BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039275
(153 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O64705|PP184_ARATH Pentatricopeptide repeat-containing protein At2g34400
OS=Arabidopsis thaliana GN=PCMP-E23 PE=3 SV=2
Length = 621
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 92/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI---LAKELQI--E 55
MISGYS+AG +A++ F K+E G DE T+V +L A S G L +E+ I +
Sbjct: 204 MISGYSEAGYAKDAMDLFRKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKK 263
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ LS++ S S Y G + AR D V+ AMI+ YSQ G+ +EA + F
Sbjct: 264 IGLSTFLGSKLISMYGKCGDLDSARRVFNQMIKKDRVAWTAMITVYSQNGKSSEAFKLFF 323
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++E GV D T+ VL+A GAL+ GK NI++ T +++MY K
Sbjct: 324 EMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELSLQHNIYVATGLVDMYGK 381
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEA-LEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQI 54
MI G + +EA L + +++ G+ D+ T V A + G G + + ++
Sbjct: 102 MIRGLTNTWNDHEAALSLYRRMKFSGLKPDKFTYNFVFIACAKLEEIGVGRSVHSSLFKV 161
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L+ + S YA G++ AR D VS +MISGYS+AG +A++ F
Sbjct: 162 GLERDVHINHSLIMMYAKCGQVGYARKLFDEITERDTVSWNSMISGYSEAGYAKDAMDLF 221
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
K+E G DE T+V +L A S G L G+ + FL + +I MY K
Sbjct: 222 RKMEEEGFEPDERTLVSMLGACSHLGDLRTGRLLEEMAITKKIGLSTFLGSKLISMYGK 280
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
MI+ YSQ G+ +EA + F ++E GV D T+ VL+A GA L K+++ +
Sbjct: 305 MITVYSQNGKSSEAFKLFFEMEKTGVSPDAGTLSTVLSACGSVGALELGKQIETHASELS 364
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y + Y GR+ A ++ + AMI+ Y+ G EAL F
Sbjct: 365 LQHNIYVATGLVDMYGKCGRVEEALRVFEAMPVKNEATWNAMITAYAHQGHAKEALLLFD 424
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + V ++T + VL+A G + G
Sbjct: 425 R---MSVPPSDITFIGVLSACVHAGLVHQG 451
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
+ SGY+ +GR EA++ F K+ +GV D +V VL+A G WI+ ++E
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+ +S+ ++ + YA G++ AR D V+ MI GY+ E +E F
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + D+ ++V L++ + GALD G+ +N+F+ A+I+MYAK
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAK 360
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+G+ F+E L+ F + G++ T +VL A + + L +L +
Sbjct: 82 LINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCG 141
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ +++S S Y+ SGR+ A R V+ A+ SGY+ +GR EA++ F
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFK 201
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
K+ +GV D +V VL+A G LD G + N F+ T ++ +YAK
Sbjct: 202 KMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAK 259
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 62/150 (41%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI GY+ E +E F ++ + D+ ++V L++ + GA W ++ + E
Sbjct: 284 MIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G + +D V A ISG ++ G + FG
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ E LG+ D T + +L G + G
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDG 433
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 89/180 (49%), Gaps = 28/180 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G + EALE F + V DE TMV V++A + G+ L +++ + +D
Sbjct: 237 MISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHG 296
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + K Y+ G + A +D +S +I GY+ + EAL F
Sbjct: 297 FGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQ 356
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIF-------------LTTAIIEMYAK 152
++ G ++VTM+ +L A + GA+D G+ +++ L T++I+MYAK
Sbjct: 357 EMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAK 416
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 37/164 (22%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+IS Y Q GR +A + F K H D V+ ++ + G A++L E+ +
Sbjct: 175 LISMYVQNGRLEDAHKVFDK----SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPV-- 228
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+D VS AMISGY++ G + EALE F + V DE TM
Sbjct: 229 -------------------KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTM 269
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V V++A + G+++ G+ SN+ + A+I++Y+K
Sbjct: 270 VTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSK 313
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 17/159 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I GY+ + EAL F ++ G ++VTM+ +L A + GA + + + + +D
Sbjct: 338 LIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRL 397
Query: 61 YSLSSKTS-------RYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEP 104
+++ +S YA G I L + S AMI G++ GR + + +
Sbjct: 398 KGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDL 457
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLT 143
F ++ +G+ D++T V +L+A S G LD G+ +IF T
Sbjct: 458 FSRMRKIGIQPDDITFVGLLSACSHSGMLDLGR-HIFRT 495
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MIS YSQ G +EAL F ++ +E T VLT+ L K++ ++ +
Sbjct: 124 MISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWN 183
Query: 58 LSSYSL--SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
S+ SS YA +G+I+ AR D VSC A+I+GY+Q G EALE F
Sbjct: 184 YDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFH 243
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSN------------IFLTTAIIEMYAK 152
+L S G+ + VT +L A SG LD GK L ++I+MY+K
Sbjct: 244 RLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSK 301
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
+I+GY+Q G EALE F +L S G+ + VT +LTA SG K+ L+ E
Sbjct: 225 IIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRE 284
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD---------PVSCKAMISGYSQAGRFNEALEPFG 106
L + +S Y+ G + AR +S AM+ GYS+ G E LE F
Sbjct: 285 LPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFR 344
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
+ + V D VT++ VL+ S D G NIF
Sbjct: 345 LMRDEKRVKPDAVTLLAVLSGCSHGRMEDTG-LNIF 379
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
++ VS AMIS YSQ G +EAL F ++ +E T VL + L GK
Sbjct: 116 KNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI 175
Query: 138 ----------SNIFLTTAIIEMYAK 152
S+IF+ +++++MYAK
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAK 200
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 93/209 (44%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI------ 54
MISGY++ + E++E ++E V VT+++VL+A S L K +
Sbjct: 207 MISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECK 266
Query: 55 -------------------ELDLSSYSLSSKTSR-----------YAHSGRIRLAR---- 80
E+D++ S +R Y G ++LAR
Sbjct: 267 TEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFD 326
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D +S MI GY +AG FNE+LE F +++S G+ DE TMV VL A + G+L+
Sbjct: 327 QMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEI 386
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G K+++ + A+I+MY K
Sbjct: 387 GEWIKTYIDKNKIKNDVVVGNALIDMYFK 415
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 20/151 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI GY +AG FNE+LE F +++S G+ DE TMV VLTA + G+ + + ++ +D +
Sbjct: 339 MIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNK 398
Query: 61 YS-----------------LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103
S K + H RD + AM+ G + G+ EA++
Sbjct: 399 IKNDVVVGNALIDMYFKCGCSEKAQKVFHDMD---QRDKFTWTAMVVGLANNGQGQEAIK 455
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
F +++ + + D++T + VL+A + G +D
Sbjct: 456 VFFQMQDMSIQPDDITYLGVLSACNHSGMVD 486
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-SSGPGAWILAKELQ---IEL 56
MI G+S+ E + + + GV D T +L GA K+L ++
Sbjct: 105 MIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKF 164
Query: 57 DLSS--YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
L S Y ++ Y+ G + +AR D S MISGY++ + E++E
Sbjct: 165 GLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELL 224
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E V VT+++VL+A S D K
Sbjct: 225 VEMERNLVSPTSVTLLLVLSACSKVKDKDLCK 256
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 80/165 (48%), Gaps = 16/165 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------Q 53
+I G + AGR NEA+E F ++ G+ D+ TMV V + G G LA +L +
Sbjct: 189 IIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAK 248
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
E L+S Y GR+ LA R+ VS +MI GY+ G EALE
Sbjct: 249 TEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALEC 308
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEM 149
F ++ GV +++T V VL+A G ++ GK+ + + E+
Sbjct: 309 FRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFEL 353
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 29 DEVTMVVVLTASSGPGAWILAKELQ---IELDL--SSYSLSSKTSRYAHSGRIRLARDPV 83
D ++ +V+ A+ + L KEL + L + S + Y +G AR
Sbjct: 116 DRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVF 175
Query: 84 ---------SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
S A+I G + AGR NEA+E F ++ G+ D+ TMV V A+ G G L
Sbjct: 176 DENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLS 235
Query: 135 FG--------------KSNIFLTTAIIEMYAK 152
KS+I + ++I+MY K
Sbjct: 236 LAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGK 267
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
+ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+ L + + +D
Sbjct: 221 VISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRG 280
Query: 59 --SSYSLSSKT-SRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ SL++ YA SG I A D C +I+G + G EAL F
Sbjct: 281 MNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFN 340
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ GV ++VT + +L+A S G +D GK
Sbjct: 341 RMVKAGVRPNDVTFIAILSACSHVGWVDLGK 371
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ VS +ISGY+++GR +EA+E F ++ V DEVT++ VL+A + G+L+ G+
Sbjct: 213 RNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGSLELGERI 272
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ L A+I+MYAK
Sbjct: 273 CSYVDHRGMNRAVSLNNAVIDMYAK 297
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+G + G EAL F ++ GV ++VT + +L+A S G W+ DL
Sbjct: 322 IIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVG-WV---------DLGK 371
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S S+Y I + C MI +AG+ EA E ++S+ +
Sbjct: 372 RLFNSMRSKYGIHPNI----EHYGC--MIDLLGRAGKLREADEV---IKSMPFKANAAIW 422
Query: 121 VVVLAASSGPGALDFGK 137
+LAAS+ L+ G+
Sbjct: 423 GSLLAASNVHHDLELGE 439
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+I+GY+Q+G + +AL ++ + + D T+ VL S I KE+ +
Sbjct: 213 IIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKG 272
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RL-ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+D Y SS YA S RI RL RD +S ++++GY Q GR+NEAL F
Sbjct: 273 IDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFR 332
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ + V V V+ A + L GK SNIF+ +A+++MY+K
Sbjct: 333 QMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSK 390
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D VS +I+GY+Q+G + +AL ++ + + D T+ VL S + GK
Sbjct: 205 KDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEI 264
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++++ +++++MYAK
Sbjct: 265 HGYVIRKGIDSDVYIGSSLVDMYAK 289
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 34/186 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWI-------- 47
+ISG+ RF++A+E F +++S GV +E MV +L A G W
Sbjct: 179 LISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLG 238
Query: 48 LAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRF 98
Q ++ + +S YA G +R AR VS ++I+GYSQ G
Sbjct: 239 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 298
Query: 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAI 146
EAL F + LG+ D+VT + V+ AS G G+S + + A+
Sbjct: 299 EEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCAL 358
Query: 147 IEMYAK 152
+ MYAK
Sbjct: 359 VNMYAK 364
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 34/186 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GYS + ++AL + ++ G D T VL A SG G+ + ++
Sbjct: 78 MIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCVHGFVVKTG 137
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RLARD-----PVSCKAMISGYSQAGRFNEALEPFG 106
+++ Y + Y G + R+ D V+ ++ISG+ RF++A+E F
Sbjct: 138 FEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFR 197
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------------------NIFLTTAI 146
+++S GV +E MV +L A + GK N+ L T++
Sbjct: 198 EMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSL 257
Query: 147 IEMYAK 152
I+MYAK
Sbjct: 258 IDMYAK 263
>sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3
SV=1
Length = 544
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MI G + N+ALE F +++ V +E T V VL+A S GA W+ +
Sbjct: 226 MIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWVHSFVENQR 285
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
++LS++ ++ + Y+ G I AR D +S MISG + G EA+ F
Sbjct: 286 MELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFR 345
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ + G ++VT+V +L A S G LD G
Sbjct: 346 DMVNRGFRPNQVTLVALLNACSHGGLLDIG 375
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
+D V AMI G + N+ALE F +++ V +E T V VL+A S GAL+ G+
Sbjct: 218 KDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWV 277
Query: 138 -----------SNIFLTTAIIEMYAK 152
SN F+ A+I MY++
Sbjct: 278 HSFVENQRMELSN-FVGNALINMYSR 302
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 37/184 (20%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MIS + Q G +E L +++ G D +T+ +L+A+S A+++ +
Sbjct: 390 MISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQG 449
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNE 100
+Q E ++SY + Y+ SG IR++ RD + +MISGY+Q G +
Sbjct: 450 IQFE-GMNSYLID----MYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEK 504
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIE 148
F K+ + + VT+ +L A S G++D GK N+F+ +A+++
Sbjct: 505 TFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVD 564
Query: 149 MYAK 152
MY+K
Sbjct: 565 MYSK 568
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 21/156 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-------WILAKELQ 53
+IS Y + GR EA FG + + V V+ V V A S + + L +L
Sbjct: 185 LISWYVKTGRNAEACRQFGIMMRMEVKPSPVSFVNVFPAVSISRSIKKANVFYGLMLKLG 244
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLARDPV-SC--------KAMISGYSQAGRFNEALEP 104
E + +SS S YA G I +R SC MI Y Q E++E
Sbjct: 245 DEYVKDLFVVSSAISMYAELGDIESSRRVFDSCVERNIEVWNTMIGVYVQNDCLVESIEL 304
Query: 105 FGKLESLG---VHTDEVTMVVVLAASSGPGALDFGK 137
F LE++G + +DEVT ++ +A S ++ G+
Sbjct: 305 F--LEAIGSKEIVSDEVTYLLAASAVSALQQVELGR 338
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 91/178 (51%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
++S Y+Q G EALE F ++ + V D V +V VL A + G I A +++
Sbjct: 193 IVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMG 252
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L++ L S + YA G++ A+ + + AMISGY++ G EA++ F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++ + V D +++ ++A + G+L+ +S ++F+++A+I+M+AK
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAK 370
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY++ G EA++ F ++ + V D +++ ++A + G+ A+ + + S
Sbjct: 294 MISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSD 353
Query: 61 YS-----LSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ +A G + L RD V AMI GY GR EA+ +
Sbjct: 354 YRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYR 413
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+E GVH ++VT + +L A + G + G
Sbjct: 414 AMERGGVHPNDVTFLGLLMACNHSGMVREG 443
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
+I GYS+ F +AL + ++ V D T +L A SG G ++ A+ ++
Sbjct: 90 IIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLG 149
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDP-----------VSCKAMISGYSQAGRFNEALEP 104
D + + + YA R+ AR VS A++S Y+Q G EALE
Sbjct: 150 FDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEI 209
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ + V D V +V VL A + L G+S
Sbjct: 210 FSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRS 243
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT------ASSGPGAWILAKELQI 54
M++GY+Q G A++ FG+L G+ +E T +L AS G G ++
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKS 524
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
LD S S+ + YA G I A +D VS +MISGY+Q G+ +AL+ F
Sbjct: 525 RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVF 584
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ V D VT + V AA + G ++ G+
Sbjct: 585 KEMKKRKVKMDGVTFIGVFAACTHAGLVEEGE 616
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS--GPGAWILAKELQIELDL 58
MISG+ Q EA++ F +++ GV +E T V+LTA P + A+ ++ +
Sbjct: 368 MISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE-VHAQVVKTNYER 426
Query: 59 SSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
SS ++ Y G++ A +D V+ AM++GY+Q G A++ FG+L
Sbjct: 427 SSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELT 486
Query: 110 SLGVHTDEVTMVVVL------AASSGPGALDFG-------KSNIFLTTAIIEMYAK 152
G+ +E T +L AS G G G S++ +++A++ MYAK
Sbjct: 487 KGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAK 542
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAA 126
VS AMISG+ Q EA++ F +++ GV +E T V+L A
Sbjct: 363 VSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA 406
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
++ G+S+ GR EA F + LG+ D VL S+ + ++L +
Sbjct: 64 LLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFG 123
Query: 56 -LDLSSYSLS-----SKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
LD S S K S + ++ R+ V+ +ISGY++ +E L F
Sbjct: 124 FLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFM 183
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
++++ G + T L + G
Sbjct: 184 RMQNEGTQPNSFTFAAALGVLAEEG 208
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGY++ +E L F ++++ G + T L + G + + LQ+
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEG--VGGRGLQVHTVVVK 222
Query: 56 --LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
LD + +S + Y G +R AR V+ +MISGY+ G EAL
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
F + V E + V+ + L F
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCANLKELRF 313
>sp|Q56X05|PPR15_ARATH Pentatricopeptide repeat-containing protein At1g06145
OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2
Length = 577
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE-----LQIE 55
MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G + KE LQ
Sbjct: 258 MIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNG 317
Query: 56 LDLSSYSLSSKTSRYAHSGRI--------RLARDPVSC-KAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L + + C ++I G + G EAL+ F
Sbjct: 318 FVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFA 377
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+E V + VT V V A + G +D G+
Sbjct: 378 KMEMESVKPNAVTFVSVFTACTHAGLVDEGR 408
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D +S MI GYSQ R+ EA+ F K+ G+ DEVTM V++A + G L+ GK
Sbjct: 250 KDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEV 309
Query: 139 -----------NIFLTTAIIEMYAK 152
++++ +A+++MY+K
Sbjct: 310 HMYTLQNGFVLDVYIGSALVDMYSK 334
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I G + G EAL+ F K+E V + VT V V TA + G + + + +
Sbjct: 359 IIEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSM-IDD 417
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
YS+ S Y M+ +S+AG EALE G +E
Sbjct: 418 YSIVSNVEHYG---------------GMVHLFSKAGLIYEALELIGNME 451
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 91/177 (51%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
M++G++QAG+ +A+E + ++++ G D V M+ +L AS G + + + +
Sbjct: 188 MVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQASGDLGDTKMGRSVHGYLYRTG 247
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L ++ +S YA G I +A + VS ++ISG++Q G N+A E
Sbjct: 248 LPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVV 307
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNIF---LTTAIIEMYAK 152
+++SLG D VT+V VL A S G+L G K ++ TA+++MY+K
Sbjct: 308 EMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVLDRVTATALMDMYSK 364
>sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430
OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1
Length = 570
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
M++GY Q RF+EALE F +++ G+ D +V +LT + GA WI +
Sbjct: 250 MMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYINENR 309
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + ++ YA G I A RD S ++I G + G AL+ +
Sbjct: 310 VTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRALDLYY 369
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++E++GV D +T V VL A + G + G+
Sbjct: 370 EMENVGVRLDAITFVAVLTACNHGGFVAEGR 400
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 21/104 (20%)
Query: 70 YAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
Y +GRI AR D V AM++GY Q RF+EALE F +++ G+ D +
Sbjct: 223 YVSTGRIDEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVL 282
Query: 121 VVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V +L + GAL+ GK + + TA+++MYAK
Sbjct: 283 VSLLTGCAQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAK 326
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ + F + L FG+L G++ D T+ VVL + G + ++
Sbjct: 17 MLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEGEKVHGYAVKAG 76
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ SY +S YA G+I + RD VS +IS Y GRF +A+ F
Sbjct: 77 LEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGNGRFEDAIGVFK 136
Query: 107 KL-ESLGVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYAK 152
++ + + DE T+V L+A S L+ G+ ++ + A+++M+ K
Sbjct: 137 RMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIGNALVDMFCK 194
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 72/152 (47%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MIS Y G + +A+E + ++ S+GV D VT VL A S A L K QI L +S
Sbjct: 381 MISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAA--LEKGKQIHLSISE 438
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S+ Y+ G + A +D VS MIS Y G+ EAL
Sbjct: 439 SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQ 498
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
F +++ G+ D VT++ VL+A G +D G
Sbjct: 499 FDEMQKFGLKPDGVTLLAVLSACGHAGLIDEG 530
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++SGYS+ F++ LE F +L + + D T V+ A G L + + + S
Sbjct: 77 LMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFLGRMIHTLVVKS 136
Query: 60 SYSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
Y SS YA + RD S +IS + Q+G +ALE F
Sbjct: 137 GYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELF 196
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G++ES G + V++ V ++A S L+ GK + ++ +A+++MY K
Sbjct: 197 GRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGK 255
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
MI GY G +E ++ G + T+ +L A S G +I ++
Sbjct: 280 MIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSV 339
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVS---------CKAMISGYSQAGRFNEALEPFG 106
++ Y S Y G LA S MIS Y G + +A+E +
Sbjct: 340 VNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYD 399
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S+GV D VT VL A S AL+ GK ++ L +A+++MY+K
Sbjct: 400 QMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 457
>sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E5 PE=3
SV=1
Length = 695
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M +G+SQ G E LE F ++ L + TDEV++ V++A + G + A+ +
Sbjct: 421 MTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASISSLELGEQVFARATIVG 480
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD SS Y G + R D V +MISGY+ G+ EA++ F
Sbjct: 481 LDSDQVVSSSLIDLYCKCGFVEHGRRVFDTMVKSDEVPWNSMISGYATNGQGFEAIDLFK 540
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ G+ ++T +VVL A + G ++ G+
Sbjct: 541 KMSVAGIRPTQITFMVVLTACNYCGLVEEGR 571
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 59/208 (28%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++ GY G EAL F + L D +T+ VL A + A K++ ++ +
Sbjct: 161 LLHGYILNGYAEEALRLF---KELNFSADAITLTTVLKACAELEALKCGKQIHAQILIGG 217
Query: 61 YSLSSKTSR-----YAHSGRIRLA-------RDPV--SCKAMISGYSQAGRFNEALEPFG 106
SK + YA G +R+A R+P S A+ISGY+ GR NE+ F
Sbjct: 218 VECDSKMNSSLVNVYAKCGDLRMASYMLEQIREPDDHSLSALISGYANCGRVNESRGLFD 277
Query: 107 ----------------------KLESLGVHT--------DEVTMVVVLAASSGPGALDFG 136
K+E+L + D T+ V+ A G G L+ G
Sbjct: 278 RKSNRCVILWNSMISGYIANNMKMEALVLFNEMRNETREDSRTLAAVINACIGLGFLETG 337
Query: 137 K------------SNIFLTTAIIEMYAK 152
K +I + + +++MY+K
Sbjct: 338 KQMHCHACKFGLIDDIVVASTLLDMYSK 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 73/153 (47%), Gaps = 26/153 (16%)
Query: 24 LGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYS---LSSKTSRYAHSGRIRLAR 80
G+ D V +L S G+ + A +L E++ SY L+S Y GRI A+
Sbjct: 347 FGLIDDIVVASTLLDMYSKCGSPMEACKLFSEVE--SYDTILLNSMIKVYFSCGRIDDAK 404
Query: 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+S +M +G+SQ G E LE F ++ L + TDEV++ V++A +
Sbjct: 405 RVFERIENKSLISWNSMTNGFSQNGCTVETLEYFHQMHKLDLPTDEVSLSSVISACASIS 464
Query: 132 ALDFGK------------SNIFLTTAIIEMYAK 152
+L+ G+ S+ +++++I++Y K
Sbjct: 465 SLELGEQVFARATIVGLDSDQVVSSSLIDLYCK 497
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
YS + S +A +G + +AR D V+ +++ GY G EAL F + L
Sbjct: 125 YSWNVVVSGFAKAGELSVARRLFNAMPEKDVVTLNSLLHGYILNGYAEEALRLF---KEL 181
Query: 112 GVHTDEVTMVVVLAASSGPGALDFGK 137
D +T+ VL A + AL GK
Sbjct: 182 NFSADAITLTTVLKACAELEALKCGK 207
>sp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460
OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1
Length = 623
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+ISGY+ + +A F +++ GV D VTM+ ++ + P L + L +
Sbjct: 127 LISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGG 186
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARD-----PV----SCKAMISGYSQAGRFNEALEPFG 106
LD L+S + Y G + R PV + A+ISGYSQ G + LE +
Sbjct: 187 LDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYE 246
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
+++S GV D T+V VL++ + GA G N+F++ A I MYA+
Sbjct: 247 QMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYAR 304
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 61 YSLSSKTSRYAHSGRIRLAR-----DP------VSCKAMISGYSQAGRFNEALEPFGKLE 109
+ L++ S Y G + AR +P V A+ISGY+ + +A F +++
Sbjct: 89 FVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMK 148
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS 138
GV D VTM+ ++ + P L G+S
Sbjct: 149 ETGVSVDSVTMLGLVPLCTVPEYLWLGRS 177
>sp|Q9LVF9|PP245_ARATH Pentatricopeptide repeat-containing protein At3g21470
OS=Arabidopsis thaliana GN=PCMP-E29 PE=2 SV=1
Length = 523
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 14/147 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IE 55
+I+GY+Q G ++A++ F ++ G D VT+ +L+A + G + +E+
Sbjct: 245 LIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRG 304
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
++L+ + ++ YA G + A R C +MIS + G+ EALE F
Sbjct: 305 IELNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFS 364
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGAL 133
+ESL + DE+T + VL A G L
Sbjct: 365 TMESLDLKPDEITFIAVLTACVHGGFL 391
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ARD V +I+GY+Q G ++A++ F ++ G D VT+ +L+A + G LD G+
Sbjct: 235 FARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGR 294
Query: 138 S------------NIFLTTAIIEMYAK 152
N F++ A+I+MYAK
Sbjct: 295 EVHSLINHRGIELNQFVSNALIDMYAK 321
>sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2
SV=1
Length = 681
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 90/209 (43%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------- 52
+I+GY + G +A+ + +ES GV D+VTM+ ++++ S G KE
Sbjct: 228 LINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENG 287
Query: 53 -------------------------QIELDLSSYSLSSKT---SRYAHSGRIRLAR---- 80
+I +L ++ S T S YA G + ++R
Sbjct: 288 LRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFD 347
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
D V AMI G QA R +AL F ++++ DE+TM+ L+A S GALD
Sbjct: 348 DMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDV 407
Query: 136 G------------KSNIFLTTAIIEMYAK 152
G N+ L T++++MYAK
Sbjct: 408 GIWIHRYIEKYSLSLNVALGTSLVDMYAK 436
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 18/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G QA R +AL F ++++ DE+TM+ L+A S GA L + I +
Sbjct: 360 MIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGA--LDVGIWIHRYIEK 417
Query: 61 YSLS-------SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
YSLS S YA G I A R+ ++ A+I G + G + A+
Sbjct: 418 YSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISY 477
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ G+ DE+T + +L+A G + G+
Sbjct: 478 FNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRD 511
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 41 SGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISG 91
S G IL L++ L+L S+ ++ +A G + AR D VS +I+G
Sbjct: 172 SSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLING 231
Query: 92 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------N 139
Y + G +A+ + +ES GV D+VTM+ ++++ S G L+ GK
Sbjct: 232 YKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMT 291
Query: 140 IFLTTAIIEMYAK 152
I L A+++M++K
Sbjct: 292 IPLVNALMDMFSK 304
>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330
OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2
Length = 903
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-----ASSGPGAWILAKELQIE 55
+ISGY + +A F ++ +G+ D+ T VL AS+G G I A+ ++ E
Sbjct: 574 IISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKE 633
Query: 56 LDLSSYSLSSKTSRYAHSGRIR---------LARDPVSCKAMISGYSQAGRFNEALEPFG 106
L Y S+ Y+ G + L RD V+ AMI GY+ G+ EA++ F
Sbjct: 634 LQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFE 693
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + + VT + +L A + G +D G
Sbjct: 694 RMILENIKPNHVTFISILRACAHMGLIDKG 723
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-------SSGPGAWILAKELQ 53
MI+GYSQ +AL F +L S G+ DE+++ V A S G + LA +
Sbjct: 353 MITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSS 412
Query: 54 IELDL----SSYSLSSKTSRYAHSGRI---RLARDPVSCKAMISGYSQAGRFNEALEPFG 106
+ LD+ ++ + K A + R+ RD VS A+I+ + Q G+ E L F
Sbjct: 413 LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFV 472
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + DE T +L A +G G+L +G SN + ++I+MY+K
Sbjct: 473 SMLRSRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSK 529
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 77 RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
RL VS ++ISGY + +A F ++ +G+ D+ T VL + + G
Sbjct: 563 RLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG 622
Query: 137 K------------SNIFLTTAIIEMYAK 152
K S++++ + +++MY+K
Sbjct: 623 KQIHAQVIKKELQSDVYICSTLVDMYSK 650
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RD VS +M+SGY Q G +++E F + G+ D T ++L S G
Sbjct: 143 RDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQI 202
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+++ +A+++MYAK
Sbjct: 203 HGIVVRVGCDTDVVAASALLDMYAK 227
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 74/178 (41%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M+SGY Q G +++E F + G+ D T ++L S G I +++
Sbjct: 151 MLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVG 210
Query: 56 LDLSSYSLSSKTSRYAHSGR----IRL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
D + S+ YA R +R+ ++ VS A+I+G Q + AL+ F
Sbjct: 211 CDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFK 270
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG--------KSNI----FLTTAIIEMYAK 152
+++ + + VL + + L G KS+ + TA ++MYAK
Sbjct: 271 EMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAK 328
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------- 136
S AMI+GYSQ +AL F +L S G+ DE+++ V A + L G
Sbjct: 349 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 408
Query: 137 -KS----NIFLTTAIIEMYAK 152
KS ++ + A I+MY K
Sbjct: 409 IKSSLSLDVCVANAAIDMYGK 429
>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2
SV=1
Length = 559
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MISG+ + GRF +AL+ F +++ V D TMV +L A +S G WI ++
Sbjct: 229 MISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEYIVRNR 288
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+L+S +++ Y G I + C +MI G + G A++ F
Sbjct: 289 FELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERAMDLFS 348
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG 131
+LE G+ D V+ + VL A + G
Sbjct: 349 ELERSGLEPDSVSFIGVLTACAHSG 373
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
R+ VS +MISG+ + GRF +AL+ F +++ V D TMV +L A + GA + G+
Sbjct: 221 RNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWI 280
Query: 139 -----------NIFLTTAIIEMYAK 152
N + TA+I+MY K
Sbjct: 281 HEYIVRNRFELNSIVVTALIDMYCK 305
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 58/210 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG---------PGAWILAKE 51
MI+G+ Q G ++ALE F K+ES V VTMV VL+A + ++I
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENR 262
Query: 52 LQIELDLSSYSLSSKTSR---------------------------YAHSGRIRLAR---- 80
+ + L L++ L T YA S AR
Sbjct: 263 VNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLN 322
Query: 81 -----DPVSCKAMISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLAASSGPGALD 134
D V+ A+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GAL+
Sbjct: 323 SMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALE 382
Query: 135 FG------------KSNIFLTTAIIEMYAK 152
G + N +T+A+I MY+K
Sbjct: 383 LGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
+D VS +MI+G+ Q G ++ALE F K+ES V VTMV VL+A + L+FG+
Sbjct: 195 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQV 254
Query: 139 -----------NIFLTTAIIEMYAK 152
N+ L A+++MY K
Sbjct: 255 CSYIEENRVNVNLTLANAMLDMYTK 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLE-SLGVHTDEVTMVVVLTASSGPGA-----WILAKELQI 54
+IS Y Q G+ NEAL F +L+ + +++T+V L+A + GA WI + +
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
+ ++ + S+ Y+ G + +R D AMI G + G NEA++ F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K++ V + VT V A S G +D +S
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAES 487
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 82/189 (43%), Gaps = 38/189 (20%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----EL 56
ISGY+Q G EAL ++ S G+ +EVT++ VL+ + GA + KE+ +
Sbjct: 337 ISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPI 396
Query: 57 DL-------SSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRF 98
DL + ++ YA ++ A RD V+ MI GYSQ G
Sbjct: 397 DLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDA 456
Query: 99 NEALEPFGKL--ESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLT 143
N+ALE ++ E + T+ L A + AL GK +F++
Sbjct: 457 NKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVS 516
Query: 144 TAIIEMYAK 152
+I+MYAK
Sbjct: 517 NCLIDMYAK 525
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 17/163 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPGAWILAKELQI----- 54
+I Y++ G+ ALE F ++ + G D +T+V VL + G L K+L
Sbjct: 199 IIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTS 258
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
E+ + + + YA G + A +D VS AM++GYSQ GRF +A+ F
Sbjct: 259 EMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLF 318
Query: 106 GKLESLGVHTDEVTMVVVLA--ASSGPGALDFGKSNIFLTTAI 146
K++ + D VT ++ A G G G L++ I
Sbjct: 319 EKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGI 361
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKL--ESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL 58
MI GYSQ G N+ALE ++ E + T+ L A + A + K++
Sbjct: 446 MIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIH----- 500
Query: 59 SSYSLSSKTS------------RYAHSGRIR---------LARDPVSCKAMISGYSQAGR 97
+Y+L ++ + YA G I +A++ V+ ++++GY G
Sbjct: 501 -AYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGY 559
Query: 98 FNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
EAL F ++ +G D VT++VVL A S G +D G
Sbjct: 560 GEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQG 598
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 52/137 (37%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++GYSQ GRF +A+ F K++ E +I++D+ +
Sbjct: 301 MVAGYSQIGRFEDAVRLFEKMQ----------------------------EEKIKMDVVT 332
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
+S A ISGY+Q G EAL ++ S G+ +EVT+
Sbjct: 333 WS------------------------AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368
Query: 121 VVVLAASSGPGALDFGK 137
+ VL+ + GAL GK
Sbjct: 369 ISVLSGCASVGALMHGK 385
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------- 138
++I Y G N+ L FG + SL D T V A ++ G+S
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 139 -----NIFLTTAIIEMYAK 152
N+F+ A++ MY++
Sbjct: 156 TGFISNVFVGNALVAMYSR 174
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 17/148 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKE-----LQI 54
MI GY + G +N+ALE F ++ +G +EVTMV V+ A + GA K L +
Sbjct: 211 MIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRYILDV 270
Query: 55 ELDLSSYSLSSKTSRYAHSGRIRLA-----------RDPVSCKAMISGYSQAGRFNEALE 103
L L+ +S YA G I A D + A+I G + G E+L+
Sbjct: 271 HLPLTVILQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQ 330
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPG 131
F K+ + DE+T + +LAA S G
Sbjct: 331 LFHKMRESKIDPDEITFLCLLAACSHGG 358
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 13/86 (15%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFGKS 138
RD V+ +MI GY + G +N+ALE F ++ +G +EVTMV V+ A + GAL+ GK+
Sbjct: 203 RDVVTWSSMIDGYVKRGEYNKALEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKT 262
Query: 139 ------------NIFLTTAIIEMYAK 152
+ L T++I+MYAK
Sbjct: 263 VHRYILDVHLPLTVILQTSLIDMYAK 288
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 83/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGY + G +E LE F + L V D +T+ V++A G L +++ + +
Sbjct: 268 MISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTG 327
Query: 61 YSL-----SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ +S T Y ++G R A +D VS MISGY ++A++ +
Sbjct: 328 FAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYR 387
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ V DE+T+ VL+A + G LD G S + + +I MY+K
Sbjct: 388 MMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSK 445
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKELQIELDLS 59
++ GY++ G F+EA+ + ++ +G V D T VL G KE+ + +
Sbjct: 166 LVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRY 225
Query: 60 SYSL-----SSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPF 105
Y L ++ + Y G ++ AR D +S AMISGY + G +E LE F
Sbjct: 226 GYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELF 285
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
+ L V D +T+ V++A G G+
Sbjct: 286 FAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQA 95
G I A L+ + L + ++ Y GR+ A +D S +++GYS+
Sbjct: 517 GKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQKKDVTSWNILLTGYSER 576
Query: 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG-----PGALDFGKSNIFLTTAIIEMY 150
G+ + +E F ++ V DE+T + +L S G + F K + T ++ Y
Sbjct: 577 GQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVTPNLKHY 636
Query: 151 A 151
A
Sbjct: 637 A 637
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 39/184 (21%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY 61
+ G G+ EA++ ++ L V DE V ++ W A+E ++ S
Sbjct: 66 LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCE----WKRAQEEGSKV--YSI 119
Query: 62 SLSSKTSRYAHSGRIRLA--------------------RDPVSCKAMISGYSQAGRFNEA 101
+LSS +S G LA R+ S ++ GY++ G F+EA
Sbjct: 120 ALSSMSSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEA 179
Query: 102 LEPFGKLESL-GVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
+ + ++ + GV D T VL G L GK +I + A+I
Sbjct: 180 MCLYHRMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALIT 239
Query: 149 MYAK 152
MY K
Sbjct: 240 MYVK 243
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M++GYSQ G EA++ F ++ S G+ E T+V VL A S G + + L++
Sbjct: 293 MVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLG 352
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC---------KAMISGYSQAGRFNEALEPFG 106
+ ++ ++ YA +G + AR C ++ISGY Q EAL +
Sbjct: 353 FERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYR 412
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++++ G+ ++ TM VL A S L+ GK
Sbjct: 413 RMKTAGIIPNDPTMASVLKACSSLATLELGK 443
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 78/151 (51%), Gaps = 16/151 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+ISGY Q EAL + ++++ G+ ++ TM VL A S L K++
Sbjct: 394 LISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHG 453
Query: 54 --IELDLSSYSLSSKTSRYA--HSGRIRLARDP----VSCKAMISGYSQAGRFNEALEPF 105
+E+ + S +LS+ S+ G + R P VS AMISG S G+ +EALE F
Sbjct: 454 FGLEVPIGS-ALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELF 512
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ + G+ D+VT V +++A S G ++ G
Sbjct: 513 EEMLAEGMEPDDVTFVNIISACSHKGFVERG 543
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 36/184 (19%)
Query: 1 MISGYSQAGRFNEALEPFG---KLESLGVHTDEVTMVVV-----------------LTAS 40
M+SGY+ GR EA++ F + + G +D V V+ +T
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIK 249
Query: 41 SGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNE 100
+G ++ + + SL+ + SG R+ ++ AM++GYSQ G E
Sbjct: 250 NGLLGFVALSNALVTMYSKCESLNEACKMFDSSGD----RNSITWSAMVTGYSQNGESLE 305
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIE 148
A++ F ++ S G+ E T+V VL A S L+ GK ++F TTA+++
Sbjct: 306 AVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVD 365
Query: 149 MYAK 152
MYAK
Sbjct: 366 MYAK 369
>sp|Q3E9N1|PP359_ARATH Pentatricopeptide repeat-containing protein At4g39952,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2
SV=2
Length = 775
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 25/177 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI-----E 55
M+ GY + + +E F K+++LG+ D + V+++ S GA +L K L
Sbjct: 404 MLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSLHCYVVKTS 463
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA--------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LDL+ ++S Y G + +A + ++ AMI+ Y + +A+ F +
Sbjct: 464 LDLTISVVNSLIDLYGKMGDLTVAWRMFCEADTNVITWNAMIASYVHCEQSEKAIALFDR 523
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ S +T+V +L A G+L+ G+ N+ L+ A+I+MYAK
Sbjct: 524 MVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAK 580
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 23/160 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MI+ Y + +A+ F ++ S +T+V +L A G+ +I E
Sbjct: 504 MIASYVHCEQSEKAIALFDRMVSENFKPSSITLVTLLMACVNTGSLERGQMIHRYITETE 563
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEAL 102
++ L LS+ + YA G + +R D V MISGY G A+
Sbjct: 564 HEMNLSLSA----ALIDMYAKCGHLEKSRELFDAGNQKDAVCWNVMISGYGMHGDVESAI 619
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
F ++E V T + +L+A + G ++ GK +FL
Sbjct: 620 ALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGK-KLFL 658
>sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750
OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1
Length = 781
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 14/158 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GYSQ+G EAL F ++E G + + L+ + A L K+L L
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGG 439
Query: 61 YSLSSKTSR-----YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y Y G I A +D VS MI+GYS+ G AL F
Sbjct: 440 YETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFE 499
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTT 144
++ G+ D+ TMV VL+A S G +D G+ + T
Sbjct: 500 SMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMT 537
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 26/174 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY Q EA E F K+ +EV+ +L +AKEL + +
Sbjct: 287 MVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN 342
Query: 61 YS-LSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S ++ + YA G+I A RDPVS AMI+GYSQ+G EAL F ++E
Sbjct: 343 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G + + L+ + AL+ GK + F+ A++ MY K
Sbjct: 403 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCK 456
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---DL 58
IS Y + GR NEAL F ++ V+ +++ G + LA++L E+ DL
Sbjct: 71 ISSYMRTGRCNEALRVFKRMPRWS----SVSYNGMISGYLRNGEFELARKLFDEMPERDL 126
Query: 59 SSYSLSSK-TSRYAHSGRIRL------ARDPVSCKAMISGYSQAGRFNEALEPFGKL 108
S+++ K R + G+ R RD S M+SGY+Q G ++A F ++
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRM 183
>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840
OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1
Length = 706
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
+I GY QAG E + F + G + + +L+ S G + A L
Sbjct: 382 IIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFG 441
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
L+ +S SS + Y+ G I+ A D VS AMI+GY++ G+ EA++ F
Sbjct: 442 LEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVSLTAMINGYAEHGKSKEAIDLFE 501
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
K +G D VT + VL A + G LD G
Sbjct: 502 KSLKVGFRPDSVTFISVLTACTHSGQLDLG 531
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGP-----GAWILAKELQ 53
+I Y A +EAL F + + V D + VVL A G + A ++
Sbjct: 77 IIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQSSNIAYGESLHAYAVK 136
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L S Y SS Y G+I + R+ V+ A+I+G AGR+ E L
Sbjct: 137 TSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAIITGLVHAGRYKEGLTY 196
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
F ++ +D T + L A +G + +GK+
Sbjct: 197 FSEMSRSEELSDTYTFAIALKACAGLRQVKYGKA 230
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+I Y + G+ +A+E F K+ + V +E T + +A + + ++L + L
Sbjct: 281 LIVAYKRIGQEVKAVETFIKMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLG 340
Query: 58 LS-SYSLSSKTSR-YAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L+ S S+S+ + Y+ G + A RD +S +I GY QAG E + F
Sbjct: 341 LNDSLSVSNSMMKMYSTCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFS 400
Query: 107 KLESLGVHTDEVTMVVVLAASSGPG-----------ALDFG-KSNIFLTTAIIEMYAK 152
+ G + + +L+ S AL FG + N + +++I MY+K
Sbjct: 401 WMRQSGTKPTDFALASLLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSK 458
>sp|Q9MAT2|PPR10_ARATH Pentatricopeptide repeat-containing protein At1g04840
OS=Arabidopsis thaliana GN=PCMP-H64 PE=2 SV=1
Length = 665
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 22/154 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
+I+G+SQ G + A+ + ++ G+ +E T+ VL+A S GA +IL
Sbjct: 264 LINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNG 323
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++++ + + + YA G + A +D +S AMI G++ GRF++A+
Sbjct: 324 IKLDRAIGT----ALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAI 379
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136
+ F ++ G DEV + VL A +D G
Sbjct: 380 QCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLG 413
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 34/180 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL-- 58
++ Y++ G+ A + F + D + +L + + AK++ + L
Sbjct: 167 LVDMYAKTGQLKHAFQVFEE------SPDRIKKESILIWNVLINGYCRAKDMHMATTLFR 220
Query: 59 -----SSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+S S S+ Y SG + A+ + VS +I+G+SQ G + A+
Sbjct: 221 SMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAIST 280
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ ++ G+ +E T+ VL+A S GAL G K + + TA+++MYAK
Sbjct: 281 YFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAK 340
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG------AL 133
R+P A+I G ++ RF ++ F + LGV D +T VL ++S G AL
Sbjct: 89 RNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRAL 148
Query: 134 ------DFGKSNIFLTTAIIEMYAK 152
+F + F+ ++++MYAK
Sbjct: 149 HAATLKNFVDCDSFVRLSLVDMYAK 173
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-AW----ILAKELQIE 55
+I G ++ RF ++ F + LGV D +T VL ++S G W + A L+
Sbjct: 97 LIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLKNF 156
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA 79
+D S+ S YA +G+++ A
Sbjct: 157 VDCDSFVRLSLVDMYAKTGQLKHA 180
>sp|O80647|PP195_ARATH Pentatricopeptide repeat-containing protein At2g39620
OS=Arabidopsis thaliana GN=PCMP-E33 PE=3 SV=1
Length = 836
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MI+ Y QAG+ +EA+ F + + + + VT+ VL +G A L K + I+ D
Sbjct: 372 MIASYEQAGQHDEAISLFRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKAD 431
Query: 58 LSSY--SLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ S + ++ S YA GR A +D V+ A+ GY+Q G N+A + +
Sbjct: 432 IESELETATAVISMYAKCGRFSPALKAFERLPIKDAVAFNALAQGYTQIGDANKAFDVYK 491
Query: 107 KLESLGVHTDEVTMVVVLAASS-----GPGALDFGK-------SNIFLTTAIIEMYAK 152
++ GV D TMV +L + G+ +G+ S + A+I M+ K
Sbjct: 492 NMKLHGVCPDSRTMVGMLQTCAFCSDYARGSCVYGQIIKHGFDSECHVAHALINMFTK 549
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 78/180 (43%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M++ Y+ G F E LE F + + V ++V L A++ G L K + I
Sbjct: 271 MMAAYAHNGFFEEVLELFDLMRNYDVRMNKVAAASALQAAAYVGD--LVKGIAIHDYAVQ 328
Query: 61 YSL-------SSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
L +S S Y+ G + +A RD VS AMI+ Y QAG+ +EA+
Sbjct: 329 QGLIGDVSVATSLMSMYSKCGELEIAEQLFINIEDRDVVSWSAMIASYEQAGQHDEAISL 388
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
F + + + + VT+ VL +G A GK S + TA+I MYAK
Sbjct: 389 FRDMMRIHIKPNAVTLTSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAK 448
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 19/90 (21%)
Query: 80 RDP--VSCKAMISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLAASSGPGALDFG 136
RDP V +MI GY++AG EAL FG + E G+ D+ + L A + G++DF
Sbjct: 60 RDPGVVLWNSMIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACA--GSMDFK 117
Query: 137 K--------------SNIFLTTAIIEMYAK 152
K S++++ TA++EMY K
Sbjct: 118 KGLRIHDLIAEMGLESDVYIGTALVEMYCK 147
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSG-----PGAWI--LAKEL 52
MI GY++AG EAL FG + E G+ D+ + L A +G G I L E+
Sbjct: 70 MIRGYTRAGLHREALGFFGYMSEEKGIDPDKYSFTFALKACAGSMDFKKGLRIHDLIAEM 129
Query: 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALE 103
+E D+ Y ++ Y + + AR D V+ M+SG +Q G + AL
Sbjct: 130 GLESDV--YIGTALVEMYCKARDLVSARQVFDKMHVKDVVTWNTMVSGLAQNGCSSAALL 187
Query: 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALD---------FGKSNIF-LTTAIIEMYAK 152
F + S V D V++ ++ A S D K IF ++ +I+MY
Sbjct: 188 LFHDMRSCCVDIDHVSLYNLIPAVSKLEKSDVCRCLHGLVIKKGFIFAFSSGLIDMYCN 246
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 83/179 (46%), Gaps = 27/179 (15%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++S YS +G+ E LE F ++ G + T+V LTA G L KE+ + SS
Sbjct: 255 ILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSS 314
Query: 61 ------YSLSSKTSRYAHSGRI----RLAR-----DPVSCKAMISGYSQAGRFNEALEPF 105
Y ++ + Y G++ R+ R D V+ ++I GY Q + EALE F
Sbjct: 315 THSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFF 374
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
+ + G +DEV+M ++AAS L G SN+ + +I+MY+K
Sbjct: 375 SDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSK 433
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I GY Q + EALE F + + G +DEV+M ++ AS + EL
Sbjct: 357 LIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHG 416
Query: 54 ----IELDLSSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFG 106
+++ + + SK + + GR L +D +S +I+GY+Q EALE F
Sbjct: 417 WDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFR 476
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ + DE+ + +L ASS
Sbjct: 477 DVAKKRMEIDEMILGSILRASS 498
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 25/176 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----- 55
+I+GY+Q EALE F + + DE+ + +L ASS + ++ KE+
Sbjct: 458 VIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517
Query: 56 -LDL----SSYSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGK 107
LD + K ++ R+ + +D VS +MIS + G +EA+E F +
Sbjct: 518 LLDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRR 577
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS-NIFL-----------TTAIIEMYA 151
+ G+ D V ++ +L+A++ AL+ G+ + +L A+++MYA
Sbjct: 578 MVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYA 633
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
RDP++ AMISGY+Q G EAL F ++ GV + V M+ VL+A + GALD G
Sbjct: 203 RDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWA 262
Query: 137 ---------KSNIFLTTAIIEMYAK 152
K + L T ++++YAK
Sbjct: 263 HSYIERNKIKITVRLATTLVDLYAK 287
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 22/158 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
MISGY+Q G EAL F ++ GV + V M+ VL+A + GA +I +
Sbjct: 211 MISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNK 270
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEAL 102
++I + L+ ++ YA G + A ++ + + ++G + G + L
Sbjct: 271 IKITVRLA----TTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCL 326
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNI 140
E F ++ GV + VT V VL S G +D G+ +
Sbjct: 327 ELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHF 364
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-ASSGP----GAWILAKELQIE 55
MISG+++ G EA+ F ++ G DE T+ VLT SS P G I L+
Sbjct: 522 MISGFNEYGYLREAIGLFSEMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAG 581
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
+D S+ + Y+ G ++LAR DPVSC ++ISGYSQ G + F
Sbjct: 582 IDKGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFR 641
Query: 107 KLESLGVHTDEVTMVVVLAASS 128
+ G D + +L A++
Sbjct: 642 DMVMSGFTMDSFAISSILKAAA 663
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 14/148 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
+ISGYSQ G + F + G D + +L A+ S GA + A +I
Sbjct: 623 LISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKAAALSDESSLGAQVHAYITKIG 682
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L SS + Y+ G I D ++ A+I+ Y+Q G+ NEAL+ +
Sbjct: 683 LCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYN 742
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALD 134
++ G D+VT V VL+A S G ++
Sbjct: 743 LMKEKGFKPDKVTFVGVLSACSHGGLVE 770
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 23/175 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG------AWILAKELQI 54
MI+ +SQ+ + +A+ F ++ G+ TDE ++ +L+ + L L +
Sbjct: 424 MITSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCLNLGKQVHGYTLKSGLVL 483
Query: 55 ELDLSS--YSLSSKTSRYAHSGRIRLA---RDPVSCKAMISGYSQAGRFNEALEPFGKLE 109
+L + S ++L SK S ++ +D +MISG+++ G EA+ F ++
Sbjct: 484 DLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEML 543
Query: 110 SLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
G DE T+ VL S +L GK + L +A++ MY+K
Sbjct: 544 DDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSK 598
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD 57
MISGY Q F E+L F K+ LG +E++ V++A S A + ++ + I++
Sbjct: 121 MISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMG 180
Query: 58 LSSYSLS--------SKTSRYAHSGRIRLARDPVS----C-KAMISGYSQAGRFNEALEP 104
Y + SK R+ + ++ RD +S C +I+G + + +
Sbjct: 181 YFFYEVVESALIDVFSKNLRFEDAYKV--FRDSLSANVYCWNTIIAGALRNQNYGAVFDL 238
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
F ++ D T VLAA + L FGK ++F+ TAI+++YAK
Sbjct: 239 FHEMCVGFQKPDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAK 297
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 18/152 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SGY+++ ALE F ++ GV + T+ V++A P A ++ + S
Sbjct: 322 MLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAWVFKSG 381
Query: 61 YSLSSKT-----SRYAHSGRIRLAR------DPVS----CKAMISGYSQAGRFNEALEPF 105
+ L S S Y+ SG I L+ D + MI+ +SQ+ + +A+ F
Sbjct: 382 FYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMITSFSQSKKPGKAIRLF 441
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
++ G+ TDE ++ +L+ L+ GK
Sbjct: 442 TRMLQEGLRTDEFSVCSLLSVLD---CLNLGK 470
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129
D VSC MISGY Q F E+L F K+ LG +E++ V++A S
Sbjct: 114 DVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSA 162
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 12/82 (14%)
Query: 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG------ 136
VS M+SGY+++ ALE F ++ GV + T+ V++A P +
Sbjct: 317 VSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVCEASQVHAW 376
Query: 137 --KSNIFLTT----AIIEMYAK 152
KS +L + A+I MY+K
Sbjct: 377 VFKSGFYLDSSVAAALISMYSK 398
>sp|Q9M2Y7|PP274_ARATH Pentatricopeptide repeat-containing protein At3g49710
OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1
Length = 721
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNE-ALEPFGKLESLGVHTDEVTMVVVLTASSG---PGAWILAKELQIEL 56
MISGYS +E A++ F +++ +G D+ + V V +A S P L I+
Sbjct: 315 MISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKS 374
Query: 57 DLSSYSLSSKT---SRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
+ S +S S Y SG ++ AR + VS MI GY+Q G EAL
Sbjct: 375 HIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEALLL 434
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ ++ G+ +++T V VL+A + G +D G+
Sbjct: 435 YQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQ 467
>sp|Q9C507|PP111_ARATH Putative pentatricopeptide repeat-containing protein At1g69350,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E66 PE=3
SV=1
Length = 787
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
+IS Y+ G +AL F ++ + + D T+ ++A G L K++ I D
Sbjct: 376 LISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTD 435
Query: 58 LSS-YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGK 107
+S + +S Y+ SG + A R V+ +M+ G+SQ G EA+ F
Sbjct: 436 VSDEFVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDY 495
Query: 108 LESLGVHTDEVTMVVVLAASSGPGALDFGK-----------SNIFLTTAIIEMYAK 152
+ + +EVT + V+ A S G+L+ GK ++F TA+I+MYAK
Sbjct: 496 MYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLKDLFTDTALIDMYAK 551
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 16/153 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL---- 56
++S + G +AL F + GV D VTM+ V+ + G +A+ + ++
Sbjct: 173 LVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITRKM 232
Query: 57 -DLSSYSLSSKTSRYAHSGRI--------RLAR-DPVSCKAMISGYSQAGRFNE-ALEPF 105
DL +S + Y+ G + ++A+ + VS AMIS Y++ G F+E AL F
Sbjct: 233 FDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNR-GEFSEKALRSF 291
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ G+ + VT+ VL++ G + GKS
Sbjct: 292 SEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKS 324
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD V+ ++S + G +AL F + GV D VTM+ V+ + G L +S
Sbjct: 165 RDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSV 224
Query: 139 ------NIF-----LTTAIIEMYAK 152
+F L +++ MY+K
Sbjct: 225 HGQITRKMFDLDETLCNSLLTMYSK 249
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIE 55
MISGY QA EAL+ F ++++ V D V++ L+A + GA WI + +
Sbjct: 218 MISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTR 277
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ + S YA G + A + + A+ISGY+ G EA+ F
Sbjct: 278 IRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFM 337
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+++ +G+ + +T VL A S G ++ GK
Sbjct: 338 EMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 22/174 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL-DLS 59
++ S F E + ++ LG D + ++ + + G + LA L + +
Sbjct: 121 LLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPD 180
Query: 60 SYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLES 110
S +S Y +G++ +A ++ +S MISGY QA EAL+ F ++++
Sbjct: 181 DVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQN 240
Query: 111 LGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
V D V++ L+A + GAL+ GK + L +I+MYAK
Sbjct: 241 SDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAK 294
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 77/151 (50%), Gaps = 14/151 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISGYS G F +A+E F +++ + + VT+V VL A S G+ L + L + + S
Sbjct: 245 MISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSG 304
Query: 61 YSL-----SSKTSRYAHSGRI--------RLARDPV-SCKAMISGYSQAGRFNEALEPFG 106
+ S+ Y+ G I RL R+ V + AMI+G++ G+ +A++ F
Sbjct: 305 IRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFC 364
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
K+ GV +V + +L A S G ++ G+
Sbjct: 365 KMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG--- 136
R VS MISGYS G F +A+E F +++ + + VT+V VL A S G+L+ G
Sbjct: 237 RSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWL 296
Query: 137 ---------KSNIFLTTAIIEMYAK 152
+ + L +A+I+MY+K
Sbjct: 297 HLYAEDSGIRIDDVLGSALIDMYSK 321
>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2
SV=1
Length = 1028
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M+SG+SQ G + EAL+ + ++ GV D+ T V VL S G I + +
Sbjct: 703 MMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLA 762
Query: 56 LDLSSYSLSSKTSRYAHSG----------RIRLARDPVSCKAMISGYSQAGRFNEALEPF 105
DL + ++ YA G +R + VS ++I+GY++ G +AL+ F
Sbjct: 763 HDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIF 822
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
+ + DE+T + VL A S G + G+
Sbjct: 823 DSMRQSHIMPDEITFLGVLTACSHAGKVSDGR 854
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 81/178 (45%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA-----SSGPGAWILAKELQIE 55
MISG+ + G A+E F + V + T+ VL+A + G + A+ +++
Sbjct: 298 MISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLG 357
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + Y SS S Y+ ++ A ++ V AMI GY+ G ++ +E F
Sbjct: 358 LASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFM 417
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
++S G + D+ T +L+ + L+ G N+F+ A+++MYAK
Sbjct: 418 DMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAK 475
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GYSQ EA+ F ++ + GV+ E+T ++ A P + L + ++
Sbjct: 601 LIAGYSQ-NNLEEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRG 659
Query: 61 YS--------------LSSK--TSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104
+S ++S+ T A + + V M+SG+SQ G + EAL+
Sbjct: 660 FSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKF 719
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK---SNIF---------LTTAIIEMYAK 152
+ ++ GV D+ T V VL S +L G+ S IF + +I+MYAK
Sbjct: 720 YKEMRHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAK 779
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWILAKELQIE 55
M+S YS G+ + L F L + ++ T +VL+ + G I +++
Sbjct: 131 MLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMG 190
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR-------DP--VSCKAMISGYSQAGRFNEALEPFG 106
L+ +SY + YA RI AR DP V + SGY +AG EA+ F
Sbjct: 191 LERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFE 250
Query: 107 KLESLGVHTDEVTMVVVL 124
++ G D + V V+
Sbjct: 251 RMRDEGHRPDHLAFVTVI 268
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 51/173 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+ SGY +AG EA+ F ++ G D + V V+
Sbjct: 232 LFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINT--------------------- 270
Query: 61 YSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111
Y G+++ AR D V+ MISG+ + G A+E F +
Sbjct: 271 ---------YIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKS 321
Query: 112 GVHTDEVTMVVVLAASSGPGALDFG------------KSNIFLTTAIIEMYAK 152
V + T+ VL+A LD G SNI++ ++++ MY+K
Sbjct: 322 SVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSK 374
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
L +D + +M+S YS G+ + L F L + ++ T +VL+ + ++FG+
Sbjct: 121 LEKDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGR 180
Query: 138 S------------NIFLTTAIIEMYAK 152
N + A+++MYAK
Sbjct: 181 QIHCSMIKMGLERNSYCGGALVDMYAK 207
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 15/155 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIE 55
+ISGY+Q EA++ F ++ +LG+ D V +V L+A + G W K + +
Sbjct: 220 LISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKR 279
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
L + S+ + YA G I A + + AMI+G + G ++ F
Sbjct: 280 LFIDSFLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFR 339
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIF 141
K+ S G+ D VT + VL S G +D + N+F
Sbjct: 340 KMVSSGIKPDGVTFISVLVGCSHSGLVDEAR-NLF 373
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS- 138
RD VS ++ISGY+Q EA++ F ++ +LG+ D V +V L+A + G GK+
Sbjct: 212 RDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAI 271
Query: 139 -----------NIFLTTAIIEMYAK 152
+ FL T +++ YAK
Sbjct: 272 HDYTKRKRLFIDSFLATGLVDFYAK 296
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 14/159 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
M+ GY Q GR EA++ F ++ G+ D T+ ++A + G+ K +
Sbjct: 342 MVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSG 401
Query: 56 LDLSSYSLSSKTSRYAHSGRI----RL-----ARDPVSCKAMISGYSQAGRFNEALEPFG 106
L +S + Y G I RL RD VS AM+S Y+Q GR E ++ F
Sbjct: 402 LIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFD 461
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTA 145
K+ G+ D VT+ V++A S G ++ G+ L T+
Sbjct: 462 KMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G +Q G EA+E F +++ G+ D+ VL A G GA K++ + ++
Sbjct: 241 MIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTN 300
Query: 61 YS-------------LSSKTSRYAHSGRIRLA-RDPVSCKAMISGYSQAGRFNEALEPFG 106
+ K YA + R+ ++ VS AM+ GY Q GR EA++ F
Sbjct: 301 FQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFL 360
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ G+ D T+ ++A + +L+ G
Sbjct: 361 DMQRSGIDPDHYTLGQAISACANVSSLEEG 390
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 84/209 (40%), Gaps = 57/209 (27%)
Query: 1 MISGYSQAGRFNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IEL 56
+I GYS +G A++ + + + VT++ +L SS G L K++ I+L
Sbjct: 109 LIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKL 168
Query: 57 DLSSYSL--SSKTSRYAHSGRIR------------------------------------- 77
SY L S YA+ G I
Sbjct: 169 GFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF 228
Query: 78 --LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135
+ +D VS AMI G +Q G EA+E F +++ G+ D+ VL A G GA++
Sbjct: 229 RGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINE 288
Query: 136 GK------------SNIFLTTAIIEMYAK 152
GK +I++ +A+I+MY K
Sbjct: 289 GKQIHACIIRTNFQDHIYVGSALIDMYCK 317
>sp|Q0WNP3|PP319_ARATH Pentatricopeptide repeat-containing protein At4g18520
OS=Arabidopsis thaliana GN=PCMP-A2 PE=2 SV=1
Length = 617
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+ +++ G EA+ F ++ + + +T+V +L A GA +L KEL ++ +S
Sbjct: 356 IIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKELHAQIIKNS 415
Query: 61 -----YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y S+ Y G R A RD VS AMISG S G +EAL+
Sbjct: 416 IEKNVYIGSTLVWLYCKCGESRDAFNVLQQLPSRDVVSWTAMISGCSSLGHESEALDFLK 475
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ GV + T L A + +L G+ SN+F+ +A+I MYAK
Sbjct: 476 EMIQEGVEPNPFTYSSALKACANSESLLIGRSIHSIAKKNHALSNVFVGSALIHMYAK 533
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 17/149 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MISG S G +EAL+ ++ GV + T L A + + ++ + + + +
Sbjct: 457 MISGCSSLGHESEALDFLKEMIQEGVEPNPFTYSSALKACANSESLLIGRSIH-SIAKKN 515
Query: 61 YSLSSK------TSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPF 105
++LS+ YA G + A ++ VS KAMI GY++ G EAL+
Sbjct: 516 HALSNVFVGSALIHMYAKCGFVSEAFRVFDSMPEKNLVSWKAMIMGYARNGFCREALKLM 575
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALD 134
++E+ G D+ +L ++ G LD
Sbjct: 576 YRMEAEGFEVDDYIFATIL-STCGDIELD 603
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
R+ V+ ++I+ +++ G EA+ F ++ + + +T+V +L A GAL GK
Sbjct: 348 RNTVTWTSIIAAHAREGFGEEAISLFRIMKRRHLIANNLTVVSILRACGSVGALLLGKEL 407
Query: 138 ----------SNIFLTTAIIEMYAK 152
N+++ + ++ +Y K
Sbjct: 408 HAQIIKNSIEKNVYIGSTLVWLYCK 432
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+SG++Q R EAL F + G +E + VL+A SG + K +Q+ ++
Sbjct: 123 MVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLND--MNKGVQVHSLIAK 180
Query: 61 -------YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEP 104
Y S+ Y+ G + A R+ VS ++I+ + Q G EAL+
Sbjct: 181 SPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDV 240
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFG-------------KSNIFLTTAIIEMYA 151
F + V DEVT+ V++A + A+ G +++I L+ A ++MYA
Sbjct: 241 FQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYA 300
Query: 152 K 152
K
Sbjct: 301 K 301
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 20/157 (12%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
+I+GY+Q G EAL F L+ V + +L A + L + + +
Sbjct: 357 LIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHG 416
Query: 61 YSL-----------SSKTSRYAHSG---------RIRLARDPVSCKAMISGYSQAGRFNE 100
+ +S Y G R + RD VS AMI G++Q G NE
Sbjct: 417 FKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNE 476
Query: 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137
ALE F ++ G D +TM+ VL+A G ++ G+
Sbjct: 477 ALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGR 513
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD + +M+SG++Q R EAL F + G +E + VL+A SG ++ G
Sbjct: 115 RDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQV 174
Query: 138 ----------SNIFLTTAIIEMYAK 152
S++++ +A+++MY+K
Sbjct: 175 HSLIAKSPFLSDVYIGSALVDMYSK 199
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 80/216 (37%), Gaps = 64/216 (29%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
+I+ + Q G EAL+ F + V DEVT+ V++A + A + +E+
Sbjct: 224 LITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKND 283
Query: 54 -----IELDLSSYSLSSKTSR-------------------------YAHSGRIRLAR--- 80
I L + + +K SR YA + + AR
Sbjct: 284 KLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMF 343
Query: 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134
+ VS A+I+GY+Q G EAL F L+ V + +L A + L
Sbjct: 344 TKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELH 403
Query: 135 FG------------------KSNIFLTTAIIEMYAK 152
G + +IF+ ++I+MY K
Sbjct: 404 LGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVK 439
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MI Y Q EA+ F K+ GV +V+++ L A + G +I +++
Sbjct: 308 MIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELG 367
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
LD + ++S S Y + A R VS AMI G++Q GR +AL F
Sbjct: 368 LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ S V D T V V+ A + K N+F+TTA+++MYAK
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAK 485
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-----SGPGAWILAKELQIE 55
MI G++Q GR +AL F ++ S V D T V V+TA + WI ++
Sbjct: 409 MILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSC 468
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
LD + + ++ YA G I +AR + AMI GY G ALE F
Sbjct: 469 LDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFE 528
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFL 142
+++ + + VT + V++A S G ++ G ++
Sbjct: 529 EMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYM 564
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 30/180 (16%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ------- 53
M+ G+++ ++AL+ F ++ V +L + KE+
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 54 IELDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEP 104
LDL ++++ + YA ++ AR D VS +++GYSQ G ALE
Sbjct: 166 FSLDL--FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEM 223
Query: 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
+ + +T+V VL A S + GK S + ++TA+++MYAK
Sbjct: 224 VKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 283
>sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760
OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1
Length = 583
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKE 51
++SG+ Q G +EA++ F ++ G D T V +L+A + GA +I+++
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238
Query: 52 LQIELDLSSYSLSSKTSRYAHSGRIRLARDPV------SCKAMISGYSQAGRFNEALEPF 105
L + + L + +L + SR G+ R D + + AMIS Y G +A+E F
Sbjct: 239 LDLNVKLGT-ALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELF 297
Query: 106 GKLE-SLGVHTDEVTMVVVLAASSGPGALDFGKS 138
K+E G + VT V VL+A + G ++ G+S
Sbjct: 298 NKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRS 331
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 21/116 (18%)
Query: 58 LSSYSLSSKTSRYAHSGRIRLARDP---------VSCKAMISGYSQAGRFNEALEPFGKL 108
L +Y ++ + Y+ G + AR V+ +++SG+ Q G +EA++ F ++
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199
Query: 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS------------NIFLTTAIIEMYAK 152
G D T V +L+A + GA+ G N+ L TA+I +Y++
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSR 255
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 15/153 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI G + G FNE+ F +L+ G+ +EV++ VL+A S G++ K L ++ +
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAG 299
Query: 61 YSL-----SSKTSRYAHSGRIRLA----------RDPVSCKAMISGYSQAGRFNEALEPF 105
YS ++ Y+ G + +A R VS +MI+G + G+ EA+ F
Sbjct: 300 YSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLF 359
Query: 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++ + GV D ++ + +L A S G ++ G+
Sbjct: 360 NEMTAYGVTPDGISFISLLHACSHAGLIEEGED 392
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK-- 137
RD VS MI G + G FNE+ F +L+ G+ +EV++ VL+A S G+ +FGK
Sbjct: 232 RDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKIL 291
Query: 138 ----------SNIFLTTAIIEMYAK 152
+ + A+I+MY++
Sbjct: 292 HGFVEKAGYSWIVSVNNALIDMYSR 316
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
MI+GY+Q ++AL F ++ G+ +DEV + ++A +G A +++ + +S
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSG 621
Query: 61 YS-----LSSKTSRYAHSGRIRL---------ARDPVSCKAMISGYSQAGRFNEALEPFG 106
+S ++ + Y+ G+I A D ++ A++SG+ Q+G EAL F
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ + T + A+S + GK S + A+I MYAK
Sbjct: 682 RMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAK 739
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
++SG+ Q+G EAL F ++ G+ + T + A+S K++ + +
Sbjct: 663 LVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTG 722
Query: 61 YSLSSKT-----SRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
Y ++ S YA G I A ++ VS A+I+ YS+ G +EAL+ F
Sbjct: 723 YDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFD 782
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFG 136
++ V + VT+V VL+A S G +D G
Sbjct: 783 QMIHSNVRPNHVTLVGVLSACSHIGLVDKG 812
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ---IELD 57
MISG S+ EA+ F + LG+ VL+A + + ++L ++L
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318
Query: 58 LSS--YSLSSKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFG 106
SS Y ++ S Y H G + A RD V+ +I+G SQ G +A+E F
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ G+ D T+ ++ A S G L G+ SN + A++ +YAK
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 44 GAWILAKELQIELDLSSYSLSSKTSRYAHSGR--------IRLA-RDPVSCKAMISGYSQ 94
G I ++ ++ L++Y S YA G+ IR A +D VS MI+GY+Q
Sbjct: 509 GEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQ 568
Query: 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138
++AL F ++ G+ +DEV + ++A +G AL G+
Sbjct: 569 YNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQ 612
>sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170
OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
Length = 990
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-----PGAWILAKELQIE 55
MISG + G A F ++ +GV DE T+ + ASS G I A L++
Sbjct: 589 MISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLN 648
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLARDPVSC-------------KAMISGYSQAGRFNEAL 102
+ +S YA G I D C AM+ G +Q G E L
Sbjct: 649 CTNDPFVGTSLVDMYAKCGSI----DDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETL 704
Query: 103 EPFGKLESLGVHTDEVTMVVVLAASSGPG 131
+ F +++SLG+ D+VT + VL+A S G
Sbjct: 705 QLFKQMKSLGIKPDKVTFIGVLSACSHSG 733
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 26/178 (14%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS-----GPGAWILAKELQIE 55
M++GY+Q+ ++ L+ F + G +D+ T+ V G + A ++
Sbjct: 488 MMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSG 547
Query: 56 LDLSSYSLSSKTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFG 106
DL + S Y G + A+ D V+ MISG + G A F
Sbjct: 548 YDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFS 607
Query: 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGK------------SNIFLTTAIIEMYAK 152
++ +GV DE T+ + ASS AL+ G+ ++ F+ T++++MYAK
Sbjct: 608 QMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAK 665
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 30/165 (18%)
Query: 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS 60
M+ Y + G EA++ S G++ +E+T+ ++ S
Sbjct: 217 MLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDD----------------- 259
Query: 61 YSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120
S + + +A+ + + +S Y +G+++ L+ F + V D+VT
Sbjct: 260 -SDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTF 318
Query: 121 VVVLAASSGPGALDFGKS----------NIFLT--TAIIEMYAKM 153
+++LA + +L G+ ++ LT ++I MY K+
Sbjct: 319 ILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKL 363
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,978,729
Number of Sequences: 539616
Number of extensions: 1980251
Number of successful extensions: 5919
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 4627
Number of HSP's gapped (non-prelim): 920
length of query: 153
length of database: 191,569,459
effective HSP length: 107
effective length of query: 46
effective length of database: 133,830,547
effective search space: 6156205162
effective search space used: 6156205162
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)