BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039280
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 193 bits (490), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 171/371 (46%), Gaps = 73/371 (19%)
Query: 122 NYTSGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDL 181
NYTS IHH I L+ +T Y Y G +F T P GP D P ++GD+
Sbjct: 80 NYTSAFIHHCTIKDLEYDTKYYYRLG---FGDAKRQFWFVTPPKPGP-DVPYVFGLIGDI 135
Query: 182 GLTYNTTTTVAHLMSNHPD--LLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239
G T+++ TT+ H N +L +GDLSY++ + +
Sbjct: 136 GQTHDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNN------------------- 176
Query: 240 RWDYWGRYMQPLVSNVPTMVIEGEHEIERQ---AENQTFAAYSSRFAFPXXXXXXXXXXX 296
RWD WGR+ + V+ P + G HEI+ E Q F +++R+ P
Sbjct: 177 RWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEYQPFVPFTNRYPTPHEASGSGDPLW 236
Query: 297 XXFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY 356
H ++LS+Y + K S QYKW S+L V+R TPWLI H P Y++Y AHY
Sbjct: 237 YAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHY 296
Query: 357 REVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL-----------DPCGPVYI 405
E E MR E YY VDIVF+GHVH+YERS RV N + D PVYI
Sbjct: 297 MEGEAMRAIFEPYFVYYKVDIVFSGHVHSYERSERVSNVAYNIVNAKCTPVSDESAPVYI 356
Query: 406 LVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYR 465
+GDGGN EGL A E T P QP YSA+R
Sbjct: 357 TIGDGGNSEGL----ASE-------MTQP-----------------------QPSYSAFR 382
Query: 466 ESSFGHGILEV 476
E+SFGHGI ++
Sbjct: 383 EASFGHGIFDI 393
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 192 bits (487), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 173/371 (46%), Gaps = 73/371 (19%)
Query: 122 NYTSGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDL 181
NY+SG IHH I L+ NT Y YE G + + S F T P +G D P ++GDL
Sbjct: 81 NYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFS---FITPPQTG-LDVPYTFGLIGDL 136
Query: 182 GLTYNTTTTVAH--LMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239
G ++++ TT++H L +L +GDLSYAD Y +
Sbjct: 137 GQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-------------------NV 177
Query: 240 RWDYWGRYMQPLVSNVPTMVIEGEHEIERQAE-NQT--FAAYSSRFAFPXXXXXXXXXXX 296
RWD WGR+ + V+ P + G HEIE E N+T F +S R+ P
Sbjct: 178 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFW 237
Query: 297 XXFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY 356
H ++LS+Y Y + + QY WL+ +L V R TPWLI H P Y++Y+ H+
Sbjct: 238 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHF 297
Query: 357 REVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL-----------DPCGPVYI 405
E E MR + E Y VD+VF GHVHAYERS RV N + D PVYI
Sbjct: 298 MEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYI 357
Query: 406 LVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYR 465
+GD GN +D N +P QP+YSA+R
Sbjct: 358 TIGDAGNYGVID-------SNMIQP---------------------------QPEYSAFR 383
Query: 466 ESSFGHGILEV 476
E+SFGHG+ ++
Sbjct: 384 EASFGHGMFDI 394
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 126/371 (33%), Positives = 172/371 (46%), Gaps = 73/371 (19%)
Query: 122 NYTSGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDL 181
NY+SG IHH I L+ NT Y YE G + + F T P +G D P ++GDL
Sbjct: 73 NYSSGFIHHTTIRKLKYNTKYYYEVG---LRNTTRRFSFITPPQTG-LDVPYTFGLIGDL 128
Query: 182 GLTYNTTTTVAH--LMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239
G ++++ TT++H L +L +GDLSYAD Y +
Sbjct: 129 GQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-------------------NV 169
Query: 240 RWDYWGRYMQPLVSNVPTMVIEGEHEIERQAE-NQT--FAAYSSRFAFPXXXXXXXXXXX 296
RWD WGR+ + V+ P + G HEIE E N+T F +S R+ P
Sbjct: 170 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFW 229
Query: 297 XXFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY 356
H ++LS+Y Y + + QY WL+ +L V R TPWLI H P Y++Y+ H+
Sbjct: 230 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHF 289
Query: 357 REVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL-----------DPCGPVYI 405
E E MR + E Y VD+VF GHVHAYERS RV N + D PVYI
Sbjct: 290 MEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYI 349
Query: 406 LVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYR 465
+GD GN +D N +P QP+YSA+R
Sbjct: 350 TIGDAGNYGVID-------SNMIQP---------------------------QPEYSAFR 375
Query: 466 ESSFGHGILEV 476
E+SFGHG+ ++
Sbjct: 376 EASFGHGMFDI 386
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 192 bits (487), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 127/371 (34%), Positives = 173/371 (46%), Gaps = 73/371 (19%)
Query: 122 NYTSGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDL 181
NY+SG IHH I L+ NT Y YE G + + S F T P +G D P ++GDL
Sbjct: 75 NYSSGFIHHTTIRKLKYNTKYYYEVGLRNTTRRFS---FITPPQTG-LDVPYTFGLIGDL 130
Query: 182 GLTYNTTTTVAH--LMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239
G ++++ TT++H L +L +GDLSYAD Y +
Sbjct: 131 GQSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHD-------------------NV 171
Query: 240 RWDYWGRYMQPLVSNVPTMVIEGEHEIERQAE-NQT--FAAYSSRFAFPXXXXXXXXXXX 296
RWD WGR+ + V+ P + G HEIE E N+T F +S R+ P
Sbjct: 172 RWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFW 231
Query: 297 XXFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY 356
H ++LS+Y Y + + QY WL+ +L V R TPWLI H P Y++Y+ H+
Sbjct: 232 YSIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHF 291
Query: 357 REVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL-----------DPCGPVYI 405
E E MR + E Y VD+VF GHVHAYERS RV N + D PVYI
Sbjct: 292 MEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITNGLCTPVKDQSAPVYI 351
Query: 406 LVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYR 465
+GD GN +D N +P QP+YSA+R
Sbjct: 352 TIGDAGNYGVID-------SNMIQP---------------------------QPEYSAFR 377
Query: 466 ESSFGHGILEV 476
E+SFGHG+ ++
Sbjct: 378 EASFGHGMFDI 388
>pdb|2BQ8|X Chain X, Crystal Structure Of Human Purple Acid Phosphatase With An
Inhibitory Conformation Of The Repression Loop
Length = 304
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 87/255 (34%), Gaps = 38/255 (14%)
Query: 174 RIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSI-ESP 232
R VGD G N A M+N ++ + L AD L+ G Q I +
Sbjct: 6 RFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILG-ADFILSLGDNFYFTGVQDINDKR 64
Query: 233 IQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQ-TFAAYSSRFAFPXXXXXX 291
QET++ + + VP V+ G H+ Q ++ S R+ FP
Sbjct: 65 FQETFE------DVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRL 118
Query: 292 XXXXXXXFNAGGIHFVMLSAYI----------------DYDKSSDQYKWLESDLGDVDRE 335
N F++ + + D + Q WL+ L +
Sbjct: 119 HFKIPQT-NVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED 177
Query: 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNY 395
L+A +P W A + C+ ++ LL YGV GH H + Y
Sbjct: 178 YV--LVAGHYPVWSI---AEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ-------Y 225
Query: 396 SLDPCGPVYILVGDG 410
D G Y+L G G
Sbjct: 226 LQDENGVGYVLSGAG 240
>pdb|1WAR|A Chain A, Recombinant Human Purple Acid Phosphatase Expressed In
Pichia Pastoris
Length = 310
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 87/255 (34%), Gaps = 38/255 (14%)
Query: 174 RIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSI-ESP 232
R VGD G N A M+N ++ + L AD L+ G Q I +
Sbjct: 12 RFVAVGDWGGVPNAPFHTAREMANAKEIARTVQILG-ADFILSLGDNFYFTGVQDINDKR 70
Query: 233 IQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQ-TFAAYSSRFAFPXXXXXX 291
QET++ + + VP V+ G H+ Q ++ S R+ FP
Sbjct: 71 FQETFE------DVFSDRSLRKVPWYVLAGNHDHLGNVSAQIAYSKISKRWNFPSPFYRL 124
Query: 292 XXXXXXXFNAGGIHFVMLSAYI----------------DYDKSSDQYKWLESDLGDVDRE 335
N F++ + + D + Q WL+ L +
Sbjct: 125 HFKIPQT-NVSVAIFMLDTVTLCGNSDDFLSQQPERPRDVKLARTQLSWLKKQLAAARED 183
Query: 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNY 395
L+A +P W A + C+ ++ LL YGV GH H + Y
Sbjct: 184 YV--LVAGHYPVWSI---AEHGPTHCLVKQLRPLLATYGVTAYLCGHDHNLQ-------Y 231
Query: 396 SLDPCGPVYILVGDG 410
D G Y+L G G
Sbjct: 232 LQDENGVGYVLSGAG 246
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 314 DYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYY 373
D + Q WL+ L + +++ A H P +S A + C+ + LL Y
Sbjct: 158 DLGVARTQLSWLKKQLAAAKED---YVLVAGHYPIWSI--AEHGPTRCLVKNLRPLLAAY 212
Query: 374 GVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDG 410
GV GH H + Y D G Y+L G G
Sbjct: 213 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSGAG 242
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 314 DYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYY 373
D + Q WL+ L + +++ A H P +S A + C+ + LL Y
Sbjct: 179 DLGVARTQLSWLKKQLAAAKED---YVLVAGHYPIWSI--AEHGPTRCLVKNLRPLLAAY 233
Query: 374 GVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDG 410
GV GH H + Y D G Y+L G G
Sbjct: 234 GVTAYLCGHDHNLQ-------YLQDENGVGYVLSGAG 263
>pdb|3P4L|A Chain A, Crystal Structure Of A Hemojuvelin-Binding Fragment Of
Neogenin
Length = 211
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 132 LITGLQPNTLYEYEC----GDPSISAMSSSH--YFRTMPVSGPSDYPNRIAVVGDLG 182
L+TGL+PNTLYE+ G S + ++H F +P S P D + VV G
Sbjct: 67 LVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKD----VTVVSKEG 119
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 126 GIIHHVLITGLQPNTLYEYECGDPSISAM---SSSHYFRTMPVSGPS 169
G+ V++ L+PNT YE + S F+T+PVSGPS
Sbjct: 71 GVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVSGPS 117
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 107 YSLVYNQLYPPDGLQ-NYTSGIIHHVLITGLQPNTLYEYECGDP 149
YSL NQ YP + ++ +G I HV + GL+P LY Y P
Sbjct: 48 YSLT-NQKYPKEIIEVKNKTGDIWHVFVPGLRPGQLYAYRVYGP 90
>pdb|2A73|B Chain B, Human Complement Component C3
Length = 991
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 389 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 440
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 441 --------KPDGVFQEDAPVIHQEMIGGLRNN 464
>pdb|2GOX|A Chain A, Crystal Structure Of Efb-c / C3d Complex
pdb|2GOX|C Chain C, Crystal Structure Of Efb-c / C3d Complex
pdb|2NOJ|A Chain A, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|C Chain C, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|E Chain E, Crystal Structure Of Ehp C3D COMPLEX
pdb|2NOJ|G Chain G, Crystal Structure Of Ehp C3D COMPLEX
pdb|3D5R|A Chain A, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5R|B Chain B, Crystal Structure Of Efb-C (N138a) C3D COMPLEX
pdb|3D5S|A Chain A, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
pdb|3D5S|B Chain B, Crystal Structure Of Efb-C (R131a) C3D COMPLEX
Length = 297
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 71 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 122
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 123 --------KPDGVFQEDAPVIHQEMIGGLRNN 146
>pdb|1C3D|A Chain A, X-ray Crystal Structure Of C3d: A C3 Fragment And Ligand
For Complement Receptor 2
pdb|2XQW|A Chain A, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
pdb|2XQW|B Chain B, Structure Of Factor H Domains 19-20 In Complex With
Complement C3d
Length = 294
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 68 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 119
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 120 --------KPDGVFQEDAPVIHQEMIGGLRNN 143
>pdb|2XWB|B Chain B, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|D Chain D, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 912
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 310 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 361
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 362 --------KPDGVFQEDAPVIHQEMIGGLRNN 385
>pdb|2I07|B Chain B, Human Complement Component C3b
pdb|2XWJ|B Chain B, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|D Chain D, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|F Chain F, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|H Chain H, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 915
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 313 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 364
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 365 --------KPDGVFQEDAPVIHQEMIGGLRNN 388
>pdb|1GHQ|A Chain A, Cr2-C3d Complex Structure
Length = 308
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 68 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 119
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 120 --------KPDGVFQEDAPVIHQEMIGGLRNN 143
>pdb|1W2S|A Chain A, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 307
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 68 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 119
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 120 --------KPDGVFQEDAPVIHQEMIGGLRNN 143
>pdb|2HR0|B Chain B, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2ICF|B Chain B, Crig Bound To C3b
pdb|3G6J|B Chain B, C3b In Complex With A C3b Specific Fab
pdb|3G6J|D Chain D, C3b In Complex With A C3b Specific Fab
pdb|2WII|B Chain B, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|B Chain B, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|D Chain D, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|F Chain F, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|H Chain H, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L5N|B Chain B, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
Length = 915
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 313 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 364
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 365 --------KPDGVFQEDAPVIHQEMIGGLRNN 388
>pdb|3OXU|A Chain A, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|B Chain B, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3OXU|C Chain C, Complement Components Factor H Ccp19-20 And C3d In Complex
pdb|3RJ3|A Chain A, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|B Chain B, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
pdb|3RJ3|C Chain C, Complement Components Factor H Ccp19-20 (S1191l Mutant)
And C3d In Complex
Length = 317
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 75 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 126
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 127 --------KPDGVFQEDAPVIHQEMIGGLRNN 150
>pdb|2WY7|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d Revealing An
Alternative Binding Mode
pdb|2WY8|A Chain A, Staphylococcus Aureus Complement Subversion Protein Sbi-Iv
In Complex With Complement Fragment C3d
pdb|3OED|A Chain A, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|B Chain B, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 310
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 49 QPEQIFVSLSARYDSVWIS-WITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGY 107
QP F + R S W++ ++ F + N+ +D +++ V + +
Sbjct: 68 QPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQ-------- 119
Query: 108 SLVYNQLYPPDGLQNYTSGIIHHVLITGLQPN 139
PDG+ + +IH +I GL+ N
Sbjct: 120 --------KPDGVFQEDAPVIHQEMIGGLRNN 143
>pdb|1X5J|A Chain A, The Solution Structure Of The Fifth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 113
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 132 LITGLQPNTLYEYEC----GDPSISAMSSSHYFRTMPVSGPSD 170
L+TGL+PNTLYE+ G S S S + + T +SGPS
Sbjct: 71 LVTGLKPNTLYEFSVMVTKGRRS-STWSMTAHGTTFELSGPSS 112
>pdb|1X5A|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Mouse Ephrin Type-A Receptor 1
Length = 107
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 130 HVLITGLQPNTLY--EYECGDP-SISAMSSSHYFRTMPVSGPS 169
VL+T LQP+T Y P S H FRT P SGPS
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPS 105
>pdb|1MI5|D Chain D, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|D Chain D, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|I Chain I, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|D Chain D, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 201
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 23/124 (18%)
Query: 137 QPNTLYEYE-------CGDPSISAMSSSHYFRTMPVSGP--------SDYPNRIAVVGDL 181
QPN++ E C +IS H++R +P GP S+ NR+A + +
Sbjct: 4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLA-I 62
Query: 182 GLTYNTTTTVAHLMSNHPD-----LLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQET 236
++T + H + +L L G SY L GT + + +I++P
Sbjct: 63 AEDRKSSTLILHRATLRDAAVYYCILPLAGGTSYGKLTFGQGTILTVH--PNIQNPDPAV 120
Query: 237 YQPR 240
YQ R
Sbjct: 121 YQLR 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,277,954
Number of Sequences: 62578
Number of extensions: 722075
Number of successful extensions: 1493
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1463
Number of HSP's gapped (non-prelim): 30
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)