Query 039275
Match_columns 153
No_of_seqs 110 out of 1370
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 13:29:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 6E-34 2.1E-38 216.6 14.0 152 1-152 32-222 (501)
2 4g26_A Pentatricopeptide repea 99.9 1.3E-27 4.5E-32 181.8 12.0 138 1-138 67-231 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2E-22 7E-27 160.7 3.8 116 1-138 133-257 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 2E-19 7E-24 143.7 5.9 102 29-152 126-248 (1134)
5 2xpi_A Anaphase-promoting comp 99.6 2.1E-14 7.1E-19 110.0 12.4 149 3-152 381-562 (597)
6 2xpi_A Anaphase-promoting comp 99.6 1.6E-14 5.5E-19 110.6 10.2 148 3-152 313-487 (597)
7 1b89_A Protein (clathrin heavy 99.2 6.8E-12 2.3E-16 93.6 2.7 126 3-138 69-198 (449)
8 1b89_A Protein (clathrin heavy 99.2 2.6E-11 8.8E-16 90.5 5.5 137 1-152 38-189 (449)
9 2y4t_A DNAJ homolog subfamily 99.1 4.4E-09 1.5E-13 77.7 13.7 148 3-152 34-223 (450)
10 3mkr_A Coatomer subunit epsilo 99.1 2.5E-09 8.5E-14 75.9 11.7 146 3-150 73-244 (291)
11 1w3b_A UDP-N-acetylglucosamine 99.1 5.8E-09 2E-13 75.9 13.9 77 61-138 238-326 (388)
12 1w3b_A UDP-N-acetylglucosamine 99.0 1.8E-08 6.1E-13 73.4 14.5 145 5-152 145-317 (388)
13 2y4t_A DNAJ homolog subfamily 99.0 1.3E-08 4.4E-13 75.2 13.2 145 4-151 152-340 (450)
14 3uq3_A Heat shock protein STI1 98.9 3.5E-08 1.2E-12 67.3 12.7 132 4-138 14-194 (258)
15 2ho1_A Type 4 fimbrial biogene 98.9 6.3E-08 2.2E-12 66.2 13.1 132 5-138 81-230 (252)
16 2pl2_A Hypothetical conserved 98.9 5.6E-08 1.9E-12 65.8 11.8 132 4-138 14-172 (217)
17 4eqf_A PEX5-related protein; a 98.8 1E-07 3.5E-12 68.7 13.0 76 4-80 74-153 (365)
18 2q7f_A YRRB protein; TPR, prot 98.8 1.1E-07 3.7E-12 64.4 12.3 133 4-138 66-214 (243)
19 3as5_A MAMA; tetratricopeptide 98.8 5.2E-08 1.8E-12 63.0 10.3 134 3-138 16-165 (186)
20 3vtx_A MAMA; tetratricopeptide 98.8 1.1E-07 3.8E-12 62.1 11.9 133 4-138 14-162 (184)
21 2q7f_A YRRB protein; TPR, prot 98.8 3.4E-08 1.2E-12 66.9 9.4 146 4-151 32-204 (243)
22 2ho1_A Type 4 fimbrial biogene 98.8 8.5E-08 2.9E-12 65.5 11.1 134 3-138 45-196 (252)
23 1fch_A Peroxisomal targeting s 98.8 1.9E-07 6.5E-12 67.0 13.0 78 60-138 217-306 (368)
24 2vq2_A PILW, putative fimbrial 98.8 1.6E-07 5.5E-12 62.6 11.4 133 4-138 17-168 (225)
25 2vq2_A PILW, putative fimbrial 98.7 1.6E-07 5.5E-12 62.6 10.9 135 3-138 50-203 (225)
26 4eqf_A PEX5-related protein; a 98.7 2E-07 6.9E-12 67.1 11.7 133 4-138 108-302 (365)
27 3hym_B Cell division cycle pro 98.7 1.8E-07 6.1E-12 66.0 11.1 58 81-138 192-257 (330)
28 3hym_B Cell division cycle pro 98.7 1.9E-07 6.6E-12 65.8 11.1 133 4-138 31-180 (330)
29 1fch_A Peroxisomal targeting s 98.7 8.4E-08 2.9E-12 68.9 9.1 135 4-138 190-351 (368)
30 2fo7_A Synthetic consensus TPR 98.7 2.4E-07 8E-12 56.6 9.8 115 3-138 9-124 (136)
31 3cv0_A Peroxisome targeting si 98.7 9.8E-08 3.3E-12 67.2 8.7 133 5-138 148-307 (327)
32 3uq3_A Heat shock protein STI1 98.7 4.7E-07 1.6E-11 61.6 11.3 135 3-138 46-228 (258)
33 2gw1_A Mitochondrial precursor 98.6 4E-07 1.4E-11 68.0 11.1 131 7-138 201-359 (514)
34 3cv0_A Peroxisome targeting si 98.6 3.7E-07 1.3E-11 64.2 10.3 55 83-138 173-227 (327)
35 3mkr_A Coatomer subunit epsilo 98.6 4.9E-07 1.7E-11 64.0 10.3 126 3-136 109-253 (291)
36 2pl2_A Hypothetical conserved 98.6 1.1E-06 3.8E-11 59.3 11.2 132 4-138 48-206 (217)
37 2gw1_A Mitochondrial precursor 98.6 5.1E-07 1.8E-11 67.4 10.3 133 3-138 245-393 (514)
38 3ieg_A DNAJ homolog subfamily 98.6 2.1E-06 7E-11 61.0 12.8 133 4-138 12-175 (359)
39 3fp2_A TPR repeat-containing p 98.6 1.2E-06 4.1E-11 65.9 12.1 132 4-138 252-399 (537)
40 3nf1_A KLC 1, kinesin light ch 98.5 7.3E-07 2.5E-11 62.3 8.9 136 3-138 35-216 (311)
41 4gyw_A UDP-N-acetylglucosamine 98.5 2.7E-06 9.2E-11 67.5 12.5 133 3-138 17-166 (723)
42 1xnf_A Lipoprotein NLPI; TPR, 98.5 5.7E-07 2E-11 61.9 7.8 131 6-138 16-165 (275)
43 3ieg_A DNAJ homolog subfamily 98.5 5E-06 1.7E-10 59.0 12.7 76 4-80 129-208 (359)
44 3edt_B KLC 2, kinesin light ch 98.5 9.1E-07 3.1E-11 60.8 8.6 108 3-110 51-197 (283)
45 1xnf_A Lipoprotein NLPI; TPR, 98.4 7.7E-06 2.6E-10 56.1 12.8 133 3-138 51-198 (275)
46 3nf1_A KLC 1, kinesin light ch 98.4 1.2E-06 4.1E-11 61.2 8.7 108 3-110 77-223 (311)
47 4abn_A Tetratricopeptide repea 98.4 1.3E-06 4.4E-11 65.9 8.7 134 4-138 111-279 (474)
48 3u4t_A TPR repeat-containing p 98.4 3.6E-06 1.2E-10 57.9 10.3 132 4-138 12-163 (272)
49 3as5_A MAMA; tetratricopeptide 98.4 3.5E-06 1.2E-10 54.1 9.7 108 3-111 50-173 (186)
50 2fo7_A Synthetic consensus TPR 98.4 4.3E-06 1.5E-10 50.8 8.9 99 33-151 4-114 (136)
51 3fp2_A TPR repeat-containing p 98.3 4.8E-06 1.7E-10 62.6 10.1 127 9-138 216-365 (537)
52 4i17_A Hypothetical protein; T 98.3 1.2E-05 4.1E-10 54.1 10.9 128 4-133 16-169 (228)
53 3edt_B KLC 2, kinesin light ch 98.3 3.1E-06 1.1E-10 58.0 8.1 134 5-138 11-190 (283)
54 1hh8_A P67PHOX, NCF-2, neutrop 98.3 2.2E-05 7.6E-10 52.0 11.9 120 4-127 15-166 (213)
55 2ond_A Cleavage stimulation fa 98.3 1E-05 3.5E-10 57.3 10.6 133 4-138 108-262 (308)
56 1qqe_A Vesicular transport pro 98.3 1.1E-05 3.6E-10 56.9 10.4 135 4-138 46-220 (292)
57 1ouv_A Conserved hypothetical 98.2 7.3E-05 2.5E-09 51.6 13.9 128 5-138 16-171 (273)
58 2h6f_A Protein farnesyltransfe 98.2 5.2E-05 1.8E-09 55.8 13.1 130 4-136 106-254 (382)
59 3u4t_A TPR repeat-containing p 98.2 2.6E-05 8.8E-10 53.5 10.6 134 3-138 45-200 (272)
60 4abn_A Tetratricopeptide repea 98.2 1.2E-05 4.1E-10 60.6 9.5 132 3-138 145-313 (474)
61 3ulq_A Response regulator aspa 98.1 3.7E-05 1.3E-09 55.8 11.3 135 4-138 112-285 (383)
62 1ouv_A Conserved hypothetical 98.1 0.00017 5.8E-09 49.7 14.2 42 8-52 55-100 (273)
63 2r5s_A Uncharacterized protein 98.1 2.1E-05 7.2E-10 51.1 8.5 134 4-138 15-165 (176)
64 3vtx_A MAMA; tetratricopeptide 98.1 8.5E-05 2.9E-09 48.1 10.9 112 3-117 47-174 (184)
65 1xi4_A Clathrin heavy chain; a 98.0 6.6E-05 2.3E-09 63.2 11.9 120 4-138 1114-1242(1630)
66 3qou_A Protein YBBN; thioredox 98.0 9.1E-05 3.1E-09 52.0 11.0 134 4-138 126-276 (287)
67 2vsy_A XCC0866; transferase, g 98.0 2.7E-05 9.1E-10 59.7 8.6 129 8-138 2-149 (568)
68 2ond_A Cleavage stimulation fa 98.0 0.00013 4.4E-09 51.6 11.0 131 7-138 69-224 (308)
69 1xi4_A Clathrin heavy chain; a 98.0 0.00011 3.9E-09 61.9 11.9 133 2-138 1141-1301(1630)
70 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00011 3.6E-09 51.6 10.4 136 3-138 83-258 (293)
71 3ro2_A PINS homolog, G-protein 97.9 5E-05 1.7E-09 53.0 8.5 134 4-138 14-204 (338)
72 4a1s_A PINS, partner of inscut 97.9 3.1E-05 1.1E-09 56.4 7.4 49 4-52 95-148 (411)
73 3qky_A Outer membrane assembly 97.9 7.8E-05 2.7E-09 51.2 9.0 134 4-138 24-216 (261)
74 1na0_A Designed protein CTPR3; 97.9 0.00029 9.8E-09 41.9 10.5 90 3-112 17-107 (125)
75 3q15_A PSP28, response regulat 97.9 5.4E-05 1.8E-09 55.0 8.2 134 5-138 111-282 (378)
76 3gw4_A Uncharacterized protein 97.9 6.3E-05 2.2E-09 49.2 7.9 133 5-138 2-168 (203)
77 4a1s_A PINS, partner of inscut 97.9 6.7E-05 2.3E-09 54.5 8.7 134 4-138 57-244 (411)
78 3ro2_A PINS homolog, G-protein 97.9 6.6E-05 2.3E-09 52.4 8.2 135 4-138 92-284 (338)
79 2h6f_A Protein farnesyltransfe 97.9 0.00047 1.6E-08 50.7 13.0 145 4-151 140-320 (382)
80 1a17_A Serine/threonine protei 97.9 0.00014 4.9E-09 45.8 9.1 114 4-138 22-138 (166)
81 4gco_A Protein STI-1; structur 97.9 0.0006 2.1E-08 41.8 11.6 95 4-120 22-117 (126)
82 2ooe_A Cleavage stimulation fa 97.9 0.00029 1E-08 53.4 12.0 133 4-138 330-484 (530)
83 4gyw_A UDP-N-acetylglucosamine 97.9 0.00014 4.8E-09 57.8 10.4 121 29-151 8-156 (723)
84 2pzi_A Probable serine/threoni 97.8 7.1E-05 2.4E-09 58.9 8.6 129 7-138 403-555 (681)
85 3sf4_A G-protein-signaling mod 97.8 9.2E-05 3.1E-09 53.4 8.4 76 4-80 18-107 (406)
86 3u3w_A Transcriptional activat 97.8 0.00022 7.6E-09 49.9 10.2 137 2-138 82-258 (293)
87 2vyi_A SGTA protein; chaperone 97.8 0.00012 4.2E-09 44.0 7.7 109 4-133 21-130 (131)
88 2e2e_A Formate-dependent nitri 97.8 0.00018 6E-09 46.4 8.9 108 4-112 19-145 (177)
89 3sf4_A G-protein-signaling mod 97.8 4.8E-05 1.7E-09 54.9 6.8 128 11-138 163-328 (406)
90 2ifu_A Gamma-SNAP; membrane fu 97.8 8E-05 2.7E-09 52.7 7.5 134 4-138 45-216 (307)
91 2lni_A Stress-induced-phosphop 97.8 0.0007 2.4E-08 40.8 10.8 89 3-111 24-113 (133)
92 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.00025 8.4E-09 46.9 8.7 105 34-138 10-142 (213)
93 3mv2_B Coatomer subunit epsilo 97.7 0.00012 4.2E-09 52.3 6.8 122 14-138 85-232 (310)
94 4i17_A Hypothetical protein; T 97.7 0.00053 1.8E-08 45.9 9.7 109 28-138 5-138 (228)
95 2vsy_A XCC0866; transferase, g 97.6 0.00061 2.1E-08 52.2 10.7 108 4-112 32-158 (568)
96 3n71_A Histone lysine methyltr 97.6 0.00013 4.5E-09 55.4 6.9 77 4-80 318-413 (490)
97 2ifu_A Gamma-SNAP; membrane fu 97.6 0.00036 1.2E-08 49.3 8.6 130 8-138 4-176 (307)
98 1na0_A Designed protein CTPR3; 97.6 0.00048 1.6E-08 40.9 8.0 89 30-138 9-98 (125)
99 4ga2_A E3 SUMO-protein ligase 97.6 0.0003 1E-08 44.5 7.3 74 5-80 7-85 (150)
100 3ro3_A PINS homolog, G-protein 97.6 0.00025 8.6E-09 44.1 6.9 122 4-138 18-150 (164)
101 2pzi_A Probable serine/threoni 97.6 0.00059 2E-08 53.7 10.3 129 4-136 442-587 (681)
102 3mv2_B Coatomer subunit epsilo 97.6 0.0014 4.9E-08 46.8 11.2 134 3-138 108-274 (310)
103 1elr_A TPR2A-domain of HOP; HO 97.6 0.00066 2.3E-08 40.7 8.4 105 3-125 12-120 (131)
104 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0012 4E-08 44.5 10.4 133 4-138 13-205 (225)
105 4ga2_A E3 SUMO-protein ligase 97.6 0.00016 5.4E-09 45.8 5.6 72 63-136 34-118 (150)
106 2kck_A TPR repeat; tetratricop 97.5 0.0019 6.5E-08 37.5 9.8 91 4-112 15-107 (112)
107 1p5q_A FKBP52, FK506-binding p 97.5 0.00062 2.1E-08 48.9 8.8 110 4-136 156-283 (336)
108 2vyi_A SGTA protein; chaperone 97.5 0.0007 2.4E-08 40.5 7.9 73 3-76 54-130 (131)
109 3gyz_A Chaperone protein IPGC; 97.5 0.0012 4.1E-08 42.1 9.2 90 4-117 45-137 (151)
110 3urz_A Uncharacterized protein 97.5 0.00025 8.5E-09 47.3 5.8 91 4-96 13-136 (208)
111 2ooe_A Cleavage stimulation fa 97.5 0.0015 5.1E-08 49.6 10.8 129 8-138 292-446 (530)
112 3upv_A Heat shock protein STI1 97.5 0.0023 7.7E-08 38.7 9.8 88 4-111 13-101 (126)
113 3k9i_A BH0479 protein; putativ 97.5 0.00034 1.2E-08 42.1 5.9 104 7-129 2-109 (117)
114 4gcn_A Protein STI-1; structur 97.5 0.0017 5.9E-08 39.7 9.2 100 4-121 17-120 (127)
115 2lni_A Stress-induced-phosphop 97.5 0.0009 3.1E-08 40.3 7.9 92 27-138 13-105 (133)
116 3gw4_A Uncharacterized protein 97.4 0.0012 4E-08 43.0 8.9 107 4-110 35-175 (203)
117 1hz4_A MALT regulatory protein 97.4 0.0024 8.1E-08 45.9 10.6 135 4-138 23-195 (373)
118 1a17_A Serine/threonine protei 97.4 0.00071 2.4E-08 42.5 7.0 88 31-138 14-102 (166)
119 3ulq_A Response regulator aspa 97.4 0.0017 5.8E-08 47.0 9.8 133 3-138 192-360 (383)
120 2xcb_A PCRH, regulatory protei 97.4 0.0026 9E-08 39.4 9.5 88 4-111 27-115 (142)
121 2kck_A TPR repeat; tetratricop 97.4 0.0015 5.1E-08 38.0 7.8 89 31-138 7-98 (112)
122 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0034 1.2E-07 39.8 9.8 88 4-111 20-108 (164)
123 3q15_A PSP28, response regulat 97.3 0.00063 2.2E-08 49.3 7.0 132 4-138 191-357 (378)
124 1qqe_A Vesicular transport pro 97.3 0.0042 1.4E-07 43.5 11.0 133 4-138 86-261 (292)
125 2vgx_A Chaperone SYCD; alterna 97.3 0.0033 1.1E-07 39.6 9.5 87 5-111 31-118 (148)
126 4b4t_Q 26S proteasome regulato 97.3 0.00097 3.3E-08 48.8 7.9 135 4-138 13-196 (434)
127 1wao_1 Serine/threonine protei 97.3 0.0013 4.4E-08 49.7 8.6 115 4-138 15-131 (477)
128 1hz4_A MALT regulatory protein 97.3 0.0018 6E-08 46.6 8.9 135 4-138 102-274 (373)
129 2dba_A Smooth muscle cell asso 97.3 0.0087 3E-07 36.6 10.9 92 4-118 37-133 (148)
130 1elw_A TPR1-domain of HOP; HOP 97.3 0.0054 1.9E-07 35.7 9.5 89 3-111 12-101 (118)
131 3q49_B STIP1 homology and U bo 97.2 0.0028 9.6E-08 38.6 8.3 88 4-111 18-106 (137)
132 3qky_A Outer membrane assembly 97.2 0.0021 7E-08 44.0 8.3 113 3-117 60-228 (261)
133 3u3w_A Transcriptional activat 97.2 0.0023 7.8E-08 44.7 8.7 106 4-109 124-264 (293)
134 1elw_A TPR1-domain of HOP; HOP 97.2 0.0027 9.2E-08 37.1 7.9 90 29-138 3-93 (118)
135 4gco_A Protein STI-1; structur 97.2 0.0027 9.2E-08 38.8 7.6 88 31-138 14-102 (126)
136 2fbn_A 70 kDa peptidylprolyl i 97.2 0.0016 5.5E-08 42.7 6.9 113 4-137 47-176 (198)
137 1p5q_A FKBP52, FK506-binding p 97.1 0.0014 4.7E-08 47.1 6.9 56 82-138 196-251 (336)
138 3gyz_A Chaperone protein IPGC; 97.1 0.0013 4.3E-08 42.0 6.1 56 81-138 69-125 (151)
139 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0063 2.1E-07 42.5 9.8 124 4-127 124-286 (293)
140 2xev_A YBGF; tetratricopeptide 97.0 0.004 1.4E-07 37.4 7.5 94 4-118 11-110 (129)
141 4f3v_A ESX-1 secretion system 97.0 0.007 2.4E-07 42.7 9.4 108 3-112 110-238 (282)
142 1hxi_A PEX5, peroxisome target 97.0 0.0047 1.6E-07 37.4 7.6 88 4-111 26-114 (121)
143 2vgx_A Chaperone SYCD; alterna 97.0 0.0024 8.2E-08 40.2 6.2 88 30-138 21-110 (148)
144 3rjv_A Putative SEL1 repeat pr 96.9 0.039 1.3E-06 36.6 12.7 129 4-138 27-189 (212)
145 3q49_B STIP1 homology and U bo 96.9 0.0039 1.3E-07 37.9 6.8 91 28-138 7-98 (137)
146 3qou_A Protein YBBN; thioredox 96.9 0.011 3.8E-07 41.3 9.8 123 27-150 114-265 (287)
147 2xm6_A Protein corresponding t 96.9 0.054 1.8E-06 40.5 14.0 125 8-138 56-208 (490)
148 3upv_A Heat shock protein STI1 96.9 0.0039 1.3E-07 37.5 6.4 89 30-138 4-93 (126)
149 2e2e_A Formate-dependent nitri 96.9 0.0023 7.7E-08 41.0 5.5 97 40-138 20-136 (177)
150 2yhc_A BAMD, UPF0169 lipoprote 96.8 0.026 8.8E-07 37.7 10.8 110 3-112 49-214 (225)
151 3urz_A Uncharacterized protein 96.8 0.013 4.6E-07 38.7 9.2 116 4-122 63-195 (208)
152 3sz7_A HSC70 cochaperone (SGT) 96.8 0.0039 1.3E-07 39.5 6.4 90 29-138 10-100 (164)
153 2xcb_A PCRH, regulatory protei 96.8 0.004 1.4E-07 38.6 6.3 87 32-138 20-107 (142)
154 4b4t_Q 26S proteasome regulato 96.8 0.016 5.6E-07 42.2 10.4 136 3-138 63-237 (434)
155 3ro3_A PINS homolog, G-protein 96.8 0.0038 1.3E-07 38.5 6.1 95 31-138 10-110 (164)
156 2xm6_A Protein corresponding t 96.7 0.075 2.6E-06 39.7 13.7 15 95-109 272-286 (490)
157 2dba_A Smooth muscle cell asso 96.7 0.03 1E-06 34.1 9.7 60 28-89 26-92 (148)
158 4g1t_A Interferon-induced prot 96.7 0.039 1.3E-06 40.6 11.6 42 96-138 227-268 (472)
159 1kt0_A FKBP51, 51 kDa FK506-bi 96.7 0.0097 3.3E-07 44.6 8.3 114 4-138 277-406 (457)
160 1ihg_A Cyclophilin 40; ppiase 96.6 0.011 3.6E-07 43.2 8.1 113 4-137 232-361 (370)
161 3rkv_A Putative peptidylprolyl 96.6 0.02 7E-07 36.0 8.5 94 4-118 20-131 (162)
162 3qwp_A SET and MYND domain-con 96.6 0.014 4.6E-07 43.6 8.6 96 3-109 295-398 (429)
163 1elr_A TPR2A-domain of HOP; HO 96.5 0.006 2.1E-07 36.3 5.5 90 30-138 4-100 (131)
164 2fbn_A 70 kDa peptidylprolyl i 96.5 0.016 5.3E-07 37.8 7.6 123 8-138 17-143 (198)
165 2c2l_A CHIP, carboxy terminus 96.5 0.018 6.3E-07 40.0 8.2 77 3-80 12-92 (281)
166 3qww_A SET and MYND domain-con 96.4 0.019 6.4E-07 43.0 8.6 92 7-109 310-409 (433)
167 2l6j_A TPR repeat-containing p 96.4 0.0097 3.3E-07 34.5 5.5 89 28-137 2-98 (111)
168 2l6j_A TPR repeat-containing p 96.3 0.021 7.3E-07 33.0 6.8 48 4-52 13-60 (111)
169 3k9i_A BH0479 protein; putativ 96.3 0.02 6.8E-07 34.0 6.7 57 81-138 26-82 (117)
170 2if4_A ATFKBP42; FKBP-like, al 96.2 0.0081 2.8E-07 43.1 5.4 86 4-110 188-292 (338)
171 4gcn_A Protein STI-1; structur 96.2 0.015 5.2E-07 35.4 6.0 88 32-138 10-104 (127)
172 4g1t_A Interferon-induced prot 96.1 0.033 1.1E-06 41.0 8.4 130 8-138 226-393 (472)
173 2xev_A YBGF; tetratricopeptide 96.1 0.049 1.7E-06 32.4 7.9 54 83-138 40-97 (129)
174 3n71_A Histone lysine methyltr 96.1 0.016 5.6E-07 44.0 6.7 99 40-138 319-456 (490)
175 2r5s_A Uncharacterized protein 96.0 0.021 7.3E-07 36.5 6.3 104 3-109 48-171 (176)
176 2hr2_A Hypothetical protein; a 96.0 0.1 3.4E-06 33.6 9.2 107 4-122 20-147 (159)
177 1na3_A Designed protein CTPR2; 95.8 0.07 2.4E-06 29.5 7.2 53 85-138 12-64 (91)
178 2kat_A Uncharacterized protein 95.7 0.09 3.1E-06 30.8 7.8 79 12-110 2-81 (115)
179 3ma5_A Tetratricopeptide repea 95.7 0.065 2.2E-06 30.9 7.0 55 83-138 8-62 (100)
180 1klx_A Cysteine rich protein B 95.7 0.14 4.8E-06 31.5 8.9 104 4-112 4-127 (138)
181 2c2l_A CHIP, carboxy terminus 95.7 0.034 1.2E-06 38.7 6.5 82 29-110 3-100 (281)
182 1hxi_A PEX5, peroxisome target 95.6 0.025 8.5E-07 34.1 5.0 56 81-138 50-106 (121)
183 3rjv_A Putative SEL1 repeat pr 95.6 0.13 4.4E-06 34.0 8.8 123 12-138 3-150 (212)
184 1na3_A Designed protein CTPR2; 95.3 0.058 2E-06 29.8 5.7 63 30-111 9-72 (91)
185 3ma5_A Tetratricopeptide repea 95.0 0.18 6.1E-06 29.0 7.4 24 29-52 6-29 (100)
186 2if4_A ATFKBP42; FKBP-like, al 94.8 0.19 6.5E-06 35.9 8.3 101 30-138 179-285 (338)
187 3rkv_A Putative peptidylprolyl 94.7 0.22 7.7E-06 31.0 7.8 99 31-138 12-118 (162)
188 1kt0_A FKBP51, 51 kDa FK506-bi 94.3 0.16 5.5E-06 37.9 7.2 56 82-138 317-372 (457)
189 2kat_A Uncharacterized protein 94.2 0.1 3.6E-06 30.5 5.0 57 81-138 18-74 (115)
190 1ihg_A Cyclophilin 40; ppiase 94.2 0.6 2.1E-05 33.8 9.9 98 31-138 224-328 (370)
191 4e6h_A MRNA 3'-END-processing 94.2 0.67 2.3E-05 36.7 10.7 134 5-138 388-562 (679)
192 4e6h_A MRNA 3'-END-processing 94.1 1.1 3.9E-05 35.4 11.8 120 6-128 445-585 (679)
193 3qwp_A SET and MYND domain-con 93.8 0.18 6.3E-06 37.5 6.6 58 81-138 328-392 (429)
194 3qww_A SET and MYND domain-con 93.8 0.33 1.1E-05 36.3 7.9 58 81-138 339-403 (433)
195 1wao_1 Serine/threonine protei 93.4 0.76 2.6E-05 34.5 9.5 77 3-80 48-130 (477)
196 1v54_E Cytochrome C oxidase po 93.1 0.51 1.7E-05 27.9 6.3 59 10-68 25-87 (109)
197 3mkq_A Coatomer beta'-subunit; 93.0 0.13 4.5E-06 40.6 5.0 90 6-108 610-707 (814)
198 4f3v_A ESX-1 secretion system 92.8 0.25 8.4E-06 34.8 5.6 103 36-138 108-229 (282)
199 3mkq_B Coatomer subunit alpha; 92.6 1.4 4.7E-05 28.8 8.5 93 5-107 15-114 (177)
200 3e4b_A ALGK; tetratricopeptide 92.2 2.7 9.2E-05 31.1 12.4 103 5-109 186-314 (452)
201 3mkq_A Coatomer beta'-subunit; 92.1 1.3 4.6E-05 34.8 9.7 24 29-52 680-703 (814)
202 2hr2_A Hypothetical protein; a 92.0 0.4 1.4E-05 30.7 5.4 93 32-138 13-123 (159)
203 3e4b_A ALGK; tetratricopeptide 91.9 2.6 9E-05 31.2 10.6 48 81-129 175-225 (452)
204 2v5f_A Prolyl 4-hydroxylase su 91.6 0.53 1.8E-05 27.3 5.4 49 4-52 14-68 (104)
205 2y69_E Cytochrome C oxidase su 90.8 1.2 4E-05 27.9 6.3 56 12-67 70-129 (152)
206 2ff4_A Probable regulatory pro 90.6 0.67 2.3E-05 34.0 6.2 58 65-122 176-250 (388)
207 3lvg_A Clathrin heavy chain 1; 90.1 0.018 6.1E-07 44.0 -2.6 130 2-138 90-250 (624)
208 2kc7_A BFR218_protein; tetratr 89.9 0.53 1.8E-05 26.4 4.2 48 4-52 9-57 (99)
209 1zu2_A Mitochondrial import re 89.6 0.98 3.4E-05 28.9 5.6 102 6-129 13-136 (158)
210 2kc7_A BFR218_protein; tetratr 89.4 1.7 5.9E-05 24.1 6.6 29 84-112 37-65 (99)
211 3ly7_A Transcriptional activat 87.6 5.5 0.00019 29.1 9.0 56 81-138 276-331 (372)
212 2uy1_A Cleavage stimulation fa 86.2 4.9 0.00017 30.3 8.4 122 6-130 297-449 (493)
213 2ff4_A Probable regulatory pro 85.7 1.8 6.1E-05 31.7 5.7 59 3-62 179-247 (388)
214 1pc2_A Mitochondria fission pr 85.0 5.4 0.00019 25.2 7.8 90 7-117 10-104 (152)
215 3lpz_A GET4 (YOR164C homolog); 84.6 9.3 0.00032 27.5 10.1 42 86-131 140-181 (336)
216 3dra_A Protein farnesyltransfe 83.4 9.7 0.00033 26.9 12.5 129 9-138 124-279 (306)
217 2v5f_A Prolyl 4-hydroxylase su 83.2 4 0.00014 23.4 5.5 75 28-119 3-81 (104)
218 4gns_B Protein CSD3, chitin bi 82.5 10 0.00034 30.6 9.0 104 6-109 259-398 (754)
219 1wy6_A Hypothetical protein ST 81.7 3.4 0.00012 26.1 4.8 48 4-52 100-147 (172)
220 1wy6_A Hypothetical protein ST 81.3 8.1 0.00028 24.4 10.1 124 6-138 18-146 (172)
221 3bee_A Putative YFRE protein; 80.4 6 0.0002 22.4 6.1 31 82-112 43-73 (93)
222 4fhn_B Nucleoporin NUP120; pro 79.3 9 0.00031 32.2 8.1 135 4-138 851-1041(1139)
223 2b7e_A PRE-mRNA processing pro 78.3 1.2 4E-05 23.5 1.7 37 11-47 2-39 (59)
224 1dce_A Protein (RAB geranylger 77.8 22 0.00074 27.4 11.2 122 11-135 89-244 (567)
225 4b4t_P 26S proteasome regulato 77.3 9.3 0.00032 28.5 7.0 130 9-138 30-198 (445)
226 3mkq_B Coatomer subunit alpha; 76.1 7.4 0.00025 25.3 5.4 95 37-138 12-110 (177)
227 3u64_A Protein TP_0956; tetrat 75.1 13 0.00045 26.3 6.8 58 81-138 198-261 (301)
228 1v54_E Cytochrome C oxidase po 72.9 7.1 0.00024 23.1 4.2 44 81-125 44-87 (109)
229 4fhn_B Nucleoporin NUP120; pro 72.1 13 0.00045 31.3 7.2 74 63-138 902-992 (1139)
230 3u64_A Protein TP_0956; tetrat 71.0 22 0.00075 25.2 7.1 63 60-122 199-282 (301)
231 2o03_A Probable zinc uptake re 70.1 8.3 0.00028 23.4 4.4 50 87-136 15-64 (131)
232 4b4t_P 26S proteasome regulato 69.9 18 0.00063 26.9 7.0 103 3-107 145-263 (445)
233 1oai_A Nuclear RNA export fact 69.6 4.3 0.00015 21.2 2.6 25 94-118 32-57 (59)
234 4b4t_R RPN7, 26S proteasome re 67.6 34 0.0012 25.2 9.9 91 3-111 139-237 (429)
235 1pc2_A Mitochondria fission pr 67.2 16 0.00055 23.0 5.4 56 4-60 41-104 (152)
236 3lvg_A Clathrin heavy chain 1; 66.2 1.2 4E-05 34.3 -0.1 78 59-138 53-137 (624)
237 3ly7_A Transcriptional activat 65.8 15 0.0005 26.9 5.6 54 27-80 274-330 (372)
238 1dce_A Protein (RAB geranylger 62.5 51 0.0017 25.3 8.4 115 11-129 45-190 (567)
239 1zbp_A Hypothetical protein VP 62.5 22 0.00076 24.8 5.7 29 81-109 30-58 (273)
240 3bee_A Putative YFRE protein; 62.0 19 0.00064 20.2 6.2 54 83-138 7-64 (93)
241 3mwm_A ZUR, putative metal upt 61.9 9.1 0.00031 23.5 3.5 50 87-136 18-67 (139)
242 1klx_A Cysteine rich protein B 61.3 24 0.00081 21.1 6.8 55 81-138 56-118 (138)
243 2fe3_A Peroxide operon regulat 60.5 11 0.00038 23.3 3.7 50 87-136 26-75 (145)
244 3qil_A Clathrin heavy chain 1; 60.0 21 0.00071 21.7 4.6 48 2-52 39-86 (125)
245 2o03_A Probable zinc uptake re 59.6 11 0.00039 22.7 3.6 46 2-47 17-62 (131)
246 2p58_C Putative type III secre 57.8 27 0.00092 20.7 5.8 85 10-121 22-107 (116)
247 2uy1_A Cleavage stimulation fa 57.1 59 0.002 24.4 9.9 19 6-24 224-242 (493)
248 2xig_A Ferric uptake regulatio 55.9 14 0.00048 23.0 3.6 50 87-136 31-80 (150)
249 1mzb_A Ferric uptake regulatio 55.8 11 0.00037 23.0 3.1 50 87-136 22-72 (136)
250 3mv2_A Coatomer subunit alpha; 54.8 56 0.0019 23.4 10.0 123 5-130 124-256 (325)
251 1zbp_A Hypothetical protein VP 54.8 51 0.0018 23.0 8.9 108 3-111 5-129 (273)
252 3mwm_A ZUR, putative metal upt 54.3 9.8 0.00033 23.4 2.7 46 2-47 20-65 (139)
253 2fu4_A Ferric uptake regulatio 52.9 11 0.00038 20.5 2.6 49 87-135 21-70 (83)
254 2uwj_G Type III export protein 52.6 34 0.0012 20.2 7.7 85 10-121 21-106 (115)
255 2f40_A Hypothetical protein PF 51.6 0.95 3.3E-05 25.7 -2.1 32 45-76 19-50 (96)
256 2w57_A Ferric uptake regulatio 49.9 15 0.00052 22.9 3.0 50 87-136 21-71 (150)
257 3bu8_A Telomeric repeat-bindin 49.1 30 0.001 23.4 4.4 25 87-111 119-143 (235)
258 1zl8_A LIN-7; heterodimer, alp 48.7 10 0.00034 19.1 1.6 22 9-30 7-28 (53)
259 1y8m_A FIS1; mitochondria, unk 48.0 41 0.0014 21.0 4.7 16 65-80 82-97 (144)
260 3eiq_C Programmed cell death p 47.3 79 0.0027 22.9 6.8 29 82-110 217-245 (358)
261 2fe3_A Peroxide operon regulat 47.1 16 0.00053 22.6 2.8 61 19-80 11-76 (145)
262 2dod_A Transcription elongatio 47.0 19 0.00063 20.2 2.8 38 10-47 15-52 (82)
263 2xig_A Ferric uptake regulatio 45.9 16 0.00054 22.7 2.7 63 17-80 14-81 (150)
264 2zu6_B Programmed cell death p 45.5 54 0.0019 23.2 5.6 28 82-109 166-193 (307)
265 4ets_A Ferric uptake regulatio 45.2 20 0.0007 22.6 3.1 50 87-136 37-88 (162)
266 2jp7_A MRNA export factor MEX6 43.9 11 0.00038 19.5 1.4 21 10-31 34-54 (57)
267 1mzb_A Ferric uptake regulatio 43.7 14 0.00048 22.5 2.1 58 20-78 8-71 (136)
268 1zu2_A Mitochondrial import re 43.4 54 0.0019 20.7 4.9 57 10-68 61-132 (158)
269 3dra_A Protein farnesyltransfe 43.3 83 0.0028 22.0 14.7 31 81-111 143-175 (306)
270 1uzc_A Hypothetical protein FL 43.0 24 0.00082 19.1 2.7 38 10-47 13-50 (71)
271 2rg8_A Programmed cell death p 42.9 46 0.0016 21.1 4.5 24 2-25 17-40 (165)
272 2wpv_A GET4, UPF0363 protein Y 42.8 88 0.003 22.2 9.0 99 6-104 64-190 (312)
273 3eyy_A Putative iron uptake re 41.3 19 0.00066 22.2 2.5 47 88-135 24-70 (145)
274 2w57_A Ferric uptake regulatio 40.0 19 0.00064 22.4 2.3 58 20-78 7-70 (150)
275 2yru_A Steroid receptor RNA ac 38.5 37 0.0013 20.4 3.3 39 15-53 46-84 (118)
276 3o48_A Mitochondria fission 1 37.3 29 0.001 21.4 2.8 18 63-80 81-98 (134)
277 1ixm_A SPO0B, protein (sporula 37.1 41 0.0014 22.0 3.7 25 85-109 35-59 (192)
278 2wpv_A GET4, UPF0363 protein Y 35.9 1.2E+02 0.004 21.6 11.1 18 92-109 198-215 (312)
279 4ets_A Ferric uptake regulatio 35.9 21 0.00073 22.5 2.1 69 11-80 13-89 (162)
280 2ion_A PDCD4, programmed cell 35.7 80 0.0027 19.7 5.4 22 2-23 16-37 (152)
281 3eyy_A Putative iron uptake re 34.7 20 0.0007 22.1 1.8 20 59-78 51-70 (145)
282 3txn_A 26S proteasome regulato 34.3 1.4E+02 0.0047 22.0 9.6 51 2-52 106-161 (394)
283 4gns_B Protein CSD3, chitin bi 34.2 1.9E+02 0.0064 23.4 10.1 47 90-138 345-392 (754)
284 1dp3_A TRAM protein; helix-loo 34.0 15 0.00053 18.8 1.0 40 93-132 7-46 (55)
285 2y69_E Cytochrome C oxidase su 33.9 87 0.003 19.6 6.8 44 81-125 87-130 (152)
286 1k1a_A B-cell lymphoma 3-encod 33.9 32 0.0011 22.2 2.8 58 2-59 13-73 (241)
287 3kea_A K1L; tropism, ANK repea 32.8 29 0.001 23.6 2.6 35 23-57 52-87 (285)
288 3q7a_A Farnesyltransferase alp 32.5 1.4E+02 0.0048 21.5 12.4 122 9-132 68-216 (349)
289 2d2s_A Exocyst complex compone 32.4 1.2E+02 0.004 20.5 6.6 22 2-23 25-46 (235)
290 1wgl_A TOLL-interacting protei 31.8 27 0.00094 18.1 1.8 24 6-29 34-57 (59)
291 3q7a_A Farnesyltransferase alp 30.8 1.5E+02 0.0051 21.3 10.1 113 7-122 100-247 (349)
292 2of5_H Leucine-rich repeat and 28.5 85 0.0029 18.6 3.8 52 12-64 54-105 (118)
293 4b4t_R RPN7, 26S proteasome re 28.4 1.6E+02 0.0055 21.6 6.1 48 62-109 133-195 (429)
294 3lpz_A GET4 (YOR164C homolog); 27.9 1.7E+02 0.0058 21.0 10.6 62 19-80 83-156 (336)
295 3bqo_A Telomeric repeat-bindin 27.4 44 0.0015 22.2 2.5 21 3-23 125-145 (211)
296 2pk8_A Uncharacterized protein 26.6 64 0.0022 18.6 2.8 20 100-119 21-40 (103)
297 3ygs_P Procaspase 9; apoptosis 26.5 62 0.0021 18.4 2.9 38 96-137 51-88 (97)
298 2nsz_A Programmed cell death p 26.4 1.1E+02 0.0038 18.3 6.5 20 33-52 10-29 (129)
299 3cqc_A Nuclear pore complex pr 25.5 60 0.002 22.5 3.1 27 83-109 35-61 (270)
300 2etb_A Transient receptor pote 25.1 16 0.00054 24.2 0.1 55 3-58 7-72 (256)
301 2e2a_A Protein (enzyme IIA); h 24.3 56 0.0019 19.2 2.4 19 92-110 30-48 (105)
302 1wcr_A PTS system, N, N'-diace 24.2 56 0.0019 19.1 2.4 19 92-110 28-46 (103)
303 2r9g_A AAA ATPase, central reg 23.8 1.6E+02 0.0056 19.5 5.0 41 93-134 25-65 (204)
304 1z2z_A Probable tRNA pseudouri 23.7 2.3E+02 0.0079 21.1 7.9 83 8-96 191-289 (446)
305 2nxp_A Transcription initiatio 23.0 1.1E+02 0.0038 19.1 3.8 17 7-23 66-82 (156)
306 2bn5_A PSI; nuclear protein, s 22.8 65 0.0022 14.5 2.0 22 2-23 9-30 (33)
307 3dss_A Geranylgeranyl transfer 22.4 2.1E+02 0.0073 20.3 10.8 54 59-112 107-175 (331)
308 3bge_A Predicted ATPase; struc 22.4 1.8E+02 0.006 19.3 5.3 42 93-134 18-59 (201)
309 2j4b_A TAF5, transcription ini 21.9 1.4E+02 0.0049 18.2 4.1 19 6-24 46-64 (138)
310 2hm2_Q ASC2, pyrin-only protei 21.2 68 0.0023 17.9 2.3 34 76-109 44-77 (89)
311 1nzn_A CGI-135 protein, fissio 20.7 1.5E+02 0.0052 17.9 8.0 87 11-116 17-106 (126)
312 3jxi_A Vanilloid receptor-rela 20.4 36 0.0012 22.4 1.1 50 3-52 10-68 (260)
313 3ctd_A Putative ATPase, AAA fa 20.2 2E+02 0.0069 19.2 5.3 42 93-134 46-87 (213)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6e-34 Score=216.57 Aligned_cols=152 Identities=16% Similarity=0.099 Sum_probs=144.0
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc---------hHHHHHH-----hhhhhcchhhHHHH
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA---------WILAKEL-----QIELDLSSYSLSSK 66 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~-----~~~~~~~~~~~~~l 66 (153)
+|++|++.|++++|.++|++|++.|++||..|||++|.+|++.+. ++.|.++ ..|+.||..+||+|
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~l 111 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNG 111 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 378999999999999999999999999999999999999987664 6777777 77899999999999
Q ss_pred HHHHHhcCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 67 TSRYAHSGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 67 l~~~~~~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
|.+|++.|++++|. |..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~ 191 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNA 191 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCH
Confidence 99999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred ccchh------------HHHHHHHHHHHhhc
Q 039275 134 DFGKS------------NIFLTTAIIEMYAK 152 (153)
Q Consensus 134 ~~a~~------------~~~~~~~li~~y~k 152 (153)
++|.+ +..+|++|++.|++
T Consensus 192 d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 192 DKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99998 88999999998875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-27 Score=181.80 Aligned_cols=138 Identities=12% Similarity=0.067 Sum_probs=127.4
Q ss_pred ChhhHhhcCC---------hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHH
Q 039275 1 MISGYSQAGR---------FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSK 66 (153)
Q Consensus 1 li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~l 66 (153)
||++|++.+. +++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++ ..|+.||..+||+|
T Consensus 67 Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 67 LLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp HHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 4667776654 688999999999999999999999999999999999999999 77899999999999
Q ss_pred HHHHHhcCCccccc-------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 67 TSRYAHSGRIRLAR-------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 67 l~~~~~~g~~~~a~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
|.+|++.|++++|. |..||++||.+|++.|++++|.++|++|++.|+.|+..||+.++.+|+..+..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~ 226 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVAT 226 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcch
Confidence 99999999999998 99999999999999999999999999999999999999999999999986655
Q ss_pred ccchh
Q 039275 134 DFGKS 138 (153)
Q Consensus 134 ~~a~~ 138 (153)
+.+..
T Consensus 227 ~~g~~ 231 (501)
T 4g26_A 227 KTGVK 231 (501)
T ss_dssp TCCBS
T ss_pred hhhhh
Confidence 55444
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.85 E-value=2e-22 Score=160.69 Aligned_cols=116 Identities=10% Similarity=0.009 Sum_probs=97.8
Q ss_pred ChhhHhhcCChhHHHHHHHHhH---HcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHh
Q 039275 1 MISGYSQAGRFNEALEPFGKLE---SLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAH 72 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~ 72 (153)
||++||+.|++++|.++|++|. +.|+.||++|||+||++|++.|++++|.++ ..|+.|
T Consensus 133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-------------- 198 (1134)
T 3spa_A 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-------------- 198 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--------------
Confidence 4788999999999999998775 458899999999999999999999999998 677788
Q ss_pred cCCccccchHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 73 SGRIRLARDPVSCKAMISGYSQAGRF-NEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 73 ~g~~~~a~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|..|||+||.++|+.|+. ++|.++|++|.+.|+.||..||+++++++.+.+-++..++
T Consensus 199 --------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 199 --------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp --------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred --------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 558888899999999985 7899999999999999999999988877766555544443
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=143.67 Aligned_cols=102 Identities=13% Similarity=0.144 Sum_probs=87.6
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHHh--------hhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKELQ--------IELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNE 100 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~~--------~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~ 100 (153)
-..|||++|++|++.|++++|.++. .|+.| |..|||+||.|||+.|++++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P----------------------dvvTYNtLI~Glck~G~~~e 183 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL----------------------TLDMYNAVMLGWARQGAFKE 183 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC----------------------CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC----------------------CHhHHHHHHHHHHhCCCHHH
Confidence 4578999999999999999998882 35566 56889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc-ccchh------------HHHHHHHHHHHhhc
Q 039275 101 ALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL-DFGKS------------NIFLTTAIIEMYAK 152 (153)
Q Consensus 101 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~------------~~~~~~~li~~y~k 152 (153)
|.++|++|++.|++||..||+++|+++|+.|+. +.|.+ |..+|++++..+.|
T Consensus 184 A~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 184 LVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 999999999999999999999999999999985 56655 88999977766543
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.58 E-value=2.1e-14 Score=109.95 Aligned_cols=149 Identities=15% Similarity=0.036 Sum_probs=111.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h---hhhhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q---IELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~---~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|.+.|+++.+. -+.+..+|+.+...+.+.|++++|.++ + ...+.+..+|+.+..+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHH
Confidence 4667777777777777777653 223566777777777777777777777 1 1123366677778888888888777
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHhcCCCccccchh--
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHTD--EVTMVVVLAASSGPGALDFGKS-- 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~-- 138 (153)
|. +..+|+.+...+.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+
T Consensus 460 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~ 539 (597)
T 2xpi_A 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539 (597)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 77 6778888888888888888888888888765 67787 6788888888888888888887
Q ss_pred ---------HHHHHHHHHHHhhc
Q 039275 139 ---------NIFLTTAIIEMYAK 152 (153)
Q Consensus 139 ---------~~~~~~~li~~y~k 152 (153)
+..+|..+...|.+
T Consensus 540 ~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 540 NQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHH
Confidence 56777777777654
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.6e-14 Score=110.57 Aligned_cols=148 Identities=10% Similarity=0.039 Sum_probs=99.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|.++|+++.+.+ +.+..+++.++.++.+.|++++|.++ ....+.+..+++.+..+|.+.|++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHH
Confidence 34555555555555555555433 22444555555555555555555555 11123355677777788888888877
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh--------
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------- 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------- 138 (153)
|. +..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.+
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77 56688888888888888888888888887553 3467778888888888888888877
Q ss_pred ---HHHHHHHHHHHhhc
Q 039275 139 ---NIFLTTAIIEMYAK 152 (153)
Q Consensus 139 ---~~~~~~~li~~y~k 152 (153)
+..+|+.+...|.+
T Consensus 471 ~~~~~~~~~~l~~~~~~ 487 (597)
T 2xpi_A 471 FQYDPLLLNELGVVAFN 487 (597)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHH
Confidence 56777777777764
No 7
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.18 E-value=6.8e-12 Score=93.57 Aligned_cols=126 Identities=10% Similarity=0.064 Sum_probs=47.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc--
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR-- 80 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-- 80 (153)
+++.+.|++++|++.++..++. .+++.+.+.++.+|.+.|+++++.++..+ |+..+|+.+...|...|.+++|.
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp ------------------------------------------CHHHHTTTTTC--C----------------CTTTHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455566666666644433332 34456666666666666666666666332 45556666666666666666666
Q ss_pred --hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 --DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
....|..|..++.+.|++++|.+.+.+. -+..+|..++.+|...|+++.|..
T Consensus 145 Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 145 YNNVSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp HHHTTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH
Confidence 5566777777777777777777777766 256677777777777777777766
No 8
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.17 E-value=2.6e-11 Score=90.47 Aligned_cols=137 Identities=12% Similarity=0.105 Sum_probs=47.8
Q ss_pred ChhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcc
Q 039275 1 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 1 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|.+. -..-.++..+.+.|+.+|.+.|+++
T Consensus 38 La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence 34678899999999999965 37888999999999999999999998 1112455788999999999999999
Q ss_pred ccc------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh------HHHHHHH
Q 039275 78 LAR------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS------NIFLTTA 145 (153)
Q Consensus 78 ~a~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~------~~~~~~~ 145 (153)
++. +..+|+.+...|...|++++|..+|..+ ..|..+.+++.++|+++.|.+ ++.+|..
T Consensus 112 e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~ 182 (449)
T 1b89_A 112 ELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 182 (449)
T ss_dssp HHTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHH
Confidence 988 5679999999999999999999999977 479999999999999999999 8999999
Q ss_pred HHHHhhc
Q 039275 146 IIEMYAK 152 (153)
Q Consensus 146 li~~y~k 152 (153)
++.+|..
T Consensus 183 v~~aCv~ 189 (449)
T 1b89_A 183 VCFACVD 189 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888864
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.07 E-value=4.4e-09 Score=77.72 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=118.2
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|++.|+++.+. .+.+...+..+..++.+.|++++|.+. .. .. +.+...+..+...|.+.|++++
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 112 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDE 112 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 4678899999999999999765 345788899999999999999999998 21 12 3345678889999999999999
Q ss_pred cc------------hH---HHHHHHHHH------------HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 79 AR------------DP---VSCKAMISG------------YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 79 a~------------~~---~~~~~li~~------------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
|. +. ..|..+... +...|++++|.+.|+++.+.. ..+...+..+..++.+.|
T Consensus 113 A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 191 (450)
T 2y4t_A 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEG 191 (450)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence 98 33 666666444 899999999999999998653 346778888999999999
Q ss_pred ccccchh-----------HHHHHHHHHHHhhc
Q 039275 132 ALDFGKS-----------NIFLTTAIIEMYAK 152 (153)
Q Consensus 132 ~~~~a~~-----------~~~~~~~li~~y~k 152 (153)
++++|.+ +...|..+...|.+
T Consensus 192 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 192 EPRKAISDLKAASKLKNDNTEAFYKISTLYYQ 223 (450)
T ss_dssp CGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999988 56677777766653
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.07 E-value=2.5e-09 Score=75.91 Aligned_cols=146 Identities=12% Similarity=0.037 Sum_probs=108.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHH-HHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc-
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTM-VVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~- 80 (153)
..+.+.|+.++|++.++++...+..|+...+ ..+-..+.+.|++++|.+.-.. +.+...+..+...|.+.|++++|.
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4567788899999999999887766654444 4444788899999999998333 566778888889999999999988
Q ss_pred --------h-HHHHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh---------
Q 039275 81 --------D-PVSCK----AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------- 138 (153)
Q Consensus 81 --------~-~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--------- 138 (153)
+ ..+.. ..+..+...|++++|..+|+++.+. ...+...++.+-.++.+.|++++|..
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 11112 2233344558999999999999876 34577788888899999999999988
Q ss_pred --HHHHHHHHHHHh
Q 039275 139 --NIFLTTAIIEMY 150 (153)
Q Consensus 139 --~~~~~~~li~~y 150 (153)
++.++..++..+
T Consensus 231 p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 231 SGHPETLINLVVLS 244 (291)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 555666655444
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.06 E-value=5.8e-09 Score=75.94 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 61 YSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 61 ~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
.++..+...|.+.|++++|. +..+|..+...+.+.|++++|.+.|+++.+.. .++..++..+...+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 34444445555555555444 33445555555555555555555555554332 224444555555555
Q ss_pred CCCccccchh
Q 039275 129 GPGALDFGKS 138 (153)
Q Consensus 129 ~~g~~~~a~~ 138 (153)
+.|++++|.+
T Consensus 317 ~~g~~~~A~~ 326 (388)
T 1w3b_A 317 EQGNIEEAVR 326 (388)
T ss_dssp TTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 5555555544
No 12
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.01 E-value=1.8e-08 Score=73.36 Aligned_cols=145 Identities=13% Similarity=0.041 Sum_probs=100.2
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
|.+.|++++|.+.|+++.+. -+-+..+|..+-..+.+.|++++|.+. +. ...| +...+..+-..+...|++++|.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 44556666666666666553 122355666666666777777766666 11 1222 2345666667777777777776
Q ss_pred ------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh---------
Q 039275 81 ------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS--------- 138 (153)
Q Consensus 81 ------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~--------- 138 (153)
+..+|..+...+.+.|++++|.+.|+++.+.. | +..++..+...+.+.|++++|.+
T Consensus 224 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 56788888999999999999999999988653 4 45678888899999999999888
Q ss_pred --HHHHHHHHHHHhhc
Q 039275 139 --NIFLTTAIIEMYAK 152 (153)
Q Consensus 139 --~~~~~~~li~~y~k 152 (153)
+..+++.+...|.+
T Consensus 302 p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 302 PTHADSLNNLANIKRE 317 (388)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH
Confidence 55667777666543
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.99 E-value=1.3e-08 Score=75.16 Aligned_cols=145 Identities=11% Similarity=0.011 Sum_probs=102.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h---hhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q---IELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~---~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|+++.+. .+.+...+..+...+.+.|++++|.+. . ...+.+..++..+...|.+.|++++|
T Consensus 152 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 152 NAFGSGDYTAAIAFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 367788888888888888764 234677778888888888888888887 1 11234566788888888888888888
Q ss_pred c------------hHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHhcCC
Q 039275 80 R------------DPVSCKAM------------ISGYSQAGRFNEALEPFGKLESLGVHTD-----EVTMVVVLAASSGP 130 (153)
Q Consensus 80 ~------------~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~ 130 (153)
. +...+..+ ...+.+.|++++|.+.|+++... .|+ ...+..+...+.+.
T Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 231 LSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC
Confidence 7 33344443 67778888888888888888763 354 34677777888888
Q ss_pred Cccccchh-----------HHHHHHHHHHHhh
Q 039275 131 GALDFGKS-----------NIFLTTAIIEMYA 151 (153)
Q Consensus 131 g~~~~a~~-----------~~~~~~~li~~y~ 151 (153)
|++++|.+ +...|..+...|.
T Consensus 309 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 88888877 4455555555543
No 14
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.93 E-value=3.5e-08 Score=67.26 Aligned_cols=132 Identities=16% Similarity=0.139 Sum_probs=78.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhcc--------hhhHHHHHHHHHh
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDLS--------SYSLSSKTSRYAH 72 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~--------~~~~~~ll~~~~~ 72 (153)
.+.+.|++++|++.|++..+.. ++...+..+-..+...|++++|.+. . ....|+ ...+..+...|.+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK 91 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH
Confidence 4556677777777777766655 5666666666666777777766666 1 111121 3555666666666
Q ss_pred cCCccccc--------------------------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039275 73 SGRIRLAR--------------------------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114 (153)
Q Consensus 73 ~g~~~~a~--------------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 114 (153)
.|++++|. +...|..+...+...|++++|.+.|++..... .
T Consensus 92 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 170 (258)
T 3uq3_A 92 LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-P 170 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred cccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-c
Confidence 66666665 23345555556666666666666666665443 2
Q ss_pred CChhhHHHHHHHhcCCCccccchh
Q 039275 115 TDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 115 p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+...+..+...+.+.|++++|.+
T Consensus 171 ~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 171 EDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCHHHHHH
Confidence 244556666666666666666665
No 15
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.89 E-value=6.3e-08 Score=66.15 Aligned_cols=132 Identities=10% Similarity=-0.044 Sum_probs=59.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh----hhc-chhhHHHHHHHHHhcCCccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE----LDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~----~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.++ ..- ..| +...+..+...+.+.|++++
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 344455555555554444331 12334444444444455555555544 111 111 22334444445555555554
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|+.++|.+
T Consensus 160 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 160 AKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHH
Confidence 44 34444455555555555555555555544321 1233344444445555555555544
No 16
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.86 E-value=5.6e-08 Score=65.81 Aligned_cols=132 Identities=14% Similarity=0.010 Sum_probs=100.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhc------
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHS------ 73 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~------ 73 (153)
.+.+.|++++|+..|++..+. -+.+...+..+-..+.+.|++++|... +. ...| +...+..+-..+.+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 92 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAED 92 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 567888999999999888764 234566777777788888888888887 22 2334 334666777777777
Q ss_pred -----CCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 74 -----GRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 74 -----g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
|++++|. +...|..+-..+...|++++|.+.|++..+.. .+...+..+-.++...|++++|
T Consensus 93 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A 170 (217)
T 2pl2_A 93 RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEA 170 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHH
Confidence 8888887 56677777788888888888888888887766 6777778888888888888888
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
..
T Consensus 171 ~~ 172 (217)
T 2pl2_A 171 LA 172 (217)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.83 E-value=1e-07 Score=68.66 Aligned_cols=76 Identities=12% Similarity=-0.047 Sum_probs=38.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhh-cchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELD-LSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~-~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|+++.+.. +.+...+..+-..+.+.|++++|.+. .. ... .+...+..+...|.+.|++++|
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 152 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHH
Confidence 3455556666666666555432 23445555555555555655555555 11 111 2234455555555555555554
Q ss_pred c
Q 039275 80 R 80 (153)
Q Consensus 80 ~ 80 (153)
.
T Consensus 153 ~ 153 (365)
T 4eqf_A 153 C 153 (365)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.83 E-value=1.1e-07 Score=64.41 Aligned_cols=133 Identities=11% Similarity=-0.014 Sum_probs=93.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h---hhhhcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q---IELDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~---~~~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+. . ...+.+...+..+...+.+.|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence 5667778888888887776542 33566677777777777888887777 1 11223455667777777888887777
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...|..+...+.+.|++++|.+.|++..+.. ..+..++..+...+.+.|++++|.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 145 LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHH
Confidence 7 56677777778888888888888888776543 2345667777778888888887776
No 19
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.83 E-value=5.2e-08 Score=62.98 Aligned_cols=134 Identities=16% Similarity=0.074 Sum_probs=110.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..+...|++++|.+.|+++.+. .+.+...+..+...+...|++++|.+. .. .. +.+...+..+...+...|++++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHH
Confidence 3577889999999999988764 335678888888999999999999998 22 12 3356678888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.+++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 95 A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 95 AVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88 67788888899999999999999999988664 3356788889999999999999887
No 20
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.82 E-value=1.1e-07 Score=62.11 Aligned_cols=133 Identities=17% Similarity=0.055 Sum_probs=108.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh-cchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD-LSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~-~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|++++|++.|++..+.. +-+...+..+-..+.+.|++++|.+. -.... .+...+..+...+...++++.+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 92 (184)
T 3vtx_A 14 KKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAA 92 (184)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHH
Confidence 5778999999999999987752 34677888888899999999999988 22223 3445566667788888888888
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...|..+-..+.+.|++++|.+.|++..+.. .-+...+..+-.++.+.|++++|.+
T Consensus 93 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 93 IDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 7 67788889999999999999999999988653 2356778889999999999999988
No 21
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.82 E-value=3.4e-08 Score=66.92 Aligned_cols=146 Identities=15% Similarity=0.037 Sum_probs=109.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--h-hcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--L-DLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~-~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|.+.|++..+. .+.+...+..+...+.+.|++++|.+. +.. . +.+...+..+...|.+.|++++|
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ----------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHH
Confidence 567889999999999999874 344678888888899999999999998 221 2 33567788888999999999999
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh---------
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS--------- 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--------- 138 (153)
. +...|..+...+.+.|++++|.+.+++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 111 KDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8 67788889999999999999999999988653 3367788888999999999999988
Q ss_pred --HHHHHHHHHHHhh
Q 039275 139 --NIFLTTAIIEMYA 151 (153)
Q Consensus 139 --~~~~~~~li~~y~ 151 (153)
+...+..+...|.
T Consensus 190 ~~~~~~~~~la~~~~ 204 (243)
T 2q7f_A 190 PGHADAFYNAGVTYA 204 (243)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 4555665555553
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.80 E-value=8.5e-08 Score=65.50 Aligned_cols=134 Identities=14% Similarity=0.002 Sum_probs=111.3
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|...|++++|.+.|++..+.. +.+...+..+-..+.+.|++++|.+. .. .. +.+...+..+...|.+.|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHH
Confidence 45788999999999999997753 44678888888999999999999998 21 12 2356678888899999999988
Q ss_pred cc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 87 45678888899999999999999999988654 2357788899999999999999988
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.78 E-value=1.9e-07 Score=67.03 Aligned_cols=78 Identities=12% Similarity=-0.012 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 60 SYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 60 ~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
..++..+...|.+.|++++|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555566666666666665 45566666666666666666666666665432 22345566666666
Q ss_pred cCCCccccchh
Q 039275 128 SGPGALDFGKS 138 (153)
Q Consensus 128 ~~~g~~~~a~~ 138 (153)
.+.|++++|..
T Consensus 296 ~~~g~~~~A~~ 306 (368)
T 1fch_A 296 INLGAHREAVE 306 (368)
T ss_dssp HHHTCHHHHHH
T ss_pred HHCCCHHHHHH
Confidence 66666666665
No 24
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.77 E-value=1.6e-07 Score=62.64 Aligned_cols=133 Identities=10% Similarity=-0.068 Sum_probs=81.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhc-CCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHS-GRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~-g~~~~ 78 (153)
.+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+. .. .. +.+...+..+...+... |++++
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~ 95 (225)
T 2vq2_A 17 EYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAE 95 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHH
Confidence 4566677777777777665542 23455666666666777777777666 11 11 22344566666666677 77666
Q ss_pred cc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 96 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 65 24556666666777777777777777666542 1235556666666667777766665
No 25
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.75 E-value=1.6e-07 Score=62.63 Aligned_cols=135 Identities=16% Similarity=0.014 Sum_probs=110.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCC-CchHHHHHH-hhhhh----c-chhhHHHHHHHHHhcCC
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-GAWILAKEL-QIELD----L-SSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~a~~~-~~~~~----~-~~~~~~~ll~~~~~~g~ 75 (153)
..|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+. ...+. | +...+..+...+.+.|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 45788999999999999997753 34677888889999999 999999998 22222 2 24678888899999999
Q ss_pred ccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 76 IRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 76 ~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++|. +...|..+...+.+.|++++|.+.|++..+.....+...+..+...+...|+.+.+..
T Consensus 129 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 99998 5788889999999999999999999998865432466677788888889999988876
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.73 E-value=2e-07 Score=67.12 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=90.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-------------------------------
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL------------------------------- 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~------------------------------- 52 (153)
.|.+.|++++|++.|++..+.. +.+...+..+...+.+.|++++|.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 4556666666666666665532 23355566666666666666665555
Q ss_pred ----------------hhhhhc---chhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHH
Q 039275 53 ----------------QIELDL---SSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEA 101 (153)
Q Consensus 53 ----------------~~~~~~---~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a 101 (153)
-....| +..++..+...|.+.|++++|. +..+|..+...+...|++++|
T Consensus 187 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp --CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 001112 4556777778888888888877 567788888888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 102 LEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 102 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+.|++..+.. ..+...+..+...+.+.|++++|..
T Consensus 267 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 267 VEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 88888877653 2246677778888888888888877
No 27
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.72 E-value=1.8e-07 Score=65.96 Aligned_cols=58 Identities=14% Similarity=-0.083 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLG--------VHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+...+...|++++|.+.|++..+.. ...+...+..+...+.+.|++++|.+
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 192 DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34455555555555555555555555554321 01123445555555555555555554
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.72 E-value=1.9e-07 Score=65.79 Aligned_cols=133 Identities=9% Similarity=-0.062 Sum_probs=66.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcC-Cccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSG-RIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g-~~~~ 78 (153)
.+...|++++|.++|+++.+.. +.+...+..+...+.+.|++++|..+ ....+.+...+..+...+...| ++++
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 109 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEH 109 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHH
Confidence 3455566666666666665432 22333444444555555666666555 1111223344555555555555 5555
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+...|++++|.+
T Consensus 110 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 110 ARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp HHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 54 34445555555555555555555555554432 1123334445555555555555554
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.71 E-value=8.4e-08 Score=68.91 Aligned_cols=135 Identities=16% Similarity=-0.014 Sum_probs=111.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC-ccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH-TDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+.+.|++++|.+.|+++.+..-. ++..++..+-..+.+.|++++|.+. .. ...| +...+..+...+.+.|++++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 445789999999999999775322 2588899999999999999999998 22 2233 46788899999999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----------ChhhHHHHHHHhcCCCccccc
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT----------DEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------~~~t~~~li~~~~~~g~~~~a 136 (153)
|. +...|..+...+.+.|++++|.+.|++........ ...+|..+..++.+.|+.++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 98 67789999999999999999999999987542111 267899999999999999998
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
..
T Consensus 350 ~~ 351 (368)
T 1fch_A 350 GA 351 (368)
T ss_dssp HH
T ss_pred HH
Confidence 87
No 30
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=2.4e-07 Score=56.57 Aligned_cols=115 Identities=21% Similarity=0.215 Sum_probs=81.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|.++ ......+.. +
T Consensus 9 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~ 68 (136)
T 2fo7_A 9 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------------S 68 (136)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------C
T ss_pred HHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-------------------c
Confidence 46788999999999999997753 34677788888888889999999888 222211110 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...|..+...+...|++++|.+.|+++.... ..+...+..+...+.+.|++++|.+
T Consensus 69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHH
Confidence 3455666677777788888888887776543 2345566777777778887777766
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.68 E-value=9.8e-08 Score=67.23 Aligned_cols=133 Identities=11% Similarity=-0.009 Sum_probs=110.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+. .. .. +.+...+..+...+.+.|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 677889999999999997753 34678888999999999999999998 22 12 334567888999999999999998
Q ss_pred ------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHhcCCCccccch
Q 039275 81 ------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-----------DEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 81 ------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~ 137 (153)
+...|..+...+...|++++|.+.|++.......+ +...+..+..++.+.|+.++|.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 67889999999999999999999999987653221 4678889999999999999887
Q ss_pred h
Q 039275 138 S 138 (153)
Q Consensus 138 ~ 138 (153)
.
T Consensus 307 ~ 307 (327)
T 3cv0_A 307 L 307 (327)
T ss_dssp H
T ss_pred H
Confidence 7
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.66 E-value=4.7e-07 Score=61.58 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=109.3
Q ss_pred hhHhhcCChhHHHHHHHHhHHcC--CCcc----HHHHHHHHHHhcCCCchHHHHHH-hhh--------------------
Q 039275 3 SGYSQAGRFNEALEPFGKLESLG--VHTD----EVTMVVVLTASSGPGAWILAKEL-QIE-------------------- 55 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~~~ll~~~~~~~~~~~a~~~-~~~-------------------- 55 (153)
..|...|++++|++.|++..+.. ..|+ ...+..+-..+.+.|++++|.+. ...
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~ 125 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKEL 125 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHH
Confidence 46788999999999999986642 1122 57888888899999999999888 111
Q ss_pred --------h-hcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 039275 56 --------L-DLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH 114 (153)
Q Consensus 56 --------~-~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 114 (153)
. +.+...+..+...+.+.|++++|. +...|..+...+...|++++|.+.|++..+.. .
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~ 204 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-P 204 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-H
Confidence 1 223456777888999999999998 67889999999999999999999999998754 3
Q ss_pred CChhhHHHHHHHhcCCCccccchh
Q 039275 115 TDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 115 p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+...+..+...+.+.|++++|.+
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 357788889999999999999988
No 33
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.63 E-value=4e-07 Score=68.03 Aligned_cols=131 Identities=13% Similarity=-0.016 Sum_probs=92.1
Q ss_pred hcCChhHHHHHHHHhHH-----cCC--------CccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHH
Q 039275 7 QAGRFNEALEPFGKLES-----LGV--------HTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRY 70 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~-----~g~--------~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~ 70 (153)
+.|++++|.+.|+++.+ ..- +.+...+..+...+...|++++|.+. -....|+...+..+...+
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~ 280 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIM 280 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHH
Confidence 37888888888888766 211 23456666777777888888888877 122234456677777888
Q ss_pred HhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 71 AHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 71 ~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+.|++++|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888887 56677777777888888888888888777543 2245567777777888888877776
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.63 E-value=3.7e-07 Score=64.23 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|..+...+...|++++|.+.+++..+.. ..+...+..+...+...|++++|.+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444444555555555555555544332 1123444444445555555555444
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.60 E-value=4.9e-07 Score=64.00 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=98.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhcchhhH---HHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDLSSYSL---SSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~~~~~---~~ll~~~~~~g~~ 76 (153)
..|.+.|++++|++.+++ +.+...+..+...+.+.|++++|.+. + ....|+.... ...+..+...|++
T Consensus 109 ~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~ 182 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKL 182 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHH
Confidence 357889999999999987 57888999999999999999999998 2 2224554221 2233444455788
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccc
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a 136 (153)
++|. +...|+.+-..+.+.|++++|.+.|++..... | +..++..++..+...|+.+++
T Consensus 183 ~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~ea 253 (291)
T 3mkr_A 183 QDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEV 253 (291)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHH
Confidence 8887 77889999999999999999999999988653 5 666788888899899988753
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.58 E-value=1.1e-06 Score=59.32 Aligned_cols=132 Identities=20% Similarity=0.070 Sum_probs=99.5
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCC-----------CchHHHHHH-hh--hhhc-chhhHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-----------GAWILAKEL-QI--ELDL-SSYSLSSKTS 68 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----------~~~~~a~~~-~~--~~~~-~~~~~~~ll~ 68 (153)
.+.+.|++++|+..|++..+.. +.+...+..+-..+.+. |++++|... +. ...| +...+..+-.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5778999999999999997752 33566777777788888 999999988 22 2334 3456777888
Q ss_pred HHHhcCCccccc-----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccc
Q 039275 69 RYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 69 ~~~~~g~~~~a~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a 136 (153)
.|.+.|++++|. +...|..+-..+...|++++|.+.|++..+.. | +...+..+...+.+.|++++|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC-------
T ss_pred HHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHH
Confidence 999999999987 45778888899999999999999999998653 5 566788888999999999998
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
.+
T Consensus 205 ~~ 206 (217)
T 2pl2_A 205 AR 206 (217)
T ss_dssp --
T ss_pred HH
Confidence 76
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.57 E-value=5.1e-07 Score=67.43 Aligned_cols=133 Identities=7% Similarity=-0.144 Sum_probs=112.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..+...|++++|.+.|++..+.. |+...+..+...+...|++++|.+. ... .+.+...+..+...|.+.|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 35778999999999999998764 4488888889999999999999888 221 23356788889999999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 98 67788899999999999999999999998653 2356778888999999999999988
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.56 E-value=2.1e-06 Score=60.99 Aligned_cols=133 Identities=14% Similarity=0.044 Sum_probs=75.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|++..+. -+.+...+..+-..+...|++++|.+. . ....| +...+..+...+.+.|++++|
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH
Confidence 456667777777777776553 223455666666666667777776666 1 11122 334556666666666666666
Q ss_pred c---------hH------HHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 80 R---------DP------VSCKAM------------ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 80 ~---------~~------~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
. ++ ..+..+ ...+...|++++|.+.|++..+.. ..+...+..+...+.+.|+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 169 (359)
T 3ieg_A 91 EDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGE 169 (359)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCC
Confidence 5 11 112222 355566666666666666665443 2244555566666666666
Q ss_pred cccchh
Q 039275 133 LDFGKS 138 (153)
Q Consensus 133 ~~~a~~ 138 (153)
+++|.+
T Consensus 170 ~~~A~~ 175 (359)
T 3ieg_A 170 PRKAIS 175 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 39
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.56 E-value=1.2e-06 Score=65.93 Aligned_cols=132 Identities=11% Similarity=-0.014 Sum_probs=112.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+...|++++|.+.|++..+. .|+...+..+-..+...|++++|.+. .. .. +.+..++..+...+.+.|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 467789999999999999875 46688888899999999999999998 21 12 33567888899999999999999
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 8 57789999999999999999999999998764 3346688888999999999999988
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.50 E-value=7.3e-07 Score=62.28 Aligned_cols=136 Identities=10% Similarity=0.079 Sum_probs=107.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHc-------CCCccHHHHHHHHHHhcCCCchHHHHHH-hh-----------hhhcchhhH
Q 039275 3 SGYSQAGRFNEALEPFGKLESL-------GVHTDEVTMVVVLTASSGPGAWILAKEL-QI-----------ELDLSSYSL 63 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~-----------~~~~~~~~~ 63 (153)
..|...|++++|...|++..+. ..+.....+..+-..+...|++++|.+. .. ..+.....+
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4678899999999999998763 3444567788888899999999999988 11 113345678
Q ss_pred HHHHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-C
Q 039275 64 SSKTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL------GVHT-D 116 (153)
Q Consensus 64 ~~ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~ 116 (153)
..+...|...|++++|. ....|..+-..+...|++++|.++|++..+. +-.| .
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 194 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNV 194 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 88889999999999988 3456778888999999999999999998754 2233 3
Q ss_pred hhhHHHHHHHhcCCCccccchh
Q 039275 117 EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 117 ~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..++..+...+.+.|++++|.+
T Consensus 195 ~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 195 AKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 4567888889999999999988
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.48 E-value=2.7e-06 Score=67.52 Aligned_cols=133 Identities=10% Similarity=-0.042 Sum_probs=112.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhcc-hhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDLS-SYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~-~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|.+. +. .+.|+ ...|..+-..|.+.|++++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 35788999999999999987742 23467888888999999999999998 22 23443 5678889999999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|+.+-..+.+.|++++|.+.|++..+. .| +...+..+...+...|++++|.+
T Consensus 96 A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHH
Confidence 98 7889999999999999999999999998865 46 46678889999999999999987
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.48 E-value=5.7e-07 Score=61.88 Aligned_cols=131 Identities=8% Similarity=-0.087 Sum_probs=86.6
Q ss_pred hhcCChhHHHHHHHHhHHcCC---CccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccc
Q 039275 6 SQAGRFNEALEPFGKLESLGV---HTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
...|++++|++.|+++.+... +.+...+..+-..+...|++++|.+. ... ..| +...+..+...|.+.|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345677888888888776532 12456666777777788888888777 211 222 45667777778888888877
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...|..+...+.+.|++++|.+.|++..+. .|+.......+..+...|++++|..
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 77 5667777777888888888888888877754 3544444444444455566655554
No 43
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.47 E-value=5e-06 Score=58.96 Aligned_cols=76 Identities=11% Similarity=-0.012 Sum_probs=44.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+...|++++|++.|+++.+. .+.+...+..+-..+...|++++|.+. ... .+.+...+..+...+.+.|++++|
T Consensus 129 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 207 (359)
T 3ieg_A 129 DAFDGADYTAAITFLDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 455667777777777776554 233455666666666667777776666 111 122344555566666666666665
Q ss_pred c
Q 039275 80 R 80 (153)
Q Consensus 80 ~ 80 (153)
.
T Consensus 208 ~ 208 (359)
T 3ieg_A 208 L 208 (359)
T ss_dssp H
T ss_pred H
Confidence 5
No 44
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.46 E-value=9.1e-07 Score=60.78 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=86.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHc------CC-CccHHHHHHHHHHhcCCCchHHHHHH-hhh-----------hhcchhhH
Q 039275 3 SGYSQAGRFNEALEPFGKLESL------GV-HTDEVTMVVVLTASSGPGAWILAKEL-QIE-----------LDLSSYSL 63 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~-----------~~~~~~~~ 63 (153)
..|...|++++|.+.|++..+. +- +....++..+-..+...|++++|.+. ... .+.....+
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 3577899999999999998654 22 33467788888999999999999988 111 12345677
Q ss_pred HHHHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 64 SSKTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 64 ~~ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
..+...|...|++++|. ...++..+-..+...|++++|.+.|++..+
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999988 356788888999999999999999998875
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.44 E-value=7.7e-06 Score=56.14 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=95.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--h-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--L-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|...|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ..- . +.+...+..+...|.+.|++++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHH
Confidence 46778999999999999997752 34678888999999999999999999 222 2 2356788889999999999999
Q ss_pred cc-----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 79 AR-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 79 a~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|. +...+...+..+...|++++|...+++..... .++...+ .+...+...++.++|.+
T Consensus 130 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 130 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLME 198 (275)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHH
Confidence 98 22233344455577799999999997776543 2333333 35555666666555554
No 46
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.44 E-value=1.2e-06 Score=61.15 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=85.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHc------C-CCccHHHHHHHHHHhcCCCchHHHHHH-hhh-----------hhcchhhH
Q 039275 3 SGYSQAGRFNEALEPFGKLESL------G-VHTDEVTMVVVLTASSGPGAWILAKEL-QIE-----------LDLSSYSL 63 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~------g-~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~-----------~~~~~~~~ 63 (153)
..|...|++++|.+.|++..+. + .+.....+..+-..+...|++++|.+. ... .+.....+
T Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 77 LVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3577899999999999988654 2 233467788888899999999999988 111 13344567
Q ss_pred HHHHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 64 SSKTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 64 ~~ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
..+...+.+.|++++|. ...++..+...+...|++++|.+.|++..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88889999999999888 345688888999999999999999999875
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.40 E-value=1.3e-06 Score=65.90 Aligned_cols=134 Identities=10% Similarity=-0.044 Sum_probs=96.9
Q ss_pred hHhhcCCh-hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhc------
Q 039275 4 GYSQAGRF-NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHS------ 73 (153)
Q Consensus 4 ~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~------ 73 (153)
.|...|++ ++|++.|++..+.. +-+...|..+-..+.+.|++++|.+. -....|+...+..+-..|.+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChh
Confidence 45667788 88888888876642 23466777777788888888888877 223456666677777777777
Q ss_pred ---CCccccc------------hHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCC--CChhhHHHHHHHhc
Q 039275 74 ---GRIRLAR------------DPVSCKAMISGYSQA--------GRFNEALEPFGKLESLGVH--TDEVTMVVVLAASS 128 (153)
Q Consensus 74 ---g~~~~a~------------~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~ 128 (153)
|++++|. +...|..+-..|... |++++|.+.|++..+.... -+...+..+-.++.
T Consensus 190 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~ 269 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHK 269 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHH
Confidence 7777777 667777777777777 8888888888887764310 26667777788888
Q ss_pred CCCccccchh
Q 039275 129 GPGALDFGKS 138 (153)
Q Consensus 129 ~~g~~~~a~~ 138 (153)
..|++++|.+
T Consensus 270 ~~g~~~~A~~ 279 (474)
T 4abn_A 270 YEESYGEALE 279 (474)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8888888877
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.40 E-value=3.6e-06 Score=57.87 Aligned_cols=132 Identities=16% Similarity=0.015 Sum_probs=80.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcchhh----HHHHHHHHHhcCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSSYS----LSSKTSRYAHSGRI 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~~~----~~~ll~~~~~~g~~ 76 (153)
.+.+.|++++|++.|++..+.. +.+...+..+-..+...|++++|.+. ...+ .++... |..+-..|.+.|++
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 4567777888888887776542 22344666666677777777777777 1111 122222 56667777777777
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++|. +...|..+-..+...|++++|.+.|++..+. .| +...+..+-..+...+++++|.+
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776 5566777777777777777777777776644 33 33334444413333346666665
No 49
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.40 E-value=3.5e-06 Score=54.14 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=90.2
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..+...|++++|.+.|++..+. .+.+...+..+...+...|++++|.+. ....+.+...+..+...+.+.|++++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHH
Confidence 4578899999999999999775 344677888888899999999999998 12223456678888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
|. +...|..+...+...|++++|.+.+++..+.
T Consensus 129 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 98 6688899999999999999999999998754
No 50
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.36 E-value=4.3e-06 Score=50.76 Aligned_cols=99 Identities=18% Similarity=0.104 Sum_probs=69.6
Q ss_pred HHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 33 MVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
+..+...+...|++++|.++ ...+..+.. +...|..+...+...|++++|.++|+++...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 64 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-------------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 44555566667777777776 222111110 3456777888899999999999999999876
Q ss_pred CCCCChhhHHHHHHHhcCCCccccchh-----------HHHHHHHHHHHhh
Q 039275 112 GVHTDEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYA 151 (153)
Q Consensus 112 g~~p~~~t~~~li~~~~~~g~~~~a~~-----------~~~~~~~li~~y~ 151 (153)
. ..+...+..+...+.+.|++++|.+ +...+..+...|.
T Consensus 65 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 65 D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 3356678888999999999999987 4555656655554
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.32 E-value=4.8e-06 Score=62.61 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=103.7
Q ss_pred CChhHHHHHHHHhHHcCCCcc--------HHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCcc
Q 039275 9 GRFNEALEPFGKLESLGVHTD--------EVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~--------~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
|++++|+++|+++.+. .|+ ...+..+-..+...|++++|.+. -....|+...+..+...+.+.|+++
T Consensus 216 ~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHH
Confidence 5789999999998764 233 23466666778889999999998 3334666778888899999999999
Q ss_pred ccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 78 LAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+|. +..+|..+...+...|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 998 67889999999999999999999999998754 2245778889999999999999988
No 52
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.30 E-value=1.2e-05 Score=54.12 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=100.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|++..+..-+++...+..+-.++.+.|++++|.+. . ....| +...+..+-..|.+.|++++|
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 95 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEY 95 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHH
Confidence 5678999999999999998875447777777788889999999999998 2 22333 445778888999999999999
Q ss_pred c------------hH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHhcCCCcc
Q 039275 80 R------------DP-------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD---EVTMVVVLAASSGPGAL 133 (153)
Q Consensus 80 ~------------~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~ 133 (153)
. +. ..|..+-..+...|++++|.+.|++..+. .|+ ...+..+-..+...|..
T Consensus 96 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 96 IATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 8 33 45777778889999999999999998754 565 45666666677766665
No 53
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.30 E-value=3.1e-06 Score=58.05 Aligned_cols=134 Identities=9% Similarity=-0.014 Sum_probs=103.0
Q ss_pred HhhcCChhHHHHHHHHhHHc-------CCCccHHHHHHHHHHhcCCCchHHHHHH-------h-----hhhhcchhhHHH
Q 039275 5 YSQAGRFNEALEPFGKLESL-------GVHTDEVTMVVVLTASSGPGAWILAKEL-------Q-----IELDLSSYSLSS 65 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~-------~-----~~~~~~~~~~~~ 65 (153)
....|++++|+++|++..+. ..+....++..+-..+...|++++|.+. . ...+....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 34567888888888777542 2334567788888899999999999988 1 111334567888
Q ss_pred HHHHHHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-Chh
Q 039275 66 KTSRYAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL------GVHT-DEV 118 (153)
Q Consensus 66 ll~~~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~ 118 (153)
+-..|...|++++|. ...+|..+-..+...|++++|.+.|++..+. +-.| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999998 3556778888999999999999999998755 2233 356
Q ss_pred hHHHHHHHhcCCCccccchh
Q 039275 119 TMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 119 t~~~li~~~~~~g~~~~a~~ 138 (153)
++..+-..+.+.|++++|.+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 78888899999999999988
No 54
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.29 E-value=2.2e-05 Score=52.05 Aligned_cols=120 Identities=9% Similarity=0.030 Sum_probs=91.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--h-hcchhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--L-DLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~-~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|++. +.|+...+..+-..+.+.|++++|.+. ... . +.+...+..+-..|.+.|++++|
T Consensus 15 ~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 567889999999999877 467889999999999999999999998 222 2 33456777888888999998888
Q ss_pred c------------hH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 039275 80 R------------DP----------------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAAS 127 (153)
Q Consensus 80 ~------------~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 127 (153)
. +. ..|..+-..+.+.|++++|.+.|++..+..-......+...+..+
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 7 12 677788888999999999999999887654333333444444443
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.28 E-value=1e-05 Score=57.30 Aligned_cols=133 Identities=11% Similarity=0.003 Sum_probs=96.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HH-HHHHHHHHhcCCCchHHHHHH-hhhh---hcchhhHHHHHHHH-HhcCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EV-TMVVVLTASSGPGAWILAKEL-QIEL---DLSSYSLSSKTSRY-AHSGRI 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~~~~~~a~~~-~~~~---~~~~~~~~~ll~~~-~~~g~~ 76 (153)
.+.+.|++++|.+.|++..+ +.|+ .. .|..+...+.+.|++++|.++ ...+ +++...|....... ...|+.
T Consensus 108 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCH
T ss_pred HHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCH
Confidence 45678899999999999887 4454 33 788888888888899998888 2222 22333343322221 125787
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTD--EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++|. +...|..++..+.+.|++++|..+|++..... +.|+ ...|..++....+.|+.+.+..
T Consensus 186 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777 67888888999999999999999999998763 5663 5677888888888888888776
No 56
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.27 E-value=1.1e-05 Score=56.91 Aligned_cols=135 Identities=13% Similarity=-0.016 Sum_probs=102.7
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCcc-HHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-------chhhHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHTD-EVTMVVVLTASSGPGAWILAKEL-QIE--LDL-------SSYSLSSKTS 68 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-------~~~~~~~ll~ 68 (153)
.|...|++++|.+.|++.... |-+++ ..+|+.+-..+.+.|++++|... ..- +.| -..+++.+-.
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567789999999999877542 33333 56888888999999999999887 111 111 1346778888
Q ss_pred HHHhc-CCccccc------------h------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh------hHHHH
Q 039275 69 RYAHS-GRIRLAR------------D------PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV------TMVVV 123 (153)
Q Consensus 69 ~~~~~-g~~~~a~------------~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~l 123 (153)
.|... |++++|. + ..+|+.+-..+.+.|++++|.+.|++..+........ .+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 9999998 1 3568888999999999999999999998764332221 56777
Q ss_pred HHHhcCCCccccchh
Q 039275 124 LAASSGPGALDFGKS 138 (153)
Q Consensus 124 i~~~~~~g~~~~a~~ 138 (153)
..++...|+++.|..
T Consensus 206 g~~~~~~g~~~~A~~ 220 (292)
T 1qqe_A 206 GLCQLAATDAVAAAR 220 (292)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 788889999999988
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=7.3e-05 Score=51.61 Aligned_cols=128 Identities=17% Similarity=0.090 Sum_probs=65.2
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC----CCchHHHHHH-hhhhh-cchhhHHHHHHHHHh----cC
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKEL-QIELD-LSSYSLSSKTSRYAH----SG 74 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~-~~~~~-~~~~~~~~ll~~~~~----~g 74 (153)
|.+.|++++|.+.|++..+. -+...+..+-..+.. .+++++|.++ +.... .+...+..+-..|.. .+
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 92 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQ 92 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred HHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCccc
Confidence 44556666666666666552 233344444444455 6666666665 11111 133444445555555 55
Q ss_pred Cccccc----------hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC----CCccccc
Q 039275 75 RIRLAR----------DPVSCKAMISGYSQ----AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG----PGALDFG 136 (153)
Q Consensus 75 ~~~~a~----------~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a 136 (153)
++++|. +...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..+.+ .+++++|
T Consensus 93 ~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A 169 (273)
T 1ouv_A 93 NTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKA 169 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 555555 44555555555555 566666666666655543 23333444444443 5555555
Q ss_pred hh
Q 039275 137 KS 138 (153)
Q Consensus 137 ~~ 138 (153)
..
T Consensus 170 ~~ 171 (273)
T 1ouv_A 170 LA 171 (273)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.20 E-value=5.2e-05 Score=55.80 Aligned_cols=130 Identities=6% Similarity=-0.134 Sum_probs=104.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc-hHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA-WILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+.+.|++++|++.|++..+.. +-+...|+.+-..+.+.|+ +++|.+. ..- ..| +...|+.+-..+.+.|++++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHH
Confidence 4677899999999999998742 2356777888888889996 9999998 222 233 45678888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcC-CCccccc
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSG-PGALDFG 136 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~-~g~~~~a 136 (153)
|. +...|..+-..+.+.|++++|.+.|++..+.. | +...|..+-.++.+ .|..++|
T Consensus 185 Al~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 185 ELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchHH
Confidence 98 78889999999999999999999999998764 4 56677777788888 5554666
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.18 E-value=2.6e-05 Score=53.51 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=100.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCcc--HHHHHHHHHHhcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTD--EVTMVVVLTASSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~ 76 (153)
..|.+.|++++|++.|++..+..-.|+ ...|..+-..+...|++++|.+. .. .. +.+...+..+...|.+.|++
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH
Confidence 467889999999999999988432222 33478888899999999999999 22 12 33556888899999999999
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCc---cccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGA---LDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~---~~~a~~ 138 (153)
++|. +...|..+-..+...+++++|.+.|++..+.. |+ ...+..+...+...|+ +++|..
T Consensus 125 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 125 PLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp HHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 9998 66777777634555669999999999998653 43 5566666667776676 666666
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.17 E-value=1.2e-05 Score=60.63 Aligned_cols=132 Identities=13% Similarity=0.000 Sum_probs=106.3
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCC---------CchHHHHHH-hh--hhhc-chhhHHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP---------GAWILAKEL-QI--ELDL-SSYSLSSKTSR 69 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~-~~--~~~~-~~~~~~~ll~~ 69 (153)
..|.+.|++++|.+.|++..+. .|+...+..+-..+... |++++|.+. +. ...| +...|..+-..
T Consensus 145 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3678899999999999999875 47788888888999999 999999998 22 2233 45677788888
Q ss_pred HHhc--------CCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHH
Q 039275 70 YAHS--------GRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLA 125 (153)
Q Consensus 70 ~~~~--------g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~ 125 (153)
|... |++++|. +...|..+-..|...|++++|.+.|++..+.. | +...+..+-.
T Consensus 223 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~ 300 (474)
T 4abn_A 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQ 300 (474)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 8887 8888877 45678889999999999999999999988653 4 4456777778
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
.+...|++++|.+
T Consensus 301 ~~~~lg~~~eAi~ 313 (474)
T 4abn_A 301 LLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887776
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.15 E-value=3.7e-05 Score=55.84 Aligned_cols=135 Identities=8% Similarity=-0.045 Sum_probs=104.0
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCCCchHHHHHH-hhh----------hhcchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGPGAWILAKEL-QIE----------LDLSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~----------~~~~~~~~~~ll 67 (153)
.+...|++++|++.|++..+. +-.+ ...++..+-..+...|++++|.+. ... ......+++.+-
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 456789999999999998653 2222 346777777888999999998888 111 112235677788
Q ss_pred HHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChhhHHHHH
Q 039275 68 SRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GV-HTDEVTMVVVL 124 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~li 124 (153)
..|...|++++|. ...+|..+-..|...|++++|.+.|++..+. +- .....++..+-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 9999999999998 2247888999999999999999999988752 33 23466788888
Q ss_pred HHhcCCCccccchh
Q 039275 125 AASSGPGALDFGKS 138 (153)
Q Consensus 125 ~~~~~~g~~~~a~~ 138 (153)
..+.+.|++++|.+
T Consensus 272 ~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 272 QIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHCCCHHHHHH
Confidence 99999999999988
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=0.00017 Score=49.73 Aligned_cols=42 Identities=10% Similarity=-0.082 Sum_probs=20.5
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC----CCchHHHHHH
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKEL 52 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~ 52 (153)
.+++++|++.|++..+.+ ++..+..+-..+.. .+++++|.++
T Consensus 55 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~ 100 (273)
T 1ouv_A 55 EKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQY 100 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence 455555555555554443 33344444444444 5555555555
No 63
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.11 E-value=2.1e-05 Score=51.08 Aligned_cols=134 Identities=16% Similarity=0.056 Sum_probs=94.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhcchhhHHHHHHH-HHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDLSSYSLSSKTSR-YAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~~~~~~~ll~~-~~~~g~~~~a 79 (153)
.+.+.|++++|...|++..+. -+-+...+..+-..+.+.|++++|... +. ...|+......+... +.+.+...+|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a 93 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPE 93 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchH
Confidence 577899999999999987653 123566777778888999999999998 11 123333222221111 1121122112
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...+..+-..+...|++++|.+.|++..+....+ +...+..+...+...|+.++|..
T Consensus 94 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 94 LKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2 67888889999999999999999999998765333 35678889999999999998876
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.07 E-value=8.5e-05 Score=48.13 Aligned_cols=112 Identities=19% Similarity=0.118 Sum_probs=88.6
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhh-hcchhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIEL-DLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~-~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
..|.+.|++++|++.+.+..... +-+...+..+-..+...++++.+.+. -... +.+...+..+-..|.+.|++++
T Consensus 47 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~ 125 (184)
T 3vtx_A 47 KTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDK 125 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchh
Confidence 36788999999999999987653 23455566666777888999998888 1222 3345677888899999999999
Q ss_pred cc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 79 AR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
|. +...|..+-..+.+.|++++|.+.|++..+. .|+.
T Consensus 126 A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 126 AIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC--CccC
Confidence 98 7788999999999999999999999998753 4554
No 65
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.04 E-value=6.6e-05 Score=63.22 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=57.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
++.+.|++++|++-|.+- -|...|.-+..++.+.|+++++.++ -....++....+.+..+|++.+++++..
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele 1187 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELE 1187 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHH
Confidence 444555666666655432 3455555566666666666666665 1122233333444555555555554333
Q ss_pred ------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 ------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..|...|++++|..+|+.. ..|..+...+++.|+++.|.+
T Consensus 1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 2233334444444444444444444442 244444444444444444444
No 66
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.02 E-value=9.1e-05 Score=52.05 Aligned_cols=134 Identities=14% Similarity=0.004 Sum_probs=99.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhh---hhhcchhhHHHH-HHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQI---ELDLSSYSLSSK-TSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~---~~~~~~~~~~~l-l~~~~~~g~~~~a 79 (153)
.+.+.|++++|...|++..+.. +-+...+..+-..+.+.|++++|...-. ...|+....... ...+.+.++.++|
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a 204 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPE 204 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCcc
Confidence 4678899999999999987742 2356677778889999999999999911 223443322222 2234555665544
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHhcCCCccccchh
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH-TDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. +...+..+-..+...|++++|.+.|.+..+..-. .+...+..+...+...|+.+++..
T Consensus 205 ~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 205 IQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 4 6788889999999999999999999999876422 236678899999999999888766
No 67
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.01 E-value=2.7e-05 Score=59.71 Aligned_cols=129 Identities=15% Similarity=0.024 Sum_probs=70.9
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccccc---
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLAR--- 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a~--- 80 (153)
.|++++|.+.|++..+. -+-+...+..+-..+.+.|++++|.+. +.- ..| +...+..+-..|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35677777777766543 122355666666667777777777776 221 222 3445666667777777777776
Q ss_pred ---------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC---Cccccchh
Q 039275 81 ---------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP---GALDFGKS 138 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~ 138 (153)
+...|..+-..+.+.|++++|.+.|++..+.. .-+...+..+...+... |+.++|.+
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 55677777777777778888877777776543 12345566666677777 66666655
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=97.97 E-value=0.00013 Score=51.60 Aligned_cols=131 Identities=7% Similarity=-0.094 Sum_probs=97.6
Q ss_pred hcCCh-------hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhcch-h-hHHHHHHHHHhcC
Q 039275 7 QAGRF-------NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDLSS-Y-SLSSKTSRYAHSG 74 (153)
Q Consensus 7 ~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~~-~-~~~~ll~~~~~~g 74 (153)
+.|++ ++|...|++..+.--+-+...|..+...+.+.|++++|.++ +. ...|+. . .|..+...+.+.|
T Consensus 69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 148 (308)
T 2ond_A 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 148 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence 45776 89999999988742233566888888999999999999998 22 234543 3 7889999999999
Q ss_pred Cccccc------------hHHHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 75 RIRLAR------------DPVSCKAMISGY-SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 75 ~~~~a~------------~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++++|. +...|....... ...|+.++|.++|++..+.. .-+...|..++..+.+.|++++|..
T Consensus 149 ~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 149 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999987 223333222221 23699999999999987642 2266788889999999999999887
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.96 E-value=0.00011 Score=61.88 Aligned_cols=133 Identities=9% Similarity=0.069 Sum_probs=85.5
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc-
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR- 80 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~- 80 (153)
+..|.+.|++++|++++..-++.. +++...+-+..+|++.+++++...+.. .++...|..+-..|...|++++|.
T Consensus 1141 a~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~--~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1141 VQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 567889999999999998766654 333333347888888888887666532 233344555667777777777777
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------------------------CCCCChhhHHHHHHHhcCCCcc
Q 039275 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKLESL------------------------GVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 81 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g~~p~~~t~~~li~~~~~~g~~ 133 (153)
....|..+...+++.|++++|.+.+++-... ++..+...+..++..|.+.|.+
T Consensus 1217 ~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1217 LYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 5567777777777777777777766543211 0112333455666666666666
Q ss_pred ccchh
Q 039275 134 DFGKS 138 (153)
Q Consensus 134 ~~a~~ 138 (153)
++|..
T Consensus 1297 eEAI~ 1301 (1630)
T 1xi4_A 1297 EELIT 1301 (1630)
T ss_pred HHHHH
Confidence 66665
No 70
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.96 E-value=0.00011 Score=51.62 Aligned_cols=136 Identities=10% Similarity=-0.057 Sum_probs=98.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCC-ccH----HHHHHHHHHhcCCCchHHHHHH-hhhh-------hcc--hhhHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVH-TDE----VTMVVVLTASSGPGAWILAKEL-QIEL-------DLS--SYSLSSKT 67 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~~~~~~a~~~-~~~~-------~~~--~~~~~~ll 67 (153)
..+...|++++|.+.+++..+..-. ++. ..+..+-..+...|++++|.+. ...+ .+. ..+++.+-
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4577899999999999887664322 111 2233344566788899999887 2111 111 34778888
Q ss_pred HHHHhcCCccccc-------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhhHHHH
Q 039275 68 SRYAHSGRIRLAR-------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVV 123 (153)
Q Consensus 68 ~~~~~~g~~~~a~-------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~l 123 (153)
..|...|++++|. ...+|+.+-..|.+.|++++|.+.+++..+. +..+ -..+|..+
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~l 242 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQR 242 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 9999999999988 1268888999999999999999999987633 2111 25678888
Q ss_pred HHHhcCCCccccc-hh
Q 039275 124 LAASSGPGALDFG-KS 138 (153)
Q Consensus 124 i~~~~~~g~~~~a-~~ 138 (153)
-..+.+.|++++| ..
T Consensus 243 g~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 243 GECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHTTCCHHHHHH
T ss_pred HHHHHHcCCcHHHHHH
Confidence 8899999999998 44
No 71
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.94 E-value=5e-05 Score=53.05 Aligned_cols=134 Identities=12% Similarity=0.027 Sum_probs=76.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc----HHHHHHHHHHhcCCCchHHHHHH-hh--------h-hhcchhhHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD----EVTMVVVLTASSGPGAWILAKEL-QI--------E-LDLSSYSLSSKTSR 69 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~-~~--------~-~~~~~~~~~~ll~~ 69 (153)
.+.+.|++++|...|++..+..- .+ ...+..+-..+...|++++|.+. .. + .+.....+..+...
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 45667777777777777766421 12 35566666677777777777766 10 0 11123455556666
Q ss_pred HHhcCCccccc------------------hHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc
Q 039275 70 YAHSGRIRLAR------------------DPVSCKAMISGYSQAGR--------------------FNEALEPFGKLESL 111 (153)
Q Consensus 70 ~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~ 111 (153)
|...|++++|. ...++..+-..+...|+ +++|.+.+++....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 66777776666 12355566666666666 66666666554321
Q ss_pred ----CCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 112 ----GVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 112 ----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+-.| ....+..+...+...|++++|.+
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 173 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 1111 12345555556666666666655
No 72
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.93 E-value=3.1e-05 Score=56.36 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=25.3
Q ss_pred hHhhcCChhHHHHHHHHhHHc----C-CCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----G-VHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.|...|++++|.+.|++..+. + .+.....+..+-..+...|++++|.+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 148 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC 148 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 345556666666666555332 1 112234444555555666666666555
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.92 E-value=7.8e-05 Score=51.23 Aligned_cols=134 Identities=12% Similarity=0.087 Sum_probs=93.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc---HHHHHHHHHHhcCCCchHHHHHH-hh--hhhcc----hhhHHHHHHHHHh-
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD---EVTMVVVLTASSGPGAWILAKEL-QI--ELDLS----SYSLSSKTSRYAH- 72 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~----~~~~~~ll~~~~~- 72 (153)
.+.+.|++++|++.|+++.+.. +-+ ...+..+-.++.+.|++++|... .. ...|+ ...+..+-..+.+
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 5678999999999999997753 112 56677777888999999999998 21 22232 2345556667777
Q ss_pred -------cCCccccc------------hHHHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHcCCC-C
Q 039275 73 -------SGRIRLAR------------DPVSC-----------------KAMISGYSQAGRFNEALEPFGKLESLGVH-T 115 (153)
Q Consensus 73 -------~g~~~~a~------------~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p 115 (153)
.|++++|. +...+ -.+-..|.+.|++++|...|++..+.... |
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~ 182 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP 182 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred cccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc
Confidence 88888887 22233 34567788999999999999999865421 1
Q ss_pred -ChhhHHHHHHHhcCC----------Cccccchh
Q 039275 116 -DEVTMVVVLAASSGP----------GALDFGKS 138 (153)
Q Consensus 116 -~~~t~~~li~~~~~~----------g~~~~a~~ 138 (153)
....+..+..++.+. |++++|..
T Consensus 183 ~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 183 WADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 234566677777766 66666666
No 74
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.91 E-value=0.00029 Score=41.90 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=63.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+.+.|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|..+ ...+..+.. +
T Consensus 17 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~ 76 (125)
T 1na0_A 17 NAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------------N 76 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------C
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-------------------c
Confidence 35677888888888888886652 34566777777788888888888777 222211110 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
...|..+...+...|++++|.+.|++..+..
T Consensus 77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3567778888899999999999999887653
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.90 E-value=5.4e-05 Score=54.96 Aligned_cols=134 Identities=13% Similarity=-0.022 Sum_probs=101.6
Q ss_pred HhhcCChhHHHHHHHHhHHcC-CCc----cHHHHHHHHHHhcCCCchHHHHHH-------hhh---hh-cchhhHHHHHH
Q 039275 5 YSQAGRFNEALEPFGKLESLG-VHT----DEVTMVVVLTASSGPGAWILAKEL-------QIE---LD-LSSYSLSSKTS 68 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g-~~p----~~~~~~~ll~~~~~~~~~~~a~~~-------~~~---~~-~~~~~~~~ll~ 68 (153)
+...|++++|++.|++..+.- -.+ ...++..+-..+...|++++|... ... .. ....+++.+-.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 567899999999999886531 112 245677777788999999988887 111 01 12456777888
Q ss_pred HHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCChhhHHHHHHH
Q 039275 69 RYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHTDEVTMVVVLAA 126 (153)
Q Consensus 69 ~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~ 126 (153)
.|...|++++|. ...+++.+-..+...|++++|.+.|++.... +-.....++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 999999999998 2457788888999999999999999988751 222336778888889
Q ss_pred hcCCCccccchh
Q 039275 127 SSGPGALDFGKS 138 (153)
Q Consensus 127 ~~~~g~~~~a~~ 138 (153)
+.+.|++++|.+
T Consensus 271 ~~~~g~~~~A~~ 282 (378)
T 3q15_A 271 LCKAGQTQKAFQ 282 (378)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHCCCHHHHHH
Confidence 999999999988
No 76
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.90 E-value=6.3e-05 Score=49.22 Aligned_cols=133 Identities=11% Similarity=-0.066 Sum_probs=92.1
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh---------hhhcchhhHHHHHHHHHhcC
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI---------ELDLSSYSLSSKTSRYAHSG 74 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~---------~~~~~~~~~~~ll~~~~~~g 74 (153)
....|++++|.+.++.+... .......+..+-..+...|++++|... .. ........+..+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35678999999965555432 223567777888888889999998888 11 11223456777778888999
Q ss_pred Cccccc-------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCC--ChhhHHHHHHHhcCC
Q 039275 75 RIRLAR-------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG---VHT--DEVTMVVVLAASSGP 130 (153)
Q Consensus 75 ~~~~a~-------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p--~~~t~~~li~~~~~~ 130 (153)
++++|. ....+..+-..+...|++++|.+.+++..... -.| -..++..+-..+...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 988888 13457777888899999999999998876331 111 233457778889999
Q ss_pred Cccccchh
Q 039275 131 GALDFGKS 138 (153)
Q Consensus 131 g~~~~a~~ 138 (153)
|++++|.+
T Consensus 161 g~~~~A~~ 168 (203)
T 3gw4_A 161 KNLLEAQQ 168 (203)
T ss_dssp TCHHHHHH
T ss_pred cCHHHHHH
Confidence 99999987
No 77
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.90 E-value=6.7e-05 Score=54.55 Aligned_cols=134 Identities=14% Similarity=0.037 Sum_probs=90.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH----HHHHHHHHHhcCCCchHHHHHH-hhh---------hhcchhhHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE----VTMVVVLTASSGPGAWILAKEL-QIE---------LDLSSYSLSSKTSR 69 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~-~~~---------~~~~~~~~~~ll~~ 69 (153)
.+...|++++|++.|++..+.+- .+. ..+..+-..+...|++++|.+. +.. .+.....+..+-..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 56788999999999999987632 222 4677778888899999999888 111 12334566777788
Q ss_pred HHhcCCccccc------------------hHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc---
Q 039275 70 YAHSGRIRLAR------------------DPVSCKAMISGYSQAGR-----------------FNEALEPFGKLESL--- 111 (153)
Q Consensus 70 ~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~--- 111 (153)
|...|++++|. ...+|..+-..+...|+ +++|.+.+++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888877 23466666677777777 77777777665421
Q ss_pred -CCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 112 -GVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 112 -g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+-.| ....+..+-..+...|++++|.+
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 1111 22355666666777777777666
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.88 E-value=6.6e-05 Score=52.43 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=88.0
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCCCc--------------------hHHHHHH-hh---
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGPGA--------------------WILAKEL-QI--- 54 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~--------------------~~~a~~~-~~--- 54 (153)
.|...|++++|.+.|++..+. +-.+ ...++..+-..+...|+ +++|.+. ..
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 466778888888888776442 1111 13366666667777777 7777666 11
Q ss_pred -----h-hhcchhhHHHHHHHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 55 -----E-LDLSSYSLSSKTSRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 55 -----~-~~~~~~~~~~ll~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
+ .......+..+...+...|++++|. ...+|..+...+...|++++|.+.+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 1112345666777788888888877 233777777888888888888888887653
Q ss_pred cC----CCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 111 LG----VHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 111 ~g----~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.. -.+ ...++..+-..+...|++++|..
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 21 111 14566777778888888888877
No 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.88 E-value=0.00047 Score=50.70 Aligned_cols=145 Identities=8% Similarity=-0.065 Sum_probs=104.1
Q ss_pred hHhhcCC-hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hc-chhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGR-FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+.+.|+ +++|+..|++..+.. +-+...|..+-.++.+.|++++|... ..-+ .| +...|..+-..+.+.|++++
T Consensus 140 ~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHH
Confidence 4667786 999999999997752 23567777778888888999998888 2222 33 45677888888999999999
Q ss_pred cc------------hHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHcCCCC-ChhhHHHHHHHhcCCC--ccccch
Q 039275 79 AR------------DPVSCKAMISGYSQ-AGRFNEA-----LEPFGKLESLGVHT-DEVTMVVVLAASSGPG--ALDFGK 137 (153)
Q Consensus 79 a~------------~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g--~~~~a~ 137 (153)
|. +...|+.+-..+.+ .|..++| .+.|++.... .| +...|..+-..+.+.| +++++.
T Consensus 219 Al~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~ 296 (382)
T 2h6f_A 219 ELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLL 296 (382)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHH
Confidence 88 77888888888888 6665777 4777776653 45 4556777777788877 455555
Q ss_pred h----------HHHHHHHHHHHhh
Q 039275 138 S----------NIFLTTAIIEMYA 151 (153)
Q Consensus 138 ~----------~~~~~~~li~~y~ 151 (153)
+ +...+..|.+.|.
T Consensus 297 ~~~~~~~~~p~~~~al~~La~~~~ 320 (382)
T 2h6f_A 297 NQLLDLQPSHSSPYLIAFLVDIYE 320 (382)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHH
Confidence 4 3445555555543
No 80
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.88 E-value=0.00014 Score=45.84 Aligned_cols=114 Identities=11% Similarity=0.060 Sum_probs=71.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+...|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ...+..+.. +.
T Consensus 22 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~ 81 (166)
T 1a17_A 22 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-------------------YI 81 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-------------------cH
Confidence 4678899999999999887642 33577777778888889999998888 222221110 22
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH--HHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM--VVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~ 138 (153)
..|..+-..+...|++++|.+.|++...... .+...+ ......+.+.|++++|.+
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777665421 122222 333333556666666665
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.87 E-value=0.0006 Score=41.84 Aligned_cols=95 Identities=7% Similarity=0.015 Sum_probs=68.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.|.+.|++++|++.|++..+. -+.+...|..+-.++.+.|++++|.+. ..-+..+.. +.
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~ 81 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKR-DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-------------------FI 81 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-------------------hh
Confidence 467888888888888887664 234567777777888888888888877 333322221 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTM 120 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 120 (153)
..|..+-..+...|++++|.+.|++..+. .|+....
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a 117 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEA 117 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHH
Confidence 66778888899999999999999988764 5654433
No 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.86 E-value=0.00029 Score=53.45 Aligned_cols=133 Identities=12% Similarity=0.040 Sum_probs=95.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-H-HHHHHHHHHhcCCCchHHHHHH-hhhh--hcc-hhhHHHHHH-HHHhcCCc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-E-VTMVVVLTASSGPGAWILAKEL-QIEL--DLS-SYSLSSKTS-RYAHSGRI 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~-~~~~~~ll~-~~~~~g~~ 76 (153)
.+.+.|++++|.++|++..+. .|+ . ..|......+.+.|++++|.++ ...+ .|+ ...+..... .+...|+.
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~ 407 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK 407 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH
T ss_pred HHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh
Confidence 456789999999999999874 454 2 4788888888888899999888 2222 222 222222111 13357888
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--hhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG-VHTD--EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++|. +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....+.|+.+.+..
T Consensus 408 ~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~ 484 (530)
T 2ooe_A 408 SVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 484 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8887 67889999999999999999999999988764 3343 4467777888888888887766
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.86 E-value=0.00014 Score=57.78 Aligned_cols=121 Identities=10% Similarity=-0.006 Sum_probs=100.1
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH-hh--hhhcc-hhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL-QI--ELDLS-SYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGY 92 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~~-~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~ 92 (153)
+...|+.+=..+.+.|++++|.+. +. .+.|+ ...++.|-..|.+.|++++|. +...|..+-..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 457788888899999999999999 32 23443 567888999999999999998 688999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh-----------HHHHHHHHHHHhh
Q 039275 93 SQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS-----------NIFLTTAIIEMYA 151 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~-----------~~~~~~~li~~y~ 151 (153)
.+.|++++|.+.|++..+. .| +...+..+-..+.++|++++|.+ +...+..|...|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 9999999999999998864 45 56788999999999999999998 5566666655553
No 84
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.85 E-value=7.1e-05 Score=58.95 Aligned_cols=129 Identities=12% Similarity=-0.054 Sum_probs=60.6
Q ss_pred hcCChhHHHHHHHHhHH-------cCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCC
Q 039275 7 QAGRFNEALEPFGKLES-------LGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~ 75 (153)
..|++++|++.|++..+ ..-+.+...+..+-.++.+.|++++|.+. .. ...| +...+..+-..|.+.|+
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence 34555555555555541 11122334444444455555555555555 11 1122 22344444455555555
Q ss_pred ccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 76 IRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 76 ~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++|. +...|..+-..+.+.|++++ .+.|++..+.. | +...+..+-.++.+.|++++|.+
T Consensus 483 ~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 483 YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 55554 34445555555555555555 55555544332 2 23344445555555555555544
No 85
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.83 E-value=9.2e-05 Score=53.41 Aligned_cols=76 Identities=12% Similarity=-0.009 Sum_probs=38.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc----HHHHHHHHHHhcCCCchHHHHHH-hh--------h-hhcchhhHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD----EVTMVVVLTASSGPGAWILAKEL-QI--------E-LDLSSYSLSSKTSR 69 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~-~~--------~-~~~~~~~~~~ll~~ 69 (153)
.+.+.|++++|+..|++..+.+- .+ ...+..+-..+...|++++|... .. + .+.....+..+-..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 34556666666666666655421 12 23455555566666666666655 00 0 01112344445555
Q ss_pred HHhcCCccccc
Q 039275 70 YAHSGRIRLAR 80 (153)
Q Consensus 70 ~~~~g~~~~a~ 80 (153)
|...|++++|.
T Consensus 97 ~~~~g~~~~A~ 107 (406)
T 3sf4_A 97 LKVLGNFDEAI 107 (406)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCCHHHHH
Confidence 55555555555
No 86
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.83 E-value=0.00022 Score=49.95 Aligned_cols=137 Identities=10% Similarity=-0.051 Sum_probs=99.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcC-CCccHH----HHHHHHHHhcCCCchHHHHHH-hhhh-----hcc----hhhHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLG-VHTDEV----TMVVVLTASSGPGAWILAKEL-QIEL-----DLS----SYSLSSK 66 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~-~~~~-----~~~----~~~~~~l 66 (153)
+..+.+.|++++|.+.+++..... ..|+.. .+..+...+...+++++|.+. ..-+ .++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 345778899999999999987642 334422 333456667778899999887 2211 122 2257888
Q ss_pred HHHHHhcCCccccc-------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHH
Q 039275 67 TSRYAHSGRIRLAR-------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHTD-EVTMVV 122 (153)
Q Consensus 67 l~~~~~~g~~~~a~-------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~ 122 (153)
-..|...|++++|. ...+|..+-..|.+.|++++|.+.+++..+. +-.+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 88999999999888 3347888899999999999999999877532 32332 567888
Q ss_pred HHHHhcCCCc-cccchh
Q 039275 123 VLAASSGPGA-LDFGKS 138 (153)
Q Consensus 123 li~~~~~~g~-~~~a~~ 138 (153)
+-.++.+.|+ +++|.+
T Consensus 242 lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHhCCcHHHHHH
Confidence 8888889995 588877
No 87
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.82 E-value=0.00012 Score=43.98 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=74.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+...|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ...+..+.. +.
T Consensus 21 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~ 80 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-------------------YS 80 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-------------------CH
Confidence 4667888888888888876642 33566777777777888888888777 222221110 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGAL 133 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 133 (153)
..|..+-..+...|++++|.+.|++..+.. ..+...+..+..++.+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 567777888999999999999999988653 12455666666666665554
No 88
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.82 E-value=0.00018 Score=46.40 Aligned_cols=108 Identities=8% Similarity=0.042 Sum_probs=78.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHH-HHhcCCc--
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSR-YAHSGRI-- 76 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~-~~~~g~~-- 76 (153)
.+...|++++|++.|++..+.. +.+...+..+-..+...|++++|... .. ...| +...+..+... +.+.|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3567889999999999887652 34677888888899999999999998 22 2233 44566666677 6788887
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
++|. +...|..+-..+...|++++|.+.|++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777 56778888888999999999999999887653
No 89
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.82 E-value=4.8e-05 Score=54.88 Aligned_cols=128 Identities=15% Similarity=0.110 Sum_probs=89.4
Q ss_pred hhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCCCchHHHHHH-hhhh---------hcchhhHHHHHHHHHhcCC
Q 039275 11 FNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGPGAWILAKEL-QIEL---------DLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 11 ~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~---------~~~~~~~~~ll~~~~~~g~ 75 (153)
+++|.+.+++..+. +-.| ...++..+-..+...|++++|.+. ...+ ......+..+...|.+.|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 78888888766432 2222 234666777788888898888887 1111 1112367777888889999
Q ss_pred ccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-ChhhHHHHHHHhcCCCc
Q 039275 76 IRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLG----VHT-DEVTMVVVLAASSGPGA 132 (153)
Q Consensus 76 ~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p-~~~t~~~li~~~~~~g~ 132 (153)
+++|. ...++..+-..+...|++++|.+.|++..... -.+ ...++..+-..+.+.|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88887 25677888888899999999999998876431 111 25567778888888899
Q ss_pred cccchh
Q 039275 133 LDFGKS 138 (153)
Q Consensus 133 ~~~a~~ 138 (153)
+++|.+
T Consensus 323 ~~~A~~ 328 (406)
T 3sf4_A 323 HDQAMH 328 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988887
No 90
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.80 E-value=8e-05 Score=52.73 Aligned_cols=134 Identities=8% Similarity=-0.033 Sum_probs=81.6
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCCCchHHHHHH-hhhh---------hcchhhHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGPGAWILAKEL-QIEL---------DLSSYSLSSKTS 68 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~~---------~~~~~~~~~ll~ 68 (153)
.|...|++++|.+.|.+.... |-.+ -..+|+.+-..+.+.|++++|... ..-+ ..-..+++.+-.
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667777777777766432 1111 134666666777777877777776 1110 111345666667
Q ss_pred HHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHH
Q 039275 69 RYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHTD-EVTMVVVLA 125 (153)
Q Consensus 69 ~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~ 125 (153)
.|.+ |++++|. ...+|+.+-..+.+.|++++|.+.|++.... +..+. ...+..+..
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 7777776 1456777777788888888888888777642 21121 225555666
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
++...|++++|..
T Consensus 204 ~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 204 VQLHRADYVAAQK 216 (307)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 6666677777765
No 91
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.78 E-value=0.0007 Score=40.83 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=65.7
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+.+.|++++|.+.|++..+.. +.+...+..+-..+...|++++|.+. ...+..+.. +
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~ 83 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-------------------F 83 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-------------------C
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------------------c
Confidence 35678899999999998887642 33677777888888889999988887 222221111 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
...|..+-..+.+.|++++|.+.|++..+.
T Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 84 IKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356777788889999999999999988764
No 92
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.73 E-value=0.00025 Score=46.87 Aligned_cols=105 Identities=10% Similarity=-0.081 Sum_probs=86.2
Q ss_pred HHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHH
Q 039275 34 VVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNE 100 (153)
Q Consensus 34 ~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~ 100 (153)
..+-..+...|++++|.+. ..-+.|+...+..+-..|.+.|++++|. +...|..+-..+...|++++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 3444566788999999998 5556778889999999999999999998 67788899999999999999
Q ss_pred HHHHHHHHHHcCC--------------CC-ChhhHHHHHHHhcCCCccccchh
Q 039275 101 ALEPFGKLESLGV--------------HT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 101 a~~~~~~m~~~g~--------------~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|.+.|++..+..- .| +...+..+-.++.+.|++++|.+
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 9999999886431 12 22677888889999999999987
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.67 E-value=0.00012 Score=52.33 Aligned_cols=122 Identities=10% Similarity=-0.031 Sum_probs=88.0
Q ss_pred HHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhc-----chhhHHHHHHHHHhcCCccccc-------
Q 039275 14 ALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDL-----SSYSLSSKTSRYAHSGRIRLAR------- 80 (153)
Q Consensus 14 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~------- 80 (153)
|+..|++....+ +++..++..+-.++...|++++|.++ ..++.+ +...+..++..+.+.|+++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665554 45666666777888889999999999 444443 3455667789999999999988
Q ss_pred --h-------HHHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 --D-------PVSCKAMISG--YSQAG--RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 --~-------~~~~~~li~~--~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+ ..+...|..+ ....| +..+|+.+|+++.+. -|+..+-..++.++.++|++++|++
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 2 3455555555 34334 999999999998754 3654455566668999999999998
No 94
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.67 E-value=0.00053 Score=45.90 Aligned_cols=109 Identities=8% Similarity=-0.031 Sum_probs=88.2
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHH
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMIS 90 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~ 90 (153)
.|+..+...-..+.+.|++++|.+. ....+++...+..+-..+.+.|++++|. +...|..+-.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567777777888999999999998 2222256667777889999999999998 6778999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC-h-------hhHHHHHHHhcCCCccccchh
Q 039275 91 GYSQAGRFNEALEPFGKLESLGVHTD-E-------VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~-------~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+...|++++|.+.|++..+.. |+ . ..|..+-..+.+.|++++|.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 9999999999999999988653 43 2 457777788889999999988
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.64 E-value=0.00061 Score=52.18 Aligned_cols=108 Identities=8% Similarity=-0.071 Sum_probs=89.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|++++|.+.|++..+.. +.+...+..+-..+.+.|++++|.+. +.- ..| +...+..+-..|.+.|++++|
T Consensus 32 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 110 (568)
T 2vsy_A 32 AELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAA 110 (568)
T ss_dssp HHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 5678899999999999987752 34577888888899999999999998 222 233 456788888999999999999
Q ss_pred c------------hHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcC
Q 039275 80 R------------DPVSCKAMISGYSQA---GRFNEALEPFGKLESLG 112 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 112 (153)
. +...+..+...+... |+.++|.+.+++..+.+
T Consensus 111 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 111 AAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 8 677888899999999 99999999999998664
No 96
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00013 Score=55.41 Aligned_cols=77 Identities=10% Similarity=-0.012 Sum_probs=50.2
Q ss_pred hHhhcCChhHHHHHHHHhHHc---CC---Cc-cHHHHHHHHHHhcCCCchHHHHHH-hhh-----------hhcchhhHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL---GV---HT-DEVTMVVVLTASSGPGAWILAKEL-QIE-----------LDLSSYSLS 64 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~---g~---~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~~-----------~~~~~~~~~ 64 (153)
.+...|++++|..++++.... -+ .| ...+++.+...|...|++++|..+ +.- .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887542 12 22 357788888899999999999888 111 112233455
Q ss_pred HHHHHHHhcCCccccc
Q 039275 65 SKTSRYAHSGRIRLAR 80 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~ 80 (153)
.|-..|...|++++|.
T Consensus 398 nLa~~~~~~G~~~eA~ 413 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGH 413 (490)
T ss_dssp HHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 5555555555555555
No 97
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.62 E-value=0.00036 Score=49.33 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=94.9
Q ss_pred cCChhHHHHHHHHhHHc------CCCccH----HHHHHHHHHhcCCCchHHHHHH-hhh--h-------hcchhhHHHHH
Q 039275 8 AGRFNEALEPFGKLESL------GVHTDE----VTMVVVLTASSGPGAWILAKEL-QIE--L-------DLSSYSLSSKT 67 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~------g~~p~~----~~~~~ll~~~~~~~~~~~a~~~-~~~--~-------~~~~~~~~~ll 67 (153)
.|++++|.+++++..+. ++.++. ..|......+...|++++|.+. ..- + ..-...++.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56788888888876542 223443 4677777888889999998887 111 1 11235788888
Q ss_pred HHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CC--ChhhHHHHH
Q 039275 68 SRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGV---HT--DEVTMVVVL 124 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p--~~~t~~~li 124 (153)
..|.+.|++++|. ...+|+.+-..|.. |++++|.+.|++-....- .+ ...++..+-
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 9999999999998 23567777788888 999999999988764311 11 146788888
Q ss_pred HHhcCCCccccchh
Q 039275 125 AASSGPGALDFGKS 138 (153)
Q Consensus 125 ~~~~~~g~~~~a~~ 138 (153)
..+.+.|++++|.+
T Consensus 163 ~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 163 RLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHcCCHHHHHH
Confidence 99999999999988
No 98
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.61 E-value=0.00048 Score=40.90 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
...+..+...+...|++++|.++ ...+..+.. +...|..+...+.+.|++++|..+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666777777888888888777 222211110 3467778888999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 109 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+.. ..+..++..+...+.+.|++++|.+
T Consensus 70 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (125)
T 1na0_A 70 LELD-PNNAEAWYNLGNAYYKQGDYDEAIE 98 (125)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC-CccHHHHHHHHHHHHHhcCHHHHHH
Confidence 8654 3466788889999999999999988
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.60 E-value=0.0003 Score=44.48 Aligned_cols=74 Identities=7% Similarity=-0.082 Sum_probs=43.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCcc-HHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCcccc
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
+...|++++|+..+.+.... .|+ ...+-.+=..|.+.|++++|.+. ..- +.| +...|..+-..|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 45667888888888776542 333 33444556678888999999888 222 333 233444444444444444444
Q ss_pred c
Q 039275 80 R 80 (153)
Q Consensus 80 ~ 80 (153)
.
T Consensus 85 ~ 85 (150)
T 4ga2_A 85 V 85 (150)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.60 E-value=0.00025 Score=44.09 Aligned_cols=122 Identities=15% Similarity=0.095 Sum_probs=70.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCC-Ccc----HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGV-HTD----EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~ 77 (153)
.|...|++++|.+.+++..+..- .++ ...+..+-..+...|++++|.+. ...+... -..++..
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-----------~~~~~~~ 86 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-----------RQLKDRA 86 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHTTCHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------HHhCCcH
Confidence 56778999999999988754311 111 24666777788888999988887 1111100 0000000
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
. ....+..+-..+...|++++|.+.+++..+. +-.+ ....+..+-..+...|++++|.+
T Consensus 87 ~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 87 V--EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 0 2245556666667777777777777665432 1111 23455666666777777777665
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.59 E-value=0.00059 Score=53.73 Aligned_cols=129 Identities=8% Similarity=-0.070 Sum_probs=97.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|.+. + ....| +...+..+-..|.+.|++++
T Consensus 442 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~- 519 (681)
T 2pzi_A 442 ALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE- 519 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-
T ss_pred HHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-
Confidence 5778999999999999997642 23566777777888999999999988 2 22334 45678888899999999999
Q ss_pred c------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccc
Q 039275 80 R------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 80 ~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a 136 (153)
. +...|..+-..+.+.|++++|.+.|++..+. .|+ ...+..+..++...+..+++
T Consensus 520 ~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~ 587 (681)
T 2pzi_A 520 HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEV 587 (681)
T ss_dssp TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC-------C
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCC
Confidence 7 6778999999999999999999999987643 565 45666777777776663333
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.58 E-value=0.0014 Score=46.83 Aligned_cols=134 Identities=8% Similarity=-0.068 Sum_probs=94.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCC-CccHHHHHHHHHHhcCCCchHHHHHH---hhhhhc-----chhhHHHHHHHH--H
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLTASSGPGAWILAKEL---QIELDL-----SSYSLSSKTSRY--A 71 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~-----~~~~~~~ll~~~--~ 71 (153)
..+...|++++|++++.+-...|- .-+...+..++..+.+.|+++.|.+. -....| +..+...|..++ .
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 357788999999999998755443 23677888889999999999999999 234566 356666677663 3
Q ss_pred hcC--Cccccc-----------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C---CCC-ChhhHHHHHHHhcC
Q 039275 72 HSG--RIRLAR-----------DPVSCKAMISGYSQAGRFNEALEPFGKLESL-----G---VHT-DEVTMVVVLAASSG 129 (153)
Q Consensus 72 ~~g--~~~~a~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g---~~p-~~~t~~~li~~~~~ 129 (153)
..| +..+|. +..+-..++.++.+.|++++|.+.++.+.+. . ..| +..+...+|.....
T Consensus 188 ~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHH
Confidence 334 777776 2234455666899999999999999977643 1 124 55555577666666
Q ss_pred CCccccchh
Q 039275 130 PGALDFGKS 138 (153)
Q Consensus 130 ~g~~~~a~~ 138 (153)
.|+ .+.+
T Consensus 268 lgk--~a~~ 274 (310)
T 3mv2_B 268 QGL--DTED 274 (310)
T ss_dssp TTC--TTHH
T ss_pred hCh--HHHH
Confidence 675 4444
No 103
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.58 E-value=0.00066 Score=40.68 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=73.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcch-hhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSS-YSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~-~~~~~ll~~~~~~g~~~~ 78 (153)
..+.+.|++++|...|++..+.. +.+...+..+-..+...|++++|... ...+ .|+. ..+..
T Consensus 12 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------- 77 (131)
T 1elr_A 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ------------- 77 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH-------------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH-------------
Confidence 35678899999999999987753 44677777888888889999999888 2211 1211 11100
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 79 a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
...+|..+-..+...|++++|.+.|++..+.. |+......+-.
T Consensus 78 --~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 78 --IAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 14677788888999999999999999988754 55554444433
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.58 E-value=0.0012 Score=44.45 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=89.8
Q ss_pred hHhhcCChhHHHHHHHHhHHcCC-Cc-cHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchh----hHHHHHHHHHh--
Q 039275 4 GYSQAGRFNEALEPFGKLESLGV-HT-DEVTMVVVLTASSGPGAWILAKEL---QIELDLSSY----SLSSKTSRYAH-- 72 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~----~~~~ll~~~~~-- 72 (153)
.+.+.|++++|++.|+++.+..- .| ....+..+-.++.+.|++++|.+. .....|+.. .+-.+-..+.+
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 57789999999999999977421 12 235666677889999999999988 222234332 12222222322
Q ss_pred ----------------cCCccccc------------hHHHH-----------------HHHHHHHHhcCChHHHHHHHHH
Q 039275 73 ----------------SGRIRLAR------------DPVSC-----------------KAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 73 ----------------~g~~~~a~------------~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~ 107 (153)
.|+.++|. +...+ -.+-..+.+.|++++|...|++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 45566665 22222 2344567889999999999999
Q ss_pred HHHcCCCCCh----hhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDE----VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.+.- |+. ..+..+..++.+.|+.++|.+
T Consensus 173 ~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 173 MLRDY--PDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 98653 432 467788899999999999887
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.57 E-value=0.00016 Score=45.83 Aligned_cols=72 Identities=14% Similarity=0.081 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcC
Q 039275 63 LSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSG 129 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~ 129 (153)
+-.+-..|.+.|++++|. +..+|..+-..+.+.|++++|...|++..+. .| +...+..+-..+.+
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 334455566666666665 5555666666666666666666666655543 23 23445555555555
Q ss_pred CCccccc
Q 039275 130 PGALDFG 136 (153)
Q Consensus 130 ~g~~~~a 136 (153)
.|+.+++
T Consensus 112 ~~~~~~a 118 (150)
T 4ga2_A 112 NDVTDGR 118 (150)
T ss_dssp HCSSSSH
T ss_pred cCChHHH
Confidence 5555443
No 106
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.53 E-value=0.0019 Score=37.48 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=63.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|...|++..+.. +.+...+..+-..+.+.|++++|.+. ...+..+.... +.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------------~~ 76 (112)
T 2kck_A 15 LQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEY-----------------NK 76 (112)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTT-----------------CH
T ss_pred HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccc-----------------hH
Confidence 4667888899999888887652 33566677777778888888888877 32222221100 23
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHcC
Q 039275 83 VSCKAMISGYSQA-GRFNEALEPFGKLESLG 112 (153)
Q Consensus 83 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g 112 (153)
..|..+-..+.+. |++++|.+.|++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 5677777888888 88898888888887654
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.52 E-value=0.00062 Score=48.94 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=65.0
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc--------------HHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD--------------EVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSK 66 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~l 66 (153)
.|.+.|++++|+..|++..+..-... ...|..+-.++.+.|++++|.+. ..- +.|+
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------- 228 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------- 228 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Confidence 57788999999999999877532211 47777778888888898888888 222 2232
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccc
Q 039275 67 TSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 67 l~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a 136 (153)
+...|..+-..+...|++++|.+.|++..+.. | +...+..+-..+.+.|+.+++
T Consensus 229 --------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 229 --------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 22334444455555555555555555544332 2 233444444444445555444
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.52 E-value=0.0007 Score=40.50 Aligned_cols=73 Identities=15% Similarity=0.042 Sum_probs=51.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~ 76 (153)
..+...|++++|.+.+++..+. .+.+...+..+-..+.+.|++++|.+. .. ...| +...+..+...+.+.|+.
T Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 54 AAYSKLGNYAGAVQDCERAICI-DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhchHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 3567889999999999998775 234577788888889999999999988 22 2233 344555566666666554
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.51 E-value=0.0012 Score=42.06 Aligned_cols=90 Identities=17% Similarity=0.038 Sum_probs=56.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCccccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.+.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|.+. +.- +.|+
T Consensus 45 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--------------------- 102 (151)
T 3gyz_A 45 DFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--------------------- 102 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---------------------
Confidence 3455666666666666665431 22345555555566666666666665 222 2222
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
+...|..+-..|.+.|++++|.+.|++..+.. ||.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 45677888889999999999999999988653 544
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.47 E-value=0.00025 Score=47.29 Aligned_cols=91 Identities=13% Similarity=-0.007 Sum_probs=59.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc-HHHHHH----------------HHHHhcCCCchHHHHHH-hhh--hhc-chhh
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD-EVTMVV----------------VLTASSGPGAWILAKEL-QIE--LDL-SSYS 62 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~ 62 (153)
.+.+.|++++|+..|++..+. .|+ ...+.. +-..+.+.|++++|... ..- ..| +...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 467889999999999988764 343 334444 66677888888888887 222 233 3456
Q ss_pred HHHHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcC
Q 039275 63 LSSKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAG 96 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g 96 (153)
+..+-..|...|++++|. +...|..+-..|...|
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 666677777777777776 4455555555544433
No 111
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.47 E-value=0.0015 Score=49.55 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=97.1
Q ss_pred cCChh-------HHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhcch--hhHHHHHHHHHhcCC
Q 039275 8 AGRFN-------EALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDLSS--YSLSSKTSRYAHSGR 75 (153)
Q Consensus 8 ~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~~--~~~~~ll~~~~~~g~ 75 (153)
.|+++ +|.++|++..+.-.+-+...+..+...+.+.|++++|.++ + ....|+. ..|..+...+.+.|+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC
Confidence 68887 8999999887633444688888888999999999999999 2 2234542 478888888888999
Q ss_pred ccccc------------hHHHHHHHH-HHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 76 IRLAR------------DPVSCKAMI-SGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 76 ~~~a~------------~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++|. +...|-... ..+...|+.++|..+|+...+.. | +...|..++....+.|+.++|..
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 88887 111222211 12346899999999999887643 5 56788999999999999999888
No 112
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0023 Score=38.65 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=65.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|++.|++..+.. +.+...|..+-.++.+.|++++|.+. ..-+..+.. +.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~ 72 (126)
T 3upv_A 13 EYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------------------FV 72 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------cH
Confidence 4678899999999999887652 34577788888888889999988887 322222211 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+-..+...|++++|.+.|++..+.
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 56777778888999999999999887754
No 113
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.46 E-value=0.00034 Score=42.10 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=70.2
Q ss_pred hcCChhHHHHHHHHhHHcC--CCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHH
Q 039275 7 QAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPV 83 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 83 (153)
..|++++|+..|++..+.+ -+-+...+..+-..+.+.|++++|.+. ..-+..+.. +..
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~ 62 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-------------------HQA 62 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------chH
Confidence 4688999999999998864 233456777777888999999999988 332222111 235
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHhcC
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLG-VHTDEVTMVVVLAASSG 129 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~ 129 (153)
.|..+-..+...|++++|.+.|++..... -.|+...|...+..+.+
T Consensus 63 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 66778888999999999999999887542 34455556666665554
No 114
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.46 E-value=0.0017 Score=39.73 Aligned_cols=100 Identities=8% Similarity=-0.013 Sum_probs=71.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcch-hhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSS-YSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~-~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.|++++|++.|++..+. -+-+...|..+-.++.+.|++++|.+. ...+ .|+. ..+..+
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~-~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------- 82 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIEL-DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI------------- 82 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH-------------
Confidence 577899999999999998764 234577788888899999999999888 2222 2322 122221
Q ss_pred chHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 80 RDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 80 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
..+|..+-..+...|++++|.+.|++-... .||..+..
T Consensus 83 --a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 83 --AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 246667777889999999999999987754 35544433
No 115
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.46 E-value=0.0009 Score=40.31 Aligned_cols=92 Identities=12% Similarity=-0.057 Sum_probs=67.6
Q ss_pred CccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHH
Q 039275 27 HTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPF 105 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~ 105 (153)
+.+...+..+-..+.+.|++++|.+. ...+..+.. +...|..+-..+...|++++|.+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~ 73 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-------------------DAKLYSNRAACYTKLLEFQLALKDC 73 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-------------------CHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------cHHHHHHHHHHHHHhccHHHHHHHH
Confidence 34556666666777777777777776 222221111 3467778888899999999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 106 GKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 106 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
++..+.. ..+...+..+-..+.+.|++++|.+
T Consensus 74 ~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 74 EECIQLE-PTFIKGYTRKAAALEAMKDYTKAMD 105 (133)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHH
Confidence 9988653 2356778888889999999999988
No 116
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.45 E-value=0.0012 Score=43.00 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=79.6
Q ss_pred hHhhcCChhHHHHHHHHhHH----cCCCc-cHHHHHHHHHHhcCCCchHHHHHH-hh------hhh----cchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLES----LGVHT-DEVTMVVVLTASSGPGAWILAKEL-QI------ELD----LSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~------~~~----~~~~~~~~ll 67 (153)
.|...|++++|...|++... .+..| ....+..+-..+...|++++|.+. .. ... .....+..+-
T Consensus 35 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 114 (203)
T 3gw4_A 35 VYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVA 114 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHH
Confidence 56788999999999998865 22222 345666777788899999999888 11 111 1234567778
Q ss_pred HHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 68 SRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
..+...|++++|. ...++..+-..+...|++++|.+.+++..+
T Consensus 115 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 8899999999998 233467778889999999999999988764
No 117
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.39 E-value=0.0024 Score=45.87 Aligned_cols=135 Identities=14% Similarity=-0.042 Sum_probs=92.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHH----HHHHHHHHhcCCCchHHHHHH-hhhh--h---cc----hhhHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEV----TMVVVLTASSGPGAWILAKEL-QIEL--D---LS----SYSLSSKTSR 69 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~-~~~~--~---~~----~~~~~~ll~~ 69 (153)
.+...|++++|...+++.....-..+.. .++.+-..+...|++++|.+. ...+ . ++ ......+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3567899999999999987653222222 444555667778999998887 1111 1 11 1234566777
Q ss_pred HHhcCCccccc--------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C--ChhhHHHHHH
Q 039275 70 YAHSGRIRLAR--------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVH--T--DEVTMVVVLA 125 (153)
Q Consensus 70 ~~~~g~~~~a~--------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p--~~~t~~~li~ 125 (153)
+...|++++|. ....+..+-..+...|++++|.+.+++.....-. | ...++..+-.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 88899998887 1234555667888999999999999988754321 2 2345777778
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
.+...|++++|..
T Consensus 183 ~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 183 CSLARGDLDNARS 195 (373)
T ss_dssp HHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 8888999999887
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.39 E-value=0.00071 Score=42.54 Aligned_cols=88 Identities=9% Similarity=-0.003 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..+..+-..+...|++++|... ...+..+.. +...|..+-..+...|++++|.+.|++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-------------------NAIYYGNRSLAYLRTECYGYALGDATRAI 74 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555566677777777776 222221110 34667788888999999999999999988
Q ss_pred HcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 110 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
... ..+...+..+-..+.+.|++++|.+
T Consensus 75 ~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 75 ELD-KKYIKGYYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 654 2356778888899999999999988
No 119
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.38 E-value=0.0017 Score=46.97 Aligned_cols=133 Identities=10% Similarity=-0.021 Sum_probs=90.0
Q ss_pred hhHhhcCChhHHHHHHHHhH-----HcCCCccHHHHHHHHHHhcCCCchHHHHHH-hh--------hh-hcchhhHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLE-----SLGVHTDEVTMVVVLTASSGPGAWILAKEL-QI--------EL-DLSSYSLSSKT 67 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~--------~~-~~~~~~~~~ll 67 (153)
..|...|++++|.+.|++.. .........++..+-..+...|++++|.+. .. +. +....++..+-
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 45777888888888887664 144455677778888888888888888777 11 12 22344567777
Q ss_pred HHHHhcCCccccc-----------------hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 039275 68 SRYAHSGRIRLAR-----------------DPVSCKAMISGYSQAGR---FNEALEPFGKLESLGVHT-DEVTMVVVLAA 126 (153)
Q Consensus 68 ~~~~~~g~~~~a~-----------------~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~t~~~li~~ 126 (153)
..|.+.|++++|. ....++.+-..+...|+ +++|..++++. +..| ....+..+-..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 8888888888887 12235566677777788 66666666654 3333 33456677778
Q ss_pred hcCCCccccchh
Q 039275 127 SSGPGALDFGKS 138 (153)
Q Consensus 127 ~~~~g~~~~a~~ 138 (153)
+.+.|++++|.+
T Consensus 349 y~~~g~~~~A~~ 360 (383)
T 3ulq_A 349 YHERKNFQKASA 360 (383)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHCCCHHHHHH
Confidence 888888888876
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.38 E-value=0.0026 Score=39.44 Aligned_cols=88 Identities=19% Similarity=0.139 Sum_probs=55.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|... ..-+..+.. +.
T Consensus 27 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~ 86 (142)
T 2xcb_A 27 NQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-------------------EP 86 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CT
T ss_pred HHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-------------------Cc
Confidence 3556677777777777665531 23455555555666667777777666 222211110 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+-..+...|++++|.+.|+...+.
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667778888999999999999887754
No 121
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.36 E-value=0.0015 Score=37.95 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..+..+-..+.+.|++++|... ...+..+.. +...|..+-..+...|++++|.+.|++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-------------------ESKYWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444555566667777777666 222211110 34567788888999999999999999988
Q ss_pred HcCCC-CChhhHHHHHHHhcCC-Cccccchh
Q 039275 110 SLGVH-TDEVTMVVVLAASSGP-GALDFGKS 138 (153)
Q Consensus 110 ~~g~~-p~~~t~~~li~~~~~~-g~~~~a~~ 138 (153)
+.... .+...+..+...+.+. |++++|.+
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 65311 1477888899999999 99999887
No 122
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.34 E-value=0.0034 Score=39.82 Aligned_cols=88 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|++.|++..+.. +-+...|..+-.++.+.|++++|.+. ..-+..+.. +.
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~ 79 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-------------------YS 79 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------CH
Confidence 5677888888888888887642 23567777777788888888888887 222222111 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+-..+...|++++|.+.|++..+.
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55666777777778888888887777643
No 123
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.33 E-value=0.00063 Score=49.27 Aligned_cols=132 Identities=15% Similarity=0.110 Sum_probs=84.0
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCCCchHHHHHH-hh--------hhhcchhhHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGPGAWILAKEL-QI--------ELDLSSYSLSSKTSR 69 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~-~~--------~~~~~~~~~~~ll~~ 69 (153)
.|...|++++|.+.|++..+. +-++ ...++..+-..+...|++++|.+. .. +.+....++..+-..
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 567788899999888877542 2211 234566666777888888888887 11 222234556667778
Q ss_pred HHhcCCccccc-----------------hHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhc
Q 039275 70 YAHSGRIRLAR-----------------DPVSCKAMISGYSQAGR---FNEALEPFGKLESLGVHT-DEVTMVVVLAASS 128 (153)
Q Consensus 70 ~~~~g~~~~a~-----------------~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~ 128 (153)
|.+.|++++|. ....++.+-..+...|+ +.+|...+++ .+..| ....+..+-..+.
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHH
Confidence 88888888777 22345555556666677 6666666655 22222 2334556777888
Q ss_pred CCCccccchh
Q 039275 129 GPGALDFGKS 138 (153)
Q Consensus 129 ~~g~~~~a~~ 138 (153)
+.|++++|.+
T Consensus 348 ~~g~~~~A~~ 357 (378)
T 3q15_A 348 SSCHFEQAAA 357 (378)
T ss_dssp HTTCHHHHHH
T ss_pred HCCCHHHHHH
Confidence 8888888776
No 124
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.33 E-value=0.0042 Score=43.45 Aligned_cols=133 Identities=9% Similarity=-0.048 Sum_probs=91.1
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCCc-cHHHHHHHHHHhcCC-CchHHHHHH-hhh--hhcc-------hhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVHT-DEVTMVVVLTASSGP-GAWILAKEL-QIE--LDLS-------SYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~-~~~~~a~~~-~~~--~~~~-------~~~~~~ll 67 (153)
.|.+.|++++|+..|++..+. |-.+ -..+++.+-..+... |++++|.+. ..- +.|+ ..+++.+.
T Consensus 86 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 567889999999999887542 2111 145777778888885 999999888 111 1121 34678888
Q ss_pred HHHHhcCCccccc------------hH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHH
Q 039275 68 SRYAHSGRIRLAR------------DP-------VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE------VTMVV 122 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~ 122 (153)
..+.+.|++++|. +. ..|..+...+...|++++|.+.|++..+. .|+. ..+..
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~ 243 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKS 243 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHH
Confidence 9999999999998 11 15677778899999999999999987642 3332 23455
Q ss_pred HHHHhc--CCCccccchh
Q 039275 123 VLAASS--GPGALDFGKS 138 (153)
Q Consensus 123 li~~~~--~~g~~~~a~~ 138 (153)
++.++. ..+++++|..
T Consensus 244 l~~~~~~~~~~~~~~A~~ 261 (292)
T 1qqe_A 244 LIDAVNEGDSEQLSEHCK 261 (292)
T ss_dssp HHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 666664 4455655554
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.32 E-value=0.0033 Score=39.56 Aligned_cols=87 Identities=20% Similarity=0.140 Sum_probs=51.5
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHH
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPV 83 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 83 (153)
+.+.|++++|+..|++..... +.+...+..+-.++.+.|++++|.+. +.-+..+.. +..
T Consensus 31 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------------------~~~ 90 (148)
T 2vgx_A 31 QYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-------------------EPR 90 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CTH
T ss_pred HHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-------------------Cch
Confidence 455566666666666554431 22444444555555566666666555 221111110 446
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
.|..+-..+...|++++|.+.|+...+.
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888999999999999887754
No 126
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00097 Score=48.77 Aligned_cols=135 Identities=10% Similarity=-0.060 Sum_probs=92.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc----------------HHHHHHHHHHhcCCCchHHHHHH-h-----hhhhcch-
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD----------------EVTMVVVLTASSGPGAWILAKEL-Q-----IELDLSS- 60 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~-~-----~~~~~~~- 60 (153)
.+.+.|++++|++.|.+..+..-... ...+..+...|.+.|++++|.+. . .+-.++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 46788999999999999876432111 12367788899999999999988 1 1111111
Q ss_pred ---hhHHHHHHHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CC
Q 039275 61 ---YSLSSKTSRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGV----HT 115 (153)
Q Consensus 61 ---~~~~~ll~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p 115 (153)
.+.+.+-..+...|+.++|. ...++..+...+...|++++|..++++....-. +|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 12222223333445555554 356788899999999999999999999864421 22
Q ss_pred -ChhhHHHHHHHhcCCCccccchh
Q 039275 116 -DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 116 -~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...++..+...|...|++++|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHH
Confidence 34578888899999999999988
No 127
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.31 E-value=0.0013 Score=49.69 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=78.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|++.|++..+. -+-+...+..+-.++.+.|++++|.+. ..-+..+.. +.
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-------------------~~ 74 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-------------------YI 74 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-------------------CH
T ss_pred HHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------CH
Confidence 467889999999999998775 233578888888899999999999988 333332221 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGV-HTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|..+-..|...|++++|.+.|++..+..- .++.......+..+.+.|++++|.+
T Consensus 75 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 75 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778888889999999999988876531 2222222222323666677777765
No 128
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.29 E-value=0.0018 Score=46.58 Aligned_cols=135 Identities=11% Similarity=-0.065 Sum_probs=92.3
Q ss_pred hHhhcCChhHHHHHHHHhHHc----CCC--cc-HHHHHHHHHHhcCCCchHHHHHH-hhhh--------hcchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL----GVH--TD-EVTMVVVLTASSGPGAWILAKEL-QIEL--------DLSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~-~~~~--------~~~~~~~~~ll 67 (153)
.+...|++++|.+.+++..+. +.. |. ...+..+-..+...|++++|... ...+ ......+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 467789999999999887542 322 33 34555666788889999999988 1111 11234566777
Q ss_pred HHHHhcCCccccc--------------hHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhhHHHHHH
Q 039275 68 SRYAHSGRIRLAR--------------DPVSCKA-----MISGYSQAGRFNEALEPFGKLESLGVHT---DEVTMVVVLA 125 (153)
Q Consensus 68 ~~~~~~g~~~~a~--------------~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~ 125 (153)
..+...|++++|. ....|.. ....+...|++++|.+.+++.......+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8889999999888 1112322 2234779999999999998876533221 1234567778
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
.+...|++++|..
T Consensus 262 ~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 262 AQILLGEFEPAEI 274 (373)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 8889999998887
No 129
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=0.0087 Score=36.57 Aligned_cols=92 Identities=13% Similarity=0.105 Sum_probs=55.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCcc----HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTD----EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.+.+.|++++|++.|++..+. .|+ ...+..+-..+.+.|++++|.+. ...+..+..
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------------- 97 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG----------------- 97 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-----------------
T ss_pred HHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-----------------
Confidence 345666777777777666553 344 45555555566666666666665 211111100
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 79 a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
+...|..+-..+...|++++|.+.|++.... .|+..
T Consensus 98 --~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 98 --DVKALYRRSQALEKLGRLDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp --CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCH
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 3355667777788888888888888888754 35433
No 130
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.25 E-value=0.0054 Score=35.74 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=64.2
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccch
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+...|++++|.+.|++..+.. +.+...+..+-..+.+.|++++|... ...+..+.. +
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~ 71 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-------------------W 71 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------------C
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-------------------c
Confidence 35677889999999998887642 33566777777778888888888877 222221110 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
...|..+...+...|++++|.+.|++..+.
T Consensus 72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 356777788889999999999999988754
No 131
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.23 E-value=0.0028 Score=38.55 Aligned_cols=88 Identities=13% Similarity=-0.016 Sum_probs=57.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|+..|++..+.. +.+...+..+-..+...|++++|... ...+..+.. +.
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~ 77 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-------------------SV 77 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-------------------hH
Confidence 4567777777777777766542 23456666666677777777777766 222221111 34
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+-..+...|++++|.+.|++....
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777778888888888888888887643
No 132
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.22 E-value=0.0021 Score=43.99 Aligned_cols=113 Identities=12% Similarity=0.030 Sum_probs=79.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcC--CCccHHHHHHHHHHhcC--------CCchHHHHHH-hh--hhhcch-hhH-----
Q 039275 3 SGYSQAGRFNEALEPFGKLESLG--VHTDEVTMVVVLTASSG--------PGAWILAKEL-QI--ELDLSS-YSL----- 63 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~--------~~~~~~a~~~-~~--~~~~~~-~~~----- 63 (153)
..|.+.|++++|++.|++..+.. -+.....+..+-.++.+ .|++++|... .. ...|+. ...
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 139 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK 139 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH
Confidence 35788999999999999998752 11224455555666666 8999999998 21 123432 233
Q ss_pred ------------HHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhc----------CChHHHHHHHH
Q 039275 64 ------------SSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQA----------GRFNEALEPFG 106 (153)
Q Consensus 64 ------------~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~----------g~~~~a~~~~~ 106 (153)
-.+-..|.+.|++++|. ....+..+...|... |++++|.+.|+
T Consensus 140 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 140 IRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 34467889999999998 234566666677655 89999999999
Q ss_pred HHHHcCCCCCh
Q 039275 107 KLESLGVHTDE 117 (153)
Q Consensus 107 ~m~~~g~~p~~ 117 (153)
+..+.- |+.
T Consensus 220 ~~~~~~--p~~ 228 (261)
T 3qky_A 220 RLLQIF--PDS 228 (261)
T ss_dssp HHHHHC--TTC
T ss_pred HHHHHC--CCC
Confidence 998653 544
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.22 E-value=0.0023 Score=44.72 Aligned_cols=106 Identities=8% Similarity=-0.088 Sum_probs=81.3
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC-cc----HHHHHHHHHHhcCCCchHHHHHH-hh---------hhhc-chhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH-TD----EVTMVVVLTASSGPGAWILAKEL-QI---------ELDL-SSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~~~~a~~~-~~---------~~~~-~~~~~~~ll 67 (153)
.+...|++++|++.|++....... ++ ..+++.+-..+...|++++|... .. +..+ ...++..+.
T Consensus 124 ~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 3u3w_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 345678999999999999874322 22 34688888899999999999988 11 1111 224778888
Q ss_pred HHHHhcCCccccc------------------hHHHHHHHHHHHHhcCC-hHHHHHHHHHHH
Q 039275 68 SRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGR-FNEALEPFGKLE 109 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 109 (153)
..|.+.|++++|. -..+|..+-..+.+.|+ .++|.+.|++..
T Consensus 204 ~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999998 26678888899999995 699999888765
No 134
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.22 E-value=0.0027 Score=37.12 Aligned_cols=90 Identities=14% Similarity=-0.011 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
....+..+-..+...|++++|... ...+..+.. +...|..+-..+...|++++|.+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-------------------NHVLYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-------------------cHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 345566666677778888888777 222211110 345677778888999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+.. ..+...+..+..++.+.|++++|.+
T Consensus 64 ~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 64 TVDLK-PDWGKGYSRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 88654 2256778888889999999999988
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.16 E-value=0.0027 Score=38.84 Aligned_cols=88 Identities=8% Similarity=-0.074 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..+.-.=..+.+.|++++|.+. ..-+..+.. +...|..+-..+.+.|++++|.+.|++..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al 74 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-------------------NAILYSNRAACLTKLMEFQRALDDCDTCI 74 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence 3445555677777888887777 222222211 45678888899999999999999999988
Q ss_pred HcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 110 SLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 110 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.. ..+...|..+-.++...|++++|.+
T Consensus 75 ~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 75 RLD-SKFIKGYIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred Hhh-hhhhHHHHHHHHHHHHCCCHHHHHH
Confidence 653 2356778889999999999999998
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.15 E-value=0.0016 Score=42.70 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=74.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCC-Ccc--------------HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGV-HTD--------------EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll 67 (153)
.+.+.|++++|++.|++..+..- .|+ ...+..+-.++.+.|++++|... ...+..+..
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------ 120 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN------ 120 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc------
Confidence 56788999999999999876421 111 25666677777888888888877 222221111
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccch
Q 039275 68 SRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 68 ~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 137 (153)
+...|..+-..+...|++++|.+.|++..+. .| +...+..+-..+...++.+++.
T Consensus 121 -------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 121 -------------NVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3356667777888889999999998887754 34 4455566666666666666655
No 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.14 E-value=0.0014 Score=47.14 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...|..+-..+.+.|++++|.+.|++..+.. ..+...+..+-.++.+.|++++|..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 251 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARA 251 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5788999999999999999999999998754 2367788889999999999999988
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.14 E-value=0.0013 Score=41.96 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+...|++++|.+.|++..... | +...+..+-.++.+.|++++|..
T Consensus 69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 69 NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 55788889999999999999999999998654 4 46678888899999999999988
No 139
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.09 E-value=0.0063 Score=42.46 Aligned_cols=124 Identities=7% Similarity=-0.081 Sum_probs=88.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcC---CCcc--HHHHHHHHHHhcCCCchHHHHHH-hhh-----hhcc-----hhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLG---VHTD--EVTMVVVLTASSGPGAWILAKEL-QIE-----LDLS-----SYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~~-~~~-----~~~~-----~~~~~~ll 67 (153)
.+...|++++|++.|++..... ..+. ..+|+.+-..+...|++++|... ... ..|+ ..++..+-
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 4567789999999999886532 1222 45888888899999999999988 111 1222 25788888
Q ss_pred HHHHhcCCccccc-----------h-------HHHHHHHHHHHHhcCChHHH-HHHHHHHH----HcCCCCChhhHHHHH
Q 039275 68 SRYAHSGRIRLAR-----------D-------PVSCKAMISGYSQAGRFNEA-LEPFGKLE----SLGVHTDEVTMVVVL 124 (153)
Q Consensus 68 ~~~~~~g~~~~a~-----------~-------~~~~~~li~~~~~~g~~~~a-~~~~~~m~----~~g~~p~~~t~~~li 124 (153)
..|.+.|++++|. + ..+|..+-..+.+.|+.++| ...+++-. ..+-++-...+..+|
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~ 283 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKI 283 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHH
Confidence 9999999999999 2 66788888899999999999 77676643 223333344455555
Q ss_pred HHh
Q 039275 125 AAS 127 (153)
Q Consensus 125 ~~~ 127 (153)
+-+
T Consensus 284 ~~~ 286 (293)
T 2qfc_A 284 SRL 286 (293)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 140
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.03 E-value=0.004 Score=37.38 Aligned_cols=94 Identities=10% Similarity=0.003 Sum_probs=65.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccH---HHHHHHHHHhcCCCchHHHHHH-hhhh--hcchhhHHHHHHHHHhcCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDE---VTMVVVLTASSGPGAWILAKEL-QIEL--DLSSYSLSSKTSRYAHSGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~~~~~~ll~~~~~~g~~~ 77 (153)
.+.+.|++++|.+.|++..+..- .+. ..+..+-..+.+.|++++|... ..-+ .|+...
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------- 74 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK--------------- 74 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT---------------
T ss_pred HHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc---------------
Confidence 56789999999999999877421 122 4566667788899999999988 2222 232210
Q ss_pred ccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 78 LARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 78 ~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
....+..+-..+...|++++|.+.|++..... |+..
T Consensus 75 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 75 ---AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 12455667778888999999999999988653 5443
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.02 E-value=0.007 Score=42.71 Aligned_cols=108 Identities=9% Similarity=0.028 Sum_probs=72.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhh-h-hcc----hhhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIE-L-DLS----SYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-~-~~~----~~~~~~ll~~~~~~g~~ 76 (153)
..+.+.|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..... . .|+ ...+..+=.++.+.|++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 35788999999999999887654 5443333334477899999999999221 1 121 22455556777788888
Q ss_pred cccc---------h--H----HHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 77 RLAR---------D--P----VSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 77 ~~a~---------~--~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
++|. . + ..+...-..+.+.|+.++|..+|+++....
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7776 1 1 133445566777888888888888887653
No 142
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.01 E-value=0.0047 Score=37.40 Aligned_cols=88 Identities=14% Similarity=-0.046 Sum_probs=62.1
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDP 82 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 82 (153)
.+.+.|++++|+..|++..+.. +-+...+..+-.++.+.|++++|... +.-+..+.. +.
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-------------------~~ 85 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-------------------DI 85 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CH
Confidence 5677888888888888887641 23556666666677888888888877 332222221 33
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..|..+-..+...|++++|.+.|++..+.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777888889999999999999988743
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.98 E-value=0.0024 Score=40.21 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
...+..+-..+.+.|++++|... ..-+..+.. +...|..+-..+...|++++|.+.|++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-------------------DSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34445555666777888887777 221111110 4466778888899999999999999998
Q ss_pred HHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 109 ESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 109 ~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.... | +...+..+-.++...|++++|.+
T Consensus 82 l~l~--p~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 82 AVMD--IXEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp HHHS--TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcC--CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 8653 4 55677888889999999999988
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.94 E-value=0.039 Score=36.57 Aligned_cols=129 Identities=12% Similarity=-0.007 Sum_probs=88.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC----chHHHHHH-hhhhhc-chhhHHHHHHHHHh----c
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG----AWILAKEL-QIELDL-SSYSLSSKTSRYAH----S 73 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~-~~~~~~-~~~~~~~ll~~~~~----~ 73 (153)
.|...+++++|++.|++..+.| ++..+..+=..+.. + ++++|.++ +....+ +...+..|-..|.. .
T Consensus 27 ~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~ 102 (212)
T 3rjv_A 27 TWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGA 102 (212)
T ss_dssp HHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSS
T ss_pred HHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCc
Confidence 4567899999999999998876 44555555555666 6 89999998 333333 34455556566655 6
Q ss_pred CCccccc----------h----HHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC-C---
Q 039275 74 GRIRLAR----------D----PVSCKAMISGYSQ----AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP-G--- 131 (153)
Q Consensus 74 g~~~~a~----------~----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g--- 131 (153)
+++++|. + ...+..|-..|.. .+++++|.+.|++-.+.+ ++...+..+-..|.+. |
T Consensus 103 ~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~ 180 (212)
T 3rjv_A 103 TDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFI 180 (212)
T ss_dssp CCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTB
T ss_pred cCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCC
Confidence 6777776 3 6888888888888 889999999999987762 2333455555555432 2
Q ss_pred --ccccchh
Q 039275 132 --ALDFGKS 138 (153)
Q Consensus 132 --~~~~a~~ 138 (153)
+.++|.+
T Consensus 181 ~~d~~~A~~ 189 (212)
T 3rjv_A 181 EPNKQKALH 189 (212)
T ss_dssp CCCHHHHHH
T ss_pred CCCHHHHHH
Confidence 6676666
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.92 E-value=0.0039 Score=37.89 Aligned_cols=91 Identities=8% Similarity=-0.103 Sum_probs=68.4
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~ 106 (153)
.+...+..+-..+.+.|++++|... ..-+..+.. +...|..+-..+...|++++|...|+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~ 67 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-------------------VAVYYTNRALCYLKMQQPEQALADCR 67 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-------------------cHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4566677777777888888888777 222222111 34678888889999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 107 KLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 107 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..+.. .-+...+..+-.++...|++++|..
T Consensus 68 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 68 RALELD-GQSVKAHFFLGQCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhC-chhHHHHHHHHHHHHHHhhHHHHHH
Confidence 988754 2256778888899999999999988
No 146
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.92 E-value=0.011 Score=41.28 Aligned_cols=123 Identities=8% Similarity=-0.108 Sum_probs=88.7
Q ss_pred CccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCccccc-----------h-HHHHHHHHH
Q 039275 27 HTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLAR-----------D-PVSCKAMIS 90 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a~-----------~-~~~~~~li~ 90 (153)
+.+...+..+-..+.+.|++++|... + ....| +...+..+...+.+.|++++|. + .........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 44556666667778889999999998 2 22344 4457778889999999999998 2 222222333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh-------------HHHHHHHHHHHh
Q 039275 91 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS-------------NIFLTTAIIEMY 150 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-------------~~~~~~~li~~y 150 (153)
.+...++.++|.+.|++..... ..+...+..+-..+.+.|++++|.+ +...+..|...|
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 4677888899999998887653 2356778888899999999999998 255666666555
No 147
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.89 E-value=0.054 Score=40.53 Aligned_cols=125 Identities=11% Similarity=-0.012 Sum_probs=63.0
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC----CCchHHHHHH-hhhhh-cchhhHHHHHHHHHh----cCCcc
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKEL-QIELD-LSSYSLSSKTSRYAH----SGRIR 77 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~-~~~~~-~~~~~~~~ll~~~~~----~g~~~ 77 (153)
.+++++|++.|++..+.|. +..+..+=..+.. .+++++|.++ +.-.. .+...+..|-..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY---TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHH
Confidence 5667777777776665542 3333333334443 5666666666 11111 123334444444544 45555
Q ss_pred ccc----------hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC----CCccccchh
Q 039275 78 LAR----------DPVSCKAMISGYSQ----AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG----PGALDFGKS 138 (153)
Q Consensus 78 ~a~----------~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~ 138 (153)
+|. +...+..|-..|.. .++.++|.+.|++..+.| +...+..+-..+.+ .++.++|.+
T Consensus 133 ~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 133 ESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 555 44445455555554 556666666666655543 33344444444443 455555444
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.0039 Score=37.54 Aligned_cols=89 Identities=9% Similarity=-0.057 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
...+...-..+.+.|++++|.+. ...+..+.. +...|..+-..+.+.|++++|.+.|++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-------------------DARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------------------ChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455555666777777777776 222221111 3467888889999999999999999998
Q ss_pred HHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 109 ESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 109 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+.. .-+...+..+-.++...|++++|.+
T Consensus 65 l~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 65 IEKD-PNFVRAYIRKATAQIAVKEYASALE 93 (126)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 8654 2246678888889999999999988
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.86 E-value=0.0023 Score=41.04 Aligned_cols=97 Identities=9% Similarity=-0.019 Sum_probs=71.3
Q ss_pred hcCCCchHHHHHH-hh--hh-hcchhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHH-HHhcCCh--HH
Q 039275 40 SSGPGAWILAKEL-QI--EL-DLSSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISG-YSQAGRF--NE 100 (153)
Q Consensus 40 ~~~~~~~~~a~~~-~~--~~-~~~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~-~~~~g~~--~~ 100 (153)
+...|++++|.+. .. .. +.+...+..+-..|...|++++|. +...|..+-.. +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455667766665 11 12 335567888889999999999998 56677777777 7789998 99
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 101 ALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 101 a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|.+.|++..... | +...+..+...+...|++++|..
T Consensus 100 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 100 TRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHH
Confidence 999999998654 4 45677788889999999999988
No 150
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.83 E-value=0.026 Score=37.71 Aligned_cols=110 Identities=14% Similarity=0.012 Sum_probs=72.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHcC-CCccH-HHHHHHHHHh------------------cCCCchHHHHHH-hh--hhhcc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLG-VHTDE-VTMVVVLTAS------------------SGPGAWILAKEL-QI--ELDLS 59 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g-~~p~~-~~~~~ll~~~------------------~~~~~~~~a~~~-~~--~~~~~ 59 (153)
..|.+.|++++|++.|++..+.. -.|.. ..+-.+-.++ ...|++++|... +. ...|+
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~ 128 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC
Confidence 46788999999999999997642 11221 1222222222 246788888887 11 12233
Q ss_pred hh-hH-----------------HHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHH
Q 039275 60 SY-SL-----------------SSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 60 ~~-~~-----------------~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~ 106 (153)
.. .+ -.+-..|.+.|++++|. ....+..+...+.+.|+.++|.+.++
T Consensus 129 ~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 129 SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 22 13445678889998888 13567888899999999999999999
Q ss_pred HHHHcC
Q 039275 107 KLESLG 112 (153)
Q Consensus 107 ~m~~~g 112 (153)
.+...+
T Consensus 209 ~l~~~~ 214 (225)
T 2yhc_A 209 IIAANS 214 (225)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 988765
No 151
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.82 E-value=0.013 Score=38.70 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=78.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhc-chhhHHHHHHHHHhcCCcccc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-Q--IELDL-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.|.+.|++++|+..|++..+.. +-+...+..+-..+...|++++|.+. + ....| +...+..+-..|...|+.+.+
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 5778999999999999997752 34677888888899999999999999 2 22334 344566666665544432221
Q ss_pred c-----------hH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHH
Q 039275 80 R-----------DP--VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVV 122 (153)
Q Consensus 80 ~-----------~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 122 (153)
. +. ..|-.+-.++...|++++|...|++..+ +.|+......
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 142 KLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 1 11 2233344456678999999999999875 4577654443
No 152
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.82 E-value=0.0039 Score=39.51 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
+...+..+-..+.+.|++++|.+. ..-+..+.. +...|..+-..+.+.|++++|.+.|++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-------------------NPIYLSNRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-------------------CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 455666666677777888887777 222221111 346788888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 108 LESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 108 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+.. .-+...|..+-.++.+.|++++|.+
T Consensus 71 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 71 ATVVD-PKYSKAWSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHccCHHHHHH
Confidence 88654 2257778888999999999999988
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.82 E-value=0.004 Score=38.57 Aligned_cols=87 Identities=16% Similarity=0.136 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 32 TMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
.+..+-..+.+.|++++|... ..-+..+.. +...|..+-..+.+.|++++|...|+....
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------------------DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444566777888888777 221211111 446677888889999999999999999986
Q ss_pred cCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 111 LGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 111 ~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.. .-+...+..+-.++...|++++|.+
T Consensus 81 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 81 MD-INEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp HC-TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 54 2245567788889999999999988
No 154
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.016 Score=42.20 Aligned_cols=136 Identities=4% Similarity=-0.124 Sum_probs=96.1
Q ss_pred hhHhhcCChhHHHHHHHHhHHc-CCCccH---HHHHHHHHH-hcCCCchHHHHHH---------hhhhhc-chhhHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESL-GVHTDE---VTMVVVLTA-SSGPGAWILAKEL---------QIELDL-SSYSLSSKT 67 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~ll~~-~~~~~~~~~a~~~---------~~~~~~-~~~~~~~ll 67 (153)
..|.+.|++++|.+.+.+.... +-.++. ......+.. +...|.++.+.++ ..+-.+ -..++..+.
T Consensus 63 ~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la 142 (434)
T 4b4t_Q 63 QLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLA 142 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 5688999999999999888542 111222 233344443 4456788888877 111111 134667788
Q ss_pred HHHHhcCCccccc------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-CC---ChhhHHHH
Q 039275 68 SRYAHSGRIRLAR------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESL--GV-HT---DEVTMVVV 123 (153)
Q Consensus 68 ~~~~~~g~~~~a~------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p---~~~t~~~l 123 (153)
..|...|++++|. ....|..++..|...|++++|..++++.... .+ .| -...+..+
T Consensus 143 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 143 TLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 9999999999988 4568999999999999999999999887632 12 22 24567777
Q ss_pred HHHhcCCCccccchh
Q 039275 124 LAASSGPGALDFGKS 138 (153)
Q Consensus 124 i~~~~~~g~~~~a~~ 138 (153)
...+...|+++.|..
T Consensus 223 g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHTTSSSCHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 788889999998877
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=96.80 E-value=0.0038 Score=38.49 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.++..+-..+...|++++|.+. ...+.... +.++... ...++..+-..+...|++++|.+.+++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----------EFGDKAA--ERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----------HhCCchH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666677778888888877 22111100 0000000 23577788888999999999999999876
Q ss_pred HcC----CCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 110 SLG----VHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 110 ~~g----~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.. -.+ ....+..+-..+...|++++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 431 111 24567778889999999999988
No 156
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.74 E-value=0.075 Score=39.74 Aligned_cols=15 Identities=33% Similarity=0.142 Sum_probs=7.3
Q ss_pred cCChHHHHHHHHHHH
Q 039275 95 AGRFNEALEPFGKLE 109 (153)
Q Consensus 95 ~g~~~~a~~~~~~m~ 109 (153)
.+++++|.+.|++..
T Consensus 272 ~~d~~~A~~~~~~a~ 286 (490)
T 2xm6_A 272 AKEPLKALEWYRKSA 286 (490)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 444555555554444
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.03 Score=34.06 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHH-h--hhhhcc----hhhHHHHHHHHHhcCCccccchHHHHHHHH
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKEL-Q--IELDLS----SYSLSSKTSRYAHSGRIRLARDPVSCKAMI 89 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~li 89 (153)
.+...+..+-..+.+.|++++|.+. . ....|+ ...+..+...|.+.|++++|. ..|...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~--~~~~~~~ 92 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAE--TEASKAI 92 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHH--HHHHHHH
Confidence 3455556666666677777777666 1 122333 345556666667777776655 4444433
No 158
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.039 Score=40.62 Aligned_cols=42 Identities=5% Similarity=-0.208 Sum_probs=24.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 96 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|+.++|.+++++..... ..+...+..+-..+.+.|++++|.+
T Consensus 227 ~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp ---CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHH
Confidence 45566666666655432 2244456666667777777777766
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.65 E-value=0.0097 Score=44.55 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=69.2
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC-cc-------------HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH-TD-------------EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTS 68 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-p~-------------~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~ 68 (153)
.|.+.|++++|+..|++..+..-. ++ ...|..+-.++.+.|++++|.+. ..-+..+..
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------- 349 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA------- 349 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-------
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------
Confidence 577899999999999988763211 11 46666677777778888887777 222221111
Q ss_pred HHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 69 RYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 69 ~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-.+|...|++++|...|++..+. .| +...+..+-.++.+.++.+++.+
T Consensus 350 ------------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 350 ------------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345556666777777777777777776643 34 33445555555555555555443
No 160
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.61 E-value=0.011 Score=43.18 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=71.3
Q ss_pred hHhhcCChhHHHHHHHHhHHc---------------CCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL---------------GVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKT 67 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll 67 (153)
.+.+.|++++|++.|++..+. --+.+...|..+-.++.+.|++++|.+. ..-+..+..
T Consensus 232 ~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------ 305 (370)
T 1ihg_A 232 TFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS------ 305 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT------
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch------
Confidence 567889999999999888651 1112335555555666666777776666 222221110
Q ss_pred HHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccch
Q 039275 68 SRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 68 ~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 137 (153)
+...|..+-..|...|++++|.+.|++..+. .| +...+..+-..+.+.++.+++.
T Consensus 306 -------------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 306 -------------NTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788889999999999999988764 35 4444555555555555555443
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.58 E-value=0.02 Score=35.99 Aligned_cols=94 Identities=13% Similarity=0.012 Sum_probs=59.5
Q ss_pred hHhhcCChhHHHHHHHHhHHc-------C----------CCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL-------G----------VHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSS 65 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~-------g----------~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ 65 (153)
.+.+.|++++|++.|.+..+. . -+.+...|..+-.++.+.|++++|... ..-+..+..
T Consensus 20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---- 95 (162)
T 3rkv_A 20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET---- 95 (162)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc----
Confidence 567889999999999887653 0 011224455555566666666666665 222211111
Q ss_pred HHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 039275 66 KTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV 118 (153)
Q Consensus 66 ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 118 (153)
+...|..+-..+...|++++|.+.|++.... .|+..
T Consensus 96 ---------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 96 ---------------NEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred ---------------chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 3456677778888888888888888887754 46544
No 162
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.014 Score=43.63 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=63.8
Q ss_pred hhHhhcCChhHHHHHHHHhHHc---CCCc----cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcC
Q 039275 3 SGYSQAGRFNEALEPFGKLESL---GVHT----DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSG 74 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g 74 (153)
..+.+.|++++|.+++++.... -+.| ...+++.+..+|...|++++|..+ +.-+..-..++.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg---------- 364 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP---------- 364 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC----------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC----------
Confidence 3456788999999999888643 1222 346788888888889999999888 111111000000
Q ss_pred CccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 75 ~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.+.-....+++.|-..|...|++++|..++++-.
T Consensus 365 -~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 365 -GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp -SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0000034778888899999999999999888765
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.54 E-value=0.006 Score=36.27 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
...+..+-..+...|++++|... ...+..+.. +...|..+-..+...|++++|...|++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-------------------NMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-------------------cHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34556666677778888888777 222221111 3356777888889999999999999998
Q ss_pred HHcCC--CCC----hhhHHHHHHHhcCCCccccchh
Q 039275 109 ESLGV--HTD----EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 109 ~~~g~--~p~----~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..... .++ ...+..+...+.+.|++++|.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 75531 223 6778888899999999999988
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.47 E-value=0.016 Score=37.84 Aligned_cols=123 Identities=7% Similarity=-0.063 Sum_probs=71.0
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hcchhhHHHH-HHHHHhcCCccccchHH
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DLSSYSLSSK-TSRYAHSGRIRLARDPV 83 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~~~~~~~~l-l~~~~~~g~~~~a~~~~ 83 (153)
.|.++++.+.|+.-... .......+..+-..+.+.|++++|.+. ..-+ .|+...+... +.. ........
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~------~~~~~~~~ 89 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD------KKKNIEIS 89 (198)
T ss_dssp -----CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH------HHHHHHHH
T ss_pred hhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHH------HHHHHHHH
Confidence 44455555555322111 111234455555666777888887777 2111 1211100000 000 00000236
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.|..+-..+.+.|++++|.+.+++..+.. ..+...+..+-.++...|++++|.+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHH
Confidence 78888899999999999999999988653 2356778888889999999999988
No 165
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.45 E-value=0.018 Score=40.05 Aligned_cols=77 Identities=12% Similarity=-0.163 Sum_probs=54.4
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhh--hc-chhhHHHHHHHHHhcCCccc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIEL--DL-SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~--~~-~~~~~~~ll~~~~~~g~~~~ 78 (153)
..+.+.|++++|++.|++..+. -+.+...|..+-..+.+.|++++|.+. ..-+ .| +...+..+-..|.+.|++++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3567899999999999988775 223677778888888999999999988 2222 23 33445555566666666666
Q ss_pred cc
Q 039275 79 AR 80 (153)
Q Consensus 79 a~ 80 (153)
|.
T Consensus 91 A~ 92 (281)
T 2c2l_A 91 AI 92 (281)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 166
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.45 E-value=0.019 Score=42.97 Aligned_cols=92 Identities=11% Similarity=-0.114 Sum_probs=60.3
Q ss_pred hcCChhHHHHHHHHhHHc---CCCc----cHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 7 QAGRFNEALEPFGKLESL---GVHT----DEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
+.|++++|..++++.... -+.| ...+++.+..+|...|++++|..+ +.-+..-..++. .+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-----------~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-----------VYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-----------SSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-----------CCC
Confidence 356788999998877542 1222 247788888899999999999888 211111000000 000
Q ss_pred cchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 79 ARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 79 a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
-....+|+.|-..|...|++++|..++++-.
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 0034778889999999999999999988765
No 167
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0097 Score=34.55 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=59.0
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHH
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFG 106 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~ 106 (153)
++...+..+-..+.+.|++++|.+. ..-+..+.. +...|..+-..+.+.|++++|.+.|+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~ 62 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-------------------NPVGYSNKAMALIKLGEYTQAIQMCQ 62 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3456666777777888888888877 222221111 33667788888999999999999999
Q ss_pred HHHHcCCCCC-------hhhHHHHHHHhcCCCccccch
Q 039275 107 KLESLGVHTD-------EVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 107 ~m~~~g~~p~-------~~t~~~li~~~~~~g~~~~a~ 137 (153)
+..+. .|+ ...+..+-.++...|+.+.+.
T Consensus 63 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 63 QGLRY--TSTAEHVAIRSKLQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHTS--CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCS
T ss_pred HHHHh--CCCccHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 98754 454 344555555565566655554
No 168
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.021 Score=32.99 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=40.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.+.|++++|++.|++..+. -+.+...+..+-.++.+.|++++|.+.
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 60 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQM 60 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 567899999999999998775 234677788888899999999999988
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.27 E-value=0.02 Score=34.03 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+...|++++|.+.|++..+... -+...+..+-.++.+.|++++|.+
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 456788888999999999999999999987642 246677888889999999999988
No 170
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0081 Score=43.12 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=54.7
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHH------------------HHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEV------------------TMVVVLTASSGPGAWILAKEL-QIELDLSSYSLS 64 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------------~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~ 64 (153)
.+.+.|++++|+..|++..+. .|+.. .|..+-.++.+.|++++|... ..-+..+..
T Consensus 188 ~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--- 262 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK--- 262 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---
T ss_pred HHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Confidence 466789999999999987653 34433 444444555555555555555 111111110
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 65 SKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
+...|..+-.+|...|++++|.+.|++..+
T Consensus 263 ----------------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 263 ----------------NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ----------------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446677777888888888888888887763
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.20 E-value=0.015 Score=35.35 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 32 TMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
.+.-+=..+.+.|++++|.+. ..-+..+.. +...|+.+-..|.+.|++++|.+.|++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-------------------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-------------------NITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444555667777777777777 222222111 446788888999999999999999998864
Q ss_pred cC--CCCC----hhhHHHHHHHhcCCCccccchh
Q 039275 111 LG--VHTD----EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 111 ~g--~~p~----~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.. ..++ ..+|..+-.++...|++++|.+
T Consensus 71 ~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32 1222 2356777788889999999887
No 172
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.11 E-value=0.033 Score=41.04 Aligned_cols=130 Identities=14% Similarity=-0.102 Sum_probs=72.5
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcc-hhhHHHHHHHHHhcCC--------
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLS-SYSLSSKTSRYAHSGR-------- 75 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~-~~~~~~ll~~~~~~g~-------- 75 (153)
.|++++|.+.+++.... -+.+...+..+-..+.+.|++++|.+. -....|+ ..++..+-..|...+.
T Consensus 226 ~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ----CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45667777777766554 234556666677777778888877777 1122332 2233333322221110
Q ss_pred -----------ccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--hHHHHHH-HhcC
Q 039275 76 -----------IRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEV--TMVVVLA-ASSG 129 (153)
Q Consensus 76 -----------~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--t~~~li~-~~~~ 129 (153)
.++|. +..+|..+-..+...|++++|.+.|++..+....|... .+..+.. ...+
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~ 384 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQ 384 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 11111 34567778888999999999999999987665444321 1222221 2346
Q ss_pred CCccccchh
Q 039275 130 PGALDFGKS 138 (153)
Q Consensus 130 ~g~~~~a~~ 138 (153)
.|+.++|.+
T Consensus 385 ~~~~~~Ai~ 393 (472)
T 4g1t_A 385 MKCEDKAIH 393 (472)
T ss_dssp SSCHHHHHH
T ss_pred CCCHHHHHH
Confidence 788877766
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.09 E-value=0.049 Score=32.41 Aligned_cols=54 Identities=15% Similarity=0.045 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD----EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+..+-..+.+.|++++|.+.|++..+.. |+ ...+..+-.++.+.|++++|..
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~ 97 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQ 97 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 456677788899999999999999998754 43 4557778889999999999988
No 174
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.07 E-value=0.016 Score=43.98 Aligned_cols=99 Identities=8% Similarity=-0.111 Sum_probs=67.5
Q ss_pred hcCCCchHHHHHH------------hhhhhcchhhHHHHHHHHHhcCCccccc--------------------hHHHHHH
Q 039275 40 SSGPGAWILAKEL------------QIELDLSSYSLSSKTSRYAHSGRIRLAR--------------------DPVSCKA 87 (153)
Q Consensus 40 ~~~~~~~~~a~~~------------~~~~~~~~~~~~~ll~~~~~~g~~~~a~--------------------~~~~~~~ 87 (153)
+...|++++|..+ ....+....+++.|...|...|++++|. ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578899998887 1112234567888889999999999988 6778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCChhh----HHHHHHHhcCCCccccchh
Q 039275 88 MISGYSQAGRFNEALEPFGKLESL---GVHTDEVT----MVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t----~~~li~~~~~~g~~~~a~~ 138 (153)
|-..|...|++++|..++++-..- -+-||... ...+-.+...++.+++|+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888876522 12343322 2333345555566666555
No 175
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.02 E-value=0.021 Score=36.53 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=69.6
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHh--cCCCchHHHHHH-hh--hhhc-chhhHHHHHHHHHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTAS--SGPGAWILAKEL-QI--ELDL-SSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~a~~~-~~--~~~~-~~~~~~~ll~~~~~~g~~ 76 (153)
..+.+.|++++|+..|++..+. .|++..+. +...+ ...+...++.+. +. ...| +...+..+-..+.+.|++
T Consensus 48 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~-~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 48 DCLLETKQFELAQELLATIPLE--YQDNSYKS-LIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHTTCHHHHHHHHTTCCGG--GCCHHHHH-HHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHHhhhc--cCChHHHH-HHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Confidence 3577899999999999988654 23443332 22111 111111112222 22 2334 456788888999999999
Q ss_pred cccc--------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 77 RLAR--------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 77 ~~a~--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
++|. +...+..+...+...|+.++|...|.+..
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 9998 24578899999999999999999998764
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.01 E-value=0.1 Score=33.58 Aligned_cols=107 Identities=17% Similarity=0.148 Sum_probs=71.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCC-c-----c-----HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVH-T-----D-----EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYA 71 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~-p-----~-----~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~ 71 (153)
.+.+.|++++|++.|++..+..-. | + ...|.-+-.++.+.|++++|... ..-+ ..|-
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-----------~l~n 88 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-----------HYFN 88 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----------Hhhh
Confidence 467889999999999998764211 0 2 23777778888999999998887 2222 2233
Q ss_pred hcCCccccchHHHH----HHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhhHHH
Q 039275 72 HSGRIRLARDPVSC----KAMISGYSQAGRFNEALEPFGKLES-----LGVHTDEVTMVV 122 (153)
Q Consensus 72 ~~g~~~~a~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 122 (153)
+.+.++.. +...| ...=.++...|++++|...|++-.+ .|+.+.......
T Consensus 89 ~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 89 RRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred ccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 33333221 34566 7888899999999999999988753 355555444433
No 177
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.80 E-value=0.07 Score=29.48 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 85 CKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
|..+-..+...|++++|.+.|++..+.. ..+...+..+-..+.+.|++++|.+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 64 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIE 64 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 3334444444455555555554444322 1123334444444444555444444
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.72 E-value=0.09 Score=30.80 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=49.9
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHH
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMIS 90 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~ 90 (153)
++|++.|++..+.. +.+...+..+-..+...|++++|.+. +.-+..+.. +...|..+-.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~ 61 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-------------------YSVAWKWLGK 61 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-------------------cHHHHHHHHH
Confidence 45777787776642 34567777788888999999999888 222221110 2244555566
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 039275 91 GYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 91 ~~~~~g~~~~a~~~~~~m~~ 110 (153)
.+...|++++|.+.|++...
T Consensus 62 ~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 62 TLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666677777766666553
No 179
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.72 E-value=0.065 Score=30.90 Aligned_cols=55 Identities=13% Similarity=-0.076 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..|..+-..+...|++++|.+.|++..+... -+...|..+-.++.+.|++++|.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555666666666666665554321 123345555555666666665555
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.71 E-value=0.14 Score=31.52 Aligned_cols=104 Identities=15% Similarity=0.055 Sum_probs=62.4
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhh-cchhhHHHHHHHHHh----cCCcc
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELD-LSSYSLSSKTSRYAH----SGRIR 77 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~-~~~~~~~~ll~~~~~----~g~~~ 77 (153)
+..-.+++++|++.|++.-+.|. |+.. +=..+..-+.+++|.++ +.... -+......|-..|.. .++++
T Consensus 4 G~g~~~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 4 GGTVKKDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CcCCccCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHH
Confidence 34445678999999999988873 3333 44555666677778777 22222 233444444444444 45555
Q ss_pred ccc----------hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 039275 78 LAR----------DPVSCKAMISGYSQ----AGRFNEALEPFGKLESLG 112 (153)
Q Consensus 78 ~a~----------~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 112 (153)
+|. +...+..|-..|.. .+++++|.+.|++-.+.|
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555 45555555556655 667777777776665554
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.66 E-value=0.034 Score=38.69 Aligned_cols=82 Identities=7% Similarity=-0.092 Sum_probs=58.1
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH-hhh--hhc-chhhHHHHHHHHHhcCCccccc------------hHHHHHHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL-QIE--LDL-SSYSLSSKTSRYAHSGRIRLAR------------DPVSCKAMISGY 92 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~-~~~~~~~ll~~~~~~g~~~~a~------------~~~~~~~li~~~ 92 (153)
+...+..+-..+.+.|++++|.+. ... ..| +...+..+-..|.+.|++++|. +...|..+-..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 456667777788889999999988 222 234 4556666777777777777776 566677777777
Q ss_pred HhcCChHHHHHHHHHHHH
Q 039275 93 SQAGRFNEALEPFGKLES 110 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~ 110 (153)
...|++++|.+.|++..+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777654
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.61 E-value=0.025 Score=34.08 Aligned_cols=56 Identities=5% Similarity=0.005 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+...|++++|...|++..+.. | +...+..+-.++.+.|++++|..
T Consensus 50 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 50 REEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAALA 106 (121)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 44667778888999999999999999988653 5 45677788889999999998877
No 183
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.55 E-value=0.13 Score=34.01 Aligned_cols=123 Identities=10% Similarity=-0.014 Sum_probs=83.0
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhc-chhhHHHHHHHHHhcC----Cccccc-----
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDL-SSYSLSSKTSRYAHSG----RIRLAR----- 80 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~-~~~~~~~ll~~~~~~g----~~~~a~----- 80 (153)
.+|++.|++.-+.| ++..+..+=..+...+++++|.++ +.-..+ +...+..|-..|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 35677888877764 455565666666668999999999 333322 34455566666666 6 666666
Q ss_pred -----hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHhcC----CCccccchh
Q 039275 81 -----DPVSCKAMISGYSQ----AGRFNEALEPFGKLESLGVH-TDEVTMVVVLAASSG----PGALDFGKS 138 (153)
Q Consensus 81 -----~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~ 138 (153)
+...+..|-..|.. .+++++|.+.|++-.+.|.. .....+..+-..|.. .+++++|.+
T Consensus 79 A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 79 AVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 66777777777776 88999999999998876632 014555666666655 667777766
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.35 E-value=0.058 Score=29.82 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
...+..+-..+.+.|++++|.+. ..-+..+.. +...|..+-..+.+.|++++|.+.|++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------------------NAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45555666677777888888777 222221110 3356777888899999999999999998
Q ss_pred HHc
Q 039275 109 ESL 111 (153)
Q Consensus 109 ~~~ 111 (153)
.+.
T Consensus 70 ~~~ 72 (91)
T 1na3_A 70 LEL 72 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 185
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.04 E-value=0.18 Score=28.96 Aligned_cols=24 Identities=17% Similarity=-0.043 Sum_probs=13.8
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+...+..+-..+.+.|++++|.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~ 29 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALAL 29 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344455555556666666666665
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.81 E-value=0.19 Score=35.92 Aligned_cols=101 Identities=8% Similarity=-0.007 Sum_probs=70.5
Q ss_pred HHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCccccc---hHHHHHHHHHHHHhcCChHHHHH
Q 039275 30 EVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIRLAR---DPVSCKAMISGYSQAGRFNEALE 103 (153)
Q Consensus 30 ~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~~a~---~~~~~~~li~~~~~~g~~~~a~~ 103 (153)
...+..+-..+.+.|++++|... ..- ..|+...+ ...++.+++. ....|..+-..+.+.|++++|.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~ 251 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIG 251 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-------TCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-------hhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455666788889999998887 222 23332211 1111111111 22478889999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 104 PFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 104 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
.+++..+.. .-+...+..+-.++...|++++|..
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999988653 2356788889999999999999988
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=94.74 E-value=0.22 Score=31.01 Aligned_cols=99 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccc-------cchHHHHHHHHHHHHhcCChHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRL-------ARDPVSCKAMISGYSQAGRFNEAL 102 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~-------a~~~~~~~~li~~~~~~g~~~~a~ 102 (153)
..+...-..+.+.|++++|.+. ...+..... ....++... -.+...|..+-..+.+.|++++|.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDT--------LILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 3445555677788888888887 111111000 000000000 004578888999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 103 EPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 103 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+++..... ..+...|..+-.++...|++++|..
T Consensus 84 ~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 84 ETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHH
Confidence 9999988653 2356778888999999999999998
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.34 E-value=0.16 Score=37.93 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...|..+-..+.+.|++++|.+.|++..+.. .-+...+..+-.++.+.|++++|..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~ 372 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKG 372 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 5788899999999999999999999998654 2356778888899999999999988
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.21 E-value=0.1 Score=30.51 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+...|..+-..+...|++++|.+.|++..+.. ..+...+..+-.++.+.|++++|..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 45678888899999999999999999988654 2346678888889999999999988
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.19 E-value=0.6 Score=33.85 Aligned_cols=98 Identities=7% Similarity=-0.056 Sum_probs=67.4
Q ss_pred HHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCcccc-----chHHHHHHHHHHHHhcCChHHHHHH
Q 039275 31 VTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLA-----RDPVSCKAMISGYSQAGRFNEALEP 104 (153)
Q Consensus 31 ~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a-----~~~~~~~~li~~~~~~g~~~~a~~~ 104 (153)
..+..+-..+.+.|++++|.+. ..-+....... .....+++ .+...|..+-..+.+.|++++|.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------HHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------cccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 3455566677888888888887 22221000000 00000000 0567888999999999999999999
Q ss_pred HHHHHHcCCCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 105 FGKLESLGVHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 105 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++..+. .| +...+..+-.++.+.|++++|.+
T Consensus 296 ~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 296 CLEALEI--DPSNTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp HHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHH
Confidence 9998864 35 56778888889999999999988
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.17 E-value=0.67 Score=36.69 Aligned_cols=134 Identities=8% Similarity=-0.078 Sum_probs=87.0
Q ss_pred HhhcCChhHHHHHHHHhHHcC---------CCc------------cHHHHHHHHHHhcCCCchHHHHHH-hhhh----hc
Q 039275 5 YSQAGRFNEALEPFGKLESLG---------VHT------------DEVTMVVVLTASSGPGAWILAKEL-QIEL----DL 58 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g---------~~p------------~~~~~~~ll~~~~~~~~~~~a~~~-~~~~----~~ 58 (153)
.-+.|++++|.++|+++.... -.| ....|...+....+.+..+.|.++ .... .+
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 456789999999999987641 013 123566667776777888888888 2211 11
Q ss_pred chhhHHHHHHHHHhc-CCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChhhHHHH
Q 039275 59 SSYSLSSKTSRYAHS-GRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHT--DEVTMVVV 123 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~-g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~l 123 (153)
...+|......--+. ++.+.|. +...|...+......|+.+.|..+|+........| ....|...
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 223333222222233 3466666 66777788888888899999999999887654322 34567777
Q ss_pred HHHhcCCCccccchh
Q 039275 124 LAASSGPGALDFGKS 138 (153)
Q Consensus 124 i~~~~~~g~~~~a~~ 138 (153)
+..=.+.|+.+.+..
T Consensus 548 ~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 548 IFFESKVGSLNSVRT 562 (679)
T ss_dssp HHHHHHTCCSHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 777777788777665
No 192
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.06 E-value=1.1 Score=35.40 Aligned_cols=120 Identities=10% Similarity=-0.033 Sum_probs=85.9
Q ss_pred hhcCChhHHHHHHHHhHHc-C-CCccHHHHHHHHHHhcCCCchHHHHHH-hhhh---hcchhhHHHHHHHHHhcCCcccc
Q 039275 6 SQAGRFNEALEPFGKLESL-G-VHTDEVTMVVVLTASSGPGAWILAKEL-QIEL---DLSSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~-g-~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~---~~~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.|..+.|.++|.+..+. + ..+........|.-.. .++.+.|.++ ..++ +.+...+...+......|+.+.|
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHH
Confidence 4568899999999999876 2 3344455445555332 3558888888 3333 34555667788877888888877
Q ss_pred c---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 039275 80 R---------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASS 128 (153)
Q Consensus 80 ~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 128 (153)
+ ....|...+..-.+.|+.+.+..+.+.+.+.- |+......+++-|.
T Consensus 524 R~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 524 KSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhc
Confidence 7 23679999999999999999999999998764 66556666666554
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.77 E-value=0.18 Score=37.53 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESL-----G-VHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...+++.+...|...|++++|..++++...- | -.| ...+++.+-..|..+|++++|..
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4578999999999999999999999987632 2 233 45668889999999999999998
No 194
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.76 E-value=0.33 Score=36.28 Aligned_cols=58 Identities=9% Similarity=-0.153 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCC-ChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESL-----G-VHT-DEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...+++.|...|...|++++|..++++...- | -.| ...+++.+-..|..+|++++|..
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEK 403 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHH
Confidence 4578999999999999999999999988632 3 234 45668899999999999999998
No 195
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.39 E-value=0.76 Score=34.52 Aligned_cols=77 Identities=9% Similarity=-0.056 Sum_probs=54.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcc-hhhHHHHHHH--HHhcCCc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLS-SYSLSSKTSR--YAHSGRI 76 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~-~~~~~~ll~~--~~~~g~~ 76 (153)
..|.+.|++++|++.|++..+.. +-+...+..+-.++.+.|++++|.+. +.- ..|+ ...+..+-.+ +.+.|++
T Consensus 48 ~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~ 126 (477)
T 1wao_1 48 LAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126 (477)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999998752 34567788888899999999999998 222 2333 3344444444 6666777
Q ss_pred cccc
Q 039275 77 RLAR 80 (153)
Q Consensus 77 ~~a~ 80 (153)
++|.
T Consensus 127 ~~A~ 130 (477)
T 1wao_1 127 ERAI 130 (477)
T ss_dssp CCC-
T ss_pred HHHh
Confidence 7666
No 196
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.13 E-value=0.51 Score=27.95 Aligned_cols=59 Identities=8% Similarity=-0.039 Sum_probs=45.0
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKTS 68 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll~ 68 (153)
+.=++.+-++.+-...+.|++.+....|.+|-+.+++..|..+ +........+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 3445666677777888999999999999999999999999998 4444444555666553
No 197
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.04 E-value=0.13 Score=40.56 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred hhcCChhHHHH-HHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----
Q 039275 6 SQAGRFNEALE-PFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---- 80 (153)
Q Consensus 6 ~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~---- 80 (153)
...+++++|.+ ++..+. +......++..+-+.|.+++|.++-.... .-.....+.|++++|.
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~-------~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD-------QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH-------HHHHHHHHHTCHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc-------hheehhhhcCCHHHHHHHHH
Confidence 34567777766 442211 01122555555566666666665511100 0012223444444443
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 039275 81 ---DPVSCKAMISGYSQAGRFNEALEPFGKL 108 (153)
Q Consensus 81 ---~~~~~~~li~~~~~~g~~~~a~~~~~~m 108 (153)
+...|..+-..+.+.|+++.|.+.|..+
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455555555555555555555555544
No 198
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.82 E-value=0.25 Score=34.81 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=72.3
Q ss_pred HHHHhcCCCchHHHHHHhhh---hhcchhhHHHHHHHHHhcCCccccc----------h----HHHHHHHHHHHHhcCCh
Q 039275 36 VLTASSGPGAWILAKELQIE---LDLSSYSLSSKTSRYAHSGRIRLAR----------D----PVSCKAMISGYSQAGRF 98 (153)
Q Consensus 36 ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~----------~----~~~~~~li~~~~~~g~~ 98 (153)
.-..+...|++++|.++... ..|+....-.+-..+.+.+++++|. + ...+-.+=..+...|++
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~ 187 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALF 187 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCH
Confidence 34566778899999999221 1233324444555788888888887 1 23566677889999999
Q ss_pred HHHHHHHHHHHHcCCCCCh--hhHHHHHHHhcCCCccccchh
Q 039275 99 NEALEPFGKLESLGVHTDE--VTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 99 ~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~ 138 (153)
++|++.|++.......|.. ......-.++.++|+.++|..
T Consensus 188 ~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 188 TEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998744333652 245566678888999999887
No 199
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.60 E-value=1.4 Score=28.80 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=55.8
Q ss_pred HhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----
Q 039275 5 YSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR---- 80 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~---- 80 (153)
..+.|+++.|.++-+.+ -+...|..+-....+.|+++-|++...... .+..+.-.|...|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----SFDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----CHHHHHHHHHHhCCHHHHHHHHH
Confidence 46789999999998766 367889999999899999888888722111 1223333333333332221
Q ss_pred ---hHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 81 ---DPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 81 ---~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
..--+|.-...+...|+++++.++|.+
T Consensus 85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 85 IAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 112234444555556666666666644
No 200
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=92.17 E-value=2.7 Score=31.13 Aligned_cols=103 Identities=18% Similarity=0.074 Sum_probs=54.6
Q ss_pred HhhcC---ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcC----CCchHHHHHH-hhhhhcchhhHHHHHHH-H--Hhc
Q 039275 5 YSQAG---RFNEALEPFGKLESLGVHTDEVTMVVVLTASSG----PGAWILAKEL-QIELDLSSYSLSSKTSR-Y--AHS 73 (153)
Q Consensus 5 ~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~-~~~~~~~~~~~~~ll~~-~--~~~ 73 (153)
|.+.| +.++|++.|++..+.|..... .+..+-..|.. .+++++|.++ +.-.+-+...+..|-.. | ...
T Consensus 186 ~~~~g~~~~~~~A~~~~~~aa~~g~~~a~-~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 186 YQKKQQPEQQAELLKQMEAGVSRGTVTAQ-RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGG
T ss_pred HHHcCCcccHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Confidence 44456 777777777777766643332 22222333322 2567777777 22223334444444444 2 345
Q ss_pred CCccccc----------hHHHHHHHHHHHHhcC-----ChHHHHHHHHHHH
Q 039275 74 GRIRLAR----------DPVSCKAMISGYSQAG-----RFNEALEPFGKLE 109 (153)
Q Consensus 74 g~~~~a~----------~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~ 109 (153)
+++++|. +...+..|-..|. .| ++++|.+.|++-.
T Consensus 265 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 6666665 4455555555444 44 7777777766554
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.14 E-value=1.3 Score=34.81 Aligned_cols=24 Identities=25% Similarity=0.041 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHhcCCCchHHHHHH
Q 039275 29 DEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 29 ~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
+...|..+-..+.+.++++.|.+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~ 703 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEA 703 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHH
Confidence 455666666666666666666665
No 202
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.97 E-value=0.4 Score=30.75 Aligned_cols=93 Identities=16% Similarity=0.072 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCchHHHHHH-h--hhhhcchhhHHHHHHHHHhcCCccccc-----hHHHHHHHHHHHHhcCChHHHHH
Q 039275 32 TMVVVLTASSGPGAWILAKEL-Q--IELDLSSYSLSSKTSRYAHSGRIRLAR-----DPVSCKAMISGYSQAGRFNEALE 103 (153)
Q Consensus 32 ~~~~ll~~~~~~~~~~~a~~~-~--~~~~~~~~~~~~ll~~~~~~g~~~~a~-----~~~~~~~li~~~~~~g~~~~a~~ 103 (153)
.+...-..+.+.|++++|.+. . -.+.|+. ... ++. +...|+.+-.++.+.|++++|..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~--~~~------------~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~ 78 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTM--PPE------------EAFDHAGFDAFCHAGLAEALAGLRSFDEALH 78 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS--CTT------------SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--cch------------hhhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence 344445566778888888887 2 2223331 000 011 34589999999999999999999
Q ss_pred HHHHHHHc-----CCCCCh-hhH----HHHHHHhcCCCccccchh
Q 039275 104 PFGKLESL-----GVHTDE-VTM----VVVLAASSGPGALDFGKS 138 (153)
Q Consensus 104 ~~~~m~~~-----g~~p~~-~t~----~~li~~~~~~g~~~~a~~ 138 (153)
.++.-.+. .+.|+. ..| ...-.++..+|++++|..
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 99988764 236754 455 677889999999999988
No 203
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=91.86 E-value=2.6 Score=31.18 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 81 DPVSCKAMISGYSQAG---RFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
++..+..|-..|...| +.++|.+.|+.-.+.| .++...+..+-..|..
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~ 225 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGD 225 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC
Confidence 3445666666667777 7777777777776665 3334333344444433
No 204
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.62 E-value=0.53 Score=27.30 Aligned_cols=49 Identities=8% Similarity=-0.165 Sum_probs=40.0
Q ss_pred hHhhcCChhHHHHHHHHhHHc------CCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESL------GVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.+.|++++|..+|+...+. .-.+...++..+-.++.+.|+++.|...
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 567889999999999887653 1235677888888999999999999988
No 205
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.85 E-value=1.2 Score=27.94 Aligned_cols=56 Identities=9% Similarity=-0.026 Sum_probs=39.6
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----hhhhhcchhhHHHHH
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----QIELDLSSYSLSSKT 67 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~ll 67 (153)
=+..+-++.+....+.|++.+....|.+|-+.+++..|..+ +....+...+|..++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 34455555556677888888888889998888888888888 444445555565554
No 206
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.64 E-value=0.67 Score=33.96 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=46.6
Q ss_pred HHHHHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhhHHH
Q 039275 65 SKTSRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLES-----LGVHTDEVTMVV 122 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~ 122 (153)
.++..+.+.|+.+++. +...|..+|.++.+.|+..+|.+.|+...+ -|+.|+..+-..
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4556677788877776 777899999999999999999999998753 399998875433
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.07 E-value=0.018 Score=43.97 Aligned_cols=130 Identities=12% Similarity=0.072 Sum_probs=84.6
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHh-----------------hh-------hh
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ-----------------IE-------LD 57 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~-----------------~~-------~~ 57 (153)
|.+..+.|.+++-++.+.-.++..- ++.+=+.|+-+|++.+++.+.+++- .+ +-
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 5566777888887777744444433 3344457888888888877766661 11 11
Q ss_pred cchhhHHHHHHHHHhcCCccccc-------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC
Q 039275 58 LSSYSLSSKTSRYAHSGRIRLAR-------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP 130 (153)
Q Consensus 58 ~~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 130 (153)
-+...|..|...+.+.|++..|. ++.||--+-.+|...+++.-|.-.--.+. +.|| ....++..|-..
T Consensus 168 s~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~ 242 (624)
T 3lvg_A 168 NNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDR 242 (624)
T ss_dssp GGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTT
T ss_pred HhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhC
Confidence 13344555666777777777766 88899999999999999888776555554 1232 234556667777
Q ss_pred Cccccchh
Q 039275 131 GALDFGKS 138 (153)
Q Consensus 131 g~~~~a~~ 138 (153)
|.+++-..
T Consensus 243 G~f~ELIs 250 (624)
T 3lvg_A 243 GYFEELIT 250 (624)
T ss_dssp CCCTTSTT
T ss_pred CCHHHHHH
Confidence 77776555
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.92 E-value=0.53 Score=26.37 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=38.6
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHH-HHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEV-TMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.+.+.|++++|++.|++..+.. +.+.. .+..+-.++.+.|++++|.+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~ 57 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNN 57 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5678999999999999987752 23455 677777788889999999888
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=89.62 E-value=0.98 Score=28.87 Aligned_cols=102 Identities=10% Similarity=-0.008 Sum_probs=62.9
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCch----------HHHHHH-hhhhhcchhhHHHHHHHHHhcC
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAW----------ILAKEL-QIELDLSSYSLSSKTSRYAHSG 74 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~----------~~a~~~-~~~~~~~~~~~~~ll~~~~~~g 74 (153)
.+.+.+++|++.+++..+.. +-+...|..+=.++.+.+++ ++|... +.-+..|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~------------- 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK------------- 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-------------
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-------------
Confidence 45667888888888886642 33566666666666666554 355555 333322221
Q ss_pred CccccchHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC
Q 039275 75 RIRLARDPVSCKAMISGYSQA-----------GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG 129 (153)
Q Consensus 75 ~~~~a~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 129 (153)
....|..+=.+|... |++++|.+.|++-.+. .|+...|...+...-+
T Consensus 79 ------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 79 ------KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK 136 (158)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT
T ss_pred ------cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 223444455555444 5899999999988864 6888777776665433
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.38 E-value=1.7 Score=24.10 Aligned_cols=29 Identities=21% Similarity=0.340 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 84 SCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 84 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
.|..+-..+...|++++|.+.|++..+..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 66677777888888888888888887653
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=87.59 E-value=5.5 Score=29.15 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 77888888777788899999999999999876 888888777888889999999988
No 212
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=86.16 E-value=4.9 Score=30.34 Aligned_cols=122 Identities=11% Similarity=-0.049 Sum_probs=77.2
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHH--HHHHHhcCCCchHHHHHH-hhhhh--c-chhhHHHHHHHHHhcCCcccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMV--VVLTASSGPGAWILAKEL-QIELD--L-SSYSLSSKTSRYAHSGRIRLA 79 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~~-~~~~~--~-~~~~~~~ll~~~~~~g~~~~a 79 (153)
.+.+.++.|.++|++....+ ++..+|. ..+.... .++.+.|.++ +.++. | +...+...+....+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 35677999999999882222 2333333 3333322 2257778887 33322 2 234456667777788888877
Q ss_pred c--------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--C---CCCC------------hhhHHHHHHHhcCC
Q 039275 80 R--------DPVSCKAMISGYSQAGRFNEALEPFGKLESL--G---VHTD------------EVTMVVVLAASSGP 130 (153)
Q Consensus 80 ~--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g---~~p~------------~~t~~~li~~~~~~ 130 (153)
+ ....|...+..-...|+.+.+..++++.... + -.|- .-++..+++.|.-.
T Consensus 374 R~l~er~~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~ 449 (493)
T 2uy1_A 374 RALFKRLEKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFL 449 (493)
T ss_dssp HHHHHHSCCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhh
Confidence 6 3677888888888889999999988888631 1 1121 25677788887443
No 213
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.69 E-value=1.8 Score=31.71 Aligned_cols=59 Identities=14% Similarity=-0.017 Sum_probs=42.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH----------hhhhhcchhh
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL----------QIELDLSSYS 62 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~----------~~~~~~~~~~ 62 (153)
..+...|++++|+.....+... .+.+...+..+|.++.+.|+..+|.+. +-|++|+..+
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566778888888877777543 445677888888888888888888776 4566776644
No 214
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=85.04 E-value=5.4 Score=25.24 Aligned_cols=90 Identities=10% Similarity=-0.024 Sum_probs=53.8
Q ss_pred hcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC---chHHHHHH-hhhhhcc-hhhHHHHHHHHHhcCCccccch
Q 039275 7 QAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG---AWILAKEL-QIELDLS-SYSLSSKTSRYAHSGRIRLARD 81 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~-~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~ 81 (153)
..+....+.+-|.+..+.|. ++..+--.+-.++++.+ +++++..+ +.-++.+ ...- .
T Consensus 10 ~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~-----------------r 71 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQ-----------------R 71 (152)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHH-----------------H
T ss_pred CHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccch-----------------H
Confidence 33456677777777766665 66666666667778877 56677766 1111111 0000 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDE 117 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 117 (153)
...| .|--++.+.|++++|.+.++.+.+. .|+.
T Consensus 72 d~lY-~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n 104 (152)
T 1pc2_A 72 DYVF-YLAVGNYRLKEYEKALKYVRGLLQT--EPQN 104 (152)
T ss_dssp HHHH-HHHHHHHHTSCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHH-HHHHHHHHccCHHHHHHHHHHHHhc--CCCC
Confidence 1223 3445668888888888888888764 4644
No 215
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.56 E-value=9.3 Score=27.55 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 86 KAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 86 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
..+-..|.+.+++.+|..-| + .|-.++...|..++--+.+.+
T Consensus 140 ~~ig~~~~~e~~~~~Ae~H~--i--lg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 140 HVVGTLYVEEGEFEAAEKHL--V--LGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHH--T--TSCTTHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHccCCHHHHHHHH--H--hcCCchHHHHHHHHHHHHHhc
Confidence 34446667777777777665 2 244455456655544444333
No 216
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=83.42 E-value=9.7 Score=26.86 Aligned_cols=129 Identities=7% Similarity=-0.097 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH--HHHHH-hhhhh---cchhhHHHHHHHHHhcCC------c
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI--LAKEL-QIELD---LSSYSLSSKTSRYAHSGR------I 76 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~a~~~-~~~~~---~~~~~~~~ll~~~~~~g~------~ 76 (153)
+++++++++++++.+. -+-|...|+.---.+.+.+.++ ++.++ ..-+. .|-..|+..-..+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 6778888888888664 2345556655545555555555 55555 22222 233344443333333333 3
Q ss_pred cccc------------hHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC--CCCChhhHHHHHHHhcCCCccccchh
Q 039275 77 RLAR------------DPVSCKAMISGYSQAGRFNE-ALEPFGKLESLG--VHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 77 ~~a~------------~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+++. |...|+-+-..+.+.|+... +.++..++...+ -..+...+..+.+.+.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 3333 77777777777777777444 444555544322 12355666777777777777777766
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=83.23 E-value=4 Score=23.40 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=48.8
Q ss_pred ccHHHHHHHHHHhcCCCchHHHHHH-hhh---hhcchhhHHHHHHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHH
Q 039275 28 TDEVTMVVVLTASSGPGAWILAKEL-QIE---LDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALE 103 (153)
Q Consensus 28 p~~~~~~~ll~~~~~~~~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~ 103 (153)
.+..-+-.+-..+.+.++++.|..+ +.- ..++.. ........+..|-.++.+.|++++|..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---------------~~~~~~~i~~~L~~~~~~~g~~~~A~~ 67 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---------------STIDKVSVLDYLSYAVYQQGDLDKALL 67 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------------CSSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---------------CcccHHHHHHHHHHHHHHccCHHHHHH
Confidence 3445555666777888899998888 111 111100 001144677888889999999999999
Q ss_pred HHHHHHHcCCCCChhh
Q 039275 104 PFGKLESLGVHTDEVT 119 (153)
Q Consensus 104 ~~~~m~~~g~~p~~~t 119 (153)
.+++..+. .|+...
T Consensus 68 ~~~~al~l--~P~~~~ 81 (104)
T 2v5f_A 68 LTKKLLEL--DPEHQR 81 (104)
T ss_dssp HHHHHHHH--CTTCHH
T ss_pred HHHHHHhc--CCCCHH
Confidence 99888753 565543
No 218
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.54 E-value=10 Score=30.59 Aligned_cols=104 Identities=12% Similarity=0.010 Sum_probs=62.5
Q ss_pred hhcCC-hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCc--hHHHHHHhhhh----------hcchh----hH---HH
Q 039275 6 SQAGR-FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGA--WILAKELQIEL----------DLSSY----SL---SS 65 (153)
Q Consensus 6 ~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~----------~~~~~----~~---~~ 65 (153)
...|+ .+.|+++|+++....-.-+......++..+.+.++ ++...-+...+ .+... .. ..
T Consensus 259 ~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 259 AITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp HTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 34445 47799999999775322222223344444444442 22221121111 11110 01 12
Q ss_pred HH----HHHHhcCCccccc------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 66 KT----SRYAHSGRIRLAR------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 66 ll----~~~~~~g~~~~a~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
|| +.+...|+++.|. +-.+|-.|...|...|+++.|+-.+..+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33 4456688888888 78999999999999999999999998884
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.71 E-value=3.4 Score=26.09 Aligned_cols=48 Identities=15% Similarity=-0.001 Sum_probs=27.9
Q ss_pred hHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 4 GYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
.....|+-++..++...+.. +.+|++...-.+-+||.+.|+..++.++
T Consensus 100 ~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 34455555555555555422 3456666666666677777776666666
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=81.27 E-value=8.1 Score=24.44 Aligned_cols=124 Identities=8% Similarity=-0.027 Sum_probs=83.7
Q ss_pred hhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH--hhhhhcchh---hHHHHHHHHHhcCCccccc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL--QIELDLSSY---SLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~---~~~~ll~~~~~~g~~~~a~ 80 (153)
.-.|.+++..++..+..+. -+...||.+|--....-+.+-..+. .-|---|.. ..-.+++.|.+.+...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~s--- 91 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLN--- 91 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCC---
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchH---
Confidence 3467788888888877553 3455566555544444444444444 222122222 1235677777777653
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccchh
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
...+.-+..+..+|+-|+-.++..++.. +.+|+......+-+||.+.|+..++.+
T Consensus 92 --e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 92 --EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHH
Confidence 4667788899999999999999999643 447788888899999999999988877
No 221
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=80.41 E-value=6 Score=22.39 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
......+-..+.+.|++++|.+.|+.+.+..
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3444556677899999999999999998654
No 222
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.27 E-value=9 Score=32.20 Aligned_cols=135 Identities=10% Similarity=0.011 Sum_probs=81.8
Q ss_pred hHhhcCChhHHHHHHHHhHH----cCCCc------------------cHHHHHHHHHHhcCCCchHHHHHH-----hhhh
Q 039275 4 GYSQAGRFNEALEPFGKLES----LGVHT------------------DEVTMVVVLTASSGPGAWILAKEL-----QIEL 56 (153)
Q Consensus 4 ~~~~~g~~~~a~~~~~~m~~----~g~~p------------------~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~ 56 (153)
.|...|++++|.+.|.+.-. ....+ -..=|..++.-+-+.+.++.+.++ ....
T Consensus 851 ~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~ 930 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE 930 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC
T ss_pred HHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 57789999999999976521 11000 112366777788888888888877 1111
Q ss_pred --hc--chhhHHHHHHHHHhcCCccccc-----------hHHHHHHHHHHHHhcCChHH------------HHHHHHHHH
Q 039275 57 --DL--SSYSLSSKTSRYAHSGRIRLAR-----------DPVSCKAMISGYSQAGRFNE------------ALEPFGKLE 109 (153)
Q Consensus 57 --~~--~~~~~~~ll~~~~~~g~~~~a~-----------~~~~~~~li~~~~~~g~~~~------------a~~~~~~m~ 109 (153)
.+ ....|..+.+.....|++++|- ...+...||...|..|+.++ +.+++...-
T Consensus 931 ~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kA 1010 (1139)
T 4fhn_B 931 TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKA 1010 (1139)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHH
Confidence 11 1226788899999999999997 35566667777776665544 334443322
Q ss_pred HcC--CCCChhhHHHHHHHhcCCCccccchh
Q 039275 110 SLG--VHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 110 ~~g--~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
+.. +.....=|..|-......|++..|-.
T Consensus 1011 r~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 1011 FQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred HhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 111 11111225666666667777777766
No 223
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=78.26 E-value=1.2 Score=23.50 Aligned_cols=37 Identities=8% Similarity=-0.004 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHh-cCCCchH
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTAS-SGPGAWI 47 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~ 47 (153)
.++|.+.|.+|.+..-.+...||...|..+ ++..++-
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~ 39 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYW 39 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccc
Confidence 478999999998776667789999999988 6666554
No 224
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=77.82 E-value=22 Score=27.38 Aligned_cols=122 Identities=11% Similarity=-0.108 Sum_probs=80.9
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC--chHHHHHH-hhhh---hcchhhHHHHHHHHHhcC-Cccccc---
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG--AWILAKEL-QIEL---DLSSYSLSSKTSRYAHSG-RIRLAR--- 80 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~-~~~~---~~~~~~~~~ll~~~~~~g-~~~~a~--- 80 (153)
+++++++++++.+.. +-+...|+.--..+.+.+ +++++.++ ..-+ +.|...|+..--.+.+.| ..+++.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 889999999997753 346667776666677777 66888888 2222 234456666655666666 444444
Q ss_pred ---------hHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcCCCcccc
Q 039275 81 ---------DPVSCKAMISGYSQA--------------GRFNEALEPFGKLESLGVHT-DEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~ 135 (153)
+...|+..-..+.+. +.++++.+.+++.... .| |...|.-.--.+.+.+..++
T Consensus 168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 788888877776663 5578888888877754 46 55666666666666665433
No 225
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.27 E-value=9.3 Score=28.50 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=82.0
Q ss_pred CChhHHHHHHHHhHHc-----CCCccHHHHHHHHHHhcCCCchHHHHHH------hhhhhcchh--hHHHHHHHHHhcCC
Q 039275 9 GRFNEALEPFGKLESL-----GVHTDEVTMVVVLTASSGPGAWILAKEL------QIELDLSSY--SLSSKTSRYAHSGR 75 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~a~~~------~~~~~~~~~--~~~~ll~~~~~~g~ 75 (153)
|+++.|++-+..+.+. ...-.......++..|.+.++|+...+. ++|-.+... ..+.++.......+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888888777543 3444567788888889999998887665 222222111 11222222222332
Q ss_pred ccccc---------------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHhcC
Q 039275 76 IRLAR---------------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTD-----EVTMVVVLAASSG 129 (153)
Q Consensus 76 ~~~a~---------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~ 129 (153)
.+... .......|...+...|++.+|.++++++...=...+ ...+...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22111 334456778889999999999999999974422222 2356677778888
Q ss_pred CCccccchh
Q 039275 130 PGALDFGKS 138 (153)
Q Consensus 130 ~g~~~~a~~ 138 (153)
.+++.+|..
T Consensus 190 ~~d~~~a~~ 198 (445)
T 4b4t_P 190 KGDYSQATV 198 (445)
T ss_dssp HTCHHHHHH
T ss_pred CCCHHHHHH
Confidence 888888876
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=76.11 E-value=7.4 Score=25.30 Aligned_cols=95 Identities=14% Similarity=-0.002 Sum_probs=49.2
Q ss_pred HHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhcCCccccc----hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 039275 37 LTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHSGRIRLAR----DPVSCKAMISGYSQAGRFNEALEPFGKLESLG 112 (153)
Q Consensus 37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 112 (153)
+.-..+.|+++.|.++-... .+...|..|-....+.|+++-|. ...-|..+.--|...|+.++-.++-+.-...|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g 90 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRE 90 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCc
Confidence 33445668888888772222 45567777777777777776665 22233334444444444444333322222222
Q ss_pred CCCChhhHHHHHHHhcCCCccccchh
Q 039275 113 VHTDEVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 113 ~~p~~~t~~~li~~~~~~g~~~~a~~ 138 (153)
-++..+..+.-+|+++++.+
T Consensus 91 ------~~n~af~~~l~lGdv~~~i~ 110 (177)
T 3mkq_B 91 ------DFGSMLLNTFYNNSTKERSS 110 (177)
T ss_dssp ------CHHHHHHHHHHHTCHHHHHH
T ss_pred ------cHHHHHHHHHHcCCHHHHHH
Confidence 24444444545555555554
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=75.08 E-value=13 Score=26.34 Aligned_cols=58 Identities=14% Similarity=0.085 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCC-Cccccchh
Q 039275 81 DPVSCKAMISGYSQ-----AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGP-GALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~ 138 (153)
+...|..|-..|.+ -|+.++|.+.|++-.+-+-.-+..++...-..++.. |+.+.+.+
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~ 261 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDE 261 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHH
Confidence 44566666666666 377777777777766543111255555666666664 66666655
No 228
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.88 E-value=7.1 Score=23.09 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
++....+.+.+|-|-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 44 ~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 44 EPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 6777778888888888888888888877643 2233455666554
No 229
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.07 E-value=13 Score=31.26 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCccccc-----------------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 63 LSSKTSRYAHSGRIRLAR-----------------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~-----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
|..++..|-+.+.++.+. ....|..++.++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 445566666666655544 2235777778888888888887777777655443 445666777
Q ss_pred HhcCCCccccchh
Q 039275 126 ASSGPGALDFGKS 138 (153)
Q Consensus 126 ~~~~~g~~~~a~~ 138 (153)
.+|..|..+.-..
T Consensus 980 ~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 980 QLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHCCHHHHHH
T ss_pred HHHhCCChhhhhC
Confidence 7776665554433
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=70.98 E-value=22 Score=25.21 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=50.6
Q ss_pred hhhHHHHHHHHHhc-----CCccccc-------------hHHHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCC--CChh
Q 039275 60 SYSLSSKTSRYAHS-----GRIRLAR-------------DPVSCKAMISGYSQA-GRFNEALEPFGKLESLGVH--TDEV 118 (153)
Q Consensus 60 ~~~~~~ll~~~~~~-----g~~~~a~-------------~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~--p~~~ 118 (153)
...|..|-..|.+. |+.++|. +..++-..-..+++. |+.+++.+.+++-.....+ |+..
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 45788899999995 8998888 367777777888885 9999999999999988777 7765
Q ss_pred hHHH
Q 039275 119 TMVV 122 (153)
Q Consensus 119 t~~~ 122 (153)
..+.
T Consensus 279 lan~ 282 (301)
T 3u64_A 279 LLVI 282 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 231
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=70.08 E-value=8.3 Score=23.39 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...++.-.|.++++.+++.+...+..|.=..++.+.+.|.+.+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 45666667778889999999999888788888988889999998887654
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.88 E-value=18 Score=26.88 Aligned_cols=103 Identities=11% Similarity=-0.036 Sum_probs=61.9
Q ss_pred hhHhhcCChhHHHHHHHHhHHc--CCCcc---HHHHHHHHHHhcCCCchHHHHHHhhhh---------hcc--hhhHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESL--GVHTD---EVTMVVVLTASSGPGAWILAKELQIEL---------DLS--SYSLSSK 66 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~---------~~~--~~~~~~l 66 (153)
..|.+.|++.+|.+++..+... |..+. ...+.-.+..|...+++..|..+-... .|+ ...+...
T Consensus 145 ~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~ 224 (445)
T 4b4t_P 145 EIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLL 224 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 4577889999999999998643 32222 356666677888889999888871111 111 1233445
Q ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCChHHHHHHHHH
Q 039275 67 TSRYAHSGRIRLARDPVSCKAMISGYSQAGRFNEALEPFGK 107 (153)
Q Consensus 67 l~~~~~~g~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~ 107 (153)
+..+...+++.+|. ..|--+..++...++......++..
T Consensus 225 ~~~~~~e~~y~~a~--~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 225 VKISLHKREYLEVA--QYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHCCHHHHH--HHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHH--HHHHHHHhcccccCCHHHHHHHHHH
Confidence 55555666666544 4555555555555555544444433
No 233
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=69.65 E-value=4.3 Score=21.24 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=19.2
Q ss_pred hcCChHHHHHHHHHHHHcC-CCCChh
Q 039275 94 QAGRFNEALEPFGKLESLG-VHTDEV 118 (153)
Q Consensus 94 ~~g~~~~a~~~~~~m~~~g-~~p~~~ 118 (153)
..=+++.|...|.+++..| +.|+++
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 3568899999999998665 666654
No 234
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.63 E-value=34 Score=25.21 Aligned_cols=91 Identities=14% Similarity=0.000 Sum_probs=57.5
Q ss_pred hhHhhcCChhHHHHHHHHhHHc--CCCccHHHHHHHHHHhcCCCchHHHHHHhhhh------hcchhhHHHHHHHHHhcC
Q 039275 3 SGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLTASSGPGAWILAKELQIEL------DLSSYSLSSKTSRYAHSG 74 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~~~~~~ll~~~~~~g 74 (153)
..|.+.|++++|.+.|.+++.. +...-...+-.++..+...+++..+...-... .++...-+
T Consensus 139 ~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~---------- 208 (429)
T 4b4t_R 139 EYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN---------- 208 (429)
T ss_dssp HHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH----------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH----------
Confidence 4578999999999999999765 33344566777778888888888887771110 11111111
Q ss_pred CccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 75 RIRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 75 ~~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
....|..++ +...+++.+|-+.|-+....
T Consensus 209 ------~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 209 ------RYKTYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp ------HHHHHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 123343333 34567888888888776544
No 235
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=67.23 E-value=16 Score=23.05 Aligned_cols=56 Identities=5% Similarity=0.042 Sum_probs=37.4
Q ss_pred hHhhcC---ChhHHHHHHHHhHHcCCCc-c-HHHHHHHHHHhcCCCchHHHHHH---hhhhhcch
Q 039275 4 GYSQAG---RFNEALEPFGKLESLGVHT-D-EVTMVVVLTASSGPGAWILAKEL---QIELDLSS 60 (153)
Q Consensus 4 ~~~~~g---~~~~a~~~~~~m~~~g~~p-~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~ 60 (153)
++++++ ++++++.+|+...+.. .| + ...+-.+=-++.+.+++++|.+. --.++|+-
T Consensus 41 ~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 41 CLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 456666 6779999999998865 34 3 23333333466999999999998 33345533
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=66.17 E-value=1.2 Score=34.34 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=64.9
Q ss_pred chhhHHHHHHHHHhcCCccccc-------hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCC
Q 039275 59 SSYSLSSKTSRYAHSGRIRLAR-------DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPG 131 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~g~~~~a~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 131 (153)
...+|+.|-+++...+.+.+|. |+..|.-+|....+.|++++-.++++.-++.. -+...=+.++-+|++.+
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 3457999999999999999988 99999999999999999999998887766553 33344568999999999
Q ss_pred ccccchh
Q 039275 132 ALDFGKS 138 (153)
Q Consensus 132 ~~~~a~~ 138 (153)
+..+-++
T Consensus 131 rL~elEe 137 (624)
T 3lvg_A 131 RLAELEE 137 (624)
T ss_dssp SSSTTTS
T ss_pred cHHHHHH
Confidence 9887766
No 237
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=65.75 E-value=15 Score=26.95 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=26.4
Q ss_pred CccHHHHHHHHHHhcCCCchHHHHHH-hhh--hhcchhhHHHHHHHHHhcCCccccc
Q 039275 27 HTDEVTMVVVLTASSGPGAWILAKEL-QIE--LDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 27 ~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~--~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+.++.+|..+-..+...|++++|... ... +.|+...|..+-..+.-.|+.++|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~ 330 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAA 330 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555444444444666666655 111 1244434444445555666666655
No 238
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=62.49 E-value=51 Score=25.34 Aligned_cols=115 Identities=10% Similarity=-0.137 Sum_probs=70.2
Q ss_pred hhHHHHHHHHhHHcCCCcc-HHHHHH---HHHHhcCCC-------chHHHHHH-hhhh---hcchhhHHHHHHHHHhcC-
Q 039275 11 FNEALEPFGKLESLGVHTD-EVTMVV---VLTASSGPG-------AWILAKEL-QIEL---DLSSYSLSSKTSRYAHSG- 74 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~-~~~~~~---ll~~~~~~~-------~~~~a~~~-~~~~---~~~~~~~~~ll~~~~~~g- 74 (153)
-++|++.++++... .|+ ...|+. ++..+.+.. .++++.++ ..-+ +.+...|+.---.+.+.+
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 35778888887664 232 233332 333333211 16777776 2222 334556776666667777
Q ss_pred -Cccccc------------hHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHhcC
Q 039275 75 -RIRLAR------------DPVSCKAMISGYSQAG-RFNEALEPFGKLESLGVHT-DEVTMVVVLAASSG 129 (153)
Q Consensus 75 -~~~~a~------------~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~ 129 (153)
+++++. +..+|+.--..+.+.| ..+++.+.++++.+.. | +...|+.....+.+
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHh
Confidence 446665 7888988888888888 8899999998887543 4 45555555444444
No 239
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.49 E-value=22 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.138 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
|...=..++.-+|-.|++++|.+=++...
T Consensus 30 da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 30 DASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44444455555555555555555544444
No 240
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.04 E-value=19 Score=20.21 Aligned_cols=54 Identities=7% Similarity=-0.079 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 83 VSCKAMISGYSQAGR---FNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 83 ~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+..+-..+...++ .++|..+|++..+. .|+ ......+-..+.+.|++++|..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 344444455544444 79999999998864 464 4455555668899999999988
No 241
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=61.86 E-value=9.1 Score=23.53 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...++.-.|.++++.+++.+...+..|.=..|+.+.+.|.+.+.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 56666777777888999999999888888888888888888888876553
No 242
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=61.29 E-value=24 Score=21.11 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcC----CCccccchh
Q 039275 81 DPVSCKAMISGYSQ----AGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSG----PGALDFGKS 138 (153)
Q Consensus 81 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~ 138 (153)
+...+..|=..|.. .+++++|.+.|++--+.|. ...+..+-..|.. .++.++|.+
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND---QDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCC---HHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 56777777777777 8999999999999887653 3444555555555 667777665
No 243
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.46 E-value=11 Score=23.28 Aligned_cols=50 Identities=14% Similarity=-0.011 Sum_probs=39.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...++.-.|.++++.+++.+...+..|.=..|+.+.+.|.+.+.
T Consensus 26 ~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 26 AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 45555666677788999999999888778888888888888888877653
No 244
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=59.98 E-value=21 Score=21.75 Aligned_cols=48 Identities=13% Similarity=-0.142 Sum_probs=41.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
|..-+.+++.+-|.++++.....| +..+|...|-.|...=+++.++++
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 445577899999999999998876 778899999999999999999998
No 245
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=59.62 E-value=11 Score=22.74 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=35.2
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
++.+.+.+.+-.|.++++.+++.+-..+..|.-..|+.+...|-+.
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4555666777888999999988877777777777788888888654
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.79 E-value=27 Score=20.66 Aligned_cols=85 Identities=15% Similarity=0.017 Sum_probs=53.7
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAM 88 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~l 88 (153)
..++|..+-+++...+- ...+--+-+..+...|++++|..+ +.-..||...| -+|
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw----------------------~AL 77 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPW----------------------LAL 77 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHH----------------------HHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHH----------------------HHH
Confidence 56899999999988755 222222334567888999999999 54457766444 333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
-. .+.|.-+++..-+.++..+| .|....|.
T Consensus 78 ce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 78 CE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 22 35666677666666666555 44444443
No 247
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=57.10 E-value=59 Score=24.39 Aligned_cols=19 Identities=11% Similarity=0.018 Sum_probs=11.8
Q ss_pred hhcCChhHHHHHHHHhHHc
Q 039275 6 SQAGRFNEALEPFGKLESL 24 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~ 24 (153)
.+.|++++|.++|++..+.
T Consensus 224 ~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC
Confidence 4456666666666666555
No 248
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=55.92 E-value=14 Score=22.99 Aligned_cols=50 Identities=10% Similarity=0.010 Sum_probs=38.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...++.--|.++++.+++.+...+..|.=..|+.+...|.+.+.
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 45566666677888999999998888777888887888888888776543
No 249
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.84 E-value=11 Score=23.00 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.5
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAG-RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...+ +.--|.++++.+++.+...+..|.=.-++.+.+.|.+.+.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4555666666 6778999999999888778888888888888877776543
No 250
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.84 E-value=56 Score=23.44 Aligned_cols=123 Identities=11% Similarity=0.025 Sum_probs=77.9
Q ss_pred HhhcCChhHHHHHHHHhHHcC------CCccHHHHHHHHHHhcCCCchHHHHHH---hhhhhcchhhHHHHHHHHHhcCC
Q 039275 5 YSQAGRFNEALEPFGKLESLG------VHTDEVTMVVVLTASSGPGAWILAKEL---QIELDLSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 5 ~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~~~~~~~ll~~~~~~g~ 75 (153)
+...|++++|++.|+.+...= -.-+......+|..| ..+--|+.+ ++.+..+...-+.=+.+|--.=+
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic---rEYilal~iEl~Rr~l~~~~~kR~lELAAYFT~c~ 200 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETA---REYILGLSIELERRSLKEGNTVRMLELAAYFTKAK 200 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGSC
T ss_pred HHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCcccHHHHHHHHHHhccCC
Confidence 357889999999998876541 011112222222221 122223333 44455555567777888887777
Q ss_pred ccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh-HHHHHHHhcCC
Q 039275 76 IRLARDPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVT-MVVVLAASSGP 130 (153)
Q Consensus 76 ~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~ 130 (153)
++-..-..+...-|....+.+++-.|-.+-+++.+.+-.|+... -..++..|-+.
T Consensus 201 LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 201 LSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSM 256 (325)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 87777888888889999999999999999999998775444333 33444455443
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.80 E-value=51 Score=22.99 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=69.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH---hhhhh----cchhhHHHHHHHHHhcCC
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL---QIELD----LSSYSLSSKTSRYAHSGR 75 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~----~~~~~~~~ll~~~~~~g~ 75 (153)
....+.|+++++++....-.+. -+-|...=..++.-+|-.|+|+.|.+- ...+. |....|-.+|.+=....+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~ 83 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD 83 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHH
Confidence 4567889999999988777664 345666666788899999999999887 33333 444455555544332222
Q ss_pred ccccc-------hHHHH-HHHHHHH--HhcCChHHHHHHHHHHHHc
Q 039275 76 IRLAR-------DPVSC-KAMISGY--SQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 76 ~~~a~-------~~~~~-~~li~~~--~~~g~~~~a~~~~~~m~~~ 111 (153)
+=... ....| ..|+.+. ...|+.++|.++-.+..+.
T Consensus 84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11111 33334 3444444 3459999999998888644
No 252
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=54.34 E-value=9.8 Score=23.39 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=30.4
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
+..+.+.+.+-.|.++++.+++.+-..+..|.-..|+.+.+.|-+.
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445555566677788888877766667766666677777666543
No 253
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=52.93 E-value=11 Score=20.48 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 87 AMISGYSQAG-RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 87 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
.++..+...+ ..-.+.++++.+.+.+...+..|.-..++.+.+.|.+.+
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 4556665554 566788899999888777788888888888888877654
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.60 E-value=34 Score=20.22 Aligned_cols=85 Identities=16% Similarity=0.039 Sum_probs=54.7
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhhcchhhHHHHHHHHHhcCCccccchHHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKAM 88 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~l 88 (153)
..++|..+=+++...+- ...+--+-+.++...|++++|..+ +.-..||... |-+|
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlep----------------------w~AL 76 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEP----------------------WFAL 76 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHH----------------------HHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHH----------------------HHHH
Confidence 56899999999988755 222222334567888999999999 4445675544 4333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH
Q 039275 89 ISGYSQAGRFNEALEPFGKLESLGVHTDEVTMV 121 (153)
Q Consensus 89 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 121 (153)
- -.+.|.-+++..-+.++..+| .|....|.
T Consensus 77 c--e~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 77 C--EWHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp H--HHHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred H--HHhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 2 246677777777776776655 45444443
No 255
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=51.63 E-value=0.95 Score=25.69 Aligned_cols=32 Identities=22% Similarity=0.076 Sum_probs=24.2
Q ss_pred chHHHHHHhhhhhcchhhHHHHHHHHHhcCCc
Q 039275 45 AWILAKELQIELDLSSYSLSSKTSRYAHSGRI 76 (153)
Q Consensus 45 ~~~~a~~~~~~~~~~~~~~~~ll~~~~~~g~~ 76 (153)
.+++|...+..+..+..+|-..|++|++.|-+
T Consensus 19 t~EeA~~~QYeL~k~~avyRvFiNgYAk~g~V 50 (96)
T 2f40_A 19 TPEEAKIVQYELSTRDEFYRVFINPYAKVAEV 50 (96)
T ss_dssp TTTTTHHHHHTTTTTTTBCCCCCCTTTTCCEE
T ss_pred CHHHHHHHHHHhhcchhhhhheeccccccceE
Confidence 36677777777778888888888888887763
No 256
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.94 E-value=15 Score=22.85 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAG-RFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...+ +.-.|.++++.+++.+...+..|.=..|+.+...|.+.+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 4555555555 6778999999999888778888888888888888877654
No 257
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.06 E-value=30 Score=23.41 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESL 111 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~ 111 (153)
..+..|.+.|.+++|.++|+.....
T Consensus 119 qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 119 AAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4556788999999999999988754
No 258
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=48.68 E-value=10 Score=19.13 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.0
Q ss_pred CChhHHHHHHHHhHHcCCCccH
Q 039275 9 GRFNEALEPFGKLESLGVHTDE 30 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~ 30 (153)
.++.+|+++++++.+.|-.|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~ 28 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNA 28 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcH
Confidence 4678999999999888876654
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.95 E-value=41 Score=21.02 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=10.8
Q ss_pred HHHHHHHhcCCccccc
Q 039275 65 SKTSRYAHSGRIRLAR 80 (153)
Q Consensus 65 ~ll~~~~~~g~~~~a~ 80 (153)
-|--++.+.|++++|.
T Consensus 82 yLAvg~ykl~~Y~~Ar 97 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAK 97 (144)
T ss_dssp HHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhhhHHHHH
Confidence 3445677777777766
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.28 E-value=79 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 110 (153)
...-+.+|.-|...|+.++|.+.++++..
T Consensus 217 kkki~~lL~EY~~s~D~~EA~~ci~EL~~ 245 (358)
T 3eiq_C 217 VKEIDMLLKEYLLSGDISEAEHCLKELEV 245 (358)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHccC
Confidence 34568899999999999999999999863
No 261
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=47.14 E-value=16 Score=22.59 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 19 GKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 19 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+.|++.|++++..=..+ +..+...+..-.|.++ ..+...+..|.---|+.+.+.|-+.+-.
T Consensus 11 ~~l~~~g~r~T~qR~~I-l~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 76 (145)
T 2fe3_A 11 ETLKETGVRITPQRHAI-LEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELT 76 (145)
T ss_dssp HHHHHTTCCCCHHHHHH-HHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHcCCCCCHHHHHH-HHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEe
Confidence 44667787777644332 3333333333445555 2223344555555567777777765443
No 262
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=47.02 E-value=19 Score=20.18 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
..++|...|..|....-.+...||...|..+....++.
T Consensus 15 t~eea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~DpRY~ 52 (82)
T 2dod_A 15 PLEARMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYL 52 (82)
T ss_dssp CHHHHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCSGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCCccc
Confidence 46899999999976654455678888888777766655
No 263
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.93 E-value=16 Score=22.74 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=32.4
Q ss_pred HHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccccc
Q 039275 17 PFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 17 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+-+.|++.|++++..=.. ++..+...+..-.|.++ ..+...+..|.---|+.+.+.|-+.+..
T Consensus 14 ~~~~l~~~g~r~T~qR~~-IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 81 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQREE-VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLE 81 (150)
T ss_dssp HHHHHHHCC--CHHHHHH-HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEE
Confidence 344567778777654433 34444444444445555 2223344555555567777777765544
No 264
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.45 E-value=54 Score=23.18 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 82 PVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 82 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
..--+.+|.-|...|+.++|.+.++++.
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 3455688999999999999999999986
No 265
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.21 E-value=20 Score=22.62 Aligned_cols=50 Identities=4% Similarity=-0.002 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHhcCCCccccc
Q 039275 87 AMISGYSQAGRFNEALEPFGKLESL--GVHTDEVTMVVVLAASSGPGALDFG 136 (153)
Q Consensus 87 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a 136 (153)
.++..+...++.-.|.++++.+++. +...+-.|.=.-|+.+.+.|.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4555666667777888888888877 6666777766677777777766544
No 266
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=43.89 E-value=11 Score=19.50 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=16.2
Q ss_pred ChhHHHHHHHHhHHcCCCccHH
Q 039275 10 RFNEALEPFGKLESLGVHTDEV 31 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~ 31 (153)
+++.|...|.+. +..++|+..
T Consensus 34 d~~~A~~~F~~~-~~~IP~eAF 54 (57)
T 2jp7_A 34 NYEVAIKGFQSS-MNGIPREAF 54 (57)
T ss_dssp CSHHHHHHHHHS-TTTSCHHHH
T ss_pred CHHHHHHHHHHH-HcCCCHHHh
Confidence 789999999987 555777653
No 267
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.69 E-value=14 Score=22.51 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=25.3
Q ss_pred HhHHcCCCccHHHHHHHHHHhcCCC-chHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 20 KLESLGVHTDEVTMVVVLTASSGPG-AWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 20 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.|++.|++++..=..+ +..+...+ ..-.|.++ +.+...+..|.---|+.+.+.|-+.+
T Consensus 8 ~l~~~g~r~T~qR~~I-l~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 71 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKI-LQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVR 71 (136)
T ss_dssp HHHHTTCCCCHHHHHH-HHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHCCCCCCHHHHHH-HHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 3456666665544332 33333333 33334444 22223333443344555555555543
No 268
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=43.39 E-value=54 Score=20.68 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHhHHcCCCc-cHHHHHHHHHHhcCCC-----------chHHHHHH---hhhhhcchhhHHHHHH
Q 039275 10 RFNEALEPFGKLESLGVHT-DEVTMVVVLTASSGPG-----------AWILAKEL---QIELDLSSYSLSSKTS 68 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~-----------~~~~a~~~---~~~~~~~~~~~~~ll~ 68 (153)
.+++|+..|++..+- .| +...|..+=.+|.+.| ++++|.+. -..+.|+...|..-++
T Consensus 61 ~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~ 132 (158)
T 1zu2_A 61 MIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356999999988774 34 4566777777777654 78888888 3345676655544443
No 269
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=43.31 E-value=83 Score=22.04 Aligned_cols=31 Identities=10% Similarity=-0.153 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHhcCChH--HHHHHHHHHHHc
Q 039275 81 DPVSCKAMISGYSQAGRFN--EALEPFGKLESL 111 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~ 111 (153)
+-.+|+.--..+.+.|+++ ++++.++++.+.
T Consensus 143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~ 175 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT 175 (306)
T ss_dssp CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh
Confidence 5555555555555666665 666666666644
No 270
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=43.04 E-value=24 Score=19.10 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=28.3
Q ss_pred ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchH
Q 039275 10 RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWI 47 (153)
Q Consensus 10 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 47 (153)
..++|...|..|.+..-.+...+|...+..+....++.
T Consensus 13 t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~ 50 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYS 50 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGG
T ss_pred CHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCcccc
Confidence 46899999999976654555678888888777666655
No 271
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=42.90 E-value=46 Score=21.14 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=19.7
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcC
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLG 25 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g 25 (153)
|+-|...|+.++|..-++++....
T Consensus 17 i~EYf~~~D~~Ea~~~l~eL~~p~ 40 (165)
T 2rg8_A 17 IQEYFEHGDTNEVAEMLRDLNLGE 40 (165)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCSG
T ss_pred HHHHHcCCCHHHHHHHHHHhCCcc
Confidence 667888999999999999887543
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.82 E-value=88 Score=22.20 Aligned_cols=99 Identities=8% Similarity=0.002 Sum_probs=54.1
Q ss_pred hhcCChhHHHHH----HHHhHHcCCCccHHHHHHHHHHhcCCCc--------hHHHHHHhhhh----hcchhhHHHHHHH
Q 039275 6 SQAGRFNEALEP----FGKLESLGVHTDEVTMVVVLTASSGPGA--------WILAKELQIEL----DLSSYSLSSKTSR 69 (153)
Q Consensus 6 ~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~----~~~~~~~~~ll~~ 69 (153)
.+.|....|.++ .+...+.+++++......+++.+..... +..|.+|..+. .-|......+-..
T Consensus 64 l~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~ 143 (312)
T 2wpv_A 64 LKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSK 143 (312)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHH
T ss_pred HHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Confidence 344444444442 4555666788887777777776655321 33344441111 1244455566677
Q ss_pred HHhcCCccccc---------hHHHHHHHHHHHHhc---CChHHHHHH
Q 039275 70 YAHSGRIRLAR---------DPVSCKAMISGYSQA---GRFNEALEP 104 (153)
Q Consensus 70 ~~~~g~~~~a~---------~~~~~~~li~~~~~~---g~~~~a~~~ 104 (153)
|.+.|++.+|+ +...+-.|+.-.... |...++-.+
T Consensus 144 ~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf 190 (312)
T 2wpv_A 144 LLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF 190 (312)
T ss_dssp HHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 77777777777 255565666555555 555554443
No 273
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.33 E-value=19 Score=22.20 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCcccc
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDF 135 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 135 (153)
++..+...+ .-.|.++++.+++.+...+..|.=.-|+.+.+.|.+.+
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 344444445 66889999999888877788887777787777776654
No 274
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=40.01 E-value=19 Score=22.41 Aligned_cols=58 Identities=16% Similarity=0.266 Sum_probs=24.3
Q ss_pred HhHHcCCCccHHHHHHHHHHhcCCC-chHHHHHH-----hhhhhcchhhHHHHHHHHHhcCCccc
Q 039275 20 KLESLGVHTDEVTMVVVLTASSGPG-AWILAKEL-----QIELDLSSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 20 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~-----~~~~~~~~~~~~~ll~~~~~~g~~~~ 78 (153)
.|++.|++++..=.. ++..+...+ ..-.|.++ ..+...+..|.---|+.+.+.|-+.+
T Consensus 7 ~l~~~g~r~T~qR~~-Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 7 ALKDAGLKVTLPRLK-ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHTTCCCCHHHHH-HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 345566655544332 233333333 33334444 11122233333334455555555443
No 275
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=38.53 E-value=37 Score=20.38 Aligned_cols=39 Identities=8% Similarity=-0.018 Sum_probs=25.5
Q ss_pred HHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHh
Q 039275 15 LEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQ 53 (153)
Q Consensus 15 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 53 (153)
--+|+.+....+.|++..--.-|..+...++++.|.++.
T Consensus 46 ~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih 84 (118)
T 2yru_A 46 ALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIH 84 (118)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345666666677666555444455556778888888883
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=37.27 E-value=29 Score=21.39 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCccccc
Q 039275 63 LSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 63 ~~~ll~~~~~~g~~~~a~ 80 (153)
.=-|--++.+.|++++|.
T Consensus 81 LYyLAvg~yklgdY~~Ar 98 (134)
T 3o48_A 81 LYYLTIGCYKLGEYSMAK 98 (134)
T ss_dssp HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhhhHHHHH
Confidence 334556777888887776
No 277
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=37.07 E-value=41 Score=21.96 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 85 CKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 85 ~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
--.+|.|+...|+.++|.++..++.
T Consensus 35 kLqvI~GLlql~~ydea~~yI~~~~ 59 (192)
T 1ixm_A 35 KLQLIKGNLSLQKYDRVFEMIEEMV 59 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3378999999999999999998875
No 278
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=35.92 E-value=1.2e+02 Score=21.58 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=10.1
Q ss_pred HHhcCChHHHHHHHHHHH
Q 039275 92 YSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~ 109 (153)
|.-.|++..|..+|+...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 344556666666666543
No 279
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.91 E-value=21 Score=22.52 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=41.6
Q ss_pred hhHHHHHHHH-hHHcCCCccHHHHHHHHHHhcCCCchHHHHHH-----hh--hhhcchhhHHHHHHHHHhcCCccccc
Q 039275 11 FNEALEPFGK-LESLGVHTDEVTMVVVLTASSGPGAWILAKEL-----QI--ELDLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 11 ~~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-----~~--~~~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
.+++.+-+.+ +++.|++++..= ..++..+...+..-.|.++ .. +...+..|.---|+.+.+.|-+.+-.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~ 89 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSIS 89 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4555555544 467888887644 3446666666555566666 22 33445555445567888888776653
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.65 E-value=80 Score=19.68 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=17.1
Q ss_pred hhhHhhcCChhHHHHHHHHhHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~ 23 (153)
|.-|...|+.++|..-++++..
T Consensus 16 L~EY~~~~D~~EA~~cl~EL~~ 37 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKELEV 37 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHhCC
Confidence 5667788888888888888753
No 281
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.66 E-value=20 Score=22.09 Aligned_cols=20 Identities=5% Similarity=-0.016 Sum_probs=9.0
Q ss_pred chhhHHHHHHHHHhcCCccc
Q 039275 59 SSYSLSSKTSRYAHSGRIRL 78 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~g~~~~ 78 (153)
+..|.---|+.+.+.|-+.+
T Consensus 51 s~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 51 NISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp CHHHHHHHHHHHHHHTSEEE
T ss_pred CHhHHHHHHHHHHHCCcEEE
Confidence 33333333455555555443
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.34 E-value=1.4e+02 Score=21.97 Aligned_cols=51 Identities=14% Similarity=-0.042 Sum_probs=38.0
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCC-----ccHHHHHHHHHHhcCCCchHHHHHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVH-----TDEVTMVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~~~~~~a~~~ 52 (153)
..-|...|++.+|.+++.++.+.--. .-..+|-.-+..+...+++..+...
T Consensus 106 ~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 106 IALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 35678999999999999999774222 2245566667788888988888777
No 283
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=34.17 E-value=1.9e+02 Score=23.44 Aligned_cols=47 Identities=9% Similarity=-0.072 Sum_probs=39.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHhcCCCccccchh
Q 039275 90 SGYSQAGRFNEALEPFGKLESLGVHTD-EVTMVVVLAASSGPGALDFGKS 138 (153)
Q Consensus 90 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 138 (153)
..+..+|+++-|+++-++-.. ..|+ ..||..|..+|.+.|+++.|.-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 456789999999999888764 4675 7789999999999999998876
No 284
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=34.01 E-value=15 Score=18.78 Aligned_cols=40 Identities=8% Similarity=0.035 Sum_probs=31.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
.+..=.++.-.+.++=++.|-++...+|++..+.+..+|.
T Consensus 7 vs~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLGL 46 (55)
T 1dp3_A 7 VSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGL 46 (55)
T ss_dssp CCCTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHhH
Confidence 3444456677777777888999999999999888877765
No 285
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=33.95 E-value=87 Score=19.59 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 039275 81 DPVSCKAMISGYSQAGRFNEALEPFGKLESLGVHTDEVTMVVVLA 125 (153)
Q Consensus 81 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 125 (153)
++....+-+.+|-+-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 87 eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 87 EPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 7788888899999999999999999888744 2344666776665
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.88 E-value=32 Score=22.24 Aligned_cols=58 Identities=9% Similarity=-0.087 Sum_probs=37.4
Q ss_pred hhhHhhcCChhHHHHHHHHhHHcCCCccHHH--HHHHHHHhcCCCchHHHHHH-hhhhhcc
Q 039275 2 ISGYSQAGRFNEALEPFGKLESLGVHTDEVT--MVVVLTASSGPGAWILAKEL-QIELDLS 59 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~-~~~~~~~ 59 (153)
|...++.|+.+.+..+++.+.+.|..++... -.+.|...+..|+.+-+..+ +.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 73 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM 73 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc
Confidence 3456788999888888887777776665432 22445555667777766666 5555443
No 287
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.78 E-value=29 Score=23.60 Aligned_cols=35 Identities=17% Similarity=0.063 Sum_probs=16.0
Q ss_pred HcCCCccHHHHHHHHHHhcCCCchHHHHHH-hhhhh
Q 039275 23 SLGVHTDEVTMVVVLTASSGPGAWILAKEL-QIELD 57 (153)
Q Consensus 23 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~-~~~~~ 57 (153)
+.|..++...-.+.|...+..|+.+-+..+ +.|..
T Consensus 52 ~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 87 (285)
T 3kea_A 52 NAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLD 87 (285)
T ss_dssp HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 344444333223444444555665555554 44433
No 288
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=32.46 E-value=1.4e+02 Score=21.49 Aligned_cols=122 Identities=7% Similarity=-0.134 Sum_probs=72.0
Q ss_pred CChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCC-chHHHHHH-hhh---hhcchhhHHHHHHHHHhc-C-Cccccc-
Q 039275 9 GRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPG-AWILAKEL-QIE---LDLSSYSLSSKTSRYAHS-G-RIRLAR- 80 (153)
Q Consensus 9 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~-~~~---~~~~~~~~~~ll~~~~~~-g-~~~~a~- 80 (153)
+..++|+++++++...+ +-+...|+.--..+...+ .++++.++ ..- -+.+..+|+..-..+.+. + +++++.
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34467888888887642 122334444334444455 57777777 222 233444565554444444 4 444444
Q ss_pred -----------hHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCc
Q 039275 81 -----------DPVSCKAMISGYSQAGRFN--------EALEPFGKLESLGVHTDEVTMVVVLAASSGPGA 132 (153)
Q Consensus 81 -----------~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 132 (153)
+..+|+.--..+.+.|+++ ++++.++++.+.. .-+...|+---..+.+.+.
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence 6777777666666666666 8888888887654 2356667666666666665
No 289
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.36 E-value=1.2e+02 Score=20.52 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=17.6
Q ss_pred hhhHhhcCChhHHHHHHHHhHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~ 23 (153)
|+.+....++++|+++.++.++
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4567778899999999988765
No 290
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.82 E-value=27 Score=18.09 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=18.7
Q ss_pred hhcCChhHHHHHHHHhHHcCCCcc
Q 039275 6 SQAGRFNEALEPFGKLESLGVHTD 29 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~g~~p~ 29 (153)
...|+++.|++.+-.|...+..|+
T Consensus 34 a~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 34 AQRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTTCHHHHHHHHHHSSCCCCSCC
T ss_pred HcCCCHHHHHHHHHcCcCCCCCCC
Confidence 456788888888888877777765
No 291
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.78 E-value=1.5e+02 Score=21.32 Aligned_cols=113 Identities=8% Similarity=-0.119 Sum_probs=68.9
Q ss_pred hcC-ChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCC-C-chHHHHHH-hhhhh---cchhhHHHHHHHHHhcCCcc--
Q 039275 7 QAG-RFNEALEPFGKLESLGVHTDEVTMVVVLTASSGP-G-AWILAKEL-QIELD---LSSYSLSSKTSRYAHSGRIR-- 77 (153)
Q Consensus 7 ~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~~~~a~~~-~~~~~---~~~~~~~~ll~~~~~~g~~~-- 77 (153)
..| .+++++++++.+.... +-+...|+.--..+.+. + +++++.++ ..-+. .|...|+..--.+.+.|..+
T Consensus 100 ~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc
Confidence 345 5899999999998753 33455555433333333 4 66777776 33333 34445554444444444444
Q ss_pred ------ccc------------hHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHHcCCCC-ChhhHHH
Q 039275 78 ------LAR------------DPVSCKAMISGYSQAGR-------FNEALEPFGKLESLGVHT-DEVTMVV 122 (153)
Q Consensus 78 ------~a~------------~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p-~~~t~~~ 122 (153)
++. +...|+..-..+.+.++ ++++++.+++.... .| |...|+-
T Consensus 179 ~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Y 247 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNY 247 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 222 78899999888888886 68888888887754 46 4444444
No 292
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.52 E-value=85 Score=18.56 Aligned_cols=52 Identities=10% Similarity=0.013 Sum_probs=32.4
Q ss_pred hHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHH
Q 039275 12 NEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLS 64 (153)
Q Consensus 12 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 64 (153)
+.+.+++..=.+. -.-...|...|+.++.+.|+-+-|.++...+.+...-|-
T Consensus 54 eq~~~mL~~W~~~-~g~~~Atv~~L~~aL~~~~r~diae~l~~~ie~~~~~y~ 105 (118)
T 2of5_H 54 EQIRHMLFSWAER-QAGQPGAVGLLVQALEQSDRQDVAEEVRAVLELGRRKYQ 105 (118)
T ss_dssp HHHHHHHHHHHHT-TSSCSSHHHHHHHHHHHTTCHHHHHHHHHHTCCC-----
T ss_pred HHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHcCcHHHHHHHHHHHhhhhHHHH
Confidence 5566666333222 111258889999999999999999888777777655553
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.36 E-value=1.6e+02 Score=21.59 Aligned_cols=48 Identities=10% Similarity=-0.126 Sum_probs=37.9
Q ss_pred hHHHHHHHHHhcCCccccc---------------hHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 62 SLSSKTSRYAHSGRIRLAR---------------DPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 62 ~~~~ll~~~~~~g~~~~a~---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
+...+-+-|.+.|+++.|. -...|-..|..+...+++..+.....+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556778888888888888 45566777888888889999888888875
No 294
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=27.90 E-value=1.7e+02 Score=21.04 Aligned_cols=62 Identities=10% Similarity=-0.036 Sum_probs=35.4
Q ss_pred HHhHHcCCCccHHHHHHHHHHhcCCCc--------hHHHHHH--hhhh--hcchhhHHHHHHHHHhcCCccccc
Q 039275 19 GKLESLGVHTDEVTMVVVLTASSGPGA--------WILAKEL--QIEL--DLSSYSLSSKTSRYAHSGRIRLAR 80 (153)
Q Consensus 19 ~~m~~~g~~p~~~~~~~ll~~~~~~~~--------~~~a~~~--~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 80 (153)
+.+.+.++++|......++..+..... +..|.+| +.|- .-|...-..+-..|.+.+++.+|+
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae 156 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAE 156 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 556677888998888888887766653 3344555 2221 112233334445555556655555
No 295
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=27.37 E-value=44 Score=22.24 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.5
Q ss_pred hhHhhcCChhHHHHHHHHhHH
Q 039275 3 SGYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~ 23 (153)
..|.++|.+++|.++|++.-+
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 468999999999999999643
No 296
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.65 E-value=64 Score=18.57 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCCCChhh
Q 039275 100 EALEPFGKLESLGVHTDEVT 119 (153)
Q Consensus 100 ~a~~~~~~m~~~g~~p~~~t 119 (153)
...+..++++..|+.||...
T Consensus 21 ~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 21 EIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCCeEE
Confidence 34455677888999999764
No 297
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.55 E-value=62 Score=18.37 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccccch
Q 039275 96 GRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALDFGK 137 (153)
Q Consensus 96 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 137 (153)
.+.++|.+++..+...| ...|..+++++...|....|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 57899999999998765 246889999998877665543
No 298
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.38 E-value=1.1e+02 Score=18.35 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCCchHHHHHH
Q 039275 33 MVVVLTASSGPGAWILAKEL 52 (153)
Q Consensus 33 ~~~ll~~~~~~~~~~~a~~~ 52 (153)
...+|.-|...|+.++|...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~c 29 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHC 29 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 44566666666777777666
No 299
>3cqc_A Nuclear pore complex protein NUP107; nucleoporin, mRNA transport, nucleus, phosphoprotein, protein transport, translocation, polymorphism; 2.53A {Homo sapiens} PDB: 3i4r_A 3cqg_A
Probab=25.50 E-value=60 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 83 VSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 83 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
.--|.++.-|...|++..|.++|+.+.
T Consensus 35 ~~~n~l~R~FL~~gkl~AAr~l~~rlp 61 (270)
T 3cqc_A 35 KQGNAIMRKFLASKKHEAAKEVFVKIP 61 (270)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHCC
Confidence 556889999999999999999999754
No 300
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.11 E-value=16 Score=24.23 Aligned_cols=55 Identities=16% Similarity=-0.014 Sum_probs=34.6
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccH-------HHHHHHHHHhcCC---CchHHHHHH-hhhhhc
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDE-------VTMVVVLTASSGP---GAWILAKEL-QIELDL 58 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~---~~~~~a~~~-~~~~~~ 58 (153)
...++.|+.+.+..+++.+.+.|..++. .-. +.|...+.. |+.+-+..+ +.+..+
T Consensus 7 ~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~-t~L~~A~~~~~~g~~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 7 FSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK-TCLMKAVLNLQDGVNACIMPLLQIDKDS 72 (256)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTB-CHHHHHHHTCBTTBCTTHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCC-CHHHHHHHccccchHHHHHHHHhcCCcc
Confidence 4457788998888888888887766554 223 334433444 777766666 444443
No 301
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=24.26 E-value=56 Score=19.16 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=15.7
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 039275 92 YSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~ 110 (153)
.++.|+|++|.+.+++-.+
T Consensus 30 ~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 30 AAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5799999999999877643
No 302
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=24.20 E-value=56 Score=19.07 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=15.8
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 039275 92 YSQAGRFNEALEPFGKLES 110 (153)
Q Consensus 92 ~~~~g~~~~a~~~~~~m~~ 110 (153)
.++.|++++|.+.+++-.+
T Consensus 28 ~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 28 QAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 5799999999999977653
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=23.78 E-value=1.6e+02 Score=19.49 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=32.4
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccc
Q 039275 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 134 (153)
.|..++|.|+-.+.+|.+.| -|....=..++-+.-.-|.-+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAd 65 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGN 65 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGC
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCC
Confidence 67789999999999999999 887766666666666666544
No 304
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=23.65 E-value=2.3e+02 Score=21.11 Aligned_cols=83 Identities=7% Similarity=-0.068 Sum_probs=45.8
Q ss_pred cCChhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHHHHHHhhhhhcchhhHHHHHHHHHhc-CCccccc------
Q 039275 8 AGRFNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWILAKELQIELDLSSYSLSSKTSRYAHS-GRIRLAR------ 80 (153)
Q Consensus 8 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~a~------ 80 (153)
.|++++|++++-.-...+-.++.... ...+.+.|++++|.+. ++.....-..+|+.+.+. +++..|.
T Consensus 191 ~g~~~~Av~lil~~~~~~e~~~~~~a---r~~~~~~gd~~~al~~---~p~~~~~Er~iL~~L~~~~~~~~~A~~~ipr~ 264 (446)
T 1z2z_A 191 EGNFEKAALLYIAEPFPEEPEETKNA---RQFVKDTLDFKEGLKT---YPLRLGHERAMMNHLIANPEDYSGSFRVLPQN 264 (446)
T ss_dssp HTCHHHHHHHHHSCCCTTSCTTHHHH---HHHHHHHCCHHHHHHH---SCTTCHHHHHHHHHHHHSTTCGGGGGTTSCHH
T ss_pred cCCHHHHHHHHhcCCCcccCHHHHHH---HHHHHHcCCHHHHHHH---CcchhHHHHHHHHHHHhccccHHHHHHhCCHH
Confidence 46777777776532222222332222 2233346777777765 111222334566666555 5555555
Q ss_pred ---------hHHHHHHHHHHHHhcC
Q 039275 81 ---------DPVSCKAMISGYSQAG 96 (153)
Q Consensus 81 ---------~~~~~~~li~~~~~~g 96 (153)
.+..||.+++.-.+.|
T Consensus 265 lr~myv~AyQS~lfN~~lS~Ri~~~ 289 (446)
T 1z2z_A 265 LYRMFVHGYQSYIYNIILCRRIEAG 289 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7788899888888764
No 305
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=23.05 E-value=1.1e+02 Score=19.11 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=8.8
Q ss_pred hcCChhHHHHHHHHhHH
Q 039275 7 QAGRFNEALEPFGKLES 23 (153)
Q Consensus 7 ~~g~~~~a~~~~~~m~~ 23 (153)
..|..++|.++|++...
T Consensus 66 ~~g~~~~A~~F~~~f~~ 82 (156)
T 2nxp_A 66 YNQHENEAKSFFEKFHG 82 (156)
T ss_dssp HTTCHHHHHHHHHHHGG
T ss_pred HCCCHHHHHHHHHHHhH
Confidence 34555555555555443
No 306
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.82 E-value=65 Score=14.49 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=15.5
Q ss_pred hhhHhhcCChhHHHHHHHHhHH
Q 039275 2 ISGYSQAGRFNEALEPFGKLES 23 (153)
Q Consensus 2 i~~~~~~g~~~~a~~~~~~m~~ 23 (153)
+..|...|..++|.-+-.+|+.
T Consensus 9 ~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 9 AEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHcccHHHHHHHHHHHHh
Confidence 3457778888888877666653
No 307
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=22.43 E-value=2.1e+02 Score=20.28 Aligned_cols=54 Identities=11% Similarity=-0.183 Sum_probs=33.6
Q ss_pred chhhHHHHHHHHHhcCC--ccccc------------hHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcC
Q 039275 59 SSYSLSSKTSRYAHSGR--IRLAR------------DPVSCKAMISGYSQAGR-FNEALEPFGKLESLG 112 (153)
Q Consensus 59 ~~~~~~~ll~~~~~~g~--~~~a~------------~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g 112 (153)
+..+|+.---.+.+.+. ++++. +..+|+.--..+...|. ++++++.++++.+..
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~ 175 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 175 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC
Confidence 44555555445555553 33433 66777777777777777 477888887777654
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.36 E-value=1.8e+02 Score=19.30 Aligned_cols=42 Identities=19% Similarity=0.148 Sum_probs=34.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccc
Q 039275 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 134 (153)
.|..++|.|+-.+.+|.+.|..|....=..++-+.-.-|.-+
T Consensus 18 iRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAd 59 (201)
T 3bge_A 18 VRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNAD 59 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGC
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 677899999999999999998888777677777776666554
No 309
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=21.93 E-value=1.4e+02 Score=18.17 Aligned_cols=19 Identities=32% Similarity=0.242 Sum_probs=12.5
Q ss_pred hhcCChhHHHHHHHHhHHc
Q 039275 6 SQAGRFNEALEPFGKLESL 24 (153)
Q Consensus 6 ~~~g~~~~a~~~~~~m~~~ 24 (153)
...|..++|.++|++....
T Consensus 46 v~~g~~~~A~~F~~~f~~~ 64 (138)
T 2j4b_A 46 IQQNKTDEAKEFFEKYRGD 64 (138)
T ss_dssp HHTTCHHHHHHHHHHHGGG
T ss_pred HHCCChHHHHHHHHHHhHH
Confidence 4466677777777766554
No 310
>2hm2_Q ASC2, pyrin-only protein 1, PAAD-only; pyrin domain, six helix bundle, apoptosis; NMR {Homo sapiens}
Probab=21.21 E-value=68 Score=17.93 Aligned_cols=34 Identities=3% Similarity=-0.013 Sum_probs=19.6
Q ss_pred ccccchHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 039275 76 IRLARDPVSCKAMISGYSQAGRFNEALEPFGKLE 109 (153)
Q Consensus 76 ~~~a~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 109 (153)
++.|.....-+.|+..|....-++-+..+|+.|-
T Consensus 44 le~a~~~dla~lLv~~y~~~~A~~vt~~if~~mn 77 (89)
T 2hm2_Q 44 LGQLDIVDLTDKLVASYYEDYAAELVVAVLRDMR 77 (89)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHcCHHHHHHHHHHHHHHcC
Confidence 3344444455556666666666666666666654
No 311
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=20.68 E-value=1.5e+02 Score=17.88 Aligned_cols=87 Identities=10% Similarity=-0.034 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhHHcCCCccHHHHHHHHHHhcCCCchHH---HHHHhhhhhcchhhHHHHHHHHHhcCCccccchHHHHHH
Q 039275 11 FNEALEPFGKLESLGVHTDEVTMVVVLTASSGPGAWIL---AKELQIELDLSSYSLSSKTSRYAHSGRIRLARDPVSCKA 87 (153)
Q Consensus 11 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 87 (153)
+..+.+-|.+....|. |+..+--.+-.++.+..+... +..+ +....+.+.++.- ....| .
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~l--------------Le~l~~~~~p~~~-Rd~lY-~ 79 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVL--------------LEELLPKGSKEEQ-RDYVF-Y 79 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHH--------------HHHHTTTSCHHHH-HHHHH-H
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHH--------------HHHHHhcCCcchH-HHHHH-H
Confidence 4455555655555454 555555555566666665444 4333 1111111111110 11223 4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 039275 88 MISGYSQAGRFNEALEPFGKLESLGVHTD 116 (153)
Q Consensus 88 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 116 (153)
|--|+.+.|++++|.+.++.+.+. .|+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 567889999999999999999865 453
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.38 E-value=36 Score=22.44 Aligned_cols=50 Identities=10% Similarity=-0.087 Sum_probs=34.0
Q ss_pred hhHhhcCChhHHHHHHHHhHHcCCCccHHHH-------HHHHHHhc--CCCchHHHHHH
Q 039275 3 SGYSQAGRFNEALEPFGKLESLGVHTDEVTM-------VVVLTASS--GPGAWILAKEL 52 (153)
Q Consensus 3 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-------~~ll~~~~--~~~~~~~a~~~ 52 (153)
...++.|+.+....+++.+.+.|..++...+ +.|..+.. +.|+.+-+..+
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~L 68 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHH
Confidence 4567889999988899888888777664442 33333432 56777766666
No 313
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.22 E-value=2e+02 Score=19.20 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=34.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHhcCCCccc
Q 039275 93 SQAGRFNEALEPFGKLESLGVHTDEVTMVVVLAASSGPGALD 134 (153)
Q Consensus 93 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 134 (153)
.|..++|.|+-.+.+|.+.|.-|....=..++-+.-.-|.-+
T Consensus 46 iRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAd 87 (213)
T 3ctd_A 46 IRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLAD 87 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGS
T ss_pred HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCC
Confidence 677899999999999999998888777677777776666554
Done!