204 DDALRFLAEMQADGISPNKVTVISLLSACGHTQTVDKGR 242
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISGY Q G E++ F + G D T+V +L++ S GA L D +
Sbjct: 261 LISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNG 320
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ L +S + Y G + AR + V+ AMISGY G +A+E F
Sbjct: 321 FDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFT 380
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ + G + +T V VL+A + G +D G+
Sbjct: 381 EMRAYGPRPNNITFVAVLSACAHSGLIDDGR 411
Score = 43.1 bits (100), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R ++ ++ISGY Q G E++ F + G D T+V +L++ S GALDFG
Sbjct: 253 RTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWL 312
Query: 137 ---------KSNIFLTTAIIEMYAK 152
N+ L T++I MY +
Sbjct: 313 HDYADGNGFDLNVVLGTSLINMYTR 337
>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
Length = 1817
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG------PGAWILAKELQI 54
+ISG+S+ GR EA+ F ++ + + VT V ++A +G A + A +++
Sbjct: 1388 IISGFSKNGRGKEAILFFKEMLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKL 1447
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ +S Y+ GRI A RD + +MISGYSQ EAL+ F
Sbjct: 1448 GFGVKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLF 1507
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + G+ + T+ +L A L G+ SN+F+ +A+++MY+K
Sbjct: 1508 VZMRNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSK 1566
Score = 45.1 bits (105), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 69/153 (45%), Gaps = 19/153 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGYSQ EAL+ F ++ + G+ + T+ +L A IL + Q+
Sbjct: 1490 MISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILNACGSLT--ILQQGRQVHSLVAK 1547
Query: 57 ---DLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ + + +S+ Y+ G I AR + V +MI+GY+Q+GR E L
Sbjct: 1548 MGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGL 1607
Query: 105 FGKL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +L G D + VL A + G LD G
Sbjct: 1608 FERLVXEEGFTPDHICFTAVLTACNHAGFLDKG 1640
Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 13 EALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIELDLSSYSLSSKT 67
EALE F ++ + G + + L + + G G I A+ +Q + + + S+
Sbjct: 1299 EALESFXRMNTSGTKPTKFILCTALNSCAKLLNWGLGVQIHARIIQTGFEDNLFLNSALV 1358
Query: 68 SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118
YA I A+ D VS ++ISG+S+ GR EA+ F ++ + + V
Sbjct: 1359 DLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKEMLGSQIKPNCV 1418
Query: 119 TMVVVLAASSGPGA--------------LDFGKSNIFLTTAIIEMYAK 152
T V ++A +G L FG F+ + +I+ Y+K
Sbjct: 1419 TYVSXISACTGLETIFDQCALLHAHVVKLGFG-VKTFVVSCLIDCYSK 1465
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY + GR EAL F +++ GV EVT+V VLTA + GA W+ +
Sbjct: 227 MLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRG 286
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S ++ Y+ G + ++ R+ + + +SG + G E LE F
Sbjct: 287 MRVSVTLGTALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFK 346
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ES G+ + VT V VL S G ++ G++
Sbjct: 347 RMESAGMEPNGVTFVAVLRGCSVAGLVEEGRA 378
Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD V+ AM++GY + GR EAL F +++ GV EVT+V VL A + GAL+ G
Sbjct: 219 RDHVAWNAMLTGYVRVGRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWV 278
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ ++ L TA+++MY+K
Sbjct: 279 HSYVCSRGMRVSVTLGTALVDMYSK 303
>gi|255560231|ref|XP_002521133.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539702|gb|EEF41284.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 274
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 38/190 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDE--VTMVVVLTASSG--PGAWILAKELQIEL 56
++ ++ R E + G + L + DE + +V + G A +L ++ E
Sbjct: 17 VLKACAKTARLQEGKQVHGYVIKLRLDNDEFVASNLVRMYVMCGVMEDARVLFRKHVFEY 76
Query: 57 DLSSYSLSSKTSR-------------YAHSGRIRLARD---------PVSCKAMISGYSQ 94
D+ S S S K R Y G + ++RD VS MISGY+Q
Sbjct: 77 DICSKSTSDKRKREGIVVLWNVMIDGYVRLGDLAVSRDLFDNMPYRTVVSWNVMISGYAQ 136
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFL 142
G F EA+E F ++ + + VT+V VL A S GAL+ GK N L
Sbjct: 137 NGYFKEAIELFHDMQMDDMSPNYVTLVSVLPAISRLGALELGKWVHLYAEKNNIEVNDVL 196
Query: 143 TTAIIEMYAK 152
+A+I+MY+K
Sbjct: 197 GSALIDMYSK 206
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
+I+ Y+Q G E++E F ++ G ++ + VT+ VL A + G+ L K + I++
Sbjct: 333 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 392
Query: 57 DLSS--YSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPF 105
L S + +S Y G++ +AR S AM++GY G EALE F
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 452
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ GV + +T V VLAA S G L+ G
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEG 483
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 43/191 (22%)
Query: 1 MISGYSQAGRFNEALEPFGK--LESLG------VHTDEVTMVVVLTASS---------GP 43
MI+GY Q + AL F + +E G V D + MV VL+A S G
Sbjct: 224 MITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGV 283
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQ 94
+++ + + +L + + + + YA G + ++R D +S ++I+ Y+Q
Sbjct: 284 HGFLIKRGFEGDLGVENTLMDA----YAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQ 339
Query: 95 AGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFGK------------SNIF 141
G E++E F ++ G ++ + VT+ VL A + G+ GK SN+F
Sbjct: 340 NGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVF 399
Query: 142 LTTAIIEMYAK 152
+ T+II+MY K
Sbjct: 400 VGTSIIDMYCK 410
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY+Q F++A+E F L+S GV +E MV V+++ + GA L + + +
Sbjct: 222 MISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNG 281
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+L ++ YA G I A RD +S A+I+G + G +L+ F
Sbjct: 282 MTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFA 341
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ G+ ++T VL+A S G ++ G
Sbjct: 342 TMVEAGLTPRDITFTAVLSACSHGGLVERG 371
Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
++ V+ MISGY+Q F++A+E F L+S GV +E MV V+++ + GAL+ G+
Sbjct: 214 KNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELGERA 273
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ L TA+++MYA+
Sbjct: 274 HDYVVKNGMTLNLILGTALVDMYAR 298
>gi|357453189|ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 316
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y F E L F ++ D T+ +VL + +G A L K++ + ++
Sbjct: 80 LIRAYLSLNLFKETLSIFREMRLSYKPFDCHTLPLVLKSCAGLSALRLGKQVHGAVLVNG 139
Query: 61 YSLSSKTSR-----YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++L K S YA G + AR + V+ M++GY GRF E E F
Sbjct: 140 FALDLKNSNALINMYAKCGELEFARKVFDGMCERNEVTWSTMMAGYGMHGRFEEVFEMFN 199
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ +G D V+ VVL A S G ++ G+
Sbjct: 200 RMVEVGERMDNVSFTVVLTACSHGGFVEKGR 230
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQI---EL 56
+I GY+Q GR +E L F ++ G V ++ TM +VL+A + GA+ K + L
Sbjct: 105 LIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETL 164
Query: 57 DLSSYSLSSKTS---RYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ ++ K + Y G I +A RD +S MI+G + G EAL
Sbjct: 165 GYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNL 224
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F ++++ G+ D+VT V VL A G ++ G
Sbjct: 225 FHEMKNSGISPDKVTFVGVLCACKHMGLVEDG 256
>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g25970-like [Glycine max]
Length = 703
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+++GY Q G +AL F ++ L + D T V+ + S L ++ L++
Sbjct: 371 ILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLALKVG 430
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
D +SY SS Y+ G I AR + + ++I GY+Q G+ N AL+ F
Sbjct: 431 FDTNSYVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFY 490
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
++ V D +T V VL A S G ++ G + I
Sbjct: 491 MMKERKVKLDHITFVAVLTACSHNGLVEEGCNFI 524
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---- 54
MI G++Q G N+AL+ F ++ E GV + T+ +L A + A + K++
Sbjct: 485 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 544
Query: 55 --ELDLSSYSLSSK-TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
+ S+Y +++ Y+ G + AR +S +M++GY GR +EAL
Sbjct: 545 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 604
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ F K+ G D++T +VVL A S G +D G S
Sbjct: 605 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 640
Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG----ALDF 135
+D VS AM++GYSQ+G F A E F + + D VT V+A S G AL+
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 388
Query: 136 GKSNIF 141
+ IF
Sbjct: 389 FRQMIF 394
Score = 38.5 bits (88), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y++ G A++ F +E D V+ ++ S G + A EL
Sbjct: 306 LIDAYAKCGLMENAVKVFNMME----FKDVVSWNAMVAGYSQSGNFEAAFEL-------- 353
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + + + D V+ A+I+GYSQ G +EAL F ++ G + VT+
Sbjct: 354 ---------FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTI 404
Query: 121 VVVLAASSGPGAL--------------------DFG--KSNIFLTTAIIEMYAK 152
+ VL+A + GA DFG ++ + A+I+MY+K
Sbjct: 405 ISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 458
>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
Length = 655
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 23/156 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----------AWILAK 50
M++ YSQA EA+ F + + GV + T+V VL+A + G A+I++
Sbjct: 336 MVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSH 395
Query: 51 ELQIELDLSSYSLSSKTSRYAHSGRI----RLARD-----PVSCKAMISGYSQAGRFNEA 101
++++ ++LS+ + +A G + RL R+ VS MI ++ G+ EA
Sbjct: 396 KVELTVNLSN----AFIDMFAKCGDVGAASRLFRNMEDKNVVSWNTMIVAHALHGQSEEA 451
Query: 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L F K +++G+ DE+T + VL+A S G + G+
Sbjct: 452 LHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGR 487
Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 22/114 (19%)
Query: 61 YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
YS +S S YA G + A R+ VS M++ YSQA EA+ F + +
Sbjct: 300 YSWTSMVSAYAKCGDLENAGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAA 359
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
GV + T+V VL+A + G LD G+ + L+ A I+M+AK
Sbjct: 360 GVEPIDATLVSVLSACAQLGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAK 413
>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
Length = 917
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G ++ G EA++ F +++ GV D+++ V VL A SG L + +E +S
Sbjct: 674 MIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISD 733
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ T S + SGR+ A RD S +++ ++Q G +AL+
Sbjct: 734 QGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKL 793
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ D +T+V VL+A S G ++ G
Sbjct: 794 FRRMQQESSRPDSITLVSVLSACSHGGLIEEG 825
Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL----TASSGPGAWILAKELQIELD- 57
+ Y Q ++ EAL+ F +++ G+ D+V+ V VL +AS G + E +E D
Sbjct: 578 AAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGRKIHNILLETGMESDH 637
Query: 58 ------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
L+ Y+ S + RD VS AMI+G ++ G EA++ F +++
Sbjct: 638 IVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLE 697
Query: 112 GVHTDEVTMVVVLAASSG 129
GV D+++ V VL A SG
Sbjct: 698 GVAPDKISFVTVLNAFSG 715
Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGP-----GAWILAKELQI 54
+++ +Q G EAL F +++ G+ D+VT + +L A S P G + LQ
Sbjct: 276 IVAACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQC 335
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
D + + Y+ GRI A RD +S +ISG++QAG +EA+ F
Sbjct: 336 GYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLF 395
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + G+ D+ T + ++ G + K ++FL +A+I M+++
Sbjct: 396 RRMLAEGITPDKFTFISII---DGTARMQEAKILSELMVESGVELDVFLVSALINMHSR 451
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE--LDL 58
+ISG++QAG +EA+ F ++ + G+ D+ T + ++ ++ + EL +E ++L
Sbjct: 378 IISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEAKILSELMVESGVEL 437
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ +S+ + ++ G +R AR D V ++IS Y Q G ++AL +
Sbjct: 438 DVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMR 497
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G+ ++ T+V L A + AL GK ++ + A+I MYAK
Sbjct: 498 LEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERGFAASPAVGNALINMYAK 552
Score = 38.1 bits (87), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 22/172 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+IS Y Q G ++AL + G+ ++ T+V L A + G I A ++
Sbjct: 476 IISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIERG 535
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
S ++ + YA G + + ++ VS + + Y Q ++ EAL+ F +
Sbjct: 536 FAASPAVGNALINMYAKCGCLEEADRVFHQCGKNLVSWNTIAAAYVQRDKWREALQLFQE 595
Query: 108 LESLGVHTDEVTMVVVLAASSGPGA--------LDFG-KSNIFLTTAIIEMY 150
++ G+ D+V+ V VL S L+ G +S+ ++TA++ MY
Sbjct: 596 MQLEGLKADKVSFVTVLNGCSSASEGRKIHNILLETGMESDHIVSTALLNMY 647
>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g77010, mitochondrial-like [Vitis vinifera]
Length = 685
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI G+SQ EAL+ F ++ LG+ D+ ++ V++A + G I A+ I
Sbjct: 408 MIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIG 467
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S Y G + R D V +M+ GY+ G EAL F
Sbjct: 468 LEFDQIISTSLVDFYCKCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFD 527
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ S+GV ++T V VL+A G ++ G+
Sbjct: 528 QMRSVGVQPTDITFVGVLSACDHCGLVEEGR 558
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 50/194 (25%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
MISGY EALE F + GV D T VL+A S G I+ + +Q+
Sbjct: 276 MISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLG--IIDQGIQVHAHVYK 333
Query: 57 -------------------------------DLSSYS---LSSKTSRYAHSGRIRLARDP 82
DL +Y L+S + Y++ GRI AR
Sbjct: 334 VGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNCGRIDDARQI 393
Query: 83 ---------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
+S +MI G+SQ EAL+ F ++ LG+ D+ ++ V++A + +L
Sbjct: 394 FDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVISACASISSL 453
Query: 134 DFGKSNIFLTTAII 147
+ G+ IF II
Sbjct: 454 ELGEQ-IFARATII 466
Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 21/115 (18%)
Query: 59 SSYSLSSKTSRYAHSGRIRLARDPVSCKA---------MISGYSQAGRFNEALEPFGKLE 109
++SLS+ S YA GR+ AR K+ MISGY EALE F +
Sbjct: 238 DAFSLSALISGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMR 297
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
GV D T VL+A S G +D G ++I + +A+++MY+K
Sbjct: 298 RKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKVGFTNDIIIDSALVDMYSK 352
>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Glycine max]
Length = 705
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++Q RF EAL F + S +E + L+A +G + ++ + S
Sbjct: 122 MVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSR 181
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y L S+ Y+ G + A R+ VS ++I+ Y Q G +ALE F
Sbjct: 182 YLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFV 241
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYAK 152
+ GV DE+T+ V++A + A+ G ++++ L A+++MYAK
Sbjct: 242 MMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300
Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EA+ F L+ + T +L A + L ++ ++
Sbjct: 356 LIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHG 415
Query: 61 YSL-----------SSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNE 100
+ +S Y G + + RD VS AMI GY+Q G
Sbjct: 416 FWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTN 475
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ALE F K+ G D VTM+ VL+A S G ++ G+
Sbjct: 476 ALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGR 512
Score = 40.8 bits (94), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG---- 136
D S AM+SG++Q RF EAL F + S +E + L+A +G L+ G
Sbjct: 115 DQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIH 174
Query: 137 ----KS----NIFLTTAIIEMYAK 152
KS ++++ +A+++MY+K
Sbjct: 175 ALISKSRYLLDVYMGSALVDMYSK 198
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 14/167 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY Q F+EA+ F +++ V D+ +V +LT + GA WI +
Sbjct: 60 MINGYVQFNHFDEAVALFQEMQIQRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKG 119
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + + +S Y+ G I A +D + ++I G + G+ ++ALE F
Sbjct: 120 IPVDAVVGTSLIEMYSKCGCIEKALRIFCGLREKDTATWTSIICGLAMNGKTSKALELFS 179
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAKM 153
K++ + DEVT + VL+A S G ++ G+ T+I + K+
Sbjct: 180 KMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKL 226
Score = 41.6 bits (96), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 21/110 (19%)
Query: 64 SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114
+S S Y + G + AR D V AMI+GY Q F+EA+ F +++ V
Sbjct: 27 TSMVSGYVNYGELDKARELFERSPVKDVVLWTAMINGYVQFNHFDEAVALFQEMQIQRVK 86
Query: 115 TDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
D+ +V +L + GAL+ G + + T++IEMY+K
Sbjct: 87 PDKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIEMYSK 136
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 77/156 (49%), Gaps = 18/156 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---- 54
MI G++Q G N+AL+ F ++ E GV + T+ +L A + A + K++
Sbjct: 492 MIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLR 551
Query: 55 --ELDLSSYSLSSK-TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEAL 102
+ S+Y +++ Y+ G + AR +S +M++GY GR +EAL
Sbjct: 552 HHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEAL 611
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ F K+ G D++T +VVL A S G +D G S
Sbjct: 612 DIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLS 647
Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG----ALDF 135
+D VS AM++GYSQ+G F A E F + + D VT V+A S G AL+
Sbjct: 336 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 395
Query: 136 GKSNIF 141
+ IF
Sbjct: 396 FRQMIF 401
Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 43/174 (24%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I Y++ G A++ F +E D V+ ++ S G + A EL
Sbjct: 313 LIDAYAKCGLMENAVKVFNMME----FKDVVSWNAMVAGYSQSGNFEAAFEL-------- 360
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + + + D V+ A+I+GYSQ G +EAL F ++ G + VT+
Sbjct: 361 ---------FKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTI 411
Query: 121 VVVLAASSGPGAL--------------------DFG--KSNIFLTTAIIEMYAK 152
+ VL+A + GA DFG ++ + A+I+MY+K
Sbjct: 412 ISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 465
>gi|302808820|ref|XP_002986104.1| hypothetical protein SELMODRAFT_22638 [Selaginella moellendorffii]
gi|300146252|gb|EFJ12923.1| hypothetical protein SELMODRAFT_22638 [Selaginella moellendorffii]
Length = 376
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---------ILAKE 51
MI+ Y Q G EA+ F +++ G+ D++T V V+ ++A+
Sbjct: 130 MIAAYGQNGVGGEAIRLFQEMDVEGIPADDITFVSVIDVCGSVADLRVGELVHEEVVARG 189
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
L+ E+ L + + + Y G + AR D + +MI+ Y+QAGR ++L
Sbjct: 190 LETEMALGN----ALVTMYGRCGVLDTARLLFDEMAGKDTWTWNSMITAYAQAGREVQSL 245
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT-------TAIIEMYAKM 153
E + ++ GV DEVT V +L+A S G L+ F T T I++ Y M
Sbjct: 246 ELWRAMQLQGVDVDEVTFVGILSACSHGGILEHCGICYFGTMLGDYGITPIVDHYICM 303
Score = 42.0 bits (97), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 29/177 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD-LS 59
+++ Y+Q G A F K+ + VT +L A + G A+EL +D
Sbjct: 34 LVTAYAQNGHLARATSLFAKMPE----RNTVTCNAMLAAYASHGDMDAARELYDRMDERD 89
Query: 60 SYSLSSKTSRYAHS---GRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGK 107
+ + S+ S YA + G + AR V+ AMI+ Y Q G EA+ F +
Sbjct: 90 AVTWSTMISGYARAWDAGYVADARRMFDDMPIRSAVTWNAMIAAYGQNGVGGEAIRLFQE 149
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
++ G+ D++T V V+ L G ++ + L A++ MY +
Sbjct: 150 MDVEGIPADDITFVSVIDVCGSVADLRVGELVHEEVVARGLETEMALGNALVTMYGR 206
>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
lyrata]
Length = 1217
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 14/143 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI Y G + E ++ FG + S V D T VL A S G ++ K++ ++
Sbjct: 112 MIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVG 171
Query: 58 LSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LSS + + S Y G + AR D VS ++++GY+Q RF++ALE
Sbjct: 172 LSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCR 231
Query: 107 KLESLGVHTDEVTMVVVLAASSG 129
++ES+ + D TM +L A S
Sbjct: 232 EMESVKISHDAGTMASLLPAVSN 254
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+++GY+Q RF++ALE ++ES+ + D TM +L A S
Sbjct: 213 LVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVS------------------- 253
Query: 61 YSLSSKTSRYAHSGRIRLARDP-VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119
+ +++ Y ++ + VS MI Y + EA+E + +E+ G D V+
Sbjct: 254 -NTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVS 312
Query: 120 MVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ VL A AL GK N+ L A+I+MYAK
Sbjct: 313 ITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAK 357
Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 72/158 (45%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ--IELDL 58
MI Y + EA+E + +E+ G D V++ VL A A L K++ IE
Sbjct: 281 MIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKK 340
Query: 59 SSYSL---SSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFG 106
+L ++ YA G + ARD VS AMIS Y +GR +A+ F
Sbjct: 341 LIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFS 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
K++ G+ D + V LAA S G L+ G+S L T
Sbjct: 401 KMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMT 438
Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ + MI Y G + E ++ FG + S V D T VL A S G + GK
Sbjct: 104 RNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKI 163
Query: 138 ----------SNIFLTTAIIEMYAK 152
S +F+ ++ MY K
Sbjct: 164 HGSATKVGLSSTLFVGNGLVSMYGK 188
>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 721
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASSG---PGAWILAKELQIEL 56
MISGYS +E A++ F +++ +G D+ + V V +A S P L I+
Sbjct: 315 MISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKS 374
Query: 57 DLSSYSLSSKT---SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S +S S Y SG ++ AR + VS MI GY+Q G EAL
Sbjct: 375 HIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLL 434
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ ++ G+ +++T V VL+A + G +D G+
Sbjct: 435 YQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQ 467
>gi|413925923|gb|AFW65855.1| hypothetical protein ZEAMMB73_620530 [Zea mays]
Length = 501
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 14/148 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
MI+GY +GR +AL+ F ++ G+ D T+V +LTA + GA + L ++
Sbjct: 341 MITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRI 400
Query: 59 ---SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ Y GR+ A RD + AMI+G + G +ALE F
Sbjct: 401 VEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFC 460
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD 134
+++ G VT + VL A S LD
Sbjct: 461 QMKRDGFQPTSVTYIAVLTACSHSSLLD 488
Score = 53.9 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 60/211 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------------GPGA 45
+I+GYS+AGR +A+ F + S GV DEV ++ L+A S G
Sbjct: 208 LIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKR 267
Query: 46 WILAKELQIELDLSSYSLSSKTSR-----------------------YAHSGRIRLAR-- 80
+ L + L + Y+ ++ Y G + +AR
Sbjct: 268 IRMTDNLVVAL-IDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSL 326
Query: 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
D ++ +MI+GY +GR +AL+ F ++ G+ D T+V +L A + GAL
Sbjct: 327 FDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGAL 386
Query: 134 DFGKS------------NIFLTTAIIEMYAK 152
G++ +++L TA+++MY K
Sbjct: 387 PHGRALHASIEQRIVEEDVYLGTALLDMYMK 417
Score = 39.7 bits (91), Expect = 0.43, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS--------GPG 131
R+ VS ++I+GYS+AGR +A+ F + S GV DEV ++ L+A S
Sbjct: 200 RNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLL 259
Query: 132 ALDFGKSNIFLT----TAIIEMYAK 152
L G+ I +T A+I+MYAK
Sbjct: 260 HLLVGQKRIRMTDNLVVALIDMYAK 284
>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
chloroplastic-like [Vitis vinifera]
Length = 872
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
MISGY + E L F + V D +TM V++A G L +E+
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG 326
Query: 53 ---QIELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ S + S + + + +D VS AMISGY + G +A+E +
Sbjct: 327 FVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYT 386
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E GV DE+T+ VL+A +G G LD G S + + ++I+MY+K
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSK 444
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIELDLS 59
++ GY++AG F+EAL + ++ +G+ D T VL G P LA+ ++ L +
Sbjct: 166 LVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD---LARGREVHLHVI 222
Query: 60 SYSLSSKT-------SRYAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALE 103
Y S + Y G I RL RD +S AMISGY + E L
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F + V D +TM V++A G G+
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALGDERLGR 316
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
MISGY + G +A+E + +E GV DE+T+ VL+A +G G I+ E
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+SY + +S Y+ I A ++ +S ++I G R EAL F
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ L + + VT+V VL+A + GAL GK + FL A+++MY +
Sbjct: 488 QM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVR 544
Score = 44.3 bits (103), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G R EAL F ++ L + + VT+V VL+A + GA KE L+
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
L + ++ Y GR+ A +D S +++GY+Q G+ A+E F K
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHK 587
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ V+ DE+T +L A S G + G
Sbjct: 588 MIESDVNPDEITFTSLLCACSRSGMVTDG 616
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD S ++ GY++AG F+EAL + ++ +G+ D T VL G L G+
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++ + A+I MY K
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVK 242
>gi|388518129|gb|AFK47126.1| unknown [Medicago truncatula]
Length = 447
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 76/181 (41%), Gaps = 34/181 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ISG SQ G +A+ F ++ G D +TMV V+ A G +L + L L
Sbjct: 169 LISGLSQGGLAMDAIVVFVDMKRHGFEPDGITMVSVMCACGSIG------DLYLALQLHK 222
Query: 61 YSLSSKTSR-------------YAHSGRIRLA---------RDPVSCKAMISGYSQAGRF 98
Y +KT+ Y GR+ LA R+ S +MI GY+ G
Sbjct: 223 YVFQAKTNEWTVILMSNSLIDMYGKCGRMDLAYEVFATMEDRNVSSWTSMIVGYAMHGHA 282
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------SNIFLTTAIIEMYAK 152
EAL F + GV + VT + VL+A G + G+ NI+ T ++ Y
Sbjct: 283 KEALGCFHCMRESGVKPNYVTFIGVLSACVHGGTVQEGRFYFDMMKNIYGITPQLQHYGC 342
Query: 153 M 153
M
Sbjct: 343 M 343
Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I Y++ AL + + GV D T+ +VL A S A L +++ I+L
Sbjct: 68 IIRSYTRLESPQNALRIYVSMLRAGVLPDRYTLPIVLKAVSQSFAIQLGQQVHSYGIKLG 127
Query: 58 LSS--YSLSSKTSRYAHSGRIRLARDPV---------SCKAMISGYSQAGRFNEALEPFG 106
L S Y S + Y +G A S A+ISG SQ G +A+ F
Sbjct: 128 LQSNEYCESGFINLYCKAGDFDSAHKVFDENHEPKLGSWNALISGLSQGGLAMDAIVVFV 187
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDF----------GKSN----IFLTTAIIEMYAK 152
++ G D +TMV V+ A G L K+N I ++ ++I+MY K
Sbjct: 188 DMKRHGFEPDGITMVSVMCACGSIGDLYLALQLHKYVFQAKTNEWTVILMSNSLIDMYGK 247
>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
Length = 917
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 16/152 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+G ++ G EA++ F +++ GV D+++ V VL A SG L + +E +S
Sbjct: 674 MIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFSGSSPSSLKQARLVEKLISD 733
Query: 61 YSLSSKT-------SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+ T S + SGR+ A RD S +++ ++Q G +AL+
Sbjct: 734 QGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASWNVIVTAHAQHGEVEQALKL 793
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ D +T+V VL+A S G ++ G
Sbjct: 794 FRRMQQESSRPDSITLVSVLSACSHGGLIEEG 825
Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL----TASSGPGAWILAKELQIELD- 57
+ Y Q ++ EAL+ F +++ G+ D+V+ V VL +AS G + E +E D
Sbjct: 578 AAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSASEGSKIHNILLETGMESDH 637
Query: 58 ------LSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
L+ Y+ S + RD VS AMI+G ++ G EA++ F +++
Sbjct: 638 IVSTALLNMYTASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLE 697
Query: 112 GVHTDEVTMVVVLAASSG 129
GV D+++ V VL A SG
Sbjct: 698 GVAPDKISFVTVLNAFSG 715
Score = 52.4 bits (124), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 30/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGP-----GAWILAKELQI 54
+++ +Q G EAL F +++ G T D+VT + +L A S P G + LQ
Sbjct: 276 IVAACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQC 335
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
D + + Y+ GRI A RD +S +ISG++QAG +EA+ F
Sbjct: 336 GYDTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLF 395
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + G+ D+ T + ++ G + K ++FL +A+I M+++
Sbjct: 396 RRMLAEGITPDKFTFISII---DGTARMQEAKILSELMVESGVELDVFLVSALINMHSR 451
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE--LDL 58
+ISG++QAG +EA+ F ++ + G+ D+ T + ++ ++ + EL +E ++L
Sbjct: 378 IISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDGTARMQEAKILSELMVESGVEL 437
Query: 59 SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+ +S+ + ++ G +R AR D V ++IS Y Q G ++AL +
Sbjct: 438 DVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMR 497
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G+ ++ T+V L A + AL GK ++ + A+I MYAK
Sbjct: 498 LEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFAASPAVGNALINMYAK 552
Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 81/172 (47%), Gaps = 22/172 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+IS Y Q G ++AL + G+ ++ T+V L A + G I + ++
Sbjct: 476 IISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERG 535
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
S ++ + YA G + + ++ VS + + Y Q ++ EAL+ F +
Sbjct: 536 FAASPAVGNALINMYAKCGCLEEADLVFHQCGKNLVSWNTIAAAYVQRDKWREALQLFQE 595
Query: 108 LESLGVHTDEVTMVVVL--AASSGPGA------LDFG-KSNIFLTTAIIEMY 150
++ G+ D+V+ V VL +S+ G+ L+ G +S+ ++TA++ MY
Sbjct: 596 MQLEGLKADKVSFVTVLNGCSSASEGSKIHNILLETGMESDHIVSTALLNMY 647
>gi|255566233|ref|XP_002524104.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
gi|223536672|gb|EEF38314.1| transferase, transferring glycosyl groups, putative [Ricinus
communis]
Length = 810
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 23/119 (19%)
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+LD+ S++ S + Y SG + AR + V+ MISGY++ FN+A+E +
Sbjct: 602 QLDVVSWT--SMIAGYNKSGDVESARKLFDKMPEKNLVTWSTMISGYAKNNCFNKAIELY 659
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
L+S GV +E MV V+++ + GAL+ G+ N+ L TA+++MYA+
Sbjct: 660 NVLQSEGVQANETVMVSVISSCAHLGALELGEKAHDYVVRNKITVNLILGTALVDMYAR 718
>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL--DL 58
M+SGY + G + + F +++ LG+ +D ++V V+++ S GA LA+ + + +L
Sbjct: 740 MVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNL 799
Query: 59 SSYSLSSKTS---RYAHSGRI--------RLARDPVSCKAMISGYSQAGRFNEALEPFGK 107
++S S Y SG + R+ RD V+ +IS Y+ G F EAL + K
Sbjct: 800 MDENVSVNNSLIDMYGKSGNLTIARRIFCRIPRDIVTWNTLISSYAHCGHFAEALSLYDK 859
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ + + T+V VL+A S +L+ G+ N+ + TA+I+MYAK
Sbjct: 860 MVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAK 916
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--L 58
+IS Y+ G F EAL + K+ + + T+V VL+A S + +++ ++
Sbjct: 840 LISSYAHCGHFAEALSLYDKMVLEDLKPNSATLVXVLSACSHLASLEEGEKVHNYINGGK 899
Query: 59 SSYSLSSKTS---RYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++LS T+ YA G++ +R D ++ MISGY G A+E F
Sbjct: 900 FEFNLSIATALIDMYAKCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQ 959
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD-----FGKSNIFLTTAIIEMYAKM 153
++E + +T + VL+A + G + FGK + ++ YA M
Sbjct: 960 QMEESSAKPNGLTFLAVLSACAHAGLVKEGKYLFGKMQDYSVAPNLKHYACM 1011
Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS YS+ G E ++ F ++ G++ D + + +L++ S AK +
Sbjct: 639 MISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFEAKAFHGLIIRRH 698
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y+L S Y G ++LA ++ + M+SGY + G + + F
Sbjct: 699 YTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFR 758
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++ LG+ +D ++V V+++ S GA +S N+ + ++I+MY K
Sbjct: 759 EMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDENVSVNNSLIDMYGK 816
>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 801
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+ + Q E L +++ G D VT+ VL+A+S G + K+ I
Sbjct: 384 MITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHG 443
Query: 58 LSSYSLSSK-TSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ L S Y+ SGRI +A RD V+ AMI+GY+Q+G+ +A+ F
Sbjct: 444 IEGEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWNAMIAGYTQSGQPEQAVLQFR 503
Query: 107 KLESLGVHTDEVTMVVVLAASSGP--GALDFGK------------SNIFLTTAIIEMYAK 152
+ GV VT+ VL A P G + GK +N+F+ TA+++MY+K
Sbjct: 504 AMIEAGVEPTSVTLASVLPACD-PVGGGVCAGKQIHSFALRHSLDTNVFVGTALVDMYSK 562
Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
MI+GY Q G+F++A++ F + L S V +D VT + +TA+S L ++L L
Sbjct: 281 MITGYVQNGQFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKG 340
Query: 60 SYSL------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
+S ++ Y+ G ++ A +D VS MI+ + Q E L
Sbjct: 341 MHSTLPVILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLL 400
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI-----------FLTTAIIEMYAK 152
+++ G D VT+ VL+A+S G L GK + L + +I+MY+K
Sbjct: 401 VYQMQKSGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIRHGIEGEGLESYLIDMYSK 459
Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 31/178 (17%)
Query: 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAW------ILAKELQIELD 57
Y + GR +EALE F ++ GV V+ V V A+ SG +W +L K +E
Sbjct: 183 YVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFPAAGSGDPSWPFLLYGLLIKH-GVEYV 241
Query: 58 LSSYSLSSKTSRYAHSGRIRLAR---DPVSCK------AMISGYSQAGRFNEALEPFGK- 107
+ +SS ++ ++ AR D K MI+GY Q G+F++A++ F +
Sbjct: 242 NDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQI 301
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMYAK 152
L S V +D VT + + A+S + G+ + L A++ MY++
Sbjct: 302 LGSKEVPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSR 359
>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
Length = 530
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY+Q G+ AL F LE+ G+ D TMV V++A S G+ W+ A + +
Sbjct: 248 MINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKK 307
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + L++ +A G I A D A+ISG + G AL F
Sbjct: 308 IERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFE 367
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+++ V D +T V VL A S G +D G
Sbjct: 368 RMQVQAVKPDPITFVGVLTACSHTGLVDKG 397
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG-- 136
+++ V+ AMI+GY+Q G+ AL F LE+ G+ D TMV V++A S G+ +
Sbjct: 239 SKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGW 298
Query: 137 ----------KSNIFLTTAIIEMYAK 152
+ N+ + TA+++M+AK
Sbjct: 299 VGAYVDRKKIERNVKVLTALVDMHAK 324
>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
mitochondrial-like [Vitis vinifera]
Length = 913
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 29/164 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGYS G F +AL ++E G+ D VT ++ SG W KE L
Sbjct: 442 LVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI---SGYAMWGCGKEALAVLH--- 495
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+ + L + VS A+ISG SQAG ++L+ F +++ GV + ++
Sbjct: 496 -----------QTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASI 544
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+L A + L GK ++F+ TA+I+MY+K
Sbjct: 545 TCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 588
Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 20/150 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISG SQAG ++L+ F +++ GV + ++ +L A + KE+
Sbjct: 512 LISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNG 571
Query: 54 -IE--------LDLSSYSLSSKTSRYAHSGRIRLARDPV-SCKAMISGYSQAGRFNEALE 103
IE +D+ S S S K AH R+ + S MI G++ G EA+
Sbjct: 572 FIEDVFVATALIDMYSKSSSLKN---AHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAIS 628
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGAL 133
F +++ +GV D +T +L+A G +
Sbjct: 629 VFNEMQKVGVGPDAITFTALLSACKNSGLI 658
Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSY 61
Q+ + + +E F K++ + + T+V VL A GA AK++ + LD
Sbjct: 211 QSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVS 270
Query: 62 SLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112
+ S Y+ +G++ LAR + S +MIS Y+ G N+A F +LES
Sbjct: 271 LCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSD 330
Query: 113 VHTDEVTMVVVLA 125
+ D VT +L+
Sbjct: 331 MKPDIVTWNCLLS 343
Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 14/133 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
++SG+ G E L +++ G + +M VL A S G + KE L+
Sbjct: 341 LLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNG 400
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
D Y +S Y + + A R+ + +++SGYS G F +AL
Sbjct: 401 FDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLN 460
Query: 107 KLESLGVHTDEVT 119
++E G+ D VT
Sbjct: 461 QMEKEGIKPDLVT 473
>gi|302793218|ref|XP_002978374.1| hypothetical protein SELMODRAFT_108854 [Selaginella moellendorffii]
gi|300153723|gb|EFJ20360.1| hypothetical protein SELMODRAFT_108854 [Selaginella moellendorffii]
Length = 589
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 35/183 (19%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA------------------SSG 42
M + Y+Q G+ E L+ F K++ GV + VT V ++ A SSG
Sbjct: 235 MAAAYAQNGQHAETLQLFRKMDVEGVKRNFVTFVTLVEACTRFLDLENGRVTHSRIKSSG 294
Query: 43 PGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEAL 102
+ ++ I + L+S + G R+ +S AM++ Y+Q G NEA+
Sbjct: 295 FCSVVIVSNSLIHMYTKCGDLASAIDVFRGMGD----RNTISWTAMVAAYTQHGHCNEAI 350
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALD-------------FGKSNIFLTTAIIEM 149
+ F ++ GV D VT+V V+ A G L + SN+ L A+I M
Sbjct: 351 KHFQFMDLEGVKPDVVTLVAVVHACGGVMVLSKAREIHARVSDSGYFNSNVPLANAVISM 410
Query: 150 YAK 152
Y +
Sbjct: 411 YGR 413
Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 15/120 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+Q G NEA++ F ++ GV D VT+V V+ A G A+E+ + S
Sbjct: 336 MVAAYTQHGHCNEAIKHFQFMDLEGVKPDVVTLVAVVHACGGVMVLSKAREIHARVSDSG 395
Query: 61 YSLSSK------TSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPF 105
Y S+ S Y G + ARD +S ++I+ Y+Q G+ EA+ F
Sbjct: 396 YFNSNVPLANAVISMYGRCGGLDDARDCFRRLRLKNTISWSSLIAIYAQDGQGEEAIRLF 455
>gi|302803540|ref|XP_002983523.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
gi|300148766|gb|EFJ15424.1| hypothetical protein SELMODRAFT_118230 [Selaginella moellendorffii]
Length = 506
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 82/180 (45%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-- 56
MI YSQ+G EA+E F + S V + +T VL A S A KE+ ++
Sbjct: 29 MIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEALEQGKEVHRQMVD 88
Query: 57 ---DLSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEP 104
+ + +S + YA G I AR+ VS +IS Y + G EAL+
Sbjct: 89 AGFQFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDL 148
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ K+ S GV + +T VL+A S GAL+ GK+ ++ + A++ +Y K
Sbjct: 149 YRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGK 208
Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 31/180 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y + G EAL+ + K+ S GV + +T VL+A S GA K + ++ +
Sbjct: 132 IISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQMKAAG 191
Query: 61 YS-----LSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ S Y G + AR + VS AMIS Y+ EA++ +
Sbjct: 192 YKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISSYAHHRHSEEAIQLY- 250
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK--------------SNIFLTTAIIEMYAK 152
+++ V + VT+ VL+A + G + G+ ++ L A++ MYAK
Sbjct: 251 --KAMDVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTTTGLATDEVLQNALLNMYAK 308
Score = 35.8 bits (81), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y+ EA++ + +++ V + VT+ VL+A + G + + +L ++
Sbjct: 233 MISSYAHHRHSEEAIQLY---KAMDVAPNAVTLASVLSACASLGNAEEGRAVHEKLASTT 289
Query: 61 YSLSSKT-------SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
L++ + YA G AR D +S +I+ Y+Q GR EA+E
Sbjct: 290 TGLATDEVLQNALLNMYAKCGDGDAARKIFDAMAVRDTMSWSTLIAAYTQHGRGGEAVEM 349
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+E GV VL A S G L+ +
Sbjct: 350 CRSMELEGVQASSFIYGTVLTACSQAGLLESAR 382
>gi|125524637|gb|EAY72751.1| hypothetical protein OsI_00617 [Oryza sativa Indica Group]
Length = 425
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 73/177 (41%), Gaps = 53/177 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---------------- 44
+ISG++++GRF + F + G T VT V VL+A G G
Sbjct: 132 LISGHNRSGRFELSCCSFVDMVRAGAMTTAVTYVSVLSAC-GKGKDLLLGMQVHKRVLES 190
Query: 45 ------------------------AWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR 80
AW+L + +Q+ S S +S S SG++ AR
Sbjct: 191 GVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMR---SMASWTSVISGLVRSGQVDRAR 247
Query: 81 D---------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128
D ++ AMI GY Q GRF +ALE F ++ V DE TMV V+ A +
Sbjct: 248 DLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACA 304
>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
Length = 906
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
MISGY + E L F + V D +TM V++A G L +E+
Sbjct: 267 MISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTG 326
Query: 53 ---QIELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
++ ++ S + S + + + +D VS AMISGY + G +A+E +
Sbjct: 327 FVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYT 386
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+E GV DE+T+ VL+A +G G LD G S + + ++I+MY+K
Sbjct: 387 IMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSK 444
Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 20/154 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKELQIELDLS 59
++ GY++AG F+EAL + ++ +G+ D T VL G P LA+ ++ L +
Sbjct: 166 LVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPD---LARGREVHLHVI 222
Query: 60 SYSLSSKT-------SRYAHSGRI---RLA------RDPVSCKAMISGYSQAGRFNEALE 103
Y S + Y G I RL RD +S AMISGY + E L
Sbjct: 223 RYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLR 282
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
F + V D +TM V++A G G+
Sbjct: 283 LFFMMREFFVDPDLMTMTSVISACEALGDERLGR 316
Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW---ILAKELQIELD 57
MISGY + G +A+E + +E GV DE+T+ VL+A +G G I+ E
Sbjct: 368 MISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTG 427
Query: 58 LSSYSL--SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+SY + +S Y+ I A ++ +S ++I G R EAL F
Sbjct: 428 LTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQ 487
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ L + + VT+V VL+A + GAL GK + FL A+++MY +
Sbjct: 488 QM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVR 544
Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I G R EAL F ++ L + + VT+V VL+A + GA KE L+
Sbjct: 469 IILGLRLNYRSFEALFFFQQM-ILSLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTG 527
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
L + ++ Y GR+ A +D S +++GY+Q G+ A+E F K
Sbjct: 528 LGFDGFLPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHK 587
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ V+ DE+T +L A S G + G
Sbjct: 588 MIESDVNPDEITFTSLLCACSRSGMVTDG 616
Score = 41.2 bits (95), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD S ++ GY++AG F+EAL + ++ +G+ D T VL G L G+
Sbjct: 158 RDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREV 217
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++ + A+I MY K
Sbjct: 218 HLHVIRYGFESDVDVVNALITMYVK 242
>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
Length = 699
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI+GY GR EAL F ++ G EVT+V LTA + GA W+ +
Sbjct: 298 MIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRG 357
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS ++ Y+ G + A R+ + + +SG + G + L F
Sbjct: 358 MRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFK 417
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ES GV + VT VVVL S G +D G++
Sbjct: 418 RMESTGVEPNGVTFVVVLRGCSMAGLVDEGRA 449
Score = 52.8 bits (125), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD V+ AMI+GY GR EAL F ++ G EVT+V L A + GAL+ GK
Sbjct: 290 RDHVAWNAMIAGYVHTGRSREALRLFDEMRHAGAAVGEVTLVSALTACAQLGALERGKWV 349
Query: 139 -----------NIFLTTAIIEMYAK 152
++ L TA+I+MY+K
Sbjct: 350 HSCAHSRGMRLSVTLGTALIDMYSK 374
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G++ GRF +LE + K+ G+ D+ L + +G K + L
Sbjct: 789 MIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCG 848
Query: 61 YSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S ++ YA G I AR D VS +MISGY+ G +E L F
Sbjct: 849 CSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFD 908
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+ S GV + V+++ VL A GAL G+ +I + TAI++MY+K
Sbjct: 909 LMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK 966
Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-------GPGAWILAKELQ 53
MI+ Y+ NEAL F ++ + VT+V L A + G +A
Sbjct: 278 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKG 337
Query: 54 IELDLSS-------YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106
ELD S Y S + +D VS A++SGY+Q G +++ F
Sbjct: 338 FELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFR 397
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ S G+ D V +V +LAASS G SN+F+ ++IE+Y+K
Sbjct: 398 NMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSK 455
Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 15/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SGY+Q G +++ F + S G+ D V +V +L ASS G + A L + S
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSG 438
Query: 61 YSLS-----SKTSRYAHSGRI---------RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
++ + S Y+ G + + RD V +MI+ Y GR EALE F
Sbjct: 439 FNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFD 498
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ ++ V + VT + +L+A S G ++ G
Sbjct: 499 QMVKNSTVRPNNVTFLSILSACSHAGLVEEG 529
Score = 44.3 bits (103), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
M++GY Q EAL F ++ + V D VT+V V++A + G+ + ++
Sbjct: 176 MVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRR 235
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
E D ++S + YA +G ++A +D +S MI+ Y+ NEAL F
Sbjct: 236 EFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLF 295
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + VT+V L A + L+ GK + ++TA+I+MY K
Sbjct: 296 HEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMK 354
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,271,933,925
Number of Sequences: 23463169
Number of extensions: 82317395
Number of successful extensions: 231018
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2854
Number of HSP's successfully gapped in prelim test: 2376
Number of HSP's that attempted gapping in prelim test: 208017
Number of HSP's gapped (non-prelim): 17473
length of query: 153
length of database: 8,064,228,071
effective HSP length: 116
effective length of query: 37
effective length of database: 9,637,467,763
effective search space: 356586307231
effective search space used: 356586307231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)