Query 039275
Match_columns 153
No_of_seqs 110 out of 1370
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:05:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.1E-32 2.4E-37 217.8 12.3 153 1-153 296-475 (697)
2 PLN03218 maturation of RBCL 1; 100.0 4.4E-31 9.6E-36 213.8 14.1 153 1-153 513-697 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 7.6E-31 1.6E-35 207.4 12.5 153 1-153 195-373 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.3E-31 1.8E-35 211.1 12.6 153 1-153 259-437 (857)
5 PLN03218 maturation of RBCL 1; 100.0 3.8E-30 8.3E-35 208.4 14.4 152 1-152 443-626 (1060)
6 PLN03077 Protein ECB2; Provisi 100.0 3.6E-30 7.7E-35 207.5 13.7 153 1-153 158-336 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 3.4E-17 7.5E-22 87.5 6.5 49 81-129 2-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-13 3.6E-18 73.1 4.6 42 1-42 9-50 (50)
9 PRK11788 tetratricopeptide rep 99.1 1.2E-09 2.6E-14 81.4 11.2 53 84-138 251-303 (389)
10 PRK11788 tetratricopeptide rep 99.1 4.4E-09 9.5E-14 78.3 13.4 136 2-138 114-270 (389)
11 TIGR00756 PPR pentatricopeptid 99.1 2.3E-10 4.9E-15 55.9 4.0 35 83-117 1-35 (35)
12 PF12854 PPR_1: PPR repeat 99.0 7.9E-10 1.7E-14 53.8 3.4 29 81-109 6-34 (34)
13 PF13812 PPR_3: Pentatricopept 99.0 1.3E-09 2.8E-14 53.0 4.2 33 83-115 2-34 (34)
14 KOG4422 Uncharacterized conser 98.9 2.2E-08 4.7E-13 74.3 10.9 131 5-135 125-330 (625)
15 KOG4422 Uncharacterized conser 98.9 1.4E-08 3.1E-13 75.2 8.7 127 1-127 213-362 (625)
16 TIGR02917 PEP_TPR_lipo putativ 98.9 9.6E-08 2.1E-12 77.1 13.7 134 3-138 575-724 (899)
17 PF12854 PPR_1: PPR repeat 98.8 4.5E-09 9.7E-14 51.1 3.2 31 24-54 1-31 (34)
18 TIGR02917 PEP_TPR_lipo putativ 98.8 1.6E-07 3.4E-12 75.9 13.7 133 3-138 609-757 (899)
19 PF01535 PPR: PPR repeat; Int 98.8 6.5E-09 1.4E-13 49.3 3.2 31 83-113 1-31 (31)
20 KOG4318 Bicoid mRNA stability 98.7 6.1E-08 1.3E-12 77.1 8.2 111 16-126 11-248 (1088)
21 TIGR00756 PPR pentatricopeptid 98.5 1.6E-07 3.5E-12 45.5 2.9 30 1-30 6-35 (35)
22 TIGR02521 type_IV_pilW type IV 98.5 8.2E-06 1.8E-10 55.7 12.0 134 3-138 39-190 (234)
23 TIGR02521 type_IV_pilW type IV 98.4 8.3E-06 1.8E-10 55.7 11.4 134 3-138 73-224 (234)
24 PF13429 TPR_15: Tetratricopep 98.4 4.6E-07 9.9E-12 64.9 4.7 135 3-138 118-269 (280)
25 PF13429 TPR_15: Tetratricopep 98.4 3.4E-06 7.5E-11 60.4 9.2 143 6-151 88-259 (280)
26 PF08579 RPM2: Mitochondrial r 98.3 2.9E-06 6.3E-11 52.1 6.6 71 2-72 32-116 (120)
27 PF13812 PPR_3: Pentatricopept 98.3 1E-06 2.2E-11 42.5 2.7 28 1-28 7-34 (34)
28 PRK15174 Vi polysaccharide exp 98.2 9.6E-05 2.1E-09 59.2 13.8 73 7-80 88-164 (656)
29 PRK15174 Vi polysaccharide exp 98.2 7.3E-05 1.6E-09 59.9 12.9 132 5-138 187-339 (656)
30 TIGR00990 3a0801s09 mitochondr 98.1 0.00014 3E-09 57.8 13.1 128 9-138 308-454 (615)
31 COG3071 HemY Uncharacterized e 98.1 0.00014 3.1E-09 53.7 11.5 135 2-138 194-382 (400)
32 PRK10747 putative protoheme IX 98.1 0.00011 2.3E-09 55.5 11.4 135 2-138 194-382 (398)
33 PRK09782 bacteriophage N4 rece 98.0 0.00017 3.7E-09 60.1 12.9 130 6-138 553-698 (987)
34 TIGR00990 3a0801s09 mitochondr 98.0 0.00019 4.2E-09 57.0 12.6 131 4-138 340-488 (615)
35 PRK12370 invasion protein regu 98.0 0.00036 7.9E-09 54.9 13.5 128 9-138 318-462 (553)
36 PF01535 PPR: PPR repeat; Int 97.9 6.8E-06 1.5E-10 38.5 2.0 26 1-26 6-31 (31)
37 TIGR00540 hemY_coli hemY prote 97.9 0.00029 6.2E-09 53.4 11.3 58 81-138 332-391 (409)
38 KOG4318 Bicoid mRNA stability 97.9 0.0001 2.2E-09 59.5 8.6 78 58-138 202-292 (1088)
39 PF08579 RPM2: Mitochondrial r 97.9 8.6E-05 1.9E-09 45.7 6.2 86 31-130 26-117 (120)
40 PF06239 ECSIT: Evolutionarily 97.8 0.00018 3.8E-09 49.4 7.9 113 15-135 34-156 (228)
41 PF10037 MRP-S27: Mitochondria 97.8 0.0003 6.5E-09 53.3 9.8 114 17-130 50-186 (429)
42 PRK09782 bacteriophage N4 rece 97.8 0.001 2.2E-08 55.6 13.5 129 6-138 520-664 (987)
43 KOG1840 Kinesin light chain [C 97.7 0.00088 1.9E-08 51.9 11.5 135 4-138 250-430 (508)
44 PRK11447 cellulose synthase su 97.7 0.00092 2E-08 56.9 11.7 131 3-138 581-732 (1157)
45 PF12921 ATP13: Mitochondrial 97.6 0.0021 4.6E-08 40.7 10.0 105 29-138 1-109 (126)
46 PRK11447 cellulose synthase su 97.6 0.0018 3.8E-08 55.3 12.3 100 37-138 580-692 (1157)
47 PRK12370 invasion protein regu 97.5 0.0031 6.8E-08 49.7 12.3 126 4-132 347-490 (553)
48 PRK14574 hmsH outer membrane p 97.5 0.0055 1.2E-07 50.4 13.5 134 4-138 301-471 (822)
49 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0016 3.4E-08 49.1 9.3 104 2-109 176-295 (395)
50 PRK10049 pgaA outer membrane p 97.4 0.0061 1.3E-07 49.9 12.9 49 89-138 366-414 (765)
51 KOG4626 O-linked N-acetylgluco 97.4 0.0032 7E-08 49.7 10.2 131 4-138 295-443 (966)
52 COG5010 TadD Flp pilus assembl 97.4 0.007 1.5E-07 42.6 11.0 111 27-138 97-223 (257)
53 KOG1840 Kinesin light chain [C 97.4 0.0038 8.3E-08 48.5 10.7 135 4-138 292-471 (508)
54 PF04733 Coatomer_E: Coatomer 97.4 0.0034 7.3E-08 45.5 9.7 98 38-138 110-222 (290)
55 PF10037 MRP-S27: Mitochondria 97.3 0.0009 2E-08 50.8 6.6 80 59-138 65-159 (429)
56 PRK10049 pgaA outer membrane p 97.3 0.0095 2.1E-07 48.8 12.8 132 3-138 23-171 (765)
57 PRK14574 hmsH outer membrane p 97.2 0.014 2.9E-07 48.2 12.8 130 4-138 43-190 (822)
58 KOG2003 TPR repeat-containing 97.2 0.012 2.6E-07 45.0 11.2 80 57-138 589-681 (840)
59 PRK10747 putative protoheme IX 97.2 0.018 3.9E-07 43.6 12.3 105 8-114 97-219 (398)
60 cd05804 StaR_like StaR_like; a 97.2 0.011 2.4E-07 43.5 11.0 133 5-138 53-207 (355)
61 PRK15359 type III secretion sy 97.1 0.021 4.4E-07 37.0 10.4 85 35-121 29-129 (144)
62 TIGR02552 LcrH_SycD type III s 97.1 0.019 4.1E-07 36.2 10.1 97 4-122 26-123 (135)
63 COG3063 PilF Tfp pilus assembl 97.1 0.019 4E-07 40.0 10.2 133 4-138 44-194 (250)
64 PF12895 Apc3: Anaphase-promot 97.0 0.0069 1.5E-07 35.2 6.8 82 7-107 1-83 (84)
65 KOG1129 TPR repeat-containing 97.0 0.0036 7.8E-08 45.9 6.4 132 3-137 231-378 (478)
66 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.03 6.5E-07 42.4 11.5 123 14-138 141-289 (395)
67 PRK10370 formate-dependent nit 96.9 0.038 8.3E-07 37.8 11.2 108 10-119 54-180 (198)
68 KOG2003 TPR repeat-containing 96.8 0.029 6.4E-07 43.0 10.5 124 9-134 572-711 (840)
69 PF12921 ATP13: Mitochondrial 96.8 0.0092 2E-07 37.8 6.7 58 81-138 1-73 (126)
70 TIGR03302 OM_YfiO outer membra 96.8 0.058 1.3E-06 37.4 11.3 135 3-138 41-224 (235)
71 KOG1126 DNA-binding cell divis 96.8 0.013 2.9E-07 46.2 8.5 50 87-138 562-612 (638)
72 COG4783 Putative Zn-dependent 96.7 0.046 1E-06 41.9 11.0 103 5-109 316-435 (484)
73 PRK11189 lipoprotein NlpI; Pro 96.7 0.078 1.7E-06 38.5 11.8 104 4-109 73-192 (296)
74 PF03704 BTAD: Bacterial trans 96.6 0.0066 1.4E-07 39.1 5.4 59 63-121 65-140 (146)
75 COG4783 Putative Zn-dependent 96.6 0.039 8.4E-07 42.3 10.0 118 3-127 348-472 (484)
76 PF04733 Coatomer_E: Coatomer 96.6 0.032 7E-07 40.5 9.3 124 4-134 111-252 (290)
77 KOG1070 rRNA processing protei 96.6 0.037 7.9E-07 47.5 10.2 130 2-132 1537-1686(1710)
78 COG5010 TadD Flp pilus assembl 96.5 0.037 8E-07 39.1 8.8 105 3-108 108-228 (257)
79 TIGR00540 hemY_coli hemY prote 96.5 0.097 2.1E-06 39.8 11.8 108 6-115 95-220 (409)
80 PLN03088 SGT1, suppressor of 96.5 0.099 2.1E-06 39.1 11.6 102 4-127 11-113 (356)
81 PF14559 TPR_19: Tetratricopep 96.5 0.015 3.3E-07 32.1 5.7 46 6-52 2-47 (68)
82 PF00637 Clathrin: Region in C 96.5 0.0096 2.1E-07 38.2 5.3 122 1-133 13-141 (143)
83 COG3071 HemY Uncharacterized e 96.4 0.034 7.3E-07 41.6 8.4 109 3-115 271-394 (400)
84 PF09976 TPR_21: Tetratricopep 96.4 0.08 1.7E-06 34.1 9.4 101 7-107 23-143 (145)
85 COG2956 Predicted N-acetylgluc 96.4 0.02 4.3E-07 41.9 7.0 133 5-138 117-270 (389)
86 KOG2076 RNA polymerase III tra 96.4 0.068 1.5E-06 43.8 10.6 132 5-138 150-301 (895)
87 PRK15179 Vi polysaccharide bio 96.4 0.13 2.8E-06 41.9 12.2 111 26-138 82-209 (694)
88 COG3063 PilF Tfp pilus assembl 96.4 0.099 2.2E-06 36.5 9.9 132 4-138 78-228 (250)
89 KOG1173 Anaphase-promoting com 96.4 0.047 1E-06 42.7 9.1 124 4-130 389-535 (611)
90 PF12569 NARP1: NMDA receptor- 96.3 0.13 2.8E-06 40.5 11.5 107 32-138 196-326 (517)
91 smart00299 CLH Clathrin heavy 96.3 0.14 2.9E-06 32.7 10.2 73 1-76 13-85 (140)
92 PF09976 TPR_21: Tetratricopep 96.3 0.074 1.6E-06 34.3 8.9 105 31-138 13-139 (145)
93 cd00189 TPR Tetratricopeptide 96.3 0.055 1.2E-06 30.5 7.6 88 3-110 8-96 (100)
94 PF04840 Vps16_C: Vps16, C-ter 96.3 0.036 7.8E-07 40.8 7.9 70 38-107 185-262 (319)
95 KOG0547 Translocase of outer m 96.3 0.054 1.2E-06 41.8 8.8 123 4-128 124-262 (606)
96 PRK15359 type III secretion sy 96.2 0.029 6.3E-07 36.2 6.6 75 63-138 27-113 (144)
97 KOG1155 Anaphase-promoting com 96.2 0.089 1.9E-06 40.4 9.6 132 5-138 272-453 (559)
98 PRK11189 lipoprotein NlpI; Pro 96.1 0.34 7.4E-06 35.2 12.5 131 4-138 107-257 (296)
99 KOG4626 O-linked N-acetylgluco 96.1 0.14 3E-06 41.0 10.3 133 3-138 328-477 (966)
100 PF04840 Vps16_C: Vps16, C-ter 96.0 0.052 1.1E-06 40.0 7.5 67 66-138 183-258 (319)
101 KOG3616 Selective LIM binding 96.0 0.07 1.5E-06 43.5 8.5 134 3-150 773-918 (1636)
102 TIGR02795 tol_pal_ybgF tol-pal 95.9 0.14 3E-06 31.1 8.5 92 3-112 10-106 (119)
103 KOG3941 Intermediate in Toll s 95.9 0.11 2.4E-06 37.6 8.6 75 53-133 100-174 (406)
104 KOG1128 Uncharacterized conser 95.9 0.053 1.2E-06 43.5 7.7 134 2-138 431-608 (777)
105 TIGR03302 OM_YfiO outer membra 95.9 0.19 4.1E-06 34.9 10.0 109 3-111 78-232 (235)
106 KOG0553 TPR repeat-containing 95.9 0.22 4.7E-06 36.1 10.1 102 5-129 91-194 (304)
107 KOG2376 Signal recognition par 95.9 0.098 2.1E-06 41.2 8.9 107 2-111 19-139 (652)
108 KOG3081 Vesicle coat complex C 95.9 0.25 5.5E-06 35.3 10.1 119 15-138 93-228 (299)
109 KOG1126 DNA-binding cell divis 95.9 0.037 8.1E-07 43.7 6.6 28 81-108 420-447 (638)
110 TIGR02552 LcrH_SycD type III s 95.8 0.043 9.3E-07 34.6 5.8 86 31-138 18-106 (135)
111 PRK10370 formate-dependent nit 95.8 0.37 8.1E-06 32.9 11.4 122 3-138 24-165 (198)
112 PF07035 Mic1: Colon cancer-as 95.6 0.36 7.9E-06 32.1 9.7 93 14-108 13-115 (167)
113 PRK02603 photosystem I assembl 95.6 0.39 8.5E-06 31.8 10.7 118 4-133 44-167 (172)
114 PF14559 TPR_19: Tetratricopep 95.6 0.053 1.2E-06 29.8 5.0 44 93-138 2-46 (68)
115 cd00189 TPR Tetratricopeptide 95.6 0.038 8.3E-07 31.2 4.6 55 83-138 35-89 (100)
116 PF14938 SNAP: Soluble NSF att 95.5 0.5 1.1E-05 34.1 11.1 74 62-138 137-217 (282)
117 PRK15179 Vi polysaccharide bio 95.5 0.4 8.6E-06 39.2 11.4 105 5-111 96-217 (694)
118 cd05804 StaR_like StaR_like; a 95.4 0.6 1.3E-05 34.4 11.4 76 35-110 119-214 (355)
119 PF13432 TPR_16: Tetratricopep 95.4 0.048 1E-06 29.8 4.4 49 3-52 5-53 (65)
120 KOG1915 Cell cycle control pro 95.4 0.48 1E-05 36.8 10.7 128 8-138 86-228 (677)
121 PF06239 ECSIT: Evolutionarily 95.2 0.033 7.1E-07 38.5 3.9 41 12-52 120-161 (228)
122 CHL00033 ycf3 photosystem I as 95.2 0.51 1.1E-05 31.1 9.7 48 5-52 45-94 (168)
123 PF03704 BTAD: Bacterial trans 95.2 0.052 1.1E-06 34.9 4.7 59 3-62 70-138 (146)
124 COG2956 Predicted N-acetylgluc 95.2 0.89 1.9E-05 33.6 11.8 111 1-111 147-278 (389)
125 PF12688 TPR_5: Tetratrico pep 95.2 0.41 9E-06 30.0 8.5 103 4-128 10-117 (120)
126 KOG0985 Vesicle coat protein c 94.8 0.75 1.6E-05 39.1 10.8 123 5-138 1058-1187(1666)
127 PF05843 Suf: Suppressor of fo 94.7 0.62 1.3E-05 33.7 9.5 123 2-127 8-150 (280)
128 TIGR02795 tol_pal_ybgF tol-pal 94.6 0.35 7.7E-06 29.3 7.3 89 32-138 4-97 (119)
129 KOG4340 Uncharacterized conser 94.5 1.2 2.6E-05 32.7 10.3 130 6-138 155-331 (459)
130 KOG1155 Anaphase-promoting com 94.4 0.62 1.4E-05 36.0 9.1 133 3-138 338-487 (559)
131 KOG1173 Anaphase-promoting com 94.4 1.3 2.9E-05 35.0 10.9 75 5-80 254-332 (611)
132 PF12569 NARP1: NMDA receptor- 94.2 1.9 4E-05 34.2 11.7 28 82-109 143-170 (517)
133 PF13424 TPR_12: Tetratricopep 94.2 0.14 3E-06 29.0 4.3 55 84-138 7-67 (78)
134 KOG3616 Selective LIM binding 94.1 0.74 1.6E-05 37.9 9.3 61 90-152 740-803 (1636)
135 PF13176 TPR_7: Tetratricopept 93.9 0.16 3.5E-06 24.4 3.6 26 84-109 1-26 (36)
136 KOG0985 Vesicle coat protein c 93.8 0.68 1.5E-05 39.3 8.9 49 2-52 1140-1188(1666)
137 smart00299 CLH Clathrin heavy 93.7 0.86 1.9E-05 29.0 7.8 108 35-152 12-137 (140)
138 PF13414 TPR_11: TPR repeat; P 93.7 0.19 4.1E-06 27.7 4.2 55 82-138 3-59 (69)
139 PF13424 TPR_12: Tetratricopep 93.6 0.1 2.3E-06 29.5 3.0 43 60-102 5-66 (78)
140 PRK15363 pathogenicity island 93.5 0.77 1.7E-05 30.2 7.2 82 5-109 45-130 (157)
141 PF13432 TPR_16: Tetratricopep 93.2 0.27 5.8E-06 26.7 4.3 46 91-138 6-52 (65)
142 KOG2076 RNA polymerase III tra 93.0 0.87 1.9E-05 37.7 8.2 122 14-135 396-544 (895)
143 COG3629 DnrI DNA-binding trans 92.9 0.7 1.5E-05 33.4 7.0 69 61-129 154-239 (280)
144 KOG2047 mRNA splicing factor [ 92.9 1.9 4.1E-05 34.9 9.7 47 81-129 247-293 (835)
145 PF00637 Clathrin: Region in C 92.8 0.022 4.7E-07 36.6 -0.7 107 36-151 13-136 (143)
146 PF12895 Apc3: Anaphase-promot 92.8 0.09 1.9E-06 30.4 2.0 53 83-138 26-79 (84)
147 PF13371 TPR_9: Tetratricopept 92.8 0.94 2E-05 25.0 6.2 50 2-52 2-51 (73)
148 KOG2002 TPR-containing nuclear 92.8 0.59 1.3E-05 39.1 7.0 103 8-111 625-745 (1018)
149 PF13414 TPR_11: TPR repeat; P 92.5 0.37 8E-06 26.4 4.2 63 29-110 2-66 (69)
150 PF13374 TPR_10: Tetratricopep 92.4 0.52 1.1E-05 22.8 4.3 29 82-110 2-30 (42)
151 PRK10803 tol-pal system protei 92.3 1.2 2.7E-05 31.9 7.6 86 6-112 154-247 (263)
152 PF14938 SNAP: Soluble NSF att 92.2 0.6 1.3E-05 33.7 6.0 126 10-138 30-176 (282)
153 cd00923 Cyt_c_Oxidase_Va Cytoc 92.2 0.76 1.6E-05 27.7 5.3 58 10-67 22-83 (103)
154 PF02284 COX5A: Cytochrome c o 92.1 0.74 1.6E-05 28.0 5.2 55 13-67 28-86 (108)
155 KOG1070 rRNA processing protei 92.0 2.8 6.1E-05 36.9 10.2 55 82-137 1530-1584(1710)
156 PF11848 DUF3368: Domain of un 92.0 0.87 1.9E-05 23.5 4.9 38 89-126 9-46 (48)
157 PRK14720 transcript cleavage f 92.0 4.3 9.4E-05 34.4 11.2 131 2-138 38-170 (906)
158 PF13428 TPR_14: Tetratricopep 91.7 0.96 2.1E-05 22.6 5.1 34 83-118 2-35 (44)
159 KOG1174 Anaphase-promoting com 91.6 3.4 7.4E-05 31.8 9.3 47 90-138 342-389 (564)
160 KOG3785 Uncharacterized conser 91.6 1.9 4.2E-05 32.5 7.9 133 2-138 292-449 (557)
161 KOG2002 TPR-containing nuclear 91.4 1.2 2.6E-05 37.4 7.3 57 81-138 645-701 (1018)
162 KOG1129 TPR repeat-containing 91.0 1 2.2E-05 33.5 6.0 111 4-117 333-462 (478)
163 PLN03088 SGT1, suppressor of 91.0 0.88 1.9E-05 34.1 5.9 57 81-138 35-91 (356)
164 PF10366 Vps39_1: Vacuolar sor 91.0 0.76 1.7E-05 28.3 4.7 30 81-110 38-67 (108)
165 PRK14720 transcript cleavage f 90.7 7 0.00015 33.2 11.1 78 31-111 117-198 (906)
166 KOG3617 WD40 and TPR repeat-co 90.7 3.2 6.9E-05 34.9 8.9 38 6-52 811-848 (1416)
167 PRK02603 photosystem I assembl 90.6 2.4 5.2E-05 28.0 7.2 75 62-138 37-127 (172)
168 KOG3081 Vesicle coat complex C 90.4 4.9 0.00011 29.1 8.8 128 4-138 117-262 (299)
169 PF13371 TPR_9: Tetratricopept 90.4 0.57 1.2E-05 25.9 3.6 48 90-138 3-50 (73)
170 KOG0547 Translocase of outer m 90.2 3.4 7.3E-05 32.4 8.3 129 8-138 339-483 (606)
171 KOG2376 Signal recognition par 90.1 8.7 0.00019 30.9 11.6 108 3-131 384-506 (652)
172 PF12688 TPR_5: Tetratrico pep 90.0 3.3 7.2E-05 26.0 8.7 68 83-152 39-118 (120)
173 PRK04841 transcriptional regul 89.9 6.8 0.00015 32.9 10.8 134 5-138 462-633 (903)
174 KOG1125 TPR repeat-containing 89.8 3.8 8.3E-05 32.5 8.5 105 11-138 410-519 (579)
175 PF05843 Suf: Suppressor of fo 89.7 2.1 4.5E-05 30.9 6.8 107 31-138 2-128 (280)
176 PLN03098 LPA1 LOW PSII ACCUMUL 89.5 6.6 0.00014 30.5 9.4 47 4-52 84-134 (453)
177 KOG0495 HAT repeat protein [RN 89.5 8.9 0.00019 31.5 10.3 130 6-138 629-774 (913)
178 PRK10153 DNA-binding transcrip 89.1 10 0.00022 30.2 11.5 56 81-138 419-474 (517)
179 KOG4570 Uncharacterized conser 88.6 6.1 0.00013 29.4 8.3 44 95-138 113-156 (418)
180 COG4105 ComL DNA uptake lipopr 88.5 7.2 0.00016 27.9 12.9 133 5-138 44-225 (254)
181 PF11848 DUF3368: Domain of un 88.5 1.5 3.3E-05 22.6 4.0 37 3-39 10-46 (48)
182 CHL00033 ycf3 photosystem I as 88.5 4.7 0.0001 26.4 7.4 27 84-110 74-100 (168)
183 PF07079 DUF1347: Protein of u 88.3 6.5 0.00014 30.7 8.6 124 6-131 17-181 (549)
184 KOG1914 mRNA cleavage and poly 88.0 12 0.00026 29.9 10.6 112 7-138 378-493 (656)
185 PLN03098 LPA1 LOW PSII ACCUMUL 87.9 2 4.4E-05 33.2 5.8 56 81-138 74-133 (453)
186 KOG2053 Mitochondrial inherita 87.5 14 0.00031 31.1 10.5 72 6-78 54-128 (932)
187 PRK10803 tol-pal system protei 87.0 6.7 0.00015 28.2 7.8 64 84-150 182-247 (263)
188 PF13929 mRNA_stabil: mRNA sta 87.0 5.6 0.00012 29.0 7.3 58 81-138 201-259 (292)
189 KOG3785 Uncharacterized conser 86.9 6.1 0.00013 30.0 7.6 107 8-115 372-494 (557)
190 KOG3060 Uncharacterized conser 86.9 9.5 0.00021 27.5 9.0 30 81-110 153-182 (289)
191 PF13929 mRNA_stabil: mRNA sta 86.9 2.2 4.7E-05 31.1 5.2 57 24-80 196-258 (292)
192 PF04053 Coatomer_WDAD: Coatom 86.5 2 4.2E-05 33.3 5.2 94 6-109 272-374 (443)
193 PF09205 DUF1955: Domain of un 86.4 6.9 0.00015 25.4 9.8 124 6-138 13-141 (161)
194 KOG0548 Molecular co-chaperone 86.4 8.5 0.00018 30.4 8.4 101 4-127 11-114 (539)
195 KOG3941 Intermediate in Toll s 86.3 6.7 0.00015 28.8 7.4 51 81-131 66-121 (406)
196 TIGR03504 FimV_Cterm FimV C-te 86.3 1.8 3.9E-05 22.0 3.4 35 3-37 7-41 (44)
197 PF04053 Coatomer_WDAD: Coatom 86.3 2.1 4.6E-05 33.2 5.3 96 36-138 324-423 (443)
198 KOG2053 Mitochondrial inherita 85.7 7.2 0.00016 32.8 8.1 72 6-80 20-97 (932)
199 KOG1174 Anaphase-promoting com 85.4 6.8 0.00015 30.3 7.3 97 3-104 240-390 (564)
200 PRK10866 outer membrane biogen 85.3 11 0.00024 26.7 11.8 131 5-138 42-233 (243)
201 PF13170 DUF4003: Protein of u 85.1 7.1 0.00015 28.6 7.3 111 11-123 78-223 (297)
202 PF04184 ST7: ST7 protein; In 85.0 4.7 0.0001 31.7 6.4 49 4-52 268-317 (539)
203 KOG1538 Uncharacterized conser 84.7 2.8 6E-05 34.2 5.2 69 35-112 778-847 (1081)
204 PRK04841 transcriptional regul 84.5 11 0.00024 31.7 9.1 107 4-110 500-640 (903)
205 PRK15363 pathogenicity island 84.4 6 0.00013 26.1 6.0 57 81-138 68-124 (157)
206 KOG3060 Uncharacterized conser 84.4 13 0.00028 26.8 8.7 72 8-80 99-174 (289)
207 PF07721 TPR_4: Tetratricopept 84.4 2.1 4.6E-05 18.7 2.8 22 85-106 4-25 (26)
208 KOG2796 Uncharacterized conser 84.3 14 0.0003 27.0 8.3 116 6-123 188-325 (366)
209 PRK10564 maltose regulon perip 84.2 3 6.4E-05 30.5 4.9 45 81-125 256-300 (303)
210 PF13525 YfiO: Outer membrane 84.0 4.9 0.00011 27.4 5.8 49 4-52 14-64 (203)
211 PF14689 SPOB_a: Sensor_kinase 83.9 2.2 4.8E-05 23.3 3.3 25 86-110 27-51 (62)
212 KOG2280 Vacuolar assembly/sort 83.8 5.5 0.00012 32.8 6.6 52 28-80 713-764 (829)
213 PF00515 TPR_1: Tetratricopept 83.8 3.1 6.6E-05 19.1 4.3 29 83-111 2-30 (34)
214 KOG4570 Uncharacterized conser 83.0 1.9 4.1E-05 31.9 3.5 44 9-52 114-157 (418)
215 PF11207 DUF2989: Protein of u 82.8 6.5 0.00014 27.1 5.8 67 12-79 123-197 (203)
216 KOG1915 Cell cycle control pro 82.5 23 0.00049 28.1 9.9 131 7-138 378-528 (677)
217 PF10602 RPN7: 26S proteasome 82.1 7.2 0.00016 26.2 5.9 56 83-138 37-94 (177)
218 PF13431 TPR_17: Tetratricopep 82.1 1.7 3.7E-05 20.5 2.1 22 81-102 12-33 (34)
219 TIGR03504 FimV_Cterm FimV C-te 81.9 4.4 9.6E-05 20.5 3.7 25 88-112 5-29 (44)
220 KOG2610 Uncharacterized conser 81.5 21 0.00045 27.1 9.0 136 8-144 116-276 (491)
221 KOG2114 Vacuolar assembly/sort 81.4 3.1 6.6E-05 34.6 4.5 132 5-137 407-558 (933)
222 PF10602 RPN7: 26S proteasome 81.1 14 0.0003 24.8 8.5 89 3-109 44-140 (177)
223 PF13174 TPR_6: Tetratricopept 81.0 2.1 4.5E-05 19.3 2.3 24 88-111 6-29 (33)
224 KOG1156 N-terminal acetyltrans 80.9 20 0.00043 29.3 8.6 87 27-113 366-470 (700)
225 KOG4077 Cytochrome c oxidase, 80.1 8.9 0.00019 24.5 5.3 34 19-52 73-106 (149)
226 COG5107 RNA14 Pre-mRNA 3'-end 79.9 28 0.0006 27.5 10.1 122 4-128 406-546 (660)
227 KOG2280 Vacuolar assembly/sort 79.0 9.5 0.00021 31.5 6.4 105 25-138 679-791 (829)
228 PF09205 DUF1955: Domain of un 78.8 7.8 0.00017 25.1 4.8 47 5-52 96-142 (161)
229 cd07153 Fur_like Ferric uptake 78.6 6.5 0.00014 24.1 4.5 50 87-136 5-54 (116)
230 PF13525 YfiO: Outer membrane 78.0 19 0.00041 24.5 9.0 134 2-137 49-198 (203)
231 PF07719 TPR_2: Tetratricopept 76.9 5.7 0.00012 17.9 4.3 29 83-111 2-30 (34)
232 KOG1585 Protein required for f 76.7 21 0.00046 25.7 6.9 19 30-48 91-109 (308)
233 KOG3617 WD40 and TPR repeat-co 76.7 17 0.00037 30.9 7.2 98 4-107 737-851 (1416)
234 PF10300 DUF3808: Protein of u 76.4 35 0.00076 26.8 10.3 108 9-133 247-356 (468)
235 PF10579 Rapsyn_N: Rapsyn N-te 76.3 7.1 0.00015 22.6 3.8 46 7-52 18-65 (80)
236 KOG1127 TPR repeat-containing 76.1 21 0.00045 30.9 7.7 55 81-138 595-651 (1238)
237 PF11491 DUF3213: Protein of u 76.0 0.66 1.4E-05 26.9 -0.5 30 46-75 10-39 (88)
238 PF13762 MNE1: Mitochondrial s 75.8 19 0.00042 23.4 10.4 100 22-133 29-131 (145)
239 KOG1130 Predicted G-alpha GTPa 75.7 2.2 4.7E-05 32.9 2.0 48 5-52 27-77 (639)
240 PF13512 TPR_18: Tetratricopep 75.7 19 0.00041 23.4 7.5 47 5-52 20-69 (142)
241 PF11663 Toxin_YhaV: Toxin wit 75.1 3.9 8.4E-05 26.3 2.8 34 92-127 105-138 (140)
242 KOG0550 Molecular chaperone (D 75.0 37 0.0008 26.4 8.7 120 8-129 216-369 (486)
243 PLN02789 farnesyltranstransfer 74.7 32 0.0007 25.5 12.9 122 5-129 47-188 (320)
244 PF07079 DUF1347: Protein of u 74.0 14 0.00031 28.9 5.9 73 81-153 76-180 (549)
245 PF13181 TPR_8: Tetratricopept 73.1 7.6 0.00017 17.6 4.3 27 84-110 3-29 (34)
246 PRK15331 chaperone protein Sic 73.0 17 0.00037 24.2 5.5 46 5-52 47-93 (165)
247 KOG1538 Uncharacterized conser 72.8 21 0.00045 29.5 6.7 16 65-80 708-723 (1081)
248 cd07153 Fur_like Ferric uptake 72.6 7.4 0.00016 23.8 3.6 46 2-47 7-52 (116)
249 COG3629 DnrI DNA-binding trans 71.7 18 0.0004 26.3 5.8 57 81-138 152-208 (280)
250 PF14853 Fis1_TPR_C: Fis1 C-te 71.7 12 0.00027 19.7 3.8 33 4-38 10-42 (53)
251 PF04097 Nic96: Nup93/Nic96; 70.7 45 0.00097 27.2 8.4 63 88-152 264-336 (613)
252 COG5107 RNA14 Pre-mRNA 3'-end 70.6 43 0.00092 26.5 7.7 107 30-138 397-523 (660)
253 COG4455 ImpE Protein of avirul 70.3 19 0.00042 25.5 5.4 67 2-69 8-81 (273)
254 smart00804 TAP_C C-terminal do 68.6 5.8 0.00013 21.8 2.2 25 94-118 37-62 (63)
255 PF01475 FUR: Ferric uptake re 68.3 7.8 0.00017 24.0 3.1 51 86-136 11-61 (120)
256 KOG4162 Predicted calmodulin-b 67.8 53 0.0011 27.5 8.0 102 6-109 238-350 (799)
257 KOG1128 Uncharacterized conser 67.8 15 0.00031 30.4 5.0 76 61-138 399-478 (777)
258 PF07163 Pex26: Pex26 protein; 66.9 13 0.00028 27.2 4.2 69 35-105 88-181 (309)
259 PF13281 DUF4071: Domain of un 66.4 56 0.0012 25.0 12.4 105 8-112 195-335 (374)
260 COG4455 ImpE Protein of avirul 66.3 39 0.00085 24.0 6.2 46 81-126 34-81 (273)
261 PF13934 ELYS: Nuclear pore co 66.3 33 0.00071 24.1 6.1 28 36-63 114-141 (226)
262 PF11817 Foie-gras_1: Foie gra 66.3 13 0.00028 26.3 4.2 48 4-51 187-239 (247)
263 KOG4340 Uncharacterized conser 66.1 53 0.0012 24.6 10.3 104 4-108 187-336 (459)
264 smart00028 TPR Tetratricopepti 65.9 9.5 0.00021 15.9 3.1 28 83-110 2-29 (34)
265 COG2405 Predicted nucleic acid 65.4 18 0.0004 23.5 4.2 41 87-127 114-154 (157)
266 KOG4648 Uncharacterized conser 65.1 9.9 0.00022 28.7 3.4 50 90-141 105-155 (536)
267 PF02607 B12-binding_2: B12 bi 64.6 15 0.00033 20.6 3.6 44 92-135 11-54 (79)
268 PF11207 DUF2989: Protein of u 64.4 23 0.0005 24.5 4.9 50 3-52 148-200 (203)
269 KOG0495 HAT repeat protein [RN 64.4 84 0.0018 26.2 11.1 125 8-135 664-805 (913)
270 PRK11639 zinc uptake transcrip 64.2 16 0.00034 24.4 4.0 50 87-136 30-79 (169)
271 COG3118 Thioredoxin domain-con 64.0 46 0.001 24.5 6.5 107 4-111 143-265 (304)
272 PF10363 DUF2435: Protein of u 63.6 29 0.00062 20.6 5.0 50 96-152 39-88 (92)
273 COG0735 Fur Fe2+/Zn2+ uptake r 62.4 21 0.00046 23.1 4.3 51 86-136 24-74 (145)
274 KOG4648 Uncharacterized conser 62.2 15 0.00032 27.9 3.9 70 39-108 106-184 (536)
275 KOG2047 mRNA splicing factor [ 61.9 93 0.002 25.9 10.9 21 118-138 249-269 (835)
276 PF10475 DUF2450: Protein of u 61.3 61 0.0013 23.6 7.1 26 81-106 196-221 (291)
277 PF01475 FUR: Ferric uptake re 61.3 9.4 0.0002 23.6 2.5 46 2-47 14-59 (120)
278 PF05944 Phage_term_smal: Phag 60.9 41 0.0009 21.5 5.6 56 53-114 25-80 (132)
279 KOG1586 Protein required for f 60.8 60 0.0013 23.4 8.0 73 62-138 76-148 (288)
280 cd00280 TRFH Telomeric Repeat 60.6 15 0.00033 25.1 3.4 20 4-23 120-139 (200)
281 KOG1156 N-terminal acetyltrans 60.2 98 0.0021 25.6 9.9 132 6-138 52-206 (700)
282 PF02607 B12-binding_2: B12 bi 59.4 9.6 0.00021 21.5 2.1 41 5-45 11-51 (79)
283 KOG1125 TPR repeat-containing 58.6 67 0.0015 25.9 7.0 55 5-60 440-497 (579)
284 KOG2297 Predicted translation 57.4 26 0.00056 26.2 4.3 112 10-129 270-383 (412)
285 COG1729 Uncharacterized protei 56.7 73 0.0016 23.1 8.9 86 5-111 151-244 (262)
286 COG1729 Uncharacterized protei 56.6 61 0.0013 23.4 6.1 60 88-150 184-245 (262)
287 COG0735 Fur Fe2+/Zn2+ uptake r 56.5 20 0.00043 23.2 3.4 63 17-80 8-75 (145)
288 KOG4567 GTPase-activating prot 56.4 53 0.0011 24.6 5.7 81 15-107 263-343 (370)
289 PF11846 DUF3366: Domain of un 55.7 33 0.00072 23.1 4.6 24 57-80 141-164 (193)
290 PF11846 DUF3366: Domain of un 55.5 34 0.00073 23.1 4.6 45 94-138 120-165 (193)
291 PRK11639 zinc uptake transcrip 55.0 17 0.00036 24.2 2.9 58 21-79 17-79 (169)
292 KOG2610 Uncharacterized conser 55.0 94 0.002 23.8 7.7 105 4-109 146-274 (491)
293 PF14840 DNA_pol3_delt_C: Proc 54.3 15 0.00033 23.1 2.6 27 8-34 10-36 (125)
294 KOG1920 IkappaB kinase complex 54.3 1.4E+02 0.003 26.7 8.5 128 6-138 862-1020(1265)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 53.9 49 0.0011 20.2 5.9 29 81-109 41-69 (103)
296 COG3947 Response regulator con 53.2 40 0.00086 25.0 4.7 41 4-45 288-328 (361)
297 TIGR01529 argR_whole arginine 53.0 35 0.00076 22.2 4.1 42 87-128 5-46 (146)
298 KOG4162 Predicted calmodulin-b 52.8 1.4E+02 0.0031 25.2 9.5 104 5-109 660-781 (799)
299 KOG2041 WD40 repeat protein [G 52.2 58 0.0013 27.4 5.9 16 9-24 748-763 (1189)
300 PRK10153 DNA-binding transcrip 52.0 1.2E+02 0.0027 24.2 9.9 38 81-120 452-489 (517)
301 PF08631 SPO22: Meiosis protei 52.0 88 0.0019 22.5 10.9 121 6-127 4-165 (278)
302 KOG0991 Replication factor C, 50.9 28 0.0006 25.1 3.6 47 4-52 247-293 (333)
303 PF09613 HrpB1_HrpK: Bacterial 50.6 30 0.00064 23.0 3.5 42 83-128 47-88 (160)
304 PF11817 Foie-gras_1: Foie gra 50.5 55 0.0012 23.2 5.2 55 83-137 179-238 (247)
305 PF07035 Mic1: Colon cancer-as 50.2 75 0.0016 21.3 7.3 105 2-112 36-150 (167)
306 PF07443 HARP: HepA-related pr 49.0 6.4 0.00014 21.1 0.2 32 9-40 6-37 (55)
307 PF09868 DUF2095: Uncharacteri 48.7 20 0.00043 22.4 2.3 25 1-25 67-91 (128)
308 PF02184 HAT: HAT (Half-A-TPR) 48.2 29 0.00063 16.3 2.3 24 10-35 2-25 (32)
309 COG5108 RPO41 Mitochondrial DN 48.0 53 0.0011 27.4 5.0 48 1-48 34-83 (1117)
310 KOG0037 Ca2+-binding protein, 47.8 84 0.0018 22.1 5.4 78 27-109 90-203 (221)
311 KOG0543 FKBP-type peptidyl-pro 47.5 1.1E+02 0.0023 23.7 6.3 38 90-129 299-336 (397)
312 PRK09462 fur ferric uptake reg 47.4 55 0.0012 21.1 4.4 50 87-136 21-71 (148)
313 KOG0553 TPR repeat-containing 47.3 37 0.00081 25.0 3.9 56 81-138 114-170 (304)
314 PF09477 Type_III_YscG: Bacter 47.1 69 0.0015 19.9 7.8 87 9-121 20-107 (116)
315 PF12926 MOZART2: Mitotic-spin 46.9 43 0.00094 19.8 3.4 27 15-41 28-54 (88)
316 TIGR01529 argR_whole arginine 46.6 35 0.00077 22.2 3.4 41 2-42 7-47 (146)
317 COG5159 RPN6 26S proteasome re 46.4 1.2E+02 0.0027 22.6 8.8 105 4-108 12-151 (421)
318 cd00280 TRFH Telomeric Repeat 46.3 96 0.0021 21.4 7.2 65 11-75 85-158 (200)
319 PRK10866 outer membrane biogen 45.6 1.1E+02 0.0023 21.7 10.4 22 3-24 77-98 (243)
320 COG4003 Uncharacterized protei 45.1 26 0.00057 20.5 2.3 28 2-29 38-66 (98)
321 PF14840 DNA_pol3_delt_C: Proc 45.0 22 0.00048 22.4 2.2 28 93-120 8-35 (125)
322 PF13762 MNE1: Mitochondrial s 44.9 87 0.0019 20.5 8.4 72 81-152 38-127 (145)
323 PRK09462 fur ferric uptake reg 44.4 42 0.00092 21.6 3.6 34 11-44 33-66 (148)
324 KOG0548 Molecular co-chaperone 44.4 1.7E+02 0.0036 23.6 10.0 46 5-51 368-413 (539)
325 COG3947 Response regulator con 44.2 1.3E+02 0.0029 22.4 8.4 84 25-108 222-339 (361)
326 PF07218 RAP1: Rhoptry-associa 44.0 1.2E+02 0.0027 24.6 6.4 63 49-129 599-661 (782)
327 PF08461 HTH_12: Ribonuclease 43.7 41 0.0009 18.5 3.0 43 2-44 4-46 (66)
328 KOG1914 mRNA cleavage and poly 42.7 60 0.0013 26.2 4.6 57 81-138 365-422 (656)
329 KOG1941 Acetylcholine receptor 42.3 1.6E+02 0.0035 22.8 6.6 80 59-138 161-267 (518)
330 COG3898 Uncharacterized membra 41.3 1.7E+02 0.0038 22.9 8.5 35 82-116 188-223 (531)
331 smart00386 HAT HAT (Half-A-TPR 40.2 36 0.00077 14.6 3.7 28 9-37 1-28 (33)
332 COG4649 Uncharacterized protei 39.2 1.3E+02 0.0028 20.8 10.1 111 5-115 68-200 (221)
333 PF05664 DUF810: Protein of un 39.2 2.3E+02 0.005 23.7 8.1 30 23-52 210-243 (677)
334 KOG2114 Vacuolar assembly/sort 39.1 71 0.0015 27.2 4.6 66 66-138 419-484 (933)
335 COG5108 RPO41 Mitochondrial DN 39.1 1.1E+02 0.0024 25.7 5.6 65 65-129 33-115 (1117)
336 PF11768 DUF3312: Protein of u 38.3 98 0.0021 25.0 5.1 44 1-44 414-458 (545)
337 KOG0292 Vesicle coat complex C 38.2 2.8E+02 0.006 24.3 8.9 64 67-130 1069-1132(1202)
338 KOG1941 Acetylcholine receptor 37.2 1.8E+02 0.0039 22.6 6.1 105 4-108 131-272 (518)
339 PF06957 COPI_C: Coatomer (COP 36.7 2.1E+02 0.0045 22.4 8.6 122 5-129 214-348 (422)
340 TIGR02531 yecD_yerC TrpR-relat 36.3 86 0.0019 18.5 3.7 27 83-109 3-29 (88)
341 PF13170 DUF4003: Protein of u 35.6 1.8E+02 0.0039 21.4 9.0 30 98-127 78-107 (297)
342 COG4235 Cytochrome c biogenesi 35.6 1.8E+02 0.0039 21.4 7.5 21 60-80 156-176 (287)
343 KOG0991 Replication factor C, 35.0 73 0.0016 23.1 3.7 48 81-130 238-285 (333)
344 KOG2041 WD40 repeat protein [G 34.8 66 0.0014 27.1 3.8 64 46-109 838-905 (1189)
345 KOG0687 26S proteasome regulat 34.4 2.1E+02 0.0045 21.8 6.9 50 3-52 112-170 (393)
346 COG4235 Cytochrome c biogenesi 34.3 1.9E+02 0.0041 21.3 9.2 97 27-125 153-268 (287)
347 PF07864 DUF1651: Protein of u 34.2 39 0.00084 19.1 1.9 20 10-29 51-70 (75)
348 PF13934 ELYS: Nuclear pore co 34.0 1.7E+02 0.0036 20.6 7.1 20 88-107 114-133 (226)
349 COG2976 Uncharacterized protei 34.0 1.6E+02 0.0035 20.5 6.0 70 67-138 96-180 (207)
350 COG4700 Uncharacterized protei 33.9 1.7E+02 0.0036 20.5 9.9 81 56-138 85-181 (251)
351 PLN02789 farnesyltranstransfer 33.2 2E+02 0.0044 21.3 12.9 85 10-95 87-189 (320)
352 KOG0276 Vesicle coat complex C 32.7 1.9E+02 0.0042 24.0 6.0 71 62-138 668-742 (794)
353 COG3294 HD supefamily hydrolas 32.6 39 0.00084 24.0 2.0 21 99-119 67-87 (269)
354 PHA02875 ankyrin repeat protei 32.4 65 0.0014 24.4 3.5 51 5-59 9-62 (413)
355 TIGR03184 DNA_S_dndE DNA sulfu 32.4 1.2E+02 0.0027 18.5 5.0 52 12-63 5-59 (105)
356 KOG2066 Vacuolar assembly/sort 32.0 2.7E+02 0.0059 23.8 6.8 23 87-109 510-532 (846)
357 COG4150 CysP ABC-type sulfate 31.4 15 0.00033 26.4 -0.1 72 41-113 70-150 (341)
358 PF04184 ST7: ST7 protein; In 30.8 1.3E+02 0.0029 24.1 4.8 51 88-138 265-316 (539)
359 PF02259 FAT: FAT domain; Int 30.8 2.1E+02 0.0046 20.8 8.9 58 81-138 145-205 (352)
360 TIGR02328 conserved hypothetic 30.8 52 0.0011 20.5 2.1 17 102-118 55-71 (120)
361 PF08967 DUF1884: Domain of un 30.7 60 0.0013 18.9 2.3 22 99-120 12-33 (85)
362 PF02284 COX5A: Cytochrome c o 30.7 1.3E+02 0.0029 18.5 7.1 44 81-125 44-87 (108)
363 PF07875 Coat_F: Coat F domain 30.3 63 0.0014 17.4 2.3 19 11-29 44-62 (64)
364 KOG0624 dsRNA-activated protei 30.1 2.6E+02 0.0056 21.6 9.8 77 4-80 115-209 (504)
365 PF04124 Dor1: Dor1-like famil 30.0 96 0.0021 23.2 3.9 26 84-109 108-133 (338)
366 COG3898 Uncharacterized membra 30.0 2.8E+02 0.006 21.9 8.1 108 3-115 271-396 (531)
367 COG5159 RPN6 26S proteasome re 29.6 2.4E+02 0.0053 21.1 6.0 49 90-138 11-66 (421)
368 cd08791 DED_DEDD2 Death Effect 29.6 90 0.0019 19.1 3.0 53 10-63 48-104 (106)
369 KOG3364 Membrane protein invol 29.6 69 0.0015 20.9 2.6 73 27-105 29-111 (149)
370 COG2231 Uncharacterized protei 29.5 1.8E+02 0.004 20.3 4.8 41 23-63 138-180 (215)
371 PF12796 Ank_2: Ankyrin repeat 29.5 56 0.0012 18.4 2.2 52 4-61 3-55 (89)
372 cd00045 DED The Death Effector 29.4 93 0.002 17.7 3.0 37 10-48 35-72 (77)
373 TIGR02508 type_III_yscG type I 29.2 1.4E+02 0.0031 18.4 8.5 86 10-121 20-106 (115)
374 COG4700 Uncharacterized protei 29.0 2.1E+02 0.0045 20.1 10.9 50 3-52 97-146 (251)
375 COG1110 Reverse gyrase [DNA re 28.8 1.2E+02 0.0027 26.7 4.6 47 103-151 1091-1147(1187)
376 cd08780 Death_TRADD Death Doma 28.6 1.3E+02 0.0029 17.9 3.5 36 6-44 43-79 (90)
377 PF04124 Dor1: Dor1-like famil 28.5 48 0.001 24.8 2.1 34 1-34 112-146 (338)
378 KOG0550 Molecular chaperone (D 28.4 2.3E+02 0.0049 22.3 5.5 49 90-138 257-308 (486)
379 KOG0376 Serine-threonine phosp 28.4 1.7E+02 0.0037 23.2 5.0 101 4-127 13-115 (476)
380 smart00668 CTLH C-terminal to 28.3 88 0.0019 16.0 2.7 24 88-111 7-30 (58)
381 PF03943 TAP_C: TAP C-terminal 28.2 29 0.00063 18.1 0.7 20 10-29 28-48 (51)
382 PF09435 DUF2015: Fungal prote 28.2 81 0.0018 20.1 2.7 25 93-117 96-122 (128)
383 cd08044 TAF5_NTD2 TAF5_NTD2 is 28.1 1.6E+02 0.0035 18.6 5.9 17 7-23 43-59 (133)
384 cd08304 DD_superfamily The Dea 27.4 1E+02 0.0022 17.1 2.8 28 14-45 35-62 (69)
385 KOG3807 Predicted membrane pro 27.2 90 0.0019 23.8 3.2 47 6-52 286-333 (556)
386 PF09797 NatB_MDM20: N-acetylt 27.1 1.8E+02 0.0039 21.9 4.9 35 87-121 222-256 (365)
387 PRK12356 glutaminase; Reviewed 26.8 86 0.0019 23.4 3.1 69 53-121 91-162 (319)
388 COG1466 HolA DNA polymerase II 26.7 2.7E+02 0.0059 20.7 8.3 25 91-115 217-241 (334)
389 PF04097 Nic96: Nup93/Nic96; 26.5 1.8E+02 0.0039 23.9 5.1 66 65-131 85-159 (613)
390 cd08320 Pyrin_NALPs Pyrin deat 26.4 62 0.0013 18.9 1.9 24 85-108 48-71 (86)
391 PF09384 UTP15_C: UTP15 C term 26.3 1.9E+02 0.0041 18.8 6.2 59 93-151 43-108 (148)
392 PRK13342 recombination factor 26.2 3.1E+02 0.0066 21.1 11.3 118 11-132 153-280 (413)
393 PRK13341 recombination factor 26.0 4.1E+02 0.0088 22.5 12.0 114 12-132 171-308 (725)
394 PF02847 MA3: MA3 domain; Int 25.6 1.6E+02 0.0034 17.6 5.0 21 2-22 9-29 (113)
395 TIGR02710 CRISPR-associated pr 25.3 1.6E+02 0.0035 22.6 4.4 41 88-128 136-176 (380)
396 PF00531 Death: Death domain; 25.0 72 0.0016 17.8 2.1 21 30-50 57-77 (83)
397 PF05053 Menin: Menin; InterP 24.8 2.3E+02 0.005 23.2 5.1 45 63-109 321-365 (618)
398 COG4167 SapF ABC-type antimicr 24.2 1.4E+02 0.003 20.8 3.5 42 11-52 123-164 (267)
399 KOG4555 TPR repeat-containing 24.1 2.2E+02 0.0047 18.7 6.3 13 40-52 53-65 (175)
400 PRK10292 hypothetical protein; 24.1 1.4E+02 0.0031 16.5 5.8 33 106-138 23-55 (69)
401 PF12554 MOZART1: Mitotic-spin 23.8 1.2E+02 0.0026 15.7 2.9 29 89-117 11-39 (48)
402 smart00535 RIBOc Ribonuclease 23.5 1.9E+02 0.004 17.7 4.0 30 81-110 94-123 (129)
403 PF01316 Arg_repressor: Argini 23.5 1.5E+02 0.0033 16.6 3.9 42 87-128 8-49 (70)
404 PF12169 DNA_pol3_gamma3: DNA 23.2 1.1E+02 0.0024 19.2 2.9 34 84-118 17-50 (143)
405 cd08321 Pyrin_ASC-like Pyrin D 23.1 93 0.002 18.0 2.2 34 76-109 39-72 (82)
406 PRK13713 conjugal transfer pro 23.0 1.1E+02 0.0025 19.1 2.6 35 99-133 7-41 (118)
407 PF09397 Ftsk_gamma: Ftsk gamm 22.8 1E+02 0.0023 17.0 2.3 18 11-28 34-51 (65)
408 smart00540 LEM in nuclear memb 22.7 53 0.0012 16.6 1.0 19 15-33 9-27 (44)
409 PF00317 Ribonuc_red_lgN: Ribo 22.5 66 0.0014 18.4 1.6 27 8-34 50-76 (83)
410 KOG1130 Predicted G-alpha GTPa 22.5 83 0.0018 24.7 2.4 57 82-138 15-76 (639)
411 cd04934 ACT_AK-Hom3_1 CT domai 22.3 69 0.0015 17.9 1.5 29 4-32 8-36 (73)
412 PF12968 DUF3856: Domain of Un 22.3 2.3E+02 0.0049 18.2 5.7 79 29-118 54-141 (144)
413 smart00005 DEATH DEATH domain, 22.2 1.6E+02 0.0036 16.6 3.6 39 97-137 45-83 (88)
414 KOG4077 Cytochrome c oxidase, 22.1 2.3E+02 0.005 18.3 4.7 43 81-124 83-125 (149)
415 KOG2063 Vacuolar assembly/sort 22.0 3.7E+02 0.008 23.4 6.1 119 1-129 510-638 (877)
416 KOG0403 Neoplastic transformat 22.0 3.1E+02 0.0068 22.0 5.3 46 65-110 514-571 (645)
417 smart00544 MA3 Domain in DAP-5 21.9 1.9E+02 0.0042 17.3 8.6 22 2-23 9-30 (113)
418 TIGR01503 MthylAspMut_E methyl 21.9 33 0.00071 26.9 0.2 46 90-138 62-107 (480)
419 PF14744 WASH-7_mid: WASH comp 21.7 1.5E+02 0.0033 22.5 3.5 30 98-127 282-311 (350)
420 PF14162 YozD: YozD-like prote 21.7 1.4E+02 0.0031 15.7 2.6 20 99-118 12-31 (57)
421 PF09373 PMBR: Pseudomurein-bi 21.7 73 0.0016 14.8 1.3 21 12-32 12-32 (33)
422 PF01371 Trp_repressor: Trp re 21.5 81 0.0017 18.6 1.7 26 84-109 2-27 (87)
423 PHA01754 hypothetical protein 21.5 1.2E+02 0.0025 16.6 2.2 18 99-116 47-64 (69)
424 COG2178 Predicted RNA-binding 21.5 2.9E+02 0.0063 19.2 7.7 18 93-110 132-149 (204)
425 cd08790 DED_DEDD Death Effecto 21.4 1.6E+02 0.0035 17.8 3.0 45 7-52 36-80 (97)
426 smart00031 DED Death effector 21.3 1.7E+02 0.0038 16.6 3.2 37 11-49 37-74 (79)
427 PF14044 NETI: NETI protein 21.2 91 0.002 16.8 1.7 17 101-117 10-26 (57)
428 cd00215 PTS_IIA_lac PTS_IIA, P 21.0 1E+02 0.0023 18.5 2.2 19 92-110 25-43 (97)
429 PF00244 14-3-3: 14-3-3 protei 20.9 2.8E+02 0.006 19.6 4.6 40 88-127 7-46 (236)
430 PF10963 DUF2765: Protein of u 20.7 1.6E+02 0.0035 17.2 2.8 27 26-52 12-38 (83)
431 PF05261 Tra_M: TraM protein, 20.5 60 0.0013 20.6 1.1 43 3-45 5-47 (127)
432 PF09082 DUF1922: Domain of un 20.3 47 0.001 18.6 0.5 20 92-111 37-56 (68)
433 PRK15180 Vi polysaccharide bio 20.1 2.8E+02 0.0061 22.5 4.8 101 8-110 302-419 (831)
434 PF07163 Pex26: Pex26 protein; 20.0 3.8E+02 0.0082 19.9 5.8 77 2-80 90-178 (309)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=217.85 Aligned_cols=153 Identities=27% Similarity=0.384 Sum_probs=146.8
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++ +.|+.||..+||+||.+|+++|+
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCC
Confidence 5889999999999999999999999999999999999999999999999998 88899999999999999999999
Q ss_pred ccccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--------
Q 039275 76 IRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------- 138 (153)
Q Consensus 76 ~~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------- 138 (153)
+++|. |..+||+||.+|++.|+.++|.++|++|++.|++||..||+.+|++|++.|++++|.+
T Consensus 376 ~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~ 455 (697)
T PLN03081 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN 455 (697)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 99998 8999999999999999999999999999999999999999999999999999999988
Q ss_pred -----HHHHHHHHHHHhhcC
Q 039275 139 -----NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 -----~~~~~~~li~~y~k~ 153 (153)
+..+|+.||++|+|+
T Consensus 456 ~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 456 HRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred cCCCCCccchHhHHHHHHhc
Confidence 567899999998874
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=4.4e-31 Score=213.75 Aligned_cols=153 Identities=21% Similarity=0.347 Sum_probs=127.1
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----h--hhhhcchhhHHHHHHHHHhc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----Q--IELDLSSYSLSSKTSRYAHS 73 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~--~~~~~~~~~~~~ll~~~~~~ 73 (153)
||++|++.|++++|.++|++|++.|+.||..||+++|.+|++.|++++|.++ . .++.||..+|++||.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 4678888888888888888888888888888888888888888888888877 1 35678888888888888888
Q ss_pred CCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--
Q 039275 74 GRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-- 138 (153)
Q Consensus 74 g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-- 138 (153)
|++++|. +..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++.|++++|.+
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8888877 6688888888888888888888888888888888888888888888888888888887
Q ss_pred ----------HHHHHHHHHHHhhcC
Q 039275 139 ----------NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 ----------~~~~~~~li~~y~k~ 153 (153)
+..+|++||++|+|+
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 777888888888764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=7.6e-31 Score=207.44 Aligned_cols=153 Identities=27% Similarity=0.433 Sum_probs=146.0
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
||++|++.|++++|.++|++|++.|+.||..||++++.+|++.|..+.+.++ +.|+.||..+||+||.+|+++|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 5789999999999999999999999999999999999999999999999988 78899999999999999999999
Q ss_pred ccccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--------
Q 039275 76 IRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------- 138 (153)
Q Consensus 76 ~~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------- 138 (153)
+++|. |..+||+||.+|++.|++++|.++|++|++.|++||..||+.++++|++.|++++|.+
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99998 8999999999999999999999999999999999999999999999999999999988
Q ss_pred ----HHHHHHHHHHHhhcC
Q 039275 139 ----NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 ----~~~~~~~li~~y~k~ 153 (153)
+..+||+||++|+|+
T Consensus 355 g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKW 373 (697)
T ss_pred CCCCCeeehHHHHHHHHHC
Confidence 778888899888875
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=8.3e-31 Score=211.10 Aligned_cols=153 Identities=35% Similarity=0.477 Sum_probs=148.1
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
||++|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.+.++ +.|+.||..+||+||.+|++.|+
T Consensus 259 li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 338 (857)
T PLN03077 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999999999999999999999 88899999999999999999999
Q ss_pred ccccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--------
Q 039275 76 IRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------- 138 (153)
Q Consensus 76 ~~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------- 138 (153)
+++|. |..+||+||.+|++.|++++|.++|++|++.|++||..||+.+|.+|++.|+++.|.+
T Consensus 339 ~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 339 WGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred HHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 99999 8899999999999999999999999999999999999999999999999999999998
Q ss_pred ----HHHHHHHHHHHhhcC
Q 039275 139 ----NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 ----~~~~~~~li~~y~k~ 153 (153)
+..+||+||++|+|+
T Consensus 419 g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 419 GLISYVVVANALIEMYSKC 437 (857)
T ss_pred CCCcchHHHHHHHHHHHHc
Confidence 788999999999985
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=3.8e-30 Score=208.36 Aligned_cols=152 Identities=16% Similarity=0.259 Sum_probs=95.6
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
||++|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++ +.|+.||..+|++||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 3556666666666666666666666666666666666666666666666666 44455666666666666666666
Q ss_pred ccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChhhHHHHHHHhcCCCccccchh--
Q 039275 76 IRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLES--LGVHTDEVTMVVVLAASSGPGALDFGKS-- 138 (153)
Q Consensus 76 ~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~a~~-- 138 (153)
+++|. |..+||+||.+|++.|++++|.++|++|+. .|+.||..||+++|++|++.|++++|.+
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 66665 556666666666666666666666666654 3566666666666666666666666655
Q ss_pred ----------HHHHHHHHHHHhhc
Q 039275 139 ----------NIFLTTAIIEMYAK 152 (153)
Q Consensus 139 ----------~~~~~~~li~~y~k 152 (153)
+..+||+||++|++
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHh
Confidence 44556666666554
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=3.6e-30 Score=207.47 Aligned_cols=153 Identities=29% Similarity=0.472 Sum_probs=147.1
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
||++|++.|++++|+++|++|++.|+.||..||+++|.+|++.++++.+.++ +.|+.||..++|+||.+|++.|+
T Consensus 158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 5789999999999999999999999999999999999999999999988888 78899999999999999999999
Q ss_pred ccccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--------
Q 039275 76 IRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------- 138 (153)
Q Consensus 76 ~~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------- 138 (153)
+++|. |..+||+||.+|++.|++++|.++|.+|++.|++||..||+.+|.+|++.|+.+.|.+
T Consensus 238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99998 8999999999999999999999999999999999999999999999999999999988
Q ss_pred ----HHHHHHHHHHHhhcC
Q 039275 139 ----NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 ----~~~~~~~li~~y~k~ 153 (153)
|..+||+||++|+|+
T Consensus 318 g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred CCccchHHHHHHHHHHHhc
Confidence 899999999999875
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.71 E-value=3.4e-17 Score=87.53 Aligned_cols=49 Identities=33% Similarity=0.615 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
|..+||++|.+|++.|++++|.++|++|++.|++||..||+.+|++||+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.45 E-value=1.7e-13 Score=73.13 Aligned_cols=42 Identities=33% Similarity=0.654 Sum_probs=33.1
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG 42 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 42 (153)
||++|++.|++++|.++|++|.+.|++||..||+++|++|++
T Consensus 9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 467788888888888888888888888888888888887764
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.12 E-value=1.2e-09 Score=81.36 Aligned_cols=53 Identities=9% Similarity=0.061 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++.+...|++.|++++|.+.++++.+. .|+...+..+...+.+.|++++|..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 3445555555555555555555555443 2444444555555555555555555
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.09 E-value=4.4e-09 Score=78.34 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=96.8
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhh---hhcc------hhhHHHHHHHHHh
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE---LDLS------SYSLSSKTSRYAH 72 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~------~~~~~~ll~~~~~ 72 (153)
...|.+.|++++|.+.|+++.+. -+++..++..+...+.+.|++++|.+.... ..|+ ...+..+...+.+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 192 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA 192 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh
Confidence 34677888888888888888764 345677888888888888888888877111 1111 1234456667778
Q ss_pred cCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 73 SGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 73 ~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.|++++|. +...+..+...+.+.|++++|.++|+++...+......++..+..++++.|++++|.+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888777 4556667778888888888888888888765422334567788888888888888877
No 11
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=99.08 E-value=2.3e-10 Score=55.91 Aligned_cols=35 Identities=37% Similarity=0.623 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
.+||+||.+|++.|++++|.++|++|++.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 12
>PF12854 PPR_1: PPR repeat
Probab=98.97 E-value=7.9e-10 Score=53.84 Aligned_cols=29 Identities=41% Similarity=0.800 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
|..+||+||.+||+.|++++|.++|++|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 56889999999999999999999999985
No 13
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.97 E-value=1.3e-09 Score=52.95 Aligned_cols=33 Identities=24% Similarity=0.453 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999999998
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=2.2e-08 Score=74.28 Aligned_cols=131 Identities=13% Similarity=0.187 Sum_probs=86.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHH--hcCCCc--hHHHHHH-----------------------hhhhh
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA--SSGPGA--WILAKEL-----------------------QIELD 57 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~--~~~a~~~-----------------------~~~~~ 57 (153)
....|+++++.-+|+.|++.|+..+...--.++.. |....+ +.+-+.+ ....+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 34578899999999999999887776555555431 222221 1111111 23345
Q ss_pred cchhhHHHHHHHHHhcCCccccc--------------------------------------------hHHHHHHHHHHHH
Q 039275 58 LSSYSLSSKTSRYAHSGRIRLAR--------------------------------------------DPVSCKAMISGYS 93 (153)
Q Consensus 58 ~~~~~~~~ll~~~~~~g~~~~a~--------------------------------------------~~~~~~~li~~~~ 93 (153)
.+..++.+||.+.|+....+.|. |..|+|++++...
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 56778888888888888888777 6777777777777
Q ss_pred hcCChHHH----HHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 94 QAGRFNEA----LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 94 ~~g~~~~a----~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
+.|+++.| .+++.+|++-|+.|+-.+|..+|.-+++-++..+
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 77766543 4566677777777777777777776666666554
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=1.4e-08 Score=75.19 Aligned_cols=127 Identities=15% Similarity=0.111 Sum_probs=102.3
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHH-HHHHhhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL-AKELQIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
||.+.|+--..++|.+++.+-+....+.+..+||.+|.+-+=...-+. ++-+.-.+.||..|+|+++++..+.|+++.|
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~a 292 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDA 292 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHH
Confidence 578889999999999999999999999999999999986543332222 3333777899999999999999999999998
Q ss_pred c-----------------hHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc----CCCCChhhHHHHHHHh
Q 039275 80 R-----------------DPVSCKAMISGYSQAGRFNE-ALEPFGKLESL----GVHTDEVTMVVVLAAS 127 (153)
Q Consensus 80 ~-----------------~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~----g~~p~~~t~~~li~~~ 127 (153)
+ ...+|..+|.-+++.+++.+ +..+..+++.. -++|-..+-+-++..-
T Consensus 293 r~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 293 RKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 8 78899999999999999855 55556666543 4888888888776543
No 16
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.86 E-value=9.6e-08 Score=77.13 Aligned_cols=134 Identities=13% Similarity=-0.001 Sum_probs=75.6
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|.++++++.+. .+.+...|..+...+.+.|++++|.+. .. .. +.+...+..+...+.+.|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 3456666677777777666543 344566666667777777777777666 11 11 2234455566666666666666
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +..+|..+...+...|++++|.++++.+.... .++...+..+...+.+.|++++|.+
T Consensus 654 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 724 (899)
T TIGR02917 654 AITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQ 724 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHH
Confidence 65 44555555555555555555555555555443 2233444444455555555555544
No 17
>PF12854 PPR_1: PPR repeat
Probab=98.83 E-value=4.5e-09 Score=51.15 Aligned_cols=31 Identities=26% Similarity=0.118 Sum_probs=26.6
Q ss_pred cCCCccHHHHHHHHHHhcCCCchHHHHHHhh
Q 039275 24 LGVHTDEVTMVVVLTASSGPGAWILAKELQI 54 (153)
Q Consensus 24 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 54 (153)
.|++||..||+++|+++++.|++++|.++..
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4788999999999999999999999988743
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.82 E-value=1.6e-07 Score=75.92 Aligned_cols=133 Identities=13% Similarity=0.088 Sum_probs=87.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+. +.. .+.+...+..+...+.+.|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45677788888888888776542 34556667777777778888887777 111 22335566677777777777777
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+
T Consensus 688 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 688 AKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 66 45556666666677777777777777766543 444556666666666666666655
No 19
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.80 E-value=6.5e-09 Score=49.29 Aligned_cols=31 Identities=42% Similarity=0.834 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGV 113 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 113 (153)
++||+||.+|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999999875
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.73 E-value=6.1e-08 Score=77.09 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----------------------------hhhhhcchhhHHHHH
Q 039275 16 EPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----------------------------QIELDLSSYSLSSKT 67 (153)
Q Consensus 16 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----------------------------~~~~~~~~~~~~~ll 67 (153)
+++-.+...|+.|+.+||.++|..||..|+.+.|--+ ++.-.|...+|+.|+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll 90 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLL 90 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHH
Confidence 5677888999999999999999999999998887722 122246778999999
Q ss_pred HHHHhcCCccccc-------------------------------------------------------------------
Q 039275 68 SRYAHSGRIRLAR------------------------------------------------------------------- 80 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------------------------------------------------------- 80 (153)
++|.+.||+..-.
T Consensus 91 ~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~ 170 (1088)
T KOG4318|consen 91 KAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAW 170 (1088)
T ss_pred HHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 9999999976533
Q ss_pred --------------------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 039275 81 --------------------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAA 126 (153)
Q Consensus 81 --------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 126 (153)
++.+|.+++.....+|+++.|..++.+|++.|+..+.+=|..++-+
T Consensus 171 ~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 171 NAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 8899999999999999999999999999999988888888888766
No 21
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.48 E-value=1.6e-07 Score=45.47 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=28.2
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccH
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDE 30 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 30 (153)
||++|++.|++++|.++|++|++.|++||.
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 588999999999999999999999999984
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.46 E-value=8.2e-06 Score=55.70 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=91.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ..- .+.+...+..+...+...|++++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHH
Confidence 35677888888888888876542 33456667777788888888888877 111 12334556666777778888877
Q ss_pred cc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. ....+..+-..+...|++++|.+.|.+..... ..+...+..+...+.+.|++++|.+
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHH
Confidence 76 23355556667778888888888888776543 2234566677777778888887766
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.42 E-value=8.3e-06 Score=55.66 Aligned_cols=134 Identities=14% Similarity=0.152 Sum_probs=104.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh-----hcchhhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL-----DLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~-----~~~~~~~~~ll~~~~~~g~~ 76 (153)
..|...|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ...+ ......+..+...+.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (234)
T TIGR02521 73 LYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDF 151 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCH
Confidence 35778899999999999987753 34556677777888999999999998 2211 12334566677888999999
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++|. +...|..+...+...|++++|.+.+++..+. ...+...+......+...|+.+.|..
T Consensus 152 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 152 DKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9887 4667888889999999999999999998876 24456667777778888888887765
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.40 E-value=4.6e-07 Score=64.94 Aligned_cols=135 Identities=25% Similarity=0.226 Sum_probs=74.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~ 77 (153)
..+.+.++++++.++++...+.. .+++...|..+-..+.+.|+.++|.+. + -...| |....+.++..+...|+.+
T Consensus 118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~ 197 (280)
T PF13429_consen 118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD 197 (280)
T ss_dssp H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence 34566677777777777765432 345666666666667777777777777 2 22334 3455666777777777766
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++. ++..|..+-.++...|+.++|...|++..... +.|......+.+++.+.|+.++|.+
T Consensus 198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 644 55666777777777777777777777766532 2256666666677777777777665
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.40 E-value=3.4e-06 Score=60.41 Aligned_cols=143 Identities=20% Similarity=0.095 Sum_probs=86.4
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH------hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL------QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
...+++++|.++++...+.. +++..+..++..+.+.++++++.++ ....+++...|..+...+.+.|+.++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp --------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 67899999999998876543 6777788899999999999999888 112345677888888999999999999
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh---------
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------- 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--------- 138 (153)
. +....+.++..+...|+.+++.++++...+.. ..|...+..+-.++..+|+.++|..
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9 67889999999999999999999999988665 4455667888999999999999988
Q ss_pred --HHHHHHHHHHHhh
Q 039275 139 --NIFLTTAIIEMYA 151 (153)
Q Consensus 139 --~~~~~~~li~~y~ 151 (153)
|+.+...+.+.+.
T Consensus 245 p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 245 PDDPLWLLAYADALE 259 (280)
T ss_dssp TT-HHHHHHHHHHHT
T ss_pred ccccccccccccccc
Confidence 6666666665553
No 26
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.34 E-value=2.9e-06 Score=52.09 Aligned_cols=71 Identities=10% Similarity=-0.014 Sum_probs=56.6
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCC-CccHHHHHHHHHHhcCCCchHH--------HHHH-----hhhhhcchhhHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWIL--------AKEL-----QIELDLSSYSLSSKT 67 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~--------a~~~-----~~~~~~~~~~~~~ll 67 (153)
|..+...+++.....+|..+++.|+ .|++.+|+.+|.+.++...-.+ .+.+ ..+++|+..+|+.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4567778999999999999999999 9999999999999887653211 1111 777899998888888
Q ss_pred HHHHh
Q 039275 68 SRYAH 72 (153)
Q Consensus 68 ~~~~~ 72 (153)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 76654
No 27
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.25 E-value=1e-06 Score=42.46 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=26.6
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHT 28 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p 28 (153)
+|.+|++.|+++.|.++|+.|++.|++|
T Consensus 7 ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 7 LLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999999999999988
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.18 E-value=9.6e-05 Score=59.20 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=31.3
Q ss_pred hcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcc-hhhHHHHHHHHHhcCCccccc
Q 039275 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLS-SYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~ll~~~~~~g~~~~a~ 80 (153)
..|++++|...|+++.+. -+.+...+..+-..+.+.|++++|.+. -....|+ ...+..+...+...|++++|.
T Consensus 88 ~~g~~~~A~~~l~~~l~~-~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~ 164 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAV-NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAI 164 (656)
T ss_pred hcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHH
Confidence 345555555555555442 111223333334444555555555544 1111222 233444445555555555444
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.17 E-value=7.3e-05 Score=59.89 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=73.2
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhh-hcchhhHHHHHHHHHhcCCcccc-
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IEL-DLSSYSLSSKTSRYAHSGRIRLA- 79 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~-~~~~~~~~~ll~~~~~~g~~~~a- 79 (153)
+.+.|++++|...++++.+..-.++...+..+..++.+.|++++|... . ... +.+...+..+-..+.+.|++++|
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 445566666666666654443223333333444555666666666665 1 111 22334555566667777777652
Q ss_pred ---c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 80 ---R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ---~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...+..+-..+...|++++|...+++.... .|+ ......+..++.+.|++++|..
T Consensus 267 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 267 LQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 2 4556666666666777777777776666643 232 3334445556666666666665
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.09 E-value=0.00014 Score=57.80 Aligned_cols=128 Identities=18% Similarity=0.110 Sum_probs=54.3
Q ss_pred CChhHHHHHHHHhHHcC-CCcc-HHHHHHHHHHhcCCCchHHHHHH-hhh--hhcc-hhhHHHHHHHHHhcCCccccc--
Q 039275 9 GRFNEALEPFGKLESLG-VHTD-EVTMVVVLTASSGPGAWILAKEL-QIE--LDLS-SYSLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g-~~p~-~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~-~~~~~~ll~~~~~~g~~~~a~-- 80 (153)
+++++|.+.|++....+ ..|+ ...+..+-..+...|++++|... ..- ..|+ ...|..+...+...|++++|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34555555555554432 2222 23333333444455555555555 111 1222 223334444444445544444
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+...|++++|.+.|++..+.. | +...+..+-..+.+.|++++|..
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 33444444444444444444444444444321 2 22333333344444444444444
No 31
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.07 E-value=0.00014 Score=53.70 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=110.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccH-------HHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDE-------VTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRY 70 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~ 70 (153)
..+|.+.|++.+...+..+|.+.|.--|. .+|+.++.-....+..+.-..+ ....+-+...-.+++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 35789999999999999999999876654 6788888877777766664444 333444556666777777
Q ss_pred HhcCCccccc-------------------------------------------hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 71 AHSGRIRLAR-------------------------------------------DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 71 ~~~g~~~~a~-------------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.++|+-++|. ++..+.+|=.-|.+.+.|.+|.+.|+.
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888877777 788899999999999999999999994
Q ss_pred HHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-. ..+|+..+|+-+-.++-++|+..+|.+
T Consensus 354 Al--~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 354 AL--KLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HH--hcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 44 568999999999999999999999987
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.06 E-value=0.00011 Score=55.50 Aligned_cols=135 Identities=11% Similarity=0.023 Sum_probs=83.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccH-----------------------------------------HHHHHHHHHh
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDE-----------------------------------------VTMVVVLTAS 40 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----------------------------------------~~~~~ll~~~ 40 (153)
...|.+.|++++|.+++..+.+.+..++. .....+..++
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l 273 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHH
Confidence 35678889999999999999877654322 1122223333
Q ss_pred cCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 41 SGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 41 ~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
...|+.++|.+. ....+.....--.++.+....++.+++. |...+-++-..+.+.+++++|.+.|+.
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444 1111111111111233333334444444 666677777888888889999988888
Q ss_pred HHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+. .|+..++..+-..+.+.|+.++|.+
T Consensus 354 al~~--~P~~~~~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 354 ALKQ--RPDAYDYAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HHhc--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8754 5888888888888888888888766
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.04 E-value=0.00017 Score=60.08 Aligned_cols=130 Identities=12% Similarity=0.047 Sum_probs=65.3
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCccccc--
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~-- 80 (153)
.+.|++++|...|++..+.. +++...+..+.....+.|++++|... -....|+...+..+-..+.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34445555555554444332 11222222222233344555555555 1122344455555556666666666665
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...++.+-..+...|++++|.+.|++..+. .| +...+..+-.++...|++++|..
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555666666666666666665543 23 33445555556666666666655
No 34
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.02 E-value=0.00019 Score=57.01 Aligned_cols=131 Identities=12% Similarity=-0.024 Sum_probs=105.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH-hh--hhh-cchhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL-QI--ELD-LSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~-~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+...|++++|+..|++.... .|+ ...|..+-..+...|++++|... .. ... .+...+..+...+...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 456789999999999998764 354 55777777788899999999988 22 222 345678888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+-..+.+.|++++|...|++..+. .| +...+..+-..+...|++++|..
T Consensus 418 A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 418 AGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHH
Confidence 98 5667778888899999999999999998754 35 45678888889999999999987
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=97.99 E-value=0.00036 Score=54.86 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=82.7
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhcc-hhhHHHHHHHHHhcCCccccc----
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDLS-SYSLSSKTSRYAHSGRIRLAR---- 80 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~-~~~~~~ll~~~~~~g~~~~a~---- 80 (153)
+++++|...+++..+.. +-+...+..+-..+...|++++|.+. +. ...|+ ...+..+-..+...|++++|.
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45778888888776642 23455555555666777888888877 22 23343 345666677788888888877
Q ss_pred --------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHhcCCCccccchh
Q 039275 81 --------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV-TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 --------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~ 138 (153)
+...+..+...+...|++++|.+.+++..... .|+.. .+..+-.++...|+.++|..
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 22233344555667788888888888876443 34333 34555566777888888887
No 36
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.94 E-value=6.8e-06 Score=38.52 Aligned_cols=26 Identities=46% Similarity=0.913 Sum_probs=24.2
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGV 26 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~ 26 (153)
||++|++.|++++|.++|++|.+.|+
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred HHHHHHccchHHHHHHHHHHHhHCcC
Confidence 58999999999999999999999875
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.91 E-value=0.00029 Score=53.37 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.0
Q ss_pred hH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DP--VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+. ....++-..+.+.|++++|.+.|+........||...+..+...+.+.|+.++|.+
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 55 56678888889999999999999965555557888888899999999999998877
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.88 E-value=0.0001 Score=59.46 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred cchhhHHHHHHHHHhcCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 039275 58 LSSYSLSSKTSRYAHSGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124 (153)
Q Consensus 58 ~~~~~~~~ll~~~~~~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 124 (153)
|+..++..+++.-...|+++.|. +.+-|..||-| .|+......++.-|+..|+.|+..|+..-+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 46677888888888899998888 77777788877 889999999999999999999999999999
Q ss_pred HHhcCCCccccchh
Q 039275 125 AASSGPGALDFGKS 138 (153)
Q Consensus 125 ~~~~~~g~~~~a~~ 138 (153)
-.+.++|....++.
T Consensus 279 ip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 279 IPQLSNGQTKYGEE 292 (1088)
T ss_pred Hhhhcchhhhhccc
Confidence 99999777666666
No 39
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=8.6e-05 Score=45.72 Aligned_cols=86 Identities=10% Similarity=0.021 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-----hhhh-hcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-----QIEL-DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEP 104 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-----~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~ 104 (153)
.|-...|..+...+++.....+ +.++ .|+..+|+.++++.+++.-=. ..-.++..+.+.+
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~--------------~~ie~kl~~LLtv 91 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS--------------EDIENKLTNLLTV 91 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc--------------hhHHHHHHHHHHH
Confidence 3445566677777888777776 7777 788888888877666544321 2223466778899
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 105 FGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 105 ~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
+++|...+++|+..||+.++..+.+.
T Consensus 92 YqDiL~~~lKP~~etYnivl~~Llkg 117 (120)
T PF08579_consen 92 YQDILSNKLKPNDETYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHh
Confidence 99999999999999999999988763
No 40
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.82 E-value=0.00018 Score=49.44 Aligned_cols=113 Identities=14% Similarity=0.100 Sum_probs=78.6
Q ss_pred HHHHHHhHHcCCCccHHHHHHHHHHhcCC-----CchH---HHHHH--hhhhhcchhhHHHHHHHHHhcCCccccchHHH
Q 039275 15 LEPFGKLESLGVHTDEVTMVVVLTASSGP-----GAWI---LAKEL--QIELDLSSYSLSSKTSRYAHSGRIRLARDPVS 84 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~---~a~~~--~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 84 (153)
.+.|+..... ..|-.+|..+++.+.+. |.++ .|++. +.|+..|..+|+.||+.|=+ |.+- ....
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---p~n~ 107 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---PRNF 107 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---cccH
Confidence 4455554222 34777788888777654 3333 23333 88888999999999988876 4432 2344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
+.++...|- -+-+-|.+++++|...|+-||..|+..+++.+++.+..-+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~ 156 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMK 156 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHH
Confidence 444444433 3568899999999999999999999999999998776543
No 41
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.0003 Score=53.29 Aligned_cols=114 Identities=7% Similarity=0.058 Sum_probs=82.4
Q ss_pred HHHHhHH---cCCCccHHHHHHHHHHhcCCCchHHHHHH--hhhhhc-----chhhHHHHHHHHHhcCCccccc------
Q 039275 17 PFGKLES---LGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDL-----SSYSLSSKTSRYAHSGRIRLAR------ 80 (153)
Q Consensus 17 ~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~------ 80 (153)
++..|.+ .+.+.+....-++++.+....+++++..+ +....| -..|..++|+.|.+.|..+++.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555533 35667788888899999999999999888 222222 2244567788888888877777
Q ss_pred -------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 81 -------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 81 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
|..++|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 78888888888888888888888888887766666667777666666655
No 42
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.80 E-value=0.001 Score=55.65 Aligned_cols=129 Identities=13% Similarity=0.070 Sum_probs=84.9
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcch-hhHHHHHHHHHhcCCccccc-
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSS-YSLSSKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~-~~~~~ll~~~~~~g~~~~a~- 80 (153)
.+.|++++|...|+++... +|+...+..+...+.+.|++++|..+ +.-+ .|+. ..+..+.....+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 520 YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 4778888888888877553 44444555556667778888888877 1111 2222 22222233334458888877
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcCCCccccchh
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE-VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+.+.|+.++|.+.|++.... .|+. ..+..+-.++.+.|++++|..
T Consensus 598 ~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 598 DLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5567777778888888888888888887754 4543 445555557888888888876
No 43
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.74 E-value=0.00088 Score=51.91 Aligned_cols=135 Identities=14% Similarity=0.116 Sum_probs=77.2
Q ss_pred hHhhcCChhHHHHHHHHhHHc---CCCcc----HHHHHHHHHHhcCCCchHHHHHH--------hh--h-hhcch-hhHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL---GVHTD----EVTMVVVLTASSGPGAWILAKEL--------QI--E-LDLSS-YSLS 64 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~~~~~~a~~~--------~~--~-~~~~~-~~~~ 64 (153)
.|...+++++|+.+|+++... ..-++ ..+++.|=.+|.+.|++++|... +. + -.|.+ .-.+
T Consensus 250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 455666666666666666432 11112 23333444456666666666655 11 0 01111 1233
Q ss_pred HHHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Ch
Q 039275 65 SKTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL------GVHT-DE 117 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~ 117 (153)
.+...++..+.+++|. ...+++.|-..|...|++++|.++|++.... +..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 4445555555555555 4567888888888888888888888777532 1222 24
Q ss_pred hhHHHHHHHhcCCCccccchh
Q 039275 118 VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 118 ~t~~~li~~~~~~g~~~~a~~ 138 (153)
..++.+-..|.+.+.++.|.+
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred HHHHHHHHHHHHhcccchHHH
Confidence 456677777777787777776
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.67 E-value=0.00092 Score=56.95 Aligned_cols=131 Identities=11% Similarity=0.064 Sum_probs=100.2
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IEL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..+...|++++|.++++. .++++..+..+-..+.+.|++++|.+. + ... +.+...+..+...|...|+.++
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 356788999999999872 355666777778888999999999998 1 112 3355678888999999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CC---ChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGV--HT---DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p---~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...+..+-..+...|++++|.++|+.+....- .| +...+..+-..+.+.|+.++|.+
T Consensus 656 A~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 98 456666777888899999999999999886432 12 23455566778888999998887
No 45
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.60 E-value=0.0021 Score=40.69 Aligned_cols=105 Identities=13% Similarity=0.080 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~ 105 (153)
|..++.++|-++++.|+++....+ .-|+.++...-..- +..... ...+.....+++.+|+..|++..|+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~---~~~~sp--l~Pt~~lL~AIv~sf~~n~~i~~al~~v 75 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD---YPPSSP--LYPTSRLLIAIVHSFGYNGDIFSALKLV 75 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc---cCCCCC--CCCCHHHHHHHHHHHHhcccHHHHHHHH
Confidence 567889999999999999988888 22232222100000 000000 0016788999999999999999999999
Q ss_pred HHHHH-cCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 106 GKLES-LGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 106 ~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.+.+ -++..+..+|..|++.+...-+......
T Consensus 76 d~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~~~~~ 109 (126)
T PF12921_consen 76 DFFSRKYPIPIPKEFWRRLLEWAYVLSSKREDRA 109 (126)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99984 4888899999999998877666544433
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.59 E-value=0.0018 Score=55.29 Aligned_cols=100 Identities=17% Similarity=0.040 Sum_probs=80.8
Q ss_pred HHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHH
Q 039275 37 LTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEP 104 (153)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~ 104 (153)
...+...|+.++|.++-...+.+...+..+-..+.+.|+.++|. +...+..+...+...|+.++|.+.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677788999999884444556667778889999999999998 678889999999999999999999
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 105 FGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 105 ~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++...+. .|+ ......+-.++.+.|++++|.+
T Consensus 660 l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 660 LAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHH
Confidence 9987653 443 4445666778889999999988
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=97.53 E-value=0.0031 Score=49.69 Aligned_cols=126 Identities=11% Similarity=-0.057 Sum_probs=87.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhcchh-hHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDLSSY-SLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~~~-~~~~ll~~~~~~g~~~~a 79 (153)
.+...|++++|...|++..+.+ +.+...+..+-..+...|++++|... + ....|+.. .+..+...+...|++++|
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA 425 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDA 425 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHH
Confidence 4567899999999999998753 33456677777788999999999998 2 23344432 233344456668888877
Q ss_pred c-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH-HHHHHHhcCCCc
Q 039275 80 R-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM-VVVLAASSGPGA 132 (153)
Q Consensus 80 ~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~ 132 (153)
. +...+..+-..+...|+.++|.+.+.++... .|+.... +.+...+++.|+
T Consensus 426 ~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 426 IRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH
Confidence 6 2334566677788999999999999887644 4544443 444456677774
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.50 E-value=0.0055 Score=50.44 Aligned_cols=134 Identities=8% Similarity=-0.006 Sum_probs=67.5
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhh----------hcchhhHHHHHHHHHhc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIEL----------DLSSYSLSSKTSRYAHS 73 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~ll~~~~~~ 73 (153)
++...|+++++++.|+.|...|.+....+-..+-++|...+.+++|..+-..+ .++......|..+|...
T Consensus 301 aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 301 ALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 44555566666666666665555544445555566666666666666651110 11222234555555555
Q ss_pred CCccccc--------------------------h-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 039275 74 GRIRLAR--------------------------D-PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAA 126 (153)
Q Consensus 74 g~~~~a~--------------------------~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 126 (153)
+++++|. | ...+..++..+...|+.++|++.++++.... .-|.-.....-+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v 459 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASI 459 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 5555555 0 1112233444555566666666666654321 1144444455555
Q ss_pred hcCCCccccchh
Q 039275 127 SSGPGALDFGKS 138 (153)
Q Consensus 127 ~~~~g~~~~a~~ 138 (153)
+...|.+.+|++
T Consensus 460 ~~~Rg~p~~A~~ 471 (822)
T PRK14574 460 YLARDLPRKAEQ 471 (822)
T ss_pred HHhcCCHHHHHH
Confidence 555555555555
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.47 E-value=0.0016 Score=49.12 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=75.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhc---chhhHHHHHHHHHhcCCcc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDL---SSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~---~~~~~~~ll~~~~~~g~~~ 77 (153)
++.+...++++.|+++|+++.+.. |+.. ..+...+...+.-.+|.++ ...+.. |......-.+.+.+.++.+
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 456677789999999999998875 5543 3466666666666667777 444432 3334444456678888888
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.|. +-.+|..|...|...|++++|+..+..+.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 887 77788889999999999999988887775
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.41 E-value=0.0061 Score=49.92 Aligned_cols=49 Identities=6% Similarity=-0.117 Sum_probs=21.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...+...|+.++|.++++++.... .-+...+..+...+...|++++|.+
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 334444455555555555544321 1123334444444444454444444
No 51
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.38 E-value=0.0032 Score=49.70 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=101.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
.|.+.|.++.|++.|++... +.|+ +..|+-|-+++-..|++.+|.+. .. .+.| .....+.|-..|.+.|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchH
Confidence 46778999999999998766 3454 57899999999999999999988 22 1222 34567778888889999888
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. -....|.|-..|-..|+.++|...+++..+ ++|+ +..|+.+-+.|-..|+.+.|.+
T Consensus 373 A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 373 ATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred HHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 87 456778888888899999999999888764 5674 4567777777777888887777
No 52
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.007 Score=42.62 Aligned_cols=111 Identities=11% Similarity=-0.019 Sum_probs=93.6
Q ss_pred CccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHH
Q 039275 27 HTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMIS 90 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~ 90 (153)
+-|....+.......+.|++.+|... -..-++|...|+-+--.|.+.|+.++|. +....|.|-.
T Consensus 97 ~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm 176 (257)
T COG5010 97 PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGM 176 (257)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence 33455666678888899999999888 3334678889999999999999999999 8899999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 91 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+.-.|+.+.|..++..-...+ .-|...-..+--+....|++++|+.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999988765 3366677788888999999999998
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.38 E-value=0.0038 Score=48.49 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=101.9
Q ss_pred hHhhcCChhHHHHHHHHhHH---c---CCCccHHHH-HHHHHHhcCCCchHHHHHH--------hhhhhcc----hhhHH
Q 039275 4 GYSQAGRFNEALEPFGKLES---L---GVHTDEVTM-VVVLTASSGPGAWILAKEL--------QIELDLS----SYSLS 64 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~---~---g~~p~~~~~-~~ll~~~~~~~~~~~a~~~--------~~~~~~~----~~~~~ 64 (153)
.|.+.|++++|...+++... . -..|.+... +.+...+...+.+++|..+ ..-+.++ ..+++
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 58999999999999987643 2 233444333 3444566777899999988 2112222 35788
Q ss_pred HHHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC----Chh
Q 039275 65 SKTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHT----DEV 118 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~ 118 (153)
.|-..|.+.|++++|. .....|.|-..|.+.++..+|.++|.+-..- -+.| ...
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~ 451 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTY 451 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHH
Confidence 9999999999999999 4677888889999999999999999876532 2334 457
Q ss_pred hHHHHHHHhcCCCccccchh
Q 039275 119 TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 119 t~~~li~~~~~~g~~~~a~~ 138 (153)
+|..|...|.+.|+++.|.+
T Consensus 452 ~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 452 TYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 89999999999999999998
No 54
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.36 E-value=0.0034 Score=45.53 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=68.4
Q ss_pred HHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccc----------hHHHHHHH----HHHHHhcCChHHHH
Q 039275 38 TASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLAR----------DPVSCKAM----ISGYSQAGRFNEAL 102 (153)
Q Consensus 38 ~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~----------~~~~~~~l----i~~~~~~g~~~~a~ 102 (153)
..+...|++++|.++ ..+ .+.......+..|.+.++++.|. +..+-..+ +......+.+.+|.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 567888999999999 333 44555667788888999998888 22222223 33333345789999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 103 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+|+++.+ .+.++..+.+.+..+...+|++++|++
T Consensus 188 y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 188 YIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999764 456788888999999999999999988
No 55
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.32 E-value=0.0009 Score=50.78 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 039275 59 SSYSLSSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV 123 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 123 (153)
+......+++......+++++. ...|.+++|..|.+.|..+++.++++.=...|+=||.+||+.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3444445555555555555554 4556679999999999999999999999999999999999999
Q ss_pred HHHhcCCCccccchh
Q 039275 124 LAASSGPGALDFGKS 138 (153)
Q Consensus 124 i~~~~~~g~~~~a~~ 138 (153)
++.+.+.|++..|.+
T Consensus 145 md~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHhhcccHHHHHH
Confidence 999999999999988
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.30 E-value=0.0095 Score=48.83 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=99.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
....-.|+.++|+++|.+.... -+.+...+..+-..+...|++++|.++ +. ...| +...+..+...+.+.|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 3456789999999999998762 244556688888899999999999998 22 2334 34556678888999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE-VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +.. |..+-..+...|+.++|...+++..+. .|+. ..+..+...+...+..+.|.+
T Consensus 102 A~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 102 ALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 98 555 888888999999999999999999875 3533 334455666767777776554
No 57
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.23 E-value=0.014 Score=48.24 Aligned_cols=130 Identities=13% Similarity=-0.010 Sum_probs=89.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH--HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHH-HH--HHHHHhcCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE--VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLS-SK--TSRYAHSGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~-~l--l~~~~~~g~~~ 77 (153)
...+.|+++.|++.|++..+. .|+. ..+ -++..+...|+.++|... +.-+.|+...+. .+ ...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 357889999999999998774 3443 344 777777888999999998 333455433333 33 45777779999
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 888 6677778888888999999999999888754 4666666444333333344433433
No 58
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.012 Score=45.03 Aligned_cols=80 Identities=14% Similarity=0.102 Sum_probs=48.0
Q ss_pred hcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 039275 57 DLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124 (153)
Q Consensus 57 ~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 124 (153)
+-|..+.+.|-..|-+.|+-.+|+ +..+-.=|-.-|....-++++.++|++-- =+.|+.+-|..+|
T Consensus 589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmi 666 (840)
T KOG2003|consen 589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMI 666 (840)
T ss_pred CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHH
Confidence 335567777888888888877777 33333334444555555566666665432 3456666666666
Q ss_pred HHhc-CCCccccchh
Q 039275 125 AASS-GPGALDFGKS 138 (153)
Q Consensus 125 ~~~~-~~g~~~~a~~ 138 (153)
..|. +.|++++|.+
T Consensus 667 asc~rrsgnyqka~d 681 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFD 681 (840)
T ss_pred HHHHHhcccHHHHHH
Confidence 5443 3466666655
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.17 E-value=0.018 Score=43.57 Aligned_cols=105 Identities=13% Similarity=0.144 Sum_probs=72.5
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHH-HHHHHHHhcCCCchHHHHHH---hhhhhcchhhHH--HHHHHHHhcCCccccc-
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVT-MVVVLTASSGPGAWILAKEL---QIELDLSSYSLS--SKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~--~ll~~~~~~g~~~~a~- 80 (153)
.|++++|.+....-.+.. +++.. |-..-.+..+.|+++.+.+. -....|+..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 588888887777654432 22222 22223444778888888888 233345544333 3356778888888888
Q ss_pred -----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039275 81 -----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114 (153)
Q Consensus 81 -----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 114 (153)
++.....+...|.+.|++++|.+++..+.+.+..
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 6777888889999999999999999999877644
No 60
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.17 E-value=0.011 Score=43.53 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=87.0
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHH---HHHHhcCCCchHHHHHH-hh--hhhcc-hhhHHHHHHHHHhcCCcc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVV---VLTASSGPGAWILAKEL-QI--ELDLS-SYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---ll~~~~~~~~~~~a~~~-~~--~~~~~-~~~~~~ll~~~~~~g~~~ 77 (153)
+...|++++|.+.+++..+. .+.|...+.. ........+..+.+.+. .. ...|+ ......+-..+...|+++
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 131 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDD-YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYD 131 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHH
Confidence 46778999999999988765 3334434431 22222234444544444 11 12222 223344556778899999
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh--hhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGV-HTDE--VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|. +...+..+-..+...|++++|.+.+++.....- .|+. ..|..+...+...|++++|..
T Consensus 132 ~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 132 RAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 887 566778888889999999999999998775432 2332 345577788899999999887
No 61
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.08 E-value=0.021 Score=36.97 Aligned_cols=85 Identities=13% Similarity=-0.065 Sum_probs=49.1
Q ss_pred HHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCCh
Q 039275 35 VVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRF 98 (153)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~ 98 (153)
..-..+...|++++|... .. ...| +...+..+-..+.+.|++++|. +...|..+-..+...|+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 344455566666666555 11 1222 3334444444455555555554 556677777778888888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHH
Q 039275 99 NEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
++|...|+..... .|+...+.
T Consensus 109 ~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 109 GLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHh--CCCChHHH
Confidence 8888888877653 46554443
No 62
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.07 E-value=0.019 Score=36.21 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=58.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|.+.|+.....+ +.+...+..+-..+.+.|++++|... ...+..+.. +.
T Consensus 26 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-------------------~~ 85 (135)
T TIGR02552 26 NLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-------------------DP 85 (135)
T ss_pred HHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------Ch
Confidence 4556677777777776665532 33555555666666666777766665 222222111 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVV 122 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 122 (153)
..|..+-..+...|++++|.+.|+...+. .|+...+..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHHH
Confidence 44555666777888888888888877754 355555443
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.019 Score=40.05 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=83.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
+|.+.|+...|.+-+++..++. +-+..++..+-..|-+.|..+.|.+- + -.+.| +..+-|..=-.+|..|.+++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 5778888888888888887752 23446666777777888877777666 2 22223 344555555566777777777
Q ss_pred c--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 R--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. ...+|..+-....+.|+++.|.+.|+.-.+..-. ...+...+..--.+.|++-.|..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 7 5667777777777778888887777766543211 12234444444455555555544
No 64
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.98 E-value=0.0069 Score=35.21 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=54.8
Q ss_pred hcCChhHHHHHHHHhHHcCC-CccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHH
Q 039275 7 QAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSC 85 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 85 (153)
+.|++++|+.+|+++....- .|+...+-.+-.++.+.|++++|..+-...+.+.... ...|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~------------------~~~~ 62 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNP------------------DIHY 62 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHH------------------HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCH------------------HHHH
Confidence 36899999999999977543 2355555567889999999999999932222222111 1222
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 039275 86 KAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.+-.++.+.|++++|.++|++
T Consensus 63 -l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 -LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp -HHHHHHHHTT-HHHHHHHHHH
T ss_pred -HHHHHHHHhCCHHHHHHHHhc
Confidence 335778888888888888865
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.96 E-value=0.0036 Score=45.86 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=92.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhh--cchhhH-HHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELD--LSSYSL-SSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~--~~~~~~-~~ll~~~~~~g~~~~ 78 (153)
+.|.+.|.+.+|.+.|..-... .|-+.||--+-.+|-+...++.|..+ ..|++ |-.+|+ .-+.+-+-..++.++
T Consensus 231 kCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHH
Confidence 4789999999999999887665 56777888888999999999999998 44432 333333 334455566666666
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccch
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
|. ++..-.++-.+|...|+++-|++++..+.+.|+.-- ..|..+--+|.-.+.+|.+.
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-eLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-ELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-HHHhhHHHHHHhhcchhhhH
Confidence 65 444555556678888888888888888888885433 34555555665555555443
No 66
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.95 E-value=0.03 Score=42.37 Aligned_cols=123 Identities=16% Similarity=-0.004 Sum_probs=88.7
Q ss_pred HHHHHHHhHHcCCCc------------cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 14 ALEPFGKLESLGVHT------------DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 14 a~~~~~~m~~~g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.++.+.++-..|... +.....+++..+...++++.|.++ +.=.+.+......+++.+...++-.+|.
T Consensus 141 fi~~~~~~~~~G~~lG~~~~i~~~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI 220 (395)
T PF09295_consen 141 FIKLFPKLFERGWKLGSDPEIQVPTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAI 220 (395)
T ss_pred HHHHHHHHhhcccccCCCCccCCCCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHH
Confidence 455666665555332 234455667777788999999999 2222333445556778887777766666
Q ss_pred ------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHhcCCCccccchh
Q 039275 81 ------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV-TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~ 138 (153)
+....+.-...+.+.++.+.|.++.++.... .|+.. +|..|..+|.+.|+++.|.-
T Consensus 221 ~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 221 RLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 5555555567789999999999999998864 68655 99999999999999999876
No 67
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.94 E-value=0.038 Score=37.75 Aligned_cols=108 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhc-chhhHHHHHHH-HHhcCCc--cccc--
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDL-SSYSLSSKTSR-YAHSGRI--RLAR-- 80 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~-~~~~~~~ll~~-~~~~g~~--~~a~-- 80 (153)
+.++++..+++..+. -+.|...|..+-..+...|++++|... -..+.| +...+..+-.+ +.+.|+. ++|.
T Consensus 54 ~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 334444444433332 244566666666677777888877777 222233 44455555554 3555653 4444
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT 119 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 119 (153)
+...+..+-..+.+.|++++|...|+++.+.. .|+..-
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r 180 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccH
Confidence 66777777777788888888888888876543 344433
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.83 E-value=0.029 Score=42.99 Aligned_cols=124 Identities=12% Similarity=0.101 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccccc----
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRLAR---- 80 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~---- 80 (153)
.++.+|++++.+..+ -++-|+.+...|-..|-+.|+-.+|.+. -+-++.|..+..=|-..|....=.+++.
T Consensus 572 ed~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 572 EDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred hCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445554443322 2666889999999999999998888888 2223444444444444444333333333
Q ss_pred -------hHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccc
Q 039275 81 -------DPVSCKAMISGY-SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134 (153)
Q Consensus 81 -------~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 134 (153)
+.+-|..||..| .+.|+..+|++++++..+ .+.-|.....-++.-|..+|..+
T Consensus 651 kaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 651 KAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh
Confidence 789999999665 567999999999999874 45567777777777888877654
No 69
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.79 E-value=0.0092 Score=37.81 Aligned_cols=58 Identities=9% Similarity=0.044 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHH---------------HcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLE---------------SLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|..++.++|.++++.|+++....+.+..= .....|+..+..+++.+|+..|++..|.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~ 73 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALK 73 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence 45688899999999999999999987651 12356899999999999999999999998
No 70
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.77 E-value=0.058 Score=37.44 Aligned_cols=135 Identities=16% Similarity=0.100 Sum_probs=87.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccH---HHHHHHHHHhcCCCchHHHHHH-h--hhhhcchh----hHHHHHHHHHh
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDE---VTMVVVLTASSGPGAWILAKEL-Q--IELDLSSY----SLSSKTSRYAH 72 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~~~----~~~~ll~~~~~ 72 (153)
..+.+.|++++|...|+++.... +.+. ..+..+-.++.+.|++++|... + ....|+.. .+..+-..+.+
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYN 119 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHH
Confidence 35678899999999999986642 1122 3556667788899999999999 1 12233222 22222222322
Q ss_pred c--------CCccccc------------hHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHcCC-C
Q 039275 73 S--------GRIRLAR------------DPVSC-----------------KAMISGYSQAGRFNEALEPFGKLESLGV-H 114 (153)
Q Consensus 73 ~--------g~~~~a~------------~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~-~ 114 (153)
. |+.++|. +...+ -.+-..+.+.|++++|...+++..+..- .
T Consensus 120 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (235)
T TIGR03302 120 QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDT 199 (235)
T ss_pred hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence 2 3444444 11111 1334567888999999999999986532 2
Q ss_pred C-ChhhHHHHHHHhcCCCccccchh
Q 039275 115 T-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 115 p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
| ....+..+..++.+.|++++|..
T Consensus 200 ~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 200 PATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 3 35678899999999999998876
No 71
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.76 E-value=0.013 Score=46.15 Aligned_cols=50 Identities=20% Similarity=0.210 Sum_probs=33.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHhcCCCccccchh
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVT-MVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~g~~~~a~~ 138 (153)
.....+...++.++|++.++++++ +.|++.+ |..+-..|-+.|+.+.|..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 445556667777777777777774 4575554 4444457777777777765
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.74 E-value=0.046 Score=41.87 Aligned_cols=103 Identities=19% Similarity=0.147 Sum_probs=60.3
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHH-HHHHHhcCCCchHHHHHH---hhhhhcc-hhhHHHHHHHHHhcCCcccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMV-VVLTASSGPGAWILAKEL---QIELDLS-SYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~ll~~~~~~g~~~~a 79 (153)
+...|++++|.+.++.+.+. .||..-|. ....-+.+.++.++|.+. -....|+ ....-.+-.+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 44566677777777776553 34433333 444455666666666666 2223344 33444455666667776666
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
. |+..|+.|-.+|...|+..++.....+.-
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 6 66677777777776666666666665554
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.69 E-value=0.078 Score=38.50 Aligned_cols=104 Identities=18% Similarity=0.080 Sum_probs=66.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcc-hhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLS-SYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~-~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|+.++|...|++..+.. +.+...|+.+-..+...|++++|.+. ..- +.|+ ...+..+-..+...|++++|
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3566788888888888776642 33567777777788888888888877 222 3343 34566666777777888887
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
. +.. ...........+++++|.+.|.+..
T Consensus 152 ~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 152 QDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHH
Confidence 7 111 1111122345667888888886644
No 74
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.0066 Score=39.14 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCChhhHH
Q 039275 63 LSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLE-----SLGVHTDEVTMV 121 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~ 121 (153)
...++..+...|++++|. +...|-.+|.++...|+..+|.++|+.+. +-|+.|+..+-.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 344555556666666666 77899999999999999999999998885 338999877643
No 75
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.63 E-value=0.039 Score=42.28 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=87.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCcc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
+-+.+.++.++|.+.++++... .|+ ....-.+-.++.+.|.+.+|..+ ....+.|...|..|-.+|.+.|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 3567889999999999999874 566 34444555788899999988888 4445667888999999999999988
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHh
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLAAS 127 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~ 127 (153)
++. .+.-.++...|++++|...+..-++.. -.|+..-+...|+..
T Consensus 426 ~a~-----~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 426 EAL-----LARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHH-----HHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 866 345577889999999999888877542 234444444555443
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.61 E-value=0.032 Score=40.50 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=80.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhh--cchhhHHHHHHHHHh----cCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELD--LSSYSLSSKTSRYAH----SGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~--~~~~~~~~ll~~~~~----~g~~~ 77 (153)
.+...|++++|+++++.- .+.......+..+.+.++++.|.+.-..++ .+..+...|..++.. .+.+.
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence 356678888888887642 456667777788888888888888822221 222334444444432 23455
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccc
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 134 (153)
+|. ++.+.|.+.......|++++|.+++++-.... .-+..+...++.+....|+..
T Consensus 185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~ 252 (290)
T PF04733_consen 185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPT 252 (290)
T ss_dssp HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCCh
Confidence 665 67778888888999999999999988866433 225567777888878888773
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.57 E-value=0.037 Score=47.54 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=97.6
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hc---chhhHHHHHHHHHhcCC
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DL---SSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~---~~~~~~~ll~~~~~~g~ 75 (153)
..-|.+.+++++|.++++.|.+. +.....+|......+.+...-+.|..+ .+-+ -| ........+..=-+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 45688899999999999999665 337788999999999999998888888 2221 12 33445555555667888
Q ss_pred ccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHhcCCCc
Q 039275 76 IRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE--VTMVVVLAASSGPGA 132 (153)
Q Consensus 76 ~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~ 132 (153)
.+.++ ....|+..|..-.++|+.+.+..+|++....++.|.. ..|.--+..=-+.|+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 88866 6788999999999999999999999999999988854 334444443333343
No 78
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.55 E-value=0.037 Score=39.11 Aligned_cols=105 Identities=19% Similarity=0.123 Sum_probs=86.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhc-chhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
....+.|++.+|+..|++..+- -+||...|+-+=-+|.+.|++++|..- -..+.| +....|.|.-.|.-.|+++.
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~ 186 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLED 186 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHH
Confidence 4567899999999999988653 568889999888999999999998877 333444 34568888888999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
|. |...-+.+-..-...|++++|..+-..-
T Consensus 187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 99 7888888989999999999999876543
No 79
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.53 E-value=0.097 Score=39.78 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=77.1
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHH-HHHHhcCCCchHHHHHHh---hhhhcchh--hHHHHHHHHHhcCCcccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVV-VLTASSGPGAWILAKELQ---IELDLSSY--SLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~---~~~~~~~~--~~~~ll~~~~~~g~~~~a 79 (153)
...|+++.|.+.+.+..+. .|++..+-. .-.+..+.|+.+.+.+.- ....|+.. ..-.....+.+.|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4578999999999776553 455444333 335667778999988881 12234443 333346777888888888
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
. +...+..+...+...|+++++.+++..+.+.++.+
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 7 67778888899999999999999999998886543
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.52 E-value=0.099 Score=39.09 Aligned_cols=102 Identities=11% Similarity=0.041 Sum_probs=70.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+...|++++|++.|++..+.. +-+...|..+-.++.+.|++++|... ..-+..+.. +.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-------------------~~ 70 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-------------------LA 70 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------------------CH
Confidence 4567899999999999998742 23556677777788899999999888 333332221 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
..|..+-..|...|++++|.+.|++.... .|+...+...+.-|
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 45666677778888888888888887753 46555555555444
No 81
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.51 E-value=0.015 Score=32.07 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=38.4
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.|++++|++.|+++.+. .+-+....-.+..++.+.|++++|.++
T Consensus 2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~ 47 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEEL 47 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5789999999999999775 233677777889999999999999999
No 82
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=96.46 E-value=0.0096 Score=38.22 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=82.2
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+|+.+.+.+.++.+..+++.+...+...+....+.++..|++.++.+...++-. ..+......+++.+-+.|.+++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~--~~~~yd~~~~~~~c~~~~l~~~-- 88 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK--TSNNYDLDKALRLCEKHGLYEE-- 88 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT--SSSSS-CTHHHHHHHTTTSHHH--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc--cccccCHHHHHHHHHhcchHHH--
Confidence 467788889999999999999988777889999999999999998888888822 1122333445555555554433
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHhcCCCcc
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESL-------GVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~ 133 (153)
.+.-|.+.|++++|.++...+..- .-.++...|..+++.|...+..
T Consensus 89 -------a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 89 -------AVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp -------HHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred -------HHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence 334667777777777754433211 1134677888888888876653
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.43 E-value=0.034 Score=41.55 Aligned_cols=109 Identities=14% Similarity=0.006 Sum_probs=82.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH----HHHHHhhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI----LAKELQIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~----~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.-+.+.|+.++|.++.++-.++++.|...++ +.. .+.++.+ .++++-..++-+...+.+|=..|.+.+.+.+
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~---~~~-l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPRLCRL---IPR-LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChhHHHH---Hhh-cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHH
Confidence 4567899999999999999999888883333 332 3444333 3333333344455778888899999999999
Q ss_pred cc-----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 79 AR-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 79 a~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
|. +..+|+-+-..+.+.|++.+|.+++++-...-..|
T Consensus 347 A~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 347 ASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 98 88999999999999999999999999876443333
No 84
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.42 E-value=0.08 Score=34.11 Aligned_cols=101 Identities=17% Similarity=0.112 Sum_probs=60.8
Q ss_pred hcCChhHHHHHHHHhHHcCCCccHHHHHH--HHHHhcCCCchHHHHHH-----hhhhhcch--hhHHHHHHHHHhcCCcc
Q 039275 7 QAGRFNEALEPFGKLESLGVHTDEVTMVV--VLTASSGPGAWILAKEL-----QIELDLSS--YSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~~~~~~~~~~a~~~-----~~~~~~~~--~~~~~ll~~~~~~g~~~ 77 (153)
..++...+...++.+.+..-.-....... +-..+...|++++|... .....|+. ...-.|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 46677777777777765422111222222 23566677777777776 11111111 12223456666777777
Q ss_pred ccc-----------hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 78 LAR-----------DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 78 ~a~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
+|. ....+...=..+.+.|+.++|...|+.
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 766 455666777889999999999999875
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.42 E-value=0.02 Score=41.93 Aligned_cols=133 Identities=17% Similarity=0.191 Sum_probs=64.1
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHH-HHHH-------hcCC
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKT-SRYA-------HSGR 75 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll-~~~~-------~~g~ 75 (153)
|..+|-+++|.++|..+...+- .-......++.-|-+..+|+.|.+. +.=.+.+...++.-| ..|| ...+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 4455556666666655544321 1222334555555566666666655 222233333333322 1222 2223
Q ss_pred ccccc---------hHH--HHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 76 IRLAR---------DPV--SCK-AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 76 ~~~a~---------~~~--~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++.|. |.. --+ .+=..+...|++.+|.+.++...+.+...-..+...+..+|.++|+.+.+..
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33332 111 111 1224455666777777777766665544444556666667777766665554
No 86
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.41 E-value=0.068 Score=43.81 Aligned_cols=132 Identities=16% Similarity=0.059 Sum_probs=94.4
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhh-hcchhhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIEL-DLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~-~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+++ |++++|.+++.+..+. -+-+..-|-+|-..+-..|+.+++... -..+ +.|.-.|..+-....+.|++++|.
T Consensus 150 far-g~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 455 9999999999999775 345677888999999999999999888 3333 345567888889999999999998
Q ss_pred ------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHhcCCCccccchh
Q 039275 81 ------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT----DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...+---+.-|-+.|+..+|++.|.+|.+..-.. -..+.-.++..+...++.+.|.+
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 22222233456788899999999999998653211 22333444556666666666555
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.39 E-value=0.13 Score=41.86 Aligned_cols=111 Identities=15% Similarity=0.033 Sum_probs=88.3
Q ss_pred CCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcch-hhHHHHHHHHHhcCCccccc------------hHHHHHHHH
Q 039275 26 VHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSS-YSLSSKTSRYAHSGRIRLAR------------DPVSCKAMI 89 (153)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~-~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li 89 (153)
++.++..+--|-....+.|.+++|..+ -..+.|+. .....+...+.+.+.+++|. +......+-
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 455677777777788888999999988 33345544 45666778888999999988 666777777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+.+.|+.++|.++|++.... .|+ ...+...-.++-+.|+.++|..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 8899999999999999999873 344 7788888889999999999887
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.39 E-value=0.099 Score=36.55 Aligned_cols=132 Identities=15% Similarity=0.057 Sum_probs=104.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHHhhh--hhc----chhhHHHHHHHHHhcCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKELQIE--LDL----SSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~----~~~~~~~ll~~~~~~g~~ 76 (153)
.|-+.|+.+.|.+-|++..+. .|+ -.+.|-.=.-+|..|.+++|...... ..| -..+|..+.-+..+.|+.
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 78 YYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQF 155 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCc
Confidence 577889999999999988764 343 35556666677889999999998221 222 235677777888889999
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.|. ...+.-.+-....+.|+...|..+++.....+. ++..+...-|.---..|+.+.+.+
T Consensus 156 ~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~ 228 (250)
T COG3063 156 DQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQR 228 (250)
T ss_pred hhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHH
Confidence 9998 667777888999999999999999999887765 999999999998888888876655
No 89
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.047 Score=42.66 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=92.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh------hc----chhhHHHHHHHHHh
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL------DL----SSYSLSSKTSRYAH 72 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~------~~----~~~~~~~ll~~~~~ 72 (153)
-|.+.++.+.|.++|.+.... .+-|+.+.+-+=-...+.+.+.+|..+ +.-+ .+ -.-+++.|-..|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 366788899999999876553 344566666665566777888888888 1111 11 11235666788889
Q ss_pred cCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 73 SGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 73 ~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
.+.+++|. +..++.++--.|...|+++.|.+.|++-. .++||..+-..+++.+...
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 99988888 88899999999999999999999999765 5789998888888866554
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.33 E-value=0.13 Score=40.48 Aligned_cols=107 Identities=16% Similarity=0.070 Sum_probs=81.4
Q ss_pred HHHHHHHHhcCCCchHHHHHH-hhhh--hcch-hhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhc
Q 039275 32 TMVVVLTASSGPGAWILAKEL-QIEL--DLSS-YSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQA 95 (153)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~-~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~ 95 (153)
++.-+-..+...|++++|.++ ...+ .|+. ..|-.-.+-|-+.|++.+|. |...-+-...-+.++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 444555667889999999999 4444 4443 35667778889999999988 888888888999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhH--------HHHHHHhcCCCccccchh
Q 039275 96 GRFNEALEPFGKLESLGVHTDEVTM--------VVVLAASSGPGALDFGKS 138 (153)
Q Consensus 96 g~~~~a~~~~~~m~~~g~~p~~~t~--------~~li~~~~~~g~~~~a~~ 138 (153)
|++++|.+++..+-+.+..|-...+ .-.-.+|.+.|++..|..
T Consensus 276 ~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999877765543332 344557888888888877
No 91
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.33 E-value=0.14 Score=32.74 Aligned_cols=73 Identities=5% Similarity=0.028 Sum_probs=46.5
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~ 76 (153)
+|..+.+.+.++....+++.+...+ ..+...++.++..+++..+-+...-+.. .++.......++.+.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3566777889999999999998877 4788899999999987654332222231 12333333345544444433
No 92
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.32 E-value=0.074 Score=34.25 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=64.7
Q ss_pred HHHHHHHHHhcCCCchHHHHHH----hhhhhcchhh-HH--HHHHHHHhcCCccccc---------------hHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL----QIELDLSSYS-LS--SKTSRYAHSGRIRLAR---------------DPVSCKAM 88 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~-~~--~ll~~~~~~g~~~~a~---------------~~~~~~~l 88 (153)
..|..++..+. .++...+.+. ....+.+... .. .+-+.+...|++++|. .....-.|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34555555543 5665655553 2222222122 11 2336777888888887 23344456
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-..+...|++++|...++......+.| ..+...-+.+.+.|+.++|..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~--~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKA--LAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHH--HHHHHHHHHHHHCCCHHHHHH
Confidence 677888999999999997755444433 345566778888999888875
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.29 E-value=0.055 Score=30.53 Aligned_cols=88 Identities=24% Similarity=0.283 Sum_probs=60.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+.+.|++++|.+.|++..+.. +.+...+..+-..+...+++++|.+. ......... +
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------------------~ 67 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-------------------N 67 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-------------------c
Confidence 35677899999999999887652 23345666677777778888888887 222211110 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
...+..+...+...|+.++|...+....+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 24566777778888889999888887664
No 94
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.27 E-value=0.036 Score=40.81 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHhcCCCchHHHHHHhhhh-hcchhhHHHHHHHHHhcCCccccc-------hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 38 TASSGPGAWILAKELQIEL-DLSSYSLSSKTSRYAHSGRIRLAR-------DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 38 ~~~~~~~~~~~a~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.-+...|....|.++.... .|+..-|...|+++++.+++++-. .+.-|...+..|.+.|+..+|..+...
T Consensus 185 ~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 3334444444444442222 234444444455555555544443 444555555555555555555555444
No 95
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.054 Score=41.81 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=89.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH---hhhhhcch-hhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL---QIELDLSS-YSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~-~~~~~ll~~~~~~g~~~~ 78 (153)
-|.++|++++|++.|.+... ..|| +..|.-.--+|...|+|+++.+. .-.+.|+- ..+.---+++-+.|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 47889999999999999877 5788 77777777788899999998888 33344443 244455588899999999
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHH--------H-c--CCCCChhhHHHHHHHhc
Q 039275 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLE--------S-L--GVHTDEVTMVVVLAASS 128 (153)
Q Consensus 79 a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~-~--g~~p~~~t~~~li~~~~ 128 (153)
|...+|-.+++.+|....-.--+.+++++.- . . .+-|+.....+.+..+-
T Consensus 202 al~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 202 ALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 9977888888888887777777777775531 1 1 23466666666555543
No 96
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.24 E-value=0.029 Score=36.25 Aligned_cols=75 Identities=9% Similarity=0.031 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 63 LSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
+..+-..+.+.|++++|. +...|..+-..+.+.|++++|...|+...... ..+...+..+-.++.+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 445667778899988887 78888889999999999999999999998643 33777788888899999
Q ss_pred Cccccchh
Q 039275 131 GALDFGKS 138 (153)
Q Consensus 131 g~~~~a~~ 138 (153)
|++++|..
T Consensus 106 g~~~eAi~ 113 (144)
T PRK15359 106 GEPGLARE 113 (144)
T ss_pred CCHHHHHH
Confidence 99999988
No 97
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.089 Score=40.40 Aligned_cols=132 Identities=15% Similarity=0.034 Sum_probs=70.2
Q ss_pred HhhcCChhHHHHHHHHhHHcC--CCccHHHHHHHHHHhcC-------------------------------CCchHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSG-------------------------------PGAWILAKE 51 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~-------------------------------~~~~~~a~~ 51 (153)
.-...++++|+++|++++++. -.-|..+|.-+|-..-. .+.-+.|..
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~ 351 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVM 351 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHH
Confidence 345678999999999998873 11255677665543322 111222222
Q ss_pred H-hhhhhcch---hhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 52 L-QIELDLSS---YSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 52 ~-~~~~~~~~---~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
. ++.++.|. ..|+-+=.-|....+...|. |-..|=.|=++|...+.+.-|+-.|++-.. ++|
T Consensus 352 YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kP 429 (559)
T KOG1155|consen 352 YFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKP 429 (559)
T ss_pred HHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCC
Confidence 2 33333333 34554445555555555554 444555555555555555555555554432 344
Q ss_pred -ChhhHHHHHHHhcCCCccccchh
Q 039275 116 -DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 116 -~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|...|.+|-++|.+.++.++|+.
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHH
Confidence 45555555555555555555555
No 98
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.10 E-value=0.34 Score=35.20 Aligned_cols=131 Identities=17% Similarity=0.022 Sum_probs=74.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|...|++++|.+.|++..+. .|+ ...+..+-.++...|++++|.+. -....|+..............++.++|
T Consensus 107 ~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A 184 (296)
T PRK11189 107 YLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQA 184 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHH
Confidence 467788999999998888763 343 45666666777788888888887 222334332112222223344555555
Q ss_pred c----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C--CC-ChhhHHHHHHHhcCCCccccchh
Q 039275 80 R----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG---V--HT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...|.. -......|+.+++ +.++.+.+.. + .| ....|..+-..+.+.|++++|..
T Consensus 185 ~~~l~~~~~~~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 185 KENLKQRYEKLDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHhhCCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4 2222321 2223345566554 3555554221 1 11 23467777778888888888877
No 99
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.07 E-value=0.14 Score=41.02 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=102.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcc-hhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLS-SYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~-~~~~~~ll~~~~~~g~~~~ 78 (153)
.++-+.|++.+|.+.|++...-.. --....+-|-+.+...|.+++|..+ +.- +-|. ....|.|-..|-+.|++++
T Consensus 328 nALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 355677999999999998877532 2345677788888999999999988 222 2333 3467888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. -...|+.|=..|-..|+.+.|.+.+.+-.. +.|. +..++.+-+.+-..|++.+|.+
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 98 455677888888889999999998887765 3463 4457888889999999999988
No 100
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.97 E-value=0.052 Score=39.99 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=36.4
Q ss_pred HHHHHHhcCCccccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 66 KTSRYAHSGRIRLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 66 ll~~~~~~g~~~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
-|.-+...|+...|. +..-|...|.+++..++|++-.++-+. +-+..-|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344445555555555 556666666666666666655544322 11124456666666666666555
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
..
T Consensus 257 ~~ 258 (319)
T PF04840_consen 257 SK 258 (319)
T ss_pred HH
Confidence 55
No 101
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.97 E-value=0.07 Score=43.47 Aligned_cols=134 Identities=18% Similarity=0.146 Sum_probs=70.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
+.|+..|+++.|.++|-+- ..++-.|..|.+.|.|+.|.++ -.+.+...+.|-+-..-.-+.|.+.+|
T Consensus 773 dhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ea 843 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEA 843 (1636)
T ss_pred HHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhh
Confidence 3455666666666666421 2345556677777777777777 333344444555555555666666666
Q ss_pred c----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHhcCCCccccchh---HHHHHHHHHHHh
Q 039275 80 R----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLAASSGPGALDFGKS---NIFLTTAIIEMY 150 (153)
Q Consensus 80 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~---~~~~~~~li~~y 150 (153)
. +.-.=..-|..|-+.|.-|.+.++.++-- || ..|-.-+-.-+-..|++..|++ ...-|.+-+++|
T Consensus 844 eqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h-----~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmy 918 (1636)
T KOG3616|consen 844 EQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH-----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMY 918 (1636)
T ss_pred hheeEEccCchHHHHHHHhhCcchHHHHHHHHhC-----hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHh
Confidence 6 11112233455555566555555554321 21 1233334445555666666666 444455555554
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.94 E-value=0.14 Score=31.14 Aligned_cols=92 Identities=12% Similarity=-0.014 Sum_probs=65.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcC--CCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCcc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
..+.+.|++++|.+.|.++.+.. -+.....+..+-..+.+.|++++|.+. +.- ..|+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------- 74 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK--------------- 74 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---------------
Confidence 35678899999999999997642 111234566678889999999999998 222 2232210
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
....+..+-..+.+.|+.++|.+.++++.+..
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 75 ---APDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ---ccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 12345566677788999999999999998764
No 103
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.94 E-value=0.11 Score=37.63 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=55.1
Q ss_pred hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 53 QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 53 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
+.|++.|..+|+.||+.+=+-.-+ ....+....-.|=+ +-.-+..++++|...|+.||..+-..+++++++.+-
T Consensus 100 eyGVerDl~vYk~LlnvfPKgkfi----P~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 100 EYGVERDLDVYKGLLNVFPKGKFI----PQNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhcchhhHHHHHHHHHhCcccccc----cHHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 667777777777777766554333 33445555555544 345688999999999999999999999999998765
Q ss_pred c
Q 039275 133 L 133 (153)
Q Consensus 133 ~ 133 (153)
.
T Consensus 174 p 174 (406)
T KOG3941|consen 174 P 174 (406)
T ss_pred c
Confidence 4
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.93 E-value=0.053 Score=43.54 Aligned_cols=134 Identities=14% Similarity=0.054 Sum_probs=90.5
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH------h--hhh---hcchhhHH------
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL------Q--IEL---DLSSYSLS------ 64 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~------~--~~~---~~~~~~~~------ 64 (153)
|-.|+..|+.++|..+..+-.+ -+||+.-|..+.+.....-.++.|.++ + +.. ..+...|.
T Consensus 431 i~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL 508 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence 5678888888888888777665 578999999999988888888888888 1 100 00111111
Q ss_pred ---------------HHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 65 ---------------SKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 65 ---------------~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
.+=.+..+.+++..|. +...||++-.+|.+.++-.+|...+++-.+-+..| -
T Consensus 509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w 587 (777)
T KOG1128|consen 509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-W 587 (777)
T ss_pred HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-C
Confidence 1112233444444444 67899999999999999999999999987766333 3
Q ss_pred hhHHHHHHHhcCCCccccchh
Q 039275 118 VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 118 ~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|...+-...+.|.++.|.+
T Consensus 588 ~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 588 QIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred eeeechhhhhhhcccHHHHHH
Confidence 335555555666677776666
No 105
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=95.92 E-value=0.19 Score=34.88 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=70.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCC-CccH-HHHHHHHHHhcCC--------CchHHHHHHh---hhhhcchh-hH-----
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGV-HTDE-VTMVVVLTASSGP--------GAWILAKELQ---IELDLSSY-SL----- 63 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~---~~~~~~~~-~~----- 63 (153)
..+.+.|++++|.+.|+++.+..- .|.. ..+..+-.++.+. |++++|.+.. ....|+.. .+
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 157 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKR 157 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHH
Confidence 357788999999999999976421 1221 1232222333332 6677777771 11123221 11
Q ss_pred ------------HHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 64 ------------SSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 64 ------------~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
-.+-..|.+.|++++|. ....|..+...+.+.|+.++|..+++.+...
T Consensus 158 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 158 MDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 13345677889988888 2367889999999999999999999998754
No 106
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.22 Score=36.12 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=71.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCc-cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
..+++++++|++.|.+... +.| |.+-|.-=-.+|++.|.++.|.+= +..+.-|...+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys------------------- 149 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS------------------- 149 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH-------------------
Confidence 3567778888888877766 344 344444555677777777776665 66666655544
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
.+|..|=.+|...|++.+|.+.|++-. .+.|+-.+|-.=++.--+
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaL--eldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKAL--ELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhh--ccCCCcHHHHHHHHHHHH
Confidence 778888899999999999999988765 367888888777765443
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.098 Score=41.18 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=74.3
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHH--HHH--HHHhcCCc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSS--KTS--RYAHSGRI 76 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~--ll~--~~~~~g~~ 76 (153)
++-+...|++++|.+.-.++...+ +-|...+..=+-++.+.+.+++|+++ +..... .+++. +=+ ...+.+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 345678899999999999999977 44555555666677999999999988 222111 12222 234 44577888
Q ss_pred cccc---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 77 RLAR---------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 77 ~~a~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
++|. |..+-..=-..+.+.|++++|+.+|+.+.+.
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 8887 2234444446778999999999999988433
No 108
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=0.25 Score=35.34 Aligned_cols=119 Identities=9% Similarity=0.076 Sum_probs=75.2
Q ss_pred HHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcchhhHHHHHHHHHhcCCccccc----------h
Q 039275 15 LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSSYSLSSKTSRYAHSGRIRLAR----------D 81 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~~~~~~ll~~~~~~g~~~~a~----------~ 81 (153)
-++.+++......-+....-.-..-|.+.+++++|++. +.+. +.-...-.++| +..+++-|. +
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~l----k~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILL----KMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHccch
Confidence 34455555555555544444555677889999999988 2222 21111112222 222222222 3
Q ss_pred HHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 82 PVSCK----AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 82 ~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|.+ +.|......++...|+-+|++|-+ +..|+..+.+....++..+|++++|+.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 44444 344445556789999999999863 468999999999999999999999998
No 109
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.037 Score=43.74 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
.+.+|-++=..|.-.++.+.|.+.|++-
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RA 447 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRA 447 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 110
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.79 E-value=0.043 Score=34.55 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHhhh-h--hcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKELQIE-L--DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~-~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.....+...+.+.|++++|.+.... . .|+ +...|..+-..+.+.|++++|...|+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---------------------NSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------------------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666777888888777211 1 121 446777888889999999999999998
Q ss_pred HHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..... ..+...+..+-..+...|+++.|.+
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 87654 3355666677778899999999877
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.77 E-value=0.37 Score=32.92 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=82.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
-.|...|+++.+......+.. |. . .+...++.+++... +.. -+.|...|..|-..|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 367888888886544422211 11 0 11223444444333 222 24456678888899999999999
Q ss_pred cc------------hHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGY-SQAGR--FNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~-~~~g~--~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...+..+-..+ ...|+ .++|.+++++..+.. | +...+..+-..+.+.|++++|..
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 98 777777777664 67777 599999999998764 4 55667777788899999999998
No 112
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.62 E-value=0.36 Score=32.13 Aligned_cols=93 Identities=15% Similarity=0.079 Sum_probs=68.6
Q ss_pred HHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccc--------hHH-
Q 039275 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLAR--------DPV- 83 (153)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~--------~~~- 83 (153)
..+..+.+.+.|++|+...|.-+++.+.+.|++..-..+ ..++-+|.......+-.+.... ..+. ...
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~--~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQY--PPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccC--hHHHHHHHHHHHHhhh
Confidence 355667777889999999999999999999999988888 7776666655444432222211 1111 334
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
.++.++..+...|++-+|.++....
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 7888889999999999999998775
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.56 E-value=0.39 Score=31.79 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=63.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc--HHHHHHHHHHhcCCCchHHHHHH-hhhh--hc-chhhHHHHHHHHHhcCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLTASSGPGAWILAKEL-QIEL--DL-SSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~-~~~~~~~ll~~~~~~g~~~ 77 (153)
.+...|++++|...|++..+....|+ ...+..+-..+.+.|++++|... ...+ .| +...+..+...+...|+..
T Consensus 44 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 44 SAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 45667888888888887765432222 35566666777788888888877 2222 22 2223333344444444433
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
.+.. -+..- ...+++|.+++++... ..|+. +..++..+...|+.
T Consensus 124 ~a~~--~~~~A------~~~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~~ 167 (172)
T PRK02603 124 EEAG--DQDEA------EALFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGRS 167 (172)
T ss_pred hHhh--CHHHH------HHHHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCcc
Confidence 3220 00000 0125667777766553 33554 66666666655543
No 114
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.56 E-value=0.053 Score=29.80 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=28.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 93 SQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...|++++|.++|++..... | +......+..++.+.|++++|.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 46 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEE 46 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677777777777776543 3 55555567777777777777776
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.56 E-value=0.038 Score=31.23 Aligned_cols=55 Identities=18% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+..+...+...|++++|.+.|+...... ..+..++..+...+...|+.+.|..
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 35 DAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHH
Confidence 455667777788899999999999887654 2233577778888888888887765
No 116
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.54 E-value=0.5 Score=34.06 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCChh--hHHHHHHHhcCCCccc
Q 039275 62 SLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGV-----HTDEV--TMVVVLAASSGPGALD 134 (153)
Q Consensus 62 ~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~--t~~~li~~~~~~g~~~ 134 (153)
.|..-+..|...|.... -..++..+...+.+.|++++|.++|++....-. +++.. .+..+| ++...|+..
T Consensus 137 ~Y~~A~~~y~~e~~~~~--a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v 213 (282)
T PF14938_consen 137 YYQKAAELYEQEGSPHS--AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHHHHTT-HHH--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HH
T ss_pred HHHHHHHHHHHCCChhh--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHH
Confidence 34444444444443333 346777888888999999999999988865422 22222 233433 444457777
Q ss_pred cchh
Q 039275 135 FGKS 138 (153)
Q Consensus 135 ~a~~ 138 (153)
.|.+
T Consensus 214 ~A~~ 217 (282)
T PF14938_consen 214 AARK 217 (282)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.51 E-value=0.4 Score=39.19 Aligned_cols=105 Identities=10% Similarity=0.054 Sum_probs=81.6
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHH-HHHHHHhcCCCchHHHHHH---hhhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTM-VVVLTASSGPGAWILAKEL---QIELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~---~~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
-.+.|.+++|..+++...+ +.||..-. ..+...+.+.+++++|... -....| +......+-.++.+.|+.++|
T Consensus 96 ~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHH
Confidence 4567899999999999887 56766544 4566788999999999998 222334 344556677889999999999
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
. +..+|-.+-..+-..|+.++|...|..-.+.
T Consensus 174 ~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 174 DACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8 5677777778888899999999999888643
No 118
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.40 E-value=0.6 Score=34.39 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccccc----------------hHHHHHHHHHHHHh
Q 039275 35 VVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLAR----------------DPVSCKAMISGYSQ 94 (153)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a~----------------~~~~~~~li~~~~~ 94 (153)
.+-..+...|++++|.+. +.. ..| +...+..+-..+...|++++|. ....|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344456677777777777 211 222 3345556666777777777776 12345567788899
Q ss_pred cCChHHHHHHHHHHHH
Q 039275 95 AGRFNEALEPFGKLES 110 (153)
Q Consensus 95 ~g~~~~a~~~~~~m~~ 110 (153)
.|++++|.+++++...
T Consensus 199 ~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 199 RGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999853
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.40 E-value=0.048 Score=29.80 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=40.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..+.+.|++++|.+.|++..+.. +-+...+..+-..+.+.|++++|...
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 53 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAY 53 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35788999999999999998875 33667777777888999999999988
No 120
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=0.48 Score=36.83 Aligned_cols=128 Identities=12% Similarity=0.005 Sum_probs=100.9
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccccc---
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
.+++.+|.++|++..... .-++..|-..+.+=.+.+.+..|..+ -.-++.-...|-..+.+=-..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456788999999887654 35666676777777788888888888 2223333456777777778888988888
Q ss_pred --------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 --------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 --------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.-+|++.|..-.+-..++.|..+++..+- +.|+..+|.--...=-+.|.+..+.+
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 889999999999999999999999999885 45999999888888888888877776
No 121
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.25 E-value=0.033 Score=38.54 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=34.4
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc-hHHHHHH
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-WILAKEL 52 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~ 52 (153)
+-|++++++|..+|+.||..|+..+++.+.+.+. +.....+
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 5689999999999999999999999999998875 3333333
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.24 E-value=0.51 Score=31.08 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=29.7
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCc--cHHHHHHHHHHhcCCCchHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHT--DEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+...|++++|...|++.....-.| ...++..+-..+.+.|++++|.+.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 455677777777777765442221 123555666666777777777776
No 123
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.19 E-value=0.052 Score=34.88 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=38.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----------hhhhhcchhh
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----------QIELDLSSYS 62 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~~ 62 (153)
..+...|++++|.++.+++... -+.|...|..+|.++...|+..+|.+. +.|+.|+..+
T Consensus 70 ~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 70 EALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3566788888888888888664 345677888888888888888888777 4566676544
No 124
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.89 Score=33.64 Aligned_cols=111 Identities=16% Similarity=0.124 Sum_probs=74.3
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHH-hhhhhcch--hhHHHHH-HHHHh
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKEL-QIELDLSS--YSLSSKT-SRYAH 72 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~--~~~~~ll-~~~~~ 72 (153)
|+.-|-...+|++|++.=+++.+.+-++.. ..|.-+-.......+++.|..+ .+....|. +--+.++ +.+..
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence 356677888999999999888776554442 3344455555566778887777 44443333 2233322 56677
Q ss_pred cCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 73 SGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 73 ~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
.|+++.|. -+.+.+.|..+|...|++++....+..+.+.
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 77777776 5667777888888888888888887776654
No 125
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.18 E-value=0.41 Score=30.03 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=67.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH--HHHHHHHHHhcCCCchHHHHHH-hhhh--hcchhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE--VTMVVVLTASSGPGAWILAKEL-QIEL--DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
++-..|+.++|+.+|++-...|...+. ..+-.+-+.+...|++++|..+ +... .|+......
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~------------- 76 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA------------- 76 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH-------------
Confidence 456789999999999999999877663 3444555678889999999999 2222 243221111
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 79 a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
...+ +-.++...|+.++|.+.+-.... ++...|.--|..|.
T Consensus 77 ---l~~f--~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 77 ---LRVF--LALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred ---HHHH--HHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1222 22366777888888877765542 44446666666654
No 126
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.75 Score=39.12 Aligned_cols=123 Identities=15% Similarity=0.111 Sum_probs=91.4
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---- 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~---- 80 (153)
+..++-+++|..+|++..- +....+.+|. ..++++.|.++...+. ...+|+.+.++..+.|.+.+|.
T Consensus 1058 ai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n-~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN-EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC-ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3456667888888875432 4444444444 3456777777732221 2356999999999999998888
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|+..|.-+|....+.|.+++-.+++..-++..-.|... +.+|-+|++.+++.+-++
T Consensus 1129 kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~ 1187 (1666)
T KOG0985|consen 1129 KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEE 1187 (1666)
T ss_pred hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHH
Confidence 99999999999999999999999988777766667655 468888998888887776
No 127
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.69 E-value=0.62 Score=33.65 Aligned_cols=123 Identities=10% Similarity=-0.012 Sum_probs=87.3
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~ 76 (153)
|...-+.+..+.|.++|.+.++.+ ....++....+|.-.+ .++.+.|.++ +.| ...+...|...|..+.+.++.
T Consensus 8 m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~ 86 (280)
T PF05843_consen 8 MRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH
Confidence 445567777999999999998654 4566777667776543 4556667777 444 355667788888999999998
Q ss_pred cccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 77 RLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 77 ~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
+.++ -...|...+..=.+.|+.+.+.++.+.+.+. -|+..++..+++-|
T Consensus 87 ~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 87 NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 8888 2358999999999999999999999888864 46666666666655
No 128
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=94.65 E-value=0.35 Score=29.25 Aligned_cols=89 Identities=11% Similarity=0.030 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCCchHHHHHHhhhh---hcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 32 TMVVVLTASSGPGAWILAKELQIEL---DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
++-.....+.+.|++++|.+..... .|+.. + ....+-.+...+.+.|++++|.+.|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-Y-----------------APNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-c-----------------cHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3444555667778888877771111 12110 0 1234556788899999999999999998
Q ss_pred HHcCCC--CChhhHHHHHHHhcCCCccccchh
Q 039275 109 ESLGVH--TDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 109 ~~~g~~--p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
....-. .....+..+..++.+.|+.+.|.+
T Consensus 66 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 66 VKKYPKSPKAPDALLKLGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHCCCCCcccHHHHHHHHHHHHhCChHHHHH
Confidence 864311 124557777788889999998887
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=1.2 Score=32.75 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=86.1
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhc-------------chh------
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDL-------------SSY------ 61 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~-------------~~~------ 61 (153)
.+.|.++.|++-|....+-+--.....||..+.-| +.++.++|.+. .+|++- |..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 57899999999999887654334456788877664 56778888877 444321 111
Q ss_pred --hHHHHHHHH-------HhcCCccccc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 62 --SLSSKTSRY-------AHSGRIRLAR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 62 --~~~~ll~~~-------~~~g~~~~a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
.-+.++.++ .+.++++.|. |++|.+.+-.. -..+++.+..+-++.+.....- -..
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChH
Confidence 122344333 4555555555 78888776554 3345677777777777755432 456
Q ss_pred hHHHHHHHhcCCCccccchh
Q 039275 119 TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 119 t~~~li~~~~~~g~~~~a~~ 138 (153)
||..++--||+..-++.|.+
T Consensus 312 TFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHH
Confidence 89999999999999888877
No 130
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.62 Score=36.01 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=91.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccH-HHHHHHHHHhcCCCchHHHHHH-hhhhhcch---hhHHHHHHHHHhcCCcc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDE-VTMVVVLTASSGPGAWILAKEL-QIELDLSS---YSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~---~~~~~ll~~~~~~g~~~ 77 (153)
+.|+-.++.++|+..|++..+- -|.. ..|+-+=+-|...++-..|.+- ++-++.+. ..|-.|=.+|.-.+...
T Consensus 338 NYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 3466778899999999988774 2333 3344444577777776666655 43333322 34444555555555544
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-|. |...|.+|=..|.+.++.++|.+.|+.-..-| ......+..+-+.+-+.++.++|.+
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 444 88888888888888888888888888877655 3356778888888888888888877
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.36 E-value=1.3 Score=34.98 Aligned_cols=75 Identities=16% Similarity=0.025 Sum_probs=46.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHH----HHHHhhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL----AKELQIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
|...+++++..++++..... .++...++..=|.++.+.|+..+ +.++-...+....+|=++--.|.-.|...+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 45667888888888877543 34444455555556666665444 33334444556667777666666667777777
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=94.20 E-value=1.9 Score=34.17 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+..|+.|-.-|....+..-..+++....
T Consensus 143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 143 PSLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred chHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 4555555555554444444444444443
No 133
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.16 E-value=0.14 Score=29.02 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESL----G-VHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|+.+-..|...|++++|.+.|++..+. | -.|+ ..++..+-..+...|++++|.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444455555555555555444321 1 0111 3344444445555555554444
No 134
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.06 E-value=0.74 Score=37.90 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=32.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh---HHHHHHHHHHHhhc
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS---NIFLTTAIIEMYAK 152 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~---~~~~~~~li~~y~k 152 (153)
.+..+..+|.+|..+++.+++.+... --|..+-+.|...|+++.|++ ....++--|++|.+
T Consensus 740 eaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k 803 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGK 803 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhc
Confidence 34455566666666666666554221 124555566666666666666 33334444455543
No 135
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.85 E-value=0.16 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888899999999999999999854
No 136
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=0.68 Score=39.33 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=27.5
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
|+...+.|++++.++.+.-.++...+|.+.+ .+|-+|++.+++.+.+++
T Consensus 1140 i~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1140 IDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH
Confidence 4455566666666665544455555554443 455666666666665555
No 137
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.72 E-value=0.86 Score=28.97 Aligned_cols=108 Identities=10% Similarity=0.010 Sum_probs=65.6
Q ss_pred HHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc------hHHHHHHHHHHHHhcCChHHHHH
Q 039275 35 VVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR------DPVSCKAMISGYSQAGRFNEALE 103 (153)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~li~~~~~~g~~~~a~~ 103 (153)
.++..+.+.+.......+ ..+ ..+....|.++..|++...-+.-. +.......+..|.+.+.++++..
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHH
Confidence 445555555555655555 222 245668888998888764432211 22334447778888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhcCC-Cccccchh------HHHHHHHHHHHhhc
Q 039275 104 PFGKLESLGVHTDEVTMVVVLAASSGP-GALDFGKS------NIFLTTAIIEMYAK 152 (153)
Q Consensus 104 ~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~------~~~~~~~li~~y~k 152 (153)
++..+.. +...++.+.+. ++++.|.+ +...|..+++.+..
T Consensus 91 l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 91 LYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLD 137 (140)
T ss_pred HHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 8877642 22233333333 66777776 77899888887753
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.69 E-value=0.19 Score=27.66 Aligned_cols=55 Identities=20% Similarity=0.136 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCC-ccccchh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPG-ALDFGKS 138 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~a~~ 138 (153)
...|..+=..+...|++++|.+.|++..+.. | +...|..+-.++.+.| ++++|.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 4577788888899999999999999888754 4 5556777777888888 6877766
No 139
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.55 E-value=0.1 Score=29.53 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHhcCCccccc-------------------hHHHHHHHHHHHHhcCChHHHH
Q 039275 60 SYSLSSKTSRYAHSGRIRLAR-------------------DPVSCKAMISGYSQAGRFNEAL 102 (153)
Q Consensus 60 ~~~~~~ll~~~~~~g~~~~a~-------------------~~~~~~~li~~~~~~g~~~~a~ 102 (153)
..+++.+-..|.+.|++++|. ...+++.+-..+...|++++|.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 356788889999999999998 2455666666666666666665
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.50 E-value=0.77 Score=30.25 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=45.3
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHh-cCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+...|++++|.++|+.+-.. .|....|-.=|.++ -..|++++|... ... +.||
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--------------------- 101 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--------------------- 101 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---------------------
Confidence 45677888888888777663 34444444334433 334677777666 111 2222
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
|+.++-.+=..+...|+.+.|.+.|+.-.
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444445555555666666666555444
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.23 E-value=0.27 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 91 GYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+...|++++|.+.|++..+.. | +...+..+-.++.+.|++++|..
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444455555555555544333 2 33333444444444455544443
No 142
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.99 E-value=0.87 Score=37.75 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=78.9
Q ss_pred HHHHHHHhHHcC--CCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc------
Q 039275 14 ALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR------ 80 (153)
Q Consensus 14 a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~------ 80 (153)
..-+........ ..-+...|--+-+++...|.+.+|..+ ....--+..+|-.+-++|-..|..++|.
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344444444 333456777777888888888888888 2222234557888888888888888887
Q ss_pred ---hHHHHH---HHHHHHHhcCChHHHHHHHHHHH--------HcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 81 ---DPVSCK---AMISGYSQAGRFNEALEPFGKLE--------SLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 81 ---~~~~~~---~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
++.+++ +|-.-+-+.|++++|.++++.|. ..+..|+...-.-..+-+.+.|+.++
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 223333 33456678899999999999864 23455666655555566666666654
No 143
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.94 E-value=0.7 Score=33.43 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 039275 61 YSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLES-----LGVHTDEVTMVVV 123 (153)
Q Consensus 61 ~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~l 123 (153)
.+...+++.+...|+.+.+. +...|..+|.+|.+.|+...|.+.|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34556777777777766666 889999999999999999999999999875 4899988887777
Q ss_pred HHHhcC
Q 039275 124 LAASSG 129 (153)
Q Consensus 124 i~~~~~ 129 (153)
.....+
T Consensus 234 ~~~~~~ 239 (280)
T COG3629 234 EEILRQ 239 (280)
T ss_pred HHHhcc
Confidence 766433
No 144
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.94 E-value=1.9 Score=34.92 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
-...|.+|-.=|.+.|++++|..+|++-.+.- .+..-|..+.++|.+
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 45778899999999999999999998876542 344445566665543
No 145
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=92.79 E-value=0.022 Score=36.56 Aligned_cols=107 Identities=10% Similarity=-0.014 Sum_probs=69.4
Q ss_pred HHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc------hHHHHHHHHHHHHhcCChHHHHHH
Q 039275 36 VLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR------DPVSCKAMISGYSQAGRFNEALEP 104 (153)
Q Consensus 36 ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~------~~~~~~~li~~~~~~g~~~~a~~~ 104 (153)
+++.+.+.+.++....+ ..+...+....+.++..|++.+..++.. +..-...++..+.+.|.++++.-+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd~~~~~~~c~~~~l~~~a~~L 92 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYDLDKALRLCEKHGLYEEAVYL 92 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS-CTHHHHHHHTTTSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccCHHHHHHHHHhcchHHHHHHH
Confidence 45566666666666555 2223355777888999999988766665 334556777888888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhcCCCccccchh------HHHHHHHHHHHhh
Q 039275 105 FGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTAIIEMYA 151 (153)
Q Consensus 105 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~------~~~~~~~li~~y~ 151 (153)
+.++....- .+..+.+.++++.|.+ +..+|..+++.|.
T Consensus 93 y~~~~~~~~---------al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 93 YSKLGNHDE---------ALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCL 136 (143)
T ss_dssp HHCCTTHTT---------CSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHC
T ss_pred HHHcccHHH---------HHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 887653321 1112445566666666 7889999988775
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.79 E-value=0.09 Score=30.41 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE-VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|-.+-..+.+.|++++|.++++. .. ..|+. ...-.+-.++.++|++++|.+
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444588999999999999999988 32 22322 333344778999999999875
No 147
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.78 E-value=0.94 Score=25.02 Aligned_cols=50 Identities=22% Similarity=0.084 Sum_probs=40.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
-..|.+.+++++|.+.++.+... .+.++..+...=..+.+.|++++|.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~ 51 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALED 51 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHH
Confidence 35788999999999999999886 233556666666788999999999888
No 148
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.76 E-value=0.59 Score=39.08 Aligned_cols=103 Identities=17% Similarity=0.166 Sum_probs=64.7
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhc----chhhHHHHHHHHHhcCCccccc---
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDL----SSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
.+..++|+++|.+..+. -+-|.+.-|=+=-.++..|++.+|.++.+.+.. +..+|-.+-..|...|++..|.
T Consensus 625 kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 34567788888777664 334555555555567788888888888444432 3345556666666666666665
Q ss_pred -----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 81 -----------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 81 -----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
++...+.|-.++.+.|++.+|.+....-...
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4555556666666667766666666554433
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.49 E-value=0.37 Score=26.44 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC-ChHHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAG-RFNEALEPFG 106 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g-~~~~a~~~~~ 106 (153)
++.+|..+=..+...|++++|... ...+..|.. +...|..+-..+.+.| ++++|.+.|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-------------------~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-------------------NAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-------------------HHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------CHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 345566666666777777777776 333333322 3466777888888888 7999999888
Q ss_pred HHHH
Q 039275 107 KLES 110 (153)
Q Consensus 107 ~m~~ 110 (153)
+-.+
T Consensus 63 ~al~ 66 (69)
T PF13414_consen 63 KALK 66 (69)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 150
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.40 E-value=0.52 Score=22.79 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
..+++.|-..|...|++++|.+++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 36789999999999999999999998863
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.34 E-value=1.2 Score=31.92 Aligned_cols=86 Identities=9% Similarity=-0.079 Sum_probs=54.2
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHHhhhh---hcc-hhhHHHHHHHHHhcCCcc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKELQIEL---DLS-SYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~-~~~~~~ll~~~~~~g~~~ 77 (153)
.+.|++++|+..|+.+.+.- |+. ..+-.+-..+...|++++|......+ .|+ ....
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~-------------- 217 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA-------------- 217 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh--------------
Confidence 45688888888888887642 322 34445667778888888888772222 122 1122
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
..+-.+...+...|+.++|.++|+++.+.-
T Consensus 218 -----dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 218 -----DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 223334455667888888888888887653
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.17 E-value=0.6 Score=33.68 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=80.3
Q ss_pred ChhHHHHHHHHhHH-----cCCCccHHHHHHHHHHhcCCCchHHHHHH---------hhhhhcchhhHHHHHHHHHhcCC
Q 039275 10 RFNEALEPFGKLES-----LGVHTDEVTMVVVLTASSGPGAWILAKEL---------QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 10 ~~~~a~~~~~~m~~-----~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
++++|.++|++.-. ..+..-...|......+.+.++...+-.. +.....-...|...+..|.+.|+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence 66777777766522 22444456666666666666553332222 22222223467778899999999
Q ss_pred ccccchHHHHHHHHHHHHhc-CChHHHHHHHHHHHHc----CCCC--ChhhHHHHHHHhcCCCccccchh
Q 039275 76 IRLARDPVSCKAMISGYSQA-GRFNEALEPFGKLESL----GVHT--DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 76 ~~~a~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..|- .++..+-..|-.. |++++|.+.|++-.+. | .| -...+..+...+.+.|++++|.+
T Consensus 110 ~~~aA--~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 110 FSQAA--KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHH--HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 98866 7888888888888 9999999999887532 3 33 24556778888999999999988
No 153
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.16 E-value=0.76 Score=27.72 Aligned_cols=58 Identities=10% Similarity=-0.040 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhh----hhcchhhHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----LDLSSYSLSSKT 67 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~ll 67 (153)
+.=++.+-++.+....+.|++.+....|.||-+.+++..|..+..+ ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3345666667777788999999999999999999999999998333 333444555554
No 154
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.06 E-value=0.74 Score=28.05 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=36.7
Q ss_pred HHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHH
Q 039275 13 EALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKT 67 (153)
Q Consensus 13 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll 67 (153)
+..+-++.+-...+.|++.+....|.+|-+.+++..|..+ +.........|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 4555566666778999999999999999999999999998 333333333565554
No 155
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=92.05 E-value=2.8 Score=36.93 Aligned_cols=55 Identities=7% Similarity=-0.003 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccch
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
-..|..|...|.+.+++++|.++|+.|.+. ++-....|...+.++.++..-+.|.
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHH
Confidence 355666666666666666666666666533 2233445555555555555544333
No 156
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=92.03 E-value=0.87 Score=23.54 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAA 126 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 126 (153)
+.-.-+.|-++++..++++|++.|+..+...+..++.-
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 44457889999999999999999999999999888764
No 157
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.03 E-value=4.3 Score=34.35 Aligned_cols=131 Identities=8% Similarity=0.015 Sum_probs=72.7
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHH-HHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-TASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
++.|-+.+++++|.++.+.-.. ..|+...+-.++ ..+.+.++.+.+-.+ --+..+...-|+.+-..|.+.++.-.
T Consensus 38 i~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~- 114 (906)
T PRK14720 38 IDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGE- 114 (906)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhh-
Confidence 4455566666666666653332 233332222111 133444444444444 11112222223333333334444333
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...+-.+-..|-+.|+.+++..+|++..+.. .-+....+.+--.+... ++++|.+
T Consensus 115 -~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 115 -NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred -hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 33566677788888899999999999998765 23666677777777777 8888888
No 158
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.65 E-value=0.96 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
.+|..+-..|.+.|++++|.++|++..+. .|+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 35778889999999999999999999875 46544
No 159
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=3.4 Score=31.83 Aligned_cols=47 Identities=6% Similarity=-0.034 Sum_probs=36.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+...|++++|.-.|.+-+. +.| +-.+|..++.+|...|++.+|.-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred HHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 445677888888888877664 454 67788889998888888888776
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=1.9 Score=32.49 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=74.1
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHH-HhcCC----CchHHHHHH-----hhhhhcchh-hHHHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT-ASSGP----GAWILAKEL-----QIELDLSSY-SLSSKTSRY 70 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~----~~~~~a~~~-----~~~~~~~~~-~~~~ll~~~ 70 (153)
+-.|.+.+++++|..+.+.+.. ..|-.....-+.. ++.+. .++.-|..+ .++.+.|.+ -..++..++
T Consensus 292 ~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 292 IIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 4467888999999988776533 2333333333332 22222 123334444 333332221 112233333
Q ss_pred HhcCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH-HHhcCCCccccc
Q 039275 71 AHSGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-AASSGPGALDFG 136 (153)
Q Consensus 71 ~~~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a 136 (153)
--..++++.. |...| .+-++.+..|...+|+++|-.+....++ +..+|-+++ .++.+.++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 3333333333 33333 4678888899999999999776644433 555665555 588899999988
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
++
T Consensus 448 W~ 449 (557)
T KOG3785|consen 448 WD 449 (557)
T ss_pred HH
Confidence 88
No 161
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=91.42 E-value=1.2 Score=37.36 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..+-|-+-..++..|++.+|..+|...++..- -...+|..+-.+|...|.+..|.+
T Consensus 645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 645 NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHH
Confidence 445556666777888999999999999887653 344567888888888888888888
No 162
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.99 E-value=1 Score=33.53 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=65.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-------hhhhhcchhhHHHHHHHHHhcCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------QIELDLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~ll~~~~~~g~~ 76 (153)
.|.=.++++.|...++++.+-|+. ++..|+-+--+|.-.+.+|-+.-- -.....-..+|-.|-....-.|++
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 455567899999999999999885 445555444444444554443322 110011112232222222333333
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
.-|. ....+|.|----.+.|++++|..+++.-... .|+.
T Consensus 412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~--~P~m 462 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV--MPDM 462 (478)
T ss_pred HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh--Cccc
Confidence 3333 5678888888888999999999999886643 4543
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.98 E-value=0.88 Score=34.06 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..|.+.|++++|...+++..... ..+...|..+-.+|.+.|++++|..
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34567777888899999999999999998653 2256678888889999999999988
No 164
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=90.96 E-value=0.76 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
...-|..|+.-|..+|..++|.+++.++..
T Consensus 38 ~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 38 EHGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456789999999999999999999999987
No 165
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=90.70 E-value=7 Score=33.19 Aligned_cols=78 Identities=12% Similarity=0.035 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhh---hcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIEL---DLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~ 106 (153)
..+.++-.+|.+.|+.+++.+. ++-+ +.|..+.|.+-..|... ++++|. ..+...+..+....++.++.++|.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~--~m~~KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI--TYLKKAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH--HHHHHHHHHHHhhhcchHHHHHHH
Confidence 4555666666777777777766 1111 34555667777777777 777766 666666666777777777777777
Q ss_pred HHHHc
Q 039275 107 KLESL 111 (153)
Q Consensus 107 ~m~~~ 111 (153)
++...
T Consensus 194 k~~~~ 198 (906)
T PRK14720 194 KLVHY 198 (906)
T ss_pred HHHhc
Confidence 76644
No 166
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.67 E-value=3.2 Score=34.86 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=26.6
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.|.+++|..+|++-++..+ .|.+ |-..|+|++|.++
T Consensus 811 ieLgMlEeA~~lYr~ckR~DL------lNKl---yQs~g~w~eA~ei 848 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDL------LNKL---YQSQGMWSEAFEI 848 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHH------HHHH---HHhcccHHHHHHH
Confidence 456888899999988877532 3333 3446888888888
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=90.58 E-value=2.4 Score=27.99 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCccccc-----------h----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 039275 62 SLSSKTSRYAHSGRIRLAR-----------D----PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLA 125 (153)
Q Consensus 62 ~~~~ll~~~~~~g~~~~a~-----------~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~ 125 (153)
.+..+-..+...|++++|. + ...|..+-..+.+.|++++|.+.+++.... .| +...+..+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4555666677778877777 1 246777778888888888888888887754 34 3444555566
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
.+...|+...+..
T Consensus 115 ~~~~~g~~~~a~~ 127 (172)
T PRK02603 115 IYHKRGEKAEEAG 127 (172)
T ss_pred HHHHcCChHhHhh
Confidence 7777777665554
No 168
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=4.9 Score=29.06 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=79.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhc-chhhHHHHHHHH----HhcCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDL-SSYSLSSKTSRY----AHSGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~-~~~~~~~ll~~~----~~~g~~~ 77 (153)
.|+..|++++|.+..+.. . +.....-=+..+.+..+++.|.+. +..... +..+-+.|..++ .-.+.+.
T Consensus 117 i~~~~~~~deAl~~~~~~--~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG--E----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HhhcCCChHHHHHHHhcc--c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence 478889999999988762 1 222222223344566677777766 222222 223444343333 3344455
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|. +..+.|-+...+...|++++|..++++...+. .-|..|...+|.+--..|.-.++..
T Consensus 191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHH
Confidence 555 66777777788889999999999999988654 2245566666666666666654443
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=90.42 E-value=0.57 Score=25.94 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=27.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|.+.+++++|.++++.+.... ..+...+...-.++.+.|++++|.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~ 50 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALE 50 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHH
Confidence 34566666666666666666543 1144444445556666666666665
No 170
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=3.4 Score=32.45 Aligned_cols=129 Identities=9% Similarity=-0.012 Sum_probs=86.6
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh-cchhhHHHHHHHHHhcCCccccc---
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD-LSSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~-~~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
.|+...|.+-|+......-.++.- |-.+-..|....+.++..+. -..+. -|..+|-.--.++--.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 466777777777776654333331 55555567777776666666 22222 24456665555555566666665
Q ss_pred ---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|-.+-.+..+.+++++++..|++-++. +.--...|+-+-..+..+++++.|.+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 5566666666778899999999999998865 33345567888889999999999887
No 171
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=8.7 Score=30.88 Aligned_cols=108 Identities=13% Similarity=-0.039 Sum_probs=71.0
Q ss_pred hhHhhcCChhHHHHHHH--------HhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-------hhhhhcchhhHHHHH
Q 039275 3 SGYSQAGRFNEALEPFG--------KLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------QIELDLSSYSLSSKT 67 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~ll 67 (153)
.--...|+++.|++++. .+...+..|-.+ ..++..+.+.++-+.|.++ .+.-.+.. ..
T Consensus 384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s---~~-- 456 (652)
T KOG2376|consen 384 QLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS---IA-- 456 (652)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc---hH--
Confidence 34567899999999998 555555655554 4455555666554444433 22212211 11
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 68 SRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 68 ~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
-..+|.-....-.+.|+.++|..+++++.+.+ .+|..+...++.+|++..
T Consensus 457 -------------l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 457 -------------LLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred -------------HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 12445555556677899999999999998654 689999999999998763
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=90.00 E-value=3.3 Score=25.96 Aligned_cols=68 Identities=19% Similarity=0.143 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHH-HHHhcCCCccccchh--------HHHHHHHHHHHh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD---EVTMVVV-LAASSGPGALDFGKS--------NIFLTTAIIEMY 150 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~l-i~~~~~~g~~~~a~~--------~~~~~~~li~~y 150 (153)
..+-.+-+++...|++++|..+|++..... |+ ......+ --++...|+.++|.+ +..-|..-|..|
T Consensus 39 ~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 39 RALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344467788899999999999999988653 43 2222222 236678899999888 555677777766
Q ss_pred hc
Q 039275 151 AK 152 (153)
Q Consensus 151 ~k 152 (153)
+.
T Consensus 117 a~ 118 (120)
T PF12688_consen 117 AD 118 (120)
T ss_pred Hh
Confidence 53
No 173
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.89 E-value=6.8 Score=32.91 Aligned_cols=134 Identities=16% Similarity=-0.001 Sum_probs=80.1
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHH-hhh------h-hc--chhhHHHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKEL-QIE------L-DL--SSYSLSSKTSRY 70 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~-~~~------~-~~--~~~~~~~ll~~~ 70 (153)
+...|++++|...+++....--..+. ...+.+-..+...|++++|... ... . .+ -......+-..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 45688999999999887653111111 2334444556778898888777 111 1 11 122344555677
Q ss_pred HhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC--ChhhHHHHHHH
Q 039275 71 AHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL--GVHT--DEVTMVVVLAA 126 (153)
Q Consensus 71 ~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~t~~~li~~ 126 (153)
...|++++|. ....+..+-..+...|++++|...+.+.... ...| ....+..+-..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 7889888886 0112333344567779999999998887532 1122 23334445556
Q ss_pred hcCCCccccchh
Q 039275 127 SSGPGALDFGKS 138 (153)
Q Consensus 127 ~~~~g~~~~a~~ 138 (153)
....|+.+.|.+
T Consensus 622 ~~~~G~~~~A~~ 633 (903)
T PRK04841 622 SLARGDLDNARR 633 (903)
T ss_pred HHHcCCHHHHHH
Confidence 677888888876
No 174
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.82 E-value=3.8 Score=32.53 Aligned_cols=105 Identities=12% Similarity=0.069 Sum_probs=66.3
Q ss_pred hhHHHHHHHHh-HHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCccccchHHHHH
Q 039275 11 FNEALEPFGKL-ESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCK 86 (153)
Q Consensus 11 ~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 86 (153)
+.+..++|-++ .+.+.++|+.++..|=--|--.|.++.|.+. --.++|+ |-..||
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn---------------------d~~lWN 468 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN---------------------DYLLWN 468 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc---------------------hHHHHH
Confidence 34455555555 3444445555555444445555666665555 2223333 558899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-hHHHHHHHhcCCCccccchh
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEV-TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~ 138 (153)
-|=.+++...+..+|...|++-.+ ++|.-+ ..-.|--+|..+|.+++|..
T Consensus 469 RLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 469 RLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999999998875 456432 23334456788888888877
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=89.73 E-value=2.1 Score=30.94 Aligned_cols=107 Identities=12% Similarity=0.022 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHhhh-hhc---chhhHHHHHHH-HHhcCCccccc------------hHHHHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKELQIE-LDL---SSYSLSSKTSR-YAHSGRIRLAR------------DPVSCKAMISGYS 93 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~~~~-~~~---~~~~~~~ll~~-~~~~g~~~~a~------------~~~~~~~li~~~~ 93 (153)
.+|..++..+-+.+..+.|.++... ... +..+|...... |...++.+.|. +...|..-+..+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677777777777778888888111 111 22233333233 22234444455 7888999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHhcCCCccccchh
Q 039275 94 QAGRFNEALEPFGKLESLGVHTD---EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.|+.+.|..+|++.... +.++ ...|...++.=.+.|+.+....
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998855 3222 3478888887777777776555
No 176
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=89.52 E-value=6.6 Score=30.51 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=36.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+|.+.|++++|+..|++-... .|+. ..|..+-.+|.+.|+.++|.+.
T Consensus 84 AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~ 134 (453)
T PLN03098 84 SLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADC 134 (453)
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 577888888888888886663 4554 3477778888888888888877
No 177
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=89.45 E-value=8.9 Score=31.46 Aligned_cols=130 Identities=10% Similarity=-0.022 Sum_probs=71.2
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhh--cch-hhHHHHHHHHHhcCCccccc-
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELD--LSS-YSLSSKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~--~~~-~~~~~ll~~~~~~g~~~~a~- 80 (153)
.++..+++|..+|.+-+. ..|+..+|-.-.+.---.++.++|.++ +..++ |+- ..|-.+=.-+-+.++++.|+
T Consensus 629 ~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 629 FENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred hccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 455667777777776655 456666666555555556667777776 22221 111 12222223334444444444
Q ss_pred -----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 -----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 -----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+..|-.|-.---+.|++-+|..+|+.-+..+ .-+...|...|..=.+.|+.++|+.
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 34444444444455666666766666655443 2255556666666666666666655
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=89.07 E-value=10 Score=30.19 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|.++-......|++++|...+++..... |+...|..+-..+...|+.++|.+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44667777666667899999999999988665 788889999999999999999888
No 179
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=6.1 Score=29.41 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=33.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 95 AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 95 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.-+++++.-++..=.+.|+-||.+|+..+|+.+.+.+++..|.+
T Consensus 113 ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~ 156 (418)
T KOG4570|consen 113 KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAAS 156 (418)
T ss_pred ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHH
Confidence 33677777777777777888888888888888888888877776
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.53 E-value=7.2 Score=27.88 Aligned_cols=133 Identities=18% Similarity=0.116 Sum_probs=88.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCcc---HHHHHHHHHHhcCCCchHHHHHH---hhhhhc--chhhHHHHHHHHHhcCCc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTD---EVTMVVVLTASSGPGAWILAKEL---QIELDL--SSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~--~~~~~~~ll~~~~~~g~~ 76 (153)
-.+.|++++|.+-|+.+.+. .+-+ ..+.--++-+..+.+++++|... ....-| ...-|..-|++++..-.+
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence 35789999999999999754 2222 33344455678899999998887 111112 223455566666655555
Q ss_pred cccc-------------------------------------hHHHHHH--HHHHHHhcCChHHHHHHHHHHHHcC--CCC
Q 039275 77 RLAR-------------------------------------DPVSCKA--MISGYSQAGRFNEALEPFGKLESLG--VHT 115 (153)
Q Consensus 77 ~~a~-------------------------------------~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g--~~p 115 (153)
+... |.....- +-.-|.+.|.+-.|..-+++|.+.= ..-
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 5544 2222222 2356789999999999999999771 122
Q ss_pred ChhhHHHHHHHhcCCCccccchh
Q 039275 116 DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 116 ~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.....-.+..+|.+.|..++|..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHH
Confidence 33456677789999999998887
No 181
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.51 E-value=1.5 Score=22.59 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=31.3
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTA 39 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 39 (153)
...-+.|-..++...+++|.+.|+-.+...|..++.-
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3445778888999999999999999999999888764
No 182
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=88.48 E-value=4.7 Score=26.40 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
+|..+-..+...|++++|.+.++....
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555555556666666666555543
No 183
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.34 E-value=6.5 Score=30.65 Aligned_cols=124 Identities=14% Similarity=-0.020 Sum_probs=73.0
Q ss_pred hhcCChhHHHHHHHHhHHcC----CCcc-HHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHH--HhcCC
Q 039275 6 SQAGRFNEALEPFGKLESLG----VHTD-EVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRY--AHSGR 75 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g----~~p~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~--~~~g~ 75 (153)
-+.+++.++.++|.++-+.. .... .+.-+.+|+||...+ .+..... -+...| ...|-.|..+. .+.++
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhh
Confidence 46789999999999985542 1111 244557888877544 3333333 111112 11222222221 23333
Q ss_pred ccccc---------------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChhhHHHHH
Q 039275 76 IRLAR---------------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH----TDEVTMVVVL 124 (153)
Q Consensus 76 ~~~a~---------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~t~~~li 124 (153)
+.+|. |-.-=+..+..+...|+++++..++++|...=++ .+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 33333 3334456678889999999999999988765444 8888998866
Q ss_pred HHhcCCC
Q 039275 125 AASSGPG 131 (153)
Q Consensus 125 ~~~~~~g 131 (153)
-.++++-
T Consensus 175 lmlsrSY 181 (549)
T PF07079_consen 175 LMLSRSY 181 (549)
T ss_pred HHHhHHH
Confidence 6666543
No 184
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.00 E-value=12 Score=29.90 Aligned_cols=112 Identities=14% Similarity=0.038 Sum_probs=56.3
Q ss_pred hcCChhHHHHHHHHhHHcCCCc-cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHH
Q 039275 7 QAGRFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVS 84 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 84 (153)
+..-++.|..+|.+.++.+..+ ++.+++.+|.-+|. ++.+-|.++ +.|++.-. + ++.-
T Consensus 378 R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--------------d-----~p~y 437 (656)
T KOG1914|consen 378 RAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--------------D-----SPEY 437 (656)
T ss_pred HhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--------------C-----ChHH
Confidence 3444555566666665555555 55555555555442 333334444 33332100 0 2222
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHhcCCCccccchh
Q 039275 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-..-+.-+...|+-..+.-+|+.....++.|| ..+|..+|+.=..-|++..+..
T Consensus 438 v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 438 VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 23445555566666666666666665555443 3456666666555565554433
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.88 E-value=2 Score=33.17 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|+.+-..|.+.|++++|...|++-.+. .|+. .+|..+-.+|.++|++++|.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666777777777777777777777765543 3543 346777777777777777766
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.48 E-value=14 Score=31.14 Aligned_cols=72 Identities=19% Similarity=0.098 Sum_probs=32.5
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+.|+.++|..+++....-+.. |..|..++-..|-..+..+++..+ ++. .-|+......+..+|.|.+++.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433332 455555555555555555555555 222 22333333334444444444433
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=86.98 E-value=6.7 Score=28.17 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC-ChhhHHHHHHHhcCCCccccchhHHHHHHHHHHHh
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLG-VHT-DEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~li~~y 150 (153)
.+--+-..|...|++++|...|+.+...- -.| ....+-.+...+...|+.+.|.. +|..+++-|
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~---~~~~vi~~y 247 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKA---VYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHH---HHHHHHHHC
Confidence 33456677889999999999999998542 111 22233444556778899999988 666666655
No 188
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.98 E-value=5.6 Score=28.98 Aligned_cols=58 Identities=5% Similarity=0.006 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..+--.+|..+++.+++.+-++++..-... +..-|..-|..+|+...+.|+..-.+.
T Consensus 201 ~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 201 TRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred ChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 3344445555556666666555555554432 334455556666665555555544433
No 189
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.92 E-value=6.1 Score=29.96 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=69.4
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh-cchhhHHHHH-HHHHhcCCccccc--
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD-LSSYSLSSKT-SRYAHSGRIRLAR-- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~-~~~~~~~~ll-~~~~~~g~~~~a~-- 80 (153)
...+++.+-.++.+++.=.--|..-| -+-.+.+..|++.+|+++ -++.+ .|..+|-+++ ++|.+++.++-|-
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 34567777777776665333333333 345677778888888888 33343 5667776654 7778888877665
Q ss_pred --------hHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 81 --------DPVSCKAMI-SGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 81 --------~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
+..+.-.+| .-|.+.+++.-|-+.|+++......|
T Consensus 451 ~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 451 MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 333333334 66788999999999999988654333
No 190
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.89 E-value=9.5 Score=27.47 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
|...|.-+-..|...|++++|--.++++.-
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 677777777777777777777777777764
No 191
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.86 E-value=2.2 Score=31.05 Aligned_cols=57 Identities=9% Similarity=0.075 Sum_probs=41.8
Q ss_pred cCCCccHHHHHHHHHHhcCCCchHHHHHH------hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 24 LGVHTDEVTMVVVLTASSGPGAWILAKEL------QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 24 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.|-.++..+..++|+.+++.++|..-.++ ..+...|...|..+|+...+.|+..-..
T Consensus 196 ~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ 258 (292)
T PF13929_consen 196 FSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMR 258 (292)
T ss_pred cccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHH
Confidence 35667788888888888888888888888 2233446677888888888888764433
No 192
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.54 E-value=2 Score=33.35 Aligned_cols=94 Identities=18% Similarity=0.141 Sum_probs=52.0
Q ss_pred hhcCChhHHHHHHH--HhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc---
Q 039275 6 SQAGRFNEALEPFG--KLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
.-.++++++.++.. ++. ..++ ....+.++.-+-+.|-.+.|+++-... ..-.+...+.|+++.|.
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~-------~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIP--KDQGQSIARFLEKKGYPELALQFVTDP-------DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-H-------HHHHHHHHHCT-HHHHHHHC
T ss_pred HHcCChhhhhhhhhhhhhc-ccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh-------HHHhHHHHhcCCHHHHHHHH
Confidence 34567777666664 111 1122 445778888888889899888881111 11122334566666666
Q ss_pred ----hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 ----DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 ----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+...|..|-....+.|+++-|++.|++..
T Consensus 342 ~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 342 KELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 56677777777777777777777776654
No 193
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.39 E-value=6.9 Score=25.35 Aligned_cols=124 Identities=11% Similarity=0.057 Sum_probs=74.3
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH--hhhhhcchhh---HHHHHHHHHhcCCccccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDLSSYS---LSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~---~~~ll~~~~~~g~~~~a~ 80 (153)
.-.|.+++..++..+.... .+..-||.+|--....-+.+-..+. .-|---|... .-.++..|.+.+-.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~---- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL---- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch----
Confidence 3467888888888887553 3455555555444444444443333 2222222222 23467777777764
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
....+.-+..+...|+-|+-.++..++.+. -+|+......+-+||.+.|+..++.+
T Consensus 86 -se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 86 -SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred -HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 346677888999999999999999998863 37888888899999999999988776
No 194
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.38 E-value=8.5 Score=30.41 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=64.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+.+..|+++.|+..|-+-..-. ++|.+-|.-=..++++.|++++|.+= ...+.|+.
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w-------------------- 69 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW-------------------- 69 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch--------------------
Confidence 3466788888888887665532 33666677777777888888777666 34445543
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
...|+-.=.++.-.|++++|..-|.+=.+.- .-+...++.+.++.
T Consensus 70 -~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 70 -AKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred -hhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 2456666666777788888888877644321 22455566666665
No 195
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=86.33 E-value=6.7 Score=28.81 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 81 DPVSCKAMISGYSQA-----GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 81 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
|..+|-+++..|..+ +.++-....++.|++-|+..|..+|..||+.+=+..
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk 121 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK 121 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc
Confidence 778888888888654 888888999999999999999999999999987654
No 196
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.32 E-value=1.8 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=25.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 37 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 37 (153)
.+|.+.|+.+.|.+++++....|-.|-..--..|+
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL 41 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVIEEGDEAQRQEARALL 41 (44)
T ss_pred HHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57999999999999999998765544443333333
No 197
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.30 E-value=2.1 Score=33.16 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 36 VLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
-++...+.|+++.|.++-.... +...|..|-+...+.|+++-|. ...-|..|+--|.-.|+.++-.++-+.-...
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HhHHHHhcCCHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 3555677888888888822222 5568889999999999988888 6667788888888888887777777666655
Q ss_pred CCCCChhhHHHHHHHhcCCCccccchh
Q 039275 112 GVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 112 g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
| -++..+.++.-.|++++..+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHH
Confidence 5 35555555555666665554
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.74 E-value=7.2 Score=32.77 Aligned_cols=72 Identities=25% Similarity=0.225 Sum_probs=43.2
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHh--cCCCchHHHHHH---hhhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS--SGPGAWILAKEL---QIELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~---~~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
...+++++|..-..++.+. .|+ ..|..++.++ .+.|+.++|..+ ..+.++ |..|-..+-..|...+..++|
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 4567888888888877553 233 3455556655 567888888877 333333 344455555555555555554
Q ss_pred c
Q 039275 80 R 80 (153)
Q Consensus 80 ~ 80 (153)
.
T Consensus 97 ~ 97 (932)
T KOG2053|consen 97 V 97 (932)
T ss_pred H
Confidence 4
No 199
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=85.36 E-value=6.8 Score=30.29 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=59.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHH--------------------------
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKEL-------------------------- 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~-------------------------- 52 (153)
+.+...|+.++|+..|++-... .|+. ..|..++ .+.|+++...++
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K 314 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK 314 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence 4678899999999999877653 2322 2333333 233444433333
Q ss_pred ---------hhhhhcchhhHHHHH---HHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHH
Q 039275 53 ---------QIELDLSSYSLSSKT---SRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEP 104 (153)
Q Consensus 53 ---------~~~~~~~~~~~~~ll---~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~ 104 (153)
...+..+......+| ..+...++.++|. +..+|.-|+..|...|++.+|.-.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 222333333333333 4455666666666 888999999999999999998743
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.31 E-value=11 Score=26.68 Aligned_cols=131 Identities=11% Similarity=0.057 Sum_probs=79.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccH-HHH---HHHHHHhcCCCchHHHHHH---hhhhhcch--hhHHHHHHHHH----
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDE-VTM---VVVLTASSGPGAWILAKEL---QIELDLSS--YSLSSKTSRYA---- 71 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~---~~ll~~~~~~~~~~~a~~~---~~~~~~~~--~~~~~ll~~~~---- 71 (153)
+.+.|++++|++.|+.+...- |+. ... -.+..++.+.+++++|... .-...|+. .-+.-.+.+.+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 456799999999999998742 332 222 2344677889999998877 11111211 12222223322
Q ss_pred ------------------------------------hcCCccccc-------h---HHHHHHHHHHHHhcCChHHHHHHH
Q 039275 72 ------------------------------------HSGRIRLAR-------D---PVSCKAMISGYSQAGRFNEALEPF 105 (153)
Q Consensus 72 ------------------------------------~~g~~~~a~-------~---~~~~~~li~~~~~~g~~~~a~~~~ 105 (153)
.+.-..+|. + ..-+ .+-.-|.+.|.+.-|..-|
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~-~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL-SVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCchHHHHHHH
Confidence 111111111 1 1111 3335578889999999999
Q ss_pred HHHHHc--CCCCChhhHHHHHHHhcCCCccccchh
Q 039275 106 GKLESL--GVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 106 ~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.+.+. +.+........++.++.++|..++|.+
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 988865 344466667788899999999998876
No 201
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.14 E-value=7.1 Score=28.63 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC--CCc----hHHHHHH----hhhh----hcchhhHHHHHHHHHhcCCc
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSG--PGA----WILAKEL----QIEL----DLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~~----~~~a~~~----~~~~----~~~~~~~~~ll~~~~~~g~~ 76 (153)
+++.+++++.|++.|+.-+..+|-+....... ..+ ...+.++ +..+ .++.+.+..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56778889999999999999888764444333 222 3334444 1111 3455666666543 22222
Q ss_pred cccc--hHHHHHHHHH----------------HHHh-cCC--hHHHHHHHHHHHHcCCCCChhhHHHH
Q 039275 77 RLAR--DPVSCKAMIS----------------GYSQ-AGR--FNEALEPFGKLESLGVHTDEVTMVVV 123 (153)
Q Consensus 77 ~~a~--~~~~~~~li~----------------~~~~-~g~--~~~a~~~~~~m~~~g~~p~~~t~~~l 123 (153)
+.-. -..+|+.|-. +++. ..+ +.++.++++.+++.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2221 1222222222 2222 112 34788999999999998877766544
No 202
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=85.00 E-value=4.7 Score=31.70 Aligned_cols=49 Identities=18% Similarity=0.067 Sum_probs=39.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..-+.|+.++|+++|++|.+.. ..-+.-+...|++++...+.+.++..+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 3457799999999999997653 222345777899999999999999999
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.66 E-value=2.8 Score=34.18 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=46.8
Q ss_pred HHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 35 VVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
+++..-...++|++|..+ ++..+.-..+|-.--..++...++++|. .+|-++|+-.+|.++++++-...
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAq---------kAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQ---------KAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHH---------HHHHHhcchHHHHHHHHHhhhhh
Confidence 445555667788888888 3333322333444556667777777766 67789999999999999987553
No 204
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.54 E-value=11 Score=31.70 Aligned_cols=107 Identities=16% Similarity=0.110 Sum_probs=68.3
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CC-CccHHHHHHHHHHhcCCCchHHHHHH---------hhhhh--c-chhhHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GV-HTDEVTMVVVLTASSGPGAWILAKEL---------QIELD--L-SSYSLSSK 66 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ll~~~~~~~~~~~a~~~---------~~~~~--~-~~~~~~~l 66 (153)
.+...|++++|...+++.... |- .+....+..+-..+...|++++|... ..+.. + ....+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 356789999999999887542 11 11223444555567788999998887 11111 1 12233444
Q ss_pred HHHHHhcCCccccc-----------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 67 TSRYAHSGRIRLAR-----------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 67 l~~~~~~g~~~~a~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
-..+...|++++|. ....+..+-..+...|+.++|.+.+.+...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55667778888886 123344455677889999999999888753
No 205
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.44 E-value=6 Score=26.12 Aligned_cols=57 Identities=5% Similarity=-0.034 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..-|-.|=..+-..|++.+|.+.|....... .-|...+-.+-.++...|+.+.|++
T Consensus 68 ~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 68 SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 34556678888889999999999999987655 2366667777888899999999888
No 206
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=13 Score=26.81 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=35.4
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.|++++|.+.++.+.+.. +.|.+++..=+-..-..|.--+|.+- -..+.-|...|.-+-+.|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 455566666666655554 44455554333333333322222222 3334445555666666666666666655
No 207
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=84.38 E-value=2.1 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 039275 85 CKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~ 106 (153)
...+-..+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3456678889999999998875
No 208
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.26 E-value=14 Score=26.98 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=73.8
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHh-----hhhhcchhhHHHHH---HHHHhcCCcc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----IELDLSSYSLSSKT---SRYAHSGRIR 77 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~-----~~~~~~~~~~~~ll---~~~~~~g~~~ 77 (153)
..-|++.-..+++++..+..-+.++.....+...-.+.|+.+.|.... ..-+.|...++.++ .++...|.-+
T Consensus 188 lG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn 267 (366)
T KOG2796|consen 188 LGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN 267 (366)
T ss_pred hcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc
Confidence 345566777778888877766777888888888888889988887772 33344444554443 2333333333
Q ss_pred ccc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 039275 78 LAR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVV 123 (153)
Q Consensus 78 ~a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 123 (153)
.|. ++..-|+---.....|+...|.+.++.|+.. -|...+-+++
T Consensus 268 ~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 268 FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 333 4445555555556678999999999999865 3544444433
No 209
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=84.21 E-value=3 Score=30.53 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
+..-||.-|....+.||+++|+++++|-++.|+.-=..+|..-++
T Consensus 256 Te~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 256 TESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 556689999999999999999999999999998766666655443
No 210
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=83.99 E-value=4.9 Score=27.43 Aligned_cols=49 Identities=20% Similarity=0.132 Sum_probs=33.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcC--CCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.+.|++++|++.|+.+...- -+--....-.+..++.+.|++++|...
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~ 64 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA 64 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4578899999999999997651 111223334566788899999888877
No 211
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=83.92 E-value=2.2 Score=23.30 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 86 KAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
-.+|.|+...|++++|.++.+++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3678999999999999999988864
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.81 E-value=5.5 Score=32.84 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
||-..|---+.+++..++|++-+++...-++ ..-|--.+.++.+.|+.++|.
T Consensus 713 pdKr~~wLk~~aLa~~~kweeLekfAkskks-PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 713 PDKRLWWLKLTALADIKKWEELEKFAKSKKS-PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred cchhhHHHHHHHHHhhhhHHHHHHHHhccCC-CCCchhHHHHHHhcccHHHHh
Confidence 4444444444455555555554444111111 233444444444555544444
No 213
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=83.77 E-value=3.1 Score=19.07 Aligned_cols=29 Identities=28% Similarity=0.372 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
.+|..+-..+...|++++|.+.|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999988753
No 214
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.98 E-value=1.9 Score=31.93 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
=++++++.+...=.+.|+-||..+++.+|+.+.+.+++.+|-.+
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~v 157 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASV 157 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHH
Confidence 35666666666666777777777777777777777777776666
No 215
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.76 E-value=6.5 Score=27.11 Aligned_cols=67 Identities=19% Similarity=0.060 Sum_probs=39.3
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH--------hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--------QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
++|..-|-++...+..-++...-.+-+-|. ..+.+.+..+ ..+-.+|...+.+|...|-+.++++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 567778888887776655555555444444 5555556555 222245555566666666666555543
No 216
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.46 E-value=23 Score=28.13 Aligned_cols=131 Identities=8% Similarity=-0.013 Sum_probs=71.3
Q ss_pred hcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhc----CCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS----GPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
...+++.+.++|..... =++....||..+=-.++ +..++..|.++ .-|..|-..+|-..|..=.+.++++..
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 34567777788877766 35666667765444333 23456666666 556666666666666666666666666
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +..+|...-..--..|+.|.|..+|.--.+.. +.--...|-+-|+.=...|.++.|..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 6 44444444444445555555555555544321 11223333444444444444444444
No 217
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.15 E-value=7.2 Score=26.18 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHT--DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+..+-..|++.|+.++|.+.|.++.+.-..| -...+-.+|..+.-.+++..+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~ 94 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEK 94 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 445555555566666666666666555443333 22334444555555555554444
No 218
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=82.05 E-value=1.7 Score=20.49 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEAL 102 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~ 102 (153)
+...|+.+-..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3455566666666666666554
No 219
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.87 E-value=4.4 Score=20.53 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5578999999999999999998655
No 220
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.53 E-value=21 Score=27.05 Aligned_cols=136 Identities=18% Similarity=0.009 Sum_probs=73.6
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhh--------hhhcchhhHHHHHHHHHhcCCcccc
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI--------ELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|++.+|-..++++.+. ++.|.-.++..=++++-.|+.+....... +.+...++-..+.-++..+|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 56677777777777664 66666666666667776676555444411 2222233334444555677888877
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHhcCCCccccchh--HHHH
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL---GVHTDEVTMVVVLAASSGPGALDFGKS--NIFL 142 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~ 142 (153)
+ |.=.-.++-..+-..|++.++.+++++-... +.-.-.+-|.-.--.+...+.++.|.+ |.++
T Consensus 195 Ek~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 195 EKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 7 3333345555566677777777666553321 111111123333333444466666666 4444
Q ss_pred HH
Q 039275 143 TT 144 (153)
Q Consensus 143 ~~ 144 (153)
|.
T Consensus 275 ~k 276 (491)
T KOG2610|consen 275 WK 276 (491)
T ss_pred HH
Confidence 43
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.43 E-value=3.1 Score=34.64 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=70.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchh--hHHHHHHHHHhcCCccccc--
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY--SLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~-- 80 (153)
|.+..+..+....++.+.+.|+. +...-..||++|.+.++.+.-.++-.+.+.... -.-..++-+.+.+-.++|.
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 33334444444555555566653 445556778888888888877777222221111 1234455555555555555
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-------------CChhhHHHHHHHhcCCCccccch
Q 039275 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH-------------TDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 81 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
-..+=+.+---+-..+++++|.++++.|.-...- .-..|...++..|...++.....
T Consensus 486 A~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~~t~~~~~~~~~ 558 (933)
T KOG2114|consen 486 ATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIELITELNSQGKGK 558 (933)
T ss_pred HHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhhcCCCCCCc
Confidence 1112234444456678888888888776422111 12334566666666665444433
No 222
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.11 E-value=14 Score=24.80 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=57.2
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCcc--HHHHHHHHHHhcCCCchHHHHHH----hhhhh--cchhhHHHHHHHHHhcC
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLTASSGPGAWILAKEL----QIELD--LSSYSLSSKTSRYAHSG 74 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~----~~~~~--~~~~~~~~ll~~~~~~g 74 (153)
+.|++.|+.++|++.|.+++.....|. ...+-.+|....-.+++..+... +.-+. .|...-|
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n---------- 113 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN---------- 113 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH----------
Confidence 568999999999999999988765554 35556777777777888777766 11111 1111111
Q ss_pred CccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 75 ~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
....|..|.. ...+++.+|-+.|-+..
T Consensus 114 ------rlk~~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 114 ------RLKVYEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred ------HHHHHHHHHH--HHhchHHHHHHHHHccC
Confidence 1244544433 34578888888887765
No 223
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.98 E-value=2.1 Score=19.31 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=19.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
+-..+.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 445677889999999999998865
No 224
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=80.87 E-value=20 Score=29.25 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=57.2
Q ss_pred CccH--HHHHHHHHHhcCCCchHHHHHH---hhhhhcchh-hHHHHHHHHHhcCCccccc------------hHHHHHHH
Q 039275 27 HTDE--VTMVVVLTASSGPGAWILAKEL---QIELDLSSY-SLSSKTSRYAHSGRIRLAR------------DPVSCKAM 88 (153)
Q Consensus 27 ~p~~--~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~ll~~~~~~g~~~~a~------------~~~~~~~l 88 (153)
+|.+ +|+--+...+-+.|+++.|..+ .-+..|+.+ .|-.-.+.+...|++++|. |...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4444 3444566777888999999988 333444443 3444457888899988887 33333233
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCC
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGV 113 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~ 113 (153)
..=..+++++++|.++....-+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 3444677899999988888877775
No 225
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=80.07 E-value=8.9 Score=24.54 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 19 GKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 19 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+.+....+.|++.+....|.+|-+.+++..|..+
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRi 106 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRI 106 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHH
Confidence 3344456777777777777777777777777776
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.89 E-value=28 Score=27.49 Aligned_cols=122 Identities=16% Similarity=0.037 Sum_probs=74.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHHHHHH-hhhhh--cchhhH-HHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILAKEL-QIELD--LSSYSL-SSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~--~~~~~~-~~ll~~~~~~g~~~~ 78 (153)
+-.+..-++.|..+|-+.++.| +.|++.+++.+|.-++. |+...|..+ +.|+. ||.-.| +..+..+.+.++-+.
T Consensus 406 ~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~n 484 (660)
T COG5107 406 YVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEEN 484 (660)
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHH
Confidence 3345556778888888888888 77888888888887664 444445555 45542 343333 445555555565555
Q ss_pred cc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 79 AR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 79 a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
|. -...|..+|.=-..-|+...|..+=+.|.. +-|.+.+...+.+-|.
T Consensus 485 araLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 485 ARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 54 246677777777777777666666555543 2455555555555444
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.02 E-value=9.5 Score=31.55 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=72.9
Q ss_pred CCCccHHHHHHHHHHhcCCCchHHHHHHhhhhh-cchhhHHHHHHHHHhcCCccccc-------hHHHHHHHHHHHHhcC
Q 039275 25 GVHTDEVTMVVVLTASSGPGAWILAKELQIELD-LSSYSLSSKTSRYAHSGRIRLAR-------DPVSCKAMISGYSQAG 96 (153)
Q Consensus 25 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~li~~~~~~g 96 (153)
|....--+.+-.+.-+...|+-..|.++++..+ ||...|---+.+++..+++++-+ .+.-|.-....|.+.|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQG 758 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcc
Confidence 333333344444555577888889999966664 77777777788888888877766 5777888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 97 RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 97 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.++|.+++-.... +.--..+|.+.|++.+|.+
T Consensus 759 n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAAD 791 (829)
T ss_pred cHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHH
Confidence 88888887765431 1145667777777777766
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=78.78 E-value=7.8 Score=25.11 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=20.4
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..+.|+-++..++...+.+ +-+|++...-.+-+||.+.|+..++.++
T Consensus 96 lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~el 142 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANEL 142 (161)
T ss_dssp HHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHH
Confidence 3444444444444444443 2334555555555566666655555555
No 229
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=78.57 E-value=6.5 Score=24.05 Aligned_cols=50 Identities=16% Similarity=0.088 Sum_probs=41.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...+..-.|.++++.+++.+..++..|.=..|+.+.+.|.+.+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45666667778888999999999988888999988889999988887654
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=77.98 E-value=19 Score=24.53 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=72.6
Q ss_pred hhhHhhcCChhHHHHHHHHhHHc-CCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
..++.+.|++++|...|+++.+. .-.|. .-+...+.+.+.....+..... ......-...+..+|+-|=.+.-..
T Consensus 49 a~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 49 AYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 45788899999999999998654 22222 2233333333221112111000 1111112235566666666666666
Q ss_pred ccc----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHhcCCCccccch
Q 039275 78 LAR----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 78 ~a~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
+|. ...-+ .+-..|.+.|.+..|..-++.+.+.= ..-.......++.++-++|..+.+.
T Consensus 128 ~A~~~l~~l~~~la~~e~-~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 128 EAKKRLAELRNRLAEHEL-YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 655 11112 24466889999999999999988662 2223345677888888888877443
No 231
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.93 E-value=5.7 Score=17.92 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+=..+...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667778899999999999999987753
No 232
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.73 E-value=21 Score=25.75 Aligned_cols=19 Identities=5% Similarity=-0.389 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhcCCCchHH
Q 039275 30 EVTMVVVLTASSGPGAWIL 48 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~ 48 (153)
..-|+.....|...|.++.
T Consensus 91 vdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHHhCCcch
Confidence 3445555555555555443
No 233
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.72 E-value=17 Score=30.90 Aligned_cols=98 Identities=13% Similarity=0.054 Sum_probs=58.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-------------hhhhhcchhhHHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-------------QIELDLSSYSLSSKTSRY 70 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~ll~~~ 70 (153)
-|..-|+.+.|.+-.+.+++ -.+|..|-..|.+..+++-|+-. +...+-+..+-..+.-.-
T Consensus 737 fyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 45667888888777766655 35677777777777776665544 111111112222222223
Q ss_pred HhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 71 AHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 71 ~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.+.|.+++|. ...-|+.|-..|-..|.|++|+++-+.
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh
Confidence 4556666666 445566666777777888887776654
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=76.41 E-value=35 Score=26.77 Aligned_cols=108 Identities=14% Similarity=-0.060 Sum_probs=60.0
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHH-HhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHH
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLT-ASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKA 87 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 87 (153)
...+.|.++++.+.+. -|+...|...-. .+...|++++|.+...........|..+ ...++-=
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql--------------~~l~~~E 310 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL--------------HHLCYFE 310 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH--------------HHHHHHH
Confidence 4556666666666553 455555544333 2344466666666622111111222221 3344445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh-cCCCcc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS-SGPGAL 133 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~-~~~g~~ 133 (153)
+...+....+|++|.+.|..+.+.. +.+..+|.-+.-+| ...|+.
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccc
Confidence 5666788889999999999999754 44555565555533 334444
No 235
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.28 E-value=7.1 Score=22.62 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=35.7
Q ss_pred hcCChhHHHHHHHHhHHcCCCc-cH-HHHHHHHHHhcCCCchHHHHHH
Q 039275 7 QAGRFNEALEPFGKLESLGVHT-DE-VTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p-~~-~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
...+.++|+..|....+.--.| +. .++..++.+++..|.++++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678889999998886653332 22 5777889999999999998887
No 236
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=76.13 E-value=21 Score=30.86 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--hcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAA--SSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~ 138 (153)
|...|..+..+|.+.|+..-|.++|.+.-. ++|+. +|.....+ -|..|.+.++-.
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHH
Confidence 888999999999999999999999976543 45643 34444443 344566655554
No 237
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=76.02 E-value=0.66 Score=26.88 Aligned_cols=30 Identities=23% Similarity=0.028 Sum_probs=13.2
Q ss_pred hHHHHHHhhhhhcchhhHHHHHHHHHhcCC
Q 039275 46 WILAKELQIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 46 ~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
+++|...+..+..+..+|-..|++|++.|.
T Consensus 10 ~eeA~~~QYeLsk~~~vyRvFiNgYar~g~ 39 (88)
T PF11491_consen 10 PEEAMVKQYELSKNEAVYRVFINGYARNGF 39 (88)
T ss_dssp TTTTHHHHHTTTTTTTB------TTSS--E
T ss_pred HHHHHHHHHHhhcccceeeeeecccccceE
Confidence 455666666666666666666666666555
No 238
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.75 E-value=19 Score=23.45 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=66.4
Q ss_pred HHcCCCccH--HHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCC-h
Q 039275 22 ESLGVHTDE--VTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGR-F 98 (153)
Q Consensus 22 ~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~-~ 98 (153)
.+.+..++. ...|.+|.-.+.-+++.....+-..+ ..+..-.-.|.. +...|++++.+..+..- -
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l--------~~l~~~~~~~~~----~~ssf~~if~SlsnSsSaK 96 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL--------HFLNTDNIIGWL----DNSSFHIIFKSLSNSSSAK 96 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH--------HHhhHHHHhhhc----ccchHHHHHHHHccChHHH
Confidence 444566665 34567777777777777666662222 111111111222 67899999999976666 3
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
--+..+|.-|++.+.+++..-|..+|++|.+....
T Consensus 97 ~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 97 LTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 45678888888888999999999999999886433
No 239
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.74 E-value=2.2 Score=32.89 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=41.3
Q ss_pred HhhcCChhHHHHHHHHhHHcC---CCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLG---VHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+|+.|+.+..+++|+...+-| +..-..+|..+=++|.-.+++++|+++
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 689999999999999999877 444567788888899999999999998
No 240
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=75.68 E-value=19 Score=23.37 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.6
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCcc---HHHHHHHHHHhcCCCchHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTD---EVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..+.|++++|++.|+.+..+ ++.. ...---++.++.+.+++++|...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~ 69 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAA 69 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 45789999999999999765 2222 23344567899999999998887
No 241
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.12 E-value=3.9 Score=26.29 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=26.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 92 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
.-..|.-..|..+|..|.+.|-.|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 3445666789999999999998888 477777654
No 242
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=75.04 E-value=37 Score=26.38 Aligned_cols=120 Identities=14% Similarity=0.070 Sum_probs=68.7
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHH-------------HHhcCCCchHHHHHH--------hhhhhcchhhHHHH
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVL-------------TASSGPGAWILAKEL--------QIELDLSSYSLSSK 66 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-------------~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~l 66 (153)
+++.+.|+..|.+-.+ ..|+...-.++- +-..+.|++..|.+. .+..+++...|...
T Consensus 216 ~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 4556667777765544 234433322221 334567778877777 44556666777777
Q ss_pred HHHHHhcCCccccc----------hHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHhcC
Q 039275 67 TSRYAHSGRIRLAR----------DPVSCKAMISGY--SQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLAASSG 129 (153)
Q Consensus 67 l~~~~~~g~~~~a~----------~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~ 129 (153)
-.+..+.|++++|. ....+.-+..+- ...++|++|.+-|+.-.+..- .-+..|..-...++-+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 78888999999998 333333333333 344777888777766543322 2234444444444433
No 243
>PLN02789 farnesyltranstransferase
Probab=74.70 E-value=32 Score=25.51 Aligned_cols=122 Identities=9% Similarity=-0.050 Sum_probs=72.4
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHH-HHHHHHHHhcCCC-chHHHHHH-hh---hhhcchhhHHHHHHHHHhcCCc--
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEV-TMVVVLTASSGPG-AWILAKEL-QI---ELDLSSYSLSSKTSRYAHSGRI-- 76 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~-~~---~~~~~~~~~~~ll~~~~~~g~~-- 76 (153)
+...+..++|+.+.++..+. .|+.. .|+.--..+.+.+ .++++.++ .. .-+.+..+|+..--.+.+.|..
T Consensus 47 l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence 44566778888888877663 33332 3332223344445 56777777 22 1233444566544344444542
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
+++. +..+|+..-..+.+.|+++++.+.++++.+...+ +...|+.-...+.+
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 2222 7888999999999999999999999999876533 33344444444433
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=74.05 E-value=14 Score=28.87 Aligned_cols=73 Identities=11% Similarity=0.153 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHH--HhcCChHHHHHHHHHHHHc--CCCC------------ChhhHHHHHHHhcCCCccccchh------
Q 039275 81 DPVSCKAMISGY--SQAGRFNEALEPFGKLESL--GVHT------------DEVTMVVVLAASSGPGALDFGKS------ 138 (153)
Q Consensus 81 ~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--g~~p------------~~~t~~~li~~~~~~g~~~~a~~------ 138 (153)
....|-.+..++ -+.+++++|.+.+...... +-+| |..-=+..+.++.+.|.+++++.
T Consensus 76 ~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 76 GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 455666676654 5788999999999888755 4333 22223456678899999999998
Q ss_pred ----------HHHHHHHHHHHhhcC
Q 039275 139 ----------NIFLTTAIIEMYAKM 153 (153)
Q Consensus 139 ----------~~~~~~~li~~y~k~ 153 (153)
+..+||.++-+|+|+
T Consensus 156 ~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 156 ERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHhhhhhcccHHHHHHHHHHHhHH
Confidence 888999988888774
No 245
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.06 E-value=7.6 Score=17.57 Aligned_cols=27 Identities=33% Similarity=0.372 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
+|..+-..+...|++++|.+.|++-.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777888999999999999988764
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=72.99 E-value=17 Score=24.22 Aligned_cols=46 Identities=22% Similarity=0.162 Sum_probs=27.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC-CCchHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG-PGAWILAKEL 52 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~ 52 (153)
+...|++++|..+|..+--. .|...-|-.-|.++.+ .+.+++|..+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~ 93 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDL 93 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888877653 2333334444444443 3567777666
No 247
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=72.83 E-value=21 Score=29.48 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCccccc
Q 039275 65 SKTSRYAHSGRIRLAR 80 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~ 80 (153)
+-.+++...|+.++|.
T Consensus 708 aAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAI 723 (1081)
T ss_pred HHHHHhhcccchhhhh
Confidence 4456666777777776
No 248
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=72.56 E-value=7.4 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=36.7
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
++...+.+.+-.|.++++++++.+..++..|.-..|+.+.+.|-+.
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 4555666777789999999999888788888878888888888655
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=71.73 E-value=18 Score=26.33 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-..++..++..+...|+++.+.+.++++...- .-++..|..++.+|.+.|+...|.+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~ 208 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIR 208 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHH
Confidence 35778899999999999999999999998653 3489999999999999999999988
No 250
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.71 E-value=12 Score=19.69 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=23.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLT 38 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 38 (153)
++.+.|++++|.+..+.+.+ +.|+......|-.
T Consensus 10 g~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 10 GHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 67889999999999998887 4777766655544
No 251
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=70.74 E-value=45 Score=27.24 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh----------HHHHHHHHHHHhhc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS----------NIFLTTAIIEMYAK 152 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~----------~~~~~~~li~~y~k 152 (153)
....+.-.|+++.|.+++.+ ..+...|++.+...+..+.-++-.+.... .+--+..||..|.|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT------------------------HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH
Confidence 34666778999999999888 44567888888888887776655554322 22456777777765
No 252
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=70.65 E-value=43 Score=26.53 Aligned_cols=107 Identities=14% Similarity=0.033 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-----hhh-hhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-----QIE-LDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISG 91 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-----~~~-~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~ 91 (153)
...|...|+..-+..-++.|..+ +.+ ..|+..++++++..++..... .|. ++.--+-.+..
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~-ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRA-TAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcc-hHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45677788888888888888888 334 568899999999988865543 333 33333556777
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHhcCCCccccchh
Q 039275 92 YSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.+.|+-+.|..+|+.-... +.-+ ..+|-.+|+.=..-|+...+..
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 78889999999999844321 1112 3467788877777777754433
No 253
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.31 E-value=19 Score=25.47 Aligned_cols=67 Identities=13% Similarity=0.031 Sum_probs=47.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhc----chhhHHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDL----SSYSLSSKTSR 69 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~~~~~~~ll~~ 69 (153)
|+.+.+.+.+++++.+.+.-.+. -+.|..+-..++.-++-.|+|+.|..- -..+.| -..+|..+|.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 56788899999999998776654 234555556788999999999998876 333333 34566666644
No 254
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=68.59 E-value=5.8 Score=21.85 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=19.1
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCChh
Q 039275 94 QAGRFNEALEPFGKLESLG-VHTDEV 118 (153)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~g-~~p~~~ 118 (153)
..=+++.|...|.+++..| +.|+++
T Consensus 37 ~~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 37 NNWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred cCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 3558899999999999765 555553
No 255
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=68.32 E-value=7.8 Score=23.97 Aligned_cols=51 Identities=18% Similarity=0.101 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
..++..+...+..-.|.++++.|+..+.+++..|.=.-|+.+.+.|.+.+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 456777778888999999999999999888888887788888888876653
No 256
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=67.79 E-value=53 Score=27.53 Aligned_cols=102 Identities=13% Similarity=0.020 Sum_probs=59.7
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHh---cCCCchHHHHHH---hhhhhc-----chhhHHHHHHHHHhcC
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS---SGPGAWILAKEL---QIELDL-----SSYSLSSKTSRYAHSG 74 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~---~~~~~~-----~~~~~~~ll~~~~~~g 74 (153)
-+.+..++++.-+..-...++..++.++..+..++ ...++.+++.-+ ...+.| |.+.+-.++--+.+.+
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888988998888877644 445666666222 222222 2222223333334444
Q ss_pred CccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 75 ~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.+.. |...|..+--++.+.|+++.+-+.|++-.
T Consensus 318 ~~qn--d~ai~d~Lt~al~~~g~f~~lae~fE~~~ 350 (799)
T KOG4162|consen 318 KFQN--DAAIFDHLTFALSRCGQFEVLAEQFEQAL 350 (799)
T ss_pred hhcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4443 55666666666666666666666665543
No 257
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=67.78 E-value=15 Score=30.42 Aligned_cols=76 Identities=12% Similarity=-0.042 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 61 YSLSSKTSRYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 61 ~~~~~ll~~~~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
..--.+...+.+.|-...|. ....|..+|..|+..|+.++|.++.....+ -.||..-|..+.+..-...-+++|
T Consensus 399 q~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 33345667778888888887 889999999999999999999999888776 368999999999988888888887
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
.+
T Consensus 477 wE 478 (777)
T KOG1128|consen 477 WE 478 (777)
T ss_pred HH
Confidence 77
No 258
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.91 E-value=13 Score=27.17 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHHhcCCCchHHHHHH-------hhhhhcchhhHHHHHHHHHhcCCccccc-------------hHHHHHHHHHHH--
Q 039275 35 VVLTASSGPGAWILAKEL-------QIELDLSSYSLSSKTSRYAHSGRIRLAR-------------DPVSCKAMISGY-- 92 (153)
Q Consensus 35 ~ll~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~ll~~~~~~g~~~~a~-------------~~~~~~~li~~~-- 92 (153)
.=|.+++..++|.++..+ ...++| .+.--.|-.|.|.|++..+. +..-|.++..-|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 345677777777777777 222222 33444555566777666555 333455554444
Q ss_pred ---HhcCChHHHHHHH
Q 039275 93 ---SQAGRFNEALEPF 105 (153)
Q Consensus 93 ---~~~g~~~~a~~~~ 105 (153)
.=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4458888887766
No 259
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=66.44 E-value=56 Score=24.96 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=65.8
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhc---------CCCchHHHHHH-hhhhhcchhhHH-----HHH-----
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASS---------GPGAWILAKEL-QIELDLSSYSLS-----SKT----- 67 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---------~~~~~~~a~~~-~~~~~~~~~~~~-----~ll----- 67 (153)
.|+.++|++++..+....-.+++.||..+-..|- ....+++|.++ +.+..-+...|+ +|+
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 8999999999999766667788877776543331 12246667766 444443332222 122
Q ss_pred ----------------HHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 68 ----------------SRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 68 ----------------~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
...++.|..+...+-=.+.+++.+..-.|+.++|.+..+.|....
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 222333333333344445567778888899999999999998664
No 260
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.28 E-value=39 Score=24.01 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCCChhhHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLES--LGVHTDEVTMVVVLAA 126 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~t~~~li~~ 126 (153)
|..+-..++.-+|-.|++++|..=++-.-. ....+-..+|..+|.+
T Consensus 34 da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 34 DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 333444455555555555555433333221 1233444455555544
No 261
>PF13934 ELYS: Nuclear pore complex assembly
Probab=66.27 E-value=33 Score=24.06 Aligned_cols=28 Identities=21% Similarity=-0.007 Sum_probs=15.0
Q ss_pred HHHHhcCCCchHHHHHHhhhhhcchhhH
Q 039275 36 VLTASSGPGAWILAKELQIELDLSSYSL 63 (153)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 63 (153)
++.++...|+.+.|..+-.-..|...+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~p~l~s~ 141 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVGPPLSSP 141 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcCCCCCCH
Confidence 4555555666666666644444444333
No 262
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=66.25 E-value=13 Score=26.31 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=28.4
Q ss_pred hHhhcCChhHHHHHHHHhH----HcCC-CccHHHHHHHHHHhcCCCchHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLE----SLGV-HTDEVTMVVVLTASSGPGAWILAKE 51 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~----~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~ 51 (153)
.|.+.|++++|.++|+.+. +.|+ .+...+...++.+..+.|+.+....
T Consensus 187 ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4667777777777777662 2343 3344555556666666666665443
No 263
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.10 E-value=53 Score=24.57 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=59.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC-------------ccHHH--------HHHHHH-------HhcCCCchHHHHHH---
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH-------------TDEVT--------MVVVLT-------ASSGPGAWILAKEL--- 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~~--------~~~ll~-------~~~~~~~~~~a~~~--- 52 (153)
+..+.|+...|++...++..+|++ ||+.. -+.++. -..+.++++.|.+-
T Consensus 187 aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 187 AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 346778899999999998877643 22211 112222 23456677777666
Q ss_pred ---hhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 53 ---QIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 53 ---~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
+...+.|.+|...+.-.= -.+++.+.. ...||..++-.||+..-++.|-.++.+=
T Consensus 267 mPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 267 MPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred CCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 222233445443322110 111121111 6788888888899988888888777653
No 264
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.88 E-value=9.5 Score=15.85 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
..|..+-..+...|++++|...|+...+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567777888999999999999987764
No 265
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=65.45 E-value=18 Score=23.47 Aligned_cols=41 Identities=10% Similarity=0.108 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
-++.-+-+.|-+.+...++++|.++|+..+..+|+.++.-.
T Consensus 114 GvL~~ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 114 GVLALAKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 34555677899999999999999999999999999888654
No 266
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.12 E-value=9.9 Score=28.75 Aligned_cols=50 Identities=14% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchhHHH
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKSNIF 141 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~ 141 (153)
..|++.|.+++|...|..-.. +.| +.+++..=-.+|.++.++..|+.|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHH
Confidence 357899999999999987553 346 77888888889999999999888333
No 267
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=64.63 E-value=15 Score=20.63 Aligned_cols=44 Identities=18% Similarity=0.111 Sum_probs=35.5
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 92 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
..-.|+.+.+.+++++....|..|.......+..+.-+.|+.=+
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~ 54 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWE 54 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999888888888877665544
No 268
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=64.43 E-value=23 Score=24.48 Aligned_cols=50 Identities=4% Similarity=-0.087 Sum_probs=41.1
Q ss_pred hhHhhcCChhHHHHHHHHhHH---cCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLES---LGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..|.-..+.++++.++.+..+ .+-.+|+..+.+|.+.+-+.++++.|.-|
T Consensus 148 AtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 148 ATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 356667889999999988754 24478999999999999999999988644
No 269
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=64.39 E-value=84 Score=26.24 Aligned_cols=125 Identities=13% Similarity=-0.037 Sum_probs=80.9
Q ss_pred cCChhHHHHHHHHhHHcCCCccHH-HHHHHHHHhcCCCchHHHHHH-hhh--hhcch-hhHHHHHHHHHhcCCccccc--
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEV-TMVVVLTASSGPGAWILAKEL-QIE--LDLSS-YSLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~-~~~~~ll~~~~~~g~~~~a~-- 80 (153)
.+..++|++++++-.+. -|+-. .|-.+=..+-+.++.+.|.+- ..| ..|+. -.|-.|.+.=-+.|++.+|+
T Consensus 664 ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 46788899998877664 34433 332333344556677777666 333 23444 35666666666777777777
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
+...|-..|..-.+.|..++|..++.+-.+. +.-+...|..-|-...+.++...
T Consensus 742 ldrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 742 LDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 8899999999999999999999888776543 33345556666655555554333
No 270
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.25 E-value=16 Score=24.38 Aligned_cols=50 Identities=12% Similarity=-0.042 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
+++..+...++.-.|.++++.+.+.+..++..|.=..|+.+.+.|.+.+.
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 44455555667788999999999988888888877778888888777654
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.03 E-value=46 Score=24.55 Aligned_cols=107 Identities=16% Similarity=0.113 Sum_probs=66.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcch-----hhHHHHHHHHHhcCCcc-
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSS-----YSLSSKTSRYAHSGRIR- 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~- 77 (153)
.....|++.+|..+|...+...- -+...--.+...+...|+.+.|..+-..++.+. ..-..-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34678899999999998877522 224455567788889999999999833322211 11122233444444433
Q ss_pred --ccc--------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 78 --LAR--------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 78 --~a~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
... |...--.+-..+...|+.+.|.+.+=.+.+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 4444446667788889999998877777644
No 272
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=63.64 E-value=29 Score=20.62 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchhHHHHHHHHHHHhhc
Q 039275 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKSNIFLTTAIIEMYAK 152 (153)
Q Consensus 96 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~li~~y~k 152 (153)
.+.+....+|.+..+ .+|.+.|-..|++++...+.. ...+...|++.|..
T Consensus 39 ~~~~~il~l~l~~L~---d~DsyVYL~aI~~L~~La~~~----p~~vl~~L~~~y~~ 88 (92)
T PF10363_consen 39 IDIPKILDLFLSQLK---DEDSYVYLNAIKGLAALADRH----PDEVLPILLDEYAD 88 (92)
T ss_pred hhHHHHHHHHHHHcC---CCCchHHHHHHHHHHHHHHHC----hHHHHHHHHHHHhC
Confidence 345566666666554 479999999999988877776 45577777777753
No 273
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=62.44 E-value=21 Score=23.09 Aligned_cols=51 Identities=18% Similarity=0.058 Sum_probs=40.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
..++..+...++.-.|.++++++++.+...+-.|.=..++.+...|-+.+-
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~ 74 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRL 74 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEE
Confidence 367777888888899999999999988777777776777888877766543
No 274
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=62.25 E-value=15 Score=27.86 Aligned_cols=70 Identities=13% Similarity=0.030 Sum_probs=42.8
Q ss_pred HhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccccc-----hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 39 ASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLAR-----DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 39 ~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
-|.+.|.+++|.+. ..+ +.| |.+++..-..+|.+...+..|. ....-...+.+|.+.+..-+++.-..+-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35667788888888 333 345 7778888888888888887777 1111223355666665554444444433
No 275
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=61.89 E-value=93 Score=25.89 Aligned_cols=21 Identities=5% Similarity=0.020 Sum_probs=15.3
Q ss_pred hhHHHHHHHhcCCCccccchh
Q 039275 118 VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 118 ~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|.+|-+.|.+.|++++|..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 346777777777777777777
No 276
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.31 E-value=61 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~ 106 (153)
|+..|..++.+|.-.|+...+.+-++
T Consensus 196 d~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 196 DPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred CHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77888888888888887766554333
No 277
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=61.28 E-value=9.4 Score=23.59 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=33.4
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
++...+.+.+-.|.++++.|++.+...+..|.=.-|+.+.+.|-+.
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 4455566667888999999999888888887777788888777544
No 278
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=60.95 E-value=41 Score=21.53 Aligned_cols=56 Identities=21% Similarity=0.083 Sum_probs=43.4
Q ss_pred hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039275 53 QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114 (153)
Q Consensus 53 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 114 (153)
++.+-| -|...|.++...|...+ |.+..+.||.. ...|+++.|+++..-..+.|..
T Consensus 25 Kr~lLP---~Y~p~v~g~L~~g~g~q--d~Vl~~~mvW~-~D~Gd~~~AL~~a~yAi~~~l~ 80 (132)
T PF05944_consen 25 KRELLP---KYLPWVEGVLASGSGAQ--DDVLMTVMVWL-FDVGDFDGALDIAEYAIEHGLP 80 (132)
T ss_pred HHHHHH---hHHHHHHHHHHcCCCCc--CchHHhhHhhh-hcccCHHHHHHHHHHHHHcCCC
Confidence 555656 57778899998888654 66666666665 8999999999999999988854
No 279
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.76 E-value=60 Score=23.35 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=47.0
Q ss_pred hHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 62 SLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 62 ~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|.-.-++|-+ +++++|. .+...-|..|...|++..|-+...++-+- ..-|-.-+..-|..|-+.+++-..++
T Consensus 76 ~YveA~~cykk-~~~~eAv--~cL~~aieIyt~~Grf~~aAk~~~~iaEi-yEsdl~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAV--NCLEKAIEIYTDMGRFTMAAKHHIEIAEI-YESDLQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHHHHhhc-cChHHHH--HHHHHHHHHHHhhhHHHHHHhhhhhHHHH-HhhhHHHHHHHHHHHHHHHHHHcchh
Confidence 34333344433 3666655 67777788888888888877666555321 23454567777888888877777776
No 280
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.57 E-value=15 Score=25.09 Aligned_cols=20 Identities=30% Similarity=0.326 Sum_probs=12.5
Q ss_pred hHhhcCChhHHHHHHHHhHH
Q 039275 4 GYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~ 23 (153)
.|.++|.+++|.+++++..+
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 45666666666666666655
No 281
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=60.18 E-value=98 Score=25.58 Aligned_cols=132 Identities=12% Similarity=-0.021 Sum_probs=80.2
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh-cchhhHHHHHHHHHhcCCccccc-
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD-LSSYSLSSKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~-~~~~~~~~ll~~~~~~g~~~~a~- 80 (153)
...|+-++|.+..+.-.+.. .-+.++|..+--.+-..+.+++|.+. -..+. -|...+--+--...+.++++...
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 44566677776665544432 23445555544444555677777777 22222 23445555544555566655554
Q ss_pred -----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHH------HhcCCCccccchh
Q 039275 81 -----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLA------ASSGPGALDFGKS 138 (153)
Q Consensus 81 -----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~------~~~~~g~~~~a~~ 138 (153)
....|-....+..-.|+...|..++++..+.. -.|+...|.-... -..+.|..+.|.+
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 56778888888888999999999999998664 3566665554433 3445566666655
No 282
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=59.45 E-value=9.6 Score=21.47 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=33.1
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA 45 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 45 (153)
..-.|+.+.+.+++++..+.|+.|.......+..++.+.|.
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988999988888888888776653
No 283
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=58.60 E-value=67 Score=25.93 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=40.9
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcch
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSS 60 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~ 60 (153)
|--.|++++|++-|+...+. -+-|...||.|=-.++...+-++|..- -..++|+-
T Consensus 440 y~ls~efdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HhcchHHHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 44578999999999998874 234567899988888888888877766 33455544
No 284
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=57.45 E-value=26 Score=26.15 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=53.7
Q ss_pred ChhHHHHHHH-HhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHH
Q 039275 10 RFNEALEPFG-KLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKA 87 (153)
Q Consensus 10 ~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 87 (153)
.+++...... +|++.++ |++.+..++=++......|..-.++ ....-.....|..|+.+||..|+.+-.. -.
T Consensus 270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~L-----l~ 343 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELEL-----LL 343 (412)
T ss_pred CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHH-----HH
Confidence 3444444443 3444443 5655444444444444444444444 2333344556666777777666655433 11
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
-++.||..+ -.-++.|+++...=.+.|..+=.+++.+|-+
T Consensus 344 KvQe~CYen--~~fMKaFqkiV~lfYk~dVLsEe~IL~Wyk~ 383 (412)
T KOG2297|consen 344 KVQEYCYEN--IHFMKAFQKIVVLFYKADVLSEETILKWYKE 383 (412)
T ss_pred HHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 112222211 1123455555554455666666677777654
No 285
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.69 E-value=73 Score=23.05 Aligned_cols=86 Identities=13% Similarity=0.085 Sum_probs=53.2
Q ss_pred HhhcCChhHHHHHHHHhHHcC----CCccHHHHHHHHHHhcCCCchHHHHHHh----hhhhcchhhHHHHHHHHHhcCCc
Q 039275 5 YSQAGRFNEALEPFGKLESLG----VHTDEVTMVVVLTASSGPGAWILAKELQ----IELDLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~----~~~~~~~~~~~~ll~~~~~~g~~ 76 (153)
+.+.|++.+|..-|....+.. +.||. +-.|-.++...|++++|-... .+.+.+...
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA-------------- 214 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA-------------- 214 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC--------------
Confidence 467788888888888876652 33333 334677888888888777661 111111111
Q ss_pred cccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 77 RLARDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 77 ~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
+...=-|-....+.|+.++|..+|+++.+.
T Consensus 215 -----pdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 215 -----PDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred -----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122334555667778888888888887754
No 286
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.63 E-value=61 Score=23.44 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=40.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC-CCCCh-hhHHHHHHHhcCCCccccchhHHHHHHHHHHHh
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLG-VHTDE-VTMVVVLAASSGPGALDFGKSNIFLTTAIIEMY 150 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~li~~y 150 (153)
|-..+...|+.++|-.+|..+.+.- =.|.. ..+--+-....++|+.++|.. +|..+++-|
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~a---tl~qv~k~Y 245 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACA---TLQQVIKRY 245 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHC
Confidence 6677888888888888888887542 22322 345556667777788887777 666665544
No 287
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.46 E-value=20 Score=23.23 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 17 PFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 17 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+...+++.|++++..=. .++..+.+.+..-.|.++ ..+..-+..|-=.-|+.+...|-+..-.
T Consensus 8 ~~~~lk~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~~~ 75 (145)
T COG0735 8 AIERLKEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHRLE 75 (145)
T ss_pred HHHHHHHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEEEE
Confidence 44455666666655333 234555555444556666 2222223333223345566666554433
No 288
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.36 E-value=53 Score=24.56 Aligned_cols=81 Identities=11% Similarity=-0.037 Sum_probs=58.0
Q ss_pred HHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHh
Q 039275 15 LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQ 94 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~ 94 (153)
.++|+.|+..++.|.-..|..+.-.+++.=.++++..+...+-.|..-|-.|+..||.. -.++..-.-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsm------------lil~Re~il 330 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSM------------LILVRERIL 330 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHH------------HHHHHHHHH
Confidence 57888899999999999999888888888888888888666655555566666544321 122334455
Q ss_pred cCChHHHHHHHHH
Q 039275 95 AGRFNEALEPFGK 107 (153)
Q Consensus 95 ~g~~~~a~~~~~~ 107 (153)
.|+++-.+++++.
T Consensus 331 ~~DF~~nmkLLQ~ 343 (370)
T KOG4567|consen 331 EGDFTVNMKLLQN 343 (370)
T ss_pred hcchHHHHHHHhc
Confidence 6888888887765
No 289
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.67 E-value=33 Score=23.08 Aligned_cols=24 Identities=17% Similarity=-0.018 Sum_probs=13.8
Q ss_pred hcchhhHHHHHHHHHhcCCccccc
Q 039275 57 DLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 57 ~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.|+..+|..++..+...|+.++|.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~ 164 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEAR 164 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455555555555556666655554
No 290
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.49 E-value=34 Score=23.05 Aligned_cols=45 Identities=11% Similarity=-0.137 Sum_probs=29.0
Q ss_pred hcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHhcCCCccccchh
Q 039275 94 QAGRFNEALEPFGKLESL-GVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..++.+......+-.++. ..+|+...|...+.++..+|+.++|++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~ 165 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQ 165 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 455555444444444322 456788888888888888888887776
No 291
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=55.00 E-value=17 Score=24.25 Aligned_cols=58 Identities=16% Similarity=0.033 Sum_probs=26.8
Q ss_pred hHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 21 LESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 21 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
+++.|+.++..-. .++..+......-.|.++ ..+...+..|.---|+.+.+.|-+.+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 4556666555433 223333333333344444 333334444444445666666665544
No 292
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.99 E-value=94 Score=23.76 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=65.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH--HHHHHHH--HHhcCCCchHHHHHH-hhhhhcchh-hHH--HHHHHHHhcCC
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE--VTMVVVL--TASSGPGAWILAKEL-QIELDLSSY-SLS--SKTSRYAHSGR 75 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll--~~~~~~~~~~~a~~~-~~~~~~~~~-~~~--~ll~~~~~~g~ 75 (153)
+|.-+|+...-...++++... +-||. .+|..=| -++-..|-+++|++. +++++.|.. .|. ++-..+--.|+
T Consensus 146 a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r 224 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR 224 (491)
T ss_pred HHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch
Confidence 566778888888888887543 22333 3333333 344567889999999 777766653 222 23333344445
Q ss_pred ccccc----------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 76 IRLAR----------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 76 ~~~a~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..++. -...|...--.+...+.++.|+++|+.=.
T Consensus 225 ~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 225 HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 44444 45556666667778899999999997543
No 293
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=54.34 E-value=15 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHH
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMV 34 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~ 34 (153)
.|+.++|..+++.++..|..|....+.
T Consensus 10 ~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 10 AGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp TT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 589999999999999999999876554
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=54.30 E-value=1.4e+02 Score=26.67 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=66.9
Q ss_pred hhcCChhHHHHHHHHhHHc-----CCCccH--HHHHHHHHHhcCCC--chHHHHHH--hhhh--------hcchhhHHHH
Q 039275 6 SQAGRFNEALEPFGKLESL-----GVHTDE--VTMVVVLTASSGPG--AWILAKEL--QIEL--------DLSSYSLSSK 66 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~-----g~~p~~--~~~~~ll~~~~~~~--~~~~a~~~--~~~~--------~~~~~~~~~l 66 (153)
....++++=+.+++++++. .+.-|. .-|...|.-+++.| .+++++++ ++++ .|+...+..+
T Consensus 862 ~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i 941 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVI 941 (1265)
T ss_pred HhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHH
Confidence 4456778888888777632 122222 34556666666666 67888877 2222 3444444433
Q ss_pred HHH----HHhcCCccccchHHHHH------HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh--HHHHHHHhcCCCccc
Q 039275 67 TSR----YAHSGRIRLARDPVSCK------AMISGYSQAGRFNEALEPFGKLESLGVHTDEVT--MVVVLAASSGPGALD 134 (153)
Q Consensus 67 l~~----~~~~g~~~~a~~~~~~~------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~ 134 (153)
..+ +.+...+++|. .+|. --+.+|-.+|+|.+|+.+-..|.. .-|... -..|..-+..++++-
T Consensus 942 ~~~ya~hL~~~~~~~~Aa--l~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAA--LMYERCGKLEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHHHHHHhccccHHH--HHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccch
Confidence 333 23444444444 2221 124555666666666666655431 112221 145566666666666
Q ss_pred cchh
Q 039275 135 FGKS 138 (153)
Q Consensus 135 ~a~~ 138 (153)
+|.+
T Consensus 1017 eAa~ 1020 (1265)
T KOG1920|consen 1017 EAAK 1020 (1265)
T ss_pred hHHH
Confidence 6655
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=53.91 E-value=49 Score=20.16 Aligned_cols=29 Identities=14% Similarity=0.280 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
++..-++-+.+|-+-+++..|.++|+-.+
T Consensus 41 ~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 41 EPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44455555555555555555555555544
No 296
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=53.18 E-value=40 Score=25.02 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=23.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA 45 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 45 (153)
.|..+|.+.+|.++.++...- -+.+...+-.++..++..|+
T Consensus 288 ~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD 328 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGD 328 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhcc
Confidence 566666667776666555442 12334444455566666665
No 297
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=53.01 E-value=35 Score=22.18 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=36.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
.+|..+...+.+..+.++.+.+++.|+..+..|....|.-+.
T Consensus 5 ~~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 5 ERIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 467777889999999999999999999999999988777544
No 298
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=52.83 E-value=1.4e+02 Score=25.20 Aligned_cols=104 Identities=17% Similarity=0.081 Sum_probs=63.3
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcch-hhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSS-YSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~-~~~~~ll~~~~~~g~~~~a~ 80 (153)
+.+.+..++|..-+.+..+. .+..+..|.-.=..+-..|.+++|++. -.-+.|+- -+.+++-+.+.+.|+..-|.
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 34444555554444333332 122333333332344455667777776 33334433 46677788888888765555
Q ss_pred --------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 --------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 --------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+...|-.+=..+-+.|+.++|-+.|+.-.
T Consensus 739 ~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 77888888888899999999998887765
No 299
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=52.24 E-value=58 Score=27.37 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=11.1
Q ss_pred CChhHHHHHHHHhHHc
Q 039275 9 GRFNEALEPFGKLESL 24 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~ 24 (153)
|++++|.++|-.|.++
T Consensus 748 g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR 763 (1189)
T ss_pred cchhHhhhhhhccchh
Confidence 6677777777776554
No 300
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=52.03 E-value=1.2e+02 Score=24.24 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 120 (153)
+...|..+-..+...|+.++|.+.+++-... .|...||
T Consensus 452 s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 452 SWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 4467888888999999999999999887654 4554444
No 301
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=51.95 E-value=88 Score=22.53 Aligned_cols=121 Identities=13% Similarity=0.015 Sum_probs=69.5
Q ss_pred hhcCChhHHHHHHHHhHHcC--CCccH------HHHHHHHHHhcCCCchHHHHHH--------h--hhhh---cc-----
Q 039275 6 SQAGRFNEALEPFGKLESLG--VHTDE------VTMVVVLTASSGPGAWILAKEL--------Q--IELD---LS----- 59 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g--~~p~~------~~~~~ll~~~~~~~~~~~a~~~--------~--~~~~---~~----- 59 (153)
.+.|+++.|.-++.+.+..- ..|+. ..|++-.+.+.+..++++|..+ . .+.. |+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999986643 33432 5566666665555477777777 1 1111 11
Q ss_pred hhhHHHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 039275 60 SYSLSSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124 (153)
Q Consensus 60 ~~~~~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 124 (153)
..+...++.+|...+..+... .+..+--=|..+.+.++.+++.+.+.+|...- ......|..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 134445667776666655443 23344344455555677777777777777542 21333444444
Q ss_pred HHh
Q 039275 125 AAS 127 (153)
Q Consensus 125 ~~~ 127 (153)
..+
T Consensus 163 ~~i 165 (278)
T PF08631_consen 163 HHI 165 (278)
T ss_pred HHH
Confidence 444
No 302
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.94 E-value=28 Score=25.08 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=31.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+|-.+++++|.+++.++++.|+.|.- ..++++.++-... +.+-.++
T Consensus 247 ~~~~~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~K~~~-~~E~~rl 293 (333)
T KOG0991|consen 247 QACLKRNIDEALKILAELWKLGYSPED-IITTLFRVVKNMD-VAESLRL 293 (333)
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHhcc-HHHHHHH
Confidence 356678899999999999999998764 3445555533332 4444433
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.59 E-value=30 Score=23.01 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
.++...+ +...|+|++|.++|.++.... |...--..|+..|.
T Consensus 47 ~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL 88 (160)
T PF09613_consen 47 DLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 3444443 468899999999999987543 44433344444333
No 304
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.46 E-value=55 Score=23.15 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----HcC-CCCChhhHHHHHHHhcCCCccccch
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLE----SLG-VHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g-~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
..---|-..|.+.|++++|.++|+.+. +.| ..+...+...+..+..+.|+.+...
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l 238 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYL 238 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 333356688899999999999999985 234 4568888888889998888887543
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=50.19 E-value=75 Score=21.26 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=61.4
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchh-hHHHHHHHHHhcCCccccc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSY-SLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~ 80 (153)
|+.+.+.|.+.. +..+.+.++-||.......+-.+.. ....+.++--++-.-.. .+..+++.+...|++-+|.
T Consensus 36 i~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~AL 109 (167)
T PF07035_consen 36 IDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEAL 109 (167)
T ss_pred HHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHH
Confidence 456666666544 4455677888887777766644433 23334444222211122 4555666777777777776
Q ss_pred ---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
+...-..++.+..+.+|...=..+|+-.++.+
T Consensus 110 r~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 110 RYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34455667777777777776666666665543
No 306
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=49.01 E-value=6.4 Score=21.06 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.4
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHh
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTAS 40 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 40 (153)
|=.++.+.+|+.|.++...|....|+..|+-+
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 55688999999999988888777666555443
No 307
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=48.70 E-value=20 Score=22.39 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=21.5
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLG 25 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g 25 (153)
+|+...++...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3567778888999999999999887
No 308
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=48.24 E-value=29 Score=16.30 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=18.4
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVV 35 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ 35 (153)
++++|..+|++...- .|++.+|-.
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHH
Confidence 578999999998874 588777643
No 309
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=48.00 E-value=53 Score=27.42 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=35.7
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHc--CCCccHHHHHHHHHHhcCCCchHH
Q 039275 1 MISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGPGAWIL 48 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~ 48 (153)
++.+|..+|++.++.++++.+... |-+--...||-.|..+.+.|.++-
T Consensus 34 l~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l 83 (1117)
T COG5108 34 LFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFEL 83 (1117)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccH
Confidence 356888999999999998888543 444455677777888888887654
No 310
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=47.78 E-value=84 Score=22.08 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred CccHHHHHHHHHHhcCCC----chHHHHHH--------------------------------hhhhhcchhhHHHHHHHH
Q 039275 27 HTDEVTMVVVLTASSGPG----AWILAKEL--------------------------------QIELDLSSYSLSSKTSRY 70 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~----~~~~a~~~--------------------------------~~~~~~~~~~~~~ll~~~ 70 (153)
+-+..|...||..+-+.. .+.|-.++ ..|...+...++.+++-|
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~ky 169 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKY 169 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHh
Confidence 457899999999887765 35555544 233344666777777777
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 71 AHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 71 ~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.+.++- ...++..|..|...-...++++-++.-+
T Consensus 170 d~~~~g-----~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 170 DRFGGG-----RIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred ccccCC-----ceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 766522 2455666666666655555555554433
No 311
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=47.52 E-value=1.1e+02 Score=23.71 Aligned_cols=38 Identities=13% Similarity=0.126 Sum_probs=27.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
.++...|+++.|...|+.+++ +.|+-.....=|..|.+
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH
Confidence 456777899999999998885 46766666665555544
No 312
>PRK09462 fur ferric uptake regulator; Provisional
Probab=47.39 E-value=55 Score=21.08 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=37.5
Q ss_pred HHHHHHHhc-CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQA-GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+... ++.--|.++++.+++.+..++..|.=..|+.+.+.|.+.+.
T Consensus 21 ~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~~ 71 (148)
T PRK09462 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (148)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445555554 46788999999999888777888877778888888777543
No 313
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.26 E-value=37 Score=24.99 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|.+-|..--.+|++.|+.+.|.+--+.-.. +-| ...+|..|--+|..+|++.+|.+
T Consensus 114 nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 114 NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 677888888899999999988876655442 334 34578888889999999998887
No 314
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.06 E-value=69 Score=19.92 Aligned_cols=87 Identities=18% Similarity=0.077 Sum_probs=52.1
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHH
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKA 87 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 87 (153)
..+++|..+.+++.+.+-.-..++ -+-+..+...|++++|..+ .....||. ..|-+
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~-lIr~~sLmNrG~Yq~ALl~~~~~~~pdL----------------------~p~~A 76 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVA-LIRLSSLMNRGDYQEALLLPQCHCYPDL----------------------EPWAA 76 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHH-HHHHHHHHHTT-HHHHHHHHTTS--GGG----------------------HHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHH-HHHHHHHHhhHHHHHHHHhcccCCCccH----------------------HHHHH
Confidence 357899999999998765222222 2445567888999999666 44455655 44433
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
| +--+.|.-+++...+..+-.+| .|....|.
T Consensus 77 L--~a~klGL~~~~e~~l~rla~~g-~~~~q~Fa 107 (116)
T PF09477_consen 77 L--CAWKLGLASALESRLTRLASSG-SPELQAFA 107 (116)
T ss_dssp H--HHHHCT-HHHHHHHHHHHCT-S-SHHHHHHH
T ss_pred H--HHHhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3 2357788888888887776555 45444443
No 315
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=46.95 E-value=43 Score=19.78 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.7
Q ss_pred HHHHHHhHHcCCCccHHHHHHHHHHhc
Q 039275 15 LEPFGKLESLGVHTDEVTMVVVLTASS 41 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~ 41 (153)
.++|+.-...|+..|+.+|.++++-+.
T Consensus 28 ~EL~ELa~~AGv~~dp~VFriildLL~ 54 (88)
T PF12926_consen 28 VELYELAQLAGVPMDPEVFRIILDLLR 54 (88)
T ss_pred HHHHHHHHHhCCCcChHHHHHHHHHHH
Confidence 389998999999999999999988754
No 316
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=46.57 E-value=35 Score=22.15 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=34.3
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG 42 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 42 (153)
|....+.+.+..+.++.+.+++.|+..+..|....|.-+.-
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elgl 47 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLRELGA 47 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 45667888899999999999999999999999887775543
No 317
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.40 E-value=1.2e+02 Score=22.61 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=65.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHH-------HHHHHHhcCCCchHHHHHH-------hhhh--hcchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTM-------VVVLTASSGPGAWILAKEL-------QIEL--DLSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~ll~~~~~~~~~~~a~~~-------~~~~--~~~~~~~~~ll 67 (153)
...+.+++++|+..+.++...|+..|..+. .-+..-|...|+...--++ ...+ +....+.-+|+
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLi 91 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLI 91 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHH
Confidence 346778999999999999999988876444 3455677888876665544 1111 12333445555
Q ss_pred HHHHhcCC-ccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 68 SRYAHSGR-IRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 68 ~~~~~~g~-~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
..+-...+ ++... ....=.-+|..+.+.|+..+|..+...+
T Consensus 92 ekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 92 EKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55543333 11111 2223345788889999999998765443
No 318
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.32 E-value=96 Score=21.35 Aligned_cols=65 Identities=15% Similarity=0.064 Sum_probs=39.6
Q ss_pred hhHHHHHHHHhHHcCCCc--cHHHHHHH-----HHHhcCCCchHHHHHH--hhhhhcchhhHHHHHHHHHhcCC
Q 039275 11 FNEALEPFGKLESLGVHT--DEVTMVVV-----LTASSGPGAWILAKEL--QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p--~~~~~~~l-----l~~~~~~~~~~~a~~~--~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
++.|+.+|+.+.+.--.| -......+ +-.|.+.|.+++|.++ +.--.|+....-.-|....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHHccc
Confidence 578999999887764444 23333333 3578999999999999 22224544444444444444443
No 319
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=45.59 E-value=1.1e+02 Score=21.70 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=19.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHc
Q 039275 3 SGYSQAGRFNEALEPFGKLESL 24 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~ 24 (153)
.+|.+.+++++|...|++..+.
T Consensus 77 ~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 77 YAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh
Confidence 4678999999999999999664
No 320
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=45.14 E-value=26 Score=20.49 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.0
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcC-CCcc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLG-VHTD 29 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 29 (153)
++.+.++.-.++|+++.+.|.+.| +.|.
T Consensus 38 ~D~L~rCdT~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 38 IDFLRRCDTEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCCCCHH
Confidence 566777888899999999998876 4443
No 321
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=44.98 E-value=22 Score=22.42 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=20.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhH
Q 039275 93 SQAGRFNEALEPFGKLESLGVHTDEVTM 120 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 120 (153)
+-.|+..+|.++++.++.+|+.|-...|
T Consensus 8 ~L~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 8 LLAGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp HHTT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 4468999999999999999999965544
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=44.88 E-value=87 Score=20.46 Aligned_cols=72 Identities=8% Similarity=0.153 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C--CCChhhHHHHHHHhcCCCccccchh-------------HHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLG---V--HTDEVTMVVVLAASSGPGALDFGKS-------------NIFL 142 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~t~~~li~~~~~~g~~~~a~~-------------~~~~ 142 (153)
.....|.++......+.++...++++.+..-. + ..|..+|..++.+..+...-..+.. ++..
T Consensus 38 k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~d 117 (145)
T PF13762_consen 38 KTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSD 117 (145)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 55778899999999999999999999885321 1 3577789999999977655232222 6777
Q ss_pred HHHHHHHhhc
Q 039275 143 TTAIIEMYAK 152 (153)
Q Consensus 143 ~~~li~~y~k 152 (153)
|-.||.+..|
T Consensus 118 y~~li~~~l~ 127 (145)
T PF13762_consen 118 YSCLIKAALR 127 (145)
T ss_pred HHHHHHHHHc
Confidence 7777776544
No 323
>PRK09462 fur ferric uptake regulator; Provisional
Probab=44.36 E-value=42 Score=21.62 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=15.5
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG 44 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 44 (153)
+-.|.++++.+++.+...+..|.-..|+.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 4444555555544444444444434444444444
No 324
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=1.7e+02 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=23.3
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKE 51 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 51 (153)
+.+.|++..|++-|.++.... +-|...|.----++.+.+.+..|.+
T Consensus 368 ~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALK 413 (539)
T ss_pred HHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHH
Confidence 445555556666555554443 3344445444445555555544444
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=44.23 E-value=1.3e+02 Score=22.43 Aligned_cols=84 Identities=13% Similarity=0.058 Sum_probs=42.2
Q ss_pred CCCccHHHHHHHHHHhcCCC-chHHHHHH----hhhhhcc-------------hh----hHHHHHHHHHhcCCccccc--
Q 039275 25 GVHTDEVTMVVVLTASSGPG-AWILAKEL----QIELDLS-------------SY----SLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 25 g~~p~~~~~~~ll~~~~~~~-~~~~a~~~----~~~~~~~-------------~~----~~~~ll~~~~~~g~~~~a~-- 80 (153)
+.+.|+.-|.+.+....... .++++.++ +.+.-|. .. +++..-+.|.++|.+.+|.
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 35566666666666554433 35555555 1111110 11 2233345556666666555
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
+...|-.++..+...|+--.+..-++.+
T Consensus 302 ~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 302 HQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4555556666666666655555444444
No 326
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=44.03 E-value=1.2e+02 Score=24.62 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=36.7
Q ss_pred HHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 49 AKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 49 a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
+.++-.-+.+....|++.++ +...||++|++. .++...++.-|.+.|+--| ..|.+++.-.-
T Consensus 599 a~~my~~i~e~~RlyssCfK------------N~iIYNaVISgI-----heqmK~lmkl~PR~~iL~D-iHF~aLL~K~k 660 (782)
T PF07218_consen 599 ALQMYSYIAEYIRLYSSCFK------------NMIIYNAVISGI-----HEQMKNLMKLMPRKPILKD-IHFEALLNKEK 660 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhh------------hhHhHHHHHHHH-----HHHHHHHHHhCCCcchhHH-HHHHHHhhhcc
Confidence 33343334444555555555 789999999874 3556666766666654333 33666665444
Q ss_pred C
Q 039275 129 G 129 (153)
Q Consensus 129 ~ 129 (153)
+
T Consensus 661 K 661 (782)
T PF07218_consen 661 K 661 (782)
T ss_pred c
Confidence 3
No 327
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=43.68 E-value=41 Score=18.51 Aligned_cols=43 Identities=14% Similarity=0.041 Sum_probs=35.8
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG 44 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 44 (153)
++.+.+.+.+--+..+.+.+...|...+..+....|.++-+.|
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 5667777888888888888888899888899999888887777
No 328
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=42.74 E-value=60 Score=26.24 Aligned_cols=57 Identities=7% Similarity=-0.061 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-+.+|-..|..--+..-+..|..+|.+..+.+..+ +.+..++++..+|... ...|.+
T Consensus 365 ~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD-~~~Afr 422 (656)
T KOG1914|consen 365 LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD-KETAFR 422 (656)
T ss_pred CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC-hhHHHH
Confidence 45678888888888999999999999999888888 8888899999888643 333433
No 329
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.32 E-value=1.6e+02 Score=22.82 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=50.8
Q ss_pred chhhHHHHHHHHHhcCCccccc----------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcC
Q 039275 59 SSYSLSSKTSRYAHSGRIRLAR----------------------DPVSCKAMISGYSQAGRFNEALEPFGKLE----SLG 112 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~g~~~~a~----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g 112 (153)
-..++..|-+.|.+..++++|. .....-.|--++-..|....|.+.-++-. ..|
T Consensus 161 Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 161 ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence 3466777778888888888877 11111234445667777777776666543 334
Q ss_pred CCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 113 VHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 113 ~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
=+| -+...-.+-+-|...|+.+.|..
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhHHHH
Confidence 333 45556666777788888888776
No 330
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=41.31 E-value=1.7e+02 Score=22.89 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTD 116 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~ 116 (153)
.=.+.+++...|..|+||.|+++++.-+... +.|+
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 4567788999999999999999997765443 4444
No 331
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.18 E-value=36 Score=14.64 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=18.4
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHH
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVL 37 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 37 (153)
|++++|.++|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 56788999999887652 24555554444
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.24 E-value=1.3e+02 Score=20.75 Aligned_cols=111 Identities=17% Similarity=0.080 Sum_probs=67.1
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHH-HHHHHhcCCCchHHHHHHhhhhhcchh---hH---HHHH--HHHHhcCC
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMV-VVLTASSGPGAWILAKELQIELDLSSY---SL---SSKT--SRYAHSGR 75 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~---~~ll--~~~~~~g~ 75 (153)
.++.++.++|+.-|..+.+.|..--++.-. .+-......|+-.+|...+..+..|.. .. .-|= ..+.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 467888999999999998887654333221 223345667777776666333222111 11 1111 12233444
Q ss_pred ccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 76 IRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 76 ~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
+++.. ....-.+|--+-.+.|++.+|...|..+...-..|
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 44433 44555677777789999999999999998655455
No 333
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=39.22 E-value=2.3e+02 Score=23.73 Aligned_cols=30 Identities=10% Similarity=-0.167 Sum_probs=22.0
Q ss_pred HcCCCccHHHHHHHHHHhcCCCc----hHHHHHH
Q 039275 23 SLGVHTDEVTMVVVLTASSGPGA----WILAKEL 52 (153)
Q Consensus 23 ~~g~~p~~~~~~~ll~~~~~~~~----~~~a~~~ 52 (153)
..|++.|...|..||.++....+ .+++.++
T Consensus 210 adgyplN~~LYe~LL~~~FD~~de~~vidE~dEv 243 (677)
T PF05664_consen 210 ADGYPLNVRLYEKLLFSVFDILDEGQVIDEVDEV 243 (677)
T ss_pred ccCCCccHHHHHHHHHHHhcccccchHHhhHHHH
Confidence 34788899999999998877543 4555555
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=71 Score=27.21 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=36.6
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 66 KTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 66 ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.|..+-+.|.- +...-..||..|.+.++.++-.++.+.-. .|.. ..-+...+..|.+.+-+++|..
T Consensus 419 YLe~L~~~gla----~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 419 YLEALHKKGLA----NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred HHHHHHHcccc----cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 34444444443 34555667777777777777666655544 3322 2224455666666666666655
No 335
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.08 E-value=1.1e+02 Score=25.69 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHH--HHHH-HHHHHcCCCCChhhHHHHHHH
Q 039275 65 SKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEA--LEPF-GKLESLGVHTDEVTMVVVLAA 126 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a--~~~~-~~m~~~g~~p~~~t~~~li~~ 126 (153)
+|+++|...|++..+. -...||..|..+.+.|.++-. .+-. +.++.+.+.-|..||..++.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6788888888887777 456778888888888876432 1112 222344466788888888877
Q ss_pred hcC
Q 039275 127 SSG 129 (153)
Q Consensus 127 ~~~ 129 (153)
-..
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 655
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=38.25 E-value=98 Score=24.97 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=28.5
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCC-CccHHHHHHHHHHhcCCC
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPG 44 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~ 44 (153)
++..|.+.+.+++|+.++..|.=.-. ..--.+.+.+.+.+.+..
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~p 458 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQP 458 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCC
Confidence 35679999999999999998832211 112244455566666654
No 337
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.21 E-value=2.8e+02 Score=24.33 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 67 TSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 67 l~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
+.+|--.-+++......+..+-|..+.+.+++..|-.+-.++.+.+-+|...--..-+...+..
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~ek 1132 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEK 1132 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Confidence 4455555555555567788888999999999999999999999888877766555544444433
No 338
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=37.19 E-value=1.8e+02 Score=22.57 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=61.5
Q ss_pred hHhhcCChhHHHHHHHHhHHcC-----CCccHHHHHHHHHHhcCCCchHHHHHH-------hhhhh-cchh-hHH-----
Q 039275 4 GYSQAGRFNEALEPFGKLESLG-----VHTDEVTMVVVLTASSGPGAWILAKEL-------QIELD-LSSY-SLS----- 64 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~-------~~~~~-~~~~-~~~----- 64 (153)
+....+.++++++-|+...+.. -.....+|..+=+-|.+..+++++.-+ ...+. .|.. -|.
T Consensus 131 Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ly 210 (518)
T KOG1941|consen 131 AHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLY 210 (518)
T ss_pred HhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHH
Confidence 4555667888888888765431 222346777777778888888877666 11111 1111 111
Q ss_pred HHHHHHHhcCCccccc--------------hHHHH----HHHHHHHHhcCChHHHHHHHHHH
Q 039275 65 SKTSRYAHSGRIRLAR--------------DPVSC----KAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~--------------~~~~~----~~li~~~~~~g~~~~a~~~~~~m 108 (153)
.|--++-..|.+.+|. |..++ -.+-..|-..|+.+.|+.-|++-
T Consensus 211 hmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 211 HMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2234455666666665 33333 34556677889998888776553
No 339
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=36.69 E-value=2.1e+02 Score=22.44 Aligned_cols=122 Identities=17% Similarity=0.161 Sum_probs=67.8
Q ss_pred HhhcCChhHHHHHHHHhHHcC---CCc---cHHHHHHHHHHhcCCCchHHHHHH---hhhhhcch---hhHHHHHHHHHh
Q 039275 5 YSQAGRFNEALEPFGKLESLG---VHT---DEVTMVVVLTASSGPGAWILAKEL---QIELDLSS---YSLSSKTSRYAH 72 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g---~~p---~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~---~~~~~ll~~~~~ 72 (153)
+...|++++|++.|+.+...= +.- .......+|..| ..+-.++.+ ++.++.+. .-.+.=+.+|--
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~ic---rEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAYFT 290 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEIC---REYILGLSIELERRELPKDPVEDQKRNLELAAYFT 290 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHH---HHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHHC
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHh
Confidence 357889999999998876541 000 111222222221 122223333 33333332 234555677766
Q ss_pred cCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHhcC
Q 039275 73 SGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT-MVVVLAASSG 129 (153)
Q Consensus 73 ~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~ 129 (153)
+=+++..+-..+...-|..+.+.+++-.|-.+-+++.+.+-+|+... -.-++..|-+
T Consensus 291 hc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~ 348 (422)
T PF06957_consen 291 HCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACER 348 (422)
T ss_dssp CS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCC
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 66776666778888888999999999999999999987765555433 3344444443
No 340
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=36.29 E-value=86 Score=18.48 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..|+.++..+....+.+++..+|+++-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~ 29 (88)
T TIGR02531 3 ELLDELFDAILTLKNREECYRFFDDIA 29 (88)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 467888888888888888888888774
No 341
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=35.60 E-value=1.8e+02 Score=21.43 Aligned_cols=30 Identities=27% Similarity=0.426 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 98 FNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 98 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
+++..++++.|++.|++-+.++|.+..-..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~ 107 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIIL 107 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHH
Confidence 466778899999999999999988844433
No 342
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=35.57 E-value=1.8e+02 Score=21.43 Aligned_cols=21 Identities=19% Similarity=0.053 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHhcCCccccc
Q 039275 60 SYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 60 ~~~~~~ll~~~~~~g~~~~a~ 80 (153)
...|--|-..|...|+++.|.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~ 176 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDAL 176 (287)
T ss_pred chhHHHHHHHHHHhcchhHHH
Confidence 344555555555666655555
No 343
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.03 E-value=73 Score=23.06 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
.+..-..|+.. |-.+++++|.++++++-+.|+.|... .++++.++-..
T Consensus 238 hP~~v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K~~ 285 (333)
T KOG0991|consen 238 HPLLVKKMLQA-CLKRNIDEALKILAELWKLGYSPEDI-ITTLFRVVKNM 285 (333)
T ss_pred ChHHHHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHhc
Confidence 44555666665 55679999999999999999999664 56666666554
No 344
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=34.81 E-value=66 Score=27.07 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=37.3
Q ss_pred hHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 46 WILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 46 ~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+++-+.+-..++.|......+-.+|.+.|.-++|. ...-=.+-+.+|...++|.+|.++-+..+
T Consensus 838 f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 838 FGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred hhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333334445566666667777777777777766 11111234566677777777777766554
No 345
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.38 E-value=2.1e+02 Score=21.79 Aligned_cols=50 Identities=30% Similarity=0.189 Sum_probs=35.0
Q ss_pred hhHhhcCChhHHHHHHHHhHH----cCCCccHHHHHHHHHHhcCCC-----chHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLES----LGVHTDEVTMVVVLTASSGPG-----AWILAKEL 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~ll~~~~~~~-----~~~~a~~~ 52 (153)
..||+-|+.+.|.+.+++-.+ -|.+.|+..+.+=+.-+.-.. ..+.|..+
T Consensus 112 eYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~l 170 (393)
T KOG0687|consen 112 EYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSL 170 (393)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 368999999999998877643 478888888777666554433 34555555
No 346
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.30 E-value=1.9e+02 Score=21.32 Aligned_cols=97 Identities=12% Similarity=-0.028 Sum_probs=57.1
Q ss_pred CccHHHHHHHHHHhcCCCchHHHHHH---hhhh-hcchhhHHHHHHHHHhcCC-ccccc--------------hHHHHHH
Q 039275 27 HTDEVTMVVVLTASSGPGAWILAKEL---QIEL-DLSSYSLSSKTSRYAHSGR-IRLAR--------------DPVSCKA 87 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~-~~~~~~~~~ll~~~~~~g~-~~~a~--------------~~~~~~~ 87 (153)
+-|...|--|=..|...|+++.|..- -..+ .+|...+..+-..+....+ -..+. ++.+-.-
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 44566666666677777777666655 1112 2333444444444333222 11221 5666666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
|-..+...|++.+|...|+.|.+.. |-......+|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 7788899999999999999998764 43334444443
No 347
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=34.22 E-value=39 Score=19.10 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=17.2
Q ss_pred ChhHHHHHHHHhHHcCCCcc
Q 039275 10 RFNEALEPFGKLESLGVHTD 29 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~ 29 (153)
..++|++.+.+|.+.|..+.
T Consensus 51 ~~~~A~e~W~~L~~~GW~~~ 70 (75)
T PF07864_consen 51 TREEARELWKELQKTGWRRC 70 (75)
T ss_pred EHHHHHHHHHHHHHcCCEEC
Confidence 46899999999999998764
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.99 E-value=1.7e+02 Score=20.55 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=8.4
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 039275 88 MISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~ 107 (153)
++.++...|+.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33344444444444444443
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.99 E-value=1.6e+02 Score=20.46 Aligned_cols=70 Identities=7% Similarity=0.008 Sum_probs=43.6
Q ss_pred HHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 67 TSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 67 l~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
-+.+...+++++|. ....--.|-......|++|+|+.+++..+..++.+- ....--+.+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~--~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAI--VAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHH--HHHHhhhHHHHcC
Confidence 47778888888887 122222344556777888888888888776554331 1222234566677
Q ss_pred ccccchh
Q 039275 132 ALDFGKS 138 (153)
Q Consensus 132 ~~~~a~~ 138 (153)
+.++|+.
T Consensus 174 ~k~~Ar~ 180 (207)
T COG2976 174 DKQEARA 180 (207)
T ss_pred chHHHHH
Confidence 7777766
No 350
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=33.89 E-value=1.7e+02 Score=20.51 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=58.0
Q ss_pred hhcchhhHHHHHHHHHhcCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCChhh
Q 039275 56 LDLSSYSLSSKTSRYAHSGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG---VHTDEVT 119 (153)
Q Consensus 56 ~~~~~~~~~~ll~~~~~~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t 119 (153)
..|+...--.|-.+..+.|+..+|. |.-..-.+-.+....+++-.|...++++.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4566666667778888888888877 66666677777788889999999988887664 2343 3
Q ss_pred HHHHHHHhcCCCccccchh
Q 039275 120 MVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 120 ~~~li~~~~~~g~~~~a~~ 138 (153)
...+-..+..+|+...|+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 163 HLLFARTLAAQGKYADAES 181 (251)
T ss_pred hHHHHHHHHhcCCchhHHH
Confidence 4455567777777776665
No 351
>PLN02789 farnesyltranstransferase
Probab=33.15 E-value=2e+02 Score=21.34 Aligned_cols=85 Identities=8% Similarity=-0.106 Sum_probs=40.4
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc--hHHHHHH-hhhh---hcchhhHHHHHHHHHhcCCccccc---
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA--WILAKEL-QIEL---DLSSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~-~~~~---~~~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
++++++++++++.+..- -+...|+.--..+.+.+. .+++.++ ..-+ +.|...|+..--.+.+.|+++++.
T Consensus 87 ~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 46777888777765432 222334422222223333 1333333 1212 223445555555555556665555
Q ss_pred ---------hHHHHHHHHHHHHhc
Q 039275 81 ---------DPVSCKAMISGYSQA 95 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~ 95 (153)
+...|+.....+.+.
T Consensus 166 ~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 166 HQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHCCCchhHHHHHHHHHHhc
Confidence 555566555544443
No 352
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.68 E-value=1.9e+02 Score=23.97 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccch
Q 039275 62 SLSSKTSRYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 62 ~~~~ll~~~~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
-|..|-++..+.+++..|. ...-|..|+-.+...|+-+....+=+.-++.| ..|..+-++..+|+++++.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHH
Confidence 3444555555555554444 33334444444444444443333333333333 2333344445555555555
Q ss_pred h
Q 039275 138 S 138 (153)
Q Consensus 138 ~ 138 (153)
+
T Consensus 742 ~ 742 (794)
T KOG0276|consen 742 E 742 (794)
T ss_pred H
Confidence 4
No 353
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=32.61 E-value=39 Score=23.97 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCCCChhh
Q 039275 99 NEALEPFGKLESLGVHTDEVT 119 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~t 119 (153)
..|+++|+-+.+.|++|+..+
T Consensus 67 ~~Al~i~~lL~~~Gv~ps~v~ 87 (269)
T COG3294 67 NSALAIYKLLLEKGVKPSGVT 87 (269)
T ss_pred chHHHHHHHHHhcCCCccccc
Confidence 468899999999999997654
No 354
>PHA02875 ankyrin repeat protein; Provisional
Probab=32.39 E-value=65 Score=24.39 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=28.7
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHH--HHHHHHHhcCCCchHHHHHH-hhhhhcc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVT--MVVVLTASSGPGAWILAKEL-QIELDLS 59 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~-~~~~~~~ 59 (153)
.++.|+.+-+.. +.+.|..|+... ..+.|...+..|+.+-+.-+ +.|..|+
T Consensus 9 A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~ 62 (413)
T PHA02875 9 AILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPD 62 (413)
T ss_pred HHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Confidence 345566544433 345676666543 34556666677777766555 5555444
No 355
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=32.36 E-value=1.2e+02 Score=18.54 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=27.7
Q ss_pred hHHHHHHHHhHH-cCCCc-cHHHHHHHHHHhcCCCchHHHHH-HhhhhhcchhhH
Q 039275 12 NEALEPFGKLES-LGVHT-DEVTMVVVLTASSGPGAWILAKE-LQIELDLSSYSL 63 (153)
Q Consensus 12 ~~a~~~~~~m~~-~g~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~~~~~~~~~~ 63 (153)
++|.+.+.++++ .|+.| |+.+=-.+..++.....+..... ...+++.|..||
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~~~~d~~~E~~~~T~ 59 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVADIKLDGNVEIDWYTF 59 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccccCCCCCeEEEeeee
Confidence 567888888865 49999 55443344444443333332211 144455555554
No 356
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.01 E-value=2.7e+02 Score=23.76 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 039275 87 AMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.|..-|...++++.|++++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 36666666677777766655444
No 357
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=31.40 E-value=15 Score=26.35 Aligned_cols=72 Identities=14% Similarity=0.115 Sum_probs=54.2
Q ss_pred cCCCchHHHHHHhhhhhcchhhHHHHH--HHHHhcCCccccc-------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 41 SGPGAWILAKELQIELDLSSYSLSSKT--SRYAHSGRIRLAR-------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 41 ~~~~~~~~a~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~a~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
++.|.-.+|..+-.|++.|.+|||.+. .-+...|++--|. +...|=+.+..+.+.|++.... -|+++.+.
T Consensus 70 SHAGsSkQAraIlqGL~ADVVTfNQVtDVqiLhdkg~lipAdWq~~lPnnsSPfYS~~aFLVR~GNPK~Ik-dW~DLvRd 148 (341)
T COG4150 70 SHAGSSKQARAILQGLKADVVTFNQVTDVQILHDKGKLIPADWQSRLPNNSSPFYSTMAFLVRKGNPKNIK-DWDDLVRD 148 (341)
T ss_pred ccccchHHHHHHHhhcccceEEeecceeeeeehhcCCccchhhhhhCCCCCCccccchHHHhhcCCcccCc-cHHHHhhh
Confidence 567778888888999999999999874 4456667665555 6777778899999999987654 46666655
Q ss_pred CC
Q 039275 112 GV 113 (153)
Q Consensus 112 g~ 113 (153)
.+
T Consensus 149 DV 150 (341)
T COG4150 149 DV 150 (341)
T ss_pred cc
Confidence 43
No 358
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=30.85 E-value=1.3e+02 Score=24.06 Aligned_cols=51 Identities=16% Similarity=0.024 Sum_probs=39.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHhcCCCccccchh
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVH-TDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+-..+-+.|+.++|.+.|.+|.+..-. -.......+|.++...+.+.+++.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 445556779999999999999765422 234467789999999999998887
No 359
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.83 E-value=2.1e+02 Score=20.81 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT---DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...+|..+...+.+.|+++.|...+..+...+..+ +......-.+..-..|+..+|..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~ 205 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQ 205 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHH
Confidence 56789999999999999999999999988654222 22233333344444455555544
No 360
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=30.80 E-value=52 Score=20.51 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCCCChh
Q 039275 102 LEPFGKLESLGVHTDEV 118 (153)
Q Consensus 102 ~~~~~~m~~~g~~p~~~ 118 (153)
..+.++|...|.+||..
T Consensus 55 ~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 55 LLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHcCCCCChh
Confidence 46789999999999874
No 361
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=30.71 E-value=60 Score=18.94 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHcCCCCChhhH
Q 039275 99 NEALEPFGKLESLGVHTDEVTM 120 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~t~ 120 (153)
+...+..++++..|+.||...+
T Consensus 12 ~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 12 ELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEE
Confidence 3445666788899999997654
No 362
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=30.66 E-value=1.3e+02 Score=18.48 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
.+....+.+.+|-|-+++..|.++|+-++.+ +.+....|..+++
T Consensus 44 ~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 44 EPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 6677778888888889999999988888743 2233336666654
No 363
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=30.34 E-value=63 Score=17.45 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=15.1
Q ss_pred hhHHHHHHHHhHHcCCCcc
Q 039275 11 FNEALEPFGKLESLGVHTD 29 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~ 29 (153)
.+...++|+.|.+.|+-|.
T Consensus 44 ~~~~~~l~~~m~~kGwY~~ 62 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQP 62 (64)
T ss_pred HHHHHHHHHHHHHcCCcCC
Confidence 4667889999999997654
No 364
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=30.13 E-value=2.6e+02 Score=21.60 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=52.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC------------cc--HHHHHHHHHHhcCCCchHHHHHH---hhh-hhcchhhHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH------------TD--EVTMVVVLTASSGPGAWILAKEL---QIE-LDLSSYSLSS 65 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~------------p~--~~~~~~ll~~~~~~~~~~~a~~~---~~~-~~~~~~~~~~ 65 (153)
.+.+.|.+++|..=|+...++.-. |- .......+......|+...+.+. --. -+.|...+..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 457889999999999998876321 11 12333445566667777777766 112 2446677777
Q ss_pred HHHHHHhcCCccccc
Q 039275 66 KTSRYAHSGRIRLAR 80 (153)
Q Consensus 66 ll~~~~~~g~~~~a~ 80 (153)
-.++|...|++..|.
T Consensus 195 Rakc~i~~~e~k~AI 209 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAI 209 (504)
T ss_pred HHHHHHhcCcHHHHH
Confidence 888999999988887
No 365
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=30.05 E-value=96 Score=23.17 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
---.|+..|.+.|.+++|.++....+
T Consensus 108 ElP~Lm~~ci~~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 108 ELPQLMDTCIRNGNYSEALELSAHVR 133 (338)
T ss_pred hhHHHHHHHHhcccHhhHHHHHHHHH
Confidence 33456666777777777776666554
No 366
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=29.97 E-value=2.8e+02 Score=21.85 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=68.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc-----hHHHHHHhhhhhcch-hhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-----WILAKELQIELDLSS-YSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~-~~~~~ll~~~~~~g~~ 76 (153)
.++.+.|+..++-++++.+++..-+|++.. .. ...+.|+ ...+.++.+ ++||. .+--.+..+-...|++
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY--~~ar~gdta~dRlkRa~~L~s-lk~nnaes~~~va~aAlda~e~ 345 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIAL--LY--VRARSGDTALDRLKRAKKLES-LKPNNAESSLAVAEAALDAGEF 345 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHH--HH--HHhcCCCcHHHHHHHHHHHHh-cCccchHHHHHHHHHHHhccch
Confidence 367899999999999999999876666532 22 2345554 333444432 34433 3444555666777777
Q ss_pred cccc-----------hHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCC
Q 039275 77 RLAR-----------DPVSCKAMISGY-SQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 77 ~~a~-----------~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
..|. ....|-.|-..- +..|+-+++...+.+-.+.--.|
T Consensus 346 ~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 346 SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 7666 555665555443 45599999999888876653333
No 367
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=2.4e+02 Score=21.12 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=37.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChh-------hHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTDEV-------TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-------t~~~li~~~~~~g~~~~a~~ 138 (153)
.-..+.+++++|...+.++...|+..|+. |...+.+-|...|++..-.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 34567789999999999998888776544 45667778888888776665
No 368
>cd08791 DED_DEDD2 Death Effector Domain of DEDD2. Death Effector Domain (DED) found in DEDD2. DEDD2 has been shown to bind to itself, DEDD, and to the two tandem DED-containing caspases, caspase-8 and -10. It may play a role in apoptosis. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways.
Probab=29.61 E-value=90 Score=19.10 Aligned_cols=53 Identities=19% Similarity=0.120 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSL 63 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~ 63 (153)
+++...++|..+.+.|. -+..-+..++..+...++-|....+ +..+.|+...+
T Consensus 48 ~i~SGldLf~~Leer~~-l~e~Nt~~L~qLLr~i~RhDLl~~v~~k~r~~v~p~~~~~ 104 (106)
T cd08791 48 RPKSGVELLLELERRGY-CDESNLRPLLQLLRVLTRHDLLPFVSQKRRRTVSPERYKY 104 (106)
T ss_pred hccCHHHHHHHHHHhCc-CChhhHHHHHHHHHHhhHHHHHHHHHHhccCCCCcchhcc
Confidence 66778899988876652 3444455566666666666666666 55567776554
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.58 E-value=69 Score=20.89 Aligned_cols=73 Identities=7% Similarity=-0.142 Sum_probs=38.7
Q ss_pred CccHHHHHHHHHHhcCCCch---HHHHHH-----hhhhhc-chhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcC-
Q 039275 27 HTDEVTMVVVLTASSGPGAW---ILAKEL-----QIELDL-SSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAG- 96 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~---~~a~~~-----~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g- 96 (153)
.|+..+--.+-.++.+..+- .+...+ ++..+. ...-.--|.-++.+.++++.+. ..+.++....
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~------~yvd~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSL------RYVDALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHH------HHHHHHHhhCC
Confidence 45555555556666666543 333334 211111 1122223456778888887766 4455555544
Q ss_pred ChHHHHHHH
Q 039275 97 RFNEALEPF 105 (153)
Q Consensus 97 ~~~~a~~~~ 105 (153)
+..+|..+=
T Consensus 103 ~n~Qa~~Lk 111 (149)
T KOG3364|consen 103 NNRQALELK 111 (149)
T ss_pred CcHHHHHHH
Confidence 777776543
No 370
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=29.52 E-value=1.8e+02 Score=20.31 Aligned_cols=41 Identities=15% Similarity=-0.051 Sum_probs=28.3
Q ss_pred HcCCCccHHHHHHHHHHhcCCC-chHHHHHH-hhhhhcchhhH
Q 039275 23 SLGVHTDEVTMVVVLTASSGPG-AWILAKEL-QIELDLSSYSL 63 (153)
Q Consensus 23 ~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~-~~~~~~~~~~~ 63 (153)
+--+.||.+|...+-....-.+ ++++..++ +.++++|...|
T Consensus 138 rp~FVvD~Yt~R~l~rlg~i~~k~ydeik~~fe~~l~~~~~ly 180 (215)
T COG2231 138 RPVFVVDKYTRRLLSRLGGIEEKKYDEIKELFEENLPENLRLY 180 (215)
T ss_pred CcccchhHHHHHHHHHhcccccccHHHHHHHHHhcchhHHHHH
Confidence 3457788888877766555544 68888888 66677776644
No 371
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=29.47 E-value=56 Score=18.38 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=27.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchh
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSY 61 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~ 61 (153)
..++.|+++-+..+++ .+..++. -++.+...+..|+.+-+..+ ..|..++..
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~ 55 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQ 55 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-B
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhccccccc
Confidence 3456666555444443 4444443 22355555677777766666 666665543
No 372
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=29.42 E-value=93 Score=17.65 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHH
Q 039275 10 RFNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWIL 48 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~ 48 (153)
+...+.++|..|.+.| +.|+. ...+-..+...++.+-
T Consensus 35 ~~~s~l~lf~~Le~~~~l~~~n--l~~L~~lL~~i~R~DL 72 (77)
T cd00045 35 KIKTPFDLFLVLERQGKLGEDN--LSYLEELLRSIGRNDL 72 (77)
T ss_pred ccCCHHHHHHHHHHcCCCCCch--HHHHHHHHHHcCHHHH
Confidence 5677889999998876 55532 2223333344444443
No 373
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=29.23 E-value=1.4e+02 Score=18.38 Aligned_cols=86 Identities=17% Similarity=0.075 Sum_probs=52.2
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAM 88 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~l 88 (153)
..++|-.+-+++...+-. ...+--+-+.++...|++++|..+ ..-..||. ..|-+|
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdl----------------------epw~AL 76 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDL----------------------EPWLAL 76 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchH----------------------HHHHHH
Confidence 458888888888876433 222222334677888999999999 44456755 444333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
-. -+.|..++...-+..|..+| .|....|.
T Consensus 77 ce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 77 CE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 22 35566666666666666555 45444443
No 374
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=29.01 E-value=2.1e+02 Score=20.07 Aligned_cols=50 Identities=16% Similarity=0.198 Sum_probs=36.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+..+.|+..+|...|.+-...-+.-|....-.+-++....+++..|...
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 35567777788888887777666667777777777777777777776666
No 375
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=28.75 E-value=1.2e+02 Score=26.65 Aligned_cols=47 Identities=17% Similarity=0.190 Sum_probs=35.5
Q ss_pred HHHHHHHHcCC-CCChhhHHHHHHHhcCCCccccchh---------HHHHHHHHHHHhh
Q 039275 103 EPFGKLESLGV-HTDEVTMVVVLAASSGPGALDFGKS---------NIFLTTAIIEMYA 151 (153)
Q Consensus 103 ~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~---------~~~~~~~li~~y~ 151 (153)
++.+.|++.|+ +|+ ||..+++-+.+.|-+-+... ...+|+-|.+.|.
T Consensus 1091 ~vi~~MKerGIGRPS--TYAkive~L~~RgYvie~kg~~~lipTk~Gi~Vy~yL~~~~~ 1147 (1187)
T COG1110 1091 EVVEEMKERGIGRPS--TYAKIVETLLRRGYVIESKGRKKLIPTKLGIEVYEYLSEKYK 1147 (1187)
T ss_pred hHHHHHHhcCCCCCc--HHHHHHHHHhcCCeEEEecCceEeccccccHHHHHHHHHhcc
Confidence 57899999986 675 78889998888876554444 7788888877664
No 376
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=28.64 E-value=1.3e+02 Score=17.88 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=16.4
Q ss_pred hhcCChhHHHHHHHHhHH-cCCCccHHHHHHHHHHhcCCC
Q 039275 6 SQAGRFNEALEPFGKLES-LGVHTDEVTMVVVLTASSGPG 44 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~~ 44 (153)
-+.|-.+++.+++.+-++ .|-. .|...|+.++-..+
T Consensus 43 ~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~ 79 (90)
T cd08780 43 DREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENG 79 (90)
T ss_pred ccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHcc
Confidence 344455555555554433 2322 44444454444333
No 377
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.47 E-value=48 Score=24.76 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=23.9
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHc-CCCccHHHHH
Q 039275 1 MISGYSQAGRFNEALEPFGKLESL-GVHTDEVTMV 34 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~ 34 (153)
+|+.|.++|.+++|.++..-.++- ...|+.....
T Consensus 112 Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~ 146 (338)
T PF04124_consen 112 LMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVK 146 (338)
T ss_pred HHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHH
Confidence 478999999999999999777542 1234444333
No 378
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.38 E-value=2.3e+02 Score=22.34 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=41.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESL---GVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.-..+.|+..+|.+.+.+-... .++|+...|...-.+..++|+.++|..
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eais 308 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAIS 308 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhh
Confidence 3457889999999999998733 577888889999999999999999988
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=28.36 E-value=1.7e+02 Score=23.21 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=51.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHH-HHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL-TASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
.+.+.++++.|++++.+..+ +.||.+.|-..= .++.+.+++.+|..= ..-++.| .+.+++|.+.|..-
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d----P~~~K~Y~rrg~a~---- 82 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD----PTYIKAYVRRGTAV---- 82 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC----chhhheeeeccHHH----
Confidence 34566777888888877766 456666554333 455566665554433 2222222 33445555554321
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
-+.+++.+|+..|+... .+.|+..-+...+.-|
T Consensus 83 -----------m~l~~~~~A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 83 -----------MALGEFKKALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred -----------HhHHHHHHHHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 22234444554444433 3456666555555544
No 380
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=28.27 E-value=88 Score=16.01 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
.|......|+++.|.+..++....
T Consensus 7 ~i~~~i~~g~~~~a~~~~~~~~~~ 30 (58)
T smart00668 7 RIRELILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCHH
Confidence 456668899999999999887643
No 381
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=28.22 E-value=29 Score=18.09 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=14.7
Q ss_pred ChhHHHHHHHHhHHcC-CCcc
Q 039275 10 RFNEALEPFGKLESLG-VHTD 29 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g-~~p~ 29 (153)
+++.|...|..++..| |+|+
T Consensus 28 d~~~A~~~F~~l~~~~~IP~e 48 (51)
T PF03943_consen 28 DYERALQNFEELKAQGKIPPE 48 (51)
T ss_dssp -CCHHHHHHHHCCCTT-S-CC
T ss_pred CHHHHHHHHHHHHHcCCCChH
Confidence 7899999999997765 5554
No 382
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=28.22 E-value=81 Score=20.11 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=18.7
Q ss_pred HhcCChHHHHHHHHHHH--HcCCCCCh
Q 039275 93 SQAGRFNEALEPFGKLE--SLGVHTDE 117 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~--~~g~~p~~ 117 (153)
-+.=.||+|..++.+-+ +.|+-||-
T Consensus 96 ~~~v~FDeARliy~~~~f~~NgI~pdG 122 (128)
T PF09435_consen 96 RRRVNFDEARLIYTERRFKKNGIGPDG 122 (128)
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCCCCC
Confidence 45568899999997654 77888874
No 383
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=28.07 E-value=1.6e+02 Score=18.58 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=8.9
Q ss_pred hcCChhHHHHHHHHhHH
Q 039275 7 QAGRFNEALEPFGKLES 23 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~ 23 (153)
..|..++|.++|++-..
T Consensus 43 ~~~~~~~A~~F~~~f~~ 59 (133)
T cd08044 43 ASGHLEEAKSFFERFSG 59 (133)
T ss_pred HCCCHHHHHHHHHHhhH
Confidence 44555555555554443
No 384
>cd08304 DD_superfamily The Death Domain Superfamily of protein-protein interaction domains. The Death Domain (DD) superfamily includes the DD, Pyrin, CARD (Caspase activation and recruitment domain) and DED (Death Effector Domain) families. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. They are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways including those that impact innate immunity, inflammation, differentiation, and cancer.
Probab=27.42 E-value=1e+02 Score=17.08 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=11.7
Q ss_pred HHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc
Q 039275 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGA 45 (153)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 45 (153)
+.++++.+.++| ..++..++.++.+.|.
T Consensus 35 a~~ll~~l~~~~----~~a~~~~~~vL~~~~~ 62 (69)
T cd08304 35 ANELLNILESQY----NHTLQLLFALFEDLGL 62 (69)
T ss_pred HHHHHHHHHHhC----cchHHHHHHHHHHcCC
Confidence 344444444443 3333444444444443
No 385
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.23 E-value=90 Score=23.79 Aligned_cols=47 Identities=19% Similarity=0.089 Sum_probs=31.9
Q ss_pred hhcCChhHHHHHHHHhHHc-CCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 6 SQAGRFNEALEPFGKLESL-GVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.|+..+|.++|+.+.+. -+..-.-+...+|.++.....+.++..+
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999888664 1111123334677888877777777776
No 386
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.05 E-value=1.8e+02 Score=21.89 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
-++..|...|-.+.|.+.|+.+.-+.+.-|+..|.
T Consensus 222 lLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~ 256 (365)
T PF09797_consen 222 LLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL 256 (365)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH
Confidence 45566777777777777777776555555555444
No 387
>PRK12356 glutaminase; Reviewed
Probab=26.76 E-value=86 Score=23.43 Aligned_cols=69 Identities=12% Similarity=0.192 Sum_probs=35.6
Q ss_pred hhhhhcchhhHHHHHHHHHhcCCccccc---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 53 QIELDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 53 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
+-|.+|+..-||+++..-...|.+.--. ...+-..||.+-....+++...++++++-...+..|..+|.
T Consensus 91 ~VG~EPSG~~FNsi~~Le~~~g~P~NPmINAGAI~~~sll~g~~~~~~~~~il~~~~~~ag~~l~~de~v~~ 162 (319)
T PRK12356 91 KIGADPTGLPFNSVIAIELHGGKPLNPLVNAGAIATTSLVPGANSDERWQRILDGQQRFAGRELALSDEVYQ 162 (319)
T ss_pred HhCCCCCCCCcchHHHhhccCCCCCCccccHHHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCccCHHHHH
Confidence 6677888888888865544445443333 23333445544222233444444555444334555665554
No 388
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=26.69 E-value=2.7e+02 Score=20.69 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC
Q 039275 91 GYSQAGRFNEALEPFGKLESLGVHT 115 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p 115 (153)
-....|+..+|.++++.+...|..|
T Consensus 217 dail~g~~~~a~~~l~~L~~~ge~p 241 (334)
T COG1466 217 DALLKGDVKKALRLLRDLLLEGEEP 241 (334)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCcH
Confidence 3467789999999999999999777
No 389
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=26.51 E-value=1.8e+02 Score=23.89 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcccc---------chHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 65 SKTSRYAHSGRIRLA---------RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
..|++|.+..-.... .+...-.++|--+.|+|+.++|.++..+.. ..++.....|...+..+....
T Consensus 85 ~~V~afv~~~~~~~~~~~~~~l~~~~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~-~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 85 NKVRAFVNVRLKRPGAWTDSGLEIVNGDPIWALIYYCLRCGDYDEALEVANENR-NQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp HHHHHHHHCTTBESSCBSSTT--EETTEEHHHHHHHHHTTT-HHHHHHHHHHTG-GGS-TTTTHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHhcccCCCcccccccCCCCccHHHHHHHHhcCCHHHHHHHHHHhh-hhhcchhHHHHHHHHHHHhCC
Confidence 356666655543222 134444589999999999999999996655 456777788999999998863
No 390
>cd08320 Pyrin_NALPs Pyrin death domain found in NALP proteins. Pyrin Death Domain found in NALP (NACHT, LRR and PYD domains) proteins including NALP1 (CARD7, NLRP1), NALP3 (NLRP3, Cryopyrin, CIAS1), and NALP12 (NLRP12, Monarch-1), among others. Mammals contains at least 14 NALP proteins, named NALP1-14 (or NLRP1-14). NALPs are members of the NBS-LRR family of proteins possessing a tripartite domain structure including a C-terminal LRR (leucine-rich repeats), a central nucleotide-binding site (NBS) domain or NACHT (for neuronal apoptosis inhibitor protein, CIITA, HET-E and TP1), and an N-terminal protein-protein interaction domain, which is a Pyrin domain in the case of NALPs. The NBS-LRR family is also referred to as the NLR (Nod-like Receptor) or CATERPILLER (for CARD, transcription enhancer, R-(purine)-binding, pyrin, lots of LRRs) family. NALP1 contains an additional Caspase activation and recruitment domain (CARD) at the C-terminus. NALP1 and NALP3 are both involved in the assembly
Probab=26.39 E-value=62 Score=18.95 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 039275 85 CKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
-+.|+..|....-++-+..+|+.|
T Consensus 48 a~lLv~~y~~~~A~~~t~~if~~m 71 (86)
T cd08320 48 AELLVEHYGGQQAWDVTLSIFEKM 71 (86)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHH
Confidence 444555555555555555555555
No 391
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=26.34 E-value=1.9e+02 Score=18.77 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=38.4
Q ss_pred HhcCChHHHHHHHHHHHHcC-C-----CCChhhHHHHHHHhcCC-CccccchhHHHHHHHHHHHhh
Q 039275 93 SQAGRFNEALEPFGKLESLG-V-----HTDEVTMVVVLAASSGP-GALDFGKSNIFLTTAIIEMYA 151 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g-~-----~p~~~t~~~li~~~~~~-g~~~~a~~~~~~~~~li~~y~ 151 (153)
....+++.+..+++++...| + ..|..+...+++.+++. ++.....--..+.+.+++.|.
T Consensus 43 ~~~~~p~~~vavl~EL~~R~~L~~AL~~Rde~~L~piL~Fl~k~i~~pr~~~~l~~v~~~ildiY~ 108 (148)
T PF09384_consen 43 VKNKSPEVVVAVLEELIRRGALRAALAGRDEESLEPILKFLIKNITDPRYTRILVDVANIILDIYS 108 (148)
T ss_pred hcCCChHHHHHHHHHHHHccHHHHHHHhCCHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHH
Confidence 46677777778888877554 2 24788888888877664 333333335666677777665
No 392
>PRK13342 recombination factor protein RarA; Reviewed
Probab=26.17 E-value=3.1e+02 Score=21.13 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=63.1
Q ss_pred hhHHHHHHHHhHHc---CC-CccHHHHHHHHHHhcCCCchHHHHHH-hhhhh-cchhhHHHHHHHHHhc-CCccccchHH
Q 039275 11 FNEALEPFGKLESL---GV-HTDEVTMVVVLTASSGPGAWILAKEL-QIELD-LSSYSLSSKTSRYAHS-GRIRLARDPV 83 (153)
Q Consensus 11 ~~~a~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~-~~~~~~~~ll~~~~~~-g~~~~a~~~~ 83 (153)
.++...++++.... |+ ..+......++... .|+...+..+ +.-.. ....+...+-...... ..++. +..
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~--~~~ 228 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDK--DGD 228 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCC--Ccc
Confidence 35666666665332 44 55666666665543 6787777776 11111 1112222222222211 11222 112
Q ss_pred HHHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 84 SCKAMISGYS---QAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 84 ~~~~li~~~~---~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
..-.+++++. +..+++.|...+..|.+.|..|....-..++.++-..|.
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 2234444444 458999999999999999999986655555555544443
No 393
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=26.02 E-value=4.1e+02 Score=22.53 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=62.5
Q ss_pred hHHHHHHHHhHH--------cCCCccHHHHHHHHHHhcCCCchHHHHHH-hh---hhhc---ch--hhHHHHHHH-----
Q 039275 12 NEALEPFGKLES--------LGVHTDEVTMVVVLTASSGPGAWILAKEL-QI---ELDL---SS--YSLSSKTSR----- 69 (153)
Q Consensus 12 ~~a~~~~~~m~~--------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~---~~~~---~~--~~~~~ll~~----- 69 (153)
++...++++... .++..+......+.... .|+..++... +. .... +. .+...+-+.
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 445555555433 34566666666666543 6887777776 11 0000 01 111111111
Q ss_pred --HHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 70 --YAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 70 --~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
|-+.|+. ....-++++.. ++.++++.|...+..|.+.|..|....=..++-+.-.-|.
T Consensus 249 ~~ydk~gd~----hyd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 249 VLYDKEGDA----HFDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred hhcccCCCC----CHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 2222221 22333344444 5678999999999999999999977655555555544444
No 394
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.62 E-value=1.6e+02 Score=17.61 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=12.7
Q ss_pred hhhHhhcCChhHHHHHHHHhH
Q 039275 2 ISGYSQAGRFNEALEPFGKLE 22 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~ 22 (153)
|..|...|+.++|..-+.++.
T Consensus 9 l~ey~~~~d~~ea~~~l~el~ 29 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKELK 29 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHhcCCCHHHHHHHHHHhC
Confidence 445666677777777666653
No 395
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=25.28 E-value=1.6e+02 Score=22.61 Aligned_cols=41 Identities=10% Similarity=-0.117 Sum_probs=30.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
...-+.+.+++..|.++|+++......|+...+-..+..+|
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~ 176 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLT 176 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHH
Confidence 44567889999999999999998877777766554444444
No 396
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=24.96 E-value=72 Score=17.79 Aligned_cols=21 Identities=24% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhcCCCchHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAK 50 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~ 50 (153)
..|...|+.++-+.|+.+-+.
T Consensus 57 ~at~~~L~~aL~~~~~~d~~~ 77 (83)
T PF00531_consen 57 NATVDQLIQALRDIGRNDLAE 77 (83)
T ss_dssp TSSHHHHHHHHHHTTHHHHHH
T ss_pred CCcHHHHHHHHHHCCcHHHHH
Confidence 334444444444444444433
No 397
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=24.79 E-value=2.3e+02 Score=23.21 Aligned_cols=45 Identities=16% Similarity=0.009 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 63 LSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
|+.+-..|.+.+++.+|. ..|.---....+-+-..+=+++|++|.
T Consensus 321 Yty~gg~~yR~~~~~eA~--~~Wa~aa~Vi~~YnY~reDeEiYKEfl 365 (618)
T PF05053_consen 321 YTYLGGYYYRHKRYREAL--RSWAEAADVIRKYNYSREDEEIYKEFL 365 (618)
T ss_dssp HHHHHHHHHHTT-HHHHH--HHHHHHHHHHTTSB--GGGHHHHHHHH
T ss_pred ceehhhHHHHHHHHHHHH--HHHHHHHHHHHHcccCccHHHHHHHHH
Confidence 444555556666666655 444433333333333334445555554
No 398
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=24.24 E-value=1.4e+02 Score=20.82 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.2
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.++-.++|+.++.-|+-||..-|..-+-+-++..++..|..+
T Consensus 123 ~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARAL 164 (267)
T COG4167 123 EQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARAL 164 (267)
T ss_pred HHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHH
Confidence 456678999999999999998888766666777788777777
No 399
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=24.14 E-value=2.2e+02 Score=18.70 Aligned_cols=13 Identities=31% Similarity=0.100 Sum_probs=6.5
Q ss_pred hcCCCchHHHHHH
Q 039275 40 SSGPGAWILAKEL 52 (153)
Q Consensus 40 ~~~~~~~~~a~~~ 52 (153)
++..|+++.|.+.
T Consensus 53 laE~g~Ld~AlE~ 65 (175)
T KOG4555|consen 53 LAEAGDLDGALEL 65 (175)
T ss_pred HHhccchHHHHHH
Confidence 3444555555554
No 400
>PRK10292 hypothetical protein; Provisional
Probab=24.09 E-value=1.4e+02 Score=16.54 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 106 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-+|...|.+|+......+|.--...++.+....
T Consensus 23 l~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~ 55 (69)
T PRK10292 23 LEMRDLGQEPKHIVIAGVLRTALANKRIQRSEL 55 (69)
T ss_pred HHHHHcCCCcchhhHHHHHHHHHHhcccccCHH
Confidence 345677999999999999965555555544443
No 401
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=23.78 E-value=1.2e+02 Score=15.68 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
|+.+...|--.++..+.=++.+.|+.|.+
T Consensus 11 iS~lLntgLd~etL~ici~L~e~GVnPea 39 (48)
T PF12554_consen 11 ISDLLNTGLDRETLSICIELCENGVNPEA 39 (48)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHCCCCHHH
Confidence 34455566666777777777777777653
No 402
>smart00535 RIBOc Ribonuclease III family.
Probab=23.53 E-value=1.9e+02 Score=17.73 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
-..++.++|.+..-.+.++++.+++.++..
T Consensus 94 ~a~~~eAliGAi~ld~g~~~~~~~i~~~~~ 123 (129)
T smart00535 94 LADVFEALIGAIYLDSGLEAAREFIRDLLG 123 (129)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 457889999988888889999999998874
No 403
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=23.46 E-value=1.5e+02 Score=16.62 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=28.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
.+|.-..+...+..=.++.+.+.+.|+..+..|.+--|.=+.
T Consensus 8 ~~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 8 ELIKELISEHEISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp HHHHHHHHHS---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 456667777788888889999999999999999988776543
No 404
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=23.21 E-value=1.1e+02 Score=19.22 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
..-.++.+ ...|+..++.+.++++.+.|..|...
T Consensus 17 ~i~~l~~a-i~~~d~~~~l~~~~~l~~~G~d~~~~ 50 (143)
T PF12169_consen 17 QIFELLDA-ILEGDAAEALELLNELLEQGKDPKQF 50 (143)
T ss_dssp HHHHHHHH-HHTT-HHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCHHHH
Confidence 33445554 56789999999999999999888544
No 405
>cd08321 Pyrin_ASC-like Pyrin Death Domain found in ASC. Pyrin Death Domain found in ASC (Apoptosis-associated speck-like protein containing a CARD) and similar proteins. ASC is an adaptor molecule that functions in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. ASC contains two domains from the Death Domain (DD) superfamily, an N-terminal pyrin-like domain and a C-terminal Caspase activation and recruitment domain (CARD). Through these 2 domains, ASC serves as an adaptor for inflammasome integrity and oligomerizes to form supramolecular assemblies. Other members of this subfamily are associated with ATPase domains and their function remains unknown. In general, Pyrin is a subfamily of the DD superfamily and functions in several signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=23.08 E-value=93 Score=17.98 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=21.7
Q ss_pred ccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 76 IRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 76 ~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
++.|.....-+.|+..|....-++-+.++|+.|-
T Consensus 39 le~ad~~dla~lLv~~y~~~~A~~vt~~il~~in 72 (82)
T cd08321 39 LENADRVDLVDKMVQFYGEEYAVEVTVKILRKMN 72 (82)
T ss_pred hccCCHHHHHHHHHHHcChhHHHHHHHHHHHHhc
Confidence 3444334455666777767777777777777775
No 406
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=23.01 E-value=1.1e+02 Score=19.13 Aligned_cols=35 Identities=11% Similarity=0.052 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 99 NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
++...+.++=++.|-+|...+|+++.+.+..+|.-
T Consensus 7 e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLELGLR 41 (118)
T PRK13713 7 EKINAIVEERRQEGAREKDVSFSSVASMLLELGLR 41 (118)
T ss_pred HHHHHHHHHHHHcCCCccCccHHHHHHHHHHHhHH
Confidence 45556666667889999999999999888888753
No 407
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=22.78 E-value=1e+02 Score=17.02 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred hhHHHHHHHHhHHcCCCc
Q 039275 11 FNEALEPFGKLESLGVHT 28 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p 28 (153)
+.+|-.+.++|.+.|+..
T Consensus 34 ynrAariid~LE~~GiVs 51 (65)
T PF09397_consen 34 YNRAARIIDQLEEEGIVS 51 (65)
T ss_dssp HHHHHHHHHHHHHCTSBE
T ss_pred HHHHHHHHHHHHHCCCCC
Confidence 578999999999999753
No 408
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.67 E-value=53 Score=16.64 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=14.1
Q ss_pred HHHHHHhHHcCCCccHHHH
Q 039275 15 LEPFGKLESLGVHTDEVTM 33 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~ 33 (153)
.++..++.+.|++|-+.|-
T Consensus 9 ~eL~~~L~~~G~~~gPIt~ 27 (44)
T smart00540 9 AELRAELKQYGLPPGPITD 27 (44)
T ss_pred HHHHHHHHHcCCCCCCcCc
Confidence 4677888889988876553
No 409
>PF00317 Ribonuc_red_lgN: Ribonucleotide reductase, all-alpha domain; InterPro: IPR013509 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides. It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The reduction of ribonucleotides to deoxyribonucleotides involves the transfer of free radicals, the function of each metallocofactor is to generate an active site thiyl radical. This thiyl radical then initiates the nucleotide reduction process by hydrogen atom abstraction from the ribonucleotide []. The radical-based reaction involves five cysteines: two of these are located at adjacent anti-parallel strands in a new type of ten-stranded alpha/beta-barrel; two others reside at the carboxyl end in a flexible arm; and the fifth, in a loop in the centre of the barrel, is positioned to initiate the radical reaction []. There are several regions of similarity in the sequence of the large chain of prokaryotes, eukaryotes and viruses spread across 3 domains: an N-terminal domain common to the mammalian and bacterial enzymes; a C-terminal domain common to the mammalian and viral ribonucleotide reductases; and a central domain common to all three [].; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0005524 ATP binding, 0006260 DNA replication, 0055114 oxidation-reduction process; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A 1XJN_A 1XJK_A 3O0O_B 1XJF_A 3O0Q_A ....
Probab=22.52 E-value=66 Score=18.44 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=21.4
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHH
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMV 34 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~ 34 (153)
..+.+.+.++|+.|.+..+.|+..|+.
T Consensus 50 ~~~~~~~~~fy~~l~~~~f~patP~l~ 76 (83)
T PF00317_consen 50 EDRMEWAEEFYDLLSNQKFIPATPTLS 76 (83)
T ss_dssp CTHHHHHHHHHHHHHTTSEEE-HHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeecCCHHHh
Confidence 366788899999999988888888764
No 410
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=22.50 E-value=83 Score=24.73 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=40.9
Q ss_pred HHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCC---CCChhhHHHHHHHhcCCCccccchh
Q 039275 82 PVSCKAMISG--YSQAGRFNEALEPFGKLESLGV---HTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 82 ~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..++..-+.| +|+.|+......+|+.-.+.|. +.=..+|..+-++|.-++++++|.+
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 3455555543 6889999999999998887773 2233456777778888888888887
No 411
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=22.28 E-value=69 Score=17.94 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=22.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVT 32 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 32 (153)
.+.-.+.++-+.++|+.+.+.|+.+|...
T Consensus 8 ~~~m~~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 8 SNKKSLSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred cccCccccCHHHHHHHHHHHcCCcEEEEE
Confidence 34456777888899999999998888653
No 412
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=22.25 E-value=2.3e+02 Score=18.22 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHH----HHHHhcCChHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMI----SGYSQAGRFNEALEP 104 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li----~~~~~~g~~~~a~~~ 104 (153)
|..++..|-.++.+.|++++++.- -..-|..|.+.|++.+.. -..|-+.+ .++-..|+.++|..-
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~s----------A~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~ 122 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQS----------ADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKE 122 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHH----------HHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHH----------HHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHH
Confidence 456777777888888888876543 223456677777776654 12222222 355677899999888
Q ss_pred HH---HHH--HcCCCCChh
Q 039275 105 FG---KLE--SLGVHTDEV 118 (153)
Q Consensus 105 ~~---~m~--~~g~~p~~~ 118 (153)
|+ +|. ++|--|+..
T Consensus 123 fr~agEMiaERKGE~~~ke 141 (144)
T PF12968_consen 123 FRMAGEMIAERKGEMPGKE 141 (144)
T ss_dssp HHHHHHHHHH--S--TTHH
T ss_pred HHHHHHHHHHHcCCCcchh
Confidence 75 443 335555543
No 413
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=22.23 E-value=1.6e+02 Score=16.61 Aligned_cols=39 Identities=15% Similarity=0.058 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccch
Q 039275 97 RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 97 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
..+.+.+++....... ++..|...|+.++.+.|..+.+.
T Consensus 45 ~~~~~~~lL~~W~~~~--g~~at~~~L~~aL~~~~~~d~a~ 83 (88)
T smart00005 45 LAEQSVQLLRLWEQRE--GKNATLGTLLEALRKMGRDDAVE 83 (88)
T ss_pred HHHHHHHHHHHHHHcc--chhhHHHHHHHHHHHcChHHHHH
Confidence 3456666666665432 33467777777777777666543
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=22.15 E-value=2.3e+02 Score=18.32 Aligned_cols=43 Identities=9% Similarity=0.161 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVL 124 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 124 (153)
++..-.+-+.++-+-+|+.-|.++|+-++.+ +.+....|-.++
T Consensus 83 ~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 83 SPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 5666666777777777777777777776632 233333454444
No 415
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.98 E-value=3.7e+02 Score=23.42 Aligned_cols=119 Identities=15% Similarity=0.039 Sum_probs=0.0
Q ss_pred ChhhHhhcCChhHHHHHHHHhHH---cCCCccHHHHHHHHHHhcCCCch--HHHHHH-----hhhhhcchhhHHHHHHHH
Q 039275 1 MISGYSQAGRFNEALEPFGKLES---LGVHTDEVTMVVVLTASSGPGAW--ILAKEL-----QIELDLSSYSLSSKTSRY 70 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~~~~--~~a~~~-----~~~~~~~~~~~~~ll~~~ 70 (153)
|+.-|...|++++|+++|.+.-. ..-.--..-+-.++.-+-+.+.. +...++ .....-...+++.
T Consensus 510 Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~----- 584 (877)
T KOG2063|consen 510 LIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS----- 584 (877)
T ss_pred HHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec-----
Q ss_pred HhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 71 AHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 71 ~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
.+-+++. ..=.--+-.|+.....+-+..+++.+....=.++..-.+.++.-|++
T Consensus 585 ---~~~~~~~--sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 585 ---EDKQEAE--SISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ---cChhhhc--cCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
No 416
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=21.97 E-value=3.1e+02 Score=21.97 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 65 SKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
.|++-|...|++.+|. -.+.+.+++.+.-+.|+-+..+.++++.-.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~ 571 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFK 571 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 4445555555555544 344455555555555555544444444433
No 417
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.94 E-value=1.9e+02 Score=17.28 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=13.0
Q ss_pred hhhHhhcCChhHHHHHHHHhHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~ 23 (153)
|..|...+++++|..-+.++..
T Consensus 9 l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 9 IEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHcCCHHHHHHHHHHhCC
Confidence 3455566666666666665543
No 418
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=21.91 E-value=33 Score=26.95 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=26.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+-.+.-+.+++-.++++.+++.| .+| ....-|++|.+.++++.|++
T Consensus 62 QPR~G~~~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~ 107 (480)
T TIGR01503 62 QPRAGVALLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAV 107 (480)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHH
Confidence 33344456666677777776665 333 22334566667777777666
No 419
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=21.73 E-value=1.5e+02 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.155 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 98 FNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 98 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
++.|+++-+.+++.|+.||..||-..+.-+
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~L 311 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQL 311 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Confidence 588999999999999999999987665543
No 420
>PF14162 YozD: YozD-like protein
Probab=21.70 E-value=1.4e+02 Score=15.70 Aligned_cols=20 Identities=20% Similarity=0.007 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHcCCCCChh
Q 039275 99 NEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~~ 118 (153)
+-|.-.|+++.+.|..|+..
T Consensus 12 EIAefFy~eL~kRGyvP~e~ 31 (57)
T PF14162_consen 12 EIAEFFYHELVKRGYVPTEE 31 (57)
T ss_pred HHHHHHHHHHHHccCCCcHH
Confidence 44667889999999999654
No 421
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=21.70 E-value=73 Score=14.77 Aligned_cols=21 Identities=24% Similarity=0.052 Sum_probs=14.0
Q ss_pred hHHHHHHHHhHHcCCCccHHH
Q 039275 12 NEALEPFGKLESLGVHTDEVT 32 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~ 32 (153)
+.|.++...+.+.|-.|+.++
T Consensus 12 d~a~rv~~f~~~ngRlPnyV~ 32 (33)
T PF09373_consen 12 DMASRVNNFYESNGRLPNYVS 32 (33)
T ss_pred HHHHHHHHHHHHcCCCCCeee
Confidence 445566666777888887654
No 422
>PF01371 Trp_repressor: Trp repressor protein; InterPro: IPR000831 The Trp repressor (TrpR) binds to at least five operators in the Escherichia coli genome, repressing gene expression. The operators at which it binds vary considerably in DNA sequence and location within the promoter; when bound to the Trp operon it recognises the sequence 5'-ACTAGT-3' and acts to prevent the initiation of transcription. The TrpR controls the trpEDCBA (trpO) operon and the genes for trpR, aroH, mtr and aroL, which are involved in the biosynthesis and uptake of the amino acid tryptophan []. The repressor binds to the operators only in the presence of L-tryptophan, thereby controlling the intracellular level of its effector; the complex also regulates Trp repressor biosynthesis by binding to its own regulatory region. TrpR acts as a dimer that is composed of identical 6-helical subunits, where four of the helices form the core of the protein and intertwine with the corresponding helices from the other subunit.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3FRW_H 3KOR_A 3SSW_N 1P6Z_N 1CO0_B 1JHG_A 1WRT_S 1WRS_R 1WRP_R 1RCS_B ....
Probab=21.55 E-value=81 Score=18.61 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.|..++.++....+.+++..+|+.+-
T Consensus 2 ~~~~l~~~i~~l~~~ee~~~f~~dL~ 27 (87)
T PF01371_consen 2 DWDELFEAILSLKDEEECYDFFEDLC 27 (87)
T ss_dssp HHHHHHHHHHCHHCHHCHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHhC
Confidence 36777888888888888888887764
No 423
>PHA01754 hypothetical protein
Probab=21.51 E-value=1.2e+02 Score=16.56 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 039275 99 NEALEPFGKLESLGVHTD 116 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~ 116 (153)
.++.+++++|++..++|-
T Consensus 47 ~EViKvvkemrr~~vkpv 64 (69)
T PHA01754 47 LEVVKVVKEMRRLQVKPV 64 (69)
T ss_pred HHHHHHHHHHHHcccCcc
Confidence 456678888888888874
No 424
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.45 E-value=2.9e+02 Score=19.21 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.4
Q ss_pred HhcCChHHHHHHHHHHHH
Q 039275 93 SQAGRFNEALEPFGKLES 110 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~ 110 (153)
.+.|++++|.+.++-|..
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 567999999999999874
No 425
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.39 E-value=1.6e+02 Score=17.79 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=31.2
Q ss_pred hcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+..+++.|.++|..+.+.|.--.. .+..+..-+...++.+--.-+
T Consensus 36 ~~e~i~s~~~Lf~~Lee~gll~e~-~~~fL~ELLy~I~R~DLL~~L 80 (97)
T cd08790 36 ERGLIRSGRDFLLALERQGRCDET-NFRQVLQLLRIITRHDLLPYV 80 (97)
T ss_pred hccCcCcHHHHHHHHHHcCCCccc-hHHHHHHHHHHHHHHHHHHHh
Confidence 446788999999999988864333 445677777777777665333
No 426
>smart00031 DED Death effector domain.
Probab=21.34 E-value=1.7e+02 Score=16.56 Aligned_cols=37 Identities=19% Similarity=0.209 Sum_probs=21.4
Q ss_pred hhHHHHHHHHhHHcC-CCccHHHHHHHHHHhcCCCchHHH
Q 039275 11 FNEALEPFGKLESLG-VHTDEVTMVVVLTASSGPGAWILA 49 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a 49 (153)
.+.+.++|..|.+.| +.|+. ...+.+.+...++.+-.
T Consensus 37 ~~~~ldlf~~Le~~~~l~~~n--l~~L~elL~~i~R~DLl 74 (79)
T smart00031 37 IKTFLDLFSALEEQGLLSEDN--LSLLAELLYRLRRLDLL 74 (79)
T ss_pred cCCHHHHHHHHHHcCCCCCcc--HHHHHHHHHHcCHHHHH
Confidence 567888999997776 44432 23344444455555443
No 427
>PF14044 NETI: NETI protein
Probab=21.25 E-value=91 Score=16.80 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCCCCh
Q 039275 101 ALEPFGKLESLGVHTDE 117 (153)
Q Consensus 101 a~~~~~~m~~~g~~p~~ 117 (153)
-.+.++.|++.|..|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 45678999999988843
No 428
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=21.03 E-value=1e+02 Score=18.49 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=15.8
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 039275 92 YSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~ 110 (153)
.++.|++++|.+.+++-.+
T Consensus 25 ~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 25 AAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4899999999999987654
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=20.89 E-value=2.8e+02 Score=19.62 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
+....-..|+++++.+.++++...+..++..--+.+-.+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 5566778899999999999999887777666555555554
No 430
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=20.67 E-value=1.6e+02 Score=17.24 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=20.9
Q ss_pred CCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 26 VHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 26 ~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+.|+...||.+++.....+.+.-|..+
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~ 38 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNY 38 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHH
Confidence 568888888888888877777766666
No 431
>PF05261 Tra_M: TraM protein, DNA-binding; InterPro: IPR007925 The TraM protein is an essential part of the DNA transfer machinery of the conjugative resistance plasmid R1 (IncFII). On the basis of mutational analyses, it was shown that the essential transfer protein TraM has at least two functions. First, a functional TraM protein was found to be required for normal levels of transfer gene expression. Second, experimental evidence was obtained that TraM stimulates efficient site-specific single-stranded DNA cleavage at the oriT, in vivo. Furthermore, a specific interaction of the cytoplasmic TraM protein with the membrane protein TraD was demonstrated, suggesting that the TraM protein creates a physical link between the relaxosomal nucleoprotein complex and the membrane-bound DNA transfer apparatus [].; GO: 0003677 DNA binding, 0000746 conjugation; PDB: 3ON0_A 3OMY_B 1DP3_A 2G9E_A 3D8A_B 2G7O_A.
Probab=20.47 E-value=60 Score=20.60 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=30.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA 45 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 45 (153)
+.|.+..-.++.-.+.++=++.|-.|.-+.|.++-+.+...|.
T Consensus 5 q~y~s~~v~~~I~~iVe~r~qeGA~~~dvs~SSv~smLlELGL 47 (127)
T PF05261_consen 5 QIYVSNKVLEEINDIVEERRQEGATEKDVSFSSVSSMLLELGL 47 (127)
T ss_dssp CCE--HCHHHHHHHHHHHHHCCT-TTTT--HHHHHHHHHHCCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhH
Confidence 4566666677888888888888998988888888888887774
No 432
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=20.26 E-value=47 Score=18.62 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=15.2
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 039275 92 YSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~~ 111 (153)
+.+..++++|.++..+|+..
T Consensus 37 l~~~~~~~eA~eiVrklQ~e 56 (68)
T PF09082_consen 37 LARAENAEEASEIVRKLQEE 56 (68)
T ss_dssp BS--SSHHHHHHHHHHHSS-
T ss_pred EEecCCHHHHHHHHHHHHHH
Confidence 56788999999999999865
No 433
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=20.13 E-value=2.8e+02 Score=22.48 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=60.1
Q ss_pred cCChhHH-HHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhh----hhcchhhHHHHHHHHHhcCCccccc--
Q 039275 8 AGRFNEA-LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE----LDLSSYSLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 8 ~g~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~-- 80 (153)
.|++..| .++|..+++.--.|+.....+.|. ...|.++.+...-++ +.....+-..+++..-+.|+.++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4555444 456677777666677766665554 467899998888333 3345556666777777777777665
Q ss_pred ----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 81 ----------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 81 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
+......--...-..|-+|++.-.|+++..
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 222222111222334667777777777653
No 434
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=20.05 E-value=3.8e+02 Score=19.95 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=49.7
Q ss_pred hhhHhhcCChhHHHHHHHHhH--HcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh--cchhhHHHHHHHH----
Q 039275 2 ISGYSQAGRFNEALEPFGKLE--SLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD--LSSYSLSSKTSRY---- 70 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~--~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~--~~~~~~~~ll~~~---- 70 (153)
|.++++.+++.++..+.-+-- ...++|.+--..+++ |+|.+.+..+.++ .-..+ -+.--|.++.+.|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 678888889988887766553 346777777777766 4688887777777 11111 1122366655444
Q ss_pred -HhcCCccccc
Q 039275 71 -AHSGRIRLAR 80 (153)
Q Consensus 71 -~~~g~~~~a~ 80 (153)
.=.|.+++|+
T Consensus 168 LlPLG~~~eAe 178 (309)
T PF07163_consen 168 LLPLGHFSEAE 178 (309)
T ss_pred HhccccHHHHH
Confidence 4568888887
Done!